5317 174 22 8 chr11 31 255 -148783217 - MER4-int LTR ERV1 -1716 5821 5602 242 56 28 0 chr11 255 291 -148783181 + (TA)n Simple_repeat Simple_repeat 1 37 0 5317 174 22 8 chr11 291 1126 -148782346 - MER4-int LTR ERV1 -1935 5602 4747 878 93 34 118 chr11 1128 1259 -148782213 - LTR8 LTR ERV1 -504 187 77 2031 118 10 10 chr11 1259 1556 -148781916 + AluSq SINE Alu 1 297 -16 878 93 34 118 chr11 1556 1628 -148781844 - LTR8 LTR ERV1 -614 77 1 364 210 34 125 chr11 1644 1885 -148781587 - MER4-int LTR ERV1 -3658 1982 1091 278 233 50 53 chr11 1895 2100 -148781372 - MER34C LTR ERV1 -172 413 154 2238 95 0 0 chr11 2180 2476 -148780996 + AluY SINE Alu 1 296 -15 353 191 12 12 chr11 2687 2771 -148780701 - MER4-int LTR ERV1 -6697 840 757 1304 152 56 106 chr11 2790 2876 -148780596 - AluJo SINE Alu -6 306 217 4277 71 5 23 chr11 2876 3440 -148780032 - MER41A LTR ERV1 0 554 1 1304 152 56 106 chr11 3440 3675 -148779797 - AluJo SINE Alu -95 217 1 3458 204 10 31 chr11 3675 4458 -148779014 - MER4-int LTR ERV1 -6770 767 1 1966 99 4 4 chr11 4476 4748 -148778724 + AluSx SINE Alu 1 272 -40 669 225 3 0 chr11 4863 5153 -148778319 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 735 238 4 0 chr11 5182 5886 -148777586 + (TCCA)n Simple_repeat Simple_repeat 1 707 0 287 289 20 130 chr11 7217 7463 -148776009 - L3 LINE CR1 -437 1140 922 189 0 0 0 chr11 14182 14203 -148769269 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 293 275 0 14 chr11 15166 15235 -148768237 + MIR3 SINE MIR 104 171 -37 2298 86 3 3 chr11 19161 19464 -148764008 - AluSp SINE Alu -10 303 1 187 270 25 82 chr11 22918 23077 -148760395 - L2 LINE L2 -190 3082 2933 189 147 0 52 chr11 24421 24537 -148758935 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 299 204 0 56 chr11 24547 24709 -148758763 + CT-rich Low_complexity Low_complexity 2 154 0 576 174 31 6 chr11 24866 25027 -148758445 + CT-rich Low_complexity Low_complexity 2 166 0 211 204 0 0 chr11 25419 25463 -148758009 + CT-rich Low_complexity Low_complexity 2 45 0 235 291 63 13 chr11 28243 28322 -148755150 + MIR SINE MIR 108 190 -72 196 305 52 31 chr11 28439 28572 -148754900 - MIR SINE MIR -52 156 51 269 356 6 23 chr11 29025 29199 -148754273 + CT-rich Low_complexity Low_complexity 1 171 0 204 97 0 0 chr11 31152 31183 -148752289 + (TG)n Simple_repeat Simple_repeat 1 31 0 188 163 0 20 chr11 33880 33929 -148749543 + CT-rich Low_complexity Low_complexity 3 50 0 300 111 0 0 chr11 34026 34071 -148749401 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 209 284 21 11 chr11 34326 34421 -148749051 + CT-rich Low_complexity Low_complexity 2 97 0 315 191 0 0 chr11 34421 34484 -148748988 + C-rich Low_complexity Low_complexity 1 63 0 220 323 32 0 chr11 35000 35093 -148748379 - MIR SINE MIR -74 134 39 276 217 300 17 chr11 36065 36185 -148747287 + L3 LINE CR1 1349 1502 -75 587 200 0 7 chr11 36306 36446 -148747026 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 237 224 0 0 chr11 36582 36631 -148746841 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36639 36685 -148746787 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36704 36750 -148746722 + Alu SINE Alu 237 282 -20 263 184 0 0 chr11 36765 36814 -148746658 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36879 36925 -148746547 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36940 36986 -148746486 + Alu SINE Alu 237 282 -20 195 69 0 0 chr11 36993 37022 -148746450 + (CA)n Simple_repeat Simple_repeat 1 29 0 231 61 0 0 chr11 37052 37085 -148746387 + (CA)n Simple_repeat Simple_repeat 1 33 0 210 91 0 0 chr11 37119 37152 -148746320 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 61 0 0 chr11 37182 37215 -148746257 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 204 0 0 chr11 37253 37302 -148746170 + AluJ/monomer SINE Alu 237 285 -17 249 57 0 0 chr11 37384 37419 -148746053 + (CA)n Simple_repeat Simple_repeat 1 35 0 253 83 0 0 chr11 37419 37455 -148746017 + Alu SINE Alu 250 285 -17 339 111 25 12 chr11 37501 37582 -148745890 + (CA)n Simple_repeat Simple_repeat 2 83 0 235 132 0 0 chr11 37595 37633 -148745839 + Alu SINE Alu 247 284 -18 204 40 0 0 chr11 37633 37658 -148745814 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr11 37688 37719 -148745753 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 37801 37831 -148745641 + (CA)n Simple_repeat Simple_repeat 1 30 0 1907 162 10 36 chr11 38177 38528 -148744944 - MLT1B LTR MaLR -5 385 43 2175 86 17 0 chr11 38528 38818 -148744654 - AluSx SINE Alu -17 295 1 1907 162 10 36 chr11 38818 38854 -148744618 - MLT1B LTR MaLR -347 43 8 999 135 6 6 chr11 38922 39078 -148744394 - AluJb SINE Alu -156 156 1 341 318 26 0 chr11 39703 39854 -148743618 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 265 229 8 8 chr11 39856 39978 -148743494 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 377 328 8 0 chr11 40140 40262 -148743210 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 731 162 12 12 chr11 40315 40488 -148742984 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 266 319 45 70 chr11 42552 42675 -148740797 + MIR SINE MIR 89 209 -53 2090 117 0 3 chr11 42675 42973 -148740499 + AluSx SINE Alu 1 297 -15 266 319 45 70 chr11 42973 43006 -148740466 + MIR SINE MIR 209 241 -21 195 250 54 18 chr11 43020 43076 -148740396 - MIR SINE MIR -58 150 93 322 172 17 103 chr11 49297 49372 -148734100 - MER45A DNA AcHobo -1405 176 113 2296 100 0 0 chr11 49372 49681 -148733791 + AluSx SINE Alu 1 309 -3 322 172 17 103 chr11 49681 49721 -148733751 - MER45A DNA AcHobo -1468 113 71 833 228 103 70 chr11 49864 50052 -148733420 + MLT1C LTR MaLR 9 189 -278 2294 88 0 25 chr11 50052 50369 -148733103 + AluY SINE Alu 1 309 -2 833 228 103 70 chr11 50369 50539 -148732933 + MLT1C LTR MaLR 189 379 -88 234 0 0 0 chr11 51152 51178 -148732294 + (TG)n Simple_repeat Simple_repeat 1 26 0 1720 165 0 14 chr11 51190 51475 -148731997 - AluJb SINE Alu -29 283 3 816 157 8 15 chr11 52554 52688 -148730784 - FLAM_C SINE Alu 0 133 1 1501 145 47 63 chr11 52697 53014 -148730458 - AluJb SINE Alu 0 312 1 351 327 60 36 chr11 53830 54215 -148729257 - L2 LINE L2 -66 3206 2813 246 62 0 0 chr11 54870 54902 -148728570 + (CCCTAA)n Simple_repeat Simple_repeat 1 32 0 300 296 84 56 chr11 55144 55286 -148728186 - L1MC4 LINE L1 -10 8032 7887 392 354 86 48 chr11 55295 55852 -148727620 - L1M4c LINE L1 -4896 1488 911 463 266 36 0 chr11 55996 56186 -148727286 - L1MC4 LINE L1 -993 6900 6616 215 175 35 18 chr11 59756 59813 -148723659 + (CCCG)n Simple_repeat Simple_repeat 3 60 0 280 231 66 0 chr11 64341 64432 -148719040 + (CAGCC)n Simple_repeat Simple_repeat 4 100 0 486 49 0 0 chr11 66870 66931 -148716541 + (CA)n Simple_repeat Simple_repeat 2 62 0 811 190 74 0 chr11 67240 67403 -148716069 + MER45A DNA AcHobo 1 175 -3 211 189 0 0 chr11 67769 67806 -148715666 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 262 260 10 30 chr11 76287 76387 -148707085 + (CACG)n Simple_repeat Simple_repeat 2 99 0 690 130 10 0 chr11 78574 78674 -148704798 - AluY SINE Alu -108 203 103 227 183 14 0 chr11 78919 78990 -148704482 - L1MDb LINE L1 -5202 1207 1136 813 193 175 9 chr11 79111 79334 -148704138 - Tigger7 DNA MER2_type -16 2571 2312 564 211 0 68 chr11 79341 79410 -148704062 - Tigger7 DNA MER2_type -562 171 115 2018 121 7 0 chr11 79410 79734 -148703738 + AluSx SINE Alu 1 326 0 564 211 0 68 chr11 79734 79810 -148703662 - Tigger7 DNA MER2_type -618 115 35 1399 210 20 37 chr11 79835 80092 -148703380 - MLT1B LTR MaLR -48 342 91 1485 112 0 31 chr11 80092 80316 -148703156 + AluSg/x SINE Alu 84 300 -10 1399 210 20 37 chr11 80316 80406 -148703066 - MLT1B LTR MaLR -299 91 1 2067 127 0 0 chr11 81989 82288 -148701184 + AluSx SINE Alu 1 299 -13 2176 125 0 3 chr11 82530 82834 -148700638 + AluSx SINE Alu 1 303 -9 1132 190 73 6 chr11 82849 83137 -148700335 + L1MB3 LINE L1 5875 6182 -1 768 293 6 45 chr11 83152 83486 -148699986 + L1MC4 LINE L1 6703 7023 -1019 1389 218 199 31 chr11 83536 84049 -148699423 + MLT1E1 LTR MaLR 56 654 0 384 185 152 26 chr11 84114 84265 -148699207 + L1MC5 LINE L1 7036 7205 -756 566 188 228 0 chr11 84266 84415 -148699057 + MER20 DNA MER1_type 1 183 -36 1869 213 158 4 chr11 84421 84928 -148698544 + MLT1E LTR MaLR 7 591 -2 889 257 139 46 chr11 85055 85581 -148697891 - MLT1E2 LTR MaLR 0 626 52 594 238 0 21 chr11 85642 85785 -148697687 - MER58A DNA MER1_type 0 140 1 400 314 78 26 chr11 86053 86359 -148697113 + L1MC5 LINE L1 7400 7721 -240 215 200 0 0 chr11 87098 87133 -148696339 + polypurine Low_complexity Low_complexity 1 35 0 1122 166 0 3 chr11 87147 87458 -148696014 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1629 137 4 15 chr11 87559 87830 -148695642 - AluJo SINE Alu -40 272 5 1178 253 102 119 chr11 87835 88426 -148695046 - L1ME1 LINE L1 -223 6012 5413 2275 97 0 0 chr11 88426 88724 -148694748 - AluSq SINE Alu -8 305 8 1178 253 102 119 chr11 88724 89149 -148694323 - L1ME1 LINE L1 -822 5413 4982 899 183 0 12 chr11 89149 89313 -148694159 + AluJb SINE Alu 128 289 -23 1178 253 102 119 chr11 89313 90178 -148693294 - L1ME1 LINE L1 -1253 4982 3978 2089 193 33 0 chr11 90179 90568 -148692904 - MER57A LTR ERV1 0 403 2 940 198 45 0 chr11 90577 90779 -148692693 - MER57A-int LTR ERV1 -47 7490 7280 588 145 23 30 chr11 90779 90910 -148692562 - LTR54B LTR ERV1 -366 132 3 2130 205 13 26 chr11 90910 91378 -148692094 - MER57A-int LTR ERV1 -391 7146 6685 1710 154 48 3 chr11 91692 91984 -148691488 - AluJo SINE Alu -7 305 1 2139 129 3 0 chr11 92209 92518 -148690954 - AluSx SINE Alu -2 310 1 364 320 31 2 chr11 92736 92921 -148690551 - L1M4 LINE L1 -783 5363 5175 1353 111 5 0 chr11 92965 93154 -148690318 - AluY SINE Alu -19 292 103 2188 100 3 3 chr11 93537 93836 -148689636 - AluSx SINE Alu -13 299 1 1937 134 0 49 chr11 93836 94164 -148689308 - AluJb SINE Alu 0 312 1 943 219 24 39 chr11 94166 94234 -148689238 - L1ME1 LINE L1 -4038 2358 2291 1560 166 7 36 chr11 94234 94536 -148688936 - AluJo SINE Alu -19 293 1 943 219 24 39 chr11 94536 94805 -148688667 - L1ME1 LINE L1 -4105 2291 2026 1677 263 69 73 chr11 94815 95658 -148687814 - L1ME1 LINE L1 -5523 873 35 2070 111 0 7 chr11 95826 96124 -148687348 - AluSx SINE Alu -16 296 1 350 276 31 34 chr11 96387 96546 -148686926 + MIR SINE MIR 31 187 -68 450 415 36 36 chr11 96741 97131 -148686341 - L1M4 LINE L1 -1525 4621 4232 304 298 31 19 chr11 97141 97302 -148686170 - L1M4 LINE L1 -1948 4198 4036 890 148 225 11 chr11 97513 97629 -148685843 + AluJo SINE Alu 1 155 -157 1449 158 90 23 chr11 97629 98193 -148685279 + AluJb SINE Alu 3 286 -26 314 98 98 33 chr11 97695 97740 -148685732 + AluJo SINE Alu 87 128 -486 2348 77 7 0 chr11 97740 98039 -148685433 + AluSc SINE Alu 1 301 -8 314 98 98 33 chr11 98039 98219 -148685253 + AluJo SINE Alu 128 614 0 1594 74 5 0 chr11 98667 98870 -148684602 - AluSg/x SINE Alu -20 290 87 2042 62 13 65 chr11 98977 99286 -148684186 - AluY SINE Alu -18 293 1 424 337 58 0 chr11 99286 99458 -148684014 - L1M4 LINE L1 -3109 3037 2856 201 261 25 25 chr11 100062 100181 -148683291 + (TG)n Simple_repeat Simple_repeat 2 120 0 221 240 31 31 chr11 100215 100344 -148683128 + (TG)n Simple_repeat Simple_repeat 2 130 0 243 0 0 0 chr11 100423 100450 -148683022 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr11 100694 100721 -148682751 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 294 20 20 chr11 100753 100906 -148682566 + (TG)n Simple_repeat Simple_repeat 2 154 0 243 0 0 0 chr11 100980 101007 -148682465 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr11 101228 101255 -148682217 + (TG)n Simple_repeat Simple_repeat 2 28 0 371 193 48 24 chr11 101366 101532 -148681940 + (TG)n Simple_repeat Simple_repeat 1 170 0 369 182 18 18 chr11 107806 107916 -148675556 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 616 242 4 4 chr11 107955 108192 -148675280 + (TGGG)n Simple_repeat Simple_repeat 1 237 0 735 192 0 0 chr11 108193 108370 -148675102 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 205 171 0 0 chr11 108393 108428 -148675044 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 327 330 70 70 chr11 109228 109573 -148673899 + L1ME4a LINE L1 5016 5360 -786 1211 288 76 43 chr11 109625 110306 -148673166 + L1ME4a LINE L1 5418 6121 0 205 156 47 47 chr11 116924 117061 -148666411 + (CAGAGA)n Simple_repeat Simple_repeat 1 137 0 207 100 0 0 chr11 118097 118127 -148665345 + (GA)n Simple_repeat Simple_repeat 2 31 0 207 100 0 0 chr11 118637 118667 -148664805 + (GA)n Simple_repeat Simple_repeat 2 31 0 191 133 22 0 chr11 118823 118868 -148664604 + GA-rich Low_complexity Low_complexity 2 47 0 316 265 31 20 chr11 119073 119171 -148664301 - L3 LINE CR1 -12 1565 1467 766 224 12 9 chr11 125700 126022 -148657450 + (TCCA)n Simple_repeat Simple_repeat 1 323 0 332 263 0 0 chr11 126052 126189 -148657283 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 1652 145 106 0 chr11 127692 127974 -148655498 + AluSx SINE Alu 1 312 0 309 385 70 45 chr11 127994 128306 -148655166 + L1MEd LINE L1 841 1160 -4959 365 328 87 45 chr11 128928 129263 -148654209 + L1MEd LINE L1 758 1106 -5013 195 300 0 43 chr11 129796 129866 -148653606 - L2 LINE L2 -20 3293 3227 2569 42 0 3 chr11 130340 130650 -148652822 - AluY SINE Alu -2 309 1 246 240 0 0 chr11 144843 144893 -148638579 + MIR3 SINE MIR 109 158 -50 289 225 8 4 chr11 147491 147738 -148635734 + (CA)n Simple_repeat Simple_repeat 1 248 0 471 285 26 47 chr11 148541 148734 -148634738 + MER53 DNA DNA 1 189 0 189 167 0 0 chr11 150016 150070 -148633402 + (CACAC)n Simple_repeat Simple_repeat 5 58 0 553 235 92 31 chr11 150793 150989 -148632483 - MER63A DNA MER1_type -2 208 1 2186 103 0 13 chr11 151011 151321 -148632151 - AluSp SINE Alu -7 306 1 21 0 0 0 chr11 156490 156511 -148626961 + AT_rich Low_complexity Low_complexity 1 21 0 396 40 0 0 chr11 156601 156651 -148626821 + (GGA)n Simple_repeat Simple_repeat 1 50 0 944 242 60 4 chr11 158075 158356 -148625116 - MLT1B LTR MaLR -93 297 1 233 202 40 40 chr11 159783 159882 -148623590 - MLT1J2 LTR MaLR -88 362 264 221 234 0 0 chr11 161122 161169 -148622303 - L2 LINE L2 -1 3312 3266 180 0 0 0 chr11 161845 161865 -148621607 + (GA)n Simple_repeat Simple_repeat 1 20 0 331 312 70 28 chr11 162828 163322 -148620150 - MLT1H1 LTR MaLR -15 540 28 555 321 29 7 chr11 163508 163782 -148619690 - MLT2F LTR ERVL -4 659 380 789 297 50 28 chr11 163896 164293 -148619179 + MLT1C LTR MaLR 53 458 -9 1099 210 20 0 chr11 164531 164783 -148618689 - MLT1B LTR MaLR -6 384 128 728 276 107 48 chr11 165111 165531 -148617941 + MLT1C LTR MaLR 17 461 -6 2302 73 20 0 chr11 166381 166683 -148616789 + AluY SINE Alu 2 309 -2 3699 140 42 74 chr11 166934 167610 -148615862 - LTR8 LTR ERV1 -2 689 36 2207 119 0 0 chr11 167610 167920 -148615552 - AluSq SINE Alu -3 310 1 3699 140 42 74 chr11 167920 167955 -148615517 - LTR8 LTR ERV1 -655 36 1 387 0 0 0 chr11 179842 179885 -148603587 + (TG)n Simple_repeat Simple_repeat 1 43 0 211 308 15 0 chr11 180034 180099 -148603373 + C-rich Low_complexity Low_complexity 1 66 0 453 147 0 0 chr11 183900 183995 -148599477 + (CAGCC)n Simple_repeat Simple_repeat 4 98 0 891 129 0 0 chr11 183995 184173 -148599299 + (CCCTG)n Simple_repeat Simple_repeat 3 180 0 264 77 0 0 chr11 184172 184211 -148599261 + (CAGCC)n Simple_repeat Simple_repeat 1 39 0 * 1841 168 27 0 chr11 185089 185386 -148598086 + AluJo SINE Alu 1 305 -7 390 292 28 35 chr11 185922 186066 -148597406 - MIR SINE MIR -118 144 2 2183 103 7 0 chr11 192659 192961 -148590511 - AluSp SINE Alu -7 306 3 376 219 10 0 chr11 193728 193824 -148589648 - L1MB3 LINE L1 -58 6125 6029 1970 125 54 0 chr11 204931 205227 -148578245 - AluSx SINE Alu 0 312 1 1257 280 104 10 chr11 209633 210122 -148573350 + L1MB7 LINE L1 5650 6184 0 321 250 104 0 chr11 218995 219091 -148564381 + MIR SINE MIR 23 128 -134 23 68 0 0 chr11 223468 223512 -148559960 + GC_rich Low_complexity Low_complexity 1 44 0 220 173 29 72 chr11 223980 224119 -148559353 + (CCGCG)n Simple_repeat Simple_repeat 2 134 0 * 380 228 31 19 chr11 224034 224196 -148559276 + (CCCCG)n Simple_repeat Simple_repeat 3 166 0 219 254 16 70 chr11 224226 224411 -148559061 + C-rich Low_complexity Low_complexity 4 178 0 302 100 67 0 chr11 225985 226045 -148557427 - MER53 DNA DNA -1 188 125 2255 100 0 19 chr11 226049 226360 -148557112 - AluSc SINE Alu -4 305 1 210 37 0 0 chr11 226361 226388 -148557084 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1856 146 14 0 chr11 226388 226675 -148556797 - AluSx SINE Alu -21 291 1 794 187 74 20 chr11 226691 226894 -148556578 - L1MC2 LINE L1 -11 6333 6120 * 2247 242 23 0 chr11 226893 227468 -148556004 - L1MC1 LINE L1 -248 6085 5498 180 77 0 0 chr11 227959 227985 -148555487 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 180 125 0 0 chr11 228004 228036 -148555436 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 189 154 0 0 chr11 228164 228203 -148555269 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 384 22 0 0 chr11 228806 228851 -148554621 + (TG)n Simple_repeat Simple_repeat 2 46 0 315 156 21 104 chr11 228851 228936 -148554536 - FRAM SINE Alu -152 150 72 1994 138 3 3 chr11 279176 279459 -148504013 - AluSx SINE Alu -29 283 1 774 124 0 83 chr11 279478 279623 -148503849 - FLAM_C SINE Alu 0 133 1 874 280 94 9 chr11 279630 280052 -148503420 - L1MC1 LINE L1 -864 5282 4785 664 250 30 0 chr11 280052 280220 -148503252 - MER20 DNA MER1_type 0 219 47 467 207 0 0 chr11 280236 280323 -148503149 - MLT1B LTR MaLR -15 375 289 866 217 0 17 chr11 280323 280503 -148502969 - AluSx SINE Alu -133 179 3 1347 256 37 53 chr11 280587 281207 -148502265 - L1MC1 LINE L1 -2508 3638 3029 617 225 0 0 chr11 281214 281334 -148502138 - AluJb SINE Alu -8 304 185 2185 104 24 0 chr11 281875 282163 -148501309 - AluSx SINE Alu -16 296 2 243 292 44 9 chr11 282784 282897 -148500575 - L1M4 LINE L1 -2587 3559 3443 1014 121 0 7 chr11 282944 283084 -148500388 - AluSg/x SINE Alu -10 302 164 414 84 0 92 chr11 283288 283430 -148500042 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 1829 160 43 62 chr11 283787 284205 -148499267 - MLT2D LTR ERVL 0 414 5 207 230 150 40 chr11 284617 284717 -148498755 + L2 LINE L2 3161 3271 -1 460 117 0 0 chr11 285633 285693 -148497779 + Alu SINE Alu 234 293 -19 1045 208 0 0 chr11 285711 285894 -148497578 - AluJb SINE Alu -5 307 125 1899 116 3 47 chr11 285921 286222 -148497250 - AluSx SINE Alu -24 288 1 327 303 101 8 chr11 286268 286387 -148497085 - L1M4 LINE L1 -3352 2794 2665 2152 116 0 13 chr11 287730 288032 -148495440 + AluSx SINE Alu 1 298 -14 1971 250 82 27 chr11 288105 288746 -148494726 - L1ME1 LINE L1 -141 6094 5413 315 0 0 0 chr11 288746 288781 -148494691 + (TA)n Simple_repeat Simple_repeat 1 35 0 1971 250 82 27 chr11 288781 288807 -148494665 - L1ME1 LINE L1 -822 5413 5390 2103 120 3 42 chr11 288807 289116 -148494356 - AluSx SINE Alu -15 297 1 3832 136 3 8 chr11 289132 289742 -148493730 + L1PB3 LINE L1 5546 6152 -2 22 35 0 0 chr11 289742 289771 -148493701 + AT_rich Low_complexity Low_complexity 1 29 0 308 211 13 40 chr11 289771 289817 -148493655 - L1ME1 LINE L1 -2449 5405 5360 1367 240 3 6 chr11 289817 290130 -148493342 - AluSx SINE Alu 0 312 1 308 211 13 40 chr11 290130 290159 -148493313 - L1ME1 LINE L1 -2494 5360 5332 21 0 0 0 chr11 290159 290180 -148493292 + AT_rich Low_complexity Low_complexity 1 21 0 1328 218 12 65 chr11 290308 290614 -148492858 - L1ME1 LINE L1 -2008 4207 3927 2505 65 0 34 chr11 290614 290936 -148492536 - AluY SINE Alu 0 311 1 1328 218 12 65 chr11 290936 291041 -148492431 - L1ME1 LINE L1 -2288 3927 3818 786 270 40 30 chr11 291043 291339 -148492133 - L1M4 LINE L1 -761 5385 5087 999 204 0 0 chr11 291344 291511 -148491961 + FRAM SINE Alu 1 163 -13 1416 217 72 21 chr11 291512 291940 -148491532 - L1M4 LINE L1 -1059 5087 4638 692 208 8 0 chr11 291942 292067 -148491405 + FLAM_C SINE Alu 2 127 -16 892 267 24 3 chr11 292094 292390 -148491082 - L1M4 LINE L1 -1503 4643 4342 2406 114 0 0 chr11 292396 292703 -148490769 - AluSx SINE Alu -5 307 1 1657 230 41 47 chr11 292710 293201 -148490271 - L1ME1 LINE L1 -4008 2388 1899 2247 117 0 0 chr11 293201 293499 -148489973 + AluSx SINE Alu 1 298 -14 1657 230 41 47 chr11 293499 293563 -148489909 - L1ME1 LINE L1 -4497 1899 1836 195 42 0 0 chr11 293970 293994 -148489478 + (A)n Simple_repeat Simple_repeat 1 24 0 1216 263 51 57 chr11 293996 294643 -148488829 - L1ME1 LINE L1 -4599 1797 1155 2503 88 3 0 chr11 294644 294952 -148488520 - AluY SINE Alu 0 311 3 846 105 0 0 chr11 294952 295057 -148488415 - AluSg/x SINE Alu -14 296 192 320 89 13 0 chr11 295158 295209 -148488263 - Alu SINE Alu -259 41 1 2073 223 58 81 chr11 295233 296014 -148487458 - L1ME1 LINE L1 -5300 1096 334 1720 105 42 0 chr11 296019 296258 -148487214 - AluSx SINE Alu -12 300 52 2045 78 0 0 chr11 296451 296706 -148486766 - AluY SINE Alu 0 311 57 183 42 0 0 chr11 296981 297005 -148486467 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2017 98 49 0 chr11 297005 297271 -148486201 - AluSx SINE Alu -33 279 1 707 301 105 18 chr11 297952 298145 -148485327 - L2 LINE L2 -756 2558 2383 2306 80 6 16 chr11 298145 298456 -148485016 - AluSx SINE Alu 0 312 5 707 301 105 18 chr11 298456 298654 -148484818 - L2 LINE L2 -931 2383 2133 298 263 50 0 chr11 298838 298937 -148484535 + MIR SINE MIR 2 105 -157 2275 106 0 13 chr11 298982 299283 -148484189 - AluSx SINE Alu -15 297 1 404 301 76 42 chr11 299356 299618 -148483854 + L1M4 LINE L1 5063 5333 -813 373 300 28 22 chr11 299751 300095 -148483377 - L1M3 LINE L1 -728 5452 5106 403 256 23 16 chr11 300154 300283 -148483189 + L1ME3A LINE L1 6011 6140 -30 855 240 413 7 chr11 300740 301178 -148482294 + L1MC4 LINE L1 6469 7084 -958 964 216 90 50 chr11 301276 301424 -148482048 + L1MC4 LINE L1 7322 7463 -579 1292 194 107 38 chr11 301424 301769 -148481703 + MLT1A2 LTR MaLR 2 370 -4 964 216 90 50 chr11 301769 301898 -148481574 + L1MC4 LINE L1 7463 7610 -432 341 248 67 89 chr11 301916 302186 -148481286 - L1M4 LINE L1 -926 5289 5026 342 321 17 46 chr11 302615 302855 -148480617 - L1M4 LINE L1 -1193 5022 4789 1703 271 79 61 chr11 302856 303377 -148480095 - L1MEc LINE L1 -2734 3481 2971 2510 47 0 14 chr11 303377 303674 -148479798 - AluY SINE Alu -17 294 2 1703 271 79 61 chr11 303674 303697 -148479775 - L1MEc LINE L1 -3244 2971 2950 2061 108 34 14 chr11 303697 303993 -148479479 - AluSx SINE Alu -10 302 1 1703 271 79 61 chr11 303993 304595 -148478877 - L1MEc LINE L1 -3265 2950 2360 1608 98 0 0 chr11 304595 304798 -148478674 - AluSg/x SINE Alu -24 286 84 1862 151 0 30 chr11 304800 305104 -148478368 - AluJo SINE Alu -17 295 1 1703 271 79 61 chr11 305104 305300 -148478172 - L1MEc LINE L1 -3855 2360 2169 2008 119 7 4 chr11 305300 305598 -148477874 - AluSg SINE Alu 0 299 1 1703 271 79 61 chr11 305598 306195 -148477277 - L1MEc LINE L1 -4046 2169 1512 233 278 9 56 chr11 306424 306532 -148476940 - MER103 DNA DNA -45 121 19 418 292 96 41 chr11 306678 306897 -148476575 - L1MEc LINE L1 -5162 1043 813 368 36 0 18 chr11 307437 307493 -148475979 - AluY SINE Alu 0 301 247 226 184 41 0 chr11 307471 307520 -148475952 - Alu SINE Alu -250 51 1 * 850 101 0 0 chr11 307546 307655 -148475817 + AluSq/x SINE Alu 3 111 -201 1934 64 4 0 chr11 307655 307889 -148475583 - AluY SINE Alu -76 235 1 1430 112 5 0 chr11 308360 308548 -148474924 + AluSx SINE Alu 1 189 -123 636 181 206 0 chr11 308649 308804 -148474668 - MER34 LTR ERV1 -316 226 40 2091 89 62 3 chr11 308815 309107 -148474365 - AluSc SINE Alu 0 309 1 529 238 177 40 chr11 309188 309663 -148473809 - L1M4 LINE L1 -2848 3298 2759 585 281 14 36 chr11 309664 309764 -148473708 - L1M4 LINE L1 -2479 3667 3566 2234 124 0 6 chr11 309764 310079 -148473393 - AluSq SINE Alu 0 313 1 585 281 14 36 chr11 310079 310199 -148473273 - L1M4 LINE L1 -2580 3566 3452 390 316 109 41 chr11 310496 310889 -148472583 - L1MEc LINE L1 -5611 594 175 457 297 44 27 chr11 311025 311298 -148472174 + L1ME1 LINE L1 2719 3001 -3145 1493 226 30 6 chr11 311298 311634 -148471838 + MER2 DNA MER2_type 1 344 0 457 297 44 27 chr11 311634 311727 -148471745 + L1ME1 LINE L1 3001 3091 -3055 189 139 0 0 chr11 313175 313218 -148470254 + (T)n Simple_repeat Simple_repeat 1 43 0 2393 80 0 22 chr11 313609 313921 -148469551 - AluY SINE Alu -6 305 1 669 317 24 66 chr11 314098 314521 -148468951 + L1ME1 LINE L1 3056 3460 -2686 301 338 60 0 chr11 314649 314782 -148468690 + L1ME1 LINE L1 3623 3763 -2383 1915 53 4 15 chr11 315011 315277 -148468195 + L1PA4 LINE L1 5889 6151 -4 2343 101 7 7 chr11 315392 315700 -148467772 - AluSq SINE Alu -5 308 1 454 250 50 55 chr11 315701 315921 -148467551 - L1M4 LINE L1 -2059 4087 3869 735 223 52 24 chr11 316212 316423 -148467049 + L1ME1 LINE L1 4915 5131 -1015 2380 91 3 0 chr11 316428 316725 -148466747 + AluSx SINE Alu 1 298 -14 889 248 40 0 chr11 316730 316952 -148466520 + L1ME1 LINE L1 5601 5831 -335 1762 196 49 61 chr11 316952 317463 -148466009 + MLT1D LTR MaLR 1 505 0 575 253 17 36 chr11 317505 317722 -148465750 + L1ME1 LINE L1 5820 6024 -154 985 208 81 0 chr11 317850 318071 -148465401 - Tigger3(Golem) DNA MER2_type -1 3028 2790 375 311 0 0 chr11 318084 318187 -148465285 - Tigger3(Golem) DNA MER2_type -2894 135 33 1971 167 0 16 chr11 318209 318526 -148464946 + AluJo SINE Alu 1 312 0 1861 160 82 3 chr11 319222 319578 -148463894 + MLT1B LTR MaLR 1 384 -6 1439 242 111 15 chr11 320715 321174 -148462298 - MLT1D LTR MaLR 0 505 3 270 226 0 59 chr11 323840 323942 -148459530 + L2 LINE L2 3139 3234 -38 187 237 68 0 chr11 324748 324807 -148458665 - MIR SINE MIR -92 170 108 294 247 67 11 chr11 324873 324962 -148458510 - MIR SINE MIR -92 170 77 207 272 19 76 chr11 326066 326224 -148457248 + (CACCC)n Simple_repeat Simple_repeat 1 149 0 222 287 52 9 chr11 326455 326570 -148456902 + (CAGCC)n Simple_repeat Simple_repeat 1 120 0 1598 234 58 11 chr11 326877 327326 -148456146 + MLT1D LTR MaLR 2 471 -34 321 68 0 0 chr11 328137 328181 -148455291 + (CA)n Simple_repeat Simple_repeat 2 45 0 4948 172 31 14 chr11 328183 328567 -148454905 - L1MC2 LINE L1 -114 6230 5854 1732 170 7 3 chr11 328567 328867 -148454605 - AluJb SINE Alu -11 301 1 4948 172 31 14 chr11 328867 329509 -148453963 - L1MC2 LINE L1 -490 5854 5188 232 158 0 0 chr11 329730 329768 -148453704 - L1MC2 LINE L1 -1355 4791 4754 1097 245 129 52 chr11 329779 330022 -148453450 + L2 LINE L2 1824 2047 -1267 2181 119 20 0 chr11 330022 330324 -148453148 - AluSx SINE Alu -4 308 1 1097 245 129 52 chr11 330324 330709 -148452763 + L2 LINE L2 2047 2500 -814 4682 90 21 33 chr11 330709 330880 -148452592 - LTR8 LTR ERV1 0 691 520 351 0 0 0 chr11 330880 330919 -148452553 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 676 36 0 0 chr11 330920 331003 -148452469 - L1PA5 LINE L1 -12 6142 6060 4682 90 21 33 chr11 331003 331527 -148451945 - LTR8 LTR ERV1 -170 521 2 265 246 14 0 chr11 331531 331600 -148451872 + L2 LINE L2 2497 2566 -748 2141 113 3 0 chr11 331740 332031 -148451441 + AluSq SINE Alu 2 293 -20 193 346 13 13 chr11 332235 332313 -148451159 + L2 LINE L2 3234 3311 -2 295 246 0 0 chr11 333157 333222 -148450250 - L2 LINE L2 -3 3310 3246 220 292 0 0 chr11 334117 334165 -148449307 + L2 LINE L2 3003 3050 -263 844 87 46 9 chr11 335130 335350 -148448122 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 922 103 50 0 chr11 335368 335826 -148447646 + (TCCA)n Simple_repeat Simple_repeat 1 480 0 202 231 0 0 chr11 336298 336337 -148447135 + T-rich Low_complexity Low_complexity 2 40 0 1239 227 94 6 chr11 336592 336922 -148446550 - MLT1A1 LTR MaLR -6 359 1 1433 286 91 20 chr11 337354 337517 -148445955 + L2 LINE L2 2036 2186 -1128 1819 140 81 69 chr11 337517 337939 -148445533 - MSTA LTR MaLR -1 427 1 1433 286 91 20 chr11 337939 338352 -148445120 + L2 LINE L2 2186 2667 -647 2453 107 0 0 chr11 338352 338660 -148444812 - AluSg SINE Alu -2 308 1 1433 286 91 20 chr11 338660 338739 -148444733 + L2 LINE L2 2667 2739 -575 642 282 78 103 chr11 338784 339281 -148444191 + L2 LINE L2 2827 3311 -2 520 274 73 6 chr11 339559 339596 -148443876 + L2 LINE L2 2422 2455 -859 2331 72 23 7 chr11 339596 339901 -148443571 - AluSg SINE Alu 0 310 1 520 274 73 6 chr11 339901 340027 -148443445 + L2 LINE L2 2455 2596 -718 398 215 0 0 chr11 340246 340325 -148443147 + Tigger5 DNA MER2_type 1 79 -2244 314 274 0 0 chr11 340380 340453 -148443019 + Tigger5 DNA MER2_type 2248 2320 -3 768 291 34 17 chr11 341057 341291 -148442181 - MIR SINE MIR -24 238 1 457 337 65 42 chr11 341314 341623 -148441849 + L1M4 LINE L1 4254 4569 -1577 658 107 76 0 chr11 341822 342158 -148441314 + (CACTC)n Simple_repeat Simple_repeat 1 361 0 254 323 10 0 chr11 342244 342343 -148441129 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 601 271 60 35 chr11 342872 343156 -148440316 - L1MC4 LINE L1 -1 8041 7751 309 320 58 41 chr11 344244 344416 -148439056 + MIR SINE MIR 80 254 -8 218 273 0 0 chr11 346216 346271 -148437201 + L2 LINE L2 3259 3313 0 980 162 0 0 chr11 346442 346596 -148436876 + AluJb SINE Alu 147 300 -12 513 188 12 6 chr11 346642 346807 -148436665 + (TG)n Simple_repeat Simple_repeat 1 166 0 242 221 0 44 chr11 346811 346879 -148436593 + (TATG)n Simple_repeat Simple_repeat 4 68 0 346 240 17 17 chr11 346902 347081 -148436391 + (TG)n Simple_repeat Simple_repeat 2 180 0 461 225 17 6 chr11 347121 347299 -148436173 + (TG)n Simple_repeat Simple_repeat 1 180 0 562 183 25 18 chr11 347317 347760 -148435712 + (TG)n Simple_repeat Simple_repeat 1 446 0 288 279 66 20 chr11 348316 348513 -148434959 + L1MEc LINE L1 1277 1482 -4914 728 142 15 0 chr11 348755 348889 -148434583 - MER4D LTR ERV1 -13 890 755 773 197 0 15 chr11 348894 349031 -148434441 - AluJo SINE Alu -177 135 1 949 146 32 5 chr11 349031 349216 -148434256 - MER4D LTR ERV1 -133 739 550 989 51 0 0 chr11 349223 349340 -148434132 + AluSx SINE Alu 16 132 -180 383 277 0 43 chr11 349351 349445 -148434027 + L1MC4 LINE L1 6614 6703 -1339 * 386 240 0 62 chr11 349385 349481 -148433991 - L1MC4 LINE L1 -1339 6703 6614 * 423 251 4 24 chr11 349460 349586 -148433886 - L1MCa LINE L1 -1339 6983 1995 239 255 0 0 chr11 349590 349637 -148433835 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1394 93 0 0 chr11 349637 349819 -148433653 + AluSx SINE Alu 123 304 -6 920 170 6 11 chr11 349846 350028 -148433444 - MER4D LTR ERV1 -463 409 229 428 221 71 0 chr11 350073 350213 -148433259 - MER4D LTR ERV1 -753 150 1 21 0 0 0 chr11 350495 350516 -148432956 + GC_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr11 350536 350591 -148432881 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 312 296 29 48 chr11 352835 353041 -148430431 - L2 LINE L2 -822 2492 2291 301 189 0 95 chr11 359801 359970 -148423502 + CT-rich Low_complexity Low_complexity 3 155 0 312 163 0 56 chr11 359997 360157 -148423315 + (TCCA)n Simple_repeat Simple_repeat 2 152 0 234 0 0 0 chr11 360580 360606 -148422866 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chr11 365378 365421 -148418051 + GC_rich Low_complexity Low_complexity 1 43 0 399 333 6 6 chr11 368073 368238 -148415234 + (TG)n Simple_repeat Simple_repeat 2 166 0 276 275 18 0 chr11 368257 368428 -148415044 + (TG)n Simple_repeat Simple_repeat 1 174 0 374 326 17 11 chr11 368509 368687 -148414785 + (TG)n Simple_repeat Simple_repeat 2 180 0 268 278 17 6 chr11 368719 369084 -148414388 + (TG)n Simple_repeat Simple_repeat 1 369 0 224 280 222 0 chr11 369687 369777 -148413695 + MIR SINE MIR 29 137 -71 183 129 0 0 chr11 369888 369919 -148413553 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 692 146 0 0 chr11 370609 370719 -148412753 + AluSg/x SINE Alu 200 309 -1 334 162 34 179 chr11 370719 370836 -148412636 + L1MD1 LINE L1 3185 3284 -2862 803 75 37 0 chr11 370845 370952 -148412520 - AluSq/x SINE Alu -201 111 1 1055 269 0 7 chr11 370954 371236 -148412236 + L1MC1 LINE L1 6039 6318 -15 1159 247 36 50 chr11 371257 371531 -148411941 + L1MD1 LINE L1 4397 4662 -1484 4829 35 0 9 chr11 371531 372102 -148411370 + L1PA5 LINE L1 5589 6154 0 1159 247 36 50 chr11 372102 372329 -148411143 + L1MD1 LINE L1 4662 4891 -1255 764 287 81 12 chr11 372335 372656 -148410816 - MLT1A1 LTR MaLR -17 348 6 515 246 16 26 chr11 372662 372853 -148410619 + L1MD1 LINE L1 4889 5077 -1069 778 227 68 0 chr11 373203 373410 -148410062 + L1M4b LINE L1 94 314 -6545 1557 197 34 151 chr11 373410 374081 -148409391 - LTR8A LTR ERV1 0 727 135 3059 188 85 26 chr11 374087 374955 -148408517 + LTR28 LTR ERV1 1 1020 0 392 232 0 42 chr11 374955 375049 -148408423 - LTR8 LTR ERV1 -572 119 30 2250 265 53 19 chr11 375063 375817 -148407655 + L1M4b LINE L1 311 1090 -5769 1164 220 39 16 chr11 375928 376237 -148407235 + L1MD1 LINE L1 5672 5987 -255 942 189 31 15 chr11 376244 376440 -148407032 + L1MD1 LINE L1 6044 6242 0 1309 303 69 9 chr11 376446 377023 -148406449 + L1MEc LINE L1 31 642 -5754 1183 22 0 0 chr11 377079 377213 -148406259 + AluY SINE Alu 1 134 -177 2494 58 0 0 chr11 377213 377521 -148405951 + AluY SINE Alu 1 308 -3 1082 247 164 0 chr11 377524 377897 -148405575 + L1MEc LINE L1 2673 3106 -3109 1017 199 11 5 chr11 377904 378090 -148405382 + AluJo SINE Alu 1 187 -125 973 305 74 41 chr11 378250 378316 -148405156 - L1MCc LINE L1 -4889 1534 1472 2216 117 0 0 chr11 378316 378624 -148404848 - AluSg SINE Alu -2 308 1 973 305 74 41 chr11 378624 379001 -148404471 - L1MCc LINE L1 -4951 1472 1067 2133 113 0 7 chr11 379001 379302 -148404170 - AluSg SINE Alu -11 299 1 973 305 74 41 chr11 379302 379398 -148404074 - L1MCc LINE L1 -5356 1067 976 273 214 0 18 chr11 379399 379455 -148404017 - L2 LINE L2 -1 3312 3258 21 0 0 0 chr11 379911 379932 -148403540 + AT_rich Low_complexity Low_complexity 1 21 0 2055 135 0 3 chr11 379945 380248 -148403224 + AluSq SINE Alu 1 302 -11 251 282 96 5 chr11 380261 380449 -148403023 + L1M4 LINE L1 4490 4694 -1452 314 340 105 0 chr11 380466 380628 -148402844 + L1M4 LINE L1 4640 4818 -1328 403 356 104 13 chr11 380913 381143 -148402329 + L1M4 LINE L1 5091 5341 -805 287 96 0 58 chr11 381503 381555 -148401917 - AluSp SINE Alu -134 169 121 845 145 8 0 chr11 381579 381703 -148401769 - AluSq/x SINE Alu -187 125 1 340 336 109 51 chr11 381823 381840 -148401632 - L1M4 LINE L1 -1949 4197 4182 2127 129 3 0 chr11 381840 382150 -148401322 - AluSx SINE Alu -1 311 1 340 336 109 51 chr11 382150 382444 -148401028 - L1M4 LINE L1 -1964 4182 3868 254 306 19 28 chr11 384223 384331 -148399141 - LTR16C LTR ERVL 0 491 385 510 226 30 0 chr11 384696 384829 -148398643 + GA-rich Low_complexity Low_complexity 2 138 0 504 168 0 0 chr11 384831 384932 -148398540 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 1202 183 9 5 chr11 384944 385168 -148398304 - LTR55 LTR ERV -322 226 2 253 250 37 56 chr11 386989 387097 -148396375 + MLT1A1 LTR MaLR 51 156 -209 547 281 0 0 chr11 387109 387244 -148396228 - MLT-int LTR MaLR -1315 420 286 778 100 9 0 chr11 387245 387355 -148396117 + AluJb SINE Alu 1 111 -201 982 163 6 0 chr11 387440 387600 -148395872 + AluJb SINE Alu 135 295 -17 1030 202 59 29 chr11 387600 387872 -148395600 - MLT-int LTR MaLR -1440 295 16 617 234 24 0 chr11 387929 388096 -148395376 + MLT1A1 LTR MaLR 186 356 -9 1157 206 45 86 chr11 388611 388970 -148394502 + MLT2D LTR ERVL 21 364 -50 322 358 86 55 chr11 388999 389256 -148394216 - L1MC4 LINE L1 -1339 6703 6439 * 327 300 25 69 chr11 389099 389259 -148394213 + L1MCa LINE L1 1915 2067 -4359 25 23 0 23 chr11 389264 389283 -148394189 + AT_rich Low_complexity Low_complexity 1 19 -23 2091 117 3 0 chr11 389283 389573 -148393899 - AluSx SINE Alu -21 291 1 25 23 0 23 chr11 389573 389596 -148393876 + AT_rich Low_complexity Low_complexity 19 42 0 2225 56 40 10 chr11 391048 391403 -148392069 - AluY SINE Alu 0 364 1 207 0 0 0 chr11 391588 391611 -148391861 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 373 187 107 0 chr11 391751 391901 -148391571 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 290 133 107 0 chr11 391913 392063 -148391409 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 229 144 106 0 chr11 392111 392243 -148391229 + (CACAC)n Simple_repeat Simple_repeat 5 150 0 247 151 107 0 chr11 392255 392414 -148391058 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 338 186 16 81 chr11 392442 392566 -148390906 + MLT2D LTR ERVL 293 408 -6 479 143 0 20 chr11 393640 393738 -148389734 + LTR52 LTR ERVL 1 96 -325 381 248 48 0 chr11 393864 393989 -148389483 + LTR52 LTR ERVL 288 418 -3 2124 117 0 0 chr11 393997 394325 -148389147 - AluSx SINE Alu 0 312 1 21 57 0 0 chr11 396074 396109 -148387363 + GC_rich Low_complexity Low_complexity 1 35 0 572 167 0 16 chr11 398325 398451 -148385021 + CT-rich Low_complexity Low_complexity 4 127 0 1335 293 47 11 chr11 398469 398911 -148384561 - L1MB3 LINE L1 -28 6155 5688 1474 221 168 20 chr11 398911 399309 -148384163 - MSTB2 LTR MaLR 0 457 1 1335 293 47 11 chr11 399309 399415 -148384057 - L1MB3 LINE L1 -495 5688 5587 295 329 16 36 chr11 399448 399700 -148383772 + MLT1J LTR MaLR 232 478 -33 181 291 87 19 chr11 402886 402989 -148380483 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr11 404484 404510 -148378962 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 404670 404692 -148378780 + GC_rich Low_complexity Low_complexity 1 22 0 256 348 39 0 chr11 405716 405855 -148377617 - MIR SINE MIR -60 148 43 286 293 69 0 chr11 406132 406248 -148377224 + MER45A DNA AcHobo 55 178 0 269 55 16 142 chr11 407018 407201 -148376271 + (TCCTG)n Simple_repeat Simple_repeat 5 164 0 201 75 0 149 chr11 407256 407457 -148376015 + (TCCTG)n Simple_repeat Simple_repeat 1 171 0 284 85 0 144 chr11 407493 407611 -148375861 + (TCCTG)n Simple_repeat Simple_repeat 1 101 0 1177 227 70 23 chr11 407829 408217 -148375255 + MLT1C LTR MaLR 61 466 -1 210 37 0 0 chr11 409451 409478 -148373994 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3374 98 31 2 chr11 409478 409955 -148373517 - L1PA13 LINE L1 -13 6150 5660 1226 169 0 49 chr11 409955 410144 -148373328 + L1P LINE L1 3758 3932 -2214 2179 93 0 35 chr11 410144 410338 -148373134 - AluSx SINE Alu -11 301 121 2435 66 0 10 chr11 410338 410641 -148372831 - AluY SINE Alu -10 301 2 2179 93 0 35 chr11 410641 410758 -148372714 - AluSx SINE Alu -191 121 1 1226 169 0 49 chr11 410758 410834 -148372638 + L1P LINE L1 3932 4010 -2136 201 353 88 24 chr11 411005 411175 -148372297 - MIR SINE MIR -68 194 14 784 282 60 19 chr11 412071 412387 -148371085 - L1ME3A LINE L1 -6 6164 5836 347 328 33 61 chr11 412454 412634 -148370838 + L1MEd LINE L1 649 823 -5707 629 323 37 21 chr11 412650 413025 -148370447 + L1MEd LINE L1 780 1160 -5370 347 306 153 0 chr11 413179 413323 -148370149 + L1MEd LINE L1 2077 2242 -4298 981 278 65 10 chr11 413411 413796 -148369676 + L1MEd LINE L1 3563 3968 -2572 332 239 0 0 chr11 413847 413914 -148369558 + L1M4 LINE L1 3130 3196 -2950 8097 68 12 4 chr11 415457 416456 -148367016 - LTR13 LTR ERVK 0 1007 1 232 105 0 58 chr11 417773 417859 -148365613 + (GGGTG)n Simple_repeat Simple_repeat 5 85 0 380 156 0 39 chr11 417892 418071 -148365401 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 301 304 65 0 chr11 418218 418356 -148365116 + MER90 LTR ERV1 103 249 -326 227 264 214 0 chr11 418401 418583 -148364889 + MER90 LTR ERV1 344 564 -11 369 313 23 23 chr11 419620 419751 -148363721 - L2 LINE L2 -3 3310 3180 1901 133 59 0 chr11 420738 421024 -148362448 - AluSq SINE Alu -10 303 1 1802 200 99 16 chr11 421274 421310 -148362162 - MER45R DNA AcHobo -39 1542 1510 1980 157 0 0 chr11 421310 421615 -148361857 + AluSg SINE Alu 1 305 -5 1802 200 99 16 chr11 421615 422142 -148361330 - MER45R DNA AcHobo -71 1510 932 1976 223 80 62 chr11 422142 422271 -148361201 - L1MC3 LINE L1 -21 7764 7639 1986 116 4 0 chr11 422271 422548 -148360924 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 422554 422577 -148360895 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1976 223 80 62 chr11 422577 422588 -148360884 - L1MC3 LINE L1 -150 7635 7626 2177 127 0 0 chr11 422588 422896 -148360576 + AluSx SINE Alu 1 308 -4 1976 223 80 62 chr11 422896 423459 -148360013 - L1MC3 LINE L1 -159 7626 7040 808 153 0 0 chr11 423459 423583 -148359889 - AluSg/x SINE Alu 0 310 187 947 175 24 101 chr11 423583 423921 -148359551 - L1MC3 LINE L1 -742 7043 6732 2824 148 18 4 chr11 423964 424478 -148358994 + LTR43 LTR ERV1 1 521 -81 723 119 90 0 chr11 424468 424602 -148358870 + MER51B LTR ERV1 229 374 -3 * 947 217 83 0 chr11 425235 425475 -148357997 - MLT1C LTR MaLR 0 467 208 2619 153 12 12 chr11 425475 425892 -148357580 + L1PA15 LINE L1 5744 6160 -5 244 204 0 0 chr11 428255 428304 -148355168 - MER53 DNA DNA 0 189 141 24 32 0 0 chr11 429463 429494 -148353978 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chr11 430062 430097 -148353375 + (TC)n Simple_repeat Simple_repeat 1 35 0 423 239 193 6 chr11 430097 430273 -148353199 + MLT1F LTR MaLR 170 378 -164 2073 142 0 3 chr11 430329 430640 -148352832 + AluJo SINE Alu 1 310 -2 245 392 0 0 chr11 430757 430877 -148352595 + L1M4 LINE L1 3797 3916 -2230 383 323 63 67 chr11 431137 431360 -148352112 + L1MC5 LINE L1 2176 2397 -4029 1673 151 33 27 chr11 431463 431800 -148351672 - MER1B DNA MER1_type 0 339 1 642 371 80 42 chr11 431988 432602 -148350870 - HAL1b LINE L1 -656 692 56 2103 129 0 3 chr11 432750 433061 -148350411 + AluSx SINE Alu 1 310 -2 2554 42 0 10 chr11 433772 434085 -148349387 - AluY SINE Alu -1 310 1 2452 70 0 0 chr11 434296 434596 -148348876 - AluY SINE Alu -11 300 1 225 197 128 0 chr11 435339 435456 -148348016 + (CTGGGG)n Simple_repeat Simple_repeat 5 136 0 1786 58 0 22 chr11 436406 436629 -148346843 - AluY SINE Alu -9 302 85 714 210 98 28 chr11 437039 437349 -148346123 + L1MC5 LINE L1 3176 7483 -758 642 279 19 20 chr11 437474 437794 -148345678 + MLT1I LTR MaLR 53 405 -4 2485 77 0 22 chr11 438173 438485 -148344987 - AluY SINE Alu -6 305 1 1474 81 0 41 chr11 439513 439710 -148343762 + AluY SINE Alu 106 294 -17 1737 177 0 4 chr11 439726 440024 -148343448 + AluJo SINE Alu 13 309 0 844 126 0 63 chr11 440057 440200 -148343272 - FLAM_A SINE Alu -1 141 8 390 235 71 10 chr11 440373 440471 -148343001 + MLT2B1 LTR ERVL 383 486 -34 354 188 0 0 chr11 440504 440605 -148342867 + (TATG)n Simple_repeat Simple_repeat 2 102 0 675 174 0 0 chr11 440633 440811 -148342661 + (TATG)n Simple_repeat Simple_repeat 3 180 0 216 0 0 0 chr11 440812 440836 -148342636 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 766 257 200 57 chr11 440865 441340 -148342132 + L2 LINE L2 2038 2580 -734 3236 197 76 54 chr11 441427 442431 -148341041 - L1MD1 LINE L1 0 6242 5221 1658 205 20 0 chr11 442449 442752 -148340720 - AluJb SINE Alu 0 312 4 349 177 0 0 chr11 442901 442963 -148340509 + MLT1I LTR MaLR 347 408 -1 314 162 0 29 chr11 443037 443081 -148340391 - MLT2B1 LTR ERVL 0 520 477 182 88 0 29 chr11 443081 443115 -148340357 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 314 162 0 29 chr11 443115 443138 -148340334 - MLT2B1 LTR ERVL -43 477 455 702 148 17 0 chr11 443149 443545 -148339927 + (TAGA)n Simple_repeat Simple_repeat 1 402 0 1706 189 126 2 chr11 443549 443977 -148339495 - MLT2B1 LTR ERVL -39 481 1 1014 276 107 33 chr11 444404 444679 -148338793 + L1ME2 LINE L1 4607 4860 -1286 216 0 0 0 chr11 444679 444703 -148338769 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2045 117 4 0 chr11 444708 444989 -148338483 - AluSx SINE Alu -30 282 1 1014 276 107 33 chr11 444989 445305 -148338167 + L1ME2 LINE L1 4863 5248 -898 256 174 14 14 chr11 445305 445374 -148338098 + (TA)n Simple_repeat Simple_repeat 2 70 0 1146 277 55 23 chr11 445398 445929 -148337543 + L1ME2 LINE L1 5254 5801 -363 1992 172 86 21 chr11 445945 446376 -148337096 + LTR2B LTR ERV1 32 490 0 1220 104 21 16 chr11 446394 446587 -148336885 + AluJb SINE Alu 117 310 -2 425 258 172 18 chr11 446621 446842 -148336630 + L1ME2 LINE L1 5873 6127 -37 670 109 0 0 chr11 446842 446943 -148336529 + FRAM SINE Alu 66 166 -10 2155 106 18 0 chr11 446949 447232 -148336240 + AluSx SINE Alu 3 290 -22 25 40 0 20 chr11 447260 447280 -148336192 + AT_rich Low_complexity Low_complexity 1 20 -29 2219 115 0 7 chr11 447280 447575 -148335897 + AluSq SINE Alu 1 293 -20 25 40 0 20 chr11 447575 447604 -148335868 + AT_rich Low_complexity Low_complexity 20 49 0 205 186 0 0 chr11 447951 447994 -148335478 + T-rich Low_complexity Low_complexity 2 44 0 202 361 0 0 chr11 448919 449088 -148334384 + (CTG)n Simple_repeat Simple_repeat 3 171 0 1238 125 0 0 chr11 449818 449986 -148333486 - AluSg SINE Alu -142 168 1 2657 58 0 0 chr11 450290 450601 -148332871 + AluY SINE Alu 1 311 0 2304 99 0 10 chr11 450944 451257 -148332215 + AluY SINE Alu 1 310 -1 276 186 12 23 chr11 452285 452371 -148331101 + GA-rich Low_complexity Low_complexity 2 86 0 235 333 14 0 chr11 452569 452641 -148330831 - LTR40c LTR ERVL 0 465 393 334 270 107 6 chr11 454653 454812 -148328660 + L1MD2 LINE L1 4597 4771 -1375 765 154 8 15 chr11 454824 454954 -148328518 + FLAM_C SINE Alu 5 133 0 22 0 0 0 chr11 454954 454976 -148328496 + AT_rich Low_complexity Low_complexity 1 22 0 2314 113 3 0 chr11 455193 455504 -148327968 + AluSx SINE Alu 1 312 0 1119 144 0 28 chr11 455504 455684 -148327788 + AluSg/x SINE Alu 132 306 -4 2283 268 83 5 chr11 455686 456903 -148326569 + L1MD2 LINE L1 4982 6349 -10 233 287 87 9 chr11 456926 457041 -148326431 + L1MC4a LINE L1 5895 6018 -1790 23 33 0 0 chr11 457090 457120 -148326352 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 457791 457826 -148325646 + GC_rich Low_complexity Low_complexity 1 35 0 409 218 26 13 chr11 460254 460410 -148323062 + CT-rich Low_complexity Low_complexity 2 159 0 354 305 142 4 chr11 460519 460758 -148322714 - L1M4 LINE L1 -1559 4587 4316 * 2790 236 61 37 chr11 460753 461622 -148321850 - L1MB8 LINE L1 -1 6177 5288 2113 301 104 4 chr11 461621 461761 -148321711 - L1M4 LINE L1 -1818 4328 4203 * 189 0 0 0 chr11 461761 461782 -148321690 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2113 301 104 4 chr11 461782 462660 -148320812 - L1M4 LINE L1 -1943 4203 3208 189 0 0 0 chr11 463005 463026 -148320446 + (CA)n Simple_repeat Simple_repeat 2 22 0 301 212 158 68 chr11 463417 463563 -148319909 + L1M2 LINE L1 2744 2902 -3947 347 301 68 37 chr11 463699 463862 -148319610 + L1M2 LINE L1 3462 3629 -3219 1742 257 61 75 chr11 463960 465091 -148318381 - L1M4 LINE L1 -800 5346 4232 405 346 25 18 chr11 465062 465345 -148318127 - L1MEc LINE L1 -5007 1389 1105 * 571 113 0 0 chr11 465435 465515 -148317957 - AluJ/FRAM SINE Alu -17 295 216 3987 252 32 7 chr11 465617 466758 -148316714 + L1M2 LINE L1 3924 5093 -1755 24 53 0 0 chr11 466891 466929 -148316543 + AT_rich Low_complexity Low_complexity 1 38 0 1596 156 81 0 chr11 466975 467282 -148316190 - MER44D DNA MER2_type -3 606 5 23 33 0 0 chr11 467283 467313 -148316159 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 467451 467479 -148315993 + AT_rich Low_complexity Low_complexity 1 28 0 2226 99 0 3 chr11 467724 468008 -148315464 + AluSc SINE Alu 1 283 -26 342 0 0 0 chr11 468016 468054 -148315418 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1774 141 24 24 chr11 468307 468480 -148314992 - L1MC/D LINE L1 -772 5587 5412 2738 204 55 67 chr11 468480 469207 -148314265 - MER72 LTR ERV1 0 722 5 1774 141 24 24 chr11 469207 469367 -148314105 - L1MC/D LINE L1 -946 5413 5254 1875 264 43 17 chr11 469819 470523 -148312949 + L1M4 LINE L1 2685 3406 -2740 2573 124 142 0 chr11 470626 471071 -148312401 + Tigger3(Golem) DNA MER2_type 2520 3027 -2 197 304 69 0 chr11 472045 472147 -148311325 + MIR SINE MIR 27 135 -127 2047 120 10 20 chr11 473098 473399 -148310073 - AluJb SINE Alu -14 298 1 2377 106 0 0 chr11 473716 474017 -148309455 - AluY SINE Alu -10 301 1 968 152 21 21 chr11 474594 474785 -148308687 + L1MB4 LINE L1 5984 6174 -6 612 230 0 24 chr11 474807 474933 -148308539 + FLAM_C SINE Alu 1 123 -10 2405 71 3 0 chr11 474942 475236 -148308236 + AluY SINE Alu 1 295 -16 21 36 0 0 chr11 476945 476973 -148306499 + AT_rich Low_complexity Low_complexity 1 28 0 2217 122 3 0 chr11 477007 477301 -148306171 - AluSx SINE Alu -15 297 3 1004 125 0 0 chr11 477302 477438 -148306034 - AluSq/x SINE Alu -176 136 1 2479 135 37 23 chr11 478316 478752 -148304720 + MER83 LTR ERV1 1 442 -6 307 296 99 0 chr11 478752 478894 -148304578 + L1MC/D LINE L1 5443 5598 -2210 1898 234 23 41 chr11 479569 479673 -148303799 - L1MA9 LINE L1 -37 6275 6171 180 0 0 0 chr11 479673 479693 -148303779 + (TC)n Simple_repeat Simple_repeat 2 21 0 1898 234 23 41 chr11 479693 480100 -148303372 - L1MA9 LINE L1 -141 6171 5773 292 217 0 0 chr11 480097 480157 -148303315 + L1MA9 LINE L1 5933 5992 -320 * 2509 70 0 3 chr11 480379 480691 -148302781 - AluY SINE Alu 0 311 1 454 220 46 0 chr11 480691 480800 -148302672 + MLT1A2 LTR MaLR 260 373 -1 369 0 0 0 chr11 481022 481063 -148302409 + (TG)n Simple_repeat Simple_repeat 1 41 0 2088 132 0 3 chr11 483296 483600 -148299872 + AluSx SINE Alu 7 309 -3 608 38 0 12 chr11 483603 483683 -148299789 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 310 194 74 19 chr11 483687 483795 -148299677 - MLT1C LTR MaLR -52 415 302 249 59 0 0 chr11 483821 483855 -148299617 - MLT1C LTR MaLR -327 140 107 549 333 102 36 chr11 483982 484436 -148299036 - L1M4 LINE L1 -3921 2733 2310 1981 157 3 6 chr11 484436 484748 -148298724 - AluJo SINE Alu -1 311 1 549 333 102 36 chr11 484748 484782 -148298690 - L1M4 LINE L1 -4344 2310 1203 945 166 0 13 chr11 485108 485265 -148298207 - FRAM SINE Alu -22 154 1 221 344 16 33 chr11 485766 485888 -148297584 - MIR3 SINE MIR -84 124 5 1797 154 71 6 chr11 488770 489121 -148294351 - MSTB LTR MaLR 0 426 53 3766 137 4 46 chr11 489121 489973 -148293499 + L1PA16 LINE L1 5372 6161 -2 404 248 6 31 chr11 489969 490130 -148293342 - L1M4 LINE L1 -864 5282 5126 * 348 307 0 0 chr11 491422 491572 -148291900 + (CA)n Simple_repeat Simple_repeat 2 151 0 21 89 0 0 chr11 493636 493692 -148289780 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 493798 493830 -148289642 + GC_rich Low_complexity Low_complexity 1 32 0 37 97 0 0 chr11 493876 493990 -148289482 + GC_rich Low_complexity Low_complexity 1 114 0 207 139 0 0 chr11 493990 494026 -148289446 + (CCG)n Simple_repeat Simple_repeat 3 38 0 27 96 0 0 chr11 494040 494123 -148289349 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr11 496764 496788 -148286684 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 245 323 114 0 chr11 497249 497390 -148286082 + MER5A DNA MER1_type 1 167 -22 193 279 136 61 chr11 497274 497421 -148286051 - MER5A DNA MER1_type -27 162 5 * 183 339 31 0 chr11 497471 497536 -148285936 - MIR SINE MIR -124 84 18 226 344 98 8 chr11 498138 498260 -148285212 - L2 LINE L2 -223 3049 2917 827 193 13 13 chr11 498913 499063 -148284409 + AluJb SINE Alu 140 289 -23 309 348 11 0 chr11 499066 499155 -148284317 - L1MC4 LINE L1 -1339 6703 6614 * 348 293 38 0 chr11 499098 499204 -148284268 + L1MC4 LINE L1 1959 2068 -4358 * 432 223 10 26 chr11 499183 499286 -148284186 + L1MC4 LINE L1 1995 6983 -1339 302 241 17 0 chr11 499246 499304 -148284168 - L1MCa LINE L1 -4362 2064 2006 * 2123 113 0 0 chr11 499308 499591 -148283881 - AluSx SINE Alu -29 283 1 21 36 0 0 chr11 500139 500167 -148283305 + GC_rich Low_complexity Low_complexity 1 28 0 2096 80 21 11 chr11 501858 502145 -148281327 + AluSq SINE Alu 8 297 -16 781 187 42 37 chr11 502152 502366 -148281106 + L1MB3 LINE L1 5967 6181 -2 183 80 0 0 chr11 502916 502941 -148280531 + (CCGAG)n Simple_repeat Simple_repeat 5 29 0 21 89 0 0 chr11 504887 504943 -148278529 + GC_rich Low_complexity Low_complexity 1 56 0 341 236 7 0 chr11 505124 505272 -148278200 + (CA)n Simple_repeat Simple_repeat 1 149 0 366 252 78 9 chr11 505277 505392 -148278080 + L1MA9 LINE L1 6152 6274 -38 285 263 93 85 chr11 506073 506320 -148277152 + SN5 Other centromeric 1 249 -206 367 74 19 0 chr11 506617 506671 -148276801 + L1MC1 LINE L1 6276 6330 -3 404 340 28 49 chr11 506695 506942 -148276530 - L3 LINE CR1 -541 1036 795 1363 97 5 0 chr11 507135 507364 -148276108 - AluSg/x SINE Alu 0 326 97 279 277 29 36 chr11 507618 507755 -148275717 + MLT1A2 LTR MaLR 239 374 0 787 198 74 33 chr11 507961 508204 -148275268 + MLT1B LTR MaLR 8 260 -130 381 246 131 0 chr11 508433 508563 -148274909 - LTR67 LTR ERVL -1 556 410 234 355 0 0 chr11 508882 508975 -148274497 + MLT1J LTR MaLR 342 434 -77 243 0 0 0 chr11 509140 509167 -148274305 + (CTG)n Simple_repeat Simple_repeat 2 28 0 658 109 0 0 chr11 509688 509780 -148273692 + AluSp/q SINE Alu 210 301 -12 325 282 30 0 chr11 510195 510297 -148273175 + MIR SINE MIR 50 157 -63 2040 116 41 0 chr11 510710 511003 -148272469 + AluSx SINE Alu 1 305 -7 2023 122 28 0 chr11 511003 511291 -148272181 + AluSq SINE Alu 1 296 -17 224 224 0 20 chr11 511459 511508 -148271964 + CT-rich Low_complexity Low_complexity 4 51 0 506 236 202 55 chr11 511509 511801 -148271671 + MLT1J LTR MaLR 36 370 -141 1211 190 5 0 chr11 512230 512441 -148271031 + AluJo SINE Alu 1 212 -100 255 61 0 0 chr11 513442 513475 -148269997 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 671 276 24 68 chr11 513577 513791 -148269681 + L1M4 LINE L1 3106 3309 -2837 2144 139 0 0 chr11 513791 514101 -148269371 + AluSx SINE Alu 1 310 -2 671 276 24 68 chr11 514101 514136 -148269336 + L1M4 LINE L1 3309 3344 -2802 782 156 57 28 chr11 514199 514340 -148269132 + FAM SINE Alu 24 168 -17 941 101 7 0 chr11 514410 514549 -148268923 + AluSg/x SINE Alu 170 309 -1 1964 100 47 0 chr11 514567 514846 -148268626 + AluSg SINE Alu 1 292 -18 1741 128 0 0 chr11 514896 515139 -148268333 + AluSx SINE Alu 1 243 -69 1214 127 0 0 chr11 519038 519211 -148264261 + AluSp SINE Alu 130 302 -11 246 319 104 21 chr11 519522 519666 -148263806 - L1MEc LINE L1 -1892 5049 4894 688 261 55 25 chr11 520128 520475 -148262997 - L1MEc LINE L1 -3597 3344 2984 2226 120 0 3 chr11 520475 520783 -148262689 - AluSx SINE Alu -5 307 1 688 261 55 25 chr11 520783 520799 -148262673 - L1MEc LINE L1 -3957 2984 2970 484 330 35 40 chr11 520818 520856 -148262616 - L1MEc LINE L1 -4313 2809 2772 1817 185 0 0 chr11 520856 521153 -148262319 - AluJb SINE Alu -11 301 5 484 330 35 40 chr11 521153 521314 -148262158 - L1MEc LINE L1 -4350 2772 2611 2004 126 0 32 chr11 521318 521487 -148261985 - AluSg SINE Alu -10 300 144 2200 96 10 3 chr11 521487 521789 -148261683 - AluSq SINE Alu -9 304 1 2004 126 0 32 chr11 521789 521929 -148261543 - AluSg SINE Alu -166 144 1 1102 79 0 0 chr11 521932 522071 -148261401 - AluSq/x SINE Alu -174 139 1 238 305 30 8 chr11 522072 522203 -148261269 - L1MEc LINE L1 -4969 1454 1321 27 49 0 0 chr11 528128 528169 -148255303 + GC_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr11 528288 528331 -148255141 + GC_rich Low_complexity Low_complexity 1 43 0 43 47 0 0 chr11 528415 528479 -148254993 + GC_rich Low_complexity Low_complexity 1 64 0 26 64 0 0 chr11 528545 528592 -148254880 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 528696 528717 -148254755 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 530647 530689 -148252783 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 3 chr11 531849 532151 -148251321 - AluSx SINE Alu -11 301 1 1718 259 44 16 chr11 732718 733424 -148050048 + L1ME1 LINE L1 3181 3906 -2240 725 241 97 17 chr11 733432 733473 -148049999 - MLT2D LTR ERVL 0 414 378 312 27 0 0 chr11 733473 733510 -148049962 + (TG)n Simple_repeat Simple_repeat 1 37 0 725 241 97 17 chr11 733510 733705 -148049767 - MLT2D LTR ERVL -36 378 159 1517 118 41 0 chr11 733710 733931 -148049541 - MER30 DNA MER1_type 0 230 1 1035 167 88 26 chr11 733931 734262 -148049210 + MSTB1 LTR MaLR 8 457 0 683 270 23 0 chr11 734262 734426 -148049046 - MLT2D LTR ERVL -246 168 1 977 245 121 13 chr11 734432 734746 -148048726 + L1ME1 LINE L1 3912 4259 -1887 2978 233 42 50 chr11 734750 736509 -148046963 + L1ME1 LINE L1 4344 6096 -70 2169 112 3 6 chr11 736509 736822 -148046650 + AluSx SINE Alu 1 312 0 2978 233 42 50 chr11 736822 736888 -148046584 + L1ME1 LINE L1 6096 6161 -5 497 302 40 31 chr11 736890 737112 -148046360 + ERVL LTR ERVL 2313 2536 -3228 1196 303 27 13 chr11 737136 737509 -148045963 + ERVL LTR ERVL 2492 2869 -2127 773 371 59 19 chr11 737522 738195 -148045277 + ERVL LTR ERVL 3134 3833 -1821 425 297 148 5 chr11 738751 738953 -148044519 + LTR16A1 LTR ERVL 2 232 -225 259 232 18 0 chr11 738996 739052 -148044420 + LTR16A1 LTR ERVL 399 455 -2 606 290 90 33 chr11 740076 740441 -148043031 + L1MCc LINE L1 24 409 -6014 3008 264 52 47 chr11 740712 741169 -148042303 + L1MCc LINE L1 865 1318 -5623 2201 67 3 3 chr11 741169 741495 -148041977 + AluSc SINE Alu 1 326 0 3008 264 52 47 chr11 741495 741536 -148041936 + L1MCc LINE L1 1318 1357 -5584 1671 176 3 22 chr11 741536 741849 -148041623 + AluJo SINE Alu 1 307 -5 3008 264 52 47 chr11 741849 742371 -148041101 + L1MCc LINE L1 1357 1875 -5066 2032 89 64 0 chr11 742371 742652 -148040820 - AluSq SINE Alu -14 299 1 3008 264 52 47 chr11 742652 743496 -148039976 + L1MCc LINE L1 1875 2937 -4004 916 205 0 6 chr11 743496 743657 -148039815 + FRAM SINE Alu 1 160 -6 3008 264 52 47 chr11 743657 744021 -148039451 + L1MCc LINE L1 2937 3297 -3644 2705 234 66 57 chr11 744005 744205 -148039267 + L1MB7 LINE L1 3910 4107 -2039 * 2361 44 14 14 chr11 744205 744502 -148038970 - AluY SINE Alu -12 299 3 2705 234 66 57 chr11 744502 745458 -148038014 + L1MB7 LINE L1 4107 5076 -1070 424 196 55 8 chr11 745463 745632 -148037840 - MER20 DNA MER1_type 0 219 7 987 212 31 16 chr11 745639 745975 -148037497 + L1MB7 LINE L1 5089 5425 -746 242 274 78 0 chr11 746080 746182 -148037290 + L1MB7 LINE L1 5461 5570 -774 397 240 6 6 chr11 746349 746520 -148036952 + (TG)n Simple_repeat Simple_repeat 2 172 0 2588 36 0 0 chr11 747263 747571 -148035901 + AluY SINE Alu 1 308 -3 303 179 0 45 chr11 747863 747930 -148035542 - L1PA11 LINE L1 -2 6172 6109 334 320 53 53 chr11 748438 748682 -148034790 + L1ME3 LINE L1 5887 6130 -32 250 253 81 20 chr11 750047 750146 -148033326 + MIR SINE MIR 44 148 -114 1144 180 70 22 chr11 751800 752080 -148031392 + MLT1B LTR MaLR 60 370 -4 2740 231 66 71 chr11 753838 753940 -148029532 + MER45B DNA AcHobo 25 126 -1455 834 139 8 0 chr11 753940 754069 -148029403 - FLAM_C SINE Alu -3 130 1 2740 231 66 71 chr11 754069 754904 -148028568 + MER45B DNA AcHobo 126 957 -83 1230 101 62 0 chr11 755209 755388 -148028084 + MER107 DNA MER1_type 8 197 0 592 309 98 21 chr11 755616 755901 -148027571 - LTR16B LTR ERVL -14 450 144 281 338 157 12 chr11 755984 756404 -148027068 + L1MC5 LINE L1 7351 7831 -130 27 49 0 0 chr11 758712 758753 -148024719 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 758847 758868 -148024604 + GC_rich Low_complexity Low_complexity 1 21 0 207 325 0 0 chr11 760180 760263 -148023209 + C-rich Low_complexity Low_complexity 6 88 0 242 241 89 13 chr11 762207 762286 -148021186 - MLT1H1 LTR MaLR -5 550 466 1411 232 135 18 chr11 762891 763327 -148020145 + L1MB7 LINE L1 5689 6175 -9 453 262 152 5 chr11 763433 763624 -148019848 - MER58B DNA MER1_type 0 341 123 3430 209 20 7 chr11 763629 764326 -148019146 - L1MB3 LINE L1 -2 6181 5476 1307 162 5 0 chr11 764328 764550 -148018922 - AluSg/x SINE Alu -5 307 85 483 241 0 19 chr11 764591 764699 -148018773 - MER58B DNA MER1_type -230 111 6 182 163 70 0 chr11 765106 765149 -148018323 + L2 LINE L2 3016 3061 -211 905 202 37 24 chr11 765738 766008 -148017464 - MER33 DNA MER1_type -38 325 2 2064 197 84 12 chr11 766043 766555 -148016917 + MER74A LTR ERVL 8 556 -2 251 301 29 19 chr11 766574 766677 -148016795 - MIR SINE MIR -62 146 43 189 248 99 30 chr11 766872 766973 -148016499 + MIR3 SINE MIR 83 190 -18 2319 277 67 26 chr11 767375 768299 -148015173 + L1MEc LINE L1 22 983 -5413 3105 243 45 52 chr11 768550 768923 -148014549 + L1MEc LINE L1 1031 1405 -4991 1993 125 3 0 chr11 768923 769211 -148014261 - AluSp SINE Alu -3 310 22 3105 243 45 52 chr11 769211 769247 -148014225 + L1MEc LINE L1 1405 1440 -4956 207 100 0 0 chr11 769247 769277 -148014195 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 3105 243 45 52 chr11 769277 769333 -148014139 + L1MEc LINE L1 1440 1495 -4901 2810 155 73 2 chr11 769333 769837 -148013635 + L1MB3 LINE L1 5643 6182 -1 3105 243 45 52 chr11 769837 770742 -148012730 + L1MEc LINE L1 1495 2394 -4002 1101 161 8 42 chr11 770792 771028 -148012444 - MER96B DNA MER1_type? 0 417 190 629 219 29 7 chr11 771029 771166 -148012306 + MLT1F1 LTR MaLR 419 558 -9 6439 249 80 12 chr11 771180 773389 -148010083 + L1MEc LINE L1 2364 4722 -1493 274 107 53 13 chr11 773561 773636 -148009836 + (TA)n Simple_repeat Simple_repeat 2 79 0 817 194 0 48 chr11 773652 773817 -148009655 - AluJo SINE Alu -30 282 126 333 350 38 25 chr11 773828 773988 -148009484 - L1 LINE L1 -1300 4846 4685 239 327 36 42 chr11 774088 774253 -148009219 + L1M4 LINE L1 4531 4694 -1452 287 347 150 16 chr11 774293 774679 -148008793 - HAL1 LINE L1 -843 1664 1227 1476 184 32 0 chr11 774936 775214 -148008258 - AluJo SINE Alu -25 287 1 8298 58 2 5 chr11 775433 776442 -148007030 - LTR13 LTR ERVK 0 1007 2 747 233 142 0 chr11 776546 776786 -148006686 + L1MC4a LINE L1 7035 7308 -500 268 298 26 0 chr11 776986 777100 -148006372 + L1MEc LINE L1 268 384 -6012 504 209 17 0 chr11 777133 777305 -148006167 + GA-rich Low_complexity Low_complexity 2 176 0 399 264 41 8 chr11 777307 777428 -148006044 + L1MEc LINE L1 357 481 -5915 739 341 41 0 chr11 777471 777840 -148005632 + L1MEc LINE L1 559 942 -5454 401 252 49 0 chr11 777872 777995 -148005477 + L1MC4 LINE L1 7914 8042 0 258 288 7 14 chr11 778443 778589 -148004883 + (CA)n Simple_repeat Simple_repeat 1 145 0 2340 68 0 0 chr11 778609 778902 -148004570 - AluY SINE Alu -18 293 1 226 291 58 0 chr11 779043 779129 -148004343 - L2 LINE L2 -609 2705 2615 1629 181 22 16 chr11 779198 779518 -148003954 + L1MB3 LINE L1 5862 6183 0 599 155 10 0 chr11 780473 780576 -148002896 - L1MB7 LINE L1 -11 6173 6070 481 188 52 155 chr11 781630 781843 -148001629 - L1MB7 LINE L1 -75 6103 5913 275 302 32 8 chr11 781865 781991 -148001481 - ERVL LTR ERVL -46 5718 5590 21 0 0 0 chr11 782020 782041 -148001431 + AT_rich Low_complexity Low_complexity 1 21 0 2275 95 20 0 chr11 782108 782414 -148001058 - AluSx SINE Alu 0 312 1 2449 298 70 18 chr11 782414 783416 -148000056 - ERVL LTR ERVL -195 5569 4516 1335 252 32 28 chr11 783631 784064 -147999408 - ERVL LTR ERVL -1535 4229 3795 * 1801 248 71 8 chr11 784048 784540 -147998932 - ERVL LTR ERVL -2176 3588 3066 1702 169 66 3 chr11 784595 784974 -147998498 + L1MC2 LINE L1 5928 6330 -14 2487 263 58 8 chr11 784984 785710 -147997762 - ERVL LTR ERVL -3180 2584 1823 228 67 0 0 chr11 786760 786790 -147996682 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1414 204 33 84 chr11 786798 787191 -147996281 - MLT1A2 LTR MaLR 0 374 2 206 222 99 0 chr11 788868 788949 -147994523 + (CATG)n Simple_repeat Simple_repeat 1 89 0 257 254 0 65 chr11 789140 789325 -147994147 + G-rich Low_complexity Low_complexity 4 176 0 * 488 231 29 0 chr11 789191 789432 -147994040 + (GGGTG)n Simple_repeat Simple_repeat 1 247 0 240 111 0 0 chr11 791172 791208 -147992264 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 423 165 0 0 chr11 795052 795137 -147988335 + (TG)n Simple_repeat Simple_repeat 2 86 0 288 77 0 0 chr11 795610 795649 -147987823 + (GA)n Simple_repeat Simple_repeat 1 39 0 466 209 11 33 chr11 795786 795968 -147987504 + G-rich Low_complexity Low_complexity 1 178 0 * 549 164 0 53 chr11 795950 796139 -147987333 + GA-rich Low_complexity Low_complexity 1 179 0 323 179 0 0 chr11 799703 799759 -147983713 + MIR SINE MIR 90 145 -63 307 128 58 0 chr11 801068 801154 -147982318 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 206 269 64 13 chr11 801970 802048 -147981424 - L2 LINE L2 -210 3062 2981 318 265 128 0 chr11 803001 803103 -147980369 - MER45A DNA AcHobo 0 178 64 902 114 0 50 chr11 803103 803243 -147980229 + FLAM_C SINE Alu 1 133 0 211 273 0 0 chr11 804222 804277 -147979195 + C-rich Low_complexity Low_complexity 5 59 0 833 270 34 0 chr11 806851 807114 -147976358 - MLT1E2 LTR MaLR 0 626 355 2067 157 23 0 chr11 807166 807509 -147975963 - L1MB3 LINE L1 -7 6176 5826 1732 142 4 25 chr11 807837 808118 -147975354 + AluJo SINE Alu 22 296 -16 2065 111 0 20 chr11 808120 808449 -147975023 + AluSq SINE Alu 1 313 0 1159 128 0 0 chr11 808449 808613 -147974859 + AluSg/x SINE Alu 134 297 -15 315 0 0 0 chr11 808617 808632 -147974840 + (TG)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chr11 808632 808667 -147974805 + (TG)n Simple_repeat Simple_repeat 2 36 0 201 40 0 100 chr11 808690 808740 -147974732 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 767 100 0 27 chr11 810783 810893 -147972579 + U6 snRNA snRNA 1 107 0 7763 116 10 9 chr11 810893 813060 -147970412 + L1PA11 LINE L1 3979 6153 -21 2596 165 66 23 chr11 813066 813506 -147969966 - Tigger3b DNA MER2_type -2440 588 117 2944 88 0 3 chr11 813506 813882 -147969590 + THE1C LTR MaLR 1 375 0 2596 165 66 23 chr11 813882 814005 -147969467 - Tigger3b DNA MER2_type -2911 117 1 7050 180 66 19 chr11 814005 815100 -147968372 + ERVL LTR ERVL 2185 3371 -2393 2157 132 50 19 chr11 815100 815464 -147968008 - THE1C LTR MaLR 0 375 1 7050 180 66 19 chr11 815464 815865 -147967607 + ERVL LTR ERVL 3371 3752 -2012 3851 246 77 44 chr11 815865 816686 -147966786 - THE1C-int LTR MaLR -205 1446 554 1579 57 0 0 chr11 816686 816880 -147966592 - L1PA4 LINE L1 0 6155 5962 3851 246 77 44 chr11 816880 817454 -147966018 - THE1C-int LTR MaLR -1097 554 1 1294 200 134 45 chr11 817454 817789 -147965683 - MLT1A1 LTR MaLR 0 365 1 240 234 16 31 chr11 818281 818345 -147965127 + MLT1I LTR MaLR 347 409 0 470 208 42 76 chr11 818734 818878 -147964594 + MLT1J2 LTR MaLR 20 158 -292 665 224 61 0 chr11 819024 819171 -147964301 + MER5A DNA MER1_type 8 163 -26 289 136 0 0 chr11 819182 819226 -147964246 + AluSx SINE Alu 1 44 -256 246 217 0 0 chr11 819234 819280 -147964192 - MSTD LTR MaLR -127 269 224 1812 137 0 0 chr11 819284 819546 -147963926 + AluSx SINE Alu 41 302 -10 224 311 0 0 chr11 819564 819638 -147963834 - L2 LINE L2 -2241 1073 1000 993 229 121 36 chr11 820030 820310 -147963162 - MLT2B1 LTR ERVL -1 519 205 2092 161 83 14 chr11 820310 820731 -147962741 - LTR7 LTR ERV1 0 450 1 993 229 121 36 chr11 820731 820782 -147962690 - MLT2B1 LTR ERVL -315 205 160 387 41 0 0 chr11 820803 820852 -147962620 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 6346 62 16 73 chr11 820852 822560 -147960912 + SVA Other Other 57 1386 0 2074 112 3 0 chr11 823354 823663 -147959809 - AluSg SINE Alu 0 310 1 924 292 111 37 chr11 823664 824096 -147959376 - L1M4 LINE L1 -1275 4871 4408 511 73 0 12 chr11 824109 824191 -147959281 + LTR10E LTR ERV1 4 84 -549 2310 107 153 20 chr11 824852 825310 -147958162 + LTR10E LTR ERV1 72 590 -43 999 234 55 64 chr11 825328 825861 -147957611 + HERVI LTR ERV1 3 314 -6335 1219 165 93 8 chr11 826079 826519 -147956953 + HERVI LTR ERV1 840 2694 -3955 723 260 0 6 chr11 826510 826691 -147956781 + HERVI LTR ERV1 3138 3317 -4468 * 3378 172 46 54 chr11 826672 827581 -147955891 + HERVI LTR ERV1 953 4388 -3397 4141 51 7 28 chr11 827581 827838 -147955634 + LTR10C LTR ERV1 1 262 -329 1368 199 102 60 chr11 827838 828270 -147955202 - LTR7 LTR ERV1 0 450 1 4141 51 7 28 chr11 828270 828388 -147955084 + LTR10C LTR ERV1 262 381 -210 3514 57 2 13 chr11 828388 828841 -147954631 + LTR7 LTR ERV1 1 448 -2 4141 51 7 28 chr11 828841 829068 -147954404 + LTR10C LTR ERV1 381 591 0 981 35 0 7 chr11 829069 829212 -147954260 + Harlequin LTR ERV1 1587 1728 -5168 277 244 39 13 chr11 829212 829290 -147954182 - LTR8 LTR ERV1 -456 235 156 4449 128 33 27 chr11 829294 830114 -147953358 + Harlequin LTR ERV1 2160 2984 -3912 2816 247 9 9 chr11 830176 830935 -147952537 + Harlequin LTR ERV1 3345 5911 -738 2823 94 163 16 chr11 831091 831643 -147951829 + LTR10E LTR ERV1 1 633 0 593 185 86 0 chr11 831644 831795 -147951677 - MLT2B2 LTR ERVL -351 164 1 1275 181 39 11 chr11 832143 832425 -147951047 - MLT1B LTR MaLR -3 387 98 1123 158 0 0 chr11 832427 832592 -147950880 - FRAM SINE Alu 0 166 2 854 106 194 12 chr11 832593 832763 -147950709 - MSTA LTR MaLR 0 428 228 953 152 25 15 chr11 832764 832959 -147950513 + THE1C LTR MaLR 178 375 0 1671 285 93 17 chr11 833016 833137 -147950335 + HERVL LTR ERVL 1585 1695 -3301 2297 156 34 3 chr11 833137 833515 -147949957 + MLT1B LTR MaLR 1 390 0 1671 285 93 17 chr11 833515 834115 -147949357 + HERVL LTR ERVL 1695 2357 -2639 1026 213 17 0 chr11 834154 834382 -147949090 + MLT2B1 LTR ERVL 1 232 -288 2138 141 39 0 chr11 834382 834766 -147948706 - MSTB1 LTR MaLR 0 432 34 618 217 22 7 chr11 834815 834953 -147948519 + MLT2B1 LTR ERVL 331 470 -50 459 383 27 6 chr11 835158 835495 -147947977 + HERVL LTR ERVL 3926 4269 -1385 275 367 44 39 chr11 835904 836473 -147946999 + HERVL LTR ERVL 4741 5312 -342 2453 161 14 45 chr11 836528 837043 -147946429 - MLT2B3 LTR ERVL -1 553 55 548 92 0 0 chr11 837044 837128 -147946344 + MLT2B3 LTR ERVL 1 84 -470 1314 130 80 58 chr11 837128 837504 -147945968 + MSTA LTR MaLR 1 401 -27 1635 168 47 0 chr11 837504 837857 -147945615 - AluSx SINE Alu 0 367 1 10023 169 10 9 chr11 837898 839547 -147943925 + MSTB-int LTR MaLR 1 1651 0 2170 153 112 5 chr11 839547 839932 -147943540 + MSTB LTR MaLR 1 426 0 326 137 0 0 chr11 839932 839983 -147943489 + MLT2B3 LTR ERVL 80 130 -424 986 211 133 58 chr11 839983 840381 -147943091 - MSTC LTR MaLR 0 428 1 5513 236 63 44 chr11 840381 841867 -147941605 - MSTC-int LTR MaLR 0 1735 212 2417 57 0 0 chr11 841867 842163 -147941309 - AluY SINE Alu -15 296 1 5513 236 63 44 chr11 842163 842360 -147941112 - MSTC-int LTR MaLR -1523 212 20 482 249 29 23 chr11 842379 842552 -147940920 - MLT1A1 LTR MaLR 0 365 192 584 204 8 54 chr11 842593 842754 -147940718 - MLT1A1 LTR MaLR -183 182 30 1894 114 48 14 chr11 842754 843044 -147940428 + AluSx SINE Alu 1 300 -12 584 204 8 54 chr11 843044 843073 -147940399 - MLT1A1 LTR MaLR -335 30 1 * 1583 186 32 74 chr11 843073 843476 -147939996 + MLT2B3 LTR ERVL 130 515 -39 2308 86 0 3 chr11 843503 843805 -147939667 - AluSc SINE Alu -8 301 1 225 163 0 0 chr11 843811 843854 -147939618 + MLT2B3 LTR ERVL 471 513 -7 23866 202 44 31 chr11 843859 845152 -147938320 + ERVL-B3-B3 LTR ERVL 3 1278 -4486 3638 133 9 6 chr11 845152 845677 -147937795 + MER1A DNA MER1_type 1 527 0 23866 202 44 31 chr11 845677 847632 -147935840 + ERVL-B3-B3 LTR ERVL 1278 3207 -2557 2061 111 3 0 chr11 847632 847921 -147935551 + AluSx SINE Alu 23 312 0 23866 202 44 31 chr11 847921 849777 -147933695 + ERVL-B3-B3 LTR ERVL 3207 5189 -575 2478 58 0 3 chr11 849777 850088 -147933384 + AluY SINE Alu 1 310 -1 23866 202 44 31 chr11 850088 850665 -147932807 + ERVL-B3-B3 LTR ERVL 5189 5757 -7 2340 160 59 30 chr11 850665 851159 -147932313 + MLT2B3 LTR ERVL 1 508 -46 447 52 0 0 chr11 851161 851219 -147932253 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 1014 126 0 0 chr11 851222 851338 -147932134 + (TCTG)n Simple_repeat Simple_repeat 1 283 0 1014 126 0 0 chr11 851338 851505 -147931967 + (TCTG)n Simple_repeat Simple_repeat 2 168 0 534 295 68 31 chr11 851662 851987 -147931485 + LTR16A LTR ERVL 87 423 -27 1304 221 67 38 chr11 852360 852780 -147930692 - MLT1C LTR MaLR 0 467 36 609 209 54 106 chr11 853392 853534 -147929938 - MER39 LTR ERV1 -6 682 534 2002 110 4 4 chr11 853534 853815 -147929657 + AluSx SINE Alu 30 310 -2 609 209 54 106 chr11 853815 853917 -147929555 - MER39 LTR ERV1 -154 534 450 2552 124 72 10 chr11 853917 854320 -147929152 - MSTA LTR MaLR 0 428 1 609 209 54 106 chr11 854320 854358 -147929114 - MER39 LTR ERV1 -238 450 412 764 262 161 0 chr11 854363 854611 -147928861 - MSTD LTR MaLR -1 395 108 330 270 78 26 chr11 855179 855294 -147928178 - L2 LINE L2 -2 3311 3191 246 308 132 0 chr11 858425 858607 -147924865 + L2 LINE L2 2556 2761 -553 245 279 0 0 chr11 859064 859125 -147924347 + MER89 LTR ERV1 2 62 -497 342 271 92 28 chr11 859133 859351 -147924121 + MER89 LTR ERV1 182 413 -146 2250 87 0 3 chr11 859378 859678 -147923794 - AluY SINE Alu -12 299 1 5689 203 27 33 chr11 859693 860157 -147923315 - L1MB7 LINE L1 -11 6173 5708 1988 130 0 3 chr11 860157 860470 -147923002 + AluSx SINE Alu 1 312 0 5689 203 27 33 chr11 860470 860536 -147922936 - L1MB7 LINE L1 -476 5708 5643 414 0 0 0 chr11 860536 860582 -147922890 + (CA)n Simple_repeat Simple_repeat 2 47 0 5689 203 27 33 chr11 860582 861196 -147922276 - L1MB7 LINE L1 -541 5643 5027 2353 103 0 0 chr11 861196 861508 -147921964 - AluSx SINE Alu 0 312 1 5689 203 27 33 chr11 861508 861707 -147921765 - L1MB7 LINE L1 -1157 5027 4828 872 80 0 0 chr11 861707 861819 -147921653 + HY1 scRNA scRNA 1 112 0 5689 203 27 33 chr11 861819 862452 -147921020 - L1MB7 LINE L1 -1356 4828 4211 1936 178 36 22 chr11 862452 862812 -147920660 - MLT1A1 LTR MaLR 0 365 1 5689 203 27 33 chr11 862812 863192 -147920280 - L1MB7 LINE L1 -1973 4211 3830 576 219 41 0 chr11 863215 863361 -147920111 + MER89 LTR ERV1 407 558 -1 417 280 57 96 chr11 864371 864703 -147918769 + L2 LINE L2 2953 3271 -1 662 286 130 0 chr11 865170 865355 -147918117 - MER3 DNA MER1_type 0 209 1 198 152 136 91 chr11 865954 866020 -147917452 + L2 LINE L2 3027 3095 -177 204 183 50 0 chr11 866278 866338 -147917134 + G-rich Low_complexity Low_complexity 2 64 0 22 70 0 0 chr11 866445 866488 -147916984 + GC_rich Low_complexity Low_complexity 1 43 0 233 174 26 70 chr11 866508 866623 -147916849 + (CCCG)n Simple_repeat Simple_repeat 3 112 0 283 261 7 25 chr11 868277 868556 -147914916 + G-rich Low_complexity Low_complexity 1 273 0 243 213 0 0 chr11 869463 869538 -147913934 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 333 14 0 chr11 869790 869859 -147913613 + MIR SINE MIR 84 153 -109 295 168 15 128 chr11 873421 873617 -147909855 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 509 213 19 0 chr11 874265 874373 -147909099 - L1MA10 LINE L1 -2 6332 6223 1266 269 43 38 chr11 874777 875377 -147908095 - L1ME2 LINE L1 -311 5853 5254 350 232 6 39 chr11 926336 926674 -147856798 + G-rich Low_complexity Low_complexity 1 326 0 206 337 6 33 chr11 926683 926864 -147856608 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 * 370 333 0 32 chr11 926738 926924 -147856548 + G-rich Low_complexity Low_complexity 1 180 0 1973 123 10 3 chr11 927352 927644 -147855828 - AluSq SINE Alu -19 294 1 298 239 77 58 chr11 927688 927843 -147855629 - L1MC5 LINE L1 -927 7034 6877 387 0 0 0 chr11 928032 928075 -147855397 + (CA)n Simple_repeat Simple_repeat 2 44 0 529 343 26 22 chr11 929094 929362 -147854110 - L1MC4 LINE L1 -16 8026 7758 2640 102 5 30 chr11 929475 929848 -147853624 + THE1B LTR MaLR 1 364 0 4562 125 38 2 chr11 929848 930649 -147852823 + THE1B-int LTR MaLR 1 829 -751 2846 283 28 45 chr11 931164 931760 -147851712 - L1MC4a LINE L1 -288 7520 6948 2111 119 10 3 chr11 931760 932071 -147851401 - AluSq SINE Alu 0 313 1 2846 283 28 45 chr11 932071 932536 -147850936 - L1MC4a LINE L1 -860 6948 6477 280 264 27 0 chr11 934039 934128 -147849344 + MIR3 SINE MIR 63 157 -51 243 246 35 0 chr11 934765 934822 -147848650 + MIR SINE MIR 64 122 -86 689 148 9 0 chr11 935068 935176 -147848296 + FRAM SINE Alu 62 170 -6 34 65 0 0 chr11 935948 936010 -147847462 + AT_rich Low_complexity Low_complexity 1 62 0 186 43 0 0 chr11 936708 936731 -147846741 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 401 353 107 43 chr11 937723 938191 -147845281 - HAL1 LINE L1 -1206 1301 880 245 346 0 32 chr11 938386 938571 -147844901 + GA-rich Low_complexity Low_complexity 1 179 0 379 335 12 12 chr11 939799 939969 -147843503 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 225 65 0 0 chr11 941183 941214 -147842258 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 856 298 79 74 chr11 942774 943002 -147840470 - L1MC5 LINE L1 -397 7564 7339 231 61 0 0 chr11 943002 943035 -147840437 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 856 298 79 74 chr11 943035 943797 -147839675 - L1MC5 LINE L1 -622 7339 6555 1412 241 33 9 chr11 943874 944301 -147839171 - L1PA16 LINE L1 -5 6161 5725 227 213 0 29 chr11 948215 948351 -147835121 + G-rich Low_complexity Low_complexity 1 132 0 222 227 0 0 chr11 949316 949391 -147834081 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 333 14 0 chr11 949643 949712 -147833760 + MIR SINE MIR 84 153 -109 264 252 9 28 chr11 955526 955633 -147827839 + (CACCC)n Simple_repeat Simple_repeat 2 106 0 567 139 0 0 chr11 956828 956929 -147826543 + (TG)n Simple_repeat Simple_repeat 2 102 0 222 211 35 0 chr11 957381 957622 -147825850 + (GGGTG)n Simple_repeat Simple_repeat 1 249 0 240 111 0 0 chr11 959357 959393 -147824079 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 208 135 0 27 chr11 961121 961158 -147822314 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 318 250 0 40 chr11 962133 962209 -147821263 + L1M4 LINE L1 4581 4653 -1493 274 107 53 13 chr11 962381 962456 -147821016 + (TA)n Simple_repeat Simple_repeat 2 79 0 824 194 0 48 chr11 962472 962637 -147820835 - AluJo SINE Alu -30 282 126 364 350 38 25 chr11 962648 962808 -147820664 - L1 LINE L1 -1300 4846 4685 353 365 65 34 chr11 962810 963073 -147820399 + L1M4 LINE L1 4424 4694 -1452 * 680 364 114 15 chr11 963066 963660 -147819812 - L1MEd LINE L1 -843 1647 954 1518 184 32 0 chr11 963756 964034 -147819438 - AluJo SINE Alu -25 287 1 8315 58 2 5 chr11 964252 965261 -147818211 - LTR13 LTR ERVK 0 1007 2 677 233 142 0 chr11 965365 965605 -147817867 + L1MC4a LINE L1 7035 7308 -500 250 253 24 0 chr11 965805 965888 -147817584 + L1MEc LINE L1 268 352 -6044 526 213 13 0 chr11 965895 966125 -147817347 + GA-rich Low_complexity Low_complexity 1 233 0 863 322 80 14 chr11 966127 966677 -147816795 + L1MEc LINE L1 357 942 -5454 419 236 49 0 chr11 966709 966832 -147816640 + L1MC4 LINE L1 7914 8042 0 294 293 6 12 chr11 967280 967444 -147816028 + (CA)n Simple_repeat Simple_repeat 1 163 0 2398 61 0 0 chr11 967464 967757 -147815715 - AluY SINE Alu -18 293 1 238 291 58 0 chr11 967898 967984 -147815488 - L2 LINE L2 -609 2705 2615 1647 181 22 16 chr11 968053 968373 -147815099 + L1MB3 LINE L1 5862 6183 0 569 165 10 0 chr11 969328 969431 -147814041 - L1MB7 LINE L1 -11 6173 6070 445 244 71 0 chr11 971049 971176 -147812296 - L1MB7 LINE L1 -136 6048 5913 250 302 32 8 chr11 971198 971324 -147812148 - ERVL LTR ERVL -46 5718 5590 2204 98 20 0 chr11 971441 971736 -147811736 - AluSx SINE Alu -11 301 1 2190 298 70 18 chr11 971736 972735 -147810737 - ERVL LTR ERVL -195 5569 4519 1325 254 32 28 chr11 972953 973386 -147810086 - ERVL LTR ERVL -1535 4229 3795 * 1801 248 71 8 chr11 973370 973862 -147809610 - ERVL LTR ERVL -2176 3588 3066 1937 165 80 3 chr11 973917 974304 -147809168 + L1MC2 LINE L1 5928 6344 0 2487 263 58 8 chr11 974306 975032 -147808440 - ERVL LTR ERVL -3180 2584 1823 228 67 0 0 chr11 976079 976109 -147807363 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1405 204 33 84 chr11 976117 976509 -147806963 - MLT1A2 LTR MaLR 0 374 3 236 200 36 18 chr11 979088 979143 -147804329 + MIR SINE MIR 90 145 -63 307 128 58 0 chr11 980449 980535 -147802937 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 206 269 64 13 chr11 981348 981426 -147802046 - L2 LINE L2 -210 3062 2981 318 265 128 0 chr11 982381 982483 -147800989 - MER45A DNA AcHobo 0 178 64 902 114 0 50 chr11 982483 982623 -147800849 + FLAM_C SINE Alu 1 133 0 525 218 18 0 chr11 983567 983677 -147799795 - MLT1E2 LTR MaLR -160 466 355 2067 157 23 0 chr11 983729 984072 -147799400 - L1MB3 LINE L1 -7 6176 5826 1803 142 4 25 chr11 984400 984681 -147798791 + AluJo SINE Alu 22 296 -16 2060 108 0 25 chr11 984695 984969 -147798503 + AluSq SINE Alu 14 282 -31 207 31 0 31 chr11 984969 985001 -147798471 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 2060 108 0 25 chr11 985001 985012 -147798460 + AluSq SINE Alu 282 292 -21 1232 117 0 0 chr11 985012 985174 -147798298 + AluSg/x SINE Alu 134 295 -17 351 0 0 0 chr11 985178 985191 -147798281 + (TG)n Simple_repeat Simple_repeat 1 52 0 351 0 0 0 chr11 985191 985230 -147798242 + (TG)n Simple_repeat Simple_repeat 2 40 0 201 40 0 100 chr11 985253 985303 -147798169 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 381 22 0 0 chr11 985425 985471 -147798001 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 876 129 0 0 chr11 985473 985601 -147797871 + (TCTG)n Simple_repeat Simple_repeat 1 275 0 876 129 0 0 chr11 985601 985748 -147797724 + (TCTG)n Simple_repeat Simple_repeat 2 148 0 584 295 68 31 chr11 985905 986230 -147797242 + LTR16A LTR ERVL 87 423 -27 1368 221 67 38 chr11 986603 987023 -147796449 - MLT1C LTR MaLR 0 467 36 664 202 70 105 chr11 987633 987775 -147795697 - MER39 LTR ERV1 -6 682 537 2109 109 3 3 chr11 987775 988058 -147795414 + AluSx SINE Alu 30 312 0 664 202 70 105 chr11 988058 988160 -147795312 - MER39 LTR ERV1 -151 537 454 2122 136 66 24 chr11 988160 988571 -147794901 - MSTA LTR MaLR 0 428 1 664 202 70 105 chr11 988571 988613 -147794859 - MER39 LTR ERV1 -234 454 412 810 210 194 32 chr11 988614 988862 -147794610 - MSTD LTR MaLR -1 395 108 295 278 78 26 chr11 989430 989545 -147793927 - L2 LINE L2 -2 3311 3191 768 126 92 14 chr11 990334 990492 -147792980 - LTR7 LTR ERV1 -232 218 1 2699 35 12 23 chr11 990493 990610 -147792862 + LTR10C LTR ERV1 251 368 -223 3279 57 2 13 chr11 990610 991063 -147792409 + LTR7 LTR ERV1 1 448 -2 2699 35 12 23 chr11 991063 991290 -147792182 + LTR10C LTR ERV1 368 591 0 1010 23 0 8 chr11 991291 991424 -147792048 + Harlequin LTR ERV1 1587 1718 -5178 301 261 159 0 chr11 991424 991512 -147791960 - LTR8 LTR ERV1 -434 257 156 4732 127 33 27 chr11 991516 992336 -147791136 + Harlequin LTR ERV1 2160 2984 -3912 2885 254 9 9 chr11 992398 993157 -147790315 + Harlequin LTR ERV1 3345 5911 -738 255 208 14 14 chr11 993241 993313 -147790159 + Harlequin LTR ERV1 6578 6649 0 3000 100 163 16 chr11 993313 993865 -147789607 + LTR10E LTR ERV1 1 633 0 627 185 86 0 chr11 993866 994017 -147789455 - MLT2B2 LTR ERVL -351 164 1 1327 170 46 18 chr11 994364 994646 -147788826 - MLT1B LTR MaLR -3 387 98 1054 158 0 0 chr11 994648 994813 -147788659 - FRAM SINE Alu 0 166 2 922 106 194 12 chr11 994814 994984 -147788488 - MSTA LTR MaLR 0 428 228 1013 133 46 87 chr11 994985 995180 -147788292 + THE1C LTR MaLR 178 375 0 1871 293 87 15 chr11 995237 995358 -147788114 + HERV16 LTR ERVL 1585 1696 -3300 2081 159 34 3 chr11 995358 995736 -147787736 + MLT1B LTR MaLR 1 390 0 1871 293 87 15 chr11 995736 996335 -147787137 + HERV16 LTR ERVL 1696 2357 -2639 1091 213 17 0 chr11 996374 996602 -147786870 + MLT2B1 LTR ERVL 1 232 -288 1232 119 5 5 chr11 996602 996787 -147786685 - MSTB1 LTR MaLR 0 432 248 704 109 0 27 chr11 998984 999094 -147784378 + U6 snRNA snRNA 1 107 0 8323 116 10 9 chr11 999094 1001261 -147782211 + L1PA11 LINE L1 3979 6153 -21 2920 150 75 25 chr11 1001267 1001703 -147781769 - Tigger3b DNA MER2_type -2440 588 116 2750 99 0 0 chr11 1001703 1002078 -147781394 + THE1C LTR MaLR 1 375 0 2920 150 75 25 chr11 1002078 1002201 -147781271 - Tigger3b DNA MER2_type -2912 116 1 7226 180 69 20 chr11 1002201 1003296 -147780176 + HERV16 LTR ERVL 2185 3372 -2392 1966 135 50 19 chr11 1003296 1003660 -147779812 - THE1C LTR MaLR 0 375 1 7226 180 69 20 chr11 1003660 1004033 -147779439 + HERV16 LTR ERVL 3372 3725 -2039 247 279 0 0 chr11 1004635 1004696 -147778776 + MER89 LTR ERV1 2 62 -497 353 271 92 28 chr11 1004704 1004922 -147778550 + MER89 LTR ERV1 182 413 -146 2383 83 0 3 chr11 1004949 1005249 -147778223 - AluY SINE Alu -12 299 1 5990 201 28 33 chr11 1005268 1005728 -147777744 - L1MB7 LINE L1 -15 6169 5708 2108 126 0 3 chr11 1005728 1006041 -147777431 + AluSx SINE Alu 1 312 0 5990 201 28 33 chr11 1006041 1006107 -147777365 - L1MB7 LINE L1 -476 5708 5643 342 0 0 0 chr11 1006107 1006145 -147777327 + (CA)n Simple_repeat Simple_repeat 2 39 0 5990 201 28 33 chr11 1006145 1006759 -147776713 - L1MB7 LINE L1 -541 5643 5027 2436 106 0 0 chr11 1006759 1007071 -147776401 - AluSx SINE Alu 0 312 1 5990 201 28 33 chr11 1007071 1007270 -147776202 - L1MB7 LINE L1 -1157 5027 4828 812 80 0 0 chr11 1007270 1007382 -147776090 + HY1 scRNA scRNA 1 112 0 5990 201 28 33 chr11 1007382 1008015 -147775457 - L1MB7 LINE L1 -1356 4828 4211 1751 178 36 22 chr11 1008015 1008375 -147775097 - MLT1A1 LTR MaLR 0 365 1 5990 201 28 33 chr11 1008375 1008755 -147774717 - L1MB7 LINE L1 -1973 4211 3830 606 219 41 0 chr11 1008778 1008924 -147774548 + MER89 LTR ERV1 407 558 -1 343 280 64 0 chr11 1010140 1010265 -147773207 + L2 LINE L2 3180 3312 -1 539 286 130 0 chr11 1010731 1010916 -147772556 - MER3 DNA MER1_type 0 209 1 259 143 24 0 chr11 1011835 1011877 -147771595 + LTR7 LTR ERV1 408 450 0 1863 71 0 4 chr11 1011877 1012132 -147771340 - LTR10C LTR ERV1 -337 254 1 3610 167 47 59 chr11 1012132 1013044 -147770428 - LTR10E-int LTR ERV1 -3397 4388 953 1327 197 115 18 chr11 1013025 1013637 -147769835 - LTR10E-int LTR ERV1 -4468 3317 840 * 259 174 22 0 chr11 1013691 1013737 -147769735 - LTR10E-int LTR ERV1 -5628 1021 975 1068 227 56 65 chr11 1013848 1014385 -147769087 - LTR10E-int LTR ERV1 -6335 314 3 2145 111 28 20 chr11 1014403 1014861 -147768611 - LTR10E LTR ERV1 -43 590 72 543 73 0 12 chr11 1015523 1015605 -147767867 - LTR10E LTR ERV1 -549 84 4 244 285 118 44 chr11 1015618 1016050 -147767422 + L1M4 LINE L1 4408 4871 -1275 2178 112 3 0 chr11 1016051 1016360 -147767112 + AluSg SINE Alu 1 310 0 6566 56 17 98 chr11 1017151 1018897 -147764575 - SVA Other Other -683 1386 57 387 41 0 0 chr11 1018897 1018946 -147764526 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 1096 223 121 36 chr11 1018967 1019018 -147764454 + MLT2B1 LTR ERVL 160 205 -315 1880 152 95 24 chr11 1019018 1019438 -147764034 + LTR7 LTR ERV1 1 450 0 1096 223 121 36 chr11 1019438 1019718 -147763754 + MLT2B1 LTR ERVL 205 519 -1 198 311 0 0 chr11 1020110 1020184 -147763288 + L2 LINE L2 1000 1073 -2241 1894 137 0 0 chr11 1020202 1020464 -147763008 - AluSx SINE Alu -10 302 41 265 217 0 0 chr11 1020468 1020514 -147762958 + MSTD LTR MaLR 224 269 -127 332 114 0 0 chr11 1020522 1020566 -147762906 - AluSx SINE Alu -259 44 1 634 224 61 0 chr11 1020577 1020724 -147762748 - MER5A DNA MER1_type -26 163 8 454 222 42 76 chr11 1020870 1021014 -147762458 - MLT1J2 LTR MaLR -292 158 20 251 234 16 31 chr11 1021403 1021467 -147762005 - MLT1I LTR MaLR 0 409 347 1021 207 138 45 chr11 1021959 1022293 -147761179 + MLT1A1 LTR MaLR 1 365 0 4127 244 62 37 chr11 1022293 1022867 -147760605 + MLT1A1-int LTR MaLR 1 559 -1176 1502 57 0 0 chr11 1022867 1023061 -147760411 + L1PA3 LINE L1 5962 6155 0 4127 244 62 37 chr11 1023061 1023685 -147759787 + MLT1A1-int LTR MaLR 559 1229 -506 524 236 0 0 chr11 1023840 1023946 -147759526 + MLT2B1 LTR ERVL 365 470 -50 465 371 36 15 chr11 1024151 1024488 -147758984 + HERVL LTR ERVL 3926 4269 -1385 2613 165 14 45 chr11 1025521 1026036 -147757436 - MLT2B3 LTR ERVL -1 553 55 612 81 0 0 chr11 1026037 1026121 -147757351 + MLT2B3 LTR ERVL 1 84 -470 1418 130 80 58 chr11 1026121 1026497 -147756975 + MSTA LTR MaLR 1 401 -27 1704 168 47 0 chr11 1026497 1026880 -147756592 - AluSx SINE Alu 0 397 1 235 175 0 0 chr11 1026881 1026921 -147756551 + MSTA LTR MaLR 389 428 0 9404 169 11 9 chr11 1026921 1028563 -147754909 + MSTB-int LTR MaLR 1 1645 -6 1990 153 112 5 chr11 1028568 1028953 -147754519 + MSTB LTR MaLR 1 426 0 344 137 0 0 chr11 1028953 1029004 -147754468 + MLT2B3 LTR ERVL 80 130 -424 791 209 133 58 chr11 1029004 1029402 -147754070 - MSTC LTR MaLR 0 428 1 6025 231 65 45 chr11 1029402 1030887 -147752585 - MSTC-int LTR MaLR 0 1735 212 2534 57 0 0 chr11 1030887 1031183 -147752289 - AluY SINE Alu -15 296 1 6025 231 65 45 chr11 1031183 1031380 -147752092 - MSTC-int LTR MaLR -1523 212 20 532 250 57 21 chr11 1031399 1031591 -147751881 - MLT1A1 LTR MaLR 0 365 167 644 197 7 82 chr11 1031594 1031774 -147751698 - MLT1A1 LTR MaLR -171 194 31 2002 113 48 14 chr11 1031774 1032065 -147751407 + AluSx SINE Alu 1 301 -11 644 197 7 82 chr11 1032065 1032094 -147751378 - MLT1A1 LTR MaLR -334 31 1 * 1720 186 32 74 chr11 1032094 1032497 -147750975 + MLT2B3 LTR ERVL 130 515 -39 2475 84 0 3 chr11 1032524 1032833 -147750639 - AluSc SINE Alu -1 308 1 18483 197 41 34 chr11 1032887 1034199 -147749273 + ERVL LTR ERVL 3 1304 -4460 3413 131 9 6 chr11 1034199 1034724 -147748748 + MER1A DNA MER1_type 1 527 0 18483 197 41 34 chr11 1034724 1036681 -147746791 + ERVL LTR ERVL 1304 3245 -2519 2061 111 3 0 chr11 1036681 1036970 -147746502 + AluSx SINE Alu 23 312 0 18483 197 41 34 chr11 1036970 1038813 -147744659 + ERVL LTR ERVL 3245 5181 -583 2470 58 0 3 chr11 1038813 1039121 -147744351 + AluY SINE Alu 1 307 -4 18483 197 41 34 chr11 1039121 1039703 -147743769 + ERVL LTR ERVL 5181 5757 -7 1065 128 20 10 chr11 1039703 1039898 -147743574 + MLT2B3 LTR ERVL 1 197 -357 269 217 0 26 chr11 1039998 1040113 -147743359 + G-rich Low_complexity Low_complexity 1 112 0 509 213 19 0 chr11 1043816 1043924 -147739548 - L1MA10 LINE L1 -2 6332 6223 1266 269 43 38 chr11 1044328 1044928 -147738544 - L1ME2 LINE L1 -311 5853 5254 303 316 26 8 chr11 1045814 1045931 -147737541 - MIR SINE MIR -98 164 46 1092 132 0 0 chr11 1046676 1046835 -147736637 - FRAM SINE Alu -17 159 1 181 264 38 0 chr11 1047934 1047987 -147735485 - L2 LINE L2 -29 3243 3189 537 256 62 17 chr11 1048609 1048785 -147734687 + MER53 DNA DNA 6 189 0 210 125 16 31 chr11 1049691 1049755 -147733717 + GA-rich Low_complexity Low_complexity 3 65 0 3844 147 165 23 chr11 1056164 1056778 -147726694 - MER4D LTR ERV1 0 903 151 1666 140 57 18 chr11 1056778 1057057 -147726415 - AluSq SINE Alu -18 295 6 3844 147 165 23 chr11 1057057 1057231 -147726241 - MER4D LTR ERV1 -752 151 3 277 250 75 67 chr11 1059908 1060028 -147723444 + MIR SINE MIR 23 143 -65 234 237 17 0 chr11 1066657 1066716 -147716756 - MER81 DNA DNA -2 112 53 180 219 49 0 chr11 1068923 1068964 -147714508 - L2 LINE L2 -2 3311 3269 205 241 24 48 chr11 1070420 1070503 -147712969 - MIR SINE MIR -86 122 42 957 177 6 0 chr11 1070522 1070686 -147712786 - AluJb SINE Alu -8 304 140 25 31 0 0 chr11 1073299 1073331 -147710141 + GC_rich Low_complexity Low_complexity 1 32 0 922 253 139 21 chr11 1075464 1075796 -147707676 + L1MB7 LINE L1 5748 6118 -66 2238 87 0 13 chr11 1075800 1076109 -147707363 + AluY SINE Alu 7 311 0 2003 114 0 48 chr11 1077950 1078265 -147705207 + AluSx SINE Alu 1 300 -12 182 228 101 51 chr11 1079962 1080041 -147703431 - MIR SINE MIR -74 134 52 213 281 56 0 chr11 1081182 1081271 -147702201 + MIR3 SINE MIR 62 155 -53 799 216 104 78 chr11 1083034 1083418 -147700054 + MLT1C LTR MaLR 35 428 -39 657 271 140 17 chr11 1083790 1084148 -147699324 - MLT1C LTR MaLR -7 460 59 294 303 67 0 chr11 1085265 1085384 -147698088 + MIR SINE MIR 23 149 -59 209 307 183 7 chr11 1086688 1086841 -147696631 + MIR SINE MIR 13 192 -70 537 230 0 0 chr11 1087063 1087215 -147696257 + (TGG)n Simple_repeat Simple_repeat 2 153 0 278 244 0 26 chr11 1087251 1087366 -147696106 + (ATGGTG)n Simple_repeat Simple_repeat 2 113 0 605 216 0 6 chr11 1087383 1087564 -147695908 + (TGG)n Simple_repeat Simple_repeat 1 180 0 300 296 12 0 chr11 1087564 1087645 -147695827 + (ATGGTG)n Simple_repeat Simple_repeat 5 86 0 757 180 6 6 chr11 1087646 1087824 -147695648 + (TGG)n Simple_repeat Simple_repeat 3 180 0 498 192 6 34 chr11 1087870 1088208 -147695264 + (ATGGTG)n Simple_repeat Simple_repeat 1 328 0 375 169 0 56 chr11 1088235 1088377 -147695095 + (ATGGTG)n Simple_repeat Simple_repeat 1 134 0 946 130 120 29 chr11 1088388 1088596 -147694876 + THE1C LTR MaLR 1 227 -148 237 311 27 54 chr11 1088720 1088868 -147694604 + L2 LINE L2 2711 2854 -460 744 127 19 45 chr11 1088902 1089064 -147694408 + THE1C LTR MaLR 195 435 -22 906 173 0 6 chr11 1089075 1089576 -147693896 + (TGG)n Simple_repeat Simple_repeat 1 497 0 438 350 147 3 chr11 1090260 1090600 -147692872 + L2 LINE L2 2925 3313 0 370 212 6 71 chr11 1092365 1092896 -147690576 + (TG)n Simple_repeat Simple_repeat 1 496 0 199 187 0 27 chr11 1092960 1093035 -147690437 + (TG)n Simple_repeat Simple_repeat 2 74 0 323 194 0 58 chr11 1093068 1093259 -147690213 + (TG)n Simple_repeat Simple_repeat 1 180 0 202 56 19 93 chr11 1093314 1093368 -147690104 + (TG)n Simple_repeat Simple_repeat 1 50 0 762 176 7 22 chr11 1093588 1093724 -147689748 - AluJo SINE Alu -178 134 1 271 182 55 0 chr11 1093729 1093784 -147689688 - L2 LINE L2 -15 3257 3200 223 220 0 37 chr11 1093978 1094087 -147689385 + (CCCA)n Simple_repeat Simple_repeat 2 106 0 882 206 0 0 chr11 1094114 1094430 -147689042 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 1773 185 15 10 chr11 1096534 1096929 -147686543 + L1 LINE L1 3709 4105 -2041 5638 120 21 15 chr11 1096932 1097007 -147686465 + L1PA16 LINE L1 4404 4477 -1689 1897 157 0 7 chr11 1097007 1097300 -147686172 + AluJb SINE Alu 1 291 -21 5638 120 21 15 chr11 1097300 1098954 -147684518 + L1PA16 LINE L1 4477 6150 -16 214 274 32 0 chr11 1099307 1099369 -147684103 + L2 LINE L2 3195 3258 -14 198 71 0 0 chr11 1099372 1099400 -147684072 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 184 232 36 0 chr11 1100249 1100305 -147683167 - L3 LINE CR1 -932 645 588 2157 109 3 0 chr11 1100320 1100613 -147682859 - AluSq SINE Alu -19 294 1 265 232 66 60 chr11 1100661 1100812 -147682660 - L1MC5 LINE L1 -933 7028 6877 405 0 0 0 chr11 1101001 1101046 -147682426 + (CA)n Simple_repeat Simple_repeat 2 46 0 487 289 58 0 chr11 1101091 1101299 -147682173 - L1MC5 LINE L1 -2004 5804 5585 826 261 46 25 chr11 1101303 1101587 -147681885 - L1MC5 LINE L1 -2264 5544 5255 589 327 121 32 chr11 1101588 1101934 -147681538 - L1MC5 LINE L1 -893 5253 4877 284 333 23 11 chr11 1103132 1103306 -147680166 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 327 85 0 0 chr11 1103341 1103388 -147680084 + (CGGGGG)n Simple_repeat Simple_repeat 4 50 0 218 260 16 31 chr11 1103405 1103532 -147679940 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 34 55 0 0 chr11 1103571 1103626 -147679846 + GC_rich Low_complexity Low_complexity 1 55 0 33 94 0 0 chr11 1103849 1103945 -147679527 + GC_rich Low_complexity Low_complexity 1 96 0 1721 149 30 7 chr11 1109766 1110062 -147673410 - MER1B DNA MER1_type 0 339 37 391 395 60 10 chr11 1111310 1111620 -147671852 + L1MC4a LINE L1 4711 5043 -1103 2347 81 3 0 chr11 1111717 1112014 -147671458 + AluSp SINE Alu 1 298 -15 353 351 162 16 chr11 1112073 1112264 -147671208 + L1MC4a LINE L1 5255 5473 -2335 546 295 153 3 chr11 1112272 1112560 -147670912 + L1MC4a LINE L1 5532 5862 -1946 739 209 0 0 chr11 1112560 1112694 -147670778 - FLAM_C SINE Alu -8 135 2 463 320 112 44 chr11 1112698 1113082 -147670390 + L1MC4a LINE L1 5858 6267 -1541 5169 181 42 39 chr11 1113258 1113726 -147669746 + L1PA16 LINE L1 3850 4315 -1851 2326 71 3 3 chr11 1113726 1114022 -147669450 - AluY SINE Alu -15 296 1 5169 181 42 39 chr11 1114022 1114683 -147668789 + L1PA16 LINE L1 4315 4972 -1194 1671 116 167 0 chr11 1114683 1114941 -147668531 + AluSq SINE Alu 1 301 -2 5169 181 42 39 chr11 1114941 1115265 -147668207 + L1PA16 LINE L1 4972 5293 -873 2414 49 0 55 chr11 1115265 1115591 -147667881 + AluY SINE Alu 1 308 -3 5169 181 42 39 chr11 1115591 1116419 -147667053 + L1PA16 LINE L1 5293 6161 -5 824 300 79 75 chr11 1116496 1117259 -147666213 + L1MC5 LINE L1 6555 7339 -622 483 33 0 0 chr11 1117259 1117320 -147666152 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 824 300 79 75 chr11 1117320 1117548 -147665924 + L1MC5 LINE L1 7339 7564 -397 258 32 0 0 chr11 1119109 1119140 -147664332 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 379 335 12 12 chr11 1120353 1120523 -147662949 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 186 43 0 0 chr11 1122223 1122246 -147661226 + (CTGGGG)n Simple_repeat Simple_repeat 6 28 0 32 67 0 0 chr11 1122944 1123004 -147660468 + AT_rich Low_complexity Low_complexity 1 60 0 689 148 9 0 chr11 1123779 1123887 -147659585 - FRAM SINE Alu -6 170 62 243 246 35 0 chr11 1124133 1124190 -147659282 - MIR SINE MIR -86 122 64 301 250 27 0 chr11 1124827 1124916 -147658556 - MIR3 SINE MIR -51 157 63 265 284 27 0 chr11 1125393 1125467 -147658005 + MIR SINE MIR 96 171 -91 234 258 65 0 chr11 1126624 1126686 -147656786 + MIR SINE MIR 111 176 -86 1940 131 0 3 chr11 1126772 1127055 -147656417 - AluJo SINE Alu -13 299 18 1245 278 120 48 chr11 1127076 1127889 -147655583 - L1ME1 LINE L1 -5 6161 5276 2043 111 3 19 chr11 1127889 1128196 -147655276 - AluSg SINE Alu -8 302 1 1245 278 120 48 chr11 1128196 1128295 -147655177 - L1ME1 LINE L1 -890 5276 5186 2254 56 45 0 chr11 1128299 1128585 -147654887 - AluY SINE Alu -12 299 1 1091 174 10 0 chr11 1128597 1128793 -147654679 - AluJo SINE Alu -21 291 94 2515 172 61 33 chr11 1128793 1129368 -147654104 - LTR59 LTR ERV1 -6 591 1 309 155 0 0 chr11 1129368 1129426 -147654046 - AluJo SINE Alu -205 97 40 778 252 91 7 chr11 1129426 1129712 -147653760 - L1ME1 LINE L1 -952 5194 4885 495 269 0 0 chr11 1130186 1130506 -147652966 + (TG)n Simple_repeat Simple_repeat 1 320 0 384 283 3 0 chr11 1130553 1130873 -147652599 + (TG)n Simple_repeat Simple_repeat 1 321 0 446 247 6 0 chr11 1130888 1131066 -147652406 + (TG)n Simple_repeat Simple_repeat 1 179 0 181 367 20 10 chr11 1132104 1132202 -147651270 + L2 LINE L2 3150 3248 -24 239 186 314 0 chr11 1133504 1133590 -147649882 - MIR SINE MIR -119 143 31 1072 290 51 0 chr11 1133619 1133991 -147649481 - L1MB7 LINE L1 -18 6166 5776 307 318 99 13 chr11 1134020 1134171 -147649301 + L1MEc LINE L1 2270 2433 -3963 2059 131 68 37 chr11 1134275 1134627 -147648845 + THE1B LTR MaLR 1 363 -1 403 362 69 20 chr11 1134701 1134947 -147648525 + L1MEc LINE L1 2659 2916 -3299 1913 150 0 7 chr11 1135314 1135614 -147647858 - AluSx SINE Alu -14 298 1 318 228 79 50 chr11 1136137 1136238 -147647234 + L1MEc LINE L1 3754 3857 -2358 785 142 45 52 chr11 1136242 1136376 -147647096 + FLAM_C SINE Alu 1 133 0 242 269 84 34 chr11 1136398 1136517 -147646955 + L1MC4 LINE L1 7006 7130 -912 1001 286 74 70 chr11 1136580 1136951 -147646521 + L1MC4 LINE L1 7269 7637 -405 2288 126 5 27 chr11 1136951 1137323 -147646149 - THE1B LTR MaLR 0 364 1 11502 86 5 0 chr11 1137323 1138896 -147644576 - THE1B-int LTR MaLR 0 1580 1 2471 102 5 30 chr11 1138896 1139269 -147644203 - THE1B LTR MaLR 0 364 1 1001 286 74 70 chr11 1139269 1139650 -147643822 + L1MC4 LINE L1 7636 8026 -16 309 250 188 0 chr11 1139842 1139970 -147643502 - L1ME4a LINE L1 -3 6118 5967 3576 126 2 0 chr11 1140117 1140641 -147642831 + MER1A DNA MER1_type 1 525 -2 369 259 12 0 chr11 1140666 1140751 -147642721 + MIR SINE MIR 112 197 -65 225 94 0 0 chr11 1140812 1140844 -147642628 + (TG)n Simple_repeat Simple_repeat 1 32 0 481 331 68 11 chr11 1140975 1141241 -147642231 - L1ME4a LINE L1 -303 5818 5538 367 351 4 30 chr11 1141671 1141902 -147641570 - L2 LINE L2 -280 3033 2809 4363 279 58 40 chr11 1141923 1142779 -147640693 - L1MC2 LINE L1 -1 7807 6967 2243 122 6 3 chr11 1142779 1143090 -147640382 - AluSx SINE Alu 0 312 1 4363 279 58 40 chr11 1143090 1144142 -147639330 - L1MC2 LINE L1 -841 6967 5885 * 9452 193 39 17 chr11 1144138 1145173 -147638299 - L1MB2 LINE L1 -2 6169 5158 2093 135 133 3 chr11 1145173 1145550 -147637922 - MSTB LTR MaLR 0 426 1 9452 193 39 17 chr11 1145550 1147603 -147635869 - L1MB2 LINE L1 -1013 5158 3013 * 18143 128 79 12 chr11 1147599 1149309 -147634163 + L1MA3 LINE L1 10 1604 -5961 2248 108 30 0 chr11 1149309 1149483 -147633989 - AluSp SINE Alu -8 305 117 243 0 0 0 chr11 1149483 1149510 -147633962 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2248 108 30 0 chr11 1149510 1149631 -147633841 - AluSp SINE Alu -196 117 1 18143 128 79 12 chr11 1149631 1150988 -147632484 + L1MA3 LINE L1 1604 3283 -4282 * 28604 110 15 23 chr11 1150977 1154779 -147628693 - L1PA8 LINE L1 -7 6480 2739 2395 97 0 3 chr11 1154779 1155088 -147628384 + AluY SINE Alu 1 308 -3 28604 110 15 23 chr11 1155088 1157799 -147625673 - L1PA8 LINE L1 -3748 2739 6 2136 170 150 33 chr11 1157802 1158786 -147624686 + L1MA3 LINE L1 3258 4395 -3170 343 71 18 0 chr11 1158784 1158840 -147624632 - L1P LINE L1 -1642 4504 4448 * 6284 52 1 1 chr11 1158836 1159639 -147623833 + L1PA7 LINE L1 5330 6132 -22 * 12269 152 20 11 chr11 1159630 1162019 -147621453 + L1MA3 LINE L1 4371 6737 -987 2518 26 0 3 chr11 1162019 1162329 -147621143 + L1PA4 LINE L1 5847 6155 0 12269 152 20 11 chr11 1162329 1163099 -147620373 + L1MA3 LINE L1 6737 7567 -157 1890 163 7 3 chr11 1163099 1163399 -147620073 + AluSx SINE Alu 1 301 -11 12269 152 20 11 chr11 1163399 1163559 -147619913 + L1MA3 LINE L1 7567 7724 0 2039 257 38 36 chr11 1163576 1163682 -147619790 - L1M4 LINE L1 -3137 3009 2905 1082 130 12 0 chr11 1163682 1163851 -147619621 - L1PA10 LINE L1 0 6168 5998 2039 257 38 36 chr11 1163851 1164612 -147618860 - L1M4 LINE L1 -3241 2905 2140 561 202 0 28 chr11 1164595 1164741 -147618731 + L1M1 LINE L1 5588 5724 -499 * 599 237 149 0 chr11 1164738 1164932 -147618540 - L1M4 LINE L1 -1029 5117 4895 843 274 68 12 chr11 1164949 1165584 -147617888 - L1MC4a LINE L1 -585 5657 5261 290 353 35 0 chr11 1165603 1165864 -147617608 - L1MC4a LINE L1 -914 5232 4963 333 279 141 25 chr11 1166086 1166369 -147617103 - L2 LINE L2 -789 2525 2210 1904 149 0 44 chr11 1168616 1168937 -147614535 + AluJo SINE Alu 4 310 -2 1801 160 3 30 chr11 1168945 1169245 -147614227 + AluJo SINE Alu 5 296 -16 223 298 11 11 chr11 1169499 1169593 -147613879 + L2 LINE L2 2911 3004 -309 277 356 40 6 chr11 1171037 1171211 -147612261 + MLT1J LTR MaLR 22 201 -310 2422 40 18 0 chr11 1173179 1173456 -147610016 + AluY SINE Alu 5 286 -25 1275 214 50 15 chr11 1173652 1174000 -147609472 - L1PA16 LINE L1 -1 6165 5808 297 269 66 7 chr11 1174790 1174930 -147608542 + MIR SINE MIR 39 188 -68 307 163 0 0 chr11 1175313 1175362 -147608110 + MER58A DNA MER1_type 40 88 -19 977 198 0 0 chr11 1178099 1178289 -147605183 + AluJb SINE Alu 137 312 0 308 253 147 7 chr11 1178423 1178573 -147604899 + MLT1D LTR MaLR 45 215 -290 829 193 86 6 chr11 1179675 1179881 -147603591 - L1MB3 LINE L1 0 6183 5974 2254 90 0 37 chr11 1181802 1182125 -147601347 - AluSx SINE Alu -1 311 1 180 0 0 0 chr11 1182377 1182397 -147601075 + (T)n Simple_repeat Simple_repeat 1 20 0 644 262 63 9 chr11 1182597 1182818 -147600654 + MLT1D LTR MaLR 8 240 -265 608 303 127 17 chr11 1186028 1186431 -147597041 - L1MB7 LINE L1 0 6184 5738 384 390 47 36 chr11 1187667 1188029 -147595443 - L1MB7 LINE L1 -1167 4979 4614 304 272 76 0 chr11 1188605 1188697 -147594775 - L1MB7 LINE L1 -2322 3824 3726 255 347 8 8 chr11 1189148 1189269 -147594203 + (TG)n Simple_repeat Simple_repeat 1 121 0 365 331 11 22 chr11 1189319 1189500 -147593972 + (TG)n Simple_repeat Simple_repeat 2 180 0 188 326 264 4 chr11 1190425 1190686 -147592786 + L2 LINE L2 2635 2963 -351 356 354 17 17 chr11 1192098 1192276 -147591196 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 268 226 0 0 chr11 1193433 1193486 -147589986 - L2 LINE L2 0 3313 3261 1029 213 16 56 chr11 1195375 1195774 -147587698 - MLT1C LTR MaLR -15 375 18 594 266 85 0 chr11 1195774 1195973 -147587499 + MER58A DNA MER1_type 1 216 -8 1751 174 9 22 chr11 1196326 1196642 -147586830 - AluJb SINE Alu 0 312 1 237 304 22 0 chr11 1196649 1196741 -147586731 - L1MC4 LINE L1 -141 7901 7808 199 205 0 0 chr11 1198906 1198945 -147584527 + L2 LINE L2 2748 2786 -528 220 399 14 14 chr11 1199603 1199746 -147583726 + (CACG)n Simple_repeat Simple_repeat 3 145 0 302 300 0 11 chr11 1200763 1200853 -147582619 + MIR SINE MIR 96 184 -78 2256 268 75 58 chr11 1201088 1201910 -147581562 - L1ME1 LINE L1 -5 6161 5354 1741 165 7 3 chr11 1201910 1202207 -147581265 - AluJo SINE Alu -14 298 1 2256 268 75 58 chr11 1202207 1204078 -147579394 - L1ME1 LINE L1 -812 5354 3452 2710 232 83 60 chr11 1204306 1205283 -147578189 - L1ME1 LINE L1 -2671 3475 2497 399 100 11 89 chr11 1205283 1205373 -147578099 - L1MA5 LINE L1 -1 6299 6217 2710 232 83 60 chr11 1205373 1205733 -147577739 - L1ME1 LINE L1 -3649 2497 2147 1966 134 0 13 chr11 1205837 1206143 -147577329 - AluSx SINE Alu -10 302 1 387 304 144 22 chr11 1206360 1206772 -147576700 - L2 LINE L2 -204 3109 2634 3415 226 49 115 chr11 1209720 1212280 -147571192 - L1ME1 LINE L1 -5 6161 3434 207 0 0 0 chr11 1212280 1212303 -147571169 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3415 226 49 115 chr11 1212303 1212318 -147571154 - L1ME1 LINE L1 -2732 3434 3420 2252 94 0 13 chr11 1212318 1212625 -147570847 - AluSq SINE Alu -10 303 1 3415 226 49 115 chr11 1212625 1212999 -147570473 - L1ME1 LINE L1 -2746 3420 3398 1184 192 108 26 chr11 1214633 1214977 -147568495 - MLT1C LTR MaLR -88 379 8 866 247 49 45 chr11 1215013 1215236 -147568236 + MER58A DNA MER1_type 1 224 0 392 352 102 22 chr11 1215708 1216023 -147567449 + L1M4 LINE L1 2267 2606 -3540 395 308 35 0 chr11 1216082 1216225 -147567247 - MLT1G1 LTR MaLR 0 595 448 254 298 61 35 chr11 1216508 1216706 -147566766 + L1M4 LINE L1 2704 2906 -3240 2401 41 7 3 chr11 1219544 1219839 -147563633 + AluY SINE Alu 16 311 0 364 295 27 0 chr11 1220113 1220225 -147563247 - MIR SINE MIR -71 191 77 205 156 0 0 chr11 1220818 1220850 -147562622 + G-rich Low_complexity Low_complexity 2 33 0 530 205 12 187 chr11 1222698 1222864 -147560608 - L1MB5 LINE L1 -16 6155 6019 2201 239 79 14 chr11 1222893 1222921 -147560551 - L1MB3 LINE L1 0 6183 6158 2161 101 3 7 chr11 1222921 1223218 -147560254 + AluSx SINE Alu 1 296 -16 2201 239 79 14 chr11 1223218 1223751 -147559721 - L1MB3 LINE L1 -25 6158 5570 402 86 35 0 chr11 1223751 1223809 -147559663 - L1MC1 LINE L1 -2 6331 6272 2201 239 79 14 chr11 1223809 1223907 -147559565 - L1MB3 LINE L1 -613 5570 5480 272 323 114 30 chr11 1224306 1224473 -147558999 + L2 LINE L2 3119 3299 -14 822 287 42 51 chr11 1224699 1225148 -147558324 + L1M4 LINE L1 3661 4105 -2041 560 224 8 0 chr11 1225240 1225374 -147558098 - Charlie1 DNA MER1_type -4 2757 2623 * 620 218 198 0 chr11 1225358 1225560 -147557912 - Charlie1 DNA MER1_type -2519 242 1 369 369 88 17 chr11 1225654 1226460 -147557012 + L1M4 LINE L1 4308 5170 -976 275 186 29 14 chr11 1226481 1226551 -147556921 + Charlie1 DNA MER1_type 68 138 -2623 383 328 90 16 chr11 1226678 1226934 -147556538 + L1M4 LINE L1 5370 5644 -534 370 316 208 17 chr11 1227429 1227922 -147555550 + L2 LINE L2 2718 3306 -7 927 227 58 5 chr11 1228032 1228239 -147555233 - MER20 DNA MER1_type 0 219 2 200 391 40 59 chr11 1229743 1229996 -147553476 - L2 LINE L2 0 3272 3025 425 317 218 20 chr11 1230075 1230677 -147552795 - L2 LINE L2 -559 2755 2035 281 302 123 34 chr11 1232220 1232399 -147551073 - MIR SINE MIR -66 196 2 183 244 0 24 chr11 1239669 1239710 -147543762 + MIR SINE MIR 111 150 -58 360 0 0 0 chr11 1240041 1240081 -147543391 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 251 317 85 75 chr11 1240083 1240389 -147543083 - L2 LINE L2 -14 3258 2950 310 316 147 11 chr11 1240440 1240617 -147542855 + MIR SINE MIR 62 262 0 2066 167 30 8 chr11 1241663 1242065 -147541407 + L1MD1 LINE L1 5832 6242 0 24 0 0 0 chr11 1242330 1242354 -147541118 + AT_rich Low_complexity Low_complexity 1 24 0 2014 138 7 0 chr11 1242364 1242669 -147540803 + AluSx SINE Alu 1 307 -5 788 265 103 0 chr11 1243063 1243267 -147540205 - MIR SINE MIR -27 235 11 629 359 84 15 chr11 1243977 1244454 -147539018 + L1MC4a LINE L1 4742 5251 -895 659 263 115 7 chr11 1244496 1244766 -147538706 + L1MC4a LINE L1 5326 5624 -2184 264 271 119 25 chr11 1245512 1245630 -147537842 + L1MC4a LINE L1 5738 5866 -1942 269 222 0 0 chr11 1246384 1246438 -147537034 + L1MC4a LINE L1 5879 5932 -1876 243 0 0 0 chr11 1247696 1247723 -147535749 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1248130 1248171 -147535301 + (CACG)n Simple_repeat Simple_repeat 3 43 0 329 267 60 26 chr11 1249806 1249922 -147533550 + MIR SINE MIR 16 135 -73 330 263 135 23 chr11 1251943 1252076 -147531396 + MIR3 SINE MIR 33 180 -28 198 290 40 81 chr11 1252046 1252170 -147531302 + L2 LINE L2 3146 3264 -8 * 270 259 129 0 chr11 1252864 1252949 -147530523 - MIR SINE MIR -80 182 87 226 297 62 28 chr11 1253043 1253188 -147530284 + L1ME3A LINE L1 4416 4565 -1581 1058 311 30 20 chr11 1253317 1253821 -147529651 + L1ME3A LINE L1 4725 5233 -913 1825 279 100 17 chr11 1253876 1254715 -147528757 + L1ME3A LINE L1 5260 6168 -2 199 356 22 30 chr11 1255299 1255434 -147528038 - MIR3 SINE MIR -72 136 3 256 271 143 97 chr11 1261701 1262073 -147521399 - L1MC/D LINE L1 -746 5400 5209 2146 234 94 11 chr11 1262329 1263278 -147520194 + L1MB5 LINE L1 4975 5996 -178 * 6918 188 166 74 chr11 1262671 1264398 -147519074 + L1MD3 LINE L1 5367 7491 -504 562 178 16 47 chr11 1264398 1264527 -147518945 + MLT1F1 LTR MaLR 1 125 -442 6918 188 166 74 chr11 1264527 1265052 -147518420 + L1MD3 LINE L1 7491 7966 -29 1324 257 138 37 chr11 1265065 1266030 -147517442 + L1ME LINE L1 4370 5432 -730 206 227 186 72 chr11 1266232 1266329 -147517143 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1267434 1267455 -147516017 + AT_rich Low_complexity Low_complexity 1 21 0 304 162 212 50 chr11 1267459 1267558 -147515914 + L1ME4a LINE L1 5961 6075 -46 853 253 98 105 chr11 1268573 1269154 -147514318 + MLT1K LTR MaLR 2 578 -10 187 261 250 0 chr11 1270917 1271005 -147512467 - L2 LINE L2 -10 3262 3153 331 288 140 39 chr11 1271009 1271238 -147512234 + LTR16C LTR ERVL 42 293 -198 589 316 90 17 chr11 1271333 1271621 -147511851 - L2 LINE L2 -555 2759 2451 9329 184 65 40 chr11 1271953 1274331 -147509141 + L1MA5 LINE L1 1418 3734 -3114 1410 169 48 11 chr11 1274331 1274603 -147508869 - AluJb SINE Alu -30 282 1 9329 184 65 40 chr11 1274603 1275723 -147507749 + L1MA5 LINE L1 3734 5026 -1822 1431 191 38 0 chr11 1275723 1275990 -147507482 + AluJb SINE Alu 5 281 -31 9329 184 65 40 chr11 1275990 1276283 -147507189 + L1MA5 LINE L1 5026 5310 -1538 * 12252 206 40 13 chr11 1276282 1280053 -147503419 + L1MA4A LINE L1 1 4045 -2803 5270 153 72 9 chr11 1280049 1281967 -147501505 + L1MA4A LINE L1 4959 7005 0 * 1097 202 0 0 chr11 1281976 1282179 -147501293 + AluJo SINE Alu 27 229 -83 43056 54 4 9 chr11 1282180 1288361 -147495111 + L1PA5 LINE L1 2 6149 -5 664 175 0 14 chr11 1288396 1288539 -147494933 + L1MA5 LINE L1 5302 5442 -1406 1036 257 13 13 chr11 1288539 1288765 -147494707 - MER8 DNA MER2_type 0 239 14 3267 164 83 6 chr11 1288765 1289851 -147493621 + L1MA5 LINE L1 5449 6602 -400 937 127 24 24 chr11 1289851 1290012 -147493460 + L1MA5 LINE L1 6838 7002 0 1192 197 86 37 chr11 1290012 1290328 -147493144 + L1MB3 LINE L1 3980 4324 -1822 2434 85 0 3 chr11 1290328 1290635 -147492837 - AluY SINE Alu -5 306 1 1192 197 86 37 chr11 1290635 1290705 -147492767 + L1MB3 LINE L1 4324 4389 -1757 307 333 16 32 chr11 1290723 1290849 -147492623 + L1MA9 LINE L1 2154 2277 -5289 2782 267 42 24 chr11 1290851 1292055 -147491417 + L1MA9 LINE L1 2096 3404 -4162 5038 186 53 67 chr11 1292063 1294490 -147488982 + L1MA9 LINE L1 5006 7149 -582 1699 179 3 7 chr11 1294490 1294786 -147488686 + AluJo SINE Alu 6 300 -12 5038 186 53 67 chr11 1294786 1295361 -147488111 + L1MA9 LINE L1 7149 7731 0 3055 193 46 102 chr11 1295357 1295709 -147487763 + L1MB3 LINE L1 4389 4759 -1421 * 1517 221 10 0 chr11 1295709 1296003 -147487469 + AluJb SINE Alu 1 297 -15 3055 193 46 102 chr11 1296003 1296668 -147486804 + L1MB3 LINE L1 4759 5329 -851 2285 79 24 0 chr11 1296668 1296958 -147486514 + AluY SINE Alu 1 297 -14 3055 193 46 102 chr11 1296958 1297093 -147486379 + L1MB3 LINE L1 5329 5470 -710 809 225 6 50 chr11 1297093 1297275 -147486197 + AluJb SINE Alu 116 289 -23 3803 168 23 12 chr11 1297283 1297975 -147485497 + L1MB3 LINE L1 5480 6179 -4 2022 185 14 24 chr11 1297995 1298690 -147484782 + L1M1 LINE L1 5029 5677 -625 4470 142 13 38 chr11 1298697 1299210 -147484262 + L1MC1 LINE L1 5586 6075 -258 2034 110 190 19 chr11 1299210 1299574 -147483898 - MSTA LTR MaLR -2 426 1 4470 142 13 38 chr11 1299574 1299826 -147483646 + L1MC1 LINE L1 6075 6332 -1 1272 226 51 17 chr11 1299831 1300410 -147483062 + L1MC4a LINE L1 2213 2810 -3572 * 9286 193 68 30 chr11 1300408 1300986 -147482486 + L1MA9 LINE L1 3127 3681 -2867 5611 115 21 53 chr11 1300986 1301259 -147482213 + L1PA16 LINE L1 5151 5431 -735 2212 121 0 3 chr11 1301259 1301613 -147481859 + AluSx SINE Alu 1 312 0 5611 115 21 53 chr11 1301613 1302021 -147481451 + L1PA16 LINE L1 5431 5791 -375 2400 86 3 0 chr11 1302021 1302325 -147481147 + AluSp SINE Alu 1 305 -8 5611 115 21 53 chr11 1302325 1302684 -147480788 + L1PA16 LINE L1 5791 6160 -6 9286 193 68 30 chr11 1302684 1304117 -147479355 + L1MA9 LINE L1 3681 5058 -1490 1332 118 81 5 chr11 1304117 1304328 -147479144 - MER30 DNA MER1_type -3 227 1 9286 193 68 30 chr11 1304328 1305527 -147477945 + L1MA9 LINE L1 5058 6466 -82 26 0 0 0 chr11 1305547 1305573 -147477899 + AT_rich Low_complexity Low_complexity 1 26 0 7908 219 53 47 chr11 1305589 1308115 -147475357 + L1MC4a LINE L1 2811 5351 -1031 363 132 0 0 chr11 1308110 1308163 -147475309 + L1MB5 LINE L1 6084 6136 -38 * 1207 251 126 10 chr11 1308444 1308858 -147474614 + L1MC4a LINE L1 5964 6425 -1619 2133 230 61 96 chr11 1309249 1310137 -147473335 + L1M4 LINE L1 649 1505 -5037 1957 134 124 0 chr11 1310142 1310441 -147473031 - MER1B DNA MER1_type -1 336 1 1287 216 37 67 chr11 1310671 1311025 -147472447 + L1M4 LINE L1 2529 2814 -3830 2051 141 27 0 chr11 1311025 1311324 -147472148 + AluSx SINE Alu 1 307 -5 1287 216 37 67 chr11 1311324 1311539 -147471933 + L1M4 LINE L1 2814 3034 -3610 299 177 0 51 chr11 1311566 1311645 -147471827 - L1M4 LINE L1 -3549 2597 2523 7395 236 40 98 chr11 1311712 1313748 -147469724 + L1MB8 LINE L1 1503 3656 -2591 1339 172 51 99 chr11 1313748 1314062 -147469410 + AluJo SINE Alu 1 299 -3 7395 236 40 98 chr11 1314062 1314827 -147468645 + L1MB8 LINE L1 3656 4464 -1783 2225 156 28 8 chr11 1314827 1315185 -147468287 - MLT1A1 LTR MaLR 0 365 1 7395 236 40 98 chr11 1315185 1315334 -147468138 + L1MB8 LINE L1 4464 4620 -1627 2526 77 0 3 chr11 1315334 1315644 -147467828 + AluY SINE Alu 1 309 -2 7395 236 40 98 chr11 1315644 1315833 -147467639 + L1MB8 LINE L1 4620 4818 -1429 2517 151 57 5 chr11 1315833 1316237 -147467235 - MSTB LTR MaLR 0 426 2 7395 236 40 98 chr11 1316237 1316421 -147467051 + L1MB8 LINE L1 4818 5011 -1236 445 167 52 0 chr11 1316421 1316517 -147466955 + L1MB3 LINE L1 6083 6183 0 7395 236 40 98 chr11 1316517 1317689 -147465783 + L1MB8 LINE L1 5011 5670 -577 2154 101 3 3 chr11 1317695 1317991 -147465481 + AluSg SINE Alu 1 296 -14 1237 172 33 25 chr11 1318004 1318248 -147465224 + L1MB8 LINE L1 5923 6168 -79 747 179 22 8 chr11 1318253 1318387 -147465085 + Tigger1 DNA MER2_type 22 157 -2261 * 1427 105 29 5 chr11 1318376 1318586 -147464886 + Tigger1 DNA MER2_type 2202 2416 -2 551 131 0 0 chr11 1318586 1318670 -147464802 + L1MB8 LINE L1 6164 6247 0 4197 222 43 20 chr11 1318675 1319326 -147464146 + L1MD1 LINE L1 5050 5746 -496 2326 163 65 45 chr11 1319326 1319817 -147463655 - MLT1D LTR MaLR 0 505 5 4197 222 43 20 chr11 1319817 1320318 -147463154 + L1MD1 LINE L1 5746 6234 -8 696 150 55 8 chr11 1320333 1320460 -147463012 + L1M4 LINE L1 5320 5452 -732 1782 265 85 38 chr11 1320595 1321356 -147462116 + L1MC4 LINE L1 7244 8040 -2 876 200 184 0 chr11 1321402 1321587 -147461885 + MER20 DNA MER1_type 1 219 0 2148 160 12 54 chr11 1321736 1322143 -147461329 + MLT1B LTR MaLR 1 390 0 628 273 41 5 chr11 1322780 1322974 -147460498 - MIR SINE MIR -49 213 13 876 294 130 48 chr11 1323212 1324058 -147459414 + L1M4 LINE L1 2703 3617 -2529 967 280 76 16 chr11 1324230 1324662 -147458810 - L1MC/D LINE L1 -2039 5769 5312 30 27 0 0 chr11 1324782 1324819 -147458653 + AT_rich Low_complexity Low_complexity 1 37 0 2575 232 32 44 chr11 1324822 1325599 -147457873 - L1ME1 LINE L1 -4 6162 5395 4502 114 25 7 chr11 1325599 1326316 -147457156 - Tigger1 DNA MER2_type -656 1762 1 726 243 11 0 chr11 1326325 1326502 -147456970 - L1ME1 LINE L1 -1778 4368 4190 1343 302 85 28 chr11 1326505 1327545 -147455927 + L1MEd LINE L1 447 1588 -4722 189 204 143 0 chr11 1328729 1328778 -147454694 - L2 LINE L2 -339 2975 2920 285 222 56 0 chr11 1333337 1333409 -147450063 - L2 LINE L2 -307 3006 2931 449 96 0 101 chr11 1336981 1337179 -147446293 + (CA)n Simple_repeat Simple_repeat 2 179 0 282 232 0 0 chr11 1337193 1337357 -147446115 + (CA)n Simple_repeat Simple_repeat 2 165 0 394 237 39 19 chr11 1337447 1337614 -147445858 + (CATA)n Simple_repeat Simple_repeat 2 153 0 231 152 30 15 chr11 1337642 1337708 -147445764 + (CA)n Simple_repeat Simple_repeat 2 68 0 367 221 182 0 chr11 1341148 1341302 -147442170 + Charlie1 DNA MER1_type 2436 2617 -144 27 0 0 0 chr11 1341617 1341644 -147441828 + AT_rich Low_complexity Low_complexity 1 27 0 189 383 11 11 chr11 1343412 1343506 -147439966 + MIR SINE MIR 77 170 -92 274 155 52 0 chr11 1344285 1344343 -147439129 + L2 LINE L2 3006 3066 -206 217 333 0 0 chr11 1344669 1344729 -147438743 - MIR SINE MIR -109 153 94 351 247 137 93 chr11 1345505 1345869 -147437603 + MLT1B LTR MaLR 1 380 -10 340 291 10 0 chr11 1348191 1348294 -147435178 - MER45C DNA AcHobo -129 824 721 544 289 0 6 chr11 1348376 1348535 -147434937 - MER45C DNA AcHobo -738 215 58 197 217 66 57 chr11 1349966 1350072 -147433400 - MIR SINE MIR -62 146 40 242 236 79 71 chr11 1351841 1351968 -147431504 + MIR SINE MIR 113 240 -22 2252 92 0 16 chr11 1352501 1352816 -147430656 + AluSg SINE Alu 1 310 0 279 351 36 0 chr11 1352926 1353037 -147430435 + L2 LINE L2 3199 3313 0 2194 81 0 39 chr11 1353359 1353698 -147429774 - AluSx SINE Alu 0 312 1 206 296 0 0 chr11 1355197 1355251 -147428221 - MIR SINE MIR -114 148 95 851 199 0 5 chr11 1356185 1356377 -147427095 + L1M3 LINE L1 5281 5467 -698 190 329 41 0 chr11 1357934 1358007 -147425465 - L2 LINE L2 -18 3295 3220 309 346 31 25 chr11 1360117 1360276 -147423196 + L2 LINE L2 3113 3272 0 4687 173 34 12 chr11 1361273 1363005 -147420467 + L1MB7 LINE L1 4424 6175 -9 308 286 93 39 chr11 1364637 1364819 -147418653 + MIR SINE MIR 3 194 -14 2251 215 122 8 chr11 1365870 1366377 -147417095 - MLT1F1 LTR MaLR -2 565 1 190 322 46 35 chr11 1366534 1366621 -147416851 + L2 LINE L2 3214 3301 -12 492 297 92 20 chr11 1367740 1367989 -147415483 + L2 LINE L2 2551 2817 -497 230 358 43 12 chr11 1369013 1369175 -147414297 - MIR3 SINE MIR -8 200 34 195 260 80 0 chr11 1370221 1370271 -147413201 + L2 LINE L2 3180 3233 -80 796 295 70 17 chr11 1370672 1370974 -147412498 - MER45C DNA AcHobo -616 337 20 25 51 0 0 chr11 1371702 1371741 -147411731 + GC_rich Low_complexity Low_complexity 1 39 0 272 323 114 30 chr11 1374223 1374390 -147409082 + L2 LINE L2 3119 3299 -14 822 287 42 51 chr11 1374616 1375065 -147408407 + L1M4 LINE L1 3661 4105 -2041 560 224 8 0 chr11 1375157 1375291 -147408181 - Charlie1 DNA MER1_type -4 2757 2623 * 620 218 198 0 chr11 1375275 1375477 -147407995 - Charlie1 DNA MER1_type -2519 242 1 369 369 88 17 chr11 1375571 1376377 -147407095 + L1M4 LINE L1 4308 5170 -976 275 186 29 14 chr11 1376398 1376468 -147407004 + Charlie1 DNA MER1_type 68 138 -2623 383 328 90 16 chr11 1376595 1376851 -147406621 + L1M4 LINE L1 5370 5644 -534 370 316 208 17 chr11 1377346 1377839 -147405633 + L2 LINE L2 2718 3306 -7 927 227 58 5 chr11 1377949 1378156 -147405316 - MER20 DNA MER1_type 0 219 2 200 391 40 59 chr11 1379660 1379913 -147403559 - L2 LINE L2 0 3272 3025 425 317 218 20 chr11 1379992 1380594 -147402878 - L2 LINE L2 -559 2755 2035 281 302 123 34 chr11 1382137 1382316 -147401156 - MIR SINE MIR -66 196 2 360 0 0 0 chr11 1389952 1389992 -147393480 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 229 356 69 59 chr11 1389994 1390314 -147393158 - L2 LINE L2 -14 3258 2936 288 339 136 0 chr11 1390351 1390528 -147392944 + MIR SINE MIR 62 262 0 2156 167 30 8 chr11 1391574 1391976 -147391496 + L1MD1 LINE L1 5832 6242 0 317 332 52 57 chr11 1392011 1392240 -147391232 + L1MC4a LINE L1 4407 4634 -1512 24 0 0 0 chr11 1392241 1392265 -147391207 + AT_rich Low_complexity Low_complexity 1 24 0 2039 138 7 0 chr11 1392275 1392580 -147390892 + AluSx SINE Alu 1 307 -5 728 265 103 0 chr11 1392974 1393178 -147390294 - MIR SINE MIR -27 235 11 725 371 80 11 chr11 1393888 1394365 -147389107 + L1MC4a LINE L1 4742 5251 -895 621 263 115 7 chr11 1394407 1394677 -147388795 + L1MC4a LINE L1 5326 5624 -2184 259 271 119 25 chr11 1395423 1395541 -147387931 + L1MC4a LINE L1 5738 5866 -1942 404 308 36 56 chr11 1396295 1396490 -147386982 + L1MC4a LINE L1 5879 6069 -1739 243 0 0 0 chr11 1397603 1397630 -147385842 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1398037 1398078 -147385394 + (CACG)n Simple_repeat Simple_repeat 3 43 0 316 284 52 17 chr11 1399713 1399829 -147383643 + MIR SINE MIR 16 135 -73 328 308 23 30 chr11 1401849 1401982 -147381490 + MIR3 SINE MIR 49 180 -28 183 375 31 10 chr11 1401980 1402076 -147381396 + L2 LINE L2 3167 3264 -8 * 265 342 114 6 chr11 1402697 1402855 -147380617 - MIR SINE MIR -1 261 87 1935 314 78 18 chr11 1402949 1404620 -147378852 + L1ME3A LINE L1 4416 6168 -2 216 356 22 30 chr11 1405204 1405339 -147378133 - MIR3 SINE MIR -72 136 3 272 285 135 89 chr11 1411605 1411977 -147371495 - L1MC/D LINE L1 -746 5400 5209 6497 209 135 53 chr11 1412233 1414301 -147369171 + L1MD3 LINE L1 4975 7486 -509 538 178 16 47 chr11 1414301 1414430 -147369042 + MLT1F1 LTR MaLR 1 125 -442 6497 209 135 53 chr11 1414430 1414955 -147368517 + L1MD3 LINE L1 7486 7966 -29 1357 272 129 29 chr11 1414968 1415932 -147367540 + L1M4 LINE L1 4370 5429 -733 181 227 186 72 chr11 1416135 1416232 -147367240 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1417336 1417357 -147366115 + AT_rich Low_complexity Low_complexity 1 21 0 274 161 169 97 chr11 1417361 1417485 -147365987 + L1ME4a LINE L1 5961 6093 -28 896 267 91 98 chr11 1418475 1419056 -147364416 + MLT1K LTR MaLR 2 578 -10 342 301 131 31 chr11 1420912 1421141 -147362331 + LTR16C LTR ERVL 42 293 -198 521 333 87 14 chr11 1421236 1421524 -147361948 - L2 LINE L2 -555 2759 2451 5414 197 70 27 chr11 1421856 1424235 -147359237 + L1M2 LINE L1 1418 3943 -2905 1441 169 48 11 chr11 1424235 1424507 -147358965 - AluJb SINE Alu -30 282 1 5414 197 70 27 chr11 1424507 1424960 -147358512 + L1M2 LINE L1 3943 4375 -2473 405 239 23 14 chr11 1425077 1425216 -147358256 - MLT1H LTR MaLR -406 143 1 189 358 47 34 chr11 1426162 1426310 -147357162 - MIR3 SINE MIR -25 183 34 258 81 0 0 chr11 1429455 1429492 -147353980 + (GA)n Simple_repeat Simple_repeat 2 38 0 188 151 170 19 chr11 1438752 1438805 -147344667 + MIR3 SINE MIR 96 156 -52 436 228 31 6 chr11 1438856 1439011 -147344461 - MIR SINE MIR -43 219 61 1521 283 63 67 chr11 1440000 1441241 -147342231 - L1M4 LINE L1 -2353 3793 2558 5672 200 41 28 chr11 1441244 1443117 -147340355 - L1ME LINE L1 -549 5600 3706 511 320 95 54 chr11 1443159 1443557 -147339915 - L1MEd LINE L1 -2811 3318 1878 1190 308 91 37 chr11 1443697 1445192 -147338280 - L1MEd LINE L1 -4573 1737 113 1354 186 48 11 chr11 1445195 1445549 -147337923 - Charlie5 DNA MER1_type -11 2601 2235 29 0 0 0 chr11 1445553 1445582 -147337890 + AT_rich Low_complexity Low_complexity 1 29 0 308 381 14 36 chr11 1446892 1447031 -147336441 + L1MC/D LINE L1 5467 5602 -2206 235 208 94 62 chr11 1448276 1448372 -147335100 + MIR SINE MIR 31 129 -133 195 350 36 44 chr11 1448473 1448610 -147334862 + MIR3 SINE MIR 2 137 -71 318 295 74 20 chr11 1450266 1450415 -147333057 - L2 LINE L2 -309 3004 2848 466 145 0 0 chr11 1451030 1451099 -147332373 + AluJ/FLAM SINE Alu 1 69 -243 1016 183 0 0 chr11 1451099 1451263 -147332209 + AluJo/FRAM SINE Alu 137 300 -12 247 279 0 15 chr11 1456502 1456570 -147326902 + G-rich Low_complexity Low_complexity 2 68 0 420 320 90 8 chr11 1456627 1456861 -147326611 - L2 LINE L2 -254 3059 2807 262 0 53 0 chr11 1456997 1457035 -147326437 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 152 63 13 chr11 1457059 1457217 -147326255 + (TG)n Simple_repeat Simple_repeat 2 167 0 224 295 71 36 chr11 1457562 1457674 -147325798 - MIR SINE MIR -62 146 31 321 290 73 17 chr11 1458220 1458367 -147325105 + MIR SINE MIR 5 148 -62 1046 261 46 4 chr11 1458993 1459326 -147324146 - MLT1A2 LTR MaLR -23 444 1 320 267 103 0 chr11 1461913 1462029 -147321443 - MIR SINE MIR -120 142 15 226 333 0 0 chr11 1462429 1462486 -147320986 - MIR SINE MIR -93 169 113 821 251 5 5 chr11 1463120 1463319 -147320153 + MER58A DNA MER1_type 26 224 0 407 324 91 16 chr11 1463403 1463656 -147319816 + L1ME LINE L1 5539 5810 -311 201 132 0 0 chr11 1463921 1463959 -147319513 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 214 319 0 30 chr11 1465283 1465418 -147318054 + C-rich Low_complexity Low_complexity 2 132 0 208 410 35 0 chr11 1465549 1465693 -147317779 + MIR SINE MIR 91 239 -23 207 69 0 0 chr11 1466206 1466235 -147317237 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 530 229 6 0 chr11 1466488 1466667 -147316805 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr11 1466668 1466698 -147316774 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 482 144 19 0 chr11 1466828 1466932 -147316540 - HAL1b LINE L1 -278 1070 965 417 352 20 52 chr11 1467047 1467297 -147316175 - HAL1b LINE L1 -534 814 573 1128 341 85 1 chr11 1467492 1468236 -147315236 - HAL1 LINE L1 -725 1782 977 322 188 35 0 chr11 1469888 1469973 -147313499 + CT-rich Low_complexity Low_complexity 4 91 0 325 299 75 21 chr11 1470209 1470450 -147313022 + L2 LINE L2 2634 2887 -427 190 372 35 26 chr11 1470654 1470767 -147312705 + L2 LINE L2 3180 3293 -20 254 235 10 0 chr11 1471503 1471605 -147311867 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 698 208 12 0 chr11 1471621 1472054 -147311418 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 389 239 17 6 chr11 1472065 1472241 -147311231 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 342 159 0 0 chr11 1472230 1472299 -147311173 + GA-rich Low_complexity Low_complexity 1 69 0 * 192 333 200 0 chr11 1472664 1472769 -147310703 - MIR SINE MIR -2 260 135 271 253 12 0 chr11 1474293 1474376 -147309096 + L2 LINE L2 2891 2974 -339 351 167 51 0 chr11 1475523 1475601 -147307871 - MER103 DNA DNA -67 99 18 234 62 0 0 chr11 1476716 1476748 -147306724 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 227 326 63 0 chr11 1476753 1476848 -147306624 - L2 LINE L2 -36 3236 3136 366 333 165 12 chr11 1477099 1477354 -147306118 - L1 LINE L1 -2310 3836 3543 297 313 144 16 chr11 1477410 1478040 -147305432 - L1 LINE L1 -2665 3481 2771 264 30 0 0 chr11 1478181 1478214 -147305258 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1514 194 110 22 chr11 1479498 1479942 -147303530 + MLT1D LTR MaLR 23 505 0 196 313 119 99 chr11 1479949 1480351 -147303121 - L2 LINE L2 -46 3226 2817 352 288 59 13 chr11 1480466 1480702 -147302770 + HAL1 LINE L1 1017 1263 -1244 697 247 142 78 chr11 1480713 1481264 -147302208 + HAL1 LINE L1 1337 1922 -585 281 233 0 22 chr11 1481690 1481780 -147301692 + (CA)n Simple_repeat Simple_repeat 1 88 0 267 289 198 0 chr11 1483179 1483300 -147300172 - L2 LINE L2 -9 3263 3119 184 268 0 0 chr11 1484364 1484405 -147299067 - L2 LINE L2 -31 3241 3201 571 340 41 16 chr11 1484927 1485242 -147298230 - MLT1J LTR MaLR -148 363 41 237 384 133 17 chr11 1485304 1485778 -147297694 - L2 LINE L2 -769 2545 2017 406 275 42 75 chr11 1485908 1486148 -147297324 + HAL1 LINE L1 6 237 -2270 395 311 40 31 chr11 1486197 1486419 -147297053 + HAL1 LINE L1 391 614 -1893 2346 237 77 46 chr11 1486426 1487420 -147296052 + HAL1 LINE L1 1392 2415 -92 330 104 0 78 chr11 1487545 1487660 -147295812 + (GGA)n Simple_repeat Simple_repeat 1 106 0 213 261 0 0 chr11 1488459 1488505 -147294967 + MIR3 SINE MIR 109 154 -54 225 441 11 0 chr11 1488596 1488775 -147294697 + MIR SINE MIR 36 216 -46 194 336 58 73 chr11 1489030 1489167 -147294305 + L2 LINE L2 3022 3156 -116 224 202 8 40 chr11 1489212 1489336 -147294136 + C-rich Low_complexity Low_complexity 1 120 0 251 210 7 91 chr11 1491727 1491870 -147291602 + (ACGTG)n Simple_repeat Simple_repeat 5 135 0 303 28 0 0 chr11 1493007 1493043 -147290429 + (CA)n Simple_repeat Simple_repeat 1 36 0 294 304 174 66 chr11 1493125 1493549 -147289923 - L2 LINE L2 -6 3307 2838 217 259 103 52 chr11 1493755 1493929 -147289543 - L2 LINE L2 -2678 636 454 205 299 73 15 chr11 1495270 1495407 -147288065 - L2 LINE L2 -213 3059 2915 1902 147 180 11 chr11 1497590 1497957 -147285515 - Tigger2a DNA MER2_type -2 432 4 210 372 75 21 chr11 1498540 1498728 -147284744 - L2 LINE L2 -14 3299 3102 245 327 154 29 chr11 1498861 1499069 -147284403 - L2 LINE L2 -509 2805 2572 689 321 11 0 chr11 1500398 1500585 -147282887 - MIR SINE MIR -28 234 46 230 238 32 16 chr11 1509238 1509301 -147274171 + L2 LINE L2 3209 3272 0 2321 51 27 10 chr11 1509710 1510004 -147273468 - AluY SINE Alu -12 299 1 198 207 0 0 chr11 1511852 1511910 -147271562 + (CA)n Simple_repeat Simple_repeat 2 59 0 317 247 6 0 chr11 1511926 1512092 -147271380 + (CA)n Simple_repeat Simple_repeat 1 167 0 239 333 21 0 chr11 1513524 1513620 -147269852 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1513758 1514047 -147269425 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1515246 1515375 -147268097 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1517388 1517475 -147265997 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1519559 1519614 -147263858 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1519904 1519970 -147263502 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1520009 1520046 -147263426 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1520361 1520405 -147263067 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1520495 1520545 -147262927 + GC_rich Low_complexity Low_complexity 1 50 0 304 345 90 55 chr11 1521043 1521134 -147262338 + HAL1 LINE L1 1004 1090 -1417 1495 177 75 17 chr11 1521134 1521428 -147262044 + AluJb SINE Alu 2 312 0 304 345 90 55 chr11 1521428 1521626 -147261846 + HAL1 LINE L1 1090 1303 -1204 764 186 0 0 chr11 1522878 1523002 -147260470 + FLAM_A SINE Alu 1 124 -9 1758 140 0 29 chr11 1523018 1523296 -147260176 + AluJo SINE Alu 19 288 -24 24 0 0 0 chr11 1523296 1523320 -147260152 + AT_rich Low_complexity Low_complexity 1 24 0 398 304 33 76 chr11 1523334 1523518 -147259954 + L1ME4a LINE L1 5944 6119 -2 196 354 13 0 chr11 1523954 1524033 -147259439 - MIR SINE MIR -84 124 45 1976 176 43 5 chr11 1524646 1525022 -147258450 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1525679 1525734 -147257738 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1526294 1526332 -147257140 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1527261 1527329 -147256143 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1529917 1530249 -147253223 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1530440 1530487 -147252985 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1530488 1530814 -147252658 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1530816 1530893 -147252579 - AluSp SINE Alu -181 132 56 954 187 88 75 chr11 1530894 1531130 -147252342 - MLT1A1 LTR MaLR -38 327 96 2050 126 3 19 chr11 1531130 1531447 -147252025 - AluSx SINE Alu 0 312 1 1513 173 47 20 chr11 1531448 1531749 -147251723 - AluJo SINE Alu -3 309 1 954 187 88 75 chr11 1531749 1531815 -147251657 - MLT1A1 LTR MaLR -268 97 19 252 294 59 12 chr11 1532186 1532271 -147251201 - MIR3 SINE MIR -11 197 109 859 175 0 0 chr11 1533229 1533372 -147250100 - FLAM_C SINE Alu 0 143 1 313 289 66 33 chr11 1533373 1533525 -147249947 + L1MC5 LINE L1 7760 7916 -45 296 283 42 17 chr11 1533615 1533735 -147249737 + (CATATA)n Simple_repeat Simple_repeat 2 124 0 1849 151 3 10 chr11 1533992 1534283 -147249189 - AluJb SINE Alu -3 309 21 576 299 97 30 chr11 1534393 1534790 -147248682 + MLT1G1 LTR MaLR 12 535 -60 2254 87 3 10 chr11 1534790 1535100 -147248372 - AluY SINE Alu -3 308 1 576 299 97 30 chr11 1535100 1535166 -147248306 + MLT1G1 LTR MaLR 535 595 0 2188 104 0 0 chr11 1535542 1535839 -147247633 - AluY SINE Alu -14 297 1 1762 157 0 41 chr11 1535841 1536159 -147247313 - AluJb SINE Alu -7 305 1 400 341 97 19 chr11 1536576 1536896 -147246576 - MLT1I LTR MaLR -23 386 42 3131 162 34 24 chr11 1537161 1537783 -147245689 + L1MC1 LINE L1 5540 6167 -166 239 302 52 10 chr11 1537963 1538059 -147245413 + L2 LINE L2 3174 3273 -40 260 326 132 21 chr11 1538572 1538716 -147244756 + MIR SINE MIR 1 160 -102 233 235 176 29 chr11 1539016 1539118 -147244354 - MIR3 SINE MIR -7 201 85 261 119 0 0 chr11 1541208 1541250 -147242222 + (T)n Simple_repeat Simple_repeat 1 42 0 39 92 0 0 chr11 1541755 1541864 -147241608 + GC_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr11 1541941 1541964 -147241508 + GC_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 1541988 1542033 -147241439 + GC_rich Low_complexity Low_complexity 1 45 0 223 179 45 15 chr11 1542238 1542305 -147241167 + (CCGGG)n Simple_repeat Simple_repeat 3 71 0 447 278 0 0 chr11 1542488 1542664 -147240808 + (CTGGGG)n Simple_repeat Simple_repeat 3 178 0 233 170 0 38 chr11 1543159 1543212 -147240260 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr11 1543445 1543484 -147239988 + GC_rich Low_complexity Low_complexity 1 39 0 213 125 62 0 chr11 1543535 1543583 -147239889 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 226 217 9 47 chr11 1543604 1543710 -147239762 + G-rich Low_complexity Low_complexity 1 102 0 206 266 0 0 chr11 1543748 1543812 -147239660 + C-rich Low_complexity Low_complexity 1 64 0 236 212 26 62 chr11 1543837 1543950 -147239522 + (CCCGG)n Simple_repeat Simple_repeat 2 110 0 306 73 0 0 chr11 1544486 1544527 -147238945 + (CA)n Simple_repeat Simple_repeat 1 41 0 191 295 39 26 chr11 1545799 1545877 -147237595 + L3 LINE CR1 1279 1357 -220 256 275 75 0 chr11 1546038 1546158 -147237314 + MLT1J2 LTR MaLR 34 162 -288 1792 163 3 7 chr11 1546455 1546756 -147236716 + AluJb SINE Alu 13 312 0 233 304 48 32 chr11 1546939 1547064 -147236408 - MIR SINE MIR -77 185 59 416 323 38 0 chr11 1547767 1547925 -147235547 - MIR SINE MIR -14 248 85 380 250 0 0 chr11 1549408 1549492 -147233980 - MIR SINE MIR -57 151 68 181 237 51 0 chr11 1549950 1550009 -147233463 + MIR SINE MIR 86 147 -61 247 215 0 32 chr11 1550209 1550302 -147233170 + CT-rich Low_complexity Low_complexity 3 92 0 459 95 0 0 chr11 1550823 1550897 -147232575 + MIR SINE MIR 66 139 -123 2263 92 10 0 chr11 1551162 1551457 -147232015 - AluSg SINE Alu -12 298 1 521 308 66 31 chr11 1551648 1551875 -147231597 - MIR SINE MIR -7 255 21 1858 142 6 31 chr11 1552047 1552364 -147231108 - AluSx SINE Alu -3 309 1 1522 177 65 31 chr11 1553218 1553512 -147229960 + AluJo SINE Alu 1 304 -8 234 255 0 0 chr11 1553801 1553848 -147229624 + (CA)n Simple_repeat Simple_repeat 1 47 0 372 241 25 0 chr11 1554146 1554225 -147229247 - MER81 DNA DNA -17 97 17 254 300 348 12 chr11 1555681 1556504 -147226968 + L2 LINE L2 1692 2790 -524 245 329 37 0 chr11 1556601 1556683 -147226789 + L2 LINE L2 3224 3308 -5 363 326 105 44 chr11 1556856 1557200 -147226272 + L2 LINE L2 2815 3179 -93 2903 159 24 39 chr11 1557927 1558051 -147225421 - MER39B LTR ERV1 -39 614 490 2519 35 3 7 chr11 1558051 1558361 -147225111 + AluY SINE Alu 1 309 -2 2903 159 24 39 chr11 1558361 1558859 -147224613 - MER39B LTR ERV1 -163 490 1 342 254 8 31 chr11 1559488 1559618 -147223854 + C-rich Low_complexity Low_complexity 1 127 0 292 236 100 18 chr11 1562126 1562236 -147221236 + MIR SINE MIR 117 235 -27 303 251 228 40 chr11 1562564 1562990 -147220482 - L2 LINE L2 -735 2579 2074 1610 53 18 0 chr11 1563079 1563306 -147220166 - L1PA5 LINE L1 -253 5901 5671 187 223 97 39 chr11 1563568 1563671 -147219801 - L2 LINE L2 -1688 1626 1518 6772 45 6 0 chr11 1563707 1564523 -147218949 + L1PA6 LINE L1 5334 6154 0 1464 205 166 27 chr11 1564878 1565288 -147218184 - MLT1C LTR MaLR 0 467 1 209 348 211 3 chr11 1568265 1568564 -147214908 - L2 LINE L2 -670 2644 2284 211 243 27 40 chr11 1571717 1571791 -147211681 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1572908 1572953 -147210519 + (TG)n Simple_repeat Simple_repeat 1 45 0 1538 150 58 0 chr11 1576365 1576625 -147206847 - AluJb SINE Alu -21 291 17 350 256 87 23 chr11 1576705 1576877 -147206595 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1577261 1577434 -147206038 + MIR SINE MIR 27 221 -41 2349 48 0 32 chr11 1578587 1578897 -147204575 + AluY SINE Alu 1 300 -11 281 156 47 55 chr11 1580217 1580345 -147203127 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2286 76 0 20 chr11 1583107 1583408 -147200064 + AluSc SINE Alu 1 295 -14 1918 183 40 0 chr11 1584082 1584405 -147199067 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1586998 1587038 -147196434 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 236 217 0 0 chr11 1587600 1587646 -147195826 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1588149 1588237 -147195235 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1590121 1590181 -147193291 - MIR SINE MIR -62 146 86 181 171 98 0 chr11 1590628 1590669 -147192803 - MIR SINE MIR -92 116 72 1888 144 0 20 chr11 1591847 1592145 -147191327 + AluJo SINE Alu 1 292 -20 668 204 0 29 chr11 1592735 1592872 -147190600 + FLAM_C SINE Alu 1 133 0 2323 64 43 0 chr11 1592882 1593163 -147190309 + AluY SINE Alu 3 295 -16 2286 92 0 78 chr11 1593237 1593572 -147189900 + AluSq SINE Alu 2 310 -3 1259 202 47 0 chr11 1593572 1593849 -147189623 + L1MB3 LINE L1 5819 6108 -75 309 211 44 22 chr11 1595418 1595508 -147187964 + L1MB3 LINE L1 6090 6181 -2 1851 171 3 3 chr11 1595877 1596206 -147187266 + AluSx SINE Alu 9 337 0 422 232 84 80 chr11 1596362 1596599 -147186873 + MLT1D LTR MaLR 8 245 -260 234 278 0 0 chr11 1596970 1597024 -147186448 - MIR SINE MIR -113 149 96 210 71 0 0 chr11 1597122 1597150 -147186322 + (GGCTG)n Simple_repeat Simple_repeat 1 28 0 2263 108 3 0 chr11 1598494 1598789 -147184683 + AluSx SINE Alu 1 296 -16 352 250 23 0 chr11 1598800 1598888 -147184584 - L1ME2 LINE L1 -9 6155 6066 327 175 333 8 chr11 1603596 1603722 -147179750 + MER46A DNA MER2_type 1 167 -69 349 281 276 5 chr11 1609444 1609643 -147173829 - MIR SINE MIR -8 254 2 675 205 119 11 chr11 1609818 1610003 -147173469 - MER3 DNA MER1_type -4 205 1 1286 178 91 56 chr11 1611540 1611678 -147171794 - AluJo SINE Alu -6 296 164 1955 137 10 33 chr11 1611678 1611985 -147171487 - AluSx SINE Alu -12 300 1 1286 178 91 56 chr11 1611985 1612132 -147171340 - AluJo SINE Alu -138 164 1 301 234 16 70 chr11 1613425 1613553 -147169919 - L1MB8 LINE L1 -3 6175 6055 25 0 0 0 chr11 1614211 1614236 -147169236 + AT_rich Low_complexity Low_complexity 1 25 0 276 302 39 34 chr11 1617146 1617325 -147166147 + L1ME LINE L1 5556 5735 -386 451 300 137 13 chr11 1617346 1617573 -147165899 + MIR SINE MIR 5 259 -3 927 128 0 0 chr11 1618180 1618313 -147165159 - FLAM_C SINE Alu 0 133 1 238 158 0 53 chr11 1618533 1618590 -147164882 + AluSp SINE Alu 118 171 -132 313 308 8 53 chr11 1618603 1618736 -147164736 + L1ME LINE L1 5596 5722 -399 308 319 28 14 chr11 1619204 1619301 -147164171 + L1MCa LINE L1 2232 2333 -4093 2599 78 0 0 chr11 1619301 1619610 -147163862 + AluSc SINE Alu 1 309 0 308 319 28 14 chr11 1619610 1619656 -147163816 + L1MCa LINE L1 2333 2377 -4049 1422 184 141 3 chr11 1621699 1622004 -147161468 - MER7A DNA MER2_type -1 345 1 2224 58 68 4 chr11 1622033 1622311 -147161161 - AluY SINE Alu -15 296 1 1314 171 122 49 chr11 1622660 1623045 -147160427 - L1MA5 LINE L1 -5 6295 5883 638 247 97 0 chr11 1623616 1623770 -147159702 + FAM SINE Alu 1 169 -6 2513 57 6 22 chr11 1623824 1624140 -147159332 + AluY SINE Alu 1 311 0 189 206 0 0 chr11 1624794 1624828 -147158644 - MER5B DNA MER1_type -125 53 20 1791 150 61 10 chr11 1625479 1625772 -147157700 - AluJb SINE Alu -4 308 1 1513 210 93 0 chr11 1628238 1628572 -147154900 + MER47A DNA MER2_type 2 366 0 21 0 0 0 chr11 1628802 1628823 -147154649 + AT_rich Low_complexity Low_complexity 1 21 0 246 233 194 61 chr11 1628838 1629183 -147154289 + L1ME LINE L1 5256 5652 -469 1846 156 17 13 chr11 1629186 1629487 -147153985 + AluJo SINE Alu 1 302 -10 1801 174 3 0 chr11 1630277 1630564 -147152908 - AluJb SINE Alu -24 288 1 902 35 18 0 chr11 1630629 1630742 -147152730 - L1PA4 LINE L1 0 6155 6041 1890 105 81 48 chr11 1631110 1631239 -147152233 + AluSx SINE Alu 1 124 -188 212 0 36 0 chr11 1631239 1631267 -147152205 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 568 130 0 0 chr11 1631273 1631365 -147152107 + L1PA8 LINE L1 6076 6167 -5 1890 105 81 48 chr11 1631365 1631523 -147151949 + AluSx SINE Alu 128 305 -7 919 199 23 0 chr11 1631654 1631825 -147151647 + AluJo SINE Alu 120 294 -18 572 237 18 0 chr11 1631950 1632064 -147151408 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr11 1632775 1632798 -147150674 + AT_rich Low_complexity Low_complexity 1 23 0 503 304 154 27 chr11 1633675 1634189 -147149283 + L1MC4 LINE L1 7213 7791 -251 323 250 68 104 chr11 1634298 1634386 -147149086 + L1MC5 LINE L1 7733 7823 -138 710 214 8 0 chr11 1634386 1634517 -147148955 + FLAM_A SINE Alu 1 132 -1 323 250 68 104 chr11 1634517 1634620 -147148852 + L1MC5 LINE L1 7823 7917 -44 720 218 84 6 chr11 1635804 1635983 -147147489 + L1ME2 LINE L1 5972 6164 0 2205 96 4 0 chr11 1635990 1636298 -147147174 + AluSq SINE Alu 1 309 0 1838 148 25 3 chr11 1636701 1636985 -147146487 - AluJo SINE Alu -22 290 1 1816 152 7 29 chr11 1637449 1637759 -147145713 + AluSx SINE Alu 4 306 -6 960 115 0 55 chr11 1637783 1637948 -147145524 + FRAM SINE Alu 21 176 0 2326 85 7 0 chr11 1638054 1638349 -147145123 + AluSp SINE Alu 1 297 -16 236 189 151 0 chr11 1638709 1638762 -147144710 - L1ME LINE L1 -485 5636 5576 317 261 81 27 chr11 1639029 1639140 -147144332 - MIR SINE MIR -72 190 74 2240 106 3 0 chr11 1639248 1639550 -147143922 + AluSg SINE Alu 1 303 -7 238 209 209 0 chr11 1639678 1639745 -147143727 + L2 LINE L2 3232 3312 -1 814 198 0 32 chr11 1639866 1640023 -147143449 - FRAM SINE Alu -24 152 1 1470 134 20 35 chr11 1640261 1640515 -147142957 + AluSx SINE Alu 57 306 -6 908 178 0 46 chr11 1640519 1640693 -147142779 + FRAM SINE Alu 1 166 -10 2398 86 7 0 chr11 1640794 1641096 -147142376 + AluSp SINE Alu 1 304 -9 183 290 75 32 chr11 1641206 1641299 -147142173 + MIR SINE MIR 105 201 -61 2062 132 87 3 chr11 1641408 1641741 -147141731 - MER46B DNA MER2_type 0 236 1 812 161 111 5 chr11 1641995 1642202 -147141270 + L1MA8 LINE L1 6057 6289 -2 2164 129 0 0 chr11 1642592 1642903 -147140569 + AluSx SINE Alu 1 311 -1 2068 87 30 33 chr11 1643121 1643421 -147140051 - AluSq SINE Alu -12 301 3 609 177 0 71 chr11 1643806 1643947 -147139525 - FLAM_C SINE Alu -2 131 1 2287 79 3 7 chr11 1643974 1644277 -147139195 + AluSx SINE Alu 1 302 -10 295 309 32 16 chr11 1644292 1644415 -147139057 + L2 LINE L2 3180 3304 -9 341 272 258 14 chr11 1644809 1645026 -147138446 + L2 LINE L2 3026 3295 -18 495 256 34 59 chr11 1647144 1647343 -147136129 + MIR SINE MIR 37 234 -28 216 200 0 91 chr11 1648524 1648634 -147134838 + C-rich Low_complexity Low_complexity 3 102 0 40 49 0 0 chr11 1648649 1648710 -147134762 + GC_rich Low_complexity Low_complexity 1 61 0 587 151 0 0 chr11 1649980 1650066 -147133406 + AluJb SINE Alu 40 125 -187 1248 180 85 35 chr11 1650072 1650355 -147133117 + AluJb SINE Alu 2 298 -4 2433 39 3 10 chr11 1650355 1650661 -147132811 + AluY SINE Alu 1 304 -7 228 175 0 0 chr11 1651138 1651178 -147132294 + MLT1C LTR MaLR 74 113 -354 1438 161 12 24 chr11 1651179 1651433 -147132039 + AluJo SINE Alu 43 293 -19 204 256 0 0 chr11 1651434 1651477 -147131995 - MER5B DNA MER1_type -135 43 1 200 299 90 0 chr11 1651696 1651763 -147131709 + L2 LINE L2 3170 3242 -30 300 256 80 73 chr11 1652173 1652310 -147131162 + HAL1b LINE L1 1204 1341 -7 244 330 75 41 chr11 1653120 1653193 -147130279 - L1MC5 LINE L1 -283 7678 7609 2255 71 30 7 chr11 1653193 1653490 -147129982 - AluSp SINE Alu -9 304 1 244 330 75 41 chr11 1653490 1653761 -147129711 - L1MC5 LINE L1 -352 7609 7322 231 236 28 28 chr11 1653777 1653849 -147129623 + MER5A DNA MER1_type 29 100 -89 316 312 63 35 chr11 1653957 1654290 -147129182 - L1MC4 LINE L1 -673 7369 7032 1182 173 13 9 chr11 1654401 1654627 -147128845 - AluJo SINE Alu -1 311 85 305 195 5 0 chr11 1654628 1654688 -147128784 - L1MC4 LINE L1 -1032 7010 6856 695 281 57 24 chr11 1654718 1655084 -147128388 - L1MD2 LINE L1 -92 6267 5835 432 310 144 16 chr11 1655094 1655413 -147128059 - L1MC4a LINE L1 -945 6863 6504 2046 94 0 0 chr11 1655434 1655700 -147127772 + AluSx SINE Alu 1 266 -46 511 308 113 44 chr11 1655964 1656399 -147127073 + MLT1G LTR MaLR 56 549 0 25 0 0 0 chr11 1656441 1656466 -147127006 + AT_rich Low_complexity Low_complexity 1 25 0 310 303 49 43 chr11 1656489 1656651 -147126821 - L1MD2 LINE L1 -1963 5845 5683 359 299 98 40 chr11 1659674 1659848 -147123624 - L2 LINE L2 -839 2475 2292 280 289 67 19 chr11 1659866 1659970 -147123502 - L2 LINE L2 -925 2389 2281 2268 92 0 7 chr11 1661315 1661618 -147121854 + AluSg SINE Alu 1 301 -9 216 0 0 0 chr11 1661985 1662009 -147121463 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1768 119 83 4 chr11 1662120 1662397 -147121075 - AluSx SINE Alu -12 300 2 927 180 0 0 chr11 1662493 1662654 -147120818 + L1MA4 LINE L1 6134 6294 -6 2048 103 43 10 chr11 1662664 1662966 -147120506 + AluSx SINE Alu 1 312 0 2154 111 0 0 chr11 1664826 1665123 -147118349 + AluSc SINE Alu 1 297 -12 1591 214 38 3 chr11 1665693 1666062 -147117410 + L1MB3 LINE L1 5759 6140 -43 180 382 67 0 chr11 1667539 1667628 -147115844 + MIR SINE MIR 158 252 -10 2233 45 0 28 chr11 1667811 1668119 -147115353 + AluY SINE Alu 1 300 0 366 294 52 0 chr11 1668468 1668621 -147114851 + MER20 DNA MER1_type 57 217 -2 2048 99 0 0 chr11 1669365 1669638 -147113834 - AluSc SINE Alu 0 309 37 2222 77 11 0 chr11 1669647 1669932 -147113540 - AluSp SINE Alu -19 294 7 1762 101 4 19 chr11 1670055 1670312 -147113160 + AluSg SINE Alu 1 253 -57 270 176 0 0 chr11 1670405 1670456 -147113016 + AluSg SINE Alu 257 307 -1 2331 84 0 10 chr11 1672698 1673008 -147110464 - AluY SINE Alu -3 308 2 1429 197 24 7 chr11 1673103 1673398 -147110074 - AluJb SINE Alu -12 300 1 2303 82 3 3 chr11 1673847 1674153 -147109319 + AluSp SINE Alu 1 306 -7 215 299 39 13 chr11 1675380 1675457 -147108015 - MIR SINE MIR -166 96 18 2081 87 3 48 chr11 1675900 1676210 -147107262 + AluSg SINE Alu 1 296 -14 247 344 41 16 chr11 1676412 1676534 -147106938 - MIR3 SINE MIR -7 201 77 239 238 119 16 chr11 1678065 1678191 -147105281 - L1ME4a LINE L1 -9 6112 5974 1583 238 65 19 chr11 1678525 1679054 -147104418 + LTR26E LTR ERV1 1 622 0 243 103 0 0 chr11 1679868 1679907 -147103565 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1556 176 11 0 chr11 1679907 1680168 -147103304 - AluJb SINE Alu -36 276 13 277 295 124 30 chr11 1680171 1680376 -147103096 - L1M4 LINE L1 -2849 3297 3113 2360 80 0 0 chr11 1680376 1680676 -147102796 - AluSg SINE Alu -9 301 2 277 295 124 30 chr11 1680676 1680907 -147102565 - L1M4 LINE L1 -3033 3113 2820 1971 147 0 0 chr11 1680935 1681234 -147102238 - AluJo SINE Alu -13 299 1 2192 113 0 0 chr11 1681708 1682009 -147101463 - AluSx SINE Alu -6 306 6 2540 174 36 11 chr11 1682496 1682972 -147100500 + L1MA4 LINE L1 5810 6297 -3 8751 41 2 1 chr11 1683932 1684938 -147098534 + LTR13 LTR ERVK 1 1007 0 410 323 65 46 chr11 1687034 1687821 -147095651 + L1MEd LINE L1 939 1762 -4845 2652 169 27 4 chr11 1687987 1688466 -147095006 + L1MEd LINE L1 7 496 -5930 546 91 0 0 chr11 1688471 1688548 -147094924 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1987 112 0 0 chr11 1688548 1688825 -147094647 - AluSc SINE Alu -32 277 1 945 221 4 65 chr11 1688826 1689057 -147094415 + MER21B LTR ERV1 575 791 -72 1802 181 75 14 chr11 1689099 1689514 -147093958 + L1MC1 LINE L1 5889 6328 -5 841 305 98 82 chr11 1689520 1690248 -147093224 + L1MEd LINE L1 2769 3507 -2919 26 0 0 0 chr11 1690377 1690403 -147093069 + AT_rich Low_complexity Low_complexity 1 26 0 801 193 0 0 chr11 1690403 1690538 -147092934 - AluJo SINE Alu -177 135 1 201 200 20 0 chr11 1690610 1690660 -147092812 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2269 93 7 0 chr11 1690664 1690974 -147092498 - AluSx SINE Alu 0 312 1 2044 114 0 20 chr11 1690988 1691287 -147092185 - AluSc SINE Alu -16 293 1 2008 129 88 16 chr11 1691287 1691651 -147091821 - MSTC LTR MaLR -38 390 1 2405 257 45 14 chr11 1691742 1691938 -147091534 + L1MB5 LINE L1 5351 5539 -644 1781 176 0 7 chr11 1691938 1692239 -147091233 - AluJo SINE Alu -13 299 1 2405 257 45 14 chr11 1692239 1692264 -147091208 + L1MB5 LINE L1 5539 5562 -621 932 278 141 43 chr11 1692264 1692774 -147090698 + MER68 LTR ERV1 1 560 -2 2405 257 45 14 chr11 1692774 1693387 -147090085 + L1MB5 LINE L1 5562 5901 -282 382 102 0 0 chr11 1693411 1693470 -147090002 + L1MB2 LINE L1 6113 6171 0 413 245 93 16 chr11 1694785 1694953 -147088519 + MIR SINE MIR 8 184 -37 2247 161 68 12 chr11 1696432 1696841 -147086631 + Tigger2a DNA MER2_type 2 433 -1 379 263 177 7 chr11 1697744 1697949 -147085523 - MIR SINE MIR 0 262 23 696 150 0 9 chr11 1698883 1698996 -147084476 - AluY SINE Alu -16 295 184 1896 123 50 0 chr11 1700877 1701154 -147082318 - AluSg SINE Alu -19 291 1 2177 75 0 0 chr11 1701742 1702023 -147081449 - AluY SINE Alu -30 281 1 2496 57 0 0 chr11 1703455 1703756 -147079716 + AluY SINE Alu 1 301 -10 617 209 199 31 chr11 1704587 1704783 -147078689 + L1MB5 LINE L1 5928 6156 -18 1060 174 0 0 chr11 1704820 1704981 -147078491 - U1 snRNA snRNA -4 161 1 516 280 131 27 chr11 1705129 1705546 -147077926 + MER67B LTR ERV1 34 533 -128 978 176 0 0 chr11 1705546 1705742 -147077730 - FRAM SINE Alu 0 176 1 457 267 15 0 chr11 1705742 1705877 -147077595 + MER67B LTR ERV1 525 661 0 252 276 115 0 chr11 1708486 1708573 -147074899 + L1ME4a LINE L1 6022 6118 -3 210 321 94 19 chr11 1708725 1708831 -147074641 + MIR SINE MIR 124 237 -25 33 25 0 0 chr11 1708946 1708986 -147074486 + AT_rich Low_complexity Low_complexity 1 40 0 2253 72 3 0 chr11 1709665 1709993 -147073479 - AluSx SINE Alu 0 312 1 341 277 36 0 chr11 1710093 1710205 -147073267 + MER5A DNA MER1_type 36 151 -38 708 290 43 24 chr11 1711036 1711291 -147072181 + MIR SINE MIR 2 261 -1 2012 55 76 7 chr11 1711627 1711902 -147071570 - AluY SINE Alu -17 294 1 290 288 39 10 chr11 1712262 1712439 -147071033 - MIR SINE MIR -21 241 6 979 188 0 0 chr11 1714520 1714690 -147068782 + FRAM SINE Alu 1 166 -10 2367 90 0 0 chr11 1714741 1715051 -147068421 + AluSx SINE Alu 1 310 -2 850 158 0 0 chr11 1715535 1715668 -147067804 + AluSq/x SINE Alu 1 133 -179 811 118 77 29 chr11 1715872 1716042 -147067430 + MLT1C LTR MaLR 1 178 -289 836 175 7 13 chr11 1716042 1716223 -147067249 + FRAM SINE Alu 1 173 0 26 0 0 27 chr11 1716226 1716249 -147067223 + AT_rich Low_complexity Low_complexity 1 24 -12 2172 84 7 0 chr11 1716249 1716536 -147066936 - AluSp SINE Alu -24 289 1 26 0 0 27 chr11 1716536 1716549 -147066923 + AT_rich Low_complexity Low_complexity 24 36 0 1342 174 89 0 chr11 1716552 1716823 -147066649 + MLT1C LTR MaLR 170 388 -2 1338 215 95 31 chr11 1717357 1717436 -147066036 + MLT1C LTR MaLR 1 74 -393 1999 147 0 3 chr11 1717436 1717749 -147065723 - AluJb SINE Alu 0 312 1 1338 215 95 31 chr11 1717749 1718059 -147065413 + MLT1C LTR MaLR 74 415 -52 2027 116 0 38 chr11 1718117 1718437 -147065035 - AluSx SINE Alu -4 308 1 410 113 16 0 chr11 1719649 1719711 -147063761 + AluJb SINE Alu 167 229 -83 3518 79 2 4 chr11 1719714 1720183 -147063289 + THE1A-int LTR MaLR 1113 1580 0 1440 126 13 4 chr11 1720183 1720413 -147063059 + THE1A LTR MaLR 1 232 -123 5073 94 35 0 chr11 1720413 1721136 -147062336 - THE1A-int LTR MaLR -830 750 3 1012 70 0 0 chr11 1721137 1721265 -147062207 - THE1A LTR MaLR 0 355 228 683 66 0 0 chr11 1721265 1721356 -147062116 - AluSp/q SINE Alu -8 305 215 1350 132 21 13 chr11 1721356 1721591 -147061881 - THE1A LTR MaLR -118 237 1 4207 181 21 38 chr11 1721591 1721670 -147061802 - L1P LINE L1 -744 5402 5323 2049 118 7 0 chr11 1721670 1721958 -147061514 - AluSc SINE Alu -19 290 1 4207 181 21 38 chr11 1721958 1722674 -147060798 - L1P LINE L1 -823 5323 4597 1757 155 9 25 chr11 1722674 1722990 -147060482 - AluJb SINE Alu -1 311 1 4207 181 21 38 chr11 1722990 1723066 -147060406 - L1P LINE L1 -1549 4597 4521 2131 103 0 0 chr11 1723066 1723373 -147060099 + AluSp SINE Alu 1 307 0 4207 181 21 38 chr11 1723373 1723520 -147059952 - L1P LINE L1 -1625 4521 4398 186 43 0 0 chr11 1723522 1723545 -147059927 + (T)n Simple_repeat Simple_repeat 1 23 0 1030 169 34 0 chr11 1723582 1723759 -147059713 - AluSg/x SINE Alu -1 311 129 1666 68 0 0 chr11 1723759 1723964 -147059508 - AluSq SINE Alu -108 205 1 248 333 0 0 chr11 1724716 1724827 -147058645 - L1M4 LINE L1 -3600 2546 2436 765 234 234 0 chr11 1724837 1725058 -147058414 - MER82 DNA MER2_type -1 652 368 228 35 0 0 chr11 1725058 1725087 -147058385 + (TG)n Simple_repeat Simple_repeat 1 29 0 765 234 234 0 chr11 1725087 1725109 -147058363 - MER82 DNA MER2_type -285 368 352 762 185 31 25 chr11 1725112 1725274 -147058198 + FRAM SINE Alu 1 162 -14 2073 94 14 0 chr11 1725297 1725583 -147057889 + AluSp SINE Alu 1 290 -23 1591 163 61 3 chr11 1725591 1725885 -147057587 + AluSx SINE Alu 2 312 0 3174 214 22 27 chr11 1726012 1727045 -147056427 + L1P3 LINE L1 981 2000 -4461 6033 85 2 0 chr11 1727145 1728001 -147055471 - L1P LINE L1 -1542 4604 3747 2436 11 0 0 chr11 1728000 1728419 -147055053 + L1P1 LINE L1 5133 5551 -604 * 412 172 188 39 chr11 1729409 1729537 -147053935 - L2 LINE L2 0 3313 3167 395 209 17 52 chr11 1729821 1729936 -147053536 - L1MD3 LINE L1 -43 7952 7842 573 211 17 18 chr11 1729936 1730066 -147053406 - MER20 DNA MER1_type -57 162 48 435 289 106 83 chr11 1730658 1731120 -147052352 + L1MC/D LINE L1 4948 5431 -767 286 330 59 77 chr11 1731141 1731414 -147052058 - MLT1I LTR MaLR -13 396 129 2487 229 107 27 chr11 1731568 1731926 -147051546 - L1 LINE L1 -3739 3826 3498 366 91 0 0 chr11 1731926 1731981 -147051491 + (TG)n Simple_repeat Simple_repeat 2 56 0 2487 229 107 27 chr11 1731981 1732786 -147050686 - L1 LINE L1 -4067 3498 2582 1073 62 0 0 chr11 1732897 1733041 -147050431 + AluY SINE Alu 156 299 -12 271 188 39 47 chr11 1734404 1734532 -147048940 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2263 76 0 20 chr11 1737354 1737655 -147045817 + AluSc SINE Alu 1 295 -14 1892 183 40 0 chr11 1738330 1738653 -147044819 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1741246 1741286 -147042186 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 22 0 0 0 chr11 1741584 1741606 -147041866 + GC_rich Low_complexity Low_complexity 1 22 0 236 217 0 0 chr11 1741848 1741894 -147041578 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1742397 1742485 -147040987 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1744369 1744429 -147039043 - MIR SINE MIR -62 146 86 260 185 0 0 chr11 1745127 1745181 -147038291 - L2 LINE L2 -265 3048 2995 225 363 26 0 chr11 1745319 1745432 -147038040 - L2 LINE L2 -670 2644 2529 191 355 26 0 chr11 1745542 1745618 -147037854 - L2 LINE L2 -953 2361 2284 211 243 27 40 chr11 1748773 1748847 -147034625 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1749963 1750008 -147033464 + (TG)n Simple_repeat Simple_repeat 1 45 0 1547 149 58 0 chr11 1753420 1753681 -147029791 - AluJb SINE Alu -20 292 17 350 256 87 23 chr11 1753761 1753933 -147029539 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1754317 1754490 -147028982 + MIR SINE MIR 27 221 -41 1099 81 0 69 chr11 1755641 1755814 -147027658 + AluY SINE Alu 1 161 -150 256 198 10 10 chr11 1755829 1755925 -147027547 + (CA)n Simple_repeat Simple_repeat 2 97 0 239 333 21 0 chr11 1757323 1757419 -147026053 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1757557 1757846 -147025626 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1759045 1759174 -147024298 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1761187 1761274 -147022198 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1763357 1763412 -147020060 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1763702 1763768 -147019704 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1763807 1763844 -147019628 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1764159 1764203 -147019269 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1764293 1764343 -147019129 + GC_rich Low_complexity Low_complexity 1 50 0 376 354 112 29 chr11 1764841 1764932 -147018540 + HAL1 LINE L1 1004 1086 -1421 1498 177 75 17 chr11 1764932 1765226 -147018246 + AluJb SINE Alu 2 312 0 376 354 112 29 chr11 1765226 1765411 -147018061 + HAL1 LINE L1 1086 1303 -1204 398 318 41 72 chr11 1766578 1766662 -147016810 + L1ME4a LINE L1 1040 1125 -4996 764 186 0 0 chr11 1766662 1766786 -147016686 + FLAM_A SINE Alu 1 124 -9 398 318 41 72 chr11 1766786 1766802 -147016670 + L1ME4a LINE L1 1125 1140 -4981 1758 140 0 29 chr11 1766802 1767080 -147016392 + AluJo SINE Alu 19 288 -24 398 318 41 72 chr11 1767080 1767302 -147016170 + L1ME4a LINE L1 1140 6119 -2 196 354 13 0 chr11 1767738 1767817 -147015655 - MIR SINE MIR -84 124 45 202 259 37 0 chr11 1767926 1767980 -147015492 + GA-rich Low_complexity Low_complexity 1 56 0 1976 176 43 5 chr11 1768430 1768806 -147014666 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1769464 1769519 -147013953 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1770079 1770117 -147013355 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1771046 1771114 -147012358 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1773700 1774032 -147009440 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1774223 1774270 -147009202 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1774271 1774597 -147008875 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1774599 1774676 -147008796 - AluSp SINE Alu -181 132 56 674 150 33 0 chr11 1774677 1774797 -147008675 - MLT1A1 LTR MaLR -38 327 204 300 231 51 0 chr11 1774908 1774986 -147008486 + AluJ/FRAM SINE Alu 217 298 -4 2127 127 3 0 chr11 1774991 1775298 -147008174 + AluSp SINE Alu 2 309 -4 231 62 0 62 chr11 1775298 1775346 -147008126 - L1MC/D LINE L1 -478 5855 5811 262 305 169 17 chr11 1775373 1775668 -147007804 - L1MEd LINE L1 -4880 1239 900 2304 88 0 22 chr11 1775689 1776009 -147007463 - AluSq SINE Alu 0 313 1 227 277 72 0 chr11 1776131 1776214 -147007258 + L2 LINE L2 3225 3313 0 285 348 85 20 chr11 1776317 1776622 -147006850 - L1MEd LINE L1 -5581 538 214 240 195 11 46 chr11 1776631 1776718 -147006754 + CT-rich Low_complexity Low_complexity 3 86 0 943 183 9 163 chr11 1776841 1777190 -147006282 - MER82 DNA MER2_type -314 339 45 2244 97 0 25 chr11 1777299 1777618 -147005854 - AluSx SINE Alu -1 311 1 426 396 56 8 chr11 1777620 1777991 -147005481 - L1MEc LINE L1 -2946 3269 2100 1716 186 0 7 chr11 1778015 1778322 -147005150 + AluJb SINE Alu 1 305 -7 1707 119 43 61 chr11 1778358 1778703 -147004769 + THE1C LTR MaLR 1 339 -36 465 133 0 0 chr11 1778703 1778778 -147004694 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 263 313 0 30 chr11 1779693 1779792 -147003680 + CT-rich Low_complexity Low_complexity 4 99 0 210 250 9 18 chr11 1779792 1779904 -147003568 + C-rich Low_complexity Low_complexity 2 112 0 990 176 0 0 chr11 1780281 1780610 -147002862 + (ATG)n Simple_repeat Simple_repeat 1 329 0 383 146 0 0 chr11 1780610 1780665 -147002807 + (TGG)n Simple_repeat Simple_repeat 3 57 0 816 196 0 0 chr11 1780665 1780844 -147002628 + (ATG)n Simple_repeat Simple_repeat 1 179 0 187 294 59 0 chr11 1780949 1781000 -147002472 + L2 LINE L2 2653 2706 -608 304 246 100 9 chr11 1781662 1781772 -147001700 + MIR SINE MIR 31 150 -58 2877 89 91 0 chr11 1781899 1782316 -147001156 + L1PA13 LINE L1 5708 6162 -1 385 181 0 36 chr11 1782351 1782434 -147001038 - L1M3 LINE L1 -469 5714 5635 1097 110 7 0 chr11 1782585 1782740 -147000732 - AluSq SINE Alu -157 156 1 282 136 153 0 chr11 1782740 1782799 -147000673 - L1MA8 LINE L1 -185 6106 6039 245 167 0 0 chr11 1782800 1782854 -147000618 - L1M3 LINE L1 -537 5646 5593 933 72 8 0 chr11 1782895 1783020 -147000452 + AluSp/q SINE Alu 188 313 0 4915 155 38 21 chr11 1783025 1783205 -147000267 - L1MA8 LINE L1 -10 6281 6105 1954 109 38 0 chr11 1783205 1783498 -146999974 - AluSx SINE Alu -4 308 5 4915 155 38 21 chr11 1783498 1784481 -146998991 - L1MA8 LINE L1 -186 6105 5106 990 146 41 120 chr11 1784474 1784709 -146998763 - L1M3 LINE L1 -576 5607 5402 * 832 156 7 22 chr11 1784709 1784844 -146998628 - FLAM_C SINE Alu 0 133 1 990 146 41 120 chr11 1784844 1784924 -146998548 - L1M3 LINE L1 -781 5402 5317 1633 141 20 0 chr11 1785663 1785918 -146997554 - AluJo SINE Alu -35 277 18 213 218 18 0 chr11 1788236 1788291 -146995181 + (CAGCC)n Simple_repeat Simple_repeat 2 57 0 756 134 0 0 chr11 1791401 1791535 -146991937 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 977 134 6 0 chr11 1791550 1791722 -146991750 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 287 283 0 7 chr11 1793800 1793945 -146989527 + (CA)n Simple_repeat Simple_repeat 1 144 0 198 333 42 21 chr11 1794548 1794644 -146988828 + MIR SINE MIR 47 144 -64 904 224 97 21 chr11 1794820 1795212 -146988260 + MLT1C LTR MaLR 7 466 -1 464 293 67 67 chr11 1795889 1796264 -146987208 - MER113 DNA MER1_type? -83 438 64 660 264 42 10 chr11 1796975 1797186 -146986286 + MIR SINE MIR 42 261 -1 1523 150 24 53 chr11 1798568 1798671 -146984801 + MLT1B LTR MaLR 2 106 -284 995 9 0 0 chr11 1798671 1798802 -146984670 + L1PA5 LINE L1 6028 6158 0 1523 150 24 53 chr11 1798802 1799038 -146984434 + MLT1B LTR MaLR 106 332 -58 2334 94 7 0 chr11 1800431 1800739 -146982733 + AluSg SINE Alu 1 310 0 1694 163 34 3 chr11 1801428 1801722 -146981750 + AluJo SINE Alu 1 303 -9 913 223 35 1 chr11 1804316 1804654 -146978818 + MLT1B LTR MaLR 2 379 -11 244 276 134 39 chr11 1804913 1805040 -146978432 - MIR SINE MIR -103 159 21 229 301 11 21 chr11 1807978 1808071 -146975401 + G-rich Low_complexity Low_complexity 2 93 0 287 268 143 0 chr11 1808846 1808958 -146974514 - L3 LINE CR1 -108 1469 1342 245 316 22 22 chr11 1810767 1810906 -146972566 + L1MC5 LINE L1 5723 5861 -1947 771 111 0 0 chr11 1810926 1811034 -146972438 + AluSg/x SINE Alu 203 310 0 1177 272 68 53 chr11 1811057 1811730 -146971742 + L1MC5 LINE L1 6694 7376 -585 2222 113 7 0 chr11 1812028 1812338 -146971134 + AluSx SINE Alu 1 312 0 287 252 10 29 chr11 1812350 1812453 -146971019 + L1MC5 LINE L1 7701 7801 -160 296 206 17 39 chr11 1812604 1812784 -146970688 + GA-rich Low_complexity Low_complexity 3 178 0 900 205 65 0 chr11 1813526 1813741 -146969731 + L1MC2 LINE L1 6106 6334 -10 415 360 79 9 chr11 1813742 1813970 -146969502 + L1MCa LINE L1 1402 1645 -4781 1468 51 6 0 chr11 1813976 1814152 -146969320 + AluSp SINE Alu 1 177 -136 568 40 0 0 chr11 1814152 1814227 -146969245 + AluSp SINE Alu 228 302 -11 283 191 103 0 chr11 1814554 1814622 -146968850 + MIR SINE MIR 67 141 -121 2386 99 0 0 chr11 1815152 1815464 -146968008 - AluSx SINE Alu 0 312 1 320 308 50 33 chr11 1816811 1816931 -146966541 + MIR3 SINE MIR 58 179 -29 484 276 62 50 chr11 1819466 1819824 -146963648 + MER90 LTR ERV1 227 588 -26 198 0 0 0 chr11 1820271 1820293 -146963179 + (CAGC)n Simple_repeat Simple_repeat 3 24 0 2243 98 3 0 chr11 1821983 1822279 -146961193 - AluSp SINE Alu -16 297 1 1824 115 51 10 chr11 1822289 1822585 -146960887 - AluSx SINE Alu -2 310 3 269 133 0 0 chr11 1823703 1823748 -146959724 + MIR SINE MIR 113 157 -105 496 134 41 21 chr11 1823774 1823871 -146959601 + MER4A LTR ERV1 1 99 -565 1628 125 36 20 chr11 1823871 1824208 -146959264 + MER4A LTR ERV1 262 662 -2 3508 132 173 140 chr11 1824215 1825605 -146957867 + MER4A-int LTR ERV1 1 1435 -5163 193 279 54 78 chr11 1827552 1827681 -146955791 + L2 LINE L2 3123 3248 -24 399 254 78 14 chr11 1828775 1828917 -146954555 + MLT1D LTR MaLR 1 151 -354 188 294 71 12 chr11 1829480 1829565 -146953907 + L2 LINE L2 3100 3189 -83 593 325 41 26 chr11 1830074 1830415 -146953057 - L1MB7 LINE L1 -195 5989 5644 386 174 45 39 chr11 1830536 1830691 -146952781 + (CCCTG)n Simple_repeat Simple_repeat 5 160 0 214 257 29 57 chr11 1831081 1831151 -146952321 + MIR SINE MIR 82 149 -59 216 228 52 57 chr11 1831348 1831452 -146952020 + MIR SINE MIR 25 102 -106 2181 102 0 19 chr11 1831452 1831767 -146951705 + AluSx SINE Alu 1 309 -3 216 228 52 57 chr11 1831767 1831790 -146951682 + MIR SINE MIR 102 124 -84 265 302 125 0 chr11 1833418 1833514 -146949958 - L3 LINE CR1 -489 1088 981 1045 181 0 11 chr11 1834578 1834760 -146948712 - AluJo SINE Alu -132 180 1 2145 122 0 0 chr11 1834794 1835089 -146948383 + AluSx SINE Alu 1 295 -17 1877 113 11 11 chr11 1835090 1835364 -146948108 + AluY SINE Alu 2 275 -36 915 100 0 0 chr11 1835364 1835494 -146947978 + AluY SINE Alu 173 302 -9 2396 146 15 34 chr11 1835671 1835701 -146947771 - MER57A LTR ERV1 0 403 374 186 71 0 0 chr11 1835701 1835729 -146947743 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 110 7 11 chr11 1835733 1836014 -146947458 - AluSq SINE Alu -33 280 1 2396 146 15 34 chr11 1836014 1836389 -146947083 - MER57A LTR ERV1 -32 371 1 2238 99 3 6 chr11 1837183 1837497 -146945975 + AluSp SINE Alu 1 313 0 2088 97 3 14 chr11 1837678 1837966 -146945506 + AluSp SINE Alu 1 285 -28 228 67 0 0 chr11 1837966 1837996 -146945476 + (TA)n Simple_repeat Simple_repeat 2 31 0 2098 115 3 13 chr11 1838071 1838376 -146945096 - AluSq SINE Alu -11 302 1 507 65 0 13 chr11 1838376 1838453 -146945019 - MER4E LTR ERV1 -676 90 15 302 225 0 0 chr11 1839415 1839486 -146943986 - MER81 DNA DNA -6 108 38 332 253 75 71 chr11 1839509 1839784 -146943688 - MLT1C LTR MaLR -12 378 110 1814 147 0 14 chr11 1839799 1839961 -146943511 - AluJb SINE Alu -19 293 135 2305 108 0 0 chr11 1839961 1840266 -146943206 - AluSq SINE Alu -8 305 1 1814 147 0 14 chr11 1840266 1840396 -146943076 - AluJb SINE Alu -177 135 5 2122 121 0 10 chr11 1840547 1840853 -146942619 + AluSq SINE Alu 1 303 -10 2344 68 7 0 chr11 1841376 1841672 -146941800 - AluSc SINE Alu -11 298 1 1288 160 88 40 chr11 1841714 1841964 -146941508 + AluJb SINE Alu 39 300 -12 2146 102 0 7 chr11 1841964 1842251 -146941221 + AluSx SINE Alu 1 287 -25 244 0 0 0 chr11 1842251 1842278 -146941194 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 1111 224 154 16 chr11 1842293 1842677 -146940795 - L1MC4 LINE L1 -444 7598 7162 6127 77 48 6 chr11 1842852 1843779 -146939693 + MER4A-int LTR ERV1 1479 2450 -4148 1991 102 4 4 chr11 1843779 1844054 -146939418 + AluSg SINE Alu 19 293 -17 6127 77 48 6 chr11 1844054 1844102 -146939370 + MER4A-int LTR ERV1 2450 2495 -4103 1300 152 84 0 chr11 1844102 1844339 -146939133 - LTR8 LTR ERV1 -434 257 1 3539 133 83 52 chr11 1844342 1844979 -146938493 + MER4A-int LTR ERV1 2741 3416 -3182 2419 61 0 13 chr11 1844979 1845290 -146938182 - AluY SINE Alu -4 307 1 3539 133 83 52 chr11 1845290 1845570 -146937902 + MER4A-int LTR ERV1 3416 3686 -2912 * 16402 93 47 20 chr11 1845563 1846964 -146936508 + MER4A-int LTR ERV1 3836 5198 -1400 2394 88 0 0 chr11 1846964 1847272 -146936200 + AluSx SINE Alu 2 309 -3 16402 93 47 20 chr11 1847272 1848561 -146934911 + MER4A-int LTR ERV1 5198 6598 0 531 131 20 20 chr11 1848562 1848661 -146934811 + MER4A LTR ERV1 1 99 -565 1855 113 6 57 chr11 1848661 1848966 -146934506 + MER4A LTR ERV1 262 606 -58 2192 100 10 0 chr11 1848966 1849265 -146934207 - AluSx SINE Alu -10 302 1 1855 113 6 57 chr11 1849265 1849322 -146934150 + MER4A LTR ERV1 606 664 0 2142 116 0 3 chr11 1849407 1849708 -146933764 - AluSq SINE Alu -13 300 1 531 309 17 6 chr11 1850281 1850462 -146933010 + MER53 DNA DNA 1 183 -6 2239 80 17 3 chr11 1851451 1851750 -146931722 - AluSq SINE Alu -10 303 1 304 204 68 0 chr11 1851750 1851838 -146931634 + MER69 DNA AcHobo 2361 2454 -72 592 228 62 11 chr11 1852107 1852341 -146931131 + MLT1C LTR MaLR 72 373 -17 1132 265 73 0 chr11 1853655 1853968 -146929504 + MER58B DNA MER1_type 3 338 -3 285 307 39 39 chr11 1854139 1854266 -146929206 - MIR SINE MIR -33 229 103 631 236 56 15 chr11 1854453 1854648 -146928824 - MIR SINE MIR -45 217 15 194 239 65 76 chr11 1854841 1854933 -146928539 + L2 LINE L2 2883 2973 -299 414 57 0 0 chr11 1855185 1855238 -146928234 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1101 216 17 0 chr11 1855652 1855912 -146927560 + L1M4 LINE L1 5207 5470 -704 1276 86 0 56 chr11 1855912 1855937 -146927535 + AluY SINE Alu 118 143 -168 2366 41 3 7 chr11 1855937 1856232 -146927240 + AluY SINE Alu 17 310 -1 1276 86 0 56 chr11 1856232 1856403 -146927069 + AluY SINE Alu 143 303 -8 1170 179 20 99 chr11 1856407 1856709 -146926763 + L1M4 LINE L1 5479 5756 -418 423 261 131 8 chr11 1858991 1859121 -146924351 - MIR SINE MIR -100 162 17 187 262 0 0 chr11 1860539 1860581 -146922891 - MIR SINE MIR -63 145 104 217 325 25 0 chr11 1861020 1861100 -146922372 - MIR SINE MIR -119 143 62 830 145 6 23 chr11 1861704 1862014 -146921458 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 196 318 66 60 chr11 1863727 1863878 -146919594 + MIR SINE MIR 77 228 -34 215 160 80 0 chr11 1864762 1864812 -146918660 - L2 LINE L2 -191 3081 3028 186 293 121 32 chr11 1864914 1865071 -146918401 - L2 LINE L2 -168 3104 2934 504 315 63 10 chr11 1866745 1866965 -146916507 + MIR SINE MIR 1 234 -28 524 281 65 0 chr11 1869559 1869712 -146913760 - MLT1C LTR MaLR 0 467 305 371 234 32 11 chr11 1870476 1870570 -146912902 - MIR SINE MIR -72 190 95 194 280 32 11 chr11 1872936 1873029 -146910443 - L2 LINE L2 -182 3090 2996 2428 152 67 0 chr11 1873330 1873731 -146909741 - MSTA LTR MaLR 0 428 1 2198 75 0 7 chr11 1873990 1874283 -146909189 - AluY SINE Alu -20 291 1 1144 218 36 88 chr11 1874728 1875113 -146908359 + MLT1A1 LTR MaLR 1 365 0 181 274 78 0 chr11 1875137 1875188 -146908284 - L3 LINE CR1 -12 1565 1511 272 182 55 0 chr11 1875264 1875319 -146908153 - MER117 DNA MER1_type -82 115 58 377 382 66 5 chr11 1875360 1875572 -146907900 - L3 LINE CR1 -374 1203 979 201 331 60 8 chr11 1875827 1875949 -146907523 + MIR SINE MIR 18 150 -69 1574 145 3 74 chr11 1876411 1876735 -146906737 + AluJb SINE Alu 6 306 -6 2291 65 14 0 chr11 1877066 1877357 -146906115 - AluSx SINE Alu -17 295 1 3257 227 17 26 chr11 1877528 1878468 -146905004 - L1M3 LINE L1 -704 5479 4547 3622 141 16 18 chr11 1878552 1879182 -146904290 + L1PA16 LINE L1 5460 6088 -78 398 213 0 0 chr11 1879447 1879527 -146903945 + L1PA16 LINE L1 6079 6158 -8 1091 77 6 16 chr11 1879553 1879775 -146903697 + L1HS LINE L1 5988 6180 0 313 209 58 23 chr11 1879842 1879928 -146903544 - MLT1I LTR MaLR -40 369 281 1174 228 41 59 chr11 1880091 1880360 -146903112 + MLT1A2 LTR MaLR 1 264 -110 2290 109 124 16 chr11 1880360 1880746 -146902726 + MSTA LTR MaLR 1 428 0 1174 228 41 59 chr11 1880746 1880814 -146902658 + MLT1A2 LTR MaLR 264 332 -42 1188 152 0 15 chr11 1880856 1881054 -146902418 - AluJo SINE Alu -37 275 81 2121 128 0 0 chr11 1881107 1881404 -146902068 - AluSx SINE Alu -15 297 1 528 292 87 5 chr11 1881431 1881616 -146901856 - MER3 DNA MER1_type 0 209 10 784 213 96 0 chr11 1882121 1882309 -146901163 + MSTB1 LTR MaLR 6 211 -246 1419 166 7 50 chr11 1882324 1882626 -146900846 + AluJo SINE Alu 24 312 0 883 174 63 19 chr11 1882640 1882847 -146900625 + MSTB1 LTR MaLR 217 432 0 1631 209 29 24 chr11 1883754 1884132 -146899340 + Ricksha_c DNA DNA 70 449 -1597 5026 155 34 19 chr11 1884309 1885204 -146898268 + Ricksha_c DNA DNA 454 1361 -685 2730 62 6 3 chr11 1885207 1885561 -146897911 + THE1A LTR MaLR 1 355 0 3132 161 34 58 chr11 1885561 1885925 -146897547 + Ricksha_c DNA DNA 1353 1724 -1522 1887 149 0 10 chr11 1885925 1886221 -146897251 - AluSx SINE Alu -19 293 1 3132 161 34 58 chr11 1886221 1886405 -146897067 + Ricksha_c DNA DNA 1724 1883 -1363 1821 132 39 0 chr11 1886405 1886686 -146896786 + AluSx SINE Alu 1 292 -20 3132 161 34 58 chr11 1886686 1886839 -146896633 + Ricksha_c DNA DNA 1883 2038 0 4925 220 128 20 chr11 1886841 1887966 -146895506 - L1ME1 LINE L1 -21 6145 5142 219 69 0 0 chr11 1887966 1887995 -146895477 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4925 220 128 20 chr11 1887995 1889089 -146894383 - L1ME1 LINE L1 -1024 5142 3694 216 270 283 4 chr11 1889224 1889396 -146894076 - MIR SINE MIR -21 187 16 634 309 104 24 chr11 1889587 1890136 -146893336 + L2 LINE L2 2714 3299 -14 186 225 25 0 chr11 1890466 1890506 -146892966 + L2 LINE L2 3211 3251 -21 410 264 71 14 chr11 1890634 1890774 -146892698 + MIR SINE MIR 96 243 -19 233 255 10 0 chr11 1890807 1890905 -146892567 + (ATGGTG)n Simple_repeat Simple_repeat 6 104 0 * 865 162 6 6 chr11 1890890 1891069 -146892403 + (ATG)n Simple_repeat Simple_repeat 1 179 0 785 189 0 6 chr11 1891113 1891293 -146892179 + (ATG)n Simple_repeat Simple_repeat 1 179 0 519 189 13 26 chr11 1891306 1891459 -146892013 + (ATGGTG)n Simple_repeat Simple_repeat 2 152 0 2048 200 51 25 chr11 1891599 1892089 -146891383 - Charlie1b DNA MER1_type -4 519 17 2448 59 0 0 chr11 1892146 1892449 -146891023 + AluSx SINE Alu 1 303 -9 1589 188 27 60 chr11 1893336 1893782 -146889690 + MLT1C LTR MaLR 37 467 0 180 103 29 59 chr11 1895282 1895350 -146888122 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 325 325 65 56 chr11 1895710 1895941 -146887531 + MIR SINE MIR 21 253 -9 240 233 0 111 chr11 1896233 1896297 -146887175 + MIR SINE MIR 117 170 -92 2330 91 0 0 chr11 1896297 1896605 -146886867 + AluSg SINE Alu 1 308 -2 240 233 0 111 chr11 1896605 1896630 -146886842 + MIR SINE MIR 170 196 -66 436 276 17 17 chr11 1896947 1897088 -146886384 + MIR SINE MIR 104 243 -19 678 259 38 28 chr11 1897252 1897464 -146886008 - MER20 DNA MER1_type 0 219 6 282 333 16 40 chr11 1897655 1897781 -146885691 - MIR SINE MIR -51 211 89 228 367 28 0 chr11 1897893 1898002 -146885470 - MIR SINE MIR -102 160 49 25 0 0 0 chr11 1900000 1900025 -146883447 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 1900058 1900092 -146883380 + GC_rich Low_complexity Low_complexity 1 34 0 383 312 75 48 chr11 1902890 1903488 -146879984 + L2 LINE L2 2451 3073 -240 191 274 14 68 chr11 1905347 1905420 -146878052 + MIR3 SINE MIR 99 167 -41 248 217 50 0 chr11 1908335 1908395 -146875077 + MIR SINE MIR 82 144 -118 13294 78 3 22 chr11 2009584 2011334 -146772138 - L1P3 LINE L1 -4738 1723 8 358 179 60 12 chr11 2011341 2011425 -146772047 - MLT1B LTR MaLR -210 180 93 2367 34 41 0 chr11 2012091 2012385 -146771087 - AluY SINE Alu -5 306 1 40 21 0 0 chr11 2012390 2012437 -146771035 + AT_rich Low_complexity Low_complexity 1 47 0 259 268 63 39 chr11 2013193 2013320 -146770152 - HERVL LTR ERVL -3194 2460 2331 271 293 47 67 chr11 2014652 2014802 -146768670 + MIR SINE MIR 70 216 -46 1532 181 57 89 chr11 2015310 2015511 -146767961 + MER57A LTR ERV1 13 196 -207 1953 129 10 0 chr11 2015511 2015806 -146767666 + AluSx SINE Alu 1 298 -14 1532 181 57 89 chr11 2015806 2016008 -146767464 + MER57A LTR ERV1 196 403 0 206 289 36 12 chr11 2016013 2016096 -146767376 - MIR SINE MIR -130 132 48 2029 116 34 0 chr11 2016152 2016445 -146767027 - AluSx SINE Alu -9 303 1 253 310 177 0 chr11 2018555 2018668 -146764804 - MIR SINE MIR -51 211 79 1068 170 28 161 chr11 2019291 2019721 -146763751 + MER93b LTR ERV1 1 373 0 4903 86 7 18 chr11 2019763 2020316 -146763156 - L1PA11 LINE L1 -128 6046 5500 1972 91 62 0 chr11 2020316 2020592 -146762880 - AluSg SINE Alu -17 293 1 4903 86 7 18 chr11 2020592 2020712 -146762760 - L1PA11 LINE L1 -674 5500 5380 394 240 39 0 chr11 2020798 2020902 -146762570 + MER5A DNA MER1_type 76 183 -6 241 174 58 116 chr11 2021411 2021497 -146761975 + LTR48 LTR ERV1 703 783 -4 765 184 23 21 chr11 2021906 2022108 -146761364 + L1MA8 LINE L1 5966 6181 -124 188 303 28 46 chr11 2022371 2022480 -146760992 + MIR SINE MIR 35 141 -67 378 289 16 31 chr11 2022548 2022676 -146760796 - L2 LINE L2 -10 3262 3137 189 0 0 0 chr11 2022893 2022914 -146760558 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 322 319 89 32 chr11 2022914 2023071 -146760401 + MIR SINE MIR 49 214 -48 3522 105 8 12 chr11 2023642 2024157 -146759315 + LTR10D LTR ERV1 1 513 0 1981 138 3 0 chr11 2025040 2025345 -146758127 + AluSx SINE Alu 1 306 -6 302 289 26 46 chr11 2025852 2026004 -146757468 - MLT2F LTR ERVL -5 658 510 1206 258 141 37 chr11 2026022 2026473 -146756999 + MLT1E LTR MaLR 23 530 -63 2117 117 0 0 chr11 2026473 2026771 -146756701 - AluSx SINE Alu -14 298 1 1206 258 141 37 chr11 2026771 2026808 -146756664 + MLT1E LTR MaLR 530 562 -31 2312 84 0 3 chr11 2026858 2027168 -146756304 - AluY SINE Alu -2 309 1 2887 157 10 29 chr11 2027473 2027996 -146755476 - L1MA8 LINE L1 -159 6132 5620 2324 108 129 5 chr11 2028194 2028573 -146754899 - MSTA LTR MaLR -2 426 1 232 372 0 13 chr11 2028867 2028945 -146754527 + MIR3 SINE MIR 89 165 -43 435 139 13 0 chr11 2029084 2029163 -146754309 - MADE1 DNA Mariner 0 80 1 258 263 92 20 chr11 2031075 2031227 -146752245 - L1ME3 LINE L1 -91 6071 5909 1425 196 0 27 chr11 2032745 2033046 -146750426 + AluJb SINE Alu 1 293 -19 261 296 65 54 chr11 2034878 2035075 -146748397 - MIR SINE MIR -44 218 16 1410 154 32 0 chr11 2036814 2037035 -146746437 + MER30 DNA MER1_type 1 228 -2 578 280 118 26 chr11 2037524 2037828 -146745644 + L1ME2 LINE L1 5811 6142 -22 213 209 0 0 chr11 2037949 2037992 -146745480 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 493 282 99 41 chr11 2038355 2038699 -146744773 + L1ME1 LINE L1 5762 6125 -41 23 33 0 0 chr11 2038897 2038927 -146744545 + AT_rich Low_complexity Low_complexity 1 30 0 1508 165 15 4 chr11 2040589 2040862 -146742610 - AluJo SINE Alu -22 290 15 240 207 35 0 chr11 2041038 2041096 -146742376 + G-rich Low_complexity Low_complexity 5 64 0 231 114 0 0 chr11 2041105 2041140 -146742332 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 572 211 26 0 chr11 2041503 2041617 -146741855 + AluJo SINE Alu 90 206 -106 3370 203 85 34 chr11 2041641 2043382 -146740090 + L1MA8 LINE L1 4474 6291 0 1781 138 0 4 chr11 2043513 2043781 -146739691 - AluSx SINE Alu -45 267 1 2286 98 0 7 chr11 2044227 2044524 -146738948 - AluSx SINE Alu -13 299 5 28 0 0 0 chr11 2045524 2045552 -146737920 + AT_rich Low_complexity Low_complexity 1 28 0 1771 187 3 16 chr11 2045962 2046277 -146737195 - AluJo SINE Alu -1 311 1 3536 71 0 0 chr11 2046786 2047224 -146736248 - LTR21B LTR ERV1 0 438 1 1806 243 19 63 chr11 2047224 2047846 -146735626 - HERVFH21 LTR ERV1 0 6529 5935 20686 137 30 21 chr11 2047847 2051959 -146731513 - HERVFH21 LTR ERV1 -1791 4738 539 1794 200 60 25 chr11 2051953 2052498 -146730974 - HERVFH21 LTR ERV1 -5951 578 1 * 3478 58 11 0 chr11 2052499 2052932 -146730540 - LTR21B LTR ERV1 0 438 1 226 310 58 7 chr11 2055945 2056100 -146727372 + L1M4c LINE L1 1951 2113 -4917 764 261 67 71 chr11 2056135 2056386 -146727086 + L1M4c LINE L1 2013 2264 -4842 1790 181 0 10 chr11 2056386 2056678 -146726794 + AluJb SINE Alu 1 289 -23 764 261 67 71 chr11 2056678 2058148 -146725324 + L1M4c LINE L1 2264 3837 -3269 987 275 22 16 chr11 2058159 2058479 -146724993 + L1 LINE L1 4519 4840 -1306 237 363 6 0 chr11 2058512 2058669 -146724803 + L1M3 LINE L1 1684 1841 -5009 * 400 248 14 35 chr11 2058648 2058789 -146724683 + L1M3 LINE L1 2464 2601 -4248 567 208 32 8 chr11 2058796 2058921 -146724551 + FLAM_C SINE Alu 6 133 -10 897 265 123 33 chr11 2059115 2060107 -146723365 + L1M3 LINE L1 2493 3569 -3279 1847 230 111 36 chr11 2060152 2060587 -146722885 + L1M3 LINE L1 5246 5647 -1226 2594 51 0 22 chr11 2060587 2060902 -146722570 + AluY SINE Alu 1 308 -3 1847 230 111 36 chr11 2060902 2061408 -146722064 + L1M3 LINE L1 5647 6311 -562 1753 170 0 0 chr11 2061408 2061691 -146721781 + AluJb SINE Alu 15 297 -15 1847 230 111 36 chr11 2061691 2061918 -146721554 + L1M3 LINE L1 6311 6520 -353 2188 91 7 21 chr11 2062402 2062712 -146720760 + AluSp SINE Alu 2 307 0 269 271 21 21 chr11 2062834 2062930 -146720542 + L1MA9 LINE L1 3 98 -5857 485 275 8 0 chr11 2062940 2063060 -146720412 + FLAM_C SINE Alu 4 124 -19 259 297 0 0 chr11 2063060 2063124 -146720348 + L1MA9 LINE L1 92 155 -5800 * 1735 264 44 15 chr11 2063121 2063709 -146719763 + L1MA9 LINE L1 4463 5067 -967 310 240 53 0 chr11 2063772 2063847 -146719625 + MADE1 DNA Mariner 1 79 -1 2829 228 44 22 chr11 2063848 2064624 -146718848 + L1MA9 LINE L1 5378 6170 -30 434 165 1 3 chr11 2064674 2064780 -146718692 + L1MA4 LINE L1 5745 5849 -314 226 143 54 0 chr11 2064812 2064868 -146718604 - L1MCa LINE L1 -4362 2064 2006 254 364 0 0 chr11 2066680 2066779 -146716693 - MER5A DNA MER1_type -80 109 11 500 254 113 24 chr11 2066935 2067148 -146716324 + L1MC4 LINE L1 7278 7509 -533 1995 138 0 7 chr11 2067355 2067652 -146715820 - AluSx SINE Alu -16 296 2 246 300 100 27 chr11 2068631 2068781 -146714691 + MER5B DNA MER1_type 17 177 -1 1162 78 203 5 chr11 2070882 2071074 -146712398 + MER30 DNA MER1_type 1 230 0 2446 59 0 0 chr11 2072647 2072934 -146710538 + AluSx SINE Alu 1 287 -25 1179 280 19 24 chr11 2072938 2073310 -146710162 + MER93a LTR ERV1 7 376 -26 28 0 0 0 chr11 2073496 2073524 -146709948 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 2074048 2074072 -146709400 + AT_rich Low_complexity Low_complexity 1 24 0 819 263 103 0 chr11 2074196 2074477 -146708995 - MER33 DNA MER1_type -14 310 1 1368 234 119 66 chr11 2075022 2075384 -146708088 - MLT1H LTR MaLR 0 549 151 2640 98 0 3 chr11 2075384 2075740 -146707732 + THE1A LTR MaLR 1 355 0 1368 234 119 66 chr11 2075740 2075891 -146707581 - MLT1H LTR MaLR -398 151 9 237 269 37 37 chr11 2075935 2076043 -146707429 - MIR SINE MIR -97 111 4 413 269 46 29 chr11 2076576 2076751 -146706721 + MER5B DNA MER1_type 1 178 0 646 101 37 9 chr11 2076756 2076865 -146706607 - L1PA13 LINE L1 0 6163 6052 232 306 14 0 chr11 2076865 2076937 -146706535 + L2 LINE L2 3232 3304 -9 564 296 11 11 chr11 2077766 2077945 -146705527 - MIR SINE MIR -62 200 22 250 222 19 0 chr11 2077941 2077995 -146705477 - L2 LINE L2 0 3272 3218 * 266 299 28 75 chr11 2078168 2078224 -146705248 - MIR SINE MIR -49 213 156 2505 63 0 10 chr11 2078224 2078527 -146704945 + AluY SINE Alu 1 300 -11 266 299 28 75 chr11 2078527 2078684 -146704788 - MIR SINE MIR -106 156 10 297 278 85 46 chr11 2079739 2080020 -146703452 - HAL1 LINE L1 -1124 1383 1092 1160 186 11 76 chr11 2080046 2080321 -146703151 - L1MC1 LINE L1 0 6333 6077 329 280 119 0 chr11 2080624 2080767 -146702705 + L1P LINE L1 3725 3884 -2262 902 192 41 0 chr11 2081236 2081408 -146702064 - MSTD LTR MaLR 0 396 218 567 244 95 75 chr11 2081534 2081773 -146701699 + SATR1 Satellite Satellite 4 237 -687 2523 51 0 0 chr11 2081773 2082068 -146701404 + AluY SINE Alu 1 295 -16 567 244 95 75 chr11 2082068 2082389 -146701083 + SATR1 Satellite Satellite 237 778 -146 954 236 316 6 chr11 2082430 2083557 -146699915 + SATR1 Satellite Satellite 1 1476 -2 1063 218 187 53 chr11 2083581 2085365 -146698107 + SATR1 Satellite Satellite 1 2022 -404 2045 128 0 3 chr11 2087069 2087373 -146696099 + AluY SINE Alu 1 303 -8 195 250 81 81 chr11 2087431 2087567 -146695905 - L2 LINE L2 0 3272 3137 2093 120 0 19 chr11 2087929 2088245 -146695227 - AluSg SINE Alu 0 310 1 3391 208 17 63 chr11 2089177 2090193 -146693279 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr11 2090649 2090680 -146692792 + AT_rich Low_complexity Low_complexity 1 31 0 1244 225 15 44 chr11 2090700 2090953 -146692519 - L1MB3 LINE L1 -30 6153 5911 1962 153 0 7 chr11 2090953 2091247 -146692225 - AluSx SINE Alu -18 294 3 1244 225 15 44 chr11 2091247 2091335 -146692137 - L1MB3 LINE L1 -272 5911 5822 272 83 21 0 chr11 2091336 2091384 -146692088 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 8091 92 72 71 chr11 2091386 2092719 -146690753 + SVA Other Other 53 1386 0 709 228 41 15 chr11 2092737 2092957 -146690515 + MLT1C LTR MaLR 238 363 -2 2716 81 100 5 chr11 2093413 2093822 -146689650 + LTR7 LTR ERV1 1 448 -2 246 282 77 0 chr11 2094511 2094589 -146688883 + MLT1J2 LTR MaLR 252 335 -115 2009 133 3 0 chr11 2094969 2095278 -146688194 + AluSx SINE Alu 1 310 -2 1017 196 72 0 chr11 2096586 2096795 -146686677 + MER58A DNA MER1_type 1 224 0 231 353 0 0 chr11 2096992 2097060 -146686412 + L2 LINE L2 3153 3220 -52 1902 123 35 0 chr11 2097890 2098175 -146685297 + AluSx SINE Alu 5 299 -13 1974 128 24 0 chr11 2098556 2098852 -146684620 - AluSx SINE Alu -9 303 1 1779 119 32 11 chr11 2100125 2100410 -146683062 - AluSx SINE Alu -21 291 1 1899 101 4 14 chr11 2100488 2100797 -146682675 - AluSq SINE Alu 0 313 16 625 133 0 0 chr11 2100798 2100913 -146682559 + AluSg/x SINE Alu 198 309 0 431 73 176 0 chr11 2101448 2101516 -146681956 - MADE1 DNA Mariner 0 80 1 825 245 40 0 chr11 2102749 2102949 -146680523 - MER58A DNA MER1_type -16 208 1 2170 96 3 13 chr11 2105417 2105719 -146677753 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr11 2105720 2105762 -146677710 + (CA)n Simple_repeat Simple_repeat 1 42 0 1028 147 58 0 chr11 2105823 2106013 -146677459 - AluJo SINE Alu -6 306 106 1839 124 13 52 chr11 2106051 2106357 -146677115 - AluSx SINE Alu -11 301 8 1184 110 12 0 chr11 2106495 2106668 -146676804 + MER30 DNA MER1_type 1 175 -55 1317 151 5 0 chr11 2106786 2107005 -146676467 - AluJo SINE Alu -92 220 1 275 280 144 8 chr11 2107278 2107410 -146676062 + MIR SINE MIR 81 230 -32 247 254 15 15 chr11 2107568 2107635 -146675837 - MIR SINE MIR -115 147 81 628 314 74 0 chr11 2109402 2109631 -146673841 + L1MD2 LINE L1 5763 6008 -351 1782 128 45 14 chr11 2109688 2109844 -146673628 - AluSg SINE Alu -11 299 128 2198 104 3 0 chr11 2109844 2110143 -146673329 - AluSq SINE Alu -13 300 1 1782 128 45 14 chr11 2110143 2110274 -146673198 - AluSg SINE Alu -182 128 3 301 290 73 67 chr11 2110353 2110494 -146672978 - MIR SINE MIR -68 140 43 709 153 51 8 chr11 2110796 2110914 -146672558 + FLAM_A SINE Alu 4 126 -7 2050 132 3 0 chr11 2111413 2111717 -146671755 + AluSx SINE Alu 1 305 -7 510 275 194 14 chr11 2111729 2112096 -146671376 - LTR33A LTR ERVL -16 507 75 1990 141 0 0 chr11 2112991 2113288 -146670184 - AluSx SINE Alu -15 297 1 841 262 88 31 chr11 2114743 2115228 -146668244 + L2 LINE L2 2777 3312 -1 865 247 64 0 chr11 2115228 2115463 -146668009 - MIR SINE MIR 0 262 13 180 136 45 68 chr11 2115488 2115532 -146667940 + MIR SINE MIR 135 177 -85 413 253 88 50 chr11 2117732 2117914 -146665558 - L2 LINE L2 -3 3310 3122 2235 90 3 7 chr11 2118960 2119270 -146664202 - AluSq SINE Alu -4 309 1 1885 107 32 0 chr11 2119364 2119645 -146663827 - AluSc SINE Alu -19 290 1 1510 178 28 14 chr11 2120302 2120588 -146662884 + AluJo SINE Alu 1 290 -22 1442 192 27 72 chr11 2120608 2120761 -146662711 + MLT1C LTR MaLR 41 199 -268 1959 124 3 7 chr11 2120761 2121059 -146662413 + AluSx SINE Alu 1 297 -15 1442 192 27 72 chr11 2121059 2121306 -146662166 + MLT1C LTR MaLR 199 423 -44 2100 121 3 0 chr11 2121330 2121636 -146661836 - AluSq SINE Alu -6 307 1 1470 170 58 7 chr11 2121642 2121919 -146661553 - AluJo SINE Alu -21 291 1 538 164 95 9 chr11 2121920 2122036 -146661436 - MER45A DNA AcHobo -52 126 1 1454 176 127 0 chr11 2122816 2123083 -146660389 - AluJo SINE Alu -1 301 1 555 251 91 23 chr11 2124194 2124413 -146659059 - MIR SINE MIR 0 262 29 1331 185 46 73 chr11 2124575 2124877 -146658595 - AluJo SINE Alu -18 294 1 2016 126 7 10 chr11 2125075 2125385 -146658087 + AluSx SINE Alu 2 310 -2 2162 107 0 7 chr11 2126006 2126316 -146657156 - AluSx SINE Alu -4 308 1 1556 182 3 43 chr11 2126418 2126606 -146656866 - AluJb SINE Alu -1 311 140 1771 113 65 28 chr11 2126606 2126897 -146656575 - AluSx SINE Alu -10 302 1 1556 182 3 43 chr11 2126897 2127032 -146656440 - AluJb SINE Alu -172 140 1 1956 182 23 88 chr11 2127043 2127113 -146656359 - L1MB7 LINE L1 0 6184 6111 1774 157 3 10 chr11 2127113 2127413 -146656059 + AluJb SINE Alu 1 298 -14 1956 182 23 88 chr11 2127413 2127913 -146655559 - L1MB7 LINE L1 -73 6111 5651 4287 115 130 125 chr11 2128126 2129492 -146653980 - pTR5 LTR ERV1 0 2438 742 2349 156 46 11 chr11 2129492 2129929 -146653543 - MER66B LTR ERV1 -34 452 1 1453 172 0 16 chr11 2129929 2130179 -146653293 - AluJb SINE Alu -66 246 1 297 339 46 8 chr11 2130199 2130329 -146653143 + MIR SINE MIR 96 230 -32 1785 173 0 22 chr11 2130351 2130669 -146652803 - AluJo SINE Alu -1 311 1 183 167 0 0 chr11 2130808 2130850 -146652622 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2196 103 0 0 chr11 2130850 2131140 -146652332 - AluSx SINE Alu -22 290 1 550 286 14 0 chr11 2132017 2132164 -146651308 - MER104 DNA Tc2 -4 176 28 385 296 16 40 chr11 2132200 2132325 -146651147 + L1MC4 LINE L1 6582 6703 -1339 1402 157 0 67 chr11 2132339 2132450 -146651022 - AluJo SINE Alu -63 249 132 1910 161 0 0 chr11 2132450 2132748 -146650724 - AluSx SINE Alu -14 298 1 1402 157 0 67 chr11 2132748 2132903 -146650569 - AluJo SINE Alu -180 132 1 1086 101 0 0 chr11 2132998 2133146 -146650326 - AluSp/q SINE Alu -5 308 161 424 288 17 45 chr11 2133341 2133518 -146649954 + MLT1K LTR MaLR 98 269 -319 544 152 0 0 chr11 2133706 2133785 -146649687 + Alu SINE Alu 216 294 -17 1420 156 67 25 chr11 2133795 2134077 -146649395 + AluJo SINE Alu 1 294 -18 382 257 176 0 chr11 2134083 2134219 -146649253 + MIR SINE MIR 31 190 -72 965 217 69 0 chr11 2134857 2135074 -146648398 + LTR16A1 LTR ERVL 226 457 0 371 268 68 63 chr11 2135198 2135388 -146648084 + L2 LINE L2 3120 3310 -3 1966 155 0 3 chr11 2135446 2135756 -146647716 - AluSg SINE Alu -1 309 1 255 79 0 0 chr11 2136329 2136367 -146647105 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 161 0 0 chr11 2137564 2137626 -146645846 + GA-rich Low_complexity Low_complexity 1 62 0 739 266 99 9 chr11 2138449 2138682 -146644790 + MIR SINE MIR 3 256 -6 755 181 23 84 chr11 2138831 2138899 -146644573 - MER3 DNA MER1_type 0 209 138 2028 126 3 0 chr11 2138899 2139192 -146644280 + AluSx SINE Alu 1 294 -18 755 181 23 84 chr11 2139192 2139338 -146644134 - MER3 DNA MER1_type -71 138 8 3325 139 50 2 chr11 2139358 2139861 -146643611 - MER1A DNA MER1_type 0 527 1 2172 108 0 0 chr11 2139948 2140245 -146643227 - AluSq SINE Alu -16 297 1 575 314 24 24 chr11 2140269 2140479 -146642993 - MIR SINE MIR -45 217 8 337 284 74 0 chr11 2140829 2140924 -146642548 - L2 LINE L2 -12 3260 3159 458 275 8 15 chr11 2140978 2141109 -146642363 - MIR SINE MIR -54 208 79 2682 221 28 58 chr11 2141427 2142290 -146641182 - LTR5 LTR ERVK 0 969 133 9857 93 0 28 chr11 2242367 2243784 -146539688 + HERVH LTR ERV1 1537 2914 -4799 1374 94 5 15 chr11 2243884 2244087 -146539385 + AluY SINE Alu 104 304 -7 1665 154 20 24 chr11 2244174 2244472 -146539000 - AluJb SINE Alu -15 297 1 2030 141 0 10 chr11 2244476 2244788 -146538684 - AluSx SINE Alu -3 309 1 2316 73 0 3 chr11 2244795 2245095 -146538377 - AluY SINE Alu -12 299 1 496 212 66 15 chr11 2245145 2245282 -146538190 + L1ME2 LINE L1 5429 5572 -592 356 223 143 34 chr11 2245283 2245458 -146538014 + L1ME2 LINE L1 5695 5888 -276 1769 155 10 3 chr11 2245830 2246133 -146537339 + AluSx SINE Alu 6 310 -2 248 302 190 17 chr11 2246154 2246270 -146537202 + L3 LINE CR1 1286 1421 -156 2081 93 10 0 chr11 2246587 2246876 -146536596 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 2246973 2247002 -146536470 + AT_rich Low_complexity Low_complexity 1 29 0 870 171 158 10 chr11 2247141 2247438 -146536034 + Tigger2a DNA MER2_type 1 443 -1 1721 131 0 22 chr11 2247558 2247833 -146535639 + AluSx SINE Alu 1 269 -43 377 278 105 105 chr11 2247939 2248252 -146535220 - L2 LINE L2 -87 3185 2873 28 0 0 0 chr11 2248375 2248403 -146535069 + AT_rich Low_complexity Low_complexity 1 28 0 933 78 0 0 chr11 2248403 2248519 -146534953 - AluJb SINE Alu -194 118 3 252 278 213 9 chr11 2249625 2249733 -146533739 + MIR3 SINE MIR 51 180 -28 517 128 13 0 chr11 2250120 2250198 -146533274 - AluS SINE Alu -233 80 2 2021 252 26 6 chr11 2250198 2251193 -146532279 - L1MB3 LINE L1 -351 5832 4818 2084 97 3 3 chr11 2251238 2251538 -146531934 + AluSp SINE Alu 1 300 -13 1254 225 3 72 chr11 2251622 2251824 -146531648 - L1MA4 LINE L1 -175 6125 5961 1593 167 0 4 chr11 2251824 2252105 -146531367 - AluSx SINE Alu -32 280 1 1254 225 3 72 chr11 2252105 2252288 -146531184 - L1MA4 LINE L1 -339 5961 5767 278 259 105 35 chr11 2252326 2252469 -146531003 + HsTC2 DNA Tc2 1631 1783 -115 245 86 0 0 chr11 2252474 2252509 -146530963 + Alu SINE Alu 1 35 -266 1501 147 10 48 chr11 2252638 2252931 -146530541 - AluJo SINE Alu -8 304 23 360 299 215 49 chr11 2254363 2254688 -146528784 - L2 LINE L2 -2 3311 2933 4091 156 61 20 chr11 2255054 2255079 -146528393 + L1MB7 LINE L1 5142 5165 -1019 2350 88 0 0 chr11 2255079 2255386 -146528086 + AluSp SINE Alu 1 307 -6 4091 156 61 20 chr11 2255386 2256211 -146527261 + L1MB7 LINE L1 5165 6027 -157 2141 116 3 0 chr11 2256211 2256522 -146526950 - AluSx SINE Alu 0 312 1 4091 156 61 20 chr11 2256522 2256600 -146526872 + L1MB7 LINE L1 6027 6100 -84 1328 108 0 5 chr11 2256754 2256939 -146526533 - AluSx SINE Alu -128 184 1 625 230 103 118 chr11 2256941 2257280 -146526192 - L2 LINE L2 -12 3260 2927 1969 135 3 3 chr11 2258229 2258541 -146524931 - AluSx SINE Alu 0 312 1 785 189 0 0 chr11 2258543 2258675 -146524797 - FLAM_A SINE Alu -1 132 1 249 200 71 12 chr11 2259548 2259633 -146523839 - MIR SINE MIR -79 183 94 206 270 30 50 chr11 2259632 2259732 -146523740 + L2 LINE L2 2311 2408 -906 * 195 298 39 10 chr11 2259984 2260088 -146523384 + L2 LINE L2 2888 2994 -278 265 244 39 13 chr11 2260099 2260177 -146523295 + L2 LINE L2 3229 3308 -5 355 313 52 82 chr11 2260222 2260490 -146522982 + MIR SINE MIR 3 262 0 200 258 153 48 chr11 2261241 2261365 -146522107 - MIR3 SINE MIR -31 177 41 2330 62 3 7 chr11 2262018 2262323 -146521149 - AluY SINE Alu -7 304 1 1797 106 8 0 chr11 2262634 2262888 -146520584 + AluSq SINE Alu 52 307 -6 722 157 17 0 chr11 2262888 2263003 -146520469 - AluJo/FLAM SINE Alu -194 118 2 362 267 46 36 chr11 2263067 2263234 -146520238 + MIR SINE MIR 21 183 -62 221 333 50 17 chr11 2263566 2263686 -146519786 + L2 LINE L2 2930 3053 -219 320 273 13 0 chr11 2266106 2266183 -146517289 - MIR3 SINE MIR -5 203 126 182 270 32 16 chr11 2266492 2266555 -146516917 + MIR SINE MIR 108 171 -91 191 364 26 0 chr11 2267861 2267938 -146515534 + MIR SINE MIR 34 112 -150 1018 136 21 21 chr11 2268026 2268043 -146515429 + AluSg/x SINE Alu 118 134 -176 2145 112 16 0 chr11 2268043 2268348 -146515124 + AluSq SINE Alu 1 310 -3 1018 136 21 21 chr11 2268348 2268521 -146514951 + AluSg/x SINE Alu 133 308 -2 329 193 148 34 chr11 2268522 2268610 -146514862 - L1MC4 LINE L1 -1339 6703 6606 441 141 39 0 chr11 2268611 2268689 -146514783 - L1MB7 LINE L1 -84 6100 6020 940 439 90 4 chr11 2268689 2268967 -146514505 + AluJb SINE Alu 1 302 0 358 239 97 9 chr11 2269164 2269277 -146514195 + MER5B DNA MER1_type 50 172 -6 744 218 46 0 chr11 2269382 2269579 -146513893 - MER6B DNA MER2_type 0 210 5 1278 128 27 14 chr11 2271472 2271691 -146511781 + AluSq SINE Alu 1 222 -91 838 231 280 3 chr11 2271695 2272024 -146511448 + SATR1 Satellite Satellite 48 467 -3 2037 181 99 24 chr11 2272054 2272861 -146510611 + SATR1 Satellite Satellite 1 866 -93 2922 104 12 2 chr11 2272890 2273314 -146510158 - Tigger1 DNA MER2_type -1404 1014 587 1245 165 5 5 chr11 2273314 2273532 -146509940 + AluJo SINE Alu 1 218 -94 522 176 11 11 chr11 2273532 2273623 -146509849 + AluJb SINE Alu 84 174 -138 448 195 46 0 chr11 2273637 2273724 -146509748 + Tigger1 DNA MER2_type 501 591 -1827 424 115 33 0 chr11 2273724 2273785 -146509687 - Alu SINE Alu -16 296 234 583 68 0 0 chr11 2273791 2273864 -146509608 + AluSg/x SINE Alu 176 248 -62 1121 177 9 19 chr11 2273864 2273915 -146509557 + AluJo SINE Alu 85 135 -177 2343 86 0 6 chr11 2273915 2274228 -146509244 + AluY SINE Alu 1 311 0 1121 177 9 19 chr11 2274228 2274391 -146509081 + AluJo SINE Alu 135 297 -15 478 220 0 0 chr11 2274392 2274483 -146508989 - Tigger1 DNA MER2_type -1827 591 501 1251 143 37 0 chr11 2274600 2274789 -146508683 - Tigger1 DNA MER2_type -1944 474 279 1083 177 80 17 chr11 2274816 2275053 -146508419 + AluJo SINE Alu 44 295 -17 1542 153 38 11 chr11 2275053 2275314 -146508158 - Tigger1 DNA MER2_type -2127 291 24 301 284 183 24 chr11 2275514 2275683 -146507789 - MIR3 SINE MIR -10 198 3 399 308 17 17 chr11 2276153 2276273 -146507199 + L2 LINE L2 3192 3311 -2 351 230 14 0 chr11 2276295 2276369 -146507103 + MER94 DNA DNA 1 75 -59 237 335 7 20 chr11 2277263 2277415 -146506057 + CT-rich Low_complexity Low_complexity 2 151 0 410 289 59 48 chr11 2278059 2278246 -146505226 + MIR SINE MIR 59 247 -15 223 339 99 6 chr11 2278362 2278533 -146504939 + L2 LINE L2 2168 2354 -960 1140 148 31 10 chr11 2278601 2278797 -146504675 - AluJo SINE Alu -112 200 1 2121 67 34 17 chr11 2279218 2279515 -146503957 + AluY SINE Alu 1 302 -9 1589 173 7 0 chr11 2279613 2279884 -146503588 - AluJo SINE Alu -39 273 1 191 293 43 0 chr11 2280001 2280055 -146503417 - MIR SINE MIR -104 104 48 216 237 46 118 chr11 2280235 2280387 -146503085 - MIR SINE MIR -69 193 53 28 29 0 0 chr11 2280740 2280775 -146502697 + AT_rich Low_complexity Low_complexity 1 35 0 264 325 18 61 chr11 2282562 2282676 -146500796 - MIR SINE MIR -81 127 19 295 269 181 40 chr11 2282833 2282982 -146500490 - L2 LINE L2 -184 3088 2919 670 149 116 25 chr11 2283069 2283190 -146500282 - FLAM_C SINE Alu 0 133 2 316 352 56 16 chr11 2283270 2283395 -146500077 + L2 LINE L2 3139 3268 -4 278 208 19 0 chr11 2283471 2283524 -146499948 - L2 LINE L2 -11 3261 3208 1422 103 43 47 chr11 2283576 2283810 -146499662 + AluSg SINE Alu 64 296 -14 309 321 73 73 chr11 2283811 2284029 -146499443 - MIR SINE MIR -22 240 23 1867 150 0 7 chr11 2284441 2284741 -146498731 + AluSx SINE Alu 7 304 -8 10374 149 61 65 chr11 2285434 2286140 -146497332 - Tigger1 DNA MER2_type 0 2418 1711 1606 166 17 20 chr11 2286140 2286442 -146497030 - AluJb SINE Alu -9 303 3 10374 149 61 65 chr11 2286442 2286655 -146496817 - Tigger1 DNA MER2_type -707 1711 1499 1671 156 3 7 chr11 2286655 2286937 -146496535 - AluJb SINE Alu -31 281 1 10374 149 61 65 chr11 2286937 2288442 -146495030 - Tigger1 DNA MER2_type -919 1499 1 23 0 0 0 chr11 2288541 2288564 -146494908 + AT_rich Low_complexity Low_complexity 1 23 0 2015 116 10 0 chr11 2289142 2289434 -146494038 - AluSp SINE Alu -18 295 1 299 73 0 0 chr11 2290832 2290873 -146492599 - Alu SINE Alu -5 297 257 418 238 0 10 chr11 2290910 2291011 -146492461 - L1MA10 LINE L1 -30 6304 6205 1651 142 33 11 chr11 2291017 2291292 -146492180 + AluSx SINE Alu 6 286 -26 1152 191 9 26 chr11 2291314 2291544 -146491928 - AluJb SINE Alu -86 226 1 1316 196 19 16 chr11 2291544 2291861 -146491611 - L1M4 LINE L1 -842 5304 4987 512 251 23 51 chr11 2291865 2292080 -146491392 + L1M4 LINE L1 3170 3378 -2768 802 61 0 0 chr11 2292090 2292188 -146491284 + AluY SINE Alu 1 98 -220 539 122 71 0 chr11 2292219 2292317 -146491155 + L1MB3 LINE L1 5338 5442 -728 * 695 117 39 36 chr11 2292314 2292433 -146491039 + L1MB3 LINE L1 6027 6135 -45 2145 71 29 35 chr11 2292433 2292743 -146490729 + AluY SINE Alu 1 308 -3 695 117 39 36 chr11 2292743 2292789 -146490683 + L1MB3 LINE L1 6135 6179 -1 1816 109 0 0 chr11 2292823 2293070 -146490402 + AluSx SINE Alu 1 247 -65 2138 81 3 11 chr11 2293177 2293481 -146489991 + AluSx SINE Alu 2 303 0 213 232 0 0 chr11 2293813 2293882 -146489590 + (TTCA)n Simple_repeat Simple_repeat 3 71 0 592 239 149 12 chr11 2293894 2294149 -146489323 - L1MC4 LINE L1 0 8042 7753 235 155 86 0 chr11 2294157 2294215 -146489257 - L1MCa LINE L1 -4358 2068 2006 317 315 0 22 chr11 2294221 2294310 -146489162 + L1MC4 LINE L1 6617 6703 -1339 * 339 310 23 0 chr11 2294282 2294369 -146489103 - L1MC4 LINE L1 -1339 6703 6615 2083 98 3 0 chr11 2294369 2294664 -146488808 - AluSg SINE Alu -14 296 1 1489 249 179 15 chr11 2294666 2295250 -146488222 - L1MC4 LINE L1 -282 7760 7047 2229 113 0 0 chr11 2295250 2295560 -146487912 - AluSx SINE Alu -2 310 1 1489 249 179 15 chr11 2295560 2295655 -146487817 - L1MC4 LINE L1 -995 7047 6969 2113 111 7 0 chr11 2295705 2296003 -146487469 - AluSx SINE Alu -12 300 1 1830 155 4 4 chr11 2296023 2296301 -146487171 - AluJb SINE Alu -12 300 23 262 326 165 25 chr11 2296575 2296811 -146486661 - L2 LINE L2 -185 3087 2819 1699 154 82 4 chr11 2297229 2297509 -146485963 - AluJb SINE Alu -8 304 3 422 276 96 82 chr11 2297866 2297921 -146485551 + L2 LINE L2 2569 2622 -650 2034 148 0 3 chr11 2297921 2298212 -146485260 - AluSx SINE Alu -22 290 1 422 276 96 82 chr11 2298212 2298633 -146484839 + L2 LINE L2 2622 3070 -202 849 135 0 64 chr11 2298685 2298826 -146484646 - FLAM_C SINE Alu -11 132 1 376 254 118 0 chr11 2298880 2298990 -146484482 + L2 LINE L2 3191 3313 0 263 280 0 13 chr11 2301346 2301421 -146482051 + (CTCA)n Simple_repeat Simple_repeat 2 75 0 2478 66 0 7 chr11 2302975 2303278 -146480194 - AluY SINE Alu -10 301 1 1131 142 12 0 chr11 2305443 2305612 -146477860 - AluSg/x SINE Alu -8 302 132 2353 100 0 3 chr11 2305612 2305912 -146477560 - AluSx SINE Alu -7 305 7 307 288 0 0 chr11 2305915 2305988 -146477484 + MIR SINE MIR 51 123 -139 261 275 14 0 chr11 2306070 2306139 -146477333 + L3 LINE CR1 1494 1563 -14 1873 104 107 4 chr11 2308142 2308422 -146475050 + AluSg1 SINE Alu 1 309 0 2537 59 0 0 chr11 2308779 2309068 -146474404 + AluSc SINE Alu 1 289 -20 1655 205 109 17 chr11 2309399 2309819 -146473653 - LTR2B LTR ERV1 0 490 32 415 315 129 4 chr11 2310550 2310791 -146472681 - L2 LINE L2 -83 3189 2919 193 370 59 0 chr11 2311036 2311155 -146472317 - L2 LINE L2 -565 2749 2624 236 200 0 0 chr11 2311696 2311741 -146471731 - L2 LINE L2 -2 3270 3226 1161 145 31 110 chr11 2311754 2311881 -146471591 + L1MA10 LINE L1 6042 6177 -157 195 42 0 0 chr11 2311881 2311905 -146471567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2117 100 14 11 chr11 2311914 2312224 -146471248 + AluSp SINE Alu 1 311 0 2028 143 6 16 chr11 2312229 2312544 -146470928 + AluSx SINE Alu 1 312 0 1161 145 31 110 chr11 2312544 2312717 -146470755 + L1MA10 LINE L1 6189 6334 0 2288 66 5 2 chr11 2312824 2313182 -146470290 + LTR7 LTR ERV1 1 448 -2 10108 95 3 10 chr11 2313184 2314657 -146468815 + HERVH LTR ERV1 1 1462 -6251 717 36 0 0 chr11 2314757 2314841 -146468631 + LTR7 LTR ERV1 365 448 -2 269 367 9 0 chr11 2314883 2314992 -146468480 + L2 LINE L2 2420 2529 -785 643 282 68 19 chr11 2316551 2316914 -146466558 - LTR16C LTR ERVL -2 489 52 325 286 91 26 chr11 2317018 2317172 -146466300 - MLT1K LTR MaLR -326 262 99 2432 92 0 3 chr11 2317259 2317564 -146465908 - AluSq SINE Alu -9 304 1 1309 138 0 96 chr11 2317579 2317686 -146465786 - AluJo SINE Alu -77 235 119 306 0 0 0 chr11 2317686 2317720 -146465752 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1989 96 4 0 chr11 2317726 2317977 -146465495 - AluSx SINE Alu -25 287 36 1309 138 0 96 chr11 2317977 2318122 -146465350 - AluJo SINE Alu -198 114 1 204 164 0 55 chr11 2318206 2318261 -146465211 - L2 LINE L2 -930 2384 2333 2146 131 0 0 chr11 2318623 2318920 -146464552 + AluJo SINE Alu 1 297 -15 402 282 74 31 chr11 2318922 2319382 -146464090 + L1ME4a LINE L1 5437 5905 -216 2290 108 3 16 chr11 2319382 2319698 -146463774 + AluSx SINE Alu 1 312 0 292 205 16 0 chr11 2320471 2320544 -146462928 - MIR SINE MIR -66 142 80 2514 68 0 10 chr11 2322821 2323128 -146460344 - AluSq SINE Alu -9 304 1 420 254 79 0 chr11 2323477 2323607 -146459865 + MIR3 SINE MIR 28 168 -40 282 264 104 110 chr11 2323811 2323893 -146459579 - MIR SINE MIR -75 187 106 2417 64 4 0 chr11 2323893 2324209 -146459263 + AluSp SINE Alu 1 317 0 282 264 104 110 chr11 2324209 2324307 -146459165 - MIR SINE MIR -156 106 7 1162 0 50 6 chr11 2324333 2324492 -146458980 + (CATCT)n Simple_repeat Simple_repeat 5 170 0 355 254 67 8 chr11 2324534 2324655 -146458817 - MIR SINE MIR -82 126 21 1444 146 0 0 chr11 2324929 2325135 -146458337 - AluJo SINE Alu -21 291 86 609 118 0 11 chr11 2325148 2325241 -146458231 - HY4 scRNA scRNA 0 93 2 334 274 45 57 chr11 2325901 2326058 -146457414 + L2 LINE L2 3031 3185 -87 1025 167 0 0 chr11 2326334 2326484 -146456988 - AluJo SINE Alu -76 236 87 555 140 0 11 chr11 2326496 2326589 -146456883 - HY4 scRNA scRNA 0 93 2 1156 178 130 0 chr11 2326590 2326837 -146456635 + MLT2B3 LTR ERVL 43 321 -233 513 243 15 7 chr11 2328198 2328334 -146455138 + MIR SINE MIR 126 262 0 261 233 48 101 chr11 2329412 2329562 -146453910 + MER34B LTR ERV1 322 462 -103 2438 74 0 0 chr11 2329562 2329858 -146453614 + AluY SINE Alu 1 296 -15 261 233 48 101 chr11 2329858 2329896 -146453576 + MER34B LTR ERV1 462 500 -65 207 302 223 0 chr11 2330821 2330960 -146452512 + MIR SINE MIR 77 246 -16 292 284 67 37 chr11 2331808 2331942 -146451530 + L1ME1 LINE L1 6000 6137 -29 2245 123 0 0 chr11 2332349 2332649 -146450823 - AluSx SINE Alu -12 300 1 602 206 30 0 chr11 2332703 2332834 -146450638 + FLAM_C SINE Alu 1 135 -8 595 101 20 20 chr11 2332842 2332941 -146450531 + U13 snRNA snRNA 6 104 0 828 155 101 54 chr11 2332972 2333140 -146450332 + FRAM SINE Alu 1 170 -6 1844 98 117 4 chr11 2333143 2333408 -146450064 + AluSg1 SINE Alu 3 297 -12 566 228 0 0 chr11 2334372 2334486 -146448986 - FLAM_C SINE Alu -27 116 3 1091 83 0 0 chr11 2334744 2334877 -146448595 + AluSq/x SINE Alu 1 133 -179 2267 114 7 0 chr11 2334886 2335194 -146448278 + AluSq SINE Alu 1 310 -3 2410 100 0 0 chr11 2335255 2335556 -146447916 + AluY SINE Alu 1 301 -10 611 202 0 17 chr11 2335568 2335687 -146447785 + AluJ SINE Alu 6 122 -190 997 193 0 0 chr11 2335805 2335966 -146447506 + AluJ SINE Alu 129 289 -23 2060 147 3 0 chr11 2336706 2337006 -146446466 + AluSq SINE Alu 1 301 -12 1957 158 0 0 chr11 2337018 2337297 -146446175 + AluSx SINE Alu 3 281 -31 2224 119 6 3 chr11 2337323 2337634 -146445838 + AluSx SINE Alu 1 312 0 878 135 14 21 chr11 2337927 2338068 -146445404 + FLAM_C SINE Alu 1 140 -3 2095 119 3 34 chr11 2338325 2338645 -146444827 + AluSq SINE Alu 1 310 -3 375 286 140 76 chr11 2338851 2339207 -146444265 + L1ME4a LINE L1 5743 6121 0 2497 80 10 0 chr11 2339246 2339548 -146443924 + AluSq SINE Alu 1 305 -8 805 122 0 43 chr11 2339687 2339796 -146443676 + AluJo/FLAM SINE Alu 1 104 -198 2371 87 0 0 chr11 2339796 2340084 -146443388 - AluSc SINE Alu -20 289 2 805 122 0 43 chr11 2340084 2340113 -146443359 + AluJo/FLAM SINE Alu 104 133 -169 215 255 0 0 chr11 2340114 2340165 -146443307 - MIR SINE MIR -65 143 93 315 228 206 15 chr11 2340709 2340845 -146442627 + MIR SINE MIR 1 162 -100 1653 88 5 0 chr11 2340847 2341051 -146442421 + AluSx SINE Alu 9 213 -99 815 174 158 10 chr11 2341295 2341592 -146441880 + Tigger2a DNA MER2_type 1 443 -1 2098 128 0 20 chr11 2341712 2342017 -146441455 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr11 2342281 2342308 -146441164 + AT_rich Low_complexity Low_complexity 1 27 0 2032 138 0 10 chr11 2342308 2342605 -146440867 - AluSx SINE Alu -18 294 1 1058 164 6 0 chr11 2342887 2343052 -146440420 + AluSg/x SINE Alu 124 289 -20 1648 176 68 56 chr11 2343091 2343218 -146440254 - Charlie1 DNA MER1_type -349 2412 2288 2081 112 30 3 chr11 2343218 2343513 -146439959 - AluSx SINE Alu -9 303 1 1648 176 68 56 chr11 2343513 2343696 -146439776 - Charlie1 DNA MER1_type -473 2288 2093 1941 137 0 11 chr11 2343696 2344009 -146439463 - AluSx SINE Alu 0 312 14 1648 176 68 56 chr11 2344009 2344141 -146439331 - Charlie1 DNA MER1_type -668 2093 1964 2501 87 0 0 chr11 2344141 2344452 -146439020 - AluY SINE Alu 0 311 1 2253 114 3 0 chr11 2344490 2344787 -146438685 - AluSg SINE Alu -12 298 1 1202 141 5 5 chr11 2344787 2344985 -146438487 - AluYa5 SINE Alu -1 310 113 218 204 0 0 chr11 2345219 2345263 -146438209 + L2 LINE L2 3270 3313 0 344 98 33 0 chr11 2345341 2345402 -146438070 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 2386 88 0 7 chr11 2345412 2345718 -146437754 + AluSg SINE Alu 1 304 -6 2298 112 0 6 chr11 2345734 2346048 -146437424 + AluSq SINE Alu 2 313 0 734 216 6 28 chr11 2346053 2346229 -146437243 + MIR SINE MIR 91 262 0 2629 50 0 0 chr11 2346243 2346543 -146436929 + AluY SINE Alu 1 300 -11 2064 109 3 21 chr11 2346547 2346832 -146436640 + AluSx SINE Alu 3 310 0 253 0 0 0 chr11 2346832 2346860 -146436612 + (TAAA)n Simple_repeat Simple_repeat 1 128 0 228 163 0 0 chr11 2346929 2346972 -146436500 + T-rich Low_complexity Low_complexity 1 43 0 280 291 103 8 chr11 2347563 2347680 -146435792 + MIR SINE MIR 18 145 -63 2464 61 3 13 chr11 2347699 2347875 -146435597 - AluY SINE Alu -3 308 135 2335 84 10 3 chr11 2347875 2348173 -146435299 - AluSx SINE Alu -12 300 1 2464 61 3 13 chr11 2348173 2348307 -146435165 - AluY SINE Alu -176 135 1 2098 137 0 0 chr11 2348308 2348608 -146434864 - AluSx SINE Alu -12 300 1 2047 140 0 0 chr11 2348678 2348971 -146434501 - AluSx SINE Alu -19 293 1 2255 104 0 16 chr11 2349565 2349881 -146433591 - AluSx SINE Alu -1 311 1 208 221 233 0 chr11 2350050 2350136 -146433336 - MIR SINE MIR -1 261 156 1204 172 9 9 chr11 2350136 2350357 -146433115 - AluSg/x SINE Alu -7 305 85 680 384 0 0 chr11 2350457 2350608 -146432864 + C-rich Low_complexity Low_complexity 1 151 0 455 237 12 12 chr11 2350647 2350816 -146432656 + C-rich Low_complexity Low_complexity 1 169 0 24 32 0 0 chr11 2351343 2351374 -146432098 + AT_rich Low_complexity Low_complexity 1 31 0 306 79 0 4 chr11 2352522 2352737 -146430735 + AluSc SINE Alu 1 302 0 2111 109 44 7 chr11 2353704 2353997 -146429475 - AluSx SINE Alu -8 304 1 2423 86 0 6 chr11 2354122 2354435 -146429037 - AluY SINE Alu 0 311 1 2834 155 65 6 chr11 2354436 2354946 -146428526 - L1MB2 LINE L1 -41 6130 5591 373 264 51 34 chr11 2355225 2355363 -146428109 + MER102b DNA MER1_type 12 151 -190 1751 154 13 33 chr11 2355370 2355675 -146427797 - AluJo SINE Alu -13 299 1 528 316 123 35 chr11 2355924 2356329 -146427143 - L2 LINE L2 0 3272 2832 306 84 0 4 chr11 2358094 2358309 -146425163 + AluSc SINE Alu 1 301 0 2095 110 45 7 chr11 2359277 2359568 -146423904 - AluSx SINE Alu -10 302 1 2247 89 0 7 chr11 2359693 2359985 -146423487 - AluY SINE Alu 0 311 22 929 188 218 4 chr11 2360028 2360262 -146423210 + AluSg1 SINE Alu 1 284 -25 324 0 0 0 chr11 2360300 2360336 -146423136 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr11 2360335 2360359 -146423113 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 494 262 81 62 chr11 2361146 2361206 -146422266 - MIR SINE MIR -30 232 175 2247 104 3 7 chr11 2361206 2361505 -146421967 - AluSg SINE Alu -12 298 1 494 262 81 62 chr11 2361505 2361654 -146421818 - MIR SINE MIR -87 175 19 29 28 0 0 chr11 2361805 2361841 -146421631 + AT_rich Low_complexity Low_complexity 1 36 0 776 182 0 0 chr11 2361856 2361977 -146421495 - FLAM_C SINE Alu -22 121 1 1444 196 17 24 chr11 2362714 2363010 -146420462 + AluJo SINE Alu 2 295 -17 269 336 73 0 chr11 2363488 2363598 -146419874 + L2 LINE L2 3145 3262 -10 1823 127 0 68 chr11 2363857 2364181 -146419291 + AluSx SINE Alu 1 302 -10 1531 118 111 80 chr11 2365455 2365744 -146417728 + AluSx SINE Alu 1 298 -14 2146 137 3 3 chr11 2365808 2366114 -146417358 + AluSp SINE Alu 1 306 -7 37 0 0 0 chr11 2366272 2366309 -146417163 + AT_rich Low_complexity Low_complexity 1 37 0 183 200 100 0 chr11 2366799 2366849 -146416623 + MER5B DNA MER1_type 1 55 -123 849 223 46 65 chr11 2366858 2367118 -146416354 + AluJo SINE Alu 1 255 -57 218 382 18 0 chr11 2367134 2367244 -146416228 + MER5B DNA MER1_type 50 161 -17 2302 103 0 3 chr11 2367246 2367558 -146415914 + AluSx SINE Alu 1 311 -1 532 269 46 64 chr11 2367595 2367814 -146415658 + MER102b DNA MER1_type 127 341 0 1964 163 0 0 chr11 2367868 2368168 -146415304 + AluSx SINE Alu 1 300 -12 597 172 114 41 chr11 2368377 2368585 -146414887 - MIR SINE MIR -10 252 42 1940 125 35 3 chr11 2369690 2369979 -146413493 + AluSx SINE Alu 1 298 -14 2322 86 0 0 chr11 2370102 2370394 -146413078 + AluSc SINE Alu 1 292 -17 1859 103 52 7 chr11 2370711 2370982 -146412490 + AluSq SINE Alu 1 283 -30 180 0 0 0 chr11 2370985 2371005 -146412467 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2041 125 3 7 chr11 2371054 2371359 -146412113 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr11 2371403 2371432 -146412040 + AT_rich Low_complexity Low_complexity 1 29 0 279 280 112 0 chr11 2371433 2371540 -146411932 + MIR SINE MIR 65 183 -79 1106 154 8 9 chr11 2371892 2372158 -146411314 - AluJb SINE Alu 0 312 2 1849 121 11 21 chr11 2372160 2372473 -146410999 - AluSc SINE Alu 0 310 1 1796 226 49 23 chr11 2372814 2373287 -146410185 + Charlie1a DNA MER1_type 2 486 -969 2432 71 0 0 chr11 2373289 2373585 -146409887 - AluY SINE Alu -15 296 1 1199 164 110 82 chr11 2373725 2374017 -146409455 + AluSx SINE Alu 13 312 0 2113 136 7 3 chr11 2374088 2374389 -146409083 + AluSx SINE Alu 1 302 -10 183 369 0 15 chr11 2374463 2374528 -146408944 + L2 LINE L2 3189 3252 -20 850 138 32 0 chr11 2375530 2375653 -146407819 + FLAM_C SINE Alu 1 127 -16 1079 192 14 23 chr11 2375691 2375910 -146407562 + AluJo SINE Alu 1 217 -95 1419 69 0 6 chr11 2376066 2376241 -146407231 + L1PA3 LINE L1 5974 6147 -8 245 330 0 31 chr11 2376337 2376434 -146407038 + MER5B DNA MER1_type 4 97 -81 1523 164 34 27 chr11 2377219 2377512 -146405960 + AluSx SINE Alu 1 295 -17 28 48 0 0 chr11 2377830 2377872 -146405600 + AT_rich Low_complexity Low_complexity 1 42 0 1612 191 0 4 chr11 2379697 2379974 -146403498 + AluJo SINE Alu 1 276 -36 5020 190 86 90 chr11 2380819 2381033 -146402439 - L1MB3 LINE L1 -174 6009 5796 480 104 15 0 chr11 2381033 2381100 -146402372 - U6 snRNA snRNA 0 107 40 5020 190 86 90 chr11 2381100 2381414 -146402058 - L1MB3 LINE L1 -387 5796 5482 1774 146 43 0 chr11 2381414 2381694 -146401778 - AluSg SINE Alu -18 292 1 5020 190 86 90 chr11 2381694 2381852 -146401620 - L1MB3 LINE L1 -701 5482 5325 1258 164 48 106 chr11 2381852 2382164 -146401308 - AluJo SINE Alu -14 298 5 5020 190 86 90 chr11 2382164 2382685 -146400787 - L1MB3 LINE L1 -858 5325 4804 1678 183 3 10 chr11 2382685 2382974 -146400498 + AluJb SINE Alu 1 287 -25 5020 190 86 90 chr11 2382974 2383272 -146400200 - L1MB3 LINE L1 -1379 4804 4507 1898 118 35 14 chr11 2383272 2383559 -146399913 - AluSx SINE Alu -19 293 1 5020 190 86 90 chr11 2383559 2384506 -146398966 - L1MB3 LINE L1 -1676 4507 3474 2232 129 3 0 chr11 2384515 2384825 -146398647 + AluSq SINE Alu 1 311 -2 190 130 0 43 chr11 2384829 2384875 -146398597 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 300 154 0 0 chr11 2384878 2384930 -146398542 - L1MB3 LINE L1 -2679 3467 3416 2301 102 0 0 chr11 2385099 2385439 -146398033 + AluSq SINE Alu 1 340 0 1549 177 53 14 chr11 2385541 2385824 -146397648 - AluJo SINE Alu -16 296 3 21 0 0 0 chr11 2385883 2385904 -146397568 + AT_rich Low_complexity Low_complexity 1 21 0 1538 169 59 0 chr11 2385969 2386266 -146397206 + AluJb SINE Alu 1 313 0 374 267 23 46 chr11 2386932 2387063 -146396409 - MIR SINE MIR -1 261 134 27 0 0 0 chr11 2387163 2387190 -146396282 + AT_rich Low_complexity Low_complexity 1 27 0 284 79 0 0 chr11 2387273 2387311 -146396161 - MER4E LTR ERV1 -75 691 654 295 247 105 57 chr11 2387315 2387562 -146395910 + L1ME4a LINE L1 5688 5946 -175 2034 132 6 19 chr11 2387574 2387885 -146395587 + AluSq SINE Alu 1 307 -6 1873 130 41 3 chr11 2387934 2388226 -146395246 + AluSx SINE Alu 1 303 -9 1024 167 36 50 chr11 2389235 2389456 -146394016 - AluJb SINE Alu -13 299 82 426 228 44 9 chr11 2389472 2389586 -146393886 + L1M4 LINE L1 2653 2770 -3376 718 270 48 89 chr11 2389691 2390202 -146393270 + L1M4 LINE L1 3085 3567 -2579 1291 177 106 39 chr11 2390202 2390485 -146392987 - AluJo SINE Alu -8 304 3 718 270 48 89 chr11 2390485 2390603 -146392869 + L1M4 LINE L1 3567 3688 -2458 360 207 94 47 chr11 2390603 2390730 -146392742 + FLAM_A SINE Alu 15 131 -2 392 296 8 8 chr11 2390834 2390966 -146392506 + L1MC4 LINE L1 6898 7029 -1013 703 195 9 0 chr11 2391010 2391123 -146392349 + FLAM_C SINE Alu 6 119 -24 1649 178 14 3 chr11 2391166 2391458 -146392014 + AluJo SINE Alu 1 295 -17 3400 259 59 18 chr11 2391466 2391877 -146391595 - L2 LINE L2 -248 3065 2672 2264 99 0 13 chr11 2391877 2392190 -146391282 + AluY SINE Alu 1 309 -2 3400 259 59 18 chr11 2392190 2392846 -146390626 - L2 LINE L2 -641 2672 1950 1584 154 46 39 chr11 2392859 2393165 -146390307 + AluJo SINE Alu 1 308 -4 2000 127 38 0 chr11 2393383 2393674 -146389798 + AluSx SINE Alu 1 302 -10 2020 124 3 26 chr11 2393781 2394087 -146389385 - AluSx SINE Alu -13 299 1 617 174 9 28 chr11 2394137 2394246 -146389226 + AluJb SINE Alu 195 301 -11 261 130 143 26 chr11 2394316 2394393 -146389079 + L1ME4a LINE L1 5994 6079 -42 2108 127 10 0 chr11 2394408 2394708 -146388764 + AluSx SINE Alu 1 303 -9 26 64 0 0 chr11 2394725 2394772 -146388700 + AT_rich Low_complexity Low_complexity 1 47 0 1386 138 51 0 chr11 2395169 2395386 -146388086 - MER46A DNA MER2_type 0 236 9 1119 114 0 6 chr11 2395521 2395679 -146387793 + AluSg/x SINE Alu 132 288 -22 1711 188 65 48 chr11 2396462 2396733 -146386739 - L1MB7 LINE L1 -18 6166 5884 2099 134 0 0 chr11 2396733 2397031 -146386441 - AluSq SINE Alu -11 302 5 1711 188 65 48 chr11 2397031 2397175 -146386297 - L1MB7 LINE L1 -300 5884 5744 198 200 73 55 chr11 2397267 2397322 -146386150 + L2 LINE L2 3222 3277 -36 2232 101 10 0 chr11 2397458 2397755 -146385717 - AluSq SINE Alu -12 301 2 305 308 149 34 chr11 2397836 2398044 -146385428 - MIR SINE MIR -21 241 10 304 322 49 0 chr11 2398101 2398207 -146385265 + MIR SINE MIR 34 148 -63 665 148 157 0 chr11 2398208 2398323 -146385149 + FLAM_C SINE Alu 1 133 0 32 43 0 0 chr11 2398749 2398795 -146384677 + AT_rich Low_complexity Low_complexity 1 46 0 353 276 35 55 chr11 2398903 2399102 -146384370 + L1ME LINE L1 5290 5484 -758 378 0 0 0 chr11 2399172 2399214 -146384258 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr11 2399257 2399286 -146384186 + (TG)n Simple_repeat Simple_repeat 2 30 0 1410 182 4 30 chr11 2399364 2399500 -146383972 - AluJb SINE Alu -50 262 135 207 0 0 0 chr11 2399500 2399523 -146383949 + (TG)n Simple_repeat Simple_repeat 2 24 0 1410 182 4 30 chr11 2399523 2399655 -146383817 - AluJb SINE Alu -177 135 1 277 239 62 54 chr11 2399727 2399799 -146383673 + L1ME LINE L1 5698 5773 -348 1644 130 115 4 chr11 2399799 2400069 -146383403 + AluSx SINE Alu 1 300 -12 277 239 62 54 chr11 2400069 2400126 -146383346 + L1ME LINE L1 5773 5828 -293 180 0 0 0 chr11 2400745 2400765 -146382707 + (A)n Simple_repeat Simple_repeat 1 20 0 2307 98 0 7 chr11 2400767 2401073 -146382399 + AluY SINE Alu 1 304 -7 180 0 0 0 chr11 2401511 2401531 -146381941 + (A)n Simple_repeat Simple_repeat 1 20 0 1868 157 10 3 chr11 2401925 2402230 -146381242 + AluSx SINE Alu 6 312 0 235 312 185 25 chr11 2402248 2402405 -146381067 + L3 LINE CR1 1286 1467 -110 2091 111 10 0 chr11 2402681 2402970 -146380502 - AluSx SINE Alu -20 292 1 2564 244 149 13 chr11 2402971 2403917 -146379555 - L1M4 LINE L1 -1598 4548 3474 2232 129 3 0 chr11 2403926 2404236 -146379236 + AluSq SINE Alu 1 311 -2 190 130 0 43 chr11 2404240 2404286 -146379186 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 300 154 0 0 chr11 2404289 2404341 -146379131 - L1M4 LINE L1 -2679 3467 3416 2301 102 0 0 chr11 2404510 2404850 -146378622 + AluSq SINE Alu 1 340 0 240 35 0 0 chr11 2405426 2405455 -146378017 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1507 204 18 4 chr11 2405459 2405733 -146377739 - AluJb SINE Alu -34 278 1 546 187 19 0 chr11 2406093 2406200 -146377272 + FLAM_A SINE Alu 33 141 -1 207 69 0 0 chr11 2406505 2406534 -146376938 + (A)n Simple_repeat Simple_repeat 1 29 0 336 24 0 0 chr11 2406640 2406681 -146376791 + (TG)n Simple_repeat Simple_repeat 1 41 0 1891 136 0 7 chr11 2407088 2407367 -146376105 + AluSq SINE Alu 1 277 -36 258 156 0 0 chr11 2407367 2407412 -146376060 + GA-rich Low_complexity Low_complexity 1 45 0 1551 96 0 5 chr11 2407726 2407925 -146375547 + AluY SINE Alu 104 301 -10 261 172 23 58 chr11 2407939 2408026 -146375446 - MER113 DNA MER1_type? -435 86 3 2156 123 0 23 chr11 2408030 2408339 -146375133 + AluSg SINE Alu 1 302 -8 327 295 86 49 chr11 2408422 2408666 -146374806 + HAL1 LINE L1 2236 2488 -19 349 325 49 18 chr11 2409088 2409251 -146374221 + MIR SINE MIR 88 255 -7 367 273 136 8 chr11 2409251 2409383 -146374089 - MIR SINE MIR -100 162 14 23 33 0 0 chr11 2409414 2409444 -146374028 + AT_rich Low_complexity Low_complexity 1 30 0 617 204 74 0 chr11 2409902 2410010 -146373462 - FLAM_A SINE Alu -17 116 1 2583 68 3 0 chr11 2410246 2410553 -146372919 + AluSp SINE Alu 1 308 -5 2261 101 3 3 chr11 2410889 2411197 -146372275 + AluSx SINE Alu 1 308 -4 315 312 96 25 chr11 2411217 2411374 -146372098 + MIR3 SINE MIR 27 194 -14 1892 147 7 3 chr11 2411487 2411773 -146371699 + AluJb SINE Alu 14 300 -12 205 250 0 31 chr11 2411945 2412009 -146371463 - MIR SINE MIR -41 221 160 2301 91 10 0 chr11 2412083 2412379 -146371093 + AluSx SINE Alu 4 302 -10 1226 157 114 0 chr11 2412385 2412621 -146370851 + Tigger7 DNA MER2_type 2224 2486 -1 271 116 23 0 chr11 2412624 2412667 -146370805 - MIR SINE MIR -63 145 102 719 173 0 0 chr11 2412904 2413008 -146370464 - AluJb SINE Alu -13 299 196 956 179 0 6 chr11 2413031 2413219 -146370253 - FRAM SINE Alu 0 176 1 305 336 104 8 chr11 2413236 2413361 -146370111 + L2 LINE L2 3136 3272 0 363 23 0 0 chr11 2413807 2413851 -146369621 + (TG)n Simple_repeat Simple_repeat 2 45 0 659 224 195 9 chr11 2413981 2414191 -146369281 + MIR SINE MIR 14 262 0 586 211 0 24 chr11 2414550 2414673 -146368799 - L2 LINE L2 -2 3311 3192 188 33 0 33 chr11 2414779 2414809 -146368663 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1991 126 3 21 chr11 2414822 2415107 -146368365 - AluSx SINE Alu -32 280 1 350 163 128 0 chr11 2415109 2415195 -146368277 + MIR SINE MIR 112 208 -54 243 264 0 0 chr11 2415234 2415287 -146368185 - MIR SINE MIR -155 107 55 2381 100 3 0 chr11 2415579 2415890 -146367582 + AluSx SINE Alu 1 312 0 2020 138 7 3 chr11 2416042 2416346 -146367126 + AluSq SINE Alu 1 305 -8 2084 97 38 3 chr11 2416346 2416634 -146366838 + AluSx SINE Alu 1 298 -14 241 290 123 22 chr11 2417040 2417141 -146366331 - MIR SINE MIR -5 257 137 1788 186 3 3 chr11 2417141 2417452 -146366020 - AluJo SINE Alu -1 311 1 241 290 123 22 chr11 2417452 2417488 -146365984 - MIR SINE MIR -125 137 106 691 246 0 0 chr11 2417521 2417647 -146365825 - FLAM_A SINE Alu -7 126 1 214 338 196 0 chr11 2417653 2417786 -146365686 + L2 LINE L2 3106 3264 -8 239 261 185 25 chr11 2418255 2418374 -146365098 - L2 LINE L2 -14 3258 3121 281 309 132 0 chr11 2418469 2418605 -146364867 - MIR3 SINE MIR -10 198 45 2384 105 0 0 chr11 2418613 2418919 -146364553 - AluSc SINE Alu -3 306 1 788 183 15 8 chr11 2419367 2419498 -146363974 + FLAM_A SINE Alu 1 132 -1 195 281 67 11 chr11 2419731 2419820 -146363652 - L2 LINE L2 -160 3112 3019 1143 153 35 83 chr11 2419884 2420075 -146363397 + MER33 DNA MER1_type 13 185 -2400 2363 95 3 0 chr11 2420075 2420381 -146363091 + AluSg SINE Alu 1 307 -3 1143 153 35 83 chr11 2420381 2420502 -146362970 + MER33 DNA MER1_type 185 310 -14 1890 138 0 0 chr11 2420517 2420792 -146362680 + AluSx SINE Alu 1 275 -37 243 289 106 10 chr11 2420939 2421043 -146362429 - MIR SINE MIR -56 206 93 276 273 64 55 chr11 2421068 2421178 -146362294 + L2 LINE L2 3160 3270 -2 314 286 114 71 chr11 2421375 2421630 -146361842 + L1M2 LINE L1 834 1099 -5750 1589 119 171 4 chr11 2422653 2422904 -146360568 + AluSg1 SINE Alu 1 293 -16 751 104 0 0 chr11 2422932 2423028 -146360444 + AluSq/x SINE Alu 41 136 -177 2819 19 0 0 chr11 2423396 2423706 -146359766 + AluYb8 SINE Alu 1 310 -8 1892 107 21 11 chr11 2423712 2424012 -146359460 + AluSq SINE Alu 1 303 0 308 287 151 12 chr11 2424214 2424465 -146359007 + L1ME LINE L1 5501 5786 -335 1106 191 109 4 chr11 2424535 2424765 -146358707 - AluJb SINE Alu -58 254 1 486 263 116 13 chr11 2424868 2424993 -146358479 + MER112 DNA MER1_type 1 112 -148 1343 221 13 39 chr11 2424993 2425305 -146358167 - AluJo SINE Alu -8 304 1 486 263 116 13 chr11 2425305 2425411 -146358061 + MER112 DNA MER1_type 112 256 -4 2251 94 3 0 chr11 2425446 2425744 -146357728 + AluSp SINE Alu 1 299 -14 1577 199 0 0 chr11 2425946 2426237 -146357235 + AluJo SINE Alu 1 291 -21 1853 108 123 0 chr11 2426265 2426525 -146356947 + AluSg SINE Alu 1 292 -8 1996 132 4 0 chr11 2426605 2426923 -146356549 + AluSx SINE Alu 1 319 0 1959 121 3 70 chr11 2428002 2428333 -146355139 + AluSx SINE Alu 1 309 -3 2081 131 13 0 chr11 2428514 2428820 -146354652 + AluSg SINE Alu 1 310 0 2004 154 0 0 chr11 2429027 2429333 -146354139 + AluSx SINE Alu 1 306 -6 1843 141 3 36 chr11 2429544 2429850 -146353622 + AluSx SINE Alu 3 298 -14 2134 113 0 3 chr11 2430052 2430344 -146353128 + AluSg1 SINE Alu 1 291 -18 1804 105 0 0 chr11 2430864 2431092 -146352380 - AluSx SINE Alu -84 228 1 308 302 224 34 chr11 2431498 2431766 -146351706 - HAL1 LINE L1 -766 1741 1423 1839 138 22 0 chr11 2432028 2432304 -146351168 + AluJb SINE Alu 1 282 -30 212 0 36 0 chr11 2432309 2432337 -146351135 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2373 100 0 0 chr11 2432339 2432639 -146350833 + AluSq SINE Alu 2 301 -12 721 201 13 13 chr11 2432706 2432855 -146350617 + MER106A DNA MER1_type 33 181 -55 2283 92 0 13 chr11 2432857 2433172 -146350300 + AluY SINE Alu 1 311 0 1907 113 0 0 chr11 2433328 2433584 -146349888 + AluSq SINE Alu 5 260 -53 287 61 41 0 chr11 2433595 2433644 -146349828 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1981 115 14 21 chr11 2434136 2434445 -146349027 + AluSx SINE Alu 1 307 0 240 128 0 0 chr11 2434521 2434560 -146348912 + L1ME4a LINE L1 6060 6098 -23 900 220 36 0 chr11 2434661 2434829 -146348643 - FAM SINE Alu -1 174 1 403 151 0 0 chr11 2434858 2434911 -146348561 + Alu SINE Alu 2 54 -255 200 106 15 61 chr11 2434933 2434999 -146348473 + (CAAAAA)n Simple_repeat Simple_repeat 1 63 0 1474 200 79 10 chr11 2435818 2436153 -146347319 + L1MB7 LINE L1 5817 6177 -7 1756 139 18 14 chr11 2436166 2436299 -146347173 + AluSx SINE Alu 1 132 -181 2140 74 7 11 chr11 2436299 2436619 -146346853 + AluSg SINE Alu 1 319 0 1756 139 18 14 chr11 2436619 2436796 -146346676 + AluSx SINE Alu 132 313 0 2231 97 0 39 chr11 2436935 2437243 -146346229 - AluSq SINE Alu -17 296 1 288 301 192 13 chr11 2437956 2438112 -146345360 - MIR SINE MIR -30 232 49 1810 122 70 0 chr11 2438390 2438660 -146344812 - AluSx SINE Alu -23 289 1 3503 176 113 47 chr11 2438800 2439406 -146344066 - L1MB7 LINE L1 0 6184 5619 2188 99 10 3 chr11 2439406 2439700 -146343772 - AluSg SINE Alu -14 296 1 3503 176 113 47 chr11 2439700 2440018 -146343454 - L1MB7 LINE L1 -565 5619 5323 936 213 6 6 chr11 2440018 2440187 -146343285 - FAM SINE Alu -6 169 1 3503 176 113 47 chr11 2440187 2440340 -146343132 - L1MB7 LINE L1 -861 5323 5182 2193 122 0 7 chr11 2440340 2440643 -146342829 + AluSx SINE Alu 1 301 -11 3503 176 113 47 chr11 2440643 2440915 -146342557 - L1MB7 LINE L1 -1002 5182 4929 1665 173 10 10 chr11 2440915 2441216 -146342256 + AluJb SINE Alu 1 301 -11 3503 176 113 47 chr11 2441216 2441230 -146342242 - L1MB7 LINE L1 -1255 4929 4917 2169 126 3 3 chr11 2441230 2441540 -146341932 + AluSx SINE Alu 1 310 -2 3503 176 113 47 chr11 2441540 2441599 -146341873 - L1MB7 LINE L1 -1267 4917 4663 715 214 81 39 chr11 2441592 2441782 -146341690 - L1MB7 LINE L1 -2162 3984 3781 * 2105 120 7 0 chr11 2441782 2442083 -146341389 - AluSg SINE Alu -7 303 1 715 214 81 39 chr11 2442083 2442126 -146341346 - L1MB7 LINE L1 -2365 3781 3741 1853 143 37 14 chr11 2442149 2442443 -146341029 - AluSx SINE Alu -11 301 1 242 286 13 91 chr11 2442817 2442962 -146340510 - MIR3 SINE MIR -52 156 22 2429 77 0 0 chr11 2442962 2443260 -146340212 + AluY SINE Alu 1 298 -13 222 128 0 0 chr11 2443575 2443614 -146339858 + (A)n Simple_repeat Simple_repeat 1 39 0 1421 196 3 35 chr11 2443965 2444276 -146339196 + AluJo SINE Alu 1 301 -11 816 151 0 0 chr11 2444301 2444420 -146339052 + FRAM SINE Alu 50 168 -8 1028 174 117 68 chr11 2444466 2444585 -146338887 + AluJb SINE Alu 1 113 -199 2089 119 3 7 chr11 2444585 2444879 -146338593 + AluSg1 SINE Alu 1 293 -16 1028 174 117 68 chr11 2444879 2444890 -146338582 + AluJb SINE Alu 113 122 -190 1825 117 80 4 chr11 2444890 2445164 -146338308 + AluSq SINE Alu 6 300 -13 1028 174 117 68 chr11 2445164 2445296 -146338176 + AluJb SINE Alu 122 277 -35 243 0 0 0 chr11 2445309 2445336 -146338136 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 258 32 0 0 chr11 2445370 2445401 -146338071 + (TG)n Simple_repeat Simple_repeat 2 32 0 635 262 116 66 chr11 2445586 2445678 -146337794 + L2 LINE L2 2458 2544 -769 2087 150 7 0 chr11 2445678 2445985 -146337487 - AluSx SINE Alu -3 309 1 635 262 116 66 chr11 2445985 2446568 -146336904 + L2 LINE L2 2544 3222 -91 190 0 32 32 chr11 2447055 2447086 -146336386 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 324 158 174 31 chr11 2447251 2447358 -146336114 + L1ME3A LINE L1 5790 5910 -260 1880 152 14 0 chr11 2447360 2447650 -146335822 + AluSg SINE Alu 3 296 -14 1059 162 6 6 chr11 2447650 2447829 -146335643 + AluSg/x SINE Alu 134 312 0 1508 184 60 14 chr11 2447942 2448224 -146335248 + AluJb SINE Alu 1 295 -17 2254 105 0 43 chr11 2448940 2449263 -146334209 + AluSg SINE Alu 1 309 -1 2034 100 64 0 chr11 2449265 2449546 -146333926 + AluSx SINE Alu 1 299 -13 2254 114 0 19 chr11 2450070 2450387 -146333085 + AluSq SINE Alu 1 311 -2 2111 136 0 10 chr11 2450944 2451246 -146332226 - AluJb SINE Alu -10 302 4 2340 81 0 29 chr11 2451307 2451616 -146331856 - AluY SINE Alu -11 300 1 2476 82 0 0 chr11 2452167 2452470 -146331002 + AluSg SINE Alu 2 304 -6 2548 74 0 3 chr11 2452742 2453054 -146330418 + AluY SINE Alu 1 311 0 319 308 63 57 chr11 2453128 2453287 -146330185 + MER117 DNA MER1_type 38 197 0 21 0 0 0 chr11 2454156 2454177 -146329295 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 2454329 2454354 -146329118 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 2454633 2454654 -146328818 + AT_rich Low_complexity Low_complexity 1 21 0 1523 115 115 63 chr11 2455405 2455692 -146327780 - AluSg SINE Alu -8 302 1 1539 191 13 7 chr11 2455943 2456241 -146327231 + AluJb SINE Alu 1 300 -12 2427 77 3 0 chr11 2456252 2456550 -146326922 + AluSp SINE Alu 1 299 -14 1107 86 0 14 chr11 2456738 2456877 -146326595 + AluSq/x SINE Alu 1 137 -175 356 266 69 58 chr11 2456901 2457074 -146326398 - MER5B DNA MER1_type -1 177 3 2148 100 0 39 chr11 2457154 2457464 -146326008 + AluY SINE Alu 14 311 0 1605 196 0 50 chr11 2457546 2457690 -146325782 + AluJb SINE Alu 1 151 -161 1796 123 0 0 chr11 2457690 2457925 -146325547 + AluSx SINE Alu 1 235 -77 1605 196 0 50 chr11 2457925 2458102 -146325370 + AluJb SINE Alu 151 306 -6 259 262 0 0 chr11 2458197 2458258 -146325214 + L1MC5 LINE L1 7830 7890 -71 198 0 0 0 chr11 2458643 2458665 -146324807 + (TTCTC)n Simple_repeat Simple_repeat 3 24 0 210 37 0 0 chr11 2459852 2459879 -146323593 + (T)n Simple_repeat Simple_repeat 1 27 0 1228 186 97 14 chr11 2460001 2460280 -146323192 - AluJo SINE Alu -6 306 5 815 119 9 0 chr11 2461303 2461412 -146322060 - AluSg SINE Alu -200 110 1 2168 109 7 0 chr11 2461516 2461821 -146321651 + AluSq SINE Alu 1 307 0 650 257 39 6 chr11 2461857 2462036 -146321436 + MER20 DNA MER1_type 34 218 -1 2126 119 7 19 chr11 2462140 2462450 -146321022 - AluSx SINE Alu -1 311 6 1498 224 14 0 chr11 2462455 2462741 -146320731 - AluJb SINE Alu -22 290 1 1990 146 3 19 chr11 2462987 2463295 -146320177 + AluJb SINE Alu 1 303 -9 233 157 0 59 chr11 2463409 2463460 -146320012 - L2 LINE L2 -1 3271 3224 259 197 0 145 chr11 2464561 2464637 -146318835 + MIR3 SINE MIR 112 176 -32 216 171 0 24 chr11 2465311 2465352 -146318120 + (CCG)n Simple_repeat Simple_repeat 3 42 0 206 171 0 105 chr11 2465514 2465590 -146317882 + G-rich Low_complexity Low_complexity 5 72 0 2367 93 0 3 chr11 2466153 2466455 -146317017 - AluSx SINE Alu -7 305 5 2199 85 7 29 chr11 2466464 2466770 -146316702 - AluSx SINE Alu -13 299 1 1749 133 4 12 chr11 2467084 2467340 -146316132 + AluSq SINE Alu 1 254 -59 1557 192 17 10 chr11 2467515 2467807 -146315665 + AluJb SINE Alu 1 294 -18 2416 64 14 0 chr11 2468071 2468367 -146315105 - AluSq SINE Alu -13 300 1 222 238 155 0 chr11 2468367 2468451 -146315021 + MIR SINE MIR 163 259 -3 21 0 0 0 chr11 2469299 2469320 -146314152 + GC_rich Low_complexity Low_complexity 1 21 0 789 247 22 35 chr11 2469700 2469927 -146313545 + MIR SINE MIR 33 256 -6 417 190 46 51 chr11 2470074 2470205 -146313267 - MIR3 SINE MIR -14 194 60 832 222 6 6 chr11 2472933 2473095 -146310377 + FRAM SINE Alu 1 158 -18 269 350 80 25 chr11 2473652 2473852 -146309620 + L2 LINE L2 2977 3187 -85 1001 175 0 18 chr11 2473870 2474041 -146309431 - AluJo SINE Alu -13 299 132 1845 160 3 3 chr11 2474056 2474338 -146309134 - AluJb SINE Alu -30 282 1 313 291 12 0 chr11 2474784 2474870 -146308602 - L3 LINE CR1 -84 1493 1407 2299 119 0 0 chr11 2474899 2475211 -146308261 - AluSx SINE Alu 0 312 1 790 154 0 22 chr11 2475231 2475367 -146308105 - AluJo SINE Alu -169 133 1 1133 77 11 17 chr11 2475374 2475555 -146307917 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1529 145 0 4 chr11 2475581 2475808 -146307664 - AluSg/x SINE Alu -1 311 86 1868 97 4 8 chr11 2475959 2476207 -146307265 - AluSx SINE Alu -8 304 58 541 312 49 30 chr11 2476207 2476473 -146306999 - L3 LINE CR1 -379 1198 928 255 189 19 0 chr11 2477603 2477656 -146305816 + MIR SINE MIR 112 165 -97 1882 162 10 10 chr11 2478421 2478729 -146304743 + AluJb SINE Alu 4 311 -1 1892 93 0 16 chr11 2478734 2478981 -146304491 + AluSx SINE Alu 1 243 -69 204 214 29 57 chr11 2479501 2479571 -146303901 - L2 LINE L2 -182 3090 3023 188 289 0 0 chr11 2479659 2479704 -146303768 - L2 LINE L2 -569 2745 2701 1219 149 9 33 chr11 2479708 2479923 -146303549 - AluJb SINE Alu -18 294 85 248 321 102 27 chr11 2479924 2480111 -146303361 - L2 LINE L2 -601 2713 2513 234 128 0 0 chr11 2480480 2480519 -146302953 + (TG)n Simple_repeat Simple_repeat 2 40 0 2068 107 68 0 chr11 2481050 2481331 -146302141 + AluSq SINE Alu 1 300 -13 1077 160 24 0 chr11 2481331 2481500 -146301972 + AluSg/x SINE Alu 134 306 -6 626 209 31 0 chr11 2481501 2481630 -146301842 - MIR SINE MIR -82 180 48 2174 102 7 3 chr11 2482130 2482423 -146301049 + AluSx SINE Alu 2 295 -17 1609 159 53 40 chr11 2482433 2482734 -146300738 + AluJb SINE Alu 1 305 -7 2681 40 0 0 chr11 2482735 2483032 -146300440 + AluY SINE Alu 1 297 -14 1517 157 132 18 chr11 2483041 2483321 -146300151 + AluJb SINE Alu 1 312 0 2184 126 7 0 chr11 2483677 2483987 -146299485 - AluSx SINE Alu 0 312 1 283 301 8 38 chr11 2486592 2486725 -146296747 + MIR3 SINE MIR 53 181 -27 976 266 40 4 chr11 2489040 2489275 -146294197 + MIR SINE MIR 2 248 -14 2577 54 10 0 chr11 2489275 2489572 -146293900 - AluY SINE Alu -11 300 1 976 266 40 4 chr11 2489572 2489588 -146293884 + MIR SINE MIR 248 262 0 2320 113 7 0 chr11 2489902 2490203 -146293269 - AluSx SINE Alu -9 303 1 2444 81 0 7 chr11 2490403 2490699 -146292773 - AluSg SINE Alu -16 294 1 633 244 42 63 chr11 2490856 2491025 -146292447 + MIR SINE MIR 18 182 -80 2113 139 0 3 chr11 2491025 2491327 -146292145 + AluJo SINE Alu 1 301 -11 633 244 42 63 chr11 2491327 2491395 -146292077 + MIR SINE MIR 182 250 -12 200 216 0 0 chr11 2492066 2492103 -146291369 + (TG)n Simple_repeat Simple_repeat 1 37 0 396 301 48 2 chr11 2492188 2492320 -146291152 + MIR SINE MIR 21 156 -74 465 244 125 24 chr11 2492846 2493014 -146290458 - MIR SINE MIR -57 205 21 367 202 19 77 chr11 2493041 2493145 -146290327 + MIR SINE MIR 68 165 -97 662 147 123 68 chr11 2493558 2493721 -146289751 + FAM SINE Alu 1 172 -3 1873 138 12 63 chr11 2493752 2494071 -146289401 - AluJb SINE Alu -9 303 1 601 245 18 31 chr11 2494201 2494364 -146289108 + MIR SINE MIR 41 201 -61 200 331 107 8 chr11 2494437 2494558 -146288914 + L2 LINE L2 2898 3030 -242 1978 130 0 0 chr11 2494608 2494870 -146288602 - AluSx SINE Alu -46 266 5 185 240 140 40 chr11 2496047 2496147 -146287325 + L2 LINE L2 2932 3041 -231 180 0 0 0 chr11 2496633 2496653 -146286819 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2370 99 0 13 chr11 2496868 2497180 -146286292 + AluSx SINE Alu 3 310 -2 2360 105 0 13 chr11 2497412 2497727 -146285745 + AluSx SINE Alu 1 311 -1 369 117 0 0 chr11 2500258 2500318 -146283154 + (CA)n Simple_repeat Simple_repeat 1 60 0 297 51 0 0 chr11 2500384 2500423 -146283049 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr11 2501522 2501552 -146281920 + GC_rich Low_complexity Low_complexity 1 30 0 203 95 48 0 chr11 2501776 2501818 -146281654 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1486 201 8 0 chr11 2552811 2553079 -146230393 + AluJo SINE Alu 5 274 -38 338 304 199 0 chr11 2553320 2553481 -146229991 - MIR SINE MIR -9 253 61 216 267 93 23 chr11 2554092 2554178 -146229294 + L2 LINE L2 3169 3260 -12 23 0 0 0 chr11 2554283 2554306 -146229166 + AT_rich Low_complexity Low_complexity 1 23 0 188 268 18 0 chr11 2554315 2554371 -146229101 - MIR SINE MIR -21 241 185 21 0 0 0 chr11 2554375 2554396 -146229076 + AT_rich Low_complexity Low_complexity 1 21 0 466 274 43 0 chr11 2554422 2554539 -146228933 + L2 LINE L2 3187 3308 -5 363 239 197 28 chr11 2554569 2554711 -146228761 - MIR SINE MIR -84 178 13 13439 24 1 2 chr11 2554834 2556387 -146227085 - L1P LINE L1 -1043 5103 3553 1863 88 4 0 chr11 2556383 2556632 -146226840 - L1P LINE L1 -5671 475 226 * 1002 171 64 0 chr11 2556758 2556945 -146226527 + L1MB5 LINE L1 5968 6166 -8 1726 193 7 0 chr11 2557096 2557392 -146226080 + AluJb SINE Alu 3 300 -12 731 278 179 34 chr11 2557425 2557871 -146225601 - MLT1J LTR MaLR 0 511 1 2214 112 3 3 chr11 2557916 2558210 -146225262 + AluSq SINE Alu 1 294 -19 206 227 0 23 chr11 2558277 2558321 -146225151 + GA-rich Low_complexity Low_complexity 4 46 0 759 258 32 24 chr11 2558893 2559141 -146224331 - MIR SINE MIR -1 261 12 430 293 50 14 chr11 2559409 2559549 -146223923 + MIR SINE MIR 3 147 -115 2595 68 0 0 chr11 2559685 2560071 -146223401 + AluY SINE Alu 1 386 0 201 147 0 0 chr11 2560419 2560453 -146223019 + (CA)n Simple_repeat Simple_repeat 1 34 0 2261 114 0 3 chr11 2560520 2560819 -146222653 + AluSx SINE Alu 1 298 -14 274 269 0 13 chr11 2560949 2561027 -146222445 - L2 LINE L2 0 3272 3196 419 223 79 114 chr11 2561146 2561348 -146222124 - LTR67 LTR ERVL -9 548 354 786 257 31 9 chr11 2561928 2562150 -146221322 - MIR SINE MIR -2 260 34 185 232 152 18 chr11 2562613 2562725 -146220747 + L2 LINE L2 2842 2968 -304 313 264 79 36 chr11 2563542 2563682 -146219790 - MIR3 SINE MIR -42 166 21 237 235 98 10 chr11 2564199 2564301 -146219171 - MIR SINE MIR -4 258 148 12806 95 6 8 chr11 2564413 2566209 -146217263 - L1P LINE L1 -4355 1791 1 1023 207 14 33 chr11 2566414 2566463 -146217009 + MER58A DNA MER1_type 4 52 -2368 1628 158 62 11 chr11 2566463 2566735 -146216737 - AluJo SINE Alu -26 286 1 1023 207 14 33 chr11 2566735 2566898 -146216574 + MER58A DNA MER1_type 52 212 -12 199 409 36 0 chr11 2566900 2567010 -146216462 + L2 LINE L2 2868 2981 -291 438 243 181 33 chr11 2567472 2567682 -146215790 + MIR SINE MIR 2 242 -20 491 60 0 0 chr11 2568607 2568674 -146214798 - AluY SINE Alu -4 305 239 1737 77 0 0 chr11 2568674 2568882 -146214590 - AluY SINE Alu -103 208 1 2419 82 0 0 chr11 2569800 2570094 -146213378 - AluY SINE Alu -17 294 1 269 274 69 20 chr11 2570104 2570206 -146213266 + MIR SINE MIR 124 230 -32 1799 257 75 17 chr11 2570227 2571003 -146212469 - L2 LINE L2 -1 3312 2488 520 264 54 0 chr11 2571007 2571155 -146212317 - L2 LINE L2 -968 2346 2191 3237 110 15 25 chr11 2571372 2571892 -146211580 + L1MA6 LINE L1 5768 6282 -18 301 115 0 0 chr11 2571915 2571967 -146211505 - AluJo SINE Alu 0 302 251 1200 175 0 5 chr11 2571967 2572167 -146211305 - AluJo SINE Alu -113 199 1 46 33 0 0 chr11 2572196 2572256 -146211216 + AT_rich Low_complexity Low_complexity 1 60 0 1418 273 21 40 chr11 2572642 2572894 -146210578 - L2 LINE L2 -275 3038 2783 2198 102 3 38 chr11 2572894 2573072 -146210400 - AluSp SINE Alu -11 302 138 2951 6 0 9 chr11 2573072 2573391 -146210081 - AluYb8 SINE Alu -2 316 1 2198 102 3 38 chr11 2573391 2573525 -146209947 - AluSp SINE Alu -175 138 1 1418 273 21 40 chr11 2573525 2573798 -146209674 - L2 LINE L2 -530 2783 2524 1388 129 19 5 chr11 2574355 2574564 -146208908 + L1P3 LINE L1 10 221 -6240 327 267 199 17 chr11 2574963 2575172 -146208300 + MIR SINE MIR 10 247 -15 1693 133 13 63 chr11 2575559 2575780 -146207692 - MLT1A1 LTR MaLR 0 365 161 2396 100 0 0 chr11 2575780 2576091 -146207381 - AluY SINE Alu 0 311 1 1693 133 13 63 chr11 2576091 2576170 -146207302 - MLT1A1 LTR MaLR -204 161 80 999 136 7 7 chr11 2576176 2576331 -146207141 - LTR32 LTR ERVL 0 471 317 1879 182 32 15 chr11 2576410 2576751 -146206721 - LTR32 LTR ERVL -110 361 15 541 152 0 0 chr11 2576751 2576830 -146206642 - MLT1A1 LTR MaLR -295 79 1 272 277 54 36 chr11 2577059 2577171 -146206301 + L2 LINE L2 3158 3271 -1 542 283 61 100 chr11 2577204 2577565 -146205907 + L2 LINE L2 2924 3270 -2 487 250 123 26 chr11 2578113 2578315 -146205157 + MIR SINE MIR 38 262 0 2129 111 35 0 chr11 2579240 2579528 -146203944 + AluSx SINE Alu 1 298 -14 223 313 76 8 chr11 2579868 2579999 -146203473 - MIR SINE MIR -11 251 112 1876 154 0 39 chr11 2580093 2580399 -146203073 - AluJb SINE Alu -18 294 1 2398 126 3 15 chr11 2580699 2581040 -146202432 - MER1B DNA MER1_type 0 337 1 850 250 9 4 chr11 2581328 2581612 -146201860 - MIR SINE MIR -13 249 1 2422 94 3 0 chr11 2582248 2582555 -146200917 + AluSg SINE Alu 1 308 -2 263 340 108 30 chr11 2582683 2583015 -146200457 - L2 LINE L2 -395 2919 2562 481 306 128 37 chr11 2583131 2583726 -146199746 - L2 LINE L2 -979 2335 1687 271 349 0 0 chr11 2584594 2584680 -146198792 + L2 LINE L2 3186 3271 -1 351 0 0 0 chr11 2584789 2584828 -146198644 + (CA)n Simple_repeat Simple_repeat 2 40 0 235 167 0 62 chr11 2585287 2585335 -146198137 + MER58B DNA MER1_type 47 91 -250 1348 176 43 4 chr11 2586589 2586844 -146196628 + MER58B DNA MER1_type 76 340 -1 4290 154 18 72 chr11 2586868 2587778 -146195694 - L1MB8 LINE L1 -6 6172 5313 1812 174 31 3 chr11 2587796 2588123 -146195349 - L1PA16 LINE L1 -9 6157 5822 767 156 0 0 chr11 2588143 2588271 -146195201 - FRAM SINE Alu 0 40 1 355 316 151 34 chr11 2588642 2588993 -146194479 + L3 LINE CR1 948 1339 -238 1638 176 56 0 chr11 2589109 2589405 -146194067 + AluJb SINE Alu 1 311 0 2313 92 3 13 chr11 2590019 2590323 -146193149 - AluSq SINE Alu -12 301 1 2041 126 11 0 chr11 2590651 2590937 -146192535 + AluSx SINE Alu 1 289 -23 247 167 0 0 chr11 2591340 2591382 -146192090 + L3 LINE CR1 1533 1574 -3 264 231 0 46 chr11 2591702 2591767 -146191705 - MIR SINE MIR -64 144 83 429 221 65 26 chr11 2592528 2592682 -146190790 + MIR SINE MIR 79 238 -24 843 194 159 9 chr11 2593009 2593236 -146190236 + MIR SINE MIR 2 262 0 254 254 0 0 chr11 2593766 2593829 -146189643 - L1M4 LINE L1 -875 5271 5209 2487 53 3 10 chr11 2594130 2594433 -146189039 + AluY SINE Alu 1 301 -10 1314 223 70 76 chr11 2594436 2594640 -146188832 - L1M4 LINE L1 -1059 5087 4883 2182 134 0 0 chr11 2594640 2594939 -146188533 + AluSx SINE Alu 1 299 -13 1314 223 70 76 chr11 2594939 2595297 -146188175 - L1M4 LINE L1 -1263 4883 4525 227 30 0 30 chr11 2595297 2595330 -146188142 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 524 137 253 0 chr11 2595336 2595431 -146188041 - FLAM_C SINE Alu -14 119 1 1314 223 70 76 chr11 2595431 2595502 -146187970 - L1M4 LINE L1 -1626 4520 4450 2548 78 0 0 chr11 2595502 2595811 -146187661 - AluY SINE Alu -2 309 1 1314 223 70 76 chr11 2595811 2595882 -146187590 - L1M4 LINE L1 -1696 4450 4378 1994 234 81 47 chr11 2595882 2596428 -146187044 - Charlie7 DNA MER1_type -1125 1487 903 2209 100 0 0 chr11 2596428 2596736 -146186736 + AluSc SINE Alu 1 308 0 1994 234 81 47 chr11 2596736 2596978 -146186494 - Charlie7 DNA MER1_type -1709 903 671 586 197 87 104 chr11 2596995 2597178 -146186294 + MER58A DNA MER1_type 45 224 0 1185 268 138 53 chr11 2597181 2597804 -146185668 - Charlie7 DNA MER1_type -1936 676 1 1228 42 24 0 chr11 2598274 2598439 -146185033 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 211 318 16 0 chr11 2598463 2598526 -146184946 + MIR SINE MIR 76 139 -69 2304 95 0 32 chr11 2598984 2599299 -146184173 + AluSx SINE Alu 1 305 -7 1022 166 37 0 chr11 2599958 2600121 -146183351 + AluJo SINE Alu 1 169 -143 1451 85 0 40 chr11 2600181 2600380 -146183092 + AluSg/x SINE Alu 105 295 -15 214 191 107 71 chr11 2600721 2600805 -146182667 - L2 LINE L2 0 3272 3186 718 178 0 0 chr11 2600985 2601092 -146182380 + FLAM_C SINE Alu 24 130 -13 192 47 47 23 chr11 2601839 2601882 -146181590 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 264 0 19 chr11 2601971 2602024 -146181448 - L2 LINE L2 -8 3264 3213 924 201 126 10 chr11 2602025 2602224 -146181248 + MER58A DNA MER1_type 2 223 -1 462 183 139 17 chr11 2602233 2602348 -146181124 + L1ME3 LINE L1 6027 6155 -7 2018 125 27 10 chr11 2602453 2602748 -146180724 + AluSx SINE Alu 7 306 -6 23 33 0 0 chr11 2602748 2602778 -146180694 + AT_rich Low_complexity Low_complexity 1 30 0 1254 100 0 0 chr11 2603310 2603470 -146180002 - AluSg/x SINE Alu -16 294 135 253 291 35 0 chr11 2603808 2603894 -146179578 - MIR SINE MIR -107 155 67 279 213 17 43 chr11 2604531 2604620 -146178852 - HERV16 LTR ERVL -2848 2148 2082 1222 131 159 19 chr11 2604655 2604901 -146178571 + L1MB7 LINE L1 5839 6118 -66 776 214 0 0 chr11 2604902 2605033 -146178439 + FLAM_C SINE Alu 2 132 -11 1539 188 3 14 chr11 2605071 2605358 -146178114 - AluJo SINE Alu -20 292 9 2373 76 3 0 chr11 2605657 2605946 -146177526 + AluSq SINE Alu 1 290 -23 1232 255 79 44 chr11 2606412 2606598 -146176874 + MLT1K LTR MaLR 3 181 -295 1775 140 12 64 chr11 2606598 2606927 -146176545 - AluJb SINE Alu 0 312 1 1232 255 79 44 chr11 2606927 2607195 -146176277 + MLT1K LTR MaLR 181 473 -3 2033 155 3 0 chr11 2607428 2607732 -146175740 + AluJb SINE Alu 1 305 -7 2200 87 13 23 chr11 2608274 2608410 -146175062 + AluSx SINE Alu 1 137 -175 2305 93 7 3 chr11 2608410 2608711 -146174761 + AluSq SINE Alu 1 302 -11 2200 87 13 23 chr11 2608711 2608874 -146174598 + AluSx SINE Alu 137 297 -15 4234 162 50 72 chr11 2608923 2609069 -146174403 + L1MB5 LINE L1 4967 5115 -1065 188 83 0 28 chr11 2609069 2609105 -146174367 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 144 4 11 chr11 2609111 2609381 -146174091 - AluSx SINE Alu -38 274 7 4234 162 50 72 chr11 2609381 2609464 -146174008 + L1MB5 LINE L1 5120 5203 -977 2524 56 0 7 chr11 2609464 2609767 -146173705 + AluY SINE Alu 1 301 -10 753 216 0 8 chr11 2609770 2609904 -146173568 + FLAM_C SINE Alu 1 133 0 4234 162 50 72 chr11 2609904 2610421 -146173051 + L1MB5 LINE L1 5205 5547 -633 2199 109 3 0 chr11 2610421 2610715 -146172757 + AluSc SINE Alu 1 295 -14 4234 162 50 72 chr11 2610715 2611335 -146172137 + L1MB5 LINE L1 5547 6180 0 36261 85 12 18 chr11 2611466 2614441 -146169031 + L1PA6 LINE L1 240 3163 -2991 2430 76 0 10 chr11 2614441 2614755 -146168717 + AluY SINE Alu 1 311 0 36261 85 12 18 chr11 2614755 2617730 -146165742 + L1PA6 LINE L1 3163 6154 0 468 137 86 26 chr11 2617760 2617877 -146165595 + MIR SINE MIR 69 192 -70 236 177 89 137 chr11 2617910 2617977 -146165495 + Charlie8 DNA MER1_type 36 96 -2321 2036 148 0 0 chr11 2617977 2618275 -146165197 + AluSx SINE Alu 1 298 -14 236 177 89 137 chr11 2618275 2618331 -146165141 + Charlie8 DNA MER1_type 96 153 -2264 1652 192 0 7 chr11 2618333 2618604 -146164868 + AluJb SINE Alu 1 269 -43 903 143 8 0 chr11 2618823 2618949 -146164523 - FLAM_A SINE Alu -2 131 5 254 309 52 10 chr11 2618981 2619078 -146164394 + L2 LINE L2 3122 3222 -50 3319 256 63 23 chr11 2619503 2620404 -146163068 + L1M4b LINE L1 11 947 -5912 1285 167 0 39 chr11 2620404 2620465 -146163007 + AluJo SINE Alu 84 146 -166 301 93 37 0 chr11 2620465 2620519 -146162953 + L1PA8 LINE L1 6117 6172 0 1285 167 0 39 chr11 2620519 2620690 -146162782 + AluJo SINE Alu 146 307 -5 2873 204 84 44 chr11 2620691 2621075 -146162397 + L1M4b LINE L1 945 1312 -5647 224 30 30 0 chr11 2621075 2621108 -146162364 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2873 204 84 44 chr11 2621108 2621604 -146161868 + L1M4b LINE L1 1312 1787 -5172 1748 148 7 4 chr11 2621604 2621874 -146161598 + AluSx SINE Alu 37 307 -5 2873 204 84 44 chr11 2621874 2622352 -146161120 + L1M4b LINE L1 1787 2369 -4590 1227 259 100 92 chr11 2622352 2622667 -146160805 - L2 LINE L2 -31 3282 2971 2187 108 3 0 chr11 2622667 2622954 -146160518 - AluSx SINE Alu -24 288 1 1227 259 100 92 chr11 2622954 2623581 -146159891 - L2 LINE L2 -342 2971 2327 1509 186 13 16 chr11 2623581 2623888 -146159584 + L1M4 LINE L1 5027 5332 -814 1736 167 20 26 chr11 2623888 2624194 -146159278 - AluSx SINE Alu -6 306 3 24 32 0 0 chr11 2624202 2624233 -146159239 + AT_rich Low_complexity Low_complexity 1 31 0 1752 110 13 77 chr11 2624233 2624348 -146159124 + L1P4 LINE L1 5476 5597 -569 2602 57 3 6 chr11 2624348 2624662 -146158810 - AluSp SINE Alu 0 313 1 1752 110 13 77 chr11 2624662 2624846 -146158626 + L1P4 LINE L1 5597 5756 -410 1000 105 0 26 chr11 2624858 2625011 -146158461 + AluJo SINE Alu 1 149 -163 21 0 0 0 chr11 2625133 2625154 -146158318 + AT_rich Low_complexity Low_complexity 1 21 0 1599 173 26 4 chr11 2625412 2625683 -146157789 - AluJo SINE Alu -30 282 6 311 216 137 20 chr11 2626111 2626213 -146157259 - MIR SINE MIR -27 235 122 827 160 30 15 chr11 2626445 2626576 -146156896 + FLAM_A SINE Alu 1 133 0 212 0 36 0 chr11 2626603 2626631 -146156841 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1211 128 35 66 chr11 2626690 2626916 -146156556 - MER20 DNA MER1_type 0 219 1 804 123 0 0 chr11 2626957 2627071 -146156401 - AluSg SINE Alu -23 289 176 803 114 0 0 chr11 2627071 2627176 -146156296 - AluSg SINE Alu -205 105 1 2053 149 0 9 chr11 2627963 2628278 -146155194 - AluJo SINE Alu 0 312 1 261 367 43 7 chr11 2628278 2628417 -146155055 + MIR SINE MIR 92 235 -27 252 336 35 9 chr11 2628454 2628570 -146154902 - MIR SINE MIR -27 235 117 567 161 108 0 chr11 2628625 2628755 -146154717 + L1MB7 LINE L1 6041 6184 0 1957 144 0 13 chr11 2628877 2629182 -146154290 - AluSx SINE Alu -11 301 1 220 246 0 0 chr11 2629766 2629811 -146153661 + CT-rich Low_complexity Low_complexity 5 52 -9 2222 112 7 0 chr11 2629811 2630114 -146153358 - AluSq SINE Alu -8 305 1 220 246 0 0 chr11 2630114 2630125 -146153347 + CT-rich Low_complexity Low_complexity 51 61 0 352 296 148 0 chr11 2630639 2630754 -146152718 + MIR SINE MIR 23 154 -108 287 333 8 0 chr11 2631236 2631368 -146152104 + (TG)n Simple_repeat Simple_repeat 2 134 0 452 308 39 19 chr11 2632491 2632699 -146150773 - L2 LINE L2 -196 3076 2865 30345 30 4 1 chr11 2632854 2637188 -146146284 + L1PA3 LINE L1 1811 6155 0 2602 119 45 31 chr11 2637467 2637847 -146145625 + MSTA LTR MaLR 1 389 -39 1954 144 10 13 chr11 2637847 2638159 -146145313 - AluSx SINE Alu -1 311 1 2602 119 45 31 chr11 2638159 2638197 -146145275 + MSTA LTR MaLR 389 425 -3 1771 135 114 3 chr11 2639500 2639797 -146143675 + MER7A DNA MER2_type 2 329 -17 3565 139 11 20 chr11 2639803 2640363 -146143109 - MER6A DNA MER2_type -50 555 1 2299 74 7 13 chr11 2640454 2640752 -146142720 + AluY SINE Alu 1 296 -15 2148 108 17 3 chr11 2640775 2641097 -146142375 + AluSx SINE Alu 1 312 0 190 246 53 18 chr11 2641473 2641530 -146141942 + L2 LINE L2 3004 3062 -210 858 140 22 0 chr11 2641938 2642074 -146141398 + AluJb SINE Alu 1 139 -173 233 318 149 0 chr11 2642278 2642385 -146141087 + L2 LINE L2 3191 3313 0 350 303 114 18 chr11 2642892 2643091 -146140381 + MIR3 SINE MIR 2 220 -42 1124 231 12 16 chr11 2643366 2643609 -146139863 + MIR SINE MIR 12 253 -9 1997 97 6 74 chr11 2643613 2643924 -146139548 + AluSx SINE Alu 1 290 -22 314 295 66 41 chr11 2643962 2644039 -146139433 + L2 LINE L2 3142 3225 -47 2423 155 77 10 chr11 2644039 2644440 -146139032 - MSTA LTR MaLR 0 428 1 314 295 66 41 chr11 2644440 2644484 -146138988 + L2 LINE L2 3225 3266 -6 418 302 26 0 chr11 2644520 2644636 -146138836 + MIR SINE MIR 75 193 -69 449 267 17 33 chr11 2645119 2645287 -146138185 + MIR3 SINE MIR 23 186 -22 305 283 0 33 chr11 2645287 2645379 -146138093 + MIR3 SINE MIR 83 171 -37 375 302 142 12 chr11 2645632 2645801 -146137671 + MIR3 SINE MIR 1 191 -17 512 299 92 5 chr11 2646073 2646257 -146137215 + MIR SINE MIR 29 228 -34 201 301 14 14 chr11 2646797 2646870 -146136602 - MIR SINE MIR -98 164 92 216 176 0 0 chr11 2647158 2647192 -146136280 - L2 LINE L2 -14 3299 3266 798 186 37 12 chr11 2647275 2647436 -146136036 - MIR SINE MIR -17 245 81 622 301 37 50 chr11 2647423 2647722 -146135750 - L2 LINE L2 -149 3123 2829 * 2347 172 161 47 chr11 2647987 2648452 -146135020 - L1MD2 LINE L1 -1 6358 5805 2428 84 0 0 chr11 2648452 2648749 -146134723 - AluSg SINE Alu -13 297 1 2347 172 161 47 chr11 2648749 2648898 -146134574 - L1MD2 LINE L1 -554 5805 5674 311 339 42 52 chr11 2648899 2648944 -146134528 - L2 LINE L2 -563 2751 2707 1934 156 7 13 chr11 2648944 2649245 -146134227 - AluJo SINE Alu -13 299 1 311 339 42 52 chr11 2649245 2649391 -146134081 - L2 LINE L2 -607 2707 2562 1738 134 76 0 chr11 2650445 2650728 -146132744 + AluJb SINE Alu 1 303 0 201 312 43 35 chr11 2651857 2651998 -146131474 + MIR3 SINE MIR 50 191 -17 1884 176 23 0 chr11 2652087 2652388 -146131084 - AluJb SINE Alu -4 308 1 517 267 74 57 chr11 2652663 2652959 -146130513 - L2 LINE L2 -1 3312 3012 2924 190 58 18 chr11 2653071 2653697 -146129775 + L1ME2 LINE L1 5504 6154 -10 660 201 44 87 chr11 2653711 2653953 -146129519 + L1ME3 LINE L1 5915 6154 -12 648 158 17 0 chr11 2654010 2654130 -146129342 - MER5B DNA MER1_type -56 122 1 47 0 0 0 chr11 2654205 2654252 -146129220 + AT_rich Low_complexity Low_complexity 1 47 0 337 157 0 0 chr11 2654252 2654303 -146129169 - MER66A LTR ERV1 -140 338 288 363 323 16 0 chr11 2654361 2654485 -146128987 - L2 LINE L2 -468 2846 2721 222 284 203 42 chr11 2654630 2654940 -146128532 - L2 LINE L2 -800 2514 2155 1016 184 6 6 chr11 2654990 2655164 -146128308 + AluJb SINE Alu 138 311 -1 737 193 42 31 chr11 2655211 2655403 -146128069 - L2 LINE L2 0 3313 3120 2063 115 0 7 chr11 2655566 2655869 -146127603 - AluSg SINE Alu 0 301 1 1429 199 10 34 chr11 2655886 2656177 -146127295 - AluJo SINE Alu -28 284 1 2339 93 0 0 chr11 2656187 2656476 -146126996 - AluSc SINE Alu -20 289 1 748 185 15 0 chr11 2656540 2656670 -146126802 + FLAM_A SINE Alu 1 132 -1 1965 86 90 21 chr11 2657000 2657279 -146126193 + AluSq SINE Alu 1 298 -15 182 105 26 0 chr11 2657730 2657768 -146125704 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5676 187 70 8 chr11 2658032 2659265 -146124207 + Charlie1a DNA MER1_type 1 1309 -146 1736 149 76 4 chr11 2659322 2659597 -146123875 - AluJo SINE Alu -17 295 1 1724 180 20 10 chr11 2659768 2660063 -146123409 - AluJb SINE Alu -14 298 1 474 263 26 0 chr11 2660164 2660278 -146123194 + L2 LINE L2 3192 3308 -5 216 0 0 0 chr11 2660604 2660628 -146122844 + (TTA)n Simple_repeat Simple_repeat 2 25 0 682 208 21 0 chr11 2661630 2661774 -146121698 - MIR SINE MIR -48 214 68 381 286 43 19 chr11 2661832 2661993 -146121479 - MIR SINE MIR -90 172 8 239 344 43 0 chr11 2662031 2662124 -146121348 + L2 LINE L2 3206 3302 -11 2406 72 3 3 chr11 2662323 2662615 -146120857 - AluSx SINE Alu -19 293 2 245 313 63 46 chr11 2662932 2663083 -146120389 - MIR SINE MIR -78 184 33 234 302 47 35 chr11 2663446 2663532 -146119940 + MIR SINE MIR 37 123 -139 23 0 0 0 chr11 2664446 2664469 -146119003 + AT_rich Low_complexity Low_complexity 1 23 0 3841 143 46 113 chr11 2664470 2664724 -146118748 - L1MB5 LINE L1 -16 6158 5889 2255 101 0 3 chr11 2664724 2665031 -146118441 - AluY SINE Alu -5 306 1 2052 118 40 0 chr11 2665036 2665332 -146118140 - AluSx SINE Alu -4 308 1 3841 143 46 113 chr11 2665332 2665453 -146118019 - L1MB5 LINE L1 -289 5885 5757 2593 65 3 0 chr11 2665453 2665759 -146117713 - AluSp SINE Alu -6 307 1 3841 143 46 113 chr11 2665759 2665898 -146117574 - L1MB5 LINE L1 -417 5757 5610 507 80 13 0 chr11 2665898 2665973 -146117499 + L1PA10 LINE L1 6093 6168 0 3841 143 46 113 chr11 2665973 2666450 -146117022 - L1MB5 LINE L1 -564 5610 5221 503 331 90 53 chr11 2666488 2666704 -146116768 + L2 LINE L2 2899 3135 -137 2348 100 10 0 chr11 2666704 2667013 -146116459 - AluSq SINE Alu -1 312 1 503 331 90 53 chr11 2667013 2667152 -146116320 + L2 LINE L2 3135 3267 -5 499 257 169 8 chr11 2667237 2667474 -146115998 - L2 LINE L2 0 3313 3039 350 289 75 43 chr11 2667501 2667688 -146115784 + MIR SINE MIR 20 212 -50 530 167 0 0 chr11 2668062 2668146 -146115326 + AluSg/x SINE Alu 201 284 -26 2157 151 39 5 chr11 2668146 2668531 -146114941 + L1MB7 LINE L1 5769 6166 -18 1822 149 17 40 chr11 2668544 2668846 -146114626 - AluJb SINE Alu -17 295 1 1617 196 0 11 chr11 2668971 2669298 -146114174 - AluJo SINE Alu 0 324 1 2484 79 0 0 chr11 2669767 2670072 -146113400 + AluY SINE Alu 1 305 -6 2287 91 3 7 chr11 2670082 2670380 -146113092 + AluSc SINE Alu 1 297 -12 2330 93 0 7 chr11 2671047 2671348 -146112124 + AluY SINE Alu 1 299 -12 1925 121 0 54 chr11 2671900 2672213 -146111259 - AluSx SINE Alu -16 296 1 210 59 0 29 chr11 2672460 2672494 -146110978 - MIR SINE MIR -14 248 216 283 238 0 16 chr11 2672664 2672727 -146110745 - MIR SINE MIR -6 256 195 1346 122 0 0 chr11 2672730 2672910 -146110562 - AluSg/x SINE Alu -13 297 118 2292 93 0 3 chr11 2673077 2673368 -146110104 - AluSg SINE Alu -20 290 1 3280 144 69 29 chr11 2673639 2674006 -146109466 - L1PB4 LINE L1 -3 6153 5747 279 0 0 0 chr11 2674006 2674037 -146109435 + (TG)n Simple_repeat Simple_repeat 2 32 0 3280 144 69 29 chr11 2674037 2674322 -146109150 - L1PB4 LINE L1 -409 5747 5475 21 57 0 0 chr11 2674447 2674482 -146108990 + AT_rich Low_complexity Low_complexity 1 35 0 2562 88 3 3 chr11 2674648 2675001 -146108471 - L1PA13 LINE L1 -7 6156 5804 305 179 253 0 chr11 2675003 2675098 -146108374 + Charlie1 DNA MER1_type 2638 2756 -5 263 241 205 9 chr11 2675186 2675298 -146108174 - L2 LINE L2 0 3272 3139 324 333 109 10 chr11 2675562 2675763 -146107709 - MIR SINE MIR -36 226 6 1932 146 7 10 chr11 2676276 2676584 -146106888 - AluJb SINE Alu -5 307 1 1232 204 9 0 chr11 2676648 2676864 -146106608 + MER58A DNA MER1_type 1 218 -6 2190 105 0 3 chr11 2677283 2677604 -146105868 + AluSx SINE Alu 1 320 0 214 290 97 21 chr11 2677734 2677827 -146105645 + MIR SINE MIR 30 129 -79 288 317 120 7 chr11 2678183 2678325 -146105147 - MIR3 SINE MIR -8 200 43 315 327 72 33 chr11 2678689 2678842 -146104630 - L1ME LINE L1 -634 5487 5329 181 274 116 11 chr11 2679596 2679691 -146103781 - L2 LINE L2 -38 3275 3171 416 309 79 26 chr11 2679860 2680125 -146103347 + L3 LINE CR1 894 1172 -405 440 219 57 32 chr11 2680135 2680258 -146103214 - L2 LINE L2 -7 3306 3181 230 196 39 0 chr11 2680258 2680309 -146103163 + L3 LINE CR1 1206 1258 -319 372 262 248 10 chr11 2680376 2680578 -146102894 - MIR SINE MIR -12 250 1 362 281 39 46 chr11 2680591 2680744 -146102728 + L3 LINE CR1 1312 1463 -114 1907 144 11 0 chr11 2680764 2681070 -146102402 + AluJo SINE Alu 3 311 0 667 166 28 108 chr11 2682123 2682406 -146101066 - MER31-int LTR ERV1 -3250 1686 1313 927 126 0 53 chr11 2682653 2682804 -146100668 + FLAM_C SINE Alu 1 143 0 2433 57 0 0 chr11 2682807 2683125 -146100347 + AluY SINE Alu 1 318 0 2135 128 10 0 chr11 2684959 2685256 -146098216 - AluJb SINE Alu -12 300 1 1041 184 0 0 chr11 2685275 2685443 -146098029 - AluJ SINE Alu -14 298 131 21 0 0 0 chr11 2685448 2685469 -146098003 + AT_rich Low_complexity Low_complexity 1 21 0 889 133 0 15 chr11 2685953 2686088 -146097384 + FLAM_C SINE Alu 1 133 0 517 244 16 0 chr11 2686544 2686667 -146096805 - L2 LINE L2 0 3313 3189 202 241 38 25 chr11 2686748 2686827 -146096645 + MIR SINE MIR 113 192 -70 2077 134 3 16 chr11 2686891 2687204 -146096268 + AluSx SINE Alu 1 309 -3 3270 194 37 80 chr11 2687213 2688111 -146095361 + L1ME1 LINE L1 5290 6148 -18 838 148 16 0 chr11 2688225 2688353 -146095119 - AluJ SINE Alu -182 130 1 2117 134 0 0 chr11 2688362 2688654 -146094818 - AluSx SINE Alu -20 292 1 256 333 34 8 chr11 2688684 2688801 -146094671 + L2 LINE L2 3151 3270 -2 722 246 81 21 chr11 2688963 2689199 -146094273 + MIR SINE MIR 3 252 -10 448 309 152 10 chr11 2689216 2689420 -146094052 + MIR SINE MIR 20 252 -10 4703 130 241 44 chr11 2689678 2689694 -146093778 - L1 LINE L1 -761 5385 5373 1702 180 0 44 chr11 2689694 2690011 -146093461 - AluJb SINE Alu -9 303 1 4703 130 241 44 chr11 2690011 2690242 -146093230 - L1 LINE L1 -773 5373 5189 198 0 0 0 chr11 2690242 2690264 -146093208 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4703 130 241 44 chr11 2690264 2690284 -146093188 - L1 LINE L1 -957 5189 5174 1898 124 0 0 chr11 2690284 2690534 -146092938 - AluSx SINE Alu -62 250 1 4703 130 241 44 chr11 2690534 2691158 -146092314 - L1 LINE L1 -972 5174 4674 1934 156 0 13 chr11 2691158 2691472 -146092000 + AluJb SINE Alu 1 310 -2 4703 130 241 44 chr11 2691472 2691766 -146091706 - L1 LINE L1 -1472 4674 3963 1022 261 81 32 chr11 2691774 2692146 -146091326 - MLT1G LTR MaLR -191 399 10 1864 146 14 4 chr11 2692157 2692471 -146091001 + AluSx SINE Alu 1 317 0 220 324 101 14 chr11 2692503 2692651 -146090821 + MIR SINE MIR 84 244 -18 240 300 0 22 chr11 2693359 2693449 -146090023 - L3 LINE CR1 -90 1487 1400 513 335 133 6 chr11 2693576 2693892 -146089580 - L3 LINE CR1 -343 1234 879 432 170 38 28 chr11 2695487 2695593 -146087879 - MIR SINE MIR -10 252 146 1258 296 38 81 chr11 2695596 2696310 -146087162 - MER21B LTR ERV1 -176 687 5 2346 93 0 16 chr11 2696411 2696722 -146086750 - AluSc SINE Alu -1 308 3 652 193 51 57 chr11 2747192 2747234 -146036238 - MER5B DNA MER1_type -2 176 135 1864 152 10 10 chr11 2747234 2747412 -146036060 - AluJb SINE Alu -9 303 123 261 0 0 0 chr11 2747412 2747441 -146036031 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1864 152 10 10 chr11 2747441 2747565 -146035907 - AluJb SINE Alu -188 124 1 652 193 51 57 chr11 2747565 2747698 -146035774 - MER5B DNA MER1_type -43 135 2 2332 98 0 13 chr11 2747907 2748214 -146035258 - AluSx SINE Alu -9 303 1 748 50 0 20 chr11 2748214 2748314 -146035158 - AluY SINE Alu -35 276 179 349 263 46 46 chr11 2748472 2748517 -146034955 + MLT1K LTR MaLR 384 428 -160 1978 155 0 13 chr11 2748517 2748821 -146034651 + AluJb SINE Alu 1 300 -12 349 263 46 46 chr11 2748821 2748950 -146034522 + MLT1K LTR MaLR 427 558 -30 35 0 0 22 chr11 2749095 2749112 -146034360 + AT_rich Low_complexity Low_complexity 1 17 -28 2395 89 0 0 chr11 2749112 2749404 -146034068 + AluSx SINE Alu 1 292 -20 35 0 0 22 chr11 2749404 2749432 -146034040 + AT_rich Low_complexity Low_complexity 17 45 0 23 33 0 0 chr11 2749813 2749843 -146033629 + AT_rich Low_complexity Low_complexity 1 30 0 1221 189 62 72 chr11 2750030 2750142 -146033330 + Tigger3(Golem) DNA MER2_type 2530 2642 -387 2267 102 14 0 chr11 2750142 2750437 -146033035 - AluSq SINE Alu -14 299 1 1221 189 62 72 chr11 2750437 2750546 -146032926 + Tigger3(Golem) DNA MER2_type 2642 2751 -278 2098 135 0 25 chr11 2750546 2750864 -146032608 - AluSx SINE Alu -2 310 1 1221 189 62 72 chr11 2750864 2751042 -146032430 + Tigger3(Golem) DNA MER2_type 2751 2926 -103 1865 99 56 49 chr11 2751800 2752104 -146031368 + AluSx SINE Alu 1 306 -6 667 280 59 57 chr11 2752224 2752596 -146030876 + L2 LINE L2 2941 3313 0 186 364 34 23 chr11 2752667 2752755 -146030717 + L2 LINE L2 3136 3224 -48 207 146 0 0 chr11 2752802 2752843 -146030629 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2123 110 0 0 chr11 2752990 2753263 -146030209 + AluSx SINE Alu 24 296 -16 282 246 0 0 chr11 2753442 2753499 -146029973 - MER8 DNA MER2_type -2 237 181 2859 117 27 27 chr11 2753514 2753960 -146029512 + Tigger2 DNA MER2_type 2273 2718 0 727 359 23 11 chr11 2754250 2754512 -146028960 + MLT1K LTR MaLR 17 281 -307 180 152 0 0 chr11 2754563 2754596 -146028876 + (TAA)n Simple_repeat Simple_repeat 3 35 0 872 253 21 17 chr11 2754598 2754839 -146028633 - MIR SINE MIR 0 262 21 441 0 0 0 chr11 2754844 2754893 -146028579 + (TG)n Simple_repeat Simple_repeat 2 50 0 8558 47 9 0 chr11 2755109 2756937 -146026535 + L1PA5 LINE L1 4300 6154 0 814 171 8 0 chr11 2756978 2757101 -146026371 - FLAM_C SINE Alu -19 124 1 1186 118 49 25 chr11 2757120 2757324 -146026148 + MER3 DNA MER1_type 1 209 0 1521 150 0 0 chr11 2757585 2757798 -146025674 + MER1B DNA MER1_type 1 213 -84 315 209 60 0 chr11 2757902 2757969 -146025503 + MER5B DNA MER1_type 108 178 0 1621 172 0 40 chr11 2758003 2758300 -146025172 - MLT1D LTR MaLR 0 505 221 274 167 91 91 chr11 2758297 2758363 -146025109 - MLT1D LTR MaLR -439 66 1 * 563 287 35 0 chr11 2758783 2758985 -146024487 - LTR33 LTR ERVL -7 514 306 458 281 97 42 chr11 2759033 2759250 -146024222 - LTR33 LTR ERVL -292 229 1 1166 162 15 0 chr11 2759279 2759477 -146023995 + L1MB1 LINE L1 5596 5796 -372 3570 111 4 132 chr11 2759477 2760018 -146023454 + MER4D LTR ERV1 1 427 -445 7775 28 17 0 chr11 2760018 2761010 -146022462 - L1PA3 LINE L1 0 6155 5160 3570 111 4 132 chr11 2761010 2761198 -146022274 + MER4D LTR ERV1 427 637 -235 658 175 0 0 chr11 2761349 2761463 -146022009 + AluSg/x SINE Alu 197 310 0 2013 131 37 6 chr11 2761463 2761791 -146021681 + L1MB1 LINE L1 5803 6140 -28 2261 85 0 7 chr11 2761791 2762074 -146021398 - AluSc SINE Alu -15 294 14 348 176 0 44 chr11 2763263 2763331 -146020141 - MER4D LTR ERV1 -455 417 353 4408 156 47 56 chr11 2763387 2764729 -146018743 + L1MB7 LINE L1 4860 6184 0 294 295 67 40 chr11 2764783 2765007 -146018465 - L2 LINE L2 -945 2369 2140 1236 208 0 21 chr11 2766008 2766248 -146017224 - AluJo SINE Alu -77 235 1 247 309 15 0 chr11 2766871 2766939 -146016533 + L2 LINE L2 3231 3299 -14 619 239 46 10 chr11 2767008 2767205 -146016267 + L1MEc LINE L1 1972 2175 -4221 195 42 0 0 chr11 2767385 2767409 -146016063 + (CA)n Simple_repeat Simple_repeat 1 24 0 2436 89 0 19 chr11 2767731 2768044 -146015428 + AluSx SINE Alu 1 307 -5 252 267 9 57 chr11 2768443 2768548 -146014924 + MIR SINE MIR 58 157 -105 876 206 85 45 chr11 2768557 2768685 -146014787 - MER2 DNA MER2_type -4 341 220 2532 57 0 0 chr11 2768685 2768982 -146014490 + AluY SINE Alu 1 297 -14 876 206 85 45 chr11 2768982 2769100 -146014372 - MER2 DNA MER2_type -125 220 85 4282 124 53 49 chr11 2769105 2769765 -146013707 - L1MA5A LINE L1 -4 6293 5628 1963 156 0 16 chr11 2769765 2770079 -146013393 - AluJo SINE Alu -3 309 1 4282 124 53 49 chr11 2770079 2770211 -146013261 - L1MA5A LINE L1 -669 5628 5498 1125 278 87 4 chr11 2770311 2770872 -146012600 - L1MEc LINE L1 -2597 3618 3011 1056 226 62 21 chr11 2771112 2771448 -146012024 - L1MEc LINE L1 -3183 3032 2683 6380 93 5 0 chr11 2771451 2772398 -146011074 - L1PA11 LINE L1 0 6174 5208 937 155 31 0 chr11 2772398 2772559 -146010913 + L1PA11 LINE L1 5060 5225 -921 1500 205 79 79 chr11 2772623 2772641 -146010831 - L1MEc LINE L1 -3539 2676 2659 2205 128 16 0 chr11 2772641 2772947 -146010525 - AluSx SINE Alu -1 311 1 1500 205 79 79 chr11 2772947 2773635 -146009837 - L1MEc LINE L1 -3556 2659 1972 2102 145 0 0 chr11 2773635 2773931 -146009541 - AluSx SINE Alu -16 296 1 1500 205 79 79 chr11 2773931 2773950 -146009522 - L1MEc LINE L1 -4243 1972 1983 356 104 117 13 chr11 2773950 2774027 -146009445 + L1PA4 LINE L1 6071 6155 0 1500 205 79 79 chr11 2774027 2774070 -146009402 - L1MEc LINE L1 -4231 1984 1942 884 227 38 55 chr11 2774066 2774304 -146009168 - L1MEc LINE L1 -6126 270 37 * 738 226 77 18 chr11 2774735 2774903 -146008569 + AluJo SINE Alu 120 297 -15 2275 103 3 0 chr11 2774903 2775194 -146008278 + AluSg SINE Alu 1 292 -18 2285 106 6 6 chr11 2776871 2777183 -146006289 + AluSx SINE Alu 1 312 0 16668 177 66 37 chr11 2777235 2779398 -146004074 - ERVL LTR ERVL -1994 3770 1472 2311 115 0 0 chr11 2779398 2779694 -146003778 - AluSx SINE Alu -16 296 1 16668 177 66 37 chr11 2779694 2780896 -146002576 - ERVL LTR ERVL -4292 1472 307 282 270 56 0 chr11 2780925 2781014 -146002458 + L1M4 LINE L1 842 935 -5607 1756 191 3 3 chr11 2781016 2781325 -146002147 + AluSx SINE Alu 1 309 -3 1735 199 57 14 chr11 2781326 2781814 -146001658 + L1M4 LINE L1 1094 1602 -4940 2091 109 0 4 chr11 2781916 2782191 -146001281 - AluSx SINE Alu -38 274 1 253 217 0 0 chr11 2782327 2782373 -146001099 - L2 LINE L2 -15 3257 3212 208 274 158 18 chr11 2783344 2783508 -145999964 + L2 LINE L2 3127 3313 0 526 267 11 59 chr11 2783571 2783727 -145999745 - MIR SINE MIR -80 182 35 1574 170 60 3 chr11 2783727 2784010 -145999462 - AluJo SINE Alu -13 299 1 526 267 11 59 chr11 2784010 2784040 -145999432 - MIR SINE MIR -227 35 5 1059 235 71 18 chr11 2784340 2784680 -145998792 + L2 LINE L2 2944 3301 -12 199 318 63 0 chr11 2784981 2785044 -145998428 - MIR SINE MIR -46 216 150 * 297 232 134 36 chr11 2785041 2785153 -145998319 + L2 LINE L2 3191 3313 0 295 266 128 9 chr11 2785153 2785262 -145998210 - MIR SINE MIR -66 142 21 340 222 136 25 chr11 2785694 2785856 -145997616 + Charlie7 DNA MER1_type 2427 2606 -6 2441 84 3 0 chr11 2785857 2786153 -145997319 + AluSc SINE Alu 1 297 -12 872 203 122 10 chr11 2786952 2787149 -145996323 + MER20 DNA MER1_type 1 219 0 1667 187 3 10 chr11 2787576 2787870 -145995602 - AluJb SINE Alu -16 296 5 2314 87 0 13 chr11 2787882 2788182 -145995290 - AluSx SINE Alu -6 306 11 1209 94 12 0 chr11 2788182 2788342 -145995130 - AluSg/x SINE Alu -5 305 144 1914 163 3 13 chr11 2788762 2789075 -145994397 - AluJo SINE Alu -2 310 1 593 194 0 0 chr11 2789322 2789430 -145994042 + FLAM_C SINE Alu 3 110 -33 2680 126 12 7 chr11 2789530 2789936 -145993536 - L1PA15 LINE L1 -267 5898 5488 1669 144 88 11 chr11 2789936 2790221 -145993251 - AluJo SINE Alu -5 307 1 331 335 33 42 chr11 2790336 2790551 -145992921 - L1M4 LINE L1 -2574 3572 3360 345 340 205 0 chr11 2791550 2791765 -145991707 - L2 LINE L2 0 3272 3014 331 257 108 12 chr11 2792813 2792962 -145990510 - MIR3 SINE MIR -63 145 3 796 231 74 10 chr11 2793705 2793908 -145989564 - MLT1C LTR MaLR 0 467 252 611 263 58 26 chr11 2793936 2794126 -145989346 - MLT1C LTR MaLR -309 196 1 183 287 69 30 chr11 2795170 2795271 -145988201 + L2 LINE L2 2949 3053 -219 28 0 0 0 chr11 2795753 2795781 -145987691 + AT_rich Low_complexity Low_complexity 1 28 0 2120 132 0 0 chr11 2795784 2796072 -145987400 + AluSx SINE Alu 1 288 -24 1289 131 62 4 chr11 2796075 2796319 -145987153 - L1MA4A LINE L1 -3 6300 6043 189 254 79 0 chr11 2797617 2797680 -145985792 - MIR3 SINE MIR -31 177 110 533 224 209 25 chr11 2797834 2798030 -145985442 + MIR SINE MIR 27 258 -4 402 257 58 134 chr11 2798049 2798310 -145985162 - L2 LINE L2 -2 3270 3030 358 322 115 0 chr11 2798331 2798514 -145984958 - MIR SINE MIR -39 223 20 554 215 76 0 chr11 2798662 2798806 -145984666 + MIR SINE MIR 2 156 -106 479 184 78 0 chr11 2798907 2799010 -145984462 + MIR SINE MIR 152 262 0 414 206 97 45 chr11 2799262 2799417 -145984055 + MER103 DNA DNA 2 164 -2 849 143 8 0 chr11 2799473 2799599 -145983873 + FLAM_C SINE Alu 1 127 -16 394 247 95 47 chr11 2799634 2799824 -145983648 + MIR SINE MIR 63 261 -1 189 74 0 0 chr11 2800293 2800320 -145983152 + (CGG)n Simple_repeat Simple_repeat 3 29 0 885 119 24 54 chr11 2801366 2801534 -145981938 - MLT1A2 LTR MaLR -208 166 4 252 301 75 11 chr11 2802567 2802660 -145980812 + MIR3 SINE MIR 12 110 -98 1114 222 15 11 chr11 2805132 2805402 -145978070 - L1ME1 LINE L1 -5 6161 5891 726 230 125 30 chr11 2805869 2806097 -145977375 - MIR SINE MIR -2 260 16 539 231 66 16 chr11 2806404 2806525 -145976947 - L2 LINE L2 0 3272 3146 513 264 129 11 chr11 2806778 2806956 -145976516 - MIR SINE MIR -51 211 13 289 347 50 8 chr11 2807015 2807136 -145976336 - L2 LINE L2 -5 3267 3142 752 247 36 46 chr11 2807494 2807596 -145975876 + MIR SINE MIR 40 141 -121 2508 56 0 0 chr11 2807596 2807898 -145975574 + AluY SINE Alu 1 302 -9 752 247 36 46 chr11 2807898 2808014 -145975458 + MIR SINE MIR 141 256 -6 322 294 52 59 chr11 2808174 2808310 -145975162 - MIR3 SINE MIR -40 168 34 268 413 0 14 chr11 2809736 2809874 -145973598 - L2 LINE L2 -218 3054 2919 205 182 23 0 chr11 2810670 2810714 -145972758 - L2 LINE L2 -1 3271 3227 235 303 61 0 chr11 2810876 2810942 -145972530 - L2 LINE L2 -215 3057 2988 3626 173 25 23 chr11 2811451 2812178 -145971294 + L1MB5 LINE L1 5447 6174 0 2292 158 88 40 chr11 2812178 2812348 -145971124 + L1MB7 LINE L1 5110 5270 -914 1987 137 0 7 chr11 2812348 2812654 -145970818 + AluSx SINE Alu 2 305 -7 2292 158 88 40 chr11 2812654 2813303 -145970169 + L1MB7 LINE L1 5270 6167 -17 907 139 7 13 chr11 2813313 2813464 -145970008 + Tigger1 DNA MER2_type 1 150 -2268 1340 124 14 5 chr11 2813467 2813676 -145969796 + Tigger1 DNA MER2_type 2208 2418 0 351 234 175 0 chr11 2813750 2813887 -145969585 + MIR3 SINE MIR 41 201 -7 207 285 118 4 chr11 2813981 2814095 -145969377 + MIR SINE MIR 65 192 -16 327 243 0 0 chr11 2814992 2815062 -145968410 + MIR SINE MIR 61 130 -132 320 303 34 25 chr11 2816442 2816561 -145966911 - L2 LINE L2 -20 3252 3133 825 145 23 8 chr11 2816575 2816706 -145966766 + FLAM_C SINE Alu 1 133 0 181 384 36 27 chr11 2817001 2817113 -145966359 + L2 LINE L2 2224 2336 -978 328 270 120 0 chr11 2817185 2817285 -145966187 - MIR SINE MIR -65 143 32 355 271 47 0 chr11 2817639 2817746 -145965726 + MIR SINE MIR 95 206 -56 484 316 199 3 chr11 2817941 2818223 -145965249 + L3 LINE CR1 342 678 -899 391 275 14 84 chr11 2820650 2820792 -145962680 + MIR3 SINE MIR 72 203 -5 187 303 0 30 chr11 2821272 2821338 -145962134 - L2 LINE L2 -665 2649 2586 180 0 0 0 chr11 2821357 2821377 -145962095 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1528 147 45 4 chr11 2821385 2821650 -145961822 - AluJo SINE Alu -36 276 1 307 270 141 38 chr11 2821705 2821890 -145961582 - MIR SINE MIR -25 237 34 198 0 0 0 chr11 2823059 2823081 -145960391 + (T)n Simple_repeat Simple_repeat 1 22 0 411 244 122 28 chr11 2823442 2823622 -145959850 + L2 LINE L2 3117 3313 0 2248 108 0 9 chr11 2824867 2825183 -145958289 + AluSq SINE Alu 1 313 0 2877 216 105 29 chr11 2825257 2826215 -145957257 - L1ME3 LINE L1 -2 6955 5894 1881 157 0 3 chr11 2826215 2826528 -145956944 + AluSx SINE Alu 1 312 0 2877 216 105 29 chr11 2826528 2826679 -145956793 - L1ME3 LINE L1 -1063 5894 5756 632 270 19 5 chr11 2826740 2826951 -145956521 - L1ME3 LINE L1 -3195 3746 3533 621 248 63 46 chr11 2826962 2827602 -145955870 + L1MEc LINE L1 2160 2694 -3452 * 821 260 99 40 chr11 2827596 2828129 -145955343 - L1ME3 LINE L1 -4887 1536 1279 1867 151 3 0 chr11 2828686 2828984 -145954488 - AluJo SINE Alu -13 299 1 417 310 89 47 chr11 2829707 2829920 -145953552 - L3 LINE CR1 0 1577 1356 332 263 58 12 chr11 2829908 2830023 -145953449 - MIR3 SINE MIR -111 97 1 * 226 296 102 0 chr11 2830186 2830284 -145953188 + MIR SINE MIR 57 164 -98 202 291 0 35 chr11 2830579 2830665 -145952807 + CT-rich Low_complexity Low_complexity 1 83 0 252 278 10 41 chr11 2830888 2830985 -145952487 + CT-rich Low_complexity Low_complexity 5 98 0 200 284 0 40 chr11 2833317 2833391 -145950081 + CT-rich Low_complexity Low_complexity 2 72 0 258 304 189 20 chr11 2833876 2834077 -145949395 - MIR SINE MIR -23 239 5 304 318 93 9 chr11 2834242 2834349 -145949123 - L1ME LINE L1 -370 5751 5636 333 100 0 0 chr11 2834907 2834957 -145948515 + (CCA)n Simple_repeat Simple_repeat 2 51 0 503 308 175 45 chr11 2835379 2835966 -145947506 - L2 LINE L2 -1 3271 2585 210 267 17 0 chr11 2836005 2836065 -145947407 - L2 LINE L2 -829 2485 2425 321 321 46 0 chr11 2836143 2836274 -145947198 - MIR SINE MIR -65 143 30 1695 134 52 14 chr11 2837167 2837458 -145946014 + AluJb SINE Alu 1 302 -10 303 296 91 61 chr11 2838406 2838538 -145944934 - MIR SINE MIR -46 216 81 244 313 6 47 chr11 2839112 2839446 -145944026 + CT-rich Low_complexity Low_complexity 1 320 0 483 173 67 0 chr11 2841546 2841650 -145941822 - MER53 DNA DNA 0 189 79 2052 116 0 0 chr11 2841740 2842042 -145941430 - AluSg SINE Alu -2 308 7 698 155 9 0 chr11 2842046 2842162 -145941310 - AluJo SINE Alu -175 137 21 214 205 179 0 chr11 2843529 2843607 -145939865 - MIR SINE MIR -51 211 120 189 262 143 12 chr11 2843934 2844018 -145939454 - L2 LINE L2 -9 3263 3169 1467 181 0 11 chr11 2844228 2844499 -145938973 - AluJo SINE Alu -24 288 21 22 56 0 0 chr11 2844827 2844863 -145938609 + AT_rich Low_complexity Low_complexity 1 36 0 822 106 8 15 chr11 2844863 2844995 -145938477 - FLAM_C SINE Alu -12 131 1 2040 117 23 3 chr11 2845192 2845491 -145937981 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr11 2845648 2845697 -145937775 + AT_rich Low_complexity Low_complexity 1 49 0 1104 157 0 5 chr11 2845780 2845965 -145937507 - AluSg/x SINE Alu -12 300 117 840 181 0 0 chr11 2846458 2846629 -145936843 + CT-rich Low_complexity Low_complexity 4 174 0 277 345 48 21 chr11 2846661 2846806 -145936666 - L2 LINE L2 -34 3279 3131 824 277 59 57 chr11 2846831 2847203 -145936269 - L2 LINE L2 0 3313 2941 1843 104 49 46 chr11 2847323 2847630 -145935842 - AluSx SINE Alu -4 308 1 202 280 133 0 chr11 2848400 2848475 -145934997 - L2 LINE L2 0 3272 3188 1553 140 0 4 chr11 2848523 2848759 -145934713 - MER46A DNA MER2_type 0 236 2 216 250 0 0 chr11 2848815 2848855 -145934617 - MIR SINE MIR -7 255 216 361 257 12 70 chr11 2849223 2849394 -145934078 - L2 LINE L2 -151 3162 3002 380 299 39 74 chr11 2849396 2849503 -145933969 - L2 LINE L2 -415 2899 2790 2016 110 0 42 chr11 2849503 2849813 -145933659 - AluSq SINE Alu -16 297 1 380 299 39 74 chr11 2849813 2849936 -145933536 - L2 LINE L2 -524 2790 2677 2340 55 20 0 chr11 2850564 2850856 -145932616 + AluSx SINE Alu 1 298 -14 387 276 178 18 chr11 2851517 2851680 -145931792 - MIR3 SINE MIR -6 202 14 645 135 31 0 chr11 2851757 2851853 -145931619 + AluJb SINE Alu 10 108 -204 1387 160 30 38 chr11 2851854 2852117 -145931355 - AluSx SINE Alu -51 261 1 1006 178 35 41 chr11 2852119 2852316 -145931156 + AluJb SINE Alu 106 301 -11 333 214 101 11 chr11 2852786 2852875 -145930597 + MIR SINE MIR 84 180 -82 1584 191 0 20 chr11 2853422 2853720 -145929752 - AluJo SINE Alu -20 292 1 1521 142 108 54 chr11 2853758 2854054 -145929418 - AluJo SINE Alu 0 312 1 410 265 12 0 chr11 2854069 2854152 -145929320 - FLAM_A SINE Alu -58 84 1 704 185 0 0 chr11 2854506 2854625 -145928847 + AluJb SINE Alu 1 119 -193 813 114 44 38 chr11 2854765 2854923 -145928549 - AluY SINE Alu -152 159 1 195 160 40 80 chr11 2855001 2855051 -145928421 - L2 LINE L2 -4 3309 3262 437 310 90 29 chr11 2855540 2855850 -145927622 - L1MC4a LINE L1 -1923 5885 5557 2480 72 0 0 chr11 2856048 2856353 -145927119 + AluY SINE Alu 1 305 -6 28 29 0 0 chr11 2856936 2856971 -145926501 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 2857323 2857352 -145926120 + AT_rich Low_complexity Low_complexity 1 29 0 420 269 169 8 chr11 2857728 2857858 -145925614 + MIR SINE MIR 1 151 -111 508 157 0 0 chr11 2857892 2857981 -145925491 - AluSg/x SINE Alu -20 290 202 414 56 0 0 chr11 2858035 2858089 -145925383 + Alu SINE Alu 248 301 -10 227 229 84 36 chr11 2858103 2858186 -145925286 - MIR SINE MIR -36 226 140 213 308 0 39 chr11 2858180 2858284 -145925188 + MIR SINE MIR 162 261 -1 * 495 157 0 12 chr11 2858389 2858472 -145925000 + FLAM SINE Alu 42 123 -20 1670 79 0 19 chr11 2858511 2858727 -145924745 + AluY SINE Alu 85 296 -15 528 116 21 73 chr11 2859549 2859665 -145923807 + L1MB8 LINE L1 6049 6150 -34 2003 128 7 10 chr11 2859665 2859961 -145923511 - AluSx SINE Alu -15 297 3 528 116 21 73 chr11 2859961 2859995 -145923477 + L1MB8 LINE L1 6150 6184 0 240 413 9 0 chr11 2859996 2860105 -145923367 - L2 LINE L2 -661 2653 2544 730 238 0 7 chr11 2860120 2860263 -145923209 + FRAM SINE Alu 1 142 -34 234 271 28 28 chr11 2860408 2860515 -145922957 + L1ME LINE L1 3765 3871 -2275 447 298 88 0 chr11 2860631 2860846 -145922626 + L1ME LINE L1 4111 4344 -1802 2057 148 29 18 chr11 2860871 2861145 -145922327 - Tigger3(Golem) DNA MER2_type 0 3028 2747 2187 116 0 25 chr11 2861145 2861463 -145922009 + AluSx SINE Alu 1 310 -2 2057 148 29 18 chr11 2861463 2861572 -145921900 - Tigger3(Golem) DNA MER2_type -281 2747 2641 599 231 15 0 chr11 2861573 2861703 -145921769 + FLAM_A SINE Alu 1 132 -1 369 105 35 0 chr11 2861703 2861760 -145921712 + AluSq SINE Alu 134 192 -111 1885 153 0 7 chr11 2862116 2862403 -145921069 - AluSx SINE Alu -25 287 3 237 289 0 0 chr11 2862471 2862547 -145920925 + L1ME LINE L1 4534 4609 -1537 805 227 135 40 chr11 2862567 2862897 -145920575 + MLT1D LTR MaLR 1 363 -142 2282 92 0 0 chr11 2862957 2863249 -145920223 - AluSq SINE Alu -21 292 1 1892 129 4 11 chr11 2863736 2864015 -145919457 + AluSx SINE Alu 35 311 -1 928 275 75 8 chr11 2864067 2864080 -145919392 + L1ME LINE L1 5291 5302 -864 1839 175 13 0 chr11 2864080 2864388 -145919084 + AluJo SINE Alu 1 312 0 928 275 75 8 chr11 2864388 2864859 -145918613 + L1ME LINE L1 5302 5822 -344 199 311 39 19 chr11 2865154 2865257 -145918215 - L2 LINE L2 -1680 1634 1530 429 312 81 29 chr11 2865917 2866090 -145917382 + MIR3 SINE MIR 20 201 -7 398 230 50 0 chr11 2866121 2866221 -145917251 - MIR SINE MIR -12 250 146 437 273 62 8 chr11 2866238 2866366 -145917106 - MIR SINE MIR -74 188 54 326 296 35 52 chr11 2866425 2866540 -145916932 + MIR SINE MIR 34 146 -62 682 150 8 132 chr11 2867446 2867671 -145915801 - L1ME2 LINE L1 -12 6152 5955 1659 177 27 10 chr11 2867759 2868058 -145915414 - AluJo SINE Alu -8 304 1 1585 186 0 43 chr11 2868116 2868439 -145915033 + AluJb SINE Alu 1 309 -3 2322 125 0 0 chr11 2869983 2870287 -145913185 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr11 2870540 2870562 -145912910 + AT_rich Low_complexity Low_complexity 1 22 0 653 164 0 0 chr11 2871116 2871226 -145912246 + AluJb SINE Alu 199 308 -4 189 330 152 36 chr11 2871844 2871956 -145911516 - L2 LINE L2 -14 3258 3134 349 304 0 0 chr11 2871992 2872084 -145911388 + L2 LINE L2 2679 2770 -544 1394 113 34 119 chr11 2872187 2872299 -145911173 - L1MB7 LINE L1 -45 6139 6019 2505 76 0 0 chr11 2872299 2872602 -145910870 - AluSc SINE Alu -4 305 3 1394 113 34 119 chr11 2872602 2872843 -145910629 - L1MB7 LINE L1 -165 6019 5816 789 270 54 32 chr11 2872847 2873209 -145910263 + L2 LINE L2 2776 3138 -175 229 328 121 17 chr11 2873380 2873496 -145909976 - L2 LINE L2 -4 3268 3141 493 126 223 0 chr11 2873634 2873737 -145909735 + MER3 DNA MER1_type 83 208 -1 25 0 0 0 chr11 2873960 2873985 -145909487 + AT_rich Low_complexity Low_complexity 1 25 0 1020 243 100 43 chr11 2874692 2875133 -145908339 + MLT1C LTR MaLR 1 466 -1 703 216 115 16 chr11 2875235 2875538 -145907934 - MLT1E1 LTR MaLR -44 610 210 766 156 8 8 chr11 2875558 2875686 -145907786 - AluSx SINE Alu -12 298 171 923 124 0 0 chr11 2875686 2875807 -145907665 - AluSx SINE Alu -191 122 2 884 190 82 0 chr11 2875808 2876003 -145907469 - MLT1E1 LTR MaLR -437 217 7 196 271 50 86 chr11 2876643 2876783 -145906689 + MIR SINE MIR 128 262 0 250 256 96 45 chr11 2877268 2877424 -145906048 - L1ME4a LINE L1 -18 6103 5940 192 40 0 0 chr11 2877458 2877483 -145905989 + (TA)n Simple_repeat Simple_repeat 1 25 0 2040 143 14 0 chr11 2877810 2878096 -145905376 + AluSx SINE Alu 1 290 -22 208 338 62 12 chr11 2878270 2878350 -145905122 - MIR SINE MIR -119 143 60 22 35 0 0 chr11 2878366 2878395 -145905077 + AT_rich Low_complexity Low_complexity 1 29 0 2217 129 30 3 chr11 2878416 2878780 -145904692 - THE1C LTR MaLR 0 375 2 188 195 0 24 chr11 2879475 2879516 -145903956 + L2 LINE L2 3274 3313 0 312 230 0 48 chr11 2879659 2879773 -145903699 + MER5B DNA MER1_type 1 174 -4 462 178 9 19 chr11 2879945 2880052 -145903420 - L1MA9 LINE L1 0 6312 6207 1114 113 0 19 chr11 2880078 2880237 -145903235 - AluSg/x SINE Alu -25 285 130 577 253 29 58 chr11 2880756 2880869 -145902603 + MER5B DNA MER1_type 2 110 -68 2166 89 52 0 chr11 2880869 2881160 -145902312 - AluSx SINE Alu -6 306 1 577 253 29 58 chr11 2881160 2881220 -145902252 + MER5B DNA MER1_type 110 170 -8 248 283 181 65 chr11 2882749 2882887 -145900585 - L2 LINE L2 -16 3256 3103 1961 151 7 0 chr11 2883123 2883407 -145900065 - AluSx SINE Alu -26 286 1 951 59 7 13 chr11 2883516 2883668 -145899804 - SVA Other Other -520 866 716 2992 154 75 6 chr11 2884547 2884892 -145898580 - L1MB4 LINE L1 -8 6172 5852 1723 151 37 40 chr11 2884892 2885191 -145898281 - AluSx SINE Alu -12 300 3 2992 154 75 6 chr11 2885191 2885488 -145897984 - L1MB4 LINE L1 -328 5852 5486 735 166 36 67 chr11 2885493 2885686 -145897786 - AluJo SINE Alu -9 303 117 2398 190 54 41 chr11 2885705 2886476 -145896996 - L1M4c LINE L1 -4839 1703 930 1726 186 3 3 chr11 2886476 2886771 -145896701 - AluSx SINE Alu -17 295 1 2398 190 54 41 chr11 2886771 2886862 -145896610 - L1M4c LINE L1 -5612 930 842 358 218 0 0 chr11 2886891 2886969 -145896503 + ERVL LTR ERVL 307 384 -5380 250 256 96 45 chr11 2887477 2887633 -145895839 - L1ME4a LINE L1 -18 6103 5940 192 40 0 0 chr11 2887668 2887693 -145895779 + (TA)n Simple_repeat Simple_repeat 1 25 0 2040 143 14 0 chr11 2888019 2888305 -145895167 + AluSx SINE Alu 1 290 -22 208 319 57 22 chr11 2888479 2888569 -145894903 - MIR SINE MIR -66 142 52 22 35 0 0 chr11 2888576 2888605 -145894867 + AT_rich Low_complexity Low_complexity 1 29 0 2379 113 30 0 chr11 2888626 2888989 -145894483 - THE1C LTR MaLR 0 375 2 580 230 46 75 chr11 2890422 2890535 -145892937 + MER5B DNA MER1_type 2 110 -68 2166 89 52 0 chr11 2890535 2890826 -145892646 - AluSx SINE Alu -6 306 1 580 230 46 75 chr11 2890826 2890886 -145892586 + MER5B DNA MER1_type 110 170 -8 248 283 181 65 chr11 2892416 2892554 -145890918 - L2 LINE L2 -16 3256 3103 1961 151 7 0 chr11 2892790 2893074 -145890398 - AluSx SINE Alu -26 286 1 220 48 48 24 chr11 2893081 2893123 -145890349 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 618 167 87 80 chr11 2893125 2893275 -145890197 - AluSg/x SINE Alu -25 285 135 210 37 0 0 chr11 2893285 2893312 -145890160 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6370 73 37 43 chr11 2893326 2894500 -145888972 - SVA Other Other -518 1383 432 951 59 7 13 chr11 2894517 2894669 -145888803 - SVA Other Other -520 866 716 3160 149 21 21 chr11 2895591 2896242 -145887230 - L1MA4A LINE L1 -348 7017 6367 * 40091 32 24 2 chr11 2896236 2902260 -145881212 - L1PA3 LINE L1 -10 6145 2 4237 196 16 22 chr11 2902261 2903042 -145880430 - L1MA4A LINE L1 -815 6393 5618 2261 104 13 13 chr11 2903042 2903351 -145880121 - AluSx SINE Alu -3 309 1 4237 196 16 22 chr11 2903351 2903512 -145879960 - L1MA4A LINE L1 -1590 5618 5457 387 173 0 0 chr11 2903521 2903596 -145879876 - L1MA5A LINE L1 0 6297 6223 4603 196 24 8 chr11 2903601 2904142 -145879330 - L1MA4A LINE L1 -3024 4184 3618 1463 118 50 5 chr11 2904142 2904362 -145879110 + MER30 DNA MER1_type 1 230 0 4603 196 24 8 chr11 2904362 2904837 -145878635 - L1MA4A LINE L1 -3590 3618 3152 1989 210 95 24 chr11 2904834 2905530 -145877942 - L1MA4A LINE L1 -5737 1472 741 * 227 275 11 44 chr11 2905505 2905596 -145877876 - L1M2b LINE L1 -6064 1145 1058 * 274 269 190 5 chr11 2905970 2906128 -145877344 - MIR SINE MIR -50 212 34 1904 156 73 43 chr11 2906389 2906760 -145876712 + MSTD LTR MaLR 6 387 -9 458 275 53 5 chr11 2907273 2907462 -145876010 - MIR SINE MIR -12 250 53 291 246 133 0 chr11 2908451 2908566 -145874906 + MIR SINE MIR 37 165 -63 202 184 0 0 chr11 2908577 2908615 -145874857 - L2 LINE L2 0 3313 3276 214 326 0 20 chr11 2908651 2908749 -145874723 + MIR SINE MIR 162 257 -5 * 468 241 150 9 chr11 2908681 2908901 -145874571 - MIR SINE MIR 0 262 16 405 165 156 55 chr11 2911381 2911490 -145871982 - FRAM SINE Alu -11 165 46 6203 205 55 59 chr11 2912151 2913076 -145870396 - L1MC4 LINE L1 -1 8041 7114 543 101 0 0 chr11 2913076 2913155 -145870317 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 6203 205 55 59 chr11 2913155 2913584 -145869888 - L1MC4 LINE L1 -928 7114 6685 207 100 0 0 chr11 2913584 2913614 -145869858 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 6203 205 55 59 chr11 2913614 2914170 -145869302 - L1MC4 LINE L1 -1357 6685 6041 3106 231 32 14 chr11 2914714 2915495 -145867977 - L1MC4a LINE L1 -1759 6049 5255 2283 107 0 0 chr11 2915555 2915854 -145867618 - AluSx SINE Alu -13 299 1 68 42 0 0 chr11 2915871 2915967 -145867505 + AT_rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr11 2916683 2916707 -145866765 + AT_rich Low_complexity Low_complexity 1 24 0 2296 119 28 0 chr11 2916717 2917070 -145866402 - L1PB1 LINE L1 -7 6144 5782 186 125 0 54 chr11 2917070 2917126 -145866346 + (TA)n Simple_repeat Simple_repeat 2 54 0 4293 155 33 1 chr11 2917126 2918471 -145865001 - L1PB1 LINE L1 -359 5792 4400 323 315 15 39 chr11 2918672 2918802 -145864670 + MER89-int LTR ERV1 3794 3920 -2881 2295 128 6 0 chr11 2918897 2919242 -145864230 - L1PA13 LINE L1 -5 6158 5812 1998 304 88 28 chr11 2919261 2920200 -145863272 + MER89-int LTR ERV1 1969 2964 -1683 271 357 27 37 chr11 2920854 2921338 -145862134 - L1MC4 LINE L1 -265 5856 5378 2163 88 35 7 chr11 2922715 2922998 -145860474 + AluY SINE Alu 1 291 -20 1796 75 13 0 chr11 2923231 2923458 -145860014 + AluSq SINE Alu 74 303 -10 248 284 131 34 chr11 2923821 2923997 -145859475 + MIR SINE MIR 19 211 -51 2313 81 0 60 chr11 2924736 2925068 -145858404 + AluSx SINE Alu 1 312 0 195 42 0 0 chr11 2925561 2925585 -145857887 + (T)n Simple_repeat Simple_repeat 1 24 0 327 25 0 0 chr11 2926700 2926740 -145856732 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 180 16 33 chr11 2928714 2928775 -145854697 + T-rich Low_complexity Low_complexity 5 64 0 662 159 38 30 chr11 2930375 2930507 -145852965 - AluJb SINE Alu -178 134 2 22 70 0 0 chr11 2930832 2930875 -145852597 + AT_rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr11 2932433 2932478 -145850994 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 358 142 11 chr11 2933007 2933281 -145850191 + L2 LINE L2 2553 2862 -452 251 255 60 81 chr11 2933320 2933469 -145850003 + L2 LINE L2 2916 3061 -211 2369 83 0 0 chr11 2934027 2934316 -145849156 - AluSx SINE Alu -23 289 1 2040 82 7 0 chr11 2935886 2936156 -145847316 + L1PA6 LINE L1 5879 6150 -4 2940 92 29 22 chr11 2936946 2937391 -145846081 - LTR7 LTR ERV1 -2 448 1 2332 95 68 14 chr11 2937391 2937761 -145845711 - HERVH LTR ERV1 0 7713 7324 1416 99 20 0 chr11 2937761 2937962 -145845510 - HERVH LTR ERV1 -1894 5819 5615 3133 124 0 2 chr11 2937997 2938611 -145844861 - HERVH LTR ERV1 -2564 5149 4489 9326 180 66 54 chr11 2938614 2942518 -145840954 - HERVH LTR ERV1 -3720 3993 1 2976 87 27 22 chr11 2942521 2942967 -145840505 - LTR7 LTR ERV1 -2 448 1 242 306 51 0 chr11 2943285 2943383 -145840089 + L2 LINE L2 2580 2682 -632 1398 180 48 0 chr11 2943522 2943772 -145839700 + AluJo SINE Alu 37 298 -14 310 326 85 14 chr11 2944042 2944183 -145839289 - L2 LINE L2 -11 3261 3111 1234 226 39 33 chr11 2944291 2944653 -145838819 + L1ME LINE L1 5296 5659 -503 2583 191 52 93 chr11 2944950 2945706 -145837766 - MER50 LTR ERV1 0 734 10 687 215 99 40 chr11 2946171 2946394 -145837078 + MER106A DNA MER1_type 1 236 0 294 296 64 55 chr11 2946417 2946637 -145836835 + HAL1b LINE L1 302 523 -825 370 286 0 36 chr11 2947350 2947462 -145836010 - MER5B DNA MER1_type -70 108 1 180 283 0 0 chr11 2948330 2948376 -145835096 - MER5B DNA MER1_type -126 52 7 489 225 131 25 chr11 2948392 2948552 -145834920 - MER5A DNA MER1_type -6 183 7 4349 168 72 2 chr11 2948582 2949367 -145834105 - MER6 DNA MER2_type 0 865 21 1873 170 0 10 chr11 2949367 2949673 -145833799 + AluJb SINE Alu 1 303 -9 4349 168 72 2 chr11 2949673 2949696 -145833776 - MER6 DNA MER2_type -844 21 1 684 99 0 0 chr11 2949809 2949910 -145833562 - MER6 DNA MER2_type -189 676 576 601 260 99 55 chr11 2950145 2950561 -145832911 - MER20B DNA MER1_type -166 617 184 341 303 26 62 chr11 2951702 2951897 -145831575 - MIR SINE MIR -7 255 68 29 0 0 0 chr11 2951948 2951977 -145831495 + AT_rich Low_complexity Low_complexity 1 29 0 338 293 70 37 chr11 2952541 2952814 -145830658 - MER65A LTR ERV1 -3 442 161 227 214 36 0 chr11 2953007 2953063 -145830409 - L1MC3 LINE L1 -551 7628 7571 264 273 10 30 chr11 2953065 2953164 -145830308 - MLT1F1 LTR MaLR -456 111 15 1146 239 53 67 chr11 2953170 2953894 -145829578 - L1MC3 LINE L1 -720 7459 1421 988 180 5 37 chr11 2953950 2954139 -145829333 + AluJo SINE Alu 1 183 -129 569 274 59 0 chr11 2954150 2954303 -145829169 - L1MC/D LINE L1 -2194 5614 5453 226 275 0 33 chr11 2954372 2954463 -145829009 + MLT1H LTR MaLR 84 171 -378 1256 120 0 22 chr11 2954595 2954778 -145828694 + AluSg/x SINE Alu 122 300 -12 234 0 0 0 chr11 2954783 2954809 -145828663 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 4068 170 82 11 chr11 2954951 2954963 -145828509 - MER6 DNA MER2_type -29 836 826 1898 103 14 21 chr11 2954963 2955244 -145828228 - AluSq SINE Alu -30 283 5 4068 170 82 11 chr11 2955244 2955989 -145827483 - MER6 DNA MER2_type -39 826 20 2085 129 0 22 chr11 2955989 2956300 -145827172 + AluJb SINE Alu 1 304 -8 4068 170 82 11 chr11 2956300 2956322 -145827150 - MER6 DNA MER2_type -845 20 1 674 86 0 38 chr11 2956435 2956498 -145826974 - MER6 DNA MER2_type -189 676 617 1936 144 10 3 chr11 2956498 2956789 -145826683 + AluSx SINE Alu 1 293 -19 674 86 0 38 chr11 2956789 2956830 -145826642 - MER6 DNA MER2_type -248 617 576 376 268 98 49 chr11 2957063 2957369 -145826103 - MER20B DNA MER1_type -195 588 268 313 313 26 62 chr11 2958585 2958780 -145824692 - MIR SINE MIR -7 255 68 27 0 0 0 chr11 2958831 2958858 -145824614 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr11 2959266 2959302 -145824170 + AT_rich Low_complexity Low_complexity 1 36 0 361 290 67 60 chr11 2959610 2959893 -145823579 - MER65A LTR ERV1 0 445 161 281 301 52 15 chr11 2960000 2960136 -145823336 - MER65B LTR ERV1 -390 141 1 189 322 43 52 chr11 2960404 2960519 -145822953 - L2 LINE L2 -1834 1480 1367 240 283 167 43 chr11 2960736 2961150 -145822322 - L2 LINE L2 -2211 1103 639 9704 65 16 82 chr11 2961865 2963348 -145820124 - SVA Other Other 0 1386 1 1256 120 0 22 chr11 2963353 2963536 -145819936 - AluSg/x SINE Alu -12 298 120 267 255 0 32 chr11 2963668 2963762 -145819710 - MLT1H LTR MaLR -378 171 81 502 301 59 0 chr11 2963831 2963984 -145819488 + L1MC3 LINE L1 5453 5614 -2194 959 185 5 37 chr11 2963995 2964184 -145819288 - AluJo SINE Alu -129 183 1 443 278 53 47 chr11 2964240 2964578 -145818894 + L1MDa LINE L1 1421 1760 -4780 * 1978 205 58 42 chr11 2964577 2965124 -145818348 + L1MC3 LINE L1 6675 7230 -555 256 261 45 23 chr11 2965126 2965214 -145818258 + MER65B LTR ERV1 52 141 -390 366 291 65 38 chr11 2965334 2965595 -145817877 + MER65A LTR ERV1 175 442 -3 26 0 0 0 chr11 2966159 2966185 -145817287 + AT_rich Low_complexity Low_complexity 1 26 0 326 308 26 62 chr11 2966236 2966431 -145817041 + MIR SINE MIR 68 255 -7 1855 130 16 16 chr11 2966899 2967221 -145816251 - L1 LINE L1 -908 5238 4917 595 196 0 0 chr11 2967221 2967313 -145816159 - MER2 DNA MER2_type -252 93 2 355 292 10 0 chr11 2967321 2967417 -145816055 + MIR SINE MIR 163 259 -3 670 171 137 0 chr11 2967450 2967567 -145815905 + FLAM_C SINE Alu 1 133 0 4876 146 58 16 chr11 2969125 2970061 -145813411 + L1MA8 LINE L1 5315 6289 -2 366 345 77 5 chr11 2973045 2973254 -145810218 - MIR SINE MIR -5 257 34 636 250 48 30 chr11 2974879 2975222 -145808250 - L1MDa LINE L1 -4811 1571 1173 740 256 26 42 chr11 2975229 2975431 -145808041 - L1MC/D LINE L1 -605 5561 5443 523 273 125 30 chr11 2975445 2975709 -145807763 + MLT1H LTR MaLR 17 305 -244 273 283 81 30 chr11 2975746 2975845 -145807627 + L2 LINE L2 3205 3308 -5 2293 83 7 0 chr11 2976072 2976361 -145807111 + AluSq SINE Alu 1 291 -22 3807 164 45 10 chr11 2976684 2977402 -145806070 - L1MA8 LINE L1 -3 6288 5546 21 0 0 0 chr11 2977681 2977702 -145805770 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 2977814 2977846 -145805626 + AT_rich Low_complexity Low_complexity 1 32 0 239 246 27 27 chr11 2977946 2978056 -145805416 + L1ME LINE L1 5677 5786 -376 199 194 83 69 chr11 2978084 2978156 -145805316 - L2 LINE L2 -5 3308 3236 596 228 10 56 chr11 2978176 2978373 -145805099 + L1MA9 LINE L1 6095 6282 -30 212 333 69 0 chr11 2979466 2979553 -145803919 + MIR SINE MIR 30 122 -86 255 176 39 0 chr11 2979588 2979639 -145803833 - MER58A DNA MER1_type -1 223 171 656 238 0 0 chr11 2979652 2979774 -145803698 - MER58A DNA MER1_type 0 122 1 234 0 0 0 chr11 2980206 2980232 -145803240 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 254 90 15 chr11 2980241 2980308 -145803164 - MIR SINE MIR -190 72 1 251 250 204 0 chr11 2980437 2980545 -145802927 + MIR SINE MIR 69 198 -64 207 339 43 0 chr11 2980865 2980980 -145802492 - L2 LINE L2 -1668 1646 1527 354 307 66 48 chr11 2981174 2981340 -145802132 + MIR SINE MIR 55 223 -39 218 342 34 68 chr11 2981340 2981606 -145801866 + L2 LINE L2 2624 2880 -434 200 368 28 28 chr11 2982098 2982204 -145801268 - MIR SINE MIR -67 141 36 342 0 0 0 chr11 2983345 2983383 -145800089 + (T)n Simple_repeat Simple_repeat 1 38 0 330 235 76 50 chr11 2983480 2983599 -145799873 + MIR SINE MIR 8 129 -133 1505 194 48 50 chr11 2985006 2985402 -145798070 - MLT2C1 LTR ERVL -2 395 1 338 185 15 0 chr11 2985426 2985491 -145797981 - L1 LINE L1 -1092 5054 4989 30 27 0 0 chr11 2985628 2985665 -145797807 + AT_rich Low_complexity Low_complexity 1 37 0 825 180 24 120 chr11 2986225 2986475 -145796997 - LTR8A LTR ERV1 -468 259 34 1849 125 42 0 chr11 2986487 2986774 -145796698 - L1PA16 LINE L1 -5 6161 5863 767 288 132 20 chr11 2986832 2987235 -145796237 - L1ME4a LINE L1 -217 5904 5457 27 0 0 0 chr11 2988970 2988997 -145794475 + AT_rich Low_complexity Low_complexity 1 27 0 1759 110 98 0 chr11 2991645 2991927 -145791545 + AluSp SINE Alu 4 310 0 245 220 20 0 chr11 2992054 2992104 -145791368 - MIR3 SINE MIR -7 201 151 258 270 16 0 chr11 2992106 2992169 -145791303 - MER113 DNA MER1_type? -4 517 454 297 128 0 0 chr11 2992717 2992764 -145790708 + (CA)n Simple_repeat Simple_repeat 2 48 0 7011 124 20 8 chr11 2994589 2996290 -145787182 + L1MA3 LINE L1 4583 6305 0 231 132 0 57 chr11 2996298 2996351 -145787121 + (TAAAAA)n Simple_repeat Simple_repeat 2 51 0 2234 102 0 0 chr11 2996353 2996658 -145786814 + AluSx SINE Alu 1 305 0 180 152 0 0 chr11 2997053 2997086 -145786386 + (TATG)n Simple_repeat Simple_repeat 2 34 0 224 235 0 44 chr11 2997773 2997841 -145785631 + G-rich Low_complexity Low_complexity 6 70 0 22 0 0 0 chr11 2998353 2998375 -145785097 + AT_rich Low_complexity Low_complexity 1 22 0 6518 114 26 48 chr11 2998412 2999758 -145783714 - L1MA3 LINE L1 0 6305 4987 * 7209 54 13 1 chr11 2999732 3000856 -145782616 - L1PA5 LINE L1 -2 6152 5018 367 0 0 0 chr11 3000856 3000897 -145782575 + L1P LINE L1 1264 1304 -4842 * 17633 111 13 19 chr11 3000894 3004802 -145778670 + L1PA7 LINE L1 252 4182 -2279 616 122 0 0 chr11 3004803 3004901 -145778571 - L1P LINE L1 -2793 3353 3256 * 42872 53 8 1 chr11 3004895 3011013 -145772459 - L1PA4 LINE L1 -4 6151 1 517 146 39 0 chr11 3011020 3011123 -145772349 - L1P LINE L1 -2889 3257 3151 11397 78 29 16 chr11 3011123 3013390 -145770082 + L1PA7 LINE L1 4185 6465 -4 227 316 13 0 chr11 3013462 3013541 -145769931 - MIR SINE MIR -110 152 73 1985 181 16 8 chr11 3014599 3014969 -145768503 + L1MD3 LINE L1 7623 7995 0 2520 78 0 0 chr11 3015662 3015970 -145767502 - AluY SINE Alu -3 308 1 575 315 50 0 chr11 3016907 3017088 -145766384 - MIR SINE MIR -65 197 8 231 167 0 0 chr11 3017358 3017400 -145766072 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 357 186 36 14 chr11 3018417 3018557 -145764915 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 3282 237 60 10 chr11 3019399 3020261 -145763211 + L1ME3A LINE L1 5258 6162 -8 318 322 67 52 chr11 3021391 3021658 -145761814 + MARNA DNA Mariner 280 550 -36 527 242 8 8 chr11 3023752 3023876 -145759596 + L2 LINE L2 3187 3310 -3 556 251 70 20 chr11 3025525 3025697 -145757775 + MIR SINE MIR 41 217 -45 1647 85 55 4 chr11 3026777 3027013 -145756459 - L1MA1 LINE L1 0 6302 6055 557 283 108 14 chr11 3027063 3027209 -145756263 + L2 LINE L2 1783 1914 -1400 2301 156 27 16 chr11 3027209 3027580 -145755892 - THE1C LTR MaLR 0 375 1 557 283 108 14 chr11 3027580 3027719 -145755753 + L2 LINE L2 1914 2095 -1219 844 162 45 28 chr11 3027939 3028249 -145755223 + THE1C LTR MaLR 1 375 0 1496 224 55 33 chr11 3028289 3028655 -145754817 - MLT1A2 LTR MaLR 0 374 1 280 275 83 33 chr11 3028935 3029055 -145754417 + LTR16A1 LTR ERVL 330 455 -2 1992 242 92 70 chr11 3029732 3030469 -145753003 + L1MB8 LINE L1 3059 3779 -2367 2020 125 0 0 chr11 3030469 3030750 -145752722 + AluSx SINE Alu 32 312 0 1992 242 92 70 chr11 3030750 3030981 -145752491 + L1MB8 LINE L1 3779 4004 -2142 465 148 34 23 chr11 3030981 3031069 -145752403 + L1MA10 LINE L1 6238 6326 -8 1992 242 92 70 chr11 3031069 3031080 -145752392 + L1MB8 LINE L1 4004 4013 -2133 3396 185 28 17 chr11 3031080 3031771 -145751701 + L1MB8 LINE L1 5481 6178 0 1992 242 92 70 chr11 3031771 3031855 -145751617 + L1MB8 LINE L1 4013 4147 -1999 525 280 63 5 chr11 3031863 3032052 -145751420 + L1ME2 LINE L1 4579 4778 -1368 1314 237 188 26 chr11 3032069 3032332 -145751140 + L1ME2 LINE L1 4856 5075 -1089 1614 151 3 69 chr11 3032332 3032651 -145750821 + AluJb SINE Alu 1 298 -14 1314 237 188 26 chr11 3032651 3033397 -145750075 + L1ME2 LINE L1 5075 6087 -77 1670 137 78 18 chr11 3033397 3033681 -145749791 - AluJo SINE Alu -11 301 1 1314 237 188 26 chr11 3033681 3033774 -145749698 + L1ME2 LINE L1 6087 6164 0 236 288 17 0 chr11 3034090 3034149 -145749323 + L2 LINE L2 3196 3255 -17 1098 219 44 9 chr11 3034446 3034674 -145748798 - MER8 DNA MER2_type -3 236 1 23 33 0 0 chr11 3036757 3036787 -145746685 + AT_rich Low_complexity Low_complexity 1 30 0 425 250 43 43 chr11 3039089 3039253 -145744219 + MIR SINE MIR 23 186 -76 928 122 122 0 chr11 3039948 3040104 -145743368 - MER30 DNA MER1_type -55 175 1 264 315 0 0 chr11 3040177 3040269 -145743203 + MIR SINE MIR 167 258 -4 371 323 65 26 chr11 3040282 3040437 -145743035 - L2 LINE L2 -8 3264 3104 237 304 244 7 chr11 3040753 3040888 -145742584 + MIR SINE MIR 83 249 -13 421 277 62 28 chr11 3041515 3041692 -145741780 - L2 LINE L2 -8 3305 3123 1254 161 70 21 chr11 3041693 3041935 -145741537 + L1M2 LINE L1 5459 5712 -579 4361 144 57 32 chr11 3041947 3042280 -145741192 + L1MA8 LINE L1 5458 5781 -510 216 0 0 0 chr11 3042280 3042304 -145741168 + (CA)n Simple_repeat Simple_repeat 1 24 0 4361 144 57 32 chr11 3042304 3042783 -145740689 + L1MA8 LINE L1 5781 6290 -1 1154 304 82 25 chr11 3042789 3043588 -145739884 - L2 LINE L2 -179 3134 2292 7156 46 17 2 chr11 3043593 3044489 -145738983 - L1PA5 LINE L1 -1027 5119 4211 7803 46 3 1 chr11 3044489 3045507 -145737965 + L1PA5 LINE L1 5136 6152 -2 253 157 229 29 chr11 3045507 3045577 -145737895 - MER5A DNA MER1_type -97 92 9 192 77 0 0 chr11 3045617 3045643 -145737829 + (A)n Simple_repeat Simple_repeat 1 26 0 394 259 299 11 chr11 3045645 3045919 -145737553 - L2 LINE L2 -1028 2286 1934 1222 134 24 14 chr11 3045923 3046132 -145737340 + L1PB1 LINE L1 5941 6151 0 1959 190 61 10 chr11 3046146 3046831 -145736641 + L1M3 LINE L1 4898 5614 -566 228 220 125 56 chr11 3047323 3047485 -145735987 - MIR SINE MIR -70 192 17 570 147 0 40 chr11 3047646 3047796 -145735676 + (AGGGGG)n Simple_repeat Simple_repeat 5 148 0 1400 166 14 0 chr11 3048984 3049207 -145734265 + MER1B DNA MER1_type 1 226 -71 1072 124 16 32 chr11 3050161 3050346 -145733126 + L1PA13 LINE L1 5982 6163 0 600 63 13 0 chr11 3050822 3050901 -145732571 - MADE1 DNA Mariner 0 80 1 1056 294 95 27 chr11 3051116 3051717 -145731755 - L2 LINE L2 -422 2892 2251 205 191 16 48 chr11 3051777 3051840 -145731632 + GA-rich Low_complexity Low_complexity 5 65 0 314 329 72 6 chr11 3051851 3052018 -145731454 - L2 LINE L2 -1424 1890 1713 291 397 49 0 chr11 3054872 3055056 -145728416 - L3 LINE CR1 -61 1516 1324 3591 166 68 7 chr11 3055774 3056493 -145726979 - L1MA4 LINE L1 -11 6289 5527 3839 122 28 18 chr11 3056493 3057100 -145726372 + MER50-int LTR ERV1 6591 7203 -2 2533 185 41 126 chr11 3057100 3057717 -145725755 + MER50 LTR ERV1 10 549 -185 2029 152 3 0 chr11 3057717 3058026 -145725446 - AluSx SINE Alu 0 312 3 2533 185 41 126 chr11 3058026 3058187 -145725285 + MER50 LTR ERV1 549 722 -12 1374 174 123 119 chr11 3058227 3058772 -145724700 + LTR10B LTR ERV1 1 547 0 7321 250 41 28 chr11 3058772 3063614 -145719858 + LTR10B-int LTR ERV1 5 3922 -2727 803 174 48 48 chr11 3063623 3063790 -145719682 - LTR5 LTR ERVK -14 955 789 598 174 0 109 chr11 3063834 3063972 -145719500 - HERVKC4 LTR ERVK -4526 736 614 * 4039 172 20 6 chr11 3063942 3064644 -145718828 - HERVKC4 LTR ERVK -6531 712 1 3623 204 21 63 chr11 3064656 3065649 -145717823 - LTR5 LTR ERVK -14 955 5 3898 277 13 17 chr11 3065651 3066719 -145716753 + LTR10B-int LTR ERV1 4941 6004 -1781 6404 239 21 27 chr11 3066832 3068424 -145715048 + LTR10B-int LTR ERV1 5068 6649 0 338 153 68 126 chr11 3068478 3068668 -145714804 + LTR10B LTR ERV1 107 285 -262 1319 174 41 16 chr11 3068727 3068969 -145714503 + LTR10B LTR ERV1 300 547 0 4234 236 117 92 chr11 3068970 3069557 -145713915 + MSTC-int LTR MaLR 76 647 -1088 3743 158 49 29 chr11 3069557 3070215 -145713257 + LTR51 LTR ERV1 1 671 0 4234 236 117 92 chr11 3070215 3071245 -145712227 + MSTC-int LTR MaLR 647 1733 -2 2224 146 72 46 chr11 3071252 3071669 -145711803 + MSTC LTR MaLR 1 428 0 184 333 36 12 chr11 3073552 3073636 -145709836 - L2 LINE L2 -36 3277 3192 447 327 146 16 chr11 3074004 3074374 -145709098 - L2 LINE L2 -640 2674 2257 1581 294 153 59 chr11 3074473 3075739 -145707733 + L2 LINE L2 1614 2987 -285 289 297 156 23 chr11 3076596 3076852 -145706620 - L2 LINE L2 -1160 2154 1865 2138 91 0 0 chr11 3077089 3077376 -145706096 + AluY SINE Alu 1 287 -24 202 193 91 57 chr11 3077433 3077521 -145705951 - MIR SINE MIR -78 184 94 543 222 0 128 chr11 3078234 3078468 -145705004 + MER3 DNA MER1_type 1 204 -5 359 323 63 26 chr11 3080352 3080541 -145702931 - L3 LINE CR1 -59 1518 1323 2043 189 27 5 chr11 3080966 3081341 -145702131 + MLT1B LTR MaLR 3 385 -5 2717 182 107 23 chr11 3081344 3081860 -145701612 + MLT1B-int LTR MaLR 5 678 -693 2186 157 18 32 chr11 3081860 3082294 -145701178 + L1MA5 LINE L1 5868 6295 -5 2717 182 107 23 chr11 3082294 3082465 -145701007 + MLT1B-int LTR MaLR 678 833 -538 1469 212 119 11 chr11 3082755 3083109 -145700363 + MLT1B-int LTR MaLR 978 1369 -2 1746 153 150 23 chr11 3083111 3083457 -145700015 + MLT1B LTR MaLR 1 390 0 674 273 73 78 chr11 3084348 3084706 -145698766 + L2 LINE L2 2433 2790 -524 1256 144 158 78 chr11 3084706 3085053 -145698419 + THE1C LTR MaLR 1 375 0 674 273 73 78 chr11 3085053 3085078 -145698394 + L2 LINE L2 2790 2814 -500 346 306 51 25 chr11 3085306 3085502 -145697970 + L1MEc LINE L1 1620 1820 -4576 194 313 50 0 chr11 3087286 3087366 -145696106 - L2 LINE L2 -679 2635 2552 584 297 71 53 chr11 3088402 3088813 -145694659 - L2 LINE L2 -635 2679 2262 2086 301 154 32 chr11 3088915 3089006 -145694466 + L2 LINE L2 1601 1680 -1634 372 22 0 0 chr11 3089006 3089051 -145694421 + (CA)n Simple_repeat Simple_repeat 2 46 0 2086 301 154 32 chr11 3089051 3090186 -145693286 + L2 LINE L2 1680 2977 -337 308 336 107 24 chr11 3091076 3091412 -145692060 - L2 LINE L2 -1240 2074 1711 187 304 83 48 chr11 3091489 3091657 -145691815 - MIR SINE MIR -38 224 51 222 322 33 0 chr11 3091904 3091994 -145691478 - MIR SINE MIR -18 244 152 30 69 0 0 chr11 3091994 3092052 -145691420 + AT_rich Low_complexity Low_complexity 1 58 0 506 246 222 0 chr11 3092380 3092551 -145690921 + MER3 DNA MER1_type 1 209 0 1719 164 134 3 chr11 3094845 3094937 -145688535 + MER7A DNA MER2_type 3 82 -2956 776 98 98 8 chr11 3094937 3095060 -145688412 - L1PA13 LINE L1 -5 6158 6025 1719 164 134 3 chr11 3095060 3095272 -145688200 + MER7A DNA MER2_type 82 345 -1 338 264 74 31 chr11 3095291 3095454 -145688018 + MLT1I LTR MaLR 1 170 -239 4118 148 26 6 chr11 3095454 3096117 -145687355 + L1PA13 LINE L1 5482 6157 -6 767 119 0 9 chr11 3096210 3096319 -145687153 + L1PA13 LINE L1 5777 5884 -279 235 257 14 57 chr11 3096319 3096389 -145687083 + MLT1I LTR MaLR 177 243 -166 21 36 0 0 chr11 3096453 3096481 -145686991 + AT_rich Low_complexity Low_complexity 1 28 0 392 237 44 51 chr11 3096577 3096705 -145686767 + MLT1I LTR MaLR 278 439 -11 6939 117 26 16 chr11 3096923 3097920 -145685552 - LTR13 LTR ERVK 0 1007 1 10469 230 16 11 chr11 3097920 3100213 -145683259 - HERVK13 LTR ERVK 0 8116 5812 3715 231 126 12 chr11 3100207 3101172 -145682300 - HERVK13 LTR ERVK -2473 5643 4569 * 555 289 6 0 chr11 3101162 3101321 -145682151 - HERVK13 LTR ERVK -3990 4126 3967 * 1150 208 73 118 chr11 3101326 3101943 -145681529 - HERVK13 LTR ERVK -6814 1302 714 926 119 15 0 chr11 3101956 3102090 -145681382 - HERVK13 LTR ERVK -7907 209 74 906 179 0 6 chr11 3102318 3102480 -145680992 - L1P LINE L1 -1132 5014 4854 2223 162 65 25 chr11 3102487 3102931 -145680541 - L1MA8 LINE L1 -345 6967 6506 * 8671 220 112 28 chr11 3102908 3103128 -145680344 - L1MA8 LINE L1 -1431 5736 5536 2230 78 7 46 chr11 3103128 3103434 -145680038 - AluY SINE Alu -17 294 1 8671 220 112 28 chr11 3103434 3103920 -145679552 - L1MA8 LINE L1 -1631 5536 5093 1805 143 7 7 chr11 3103920 3104206 -145679266 - AluJb SINE Alu -15 297 12 8671 220 112 28 chr11 3104206 3107579 -145675893 - L1MA8 LINE L1 -2074 5093 1622 285 185 87 0 chr11 3108586 3108678 -145674794 + Charlie2 DNA MER1_type 2690 2789 -73 2254 198 105 7 chr11 3109719 3110149 -145673323 + MER70A LTR ERVL 1 472 0 1041 140 91 0 chr11 3110468 3110654 -145672818 - L1PA12 LINE L1 -2093 4053 3851 * 5228 151 51 7 chr11 3110651 3111243 -145672229 + L1PA12 LINE L1 4032 4681 -1465 507 175 0 0 chr11 3111243 3111323 -145672149 + MADE1 DNA Mariner 1 80 0 5228 151 51 7 chr11 3111323 3111656 -145671816 + L1PA12 LINE L1 4681 4998 -1148 2014 43 4 0 chr11 3111656 3111875 -145671597 + L1PA5 LINE L1 5919 6149 -5 5981 92 68 2 chr11 3111899 3112981 -145670491 + L1PA12 LINE L1 5020 6164 -4 1191 293 82 25 chr11 3113548 3114105 -145669367 - MLT2F LTR ERVL 0 628 7 217 306 197 0 chr11 3116142 3116325 -145667147 - MIR SINE MIR -30 232 14 946 110 0 0 chr11 3118670 3118797 -145664675 + L1PA14 LINE L1 6023 6149 -12 1767 113 13 0 chr11 3120752 3120991 -145662481 - AluSc SINE Alu -16 293 52 233 277 0 15 chr11 3122049 3122114 -145661358 + MIR SINE MIR 88 151 -111 423 0 0 0 chr11 3122521 3122568 -145660904 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 250 73 15 chr11 3122801 3122869 -145660603 + MIR SINE MIR 123 194 -68 1505 113 50 4 chr11 3124039 3124299 -145659173 - L1PA8A LINE L1 -465 5666 5469 2657 112 32 10 chr11 3124320 3124723 -145658749 - L1PA8 LINE L1 -7 6165 5754 1092 242 125 50 chr11 3124723 3125140 -145658332 + MLT2B1 LTR ERVL 72 519 -1 312 182 91 0 chr11 3126022 3126088 -145657384 + L1MEc LINE L1 2312 2383 -4013 14761 178 103 47 chr11 3126150 3127800 -145655672 + L1MA1 LINE L1 16 1572 -5993 559 153 41 0 chr11 3127800 3127898 -145655574 + AluSg/x SINE Alu 211 312 0 14761 178 103 47 chr11 3127898 3129246 -145654226 + L1MA1 LINE L1 1572 2843 -4722 2495 117 45 17 chr11 3129246 3129598 -145653874 + THE1B LTR MaLR 1 362 -2 14761 178 103 47 chr11 3129598 3129774 -145653698 + L1MA1 LINE L1 2843 3008 -4557 2016 132 10 3 chr11 3129774 3130070 -145653402 + AluSx SINE Alu 1 298 -14 14761 178 103 47 chr11 3130070 3130760 -145652712 + L1MA1 LINE L1 3008 3658 -3907 1786 236 126 37 chr11 3130760 3131269 -145652203 + MLT2B3 LTR ERVL 1 554 0 14761 178 103 47 chr11 3131269 3131575 -145651897 + L1MA1 LINE L1 3658 4517 -3048 1423 129 62 17 chr11 3131544 3131934 -145651538 + L1MA1 LINE L1 6673 7044 -677 * 1843 153 81 36 chr11 3131934 3132293 -145651179 + THE1C LTR MaLR 1 375 0 1423 129 62 17 chr11 3132293 3132848 -145650624 + L1MA1 LINE L1 7044 7721 0 714 251 100 39 chr11 3132855 3133265 -145650207 + L1MEc LINE L1 2380 2814 -3401 256 188 50 38 chr11 3133282 3133362 -145650110 - L1 LINE L1 -2635 3511 3431 2088 263 91 12 chr11 3133368 3134189 -145649283 - L1P LINE L1 -2762 3384 2499 949 201 51 55 chr11 3134195 3134252 -145649220 + L1MA9 LINE L1 5512 5568 -744 1305 179 236 23 chr11 3134252 3134603 -145648869 - MSTA LTR MaLR -2 426 1 949 201 51 55 chr11 3134603 3134819 -145648653 + L1MA9 LINE L1 5568 5784 -528 949 228 166 13 chr11 3134823 3135209 -145648263 + L1MA9 LINE L1 5825 6269 -43 36372 93 21 17 chr11 3135295 3138569 -145644903 + L1PA6 LINE L1 2 3315 -2839 2392 90 0 3 chr11 3138569 3138880 -145644592 + AluY SINE Alu 2 311 0 36372 93 21 17 chr11 3138880 3141728 -145641744 + L1PA6 LINE L1 3315 6150 -4 239 325 136 31 chr11 3141884 3142075 -145641397 - L2 LINE L2 -2728 586 376 205 337 51 10 chr11 3142229 3142327 -145641145 + MIR SINE MIR 66 167 -95 828 191 82 0 chr11 3142328 3142475 -145640997 + FRAM SINE Alu 1 151 -25 2792 157 29 15 chr11 3142529 3143008 -145640464 + L1PB2 LINE L1 5663 6148 -3 289 300 20 30 chr11 3144546 3144646 -145638826 - MIR SINE MIR -140 122 24 23 0 0 0 chr11 3145604 3145627 -145637845 + AT_rich Low_complexity Low_complexity 1 23 0 182 376 116 29 chr11 3145640 3145986 -145637486 - L2 LINE L2 -41 3231 2856 692 266 71 38 chr11 3147101 3147531 -145635941 - LTR33 LTR ERVL -40 481 10 386 287 64 44 chr11 3150935 3151157 -145632315 - MIR SINE MIR -15 247 15 534 299 117 28 chr11 3152150 3152508 -145630964 + LTR16B LTR ERVL 15 404 -60 7513 28 14 29 chr11 3152545 3153903 -145629569 - L1PA4 LINE L1 -3 6152 4789 257 339 112 13 chr11 3153927 3154160 -145629312 + HERV16 LTR ERVL 313 568 -4428 305 252 73 24 chr11 3154259 3154382 -145629090 + HERV16 LTR ERVL 719 847 -4149 1906 140 107 6 chr11 3154414 3154742 -145628730 + LTR1B LTR ERV1 44 404 -422 1023 224 38 0 chr11 3154739 3154949 -145628523 + LTR1B LTR ERV1 599 816 -10 * 2460 216 67 34 chr11 3154951 3155507 -145627965 + HUERS-P2 LTR ERV1 2 575 -2513 * 13333 146 55 49 chr11 3155504 3157878 -145625594 + HUERS-P2 LTR ERV1 701 3088 0 4476 152 58 14 chr11 3157878 3158661 -145624811 + LTR1B LTR ERV1 1 817 -9 334 364 94 19 chr11 3158840 3159148 -145624324 + HERV16 LTR ERVL 1246 1576 -3420 396 303 98 0 chr11 3159319 3159451 -145624021 + HERV16 LTR ERVL 1854 1998 -2998 1294 319 91 20 chr11 3159680 3160715 -145622757 + HERV16 LTR ERVL 2543 3654 -2000 503 349 53 11 chr11 3160734 3161015 -145622457 + HERV16 LTR ERVL 3400 3692 -1304 692 319 85 54 chr11 3161033 3161864 -145621608 + HERV16 LTR ERVL 4017 4906 -612 348 283 87 91 chr11 3161919 3162413 -145621059 + HERV16 LTR ERVL 4505 4996 0 739 307 101 4 chr11 3162413 3162690 -145620782 + LTR16B LTR ERVL 1 304 -160 27312 126 40 61 chr11 3162988 3169305 -145614167 + L1PA8 LINE L1 1 6169 -3 412 195 62 70 chr11 3170076 3170204 -145613268 + MER34B LTR ERV1 5 131 -434 370 177 177 10 chr11 3170437 3170533 -145612939 + MER34B LTR ERV1 450 561 -4 1815 120 106 0 chr11 3171305 3171580 -145611892 - AluSp SINE Alu -9 304 1 3380 137 131 17 chr11 3171955 3172648 -145610824 - MER4E LTR ERV1 -7 772 1 1205 128 11 6 chr11 3172822 3173002 -145610470 + LTR1B LTR ERV1 1 181 -645 2762 120 84 50 chr11 3173357 3173882 -145609590 + LTR1B LTR ERV1 282 824 -2 1029 276 138 58 chr11 3174622 3175353 -145608119 + HERV16 LTR ERVL 1841 2630 -2366 338 215 25 13 chr11 3175390 3175469 -145608003 + MER3 DNA MER1_type 29 108 -101 1162 244 95 15 chr11 3176337 3176738 -145606734 - L1 LINE L1 -3389 2757 2325 586 217 151 7 chr11 3176905 3177057 -145606415 + MLT1A1 LTR MaLR 1 174 -191 713 162 184 11 chr11 3177614 3177793 -145605679 - L1PB4 LINE L1 -4 6152 5943 1003 159 19 0 chr11 3178323 3178480 -145604992 - AluSp SINE Alu -17 296 137 2165 117 7 3 chr11 3178480 3178779 -145604693 - AluSc SINE Alu -9 300 1 220 216 0 0 chr11 3179339 3179390 -145604082 + A-rich Low_complexity Low_complexity 1 51 0 1834 131 3 11 chr11 3179391 3179673 -145603799 - AluSp SINE Alu -33 280 1 847 329 54 19 chr11 3180840 3181250 -145602222 - LTR16A LTR ERVL 0 450 27 3557 147 65 7 chr11 3181321 3181901 -145601571 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr11 3182638 3182664 -145600808 + (CA)n Simple_repeat Simple_repeat 1 26 0 362 312 24 0 chr11 3183266 3183391 -145600081 - MLT1F1 LTR MaLR -372 195 68 218 322 91 16 chr11 3185128 3185249 -145598223 + MIR SINE MIR 105 234 -28 22 0 0 0 chr11 3186269 3186291 -145597181 + AT_rich Low_complexity Low_complexity 1 22 0 2023 131 23 7 chr11 3186291 3186597 -145596875 - AluSx SINE Alu -1 311 1 278 225 45 81 chr11 3186764 3186875 -145596597 + L1ME3 LINE L1 6048 6154 -8 259 182 45 34 chr11 3187033 3187121 -145596351 + L1M4 LINE L1 3174 3262 -2884 581 326 38 4 chr11 3188826 3189065 -145594407 - MIR SINE MIR -14 248 2 294 310 39 26 chr11 3192694 3192849 -145590623 + MIR SINE MIR 105 261 -1 240 277 0 96 chr11 3193974 3194068 -145589404 + L1ME3 LINE L1 6046 6130 -32 612 304 78 4 chr11 3196030 3196260 -145587212 - MIR SINE MIR -14 248 2 22 35 0 0 chr11 3197208 3197237 -145586235 + AT_rich Low_complexity Low_complexity 1 29 0 3766 34 0 2 chr11 3199846 3200290 -145583182 + L1PA4 LINE L1 5713 6155 0 233 297 47 0 chr11 3201921 3201985 -145581487 - L2 LINE L2 -51 3221 3155 2357 78 0 3 chr11 3203078 3203373 -145580099 + AluY SINE Alu 1 294 -17 215 330 106 11 chr11 3206913 3207007 -145576465 - MIR SINE MIR -75 133 31 534 204 10 19 chr11 3207540 3207643 -145575829 + MER5A DNA MER1_type 9 110 -79 470 287 139 3 chr11 3207804 3208001 -145575471 - MIR SINE MIR -27 235 15 192 238 71 0 chr11 3208478 3208520 -145574952 + MIR SINE MIR 105 149 -59 367 259 89 30 chr11 3210255 3210390 -145573082 + L2 LINE L2 3129 3271 -1 505 203 62 23 chr11 3210468 3210596 -145572876 - MIR SINE MIR 0 262 130 396 204 29 48 chr11 3211075 3211178 -145572294 + L2 LINE L2 3169 3269 -44 320 244 150 33 chr11 3211406 3211619 -145571853 + HAL1 LINE L1 2270 2507 0 261 0 0 0 chr11 3212578 3212607 -145570865 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 228 349 66 9 chr11 3213204 3213310 -145570162 - L2 LINE L2 -15 3257 3146 252 0 0 0 chr11 3214620 3214648 -145568824 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr11 3214953 3214977 -145568495 + AT_rich Low_complexity Low_complexity 1 24 0 231 227 34 11 chr11 3215113 3215201 -145568271 + T-rich Low_complexity Low_complexity 5 94 0 342 337 59 19 chr11 3215676 3216030 -145567442 - LTR67 LTR ERVL -19 538 137 456 323 45 45 chr11 3216157 3216423 -145567049 + MLT1I LTR MaLR 98 363 -46 275 297 42 34 chr11 3216458 3216576 -145566896 - LTR67 LTR ERVL -437 120 2 1076 48 0 0 chr11 3216867 3216993 -145566479 + L1PA4 LINE L1 6027 6152 -3 22 35 0 0 chr11 3216993 3217022 -145566450 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 3217069 3217090 -145566382 + AT_rich Low_complexity Low_complexity 1 21 0 1362 203 22 120 chr11 3217287 3217687 -145565785 - MLT1A1 LTR MaLR 0 365 5 195 375 71 5 chr11 3219302 3219486 -145563986 - L2 LINE L2 -1647 1667 1472 746 284 50 0 chr11 3219620 3219821 -145563651 + LTR16C LTR ERVL 150 360 -131 346 277 134 9 chr11 3219814 3219926 -145563546 + LTR16C LTR ERVL 237 362 -129 * 816 74 0 40 chr11 3219927 3220076 -145563396 + (TCCCC)n Simple_repeat Simple_repeat 3 145 0 14453 104 40 17 chr11 3220178 3222473 -145560999 - L1P LINE L1 -1882 4264 1917 5613 111 15 1 chr11 3222475 3223686 -145559786 + L1PA11 LINE L1 4801 6024 -150 303 190 0 147 chr11 3223689 3223805 -145559667 - LTR57-int LTR ERVL -4211 1132 1034 * 309 187 0 138 chr11 3223706 3223829 -145559643 - MER4-int LTR ERV1 -7021 1099 994 * 506 203 25 131 chr11 3223819 3224055 -145559417 - MER4-int LTR ERV1 -4554 2044 1834 876 236 69 29 chr11 3224055 3224301 -145559171 - MER34C LTR ERV1 -172 413 158 539 231 7 21 chr11 3224301 3224444 -145559028 - MER4-int LTR ERV1 -4132 991 851 2178 164 36 68 chr11 3224561 3225062 -145558410 - MER4-int LTR ERV1 -6705 832 348 2687 127 65 59 chr11 3225068 3225617 -145557855 + LTR9 LTR ERV1 1 766 -28 895 186 5 69 chr11 3225617 3225805 -145557667 + HUERS-P3b LTR ERV1 358 533 -6885 3116 161 63 14 chr11 3225839 3226409 -145557063 + HUERS-P3b LTR ERV1 742 1339 -7580 * 3594 121 0 4 chr11 3226401 3226896 -145556576 + HUERS-P3b LTR ERV1 1532 2024 -5394 1410 48 0 0 chr11 3226893 3227059 -145556413 + HUERS-P3b LTR ERV1 2477 2642 -4776 * 1612 155 49 0 chr11 3227059 3227323 -145556149 - LTR8 LTR ERV1 -250 441 165 376 272 24 0 chr11 3227445 3227570 -145555902 + LTR16C LTR ERVL 364 491 0 270 0 0 0 chr11 3227663 3227693 -145555779 + (T)n Simple_repeat Simple_repeat 1 30 0 2440 130 107 18 chr11 3228203 3228594 -145554878 - MSTA LTR MaLR -2 426 1 366 241 28 35 chr11 3228632 3228773 -145554699 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 200 244 73 49 chr11 3228895 3228977 -145554495 + MIR SINE MIR 95 178 -84 291 304 13 0 chr11 3229188 3229267 -145554205 + L2 LINE L2 3187 3266 -6 1493 109 100 9 chr11 3230302 3230531 -145552941 + L1PB1 LINE L1 5900 6149 -2 801 168 35 0 chr11 3230681 3230824 -145552648 + MER57A LTR ERV1 1 148 -255 9366 24 0 0 chr11 3231179 3232260 -145551212 - L1P LINE L1 -867 5279 4199 3557 21 2 0 chr11 3232255 3232826 -145550646 + L1PA2 LINE L1 5406 6155 0 * 1218 202 32 4 chr11 3233071 3233318 -145550154 + MER57A LTR ERV1 150 403 0 1384 262 17 26 chr11 3233318 3233665 -145549807 + MER57A-int LTR ERV1 1 344 -7193 1114 157 6 0 chr11 3233666 3233838 -145549634 - LTR9 LTR ERV1 0 612 440 9908 104 24 11 chr11 3233860 3234650 -145548822 - HUERS-P3b LTR ERV1 -1733 5685 4867 2130 130 3 10 chr11 3234650 3234957 -145548515 - AluSx SINE Alu -7 305 1 9908 104 24 11 chr11 3234957 3235648 -145547824 - HUERS-P3b LTR ERV1 -2551 4867 4186 3318 78 32 34 chr11 3235646 3236118 -145547354 - HUERS-P3b LTR ERV1 -3875 3543 3073 * 2534 177 30 2 chr11 3236118 3236547 -145546925 + LTR8 LTR ERV1 1 441 -250 1410 48 0 0 chr11 3236547 3236713 -145546759 - HUERS-P3b LTR ERV1 -4776 2642 2477 * 3594 121 0 4 chr11 3236710 3237205 -145546267 - HUERS-P3b LTR ERV1 -5394 2024 1532 3116 161 63 14 chr11 3237197 3237767 -145545705 - HUERS-P3b LTR ERV1 -7580 1339 742 * 895 186 5 69 chr11 3237801 3237989 -145545483 - HUERS-P3b LTR ERV1 -6885 533 358 2687 127 65 59 chr11 3237989 3238538 -145544934 - LTR9 LTR ERV1 -28 766 1 2178 164 36 68 chr11 3238544 3239045 -145544427 + LOR1-int LTR ERV1 348 832 -6705 514 225 14 21 chr11 3239162 3239304 -145544168 + LOR1-int LTR ERV1 851 991 -4132 876 236 69 29 chr11 3239304 3239550 -145543922 + MER34C LTR ERV1 158 413 -172 506 203 25 131 chr11 3239550 3239786 -145543686 + LOR1-int LTR ERV1 1834 2044 -4554 309 187 0 138 chr11 3239776 3239899 -145543573 + LOR1-int LTR ERV1 994 1099 -7021 * 303 190 0 147 chr11 3239800 3239916 -145543556 + LTR57-int LTR ERVL 1034 1132 -4211 * 5613 111 15 1 chr11 3239919 3241130 -145542342 - L1PA11 LINE L1 -150 6024 4801 5844 92 18 23 chr11 3241132 3241988 -145541484 + L1P LINE L1 1917 2767 -3379 3128 94 0 9 chr11 3241989 3242413 -145541059 + L1P LINE L1 3823 4242 -1904 225 0 0 0 chr11 3242450 3242475 -145540997 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 216 97 0 0 chr11 3242508 3242539 -145540933 + (A)n Simple_repeat Simple_repeat 1 31 0 8626 95 17 0 chr11 3242547 3244466 -145539006 + L1PA8 LINE L1 4233 6168 -4 526 200 20 10 chr11 3244466 3244559 -145538913 - L1MC/D LINE L1 -654 5657 5561 565 238 8 8 chr11 3244705 3244827 -145538645 + L2 LINE L2 3191 3312 -1 1608 274 89 21 chr11 3244833 3245724 -145537748 - L1MC/D LINE L1 -1052 5163 4213 24 0 0 0 chr11 3246411 3246435 -145537037 + AT_rich Low_complexity Low_complexity 1 24 0 470 348 41 88 chr11 3246764 3247526 -145535946 - L2 LINE L2 -340 2974 2249 257 306 184 10 chr11 3247730 3248018 -145535454 + L2 LINE L2 1732 2069 -1245 228 163 0 0 chr11 3249120 3249163 -145534309 + (TG)n Simple_repeat Simple_repeat 2 44 0 2054 130 0 3 chr11 3250119 3250426 -145533046 - AluSg SINE Alu -3 307 2 183 333 111 26 chr11 3250440 3250557 -145532915 - MER5B DNA MER1_type -45 133 7 1530 92 0 0 chr11 3253719 3253914 -145529558 + AluSc SINE Alu 106 300 -9 318 265 39 10 chr11 3253980 3254082 -145529390 - L1MC/D LINE L1 -6135 261 157 248 310 28 14 chr11 3255678 3255820 -145527652 + (CTGGGG)n Simple_repeat Simple_repeat 3 146 0 547 298 104 26 chr11 3256065 3256581 -145526891 + L2 LINE L2 2684 3252 -61 209 133 0 0 chr11 3256696 3256726 -145526746 + L2 LINE L2 3019 3048 -265 228 260 52 0 chr11 3257842 3257919 -145525553 + MIR SINE MIR 118 198 -64 375 348 51 6 chr11 3258188 3258346 -145525126 + MIR SINE MIR 20 184 -78 240 345 73 18 chr11 3260750 3260915 -145522557 - L2 LINE L2 -375 2939 2766 763 275 37 20 chr11 3261125 3261369 -145522103 - MIR SINE MIR -13 249 2 1408 150 18 4 chr11 3262113 3262340 -145521132 + MER46A DNA MER2_type 1 230 -6 1592 235 28 43 chr11 3262596 3263056 -145520416 - LTR16A1 LTR ERVL -2 455 3 293 279 0 106 chr11 3265387 3265548 -145517924 - MIR SINE MIR -41 221 78 273 286 61 68 chr11 3265773 3265920 -145517552 - MER5B DNA MER1_type -30 148 3 202 255 28 166 chr11 3266315 3266460 -145517012 + L2 LINE L2 3123 3247 -25 667 287 135 45 chr11 3266465 3266820 -145516652 + MLT1J1 LTR MaLR 8 394 -52 964 348 91 55 chr11 3267109 3267747 -145515725 + L2 LINE L2 1556 2170 -1143 348 24 0 0 chr11 3267747 3267788 -145515684 + (CA)n Simple_repeat Simple_repeat 1 41 0 964 348 91 55 chr11 3267788 3268611 -145514861 + L2 LINE L2 2170 3062 -251 2175 117 0 3 chr11 3268656 3268964 -145514508 - AluSx SINE Alu -5 307 1 1675 246 96 25 chr11 3269017 3269589 -145513883 + MLT1E2 LTR MaLR 11 623 -3 213 329 13 40 chr11 3269637 3269713 -145513759 - L2 LINE L2 -58 3255 3182 494 213 89 78 chr11 3270083 3270507 -145512965 - LTR4 LTR ERV1 0 596 112 198 286 63 0 chr11 3271080 3271143 -145512329 - L2 LINE L2 -9 3263 3197 223 314 95 0 chr11 3271475 3271580 -145511892 + L2 LINE L2 2770 2884 -430 801 171 35 6 chr11 3273427 3273597 -145509875 - L1MA8 LINE L1 -2 6289 6115 198 0 0 0 chr11 3273599 3273621 -145509851 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 228 182 0 0 chr11 3273627 3273671 -145509801 + CT-rich Low_complexity Low_complexity 2 45 0 1791 174 0 28 chr11 3273681 3274002 -145509470 - AluJo SINE Alu 0 312 1 184 250 16 31 chr11 3274230 3274294 -145509178 - MIR SINE MIR -40 222 160 2123 122 6 10 chr11 3274407 3274719 -145508753 + AluSp SINE Alu 1 311 -2 426 20 0 0 chr11 3274753 3274804 -145508668 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 30 0 0 chr11 3275504 3275537 -145507935 + AT_rich Low_complexity Low_complexity 1 33 0 4923 148 52 9 chr11 3278289 3278688 -145504784 + L1MA9 LINE L1 5370 5751 -561 375 78 0 0 chr11 3278688 3278739 -145504733 + (CA)n Simple_repeat Simple_repeat 1 51 0 4923 148 52 9 chr11 3278739 3279188 -145504284 + L1MA9 LINE L1 5751 6254 -58 1392 165 0 0 chr11 3279190 3279414 -145504058 + L1PA16 LINE L1 5943 6166 0 421 171 0 0 chr11 3279416 3279492 -145503980 + L1MA9 LINE L1 6237 6312 0 894 205 72 0 chr11 3279501 3279696 -145503776 - L1MD1 LINE L1 -112 6524 6316 567 233 7 7 chr11 3279689 3279839 -145503633 - L1MD1 LINE L1 -873 5667 5518 * 3406 252 99 20 chr11 3279868 3280358 -145503114 - L1MD1 LINE L1 -1873 4667 4217 3507 153 53 14 chr11 3280358 3280394 -145503078 - L1MB2 LINE L1 -16 6155 6122 2391 86 7 3 chr11 3280394 3280698 -145502774 - AluSg SINE Alu -5 305 1 3507 153 53 14 chr11 3280698 3281288 -145502184 - L1MB2 LINE L1 -49 6122 5505 3406 252 99 20 chr11 3281288 3282205 -145501267 - L1MD1 LINE L1 -2323 4217 3149 2735 189 48 93 chr11 3282294 3283061 -145500411 - L1MD1 LINE L1 -5807 733 1 186 298 18 0 chr11 3283656 3283713 -145499759 + L2 LINE L2 3002 3059 -254 564 142 16 8 chr11 3284770 3284897 -145498575 + GA-rich Low_complexity Low_complexity 1 128 0 335 353 33 7 chr11 3285056 3285206 -145498266 - MIR SINE MIR 0 262 109 255 287 110 55 chr11 3285524 3285688 -145497784 - MIR3 SINE MIR -16 192 20 1192 174 0 94 chr11 3285815 3286103 -145497369 + L1MA10 LINE L1 6074 6334 0 264 260 144 33 chr11 3286453 3286586 -145496886 + MIR SINE MIR 18 168 -94 2379 75 0 28 chr11 3286586 3286904 -145496568 - AluSc SINE Alu 0 309 1 264 260 144 33 chr11 3286904 3286934 -145496538 + MIR SINE MIR 168 193 -69 489 302 53 11 chr11 3287324 3287513 -145495959 + LTR16C LTR ERVL 291 487 -4 2435 37 37 3 chr11 3287570 3287866 -145495606 + AluY SINE Alu 1 306 -5 293 246 84 53 chr11 3287897 3288077 -145495395 - LTR65 LTR ERV1 -6 663 292 2064 103 0 4 chr11 3288199 3288471 -145495001 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr11 3288491 3288513 -145494959 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1720 203 28 52 chr11 3288687 3288727 -145494745 - MLT2D LTR ERVL 0 414 375 225 108 0 0 chr11 3288727 3288764 -145494708 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1720 203 28 52 chr11 3288764 3289147 -145494325 - MLT2D LTR ERVL -39 375 1 569 167 11 0 chr11 3289613 3289703 -145493769 - AluJ/FLAM SINE Alu -220 92 2 289 134 176 17 chr11 3289705 3289824 -145493648 - Charlie5 DNA MER1_type -49 2563 2426 3170 119 33 6 chr11 3289828 3290317 -145493155 - L1MB4 LINE L1 -1 6179 5678 2109 132 3 3 chr11 3290323 3290627 -145492845 - AluSx SINE Alu -8 304 1 217 278 69 0 chr11 3291399 3291471 -145492001 + L3 LINE CR1 1500 1576 -1 27 0 0 0 chr11 3291502 3291529 -145491943 + AT_rich Low_complexity Low_complexity 1 27 0 373 337 85 24 chr11 3291849 3292095 -145491377 + MIR SINE MIR 2 262 0 899 194 0 0 chr11 3292220 3292364 -145491108 - FRAM SINE Alu -27 149 6 2234 99 0 7 chr11 3292401 3292695 -145490777 + AluSc SINE Alu 1 292 -17 197 333 108 17 chr11 3294527 3294647 -145488825 - L2 LINE L2 -197 3075 2945 239 307 86 64 chr11 3296897 3297037 -145486435 - MIR SINE MIR -83 179 37 345 272 53 26 chr11 3297392 3297506 -145485966 - L2 LINE L2 0 3272 3156 205 269 87 91 chr11 3298937 3299179 -145484293 - L2 LINE L2 -1 3271 3031 2038 295 83 39 chr11 3299377 3300536 -145482936 - L2 LINE L2 -33 3280 2071 22 0 0 0 chr11 3301228 3301250 -145482222 + AT_rich Low_complexity Low_complexity 1 22 0 192 200 44 0 chr11 3301291 3301426 -145482046 + (TA)n Simple_repeat Simple_repeat 1 141 0 563 255 111 51 chr11 3301435 3301670 -145481802 + MIR SINE MIR 2 250 -12 271 344 8 16 chr11 3301861 3301983 -145481489 + MIR3 SINE MIR 87 207 -1 1160 136 35 0 chr11 3304384 3304583 -145478889 + L1MA6 LINE L1 6093 6298 -2 2478 65 0 3 chr11 3304771 3305078 -145478394 + AluY SINE Alu 1 306 -5 303 299 23 0 chr11 3305820 3305907 -145477565 + L1MC4 LINE L1 6615 6703 -1339 225 0 0 0 chr11 3305907 3305932 -145477540 + (CA)n Simple_repeat Simple_repeat 2 26 0 252 347 89 45 chr11 3306916 3307296 -145476176 + L2 LINE L2 1845 2241 -1073 207 240 0 20 chr11 3308219 3308269 -145475203 + MIR SINE MIR 42 90 -172 485 342 27 46 chr11 3308302 3308565 -145474907 - MIR SINE MIR -3 259 2 251 224 0 0 chr11 3308572 3308621 -145474851 + MIR SINE MIR 96 144 -118 193 282 0 64 chr11 3308843 3308921 -145474551 - L3b LINE CR1 -143 1440 1368 841 154 0 34 chr11 3309309 3309484 -145473988 - L1MB8 LINE L1 -3 6175 6007 636 335 33 5 chr11 3310256 3310471 -145473001 + L2 LINE L2 2451 2671 -643 1792 191 82 14 chr11 3310603 3311017 -145472455 + MLT1D LTR MaLR 1 442 -63 244 286 26 13 chr11 3311077 3311154 -145472318 - MIR SINE MIR -150 112 35 322 292 131 13 chr11 3312043 3312279 -145471193 + L1ME LINE L1 5561 5824 -297 964 200 117 38 chr11 3312511 3312857 -145470615 + MSTC LTR MaLR 1 428 0 271 411 6 13 chr11 3313167 3313325 -145470147 - L2 LINE L2 0 3272 3116 268 270 135 0 chr11 3313379 3313453 -145470019 + MER5A DNA MER1_type 26 109 -80 34 24 0 0 chr11 3313851 3313892 -145469580 + AT_rich Low_complexity Low_complexity 1 41 0 204 347 0 11 chr11 3313952 3314047 -145469425 - L2 LINE L2 -319 2953 2860 202 209 30 15 chr11 3314258 3314325 -145469147 + (TAA)n Simple_repeat Simple_repeat 2 69 0 308 291 163 20 chr11 3314339 3314535 -145468937 - MIR SINE MIR -2 260 37 252 366 27 9 chr11 3316636 3316748 -145466724 + MIR SINE MIR 22 135 -73 1724 100 58 4 chr11 3317039 3317279 -145466193 + AluSc SINE Alu 1 253 -56 180 0 0 0 chr11 3317304 3317324 -145466148 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1839 134 3 58 chr11 3317626 3317939 -145465533 + AluJb SINE Alu 17 312 0 2277 174 76 8 chr11 3317954 3318789 -145464683 - L1MB1 LINE L1 -13 6155 5226 191 380 28 28 chr11 3319212 3319354 -145464118 + L2 LINE L2 2031 2172 -1142 793 291 14 9 chr11 3420189 3420677 -145362795 - L1MC/D LINE L1 -769 5590 5101 33 25 0 0 chr11 3425572 3425612 -145357860 + AT_rich Low_complexity Low_complexity 1 40 0 265 106 21 21 chr11 3428503 3428550 -145354922 + AluSp SINE Alu 136 182 -121 241 284 34 0 chr11 3429177 3429265 -145354207 - L1MA5 LINE L1 -369 5931 5841 414 0 0 0 chr11 3429709 3429755 -145353717 + (GGA)n Simple_repeat Simple_repeat 3 48 0 312 27 0 0 chr11 3430902 3430939 -145352533 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 265 106 21 21 chr11 3431681 3431728 -145351744 - AluSp SINE Alu -121 182 136 275 265 8 45 chr11 3432799 3432931 -145350541 + HERVK LTR ERVK 2515 2641 -3275 23 0 0 0 chr11 3432947 3432970 -145350502 + AT_rich Low_complexity Low_complexity 1 23 0 348 265 10 13 chr11 3432992 3433153 -145350319 + HERVK LTR ERVK 2976 3747 -3496 22 35 0 0 chr11 3433442 3433471 -145350001 + AT_rich Low_complexity Low_complexity 1 29 0 4245 275 21 6 chr11 3433587 3435202 -145348270 + L1 LINE L1 2624 4262 -1884 222 37 0 0 chr11 3435607 3435634 -145347838 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 262 231 107 33 chr11 3436254 3436375 -145347097 + FRAM SINE Alu 37 166 0 380 83 33 0 chr11 3436552 3436612 -145346860 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 1363 320 14 15 chr11 3437768 3438958 -145344514 - L1MA5A LINE L1 -366 5931 4743 218 254 0 0 chr11 3439112 3439167 -145344305 + T-rich Low_complexity Low_complexity 4 58 0 6130 267 5 5 chr11 3439832 3442360 -145341112 - L1MA9 LINE L1 -381 5931 3402 204 40 0 0 chr11 3442604 3442629 -145340843 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 282 192 29 29 chr11 3442742 3442846 -145340626 - L1P LINE L1 -2347 3799 3696 524 293 45 28 chr11 3443874 3444345 -145339127 + L1 LINE L1 3108 3586 -2560 225 209 15 0 chr11 3444585 3444652 -145338820 - MLT2A1 LTR ERVL 0 444 377 1419 300 34 60 chr11 3445202 3446427 -145337045 + L1 LINE L1 3856 5048 -1098 342 153 0 0 chr11 3449571 3449630 -145333842 + (TA)n Simple_repeat Simple_repeat 2 60 0 240 221 0 26 chr11 3450786 3450863 -145332609 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 183 80 0 0 chr11 3451092 3451117 -145332355 + (T)n Simple_repeat Simple_repeat 1 25 0 201 39 0 0 chr11 3451946 3451972 -145331500 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 284 204 116 14 chr11 3452947 3453085 -145330387 + AluS SINE Alu 3 95 -208 429 176 65 131 chr11 3453176 3453329 -145330143 + FLAM_C SINE Alu 1 143 0 323 259 95 20 chr11 3458615 3458794 -145324678 + AluSq/x SINE Alu 2 113 -189 22 80 0 0 chr11 3460584 3460634 -145322838 + AT_rich Low_complexity Low_complexity 1 50 0 243 0 0 0 chr11 3461149 3461176 -145322296 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 195 42 0 0 chr11 3461187 3461211 -145322261 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 211 105 11 chr11 3461261 3461356 -145322116 - AluSq/x SINE Alu -197 105 2 21 0 0 0 chr11 3461699 3461720 -145321752 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 3461873 3461914 -145321558 + AT_rich Low_complexity Low_complexity 1 41 0 501 319 51 24 chr11 3462975 3463458 -145320014 - L1M4 LINE L1 -959 5187 4719 336 24 0 0 chr11 3463458 3463499 -145319973 + (TTG)n Simple_repeat Simple_repeat 2 42 0 501 319 51 24 chr11 3463499 3463521 -145319951 - L1M4 LINE L1 -1427 4719 4699 189 0 0 0 chr11 3463521 3463542 -145319930 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 501 319 51 24 chr11 3463542 3463655 -145319817 - L1M4 LINE L1 -1447 4699 4552 286 260 73 57 chr11 3463855 3464032 -145319440 + AluJo SINE Alu 123 302 0 36 23 0 0 chr11 3466069 3466112 -145317360 + AT_rich Low_complexity Low_complexity 1 43 0 679 320 16 16 chr11 3467091 3467531 -145315941 + L1 LINE L1 4882 5321 -825 190 333 0 0 chr11 3467554 3467614 -145315858 + MIR SINE MIR 6 65 -197 28 29 0 0 chr11 3467697 3467732 -145315740 + AT_rich Low_complexity Low_complexity 1 35 0 295 228 109 0 chr11 3467952 3468044 -145315428 + FLAM_C SINE Alu 5 106 -27 1155 114 0 0 chr11 3468083 3468258 -145315214 + (GAGAA)n Simple_repeat Simple_repeat 4 178 0 279 0 0 0 chr11 3468258 3468289 -145315183 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 599 175 8 0 chr11 3468289 3468409 -145315063 + GA-rich Low_complexity Low_complexity 1 121 0 343 216 98 0 chr11 3468793 3468895 -145314577 + FLAM_C SINE Alu 2 113 -20 23 0 0 0 chr11 3470490 3470513 -145312959 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr11 3470939 3470964 -145312508 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 239 120 0 40 chr11 3471779 3471829 -145311643 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 602 174 90 30 chr11 3473753 3473920 -145309552 - FRAM SINE Alu 0 176 1 23 33 0 0 chr11 3476936 3476966 -145306506 + AT_rich Low_complexity Low_complexity 1 30 0 1939 254 25 28 chr11 3477633 3478493 -145304979 - L1MA4 LINE L1 -375 5925 5066 2819 262 10 6 chr11 3478503 3479392 -145304080 + L1 LINE L1 3987 4879 -1267 823 308 42 35 chr11 3480144 3480924 -145302548 - L1M4 LINE L1 -960 5186 4395 405 0 0 0 chr11 3480924 3480969 -145302503 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 823 308 42 35 chr11 3480969 3481163 -145302309 - L1M4 LINE L1 -1751 4395 4204 333 0 0 0 chr11 3481263 3481300 -145302172 + (T)n Simple_repeat Simple_repeat 1 37 0 189 107 0 0 chr11 3481404 3481432 -145302040 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 188 317 0 0 chr11 3481525 3481585 -145301887 - MIR SINE MIR -197 65 6 643 221 14 27 chr11 3481638 3481843 -145301629 - L1MA7 LINE L1 -324 5976 5769 26 30 0 0 chr11 3481843 3481876 -145301596 + AT_rich Low_complexity Low_complexity 1 33 0 240 203 0 17 chr11 3481962 3482021 -145301451 - tRNA-Lys-AAA tRNA tRNA -13 63 6 203 59 0 29 chr11 3483056 3483090 -145300382 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 3483897 3483918 -145299554 + AT_rich Low_complexity Low_complexity 1 21 0 572 80 0 11 chr11 3485237 3485325 -145298147 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 482 178 121 45 chr11 3486595 3486752 -145296720 + FRAM SINE Alu 1 168 -8 225 0 0 0 chr11 3489324 3489349 -145294123 + (A)n Simple_repeat Simple_repeat 1 25 0 212 305 0 0 chr11 3489468 3489550 -145293922 + A-rich Low_complexity Low_complexity 1 82 0 270 116 0 0 chr11 3489665 3489708 -145293764 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 470 210 96 25 chr11 3492669 3492896 -145290576 + FRAM SINE Alu 2 239 0 600 53 0 0 chr11 3492896 3492972 -145290500 + (GGA)n Simple_repeat Simple_repeat 3 78 0 254 284 95 0 chr11 3493974 3494069 -145289403 + FLAM_C SINE Alu 3 106 -27 788 88 7 0 chr11 3494149 3494285 -145289187 + (CA)n Simple_repeat Simple_repeat 2 138 0 27 49 0 0 chr11 3495480 3495521 -145287951 + AT_rich Low_complexity Low_complexity 1 41 0 1125 226 4 0 chr11 3496107 3496373 -145287099 - L1MA7 LINE L1 -523 5657 5391 27 0 0 0 chr11 3496947 3496974 -145286498 + AT_rich Low_complexity Low_complexity 1 27 0 252 131 0 66 chr11 3497498 3497559 -145285913 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 416 184 125 53 chr11 3497710 3497862 -145285610 + FRAM SINE Alu 1 162 -14 296 231 0 0 chr11 3497945 3498010 -145285462 - tRNA-Ala-GCG tRNA tRNA -10 65 1 202 206 15 44 chr11 3498047 3498115 -145285357 + MIR3 SINE MIR 1 66 -142 243 224 0 0 chr11 3498359 3498435 -145285037 + CT-rich Low_complexity Low_complexity 2 77 0 207 0 0 0 chr11 3500277 3500300 -145283172 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 552 249 10 24 chr11 3501301 3501510 -145281962 + L1 LINE L1 2155 2360 -3786 431 216 111 58 chr11 3503403 3503574 -145279898 + AluJo SINE Alu 120 299 -13 215 214 0 0 chr11 3504789 3504831 -145278641 + GA-rich Low_complexity Low_complexity 3 44 0 769 277 49 33 chr11 3506631 3507130 -145276342 + HERVK14 LTR ERVK 2666 3648 -2860 323 239 0 23 chr11 3507323 3507411 -145276061 + HERVK14 LTR ERVK 3565 3650 -3767 21 0 0 0 chr11 3507722 3507743 -145275729 + AT_rich Low_complexity Low_complexity 1 21 0 250 296 15 15 chr11 3507857 3507989 -145275483 + HERVK14 LTR ERVK 4655 4786 -3330 239 311 0 0 chr11 3508388 3508462 -145275010 + L1 LINE L1 4072 4145 -2001 21 0 0 0 chr11 3509262 3509283 -145274189 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr11 3510762 3510794 -145272678 + (T)n Simple_repeat Simple_repeat 1 32 0 185 327 55 45 chr11 3512468 3512578 -145270894 - L2 LINE L2 -6 3266 3156 556 175 150 12 chr11 3514989 3515149 -145268323 - AluJo SINE Alu -10 302 121 225 154 0 0 chr11 3515667 3515706 -145267766 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 208 0 26 chr11 3517236 3517313 -145266159 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 560 129 10 0 chr11 3517975 3518076 -145265396 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2068 115 3 10 chr11 3518585 3518873 -145264599 - AluSx SINE Alu -26 286 1 33 25 0 0 chr11 3518986 3519026 -145264446 + AT_rich Low_complexity Low_complexity 1 40 0 194 309 0 29 chr11 3519052 3519120 -145264352 - MIR3 SINE MIR -142 66 1 639 39 0 0 chr11 3519484 3519562 -145263910 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 8935 274 12 11 chr11 3520975 3525545 -145257927 + L1MA9 LINE L1 1991 6647 -381 231 308 0 0 chr11 3527861 3527926 -145255546 + C-rich Low_complexity Low_complexity 4 68 0 946 274 22 37 chr11 3528078 3528483 -145254989 - L1PA8 LINE L1 -296 5876 5478 832 250 142 36 chr11 3528129 3528545 -145254927 - L1ME3 LINE L1 -337 5825 5366 * 428 127 60 217 chr11 3528779 3528965 -145254507 + FLAM_C SINE Alu 3 162 0 569 144 117 64 chr11 3531562 3531750 -145251722 + AluJo SINE Alu 115 312 0 24 32 0 0 chr11 3532812 3532843 -145250629 + AT_rich Low_complexity Low_complexity 1 31 0 500 139 146 49 chr11 3533556 3533700 -145249772 + FRAM SINE Alu 1 157 -19 23 33 0 0 chr11 3534239 3534269 -145249203 + AT_rich Low_complexity Low_complexity 1 30 0 1178 34 7 0 chr11 3536603 3536750 -145246722 + (GAAAA)n Simple_repeat Simple_repeat 2 149 0 297 0 0 0 chr11 3536889 3536922 -145246550 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 348 24 0 0 chr11 3537183 3537224 -145246248 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 276 30 0 0 chr11 3537240 3537273 -145246199 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 409 179 105 11 chr11 3537320 3537415 -145246057 - AluSq/x SINE Alu -207 105 2 405 310 36 70 chr11 3539768 3540184 -145243288 + L1M2 LINE L1 1818 2219 -4630 372 203 14 142 chr11 3540480 3540628 -145242844 + FLAM_C SINE Alu 2 130 -3 21 36 0 0 chr11 3540628 3540656 -145242816 + AT_rich Low_complexity Low_complexity 1 28 0 2139 281 14 10 chr11 3542961 3543996 -145239476 - L1MA4 LINE L1 -370 5930 4892 7413 280 11 13 chr11 3544254 3547726 -145235746 - L1MA4 LINE L1 -1241 4905 1432 450 153 127 60 chr11 3548645 3548823 -145234649 - AluJo SINE Alu 0 320 130 183 42 0 0 chr11 3548823 3548847 -145234625 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 513 242 81 6 chr11 3550123 3550284 -145233188 - FRAM SINE Alu -3 173 1 25 31 0 0 chr11 3554177 3554209 -145229263 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr11 3554370 3554392 -145229080 + (T)n Simple_repeat Simple_repeat 1 22 0 362 197 101 30 chr11 3554394 3554552 -145228920 - AluSq/x SINE Alu -197 105 2 449 181 85 0 chr11 3556058 3556152 -145227320 - AluSg SINE Alu -207 103 2 26 64 0 0 chr11 3556668 3556715 -145226757 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr11 3558219 3558255 -145225217 + AT_rich Low_complexity Low_complexity 1 36 0 316 194 65 93 chr11 3560600 3560739 -145222733 - AluSp SINE Alu -168 135 1 197 160 0 40 chr11 3564767 3564817 -145218655 + (TATG)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr11 3565275 3565303 -145218169 + AT_rich Low_complexity Low_complexity 1 28 0 388 298 8 0 chr11 3566638 3566769 -145216703 + HERVK22 LTR ERVK 3617 3748 -3495 230 274 0 0 chr11 3567055 3567117 -145216355 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 251 250 95 17 chr11 3567122 3567238 -145216234 + FRAM SINE Alu 42 166 0 2167 267 31 20 chr11 3567257 3568317 -145215155 + L1PA16 LINE L1 4861 5930 -236 428 210 115 25 chr11 3570044 3570231 -145213241 + AluJo SINE Alu 118 318 0 25 31 0 0 chr11 3570247 3570279 -145213193 + AT_rich Low_complexity Low_complexity 1 32 0 206 186 23 0 chr11 3570354 3570397 -145213075 + A-rich Low_complexity Low_complexity 6 49 0 657 0 0 0 chr11 3570622 3570695 -145212777 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 307 187 22 22 chr11 3571303 3571394 -145212078 + (TCTG)n Simple_repeat Simple_repeat 1 91 0 251 155 35 35 chr11 3571742 3571800 -145211672 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 250 244 13 64 chr11 3575397 3575475 -145207997 + HERVK22 LTR ERVK 3156 3229 -4887 1018 288 67 54 chr11 3575520 3576436 -145207036 + HERVK22 LTR ERVK 2483 3887 -2548 574 253 84 103 chr11 3577126 3578049 -145205423 + HERVK22 LTR ERVK 4261 4998 -947 207 0 0 0 chr11 3580741 3580764 -145202708 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 103 0 26 chr11 3580774 3580813 -145202659 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 425 204 114 60 chr11 3582452 3582619 -145200853 - FRAM SINE Alu -1 175 1 1281 260 64 23 chr11 3584237 3584672 -145198800 - HERVR LTR ERV1 -2180 5212 4760 521 273 139 85 chr11 3584864 3585781 -145197691 - HERVR LTR ERV1 -3326 5652 3252 259 316 0 0 chr11 3585784 3585863 -145197609 - HERVR LTR ERV1 -3796 3596 3518 269 231 22 55 chr11 3586027 3586118 -145197354 - HERVR LTR ERV1 -5870 1522 1435 437 311 0 0 chr11 3587170 3587347 -145196125 - HERVR LTR ERV1 -6787 605 429 277 123 25 19 chr11 3589017 3589090 -145194382 - MLT2A1 LTR ERVL 0 444 380 380 0 0 98 chr11 3589607 3589668 -145193804 + (T)n Simple_repeat Simple_repeat 1 55 0 770 112 0 8 chr11 3590010 3590135 -145193337 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 415 193 91 0 chr11 3590174 3590262 -145193210 - AluSg SINE Alu -213 97 2 26 0 0 0 chr11 3592734 3592760 -145190712 + AT_rich Low_complexity Low_complexity 1 26 0 186 217 50 50 chr11 3592843 3592903 -145190569 - MIR SINE MIR -197 65 6 249 292 81 19 chr11 3594269 3594430 -145189042 + Tigger1 DNA MER2_type 1960 2130 -288 22 0 0 0 chr11 3596080 3596102 -145187370 + AT_rich Low_complexity Low_complexity 1 22 0 861 120 0 0 chr11 3596116 3596249 -145187223 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1386 184 115 46 chr11 3696763 3697493 -145085979 - L1ME LINE L1 -552 5610 4837 24 53 0 0 chr11 3697543 3697581 -145085891 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 3697643 3697664 -145085808 + AT_rich Low_complexity Low_complexity 1 21 0 579 252 26 26 chr11 3698009 3698164 -145085308 - MIR SINE MIR -102 160 6 1081 153 0 0 chr11 3700852 3701028 -145082444 - L1MA2 LINE L1 -40 6264 6089 294 311 97 104 chr11 3701271 3701560 -145081912 + L2 LINE L2 2980 3266 -6 15740 154 36 5 chr11 3701742 3704043 -145079429 + L1MA1 LINE L1 609 3008 -4557 2133 116 0 0 chr11 3704043 3704327 -145079145 + AluSp SINE Alu 3 286 -27 15740 154 36 5 chr11 3704327 3704703 -145078769 + L1MA1 LINE L1 3008 3371 -4194 1776 159 184 11 chr11 3704703 3705068 -145078404 - MSTA LTR MaLR 0 428 1 6826 163 5 12 chr11 3705068 3706230 -145077242 - MSTA-int LTR MaLR 0 1580 427 7480 160 134 7 chr11 3706290 3709098 -145074374 + L1MA1 LINE L1 4534 7721 0 24 0 0 0 chr11 3709842 3709866 -145073606 + AT_rich Low_complexity Low_complexity 1 24 0 770 114 93 0 chr11 3709866 3710006 -145073466 - L1MA5A LINE L1 0 6297 6145 1631 113 4 4 chr11 3712236 3712501 -145070971 - L1MA4A LINE L1 -1 6302 6038 209 338 0 0 chr11 3712534 3712611 -145070861 + L2 LINE L2 2175 2251 -1063 21 0 0 0 chr11 3712861 3712882 -145070590 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr11 3713092 3713130 -145070342 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr11 3713282 3713320 -145070152 + AT_rich Low_complexity Low_complexity 1 38 0 1044 263 121 52 chr11 3713828 3714887 -145068585 + L1MEc LINE L1 1737 2859 -3356 3962 167 27 36 chr11 3714956 3715784 -145067688 + L1MA9 LINE L1 5491 6310 -2 1077 268 75 18 chr11 3715831 3716483 -145066989 + L1MEc LINE L1 3282 4034 -2181 * 38872 74 5 3 chr11 3716482 3721667 -145061805 + L1P LINE L1 6 5198 -948 224 383 14 46 chr11 3723572 3723789 -145059683 + L2 LINE L2 2733 2942 -372 296 359 0 10 chr11 3726782 3726885 -145056587 + L2 LINE L2 1121 1222 -2092 26 0 0 0 chr11 3726887 3726913 -145056559 + AT_rich Low_complexity Low_complexity 1 26 0 233 164 0 18 chr11 3727301 3727356 -145056116 + CT-rich Low_complexity Low_complexity 1 54 0 221 167 0 0 chr11 3727360 3727402 -145056070 + (TAG)n Simple_repeat Simple_repeat 2 43 0 378 304 65 42 chr11 3727994 3728162 -145055310 + L1M4b LINE L1 1238 1409 -5450 5187 133 5 10 chr11 3728170 3729114 -145054358 + L1PA11 LINE L1 4501 5435 -739 2239 120 7 0 chr11 3729114 3729415 -145054057 - AluSg SINE Alu -7 303 1 5187 133 5 10 chr11 3729415 3729970 -145053502 + L1PA11 LINE L1 5435 5992 -182 9511 56 0 4 chr11 3729970 3731961 -145051511 + L1PA5 LINE L1 4166 6154 0 339 289 57 54 chr11 3731961 3732311 -145051161 + L1M4b LINE L1 2518 2868 -4270 1045 334 93 35 chr11 3732336 3733100 -145050372 - L2 LINE L2 -806 2508 1701 558 269 27 32 chr11 3733742 3733928 -145049544 + MIR SINE MIR 78 262 0 22 0 0 0 chr11 3735284 3735306 -145048166 + AT_rich Low_complexity Low_complexity 1 22 0 562 236 55 18 chr11 3735435 3735600 -145047872 - MIR SINE MIR -14 248 78 218 203 31 31 chr11 3735655 3735719 -145047753 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 737 249 53 0 chr11 3735832 3736021 -145047451 + MER3 DNA MER1_type 9 207 -2 275 85 21 0 chr11 3736268 3736315 -145047157 + (TG)n Simple_repeat Simple_repeat 1 48 0 1662 230 38 38 chr11 3737059 3737563 -145045909 - MLT1D LTR MaLR -1 504 1 772 239 29 34 chr11 3739287 3739496 -145043976 + MER3 DNA MER1_type 1 208 -1 1185 221 46 57 chr11 3739611 3739978 -145043494 - L1ME1 LINE L1 -19 6147 5785 22 0 0 0 chr11 3740091 3740113 -145043359 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 3740147 3740168 -145043304 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 88 44 chr11 3740290 3740403 -145043069 + L2 LINE L2 3195 3312 -1 2041 128 0 0 chr11 3740680 3740962 -145042510 + AluSg SINE Alu 1 282 -28 447 245 128 41 chr11 3741251 3741447 -145042025 + MIR SINE MIR 49 261 -1 225 341 101 8 chr11 3743396 3743525 -145039947 + MIR SINE MIR 26 166 -96 21 0 0 0 chr11 3744761 3744782 -145038690 + AT_rich Low_complexity Low_complexity 1 21 0 339 260 91 67 chr11 3746432 3746640 -145036832 + MER46C DNA MER2_type 1 213 -125 1501 167 70 56 chr11 3747051 3747393 -145036079 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr11 3747991 3748012 -145035460 + AT_rich Low_complexity Low_complexity 1 21 0 438 361 17 22 chr11 3748056 3748286 -145035186 + MIR SINE MIR 12 240 -22 189 380 67 36 chr11 3749543 3749738 -145033734 - L2 LINE L2 -33 3239 3039 1535 181 78 6 chr11 3750968 3751288 -145032184 + MER2 DNA MER2_type 2 344 0 423 0 0 0 chr11 3752782 3752829 -145030643 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1983 198 70 5 chr11 3752941 3753341 -145030131 - MSTB LTR MaLR 0 426 1 31 68 0 0 chr11 3755112 3755171 -145028301 + AT_rich Low_complexity Low_complexity 1 59 0 318 311 228 14 chr11 3755514 3755733 -145027739 + L2 LINE L2 2872 3137 -176 678 158 7 82 chr11 3755938 3756084 -145027388 + FLAM_C SINE Alu 6 140 -3 332 257 178 0 chr11 3756321 3756422 -145027050 - MIR SINE MIR -40 222 104 21 0 0 0 chr11 3756519 3756540 -145026932 + AT_rich Low_complexity Low_complexity 1 21 0 1373 175 51 25 chr11 3757768 3758042 -145025430 + AluJo SINE Alu 1 281 -31 691 280 86 76 chr11 3758916 3759226 -145024246 - L1MEc LINE L1 -3586 2629 2323 291 28 0 0 chr11 3759226 3759262 -145024210 + (CA)n Simple_repeat Simple_repeat 2 37 0 2178 118 3 0 chr11 3759267 3759564 -145023908 - AluSc SINE Alu -11 298 1 691 280 86 76 chr11 3759564 3760547 -145022925 - L1MEc LINE L1 -3895 2320 1366 315 0 0 0 chr11 3760954 3760989 -145022483 + (TG)n Simple_repeat Simple_repeat 2 36 0 527 361 51 16 chr11 3761001 3761256 -145022216 - LTR16A LTR ERVL -84 366 103 327 338 20 35 chr11 3761700 3761898 -145021574 - ERVL LTR ERVL -609 5155 4961 37 0 0 0 chr11 3761898 3761935 -145021537 + AT_rich Low_complexity Low_complexity 1 37 0 520 405 57 17 chr11 3762341 3763202 -145020270 - ERVL LTR ERVL -1195 4459 3565 2357 73 0 7 chr11 3763262 3763562 -145019910 - AluY SINE Alu -13 298 1 369 304 22 44 chr11 3764010 3764191 -145019281 - ERVL LTR ERVL -2429 2567 2391 1258 142 28 5 chr11 3764447 3764659 -145018813 - L1PA16 LINE L1 -234 5932 5716 236 121 61 15 chr11 3764658 3764724 -145018748 - L1M LINE L1 -2455 5330 5262 * 33 56 0 0 chr11 3765012 3765066 -145018406 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr11 3765211 3765236 -145018236 + AT_rich Low_complexity Low_complexity 1 25 0 369 273 117 0 chr11 3766292 3766420 -145017052 - MIR SINE MIR -80 182 40 272 319 122 30 chr11 3766490 3766785 -145016687 + L2 LINE L2 1979 2300 -1014 189 415 12 0 chr11 3766918 3767000 -145016472 - L2 LINE L2 -3 3269 3187 36 40 0 0 chr11 3767737 3767787 -145015685 + AT_rich Low_complexity Low_complexity 1 50 0 245 211 141 0 chr11 3768593 3768664 -145014808 + MIR SINE MIR 124 204 -58 2211 103 3 19 chr11 3768911 3769221 -145014251 + AluSq SINE Alu 1 305 -8 229 303 0 13 chr11 3769247 3769323 -145014149 - L1ME LINE L1 -466 5655 5581 192 282 12 82 chr11 3770630 3770715 -145012757 - L2 LINE L2 -213 3059 2981 1626 272 22 20 chr11 3772085 3772589 -145010883 - MLT1D LTR MaLR 0 505 1 273 215 78 112 chr11 3772698 3772903 -145010569 + L2 LINE L2 3105 3302 -11 228 241 138 0 chr11 3773477 3773535 -145009937 + L2 LINE L2 3145 3210 -62 790 297 114 25 chr11 3773640 3774044 -145009428 + L2 LINE L2 2862 3301 -12 287 313 73 13 chr11 3774257 3774407 -145009065 - MIR SINE MIR -34 228 70 2466 183 122 7 chr11 3774733 3775301 -145008171 + LTR24C LTR ERV1 1 633 -2 226 298 37 106 chr11 3775848 3776036 -145007436 + L2 LINE L2 2898 3072 -200 781 291 65 58 chr11 3776205 3776634 -145006838 - MLT1G1 LTR MaLR -163 432 1 1022 86 50 0 chr11 3778141 3778280 -145005192 + AluY SINE Alu 1 146 -165 401 228 134 13 chr11 3778298 3778447 -145005025 + LTR33 LTR ERVL 205 371 -150 268 283 11 0 chr11 3778564 3778656 -145004816 + T-rich Low_complexity Low_complexity 4 96 0 352 298 50 16 chr11 3779157 3779278 -145004194 + L2 LINE L2 3148 3272 0 236 376 30 0 chr11 3779317 3779450 -145004022 - MIR SINE MIR -74 188 52 443 314 15 7 chr11 3780084 3780221 -145003251 - MIR SINE MIR -102 160 23 309 89 0 0 chr11 3783356 3783401 -145000071 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 23 33 0 0 chr11 3783792 3783822 -144999650 + AT_rich Low_complexity Low_complexity 1 30 0 1674 145 25 7 chr11 3783839 3784122 -144999350 - L1PB4 LINE L1 -7 6149 5862 490 347 44 28 chr11 3785414 3785662 -144997810 + MIR SINE MIR 5 256 -6 2314 84 7 0 chr11 3787482 3787780 -144995692 + AluSc SINE Alu 1 300 -9 231 328 138 45 chr11 3787805 3788202 -144995270 - L2 LINE L2 -1330 1984 1551 979 265 177 38 chr11 3790038 3790491 -144992981 + MLT1E LTR MaLR 1 516 -77 6717 132 2 1 chr11 3790548 3792395 -144991077 - L1PA10 LINE L1 -4 6164 4304 1334 135 0 34 chr11 3792444 3792681 -144990791 - MSTB1 LTR MaLR 0 432 204 207 100 0 0 chr11 3792681 3792711 -144990761 + (GA)n Simple_repeat Simple_repeat 2 31 0 4214 173 9 9 chr11 3792718 3793461 -144990011 - L1PB4 LINE L1 -4 6152 5407 1800 179 124 16 chr11 3793461 3793847 -144989625 + MSTA LTR MaLR 1 428 0 4214 173 9 9 chr11 3793847 3793862 -144989610 - L1PB4 LINE L1 -748 5408 5394 301 320 33 33 chr11 3793956 3794106 -144989366 + MIR SINE MIR 18 167 -95 184 400 0 0 chr11 3794187 3794267 -144989205 - MIR SINE MIR -135 127 48 1837 270 65 42 chr11 3794389 3795226 -144988246 - L1ME3A LINE L1 -9 6161 5306 1104 283 164 50 chr11 3795264 3796584 -144986888 - L1ME3A LINE L1 -1202 4944 3475 1322 302 65 20 chr11 3796763 3797451 -144986021 - L1ME3A LINE L1 -160 6010 5292 721 211 108 18 chr11 3797499 3797722 -144985750 + L1ME1 LINE L1 5502 5744 -422 310 271 0 0 chr11 3797743 3797850 -144985622 + (TA)n Simple_repeat Simple_repeat 1 107 0 1078 234 97 9 chr11 3797852 3798202 -144985270 + L1ME1 LINE L1 5781 6161 -5 25 31 0 0 chr11 3798232 3798264 -144985208 + AT_rich Low_complexity Low_complexity 1 32 0 943 284 105 20 chr11 3798267 3798301 -144985171 - MLT1G1 LTR MaLR -2 593 563 2114 126 24 48 chr11 3798301 3798674 -144984798 + THE1B LTR MaLR 1 364 0 11325 106 6 1 chr11 3798674 3800246 -144983226 + THE1B-int LTR MaLR 1 1580 0 2092 122 30 43 chr11 3800246 3800614 -144982858 + THE1B LTR MaLR 1 363 -1 943 284 105 20 chr11 3800614 3800919 -144982553 - MLT1G1 LTR MaLR -31 564 223 913 269 170 14 chr11 3800956 3801391 -144982081 + MLT1D LTR MaLR 3 505 0 487 184 0 0 chr11 3801417 3801515 -144981957 - L1MA6 LINE L1 0 6300 6203 285 189 0 0 chr11 3801520 3801573 -144981899 + L1MA6 LINE L1 6108 6160 -140 613 259 29 0 chr11 3801592 3801731 -144981741 - MLT1G1 LTR MaLR -451 144 2 348 265 122 0 chr11 3801745 3801843 -144981629 - MER81 DNA DNA 0 114 5 234 0 0 0 chr11 3803102 3803128 -144980344 + (T)n Simple_repeat Simple_repeat 1 26 0 190 358 119 50 chr11 3804417 3804635 -144978837 - MIR SINE MIR -10 252 20 2131 93 0 30 chr11 3805954 3806256 -144977216 + AluSg SINE Alu 10 302 -8 260 304 74 30 chr11 3806947 3807082 -144976390 - L2 LINE L2 -6 3307 3167 516 283 40 29 chr11 3807869 3808042 -144975430 + MIR SINE MIR 46 220 -42 414 57 0 0 chr11 3811966 3812019 -144971453 + (GA)n Simple_repeat Simple_repeat 2 54 0 196 356 77 66 chr11 3812326 3812691 -144970781 + L2 LINE L2 2889 3257 -15 277 282 70 49 chr11 3813203 3813345 -144970127 - L2 LINE L2 0 3313 3169 25 0 0 0 chr11 3813845 3813870 -144969602 + AT_rich Low_complexity Low_complexity 1 25 0 2198 153 52 41 chr11 3815299 3815718 -144967754 - MSTB LTR MaLR -2 424 1 7659 179 13 55 chr11 3815723 3817439 -144966033 - MSTB-int LTR MaLR -6 1645 1 2256 144 47 43 chr11 3817441 3817668 -144965804 - MSTB LTR MaLR -2 424 192 1907 119 7 7 chr11 3817668 3817988 -144965484 - AluSc SINE Alu 0 322 3 2256 144 47 43 chr11 3817988 3818181 -144965291 - MSTB LTR MaLR -234 192 1 245 313 25 0 chr11 3818414 3818494 -144964978 + L2 LINE L2 3224 3305 -8 31 88 0 0 chr11 3818747 3818827 -144964645 + AT_rich Low_complexity Low_complexity 1 80 0 1915 164 7 3 chr11 3820814 3820943 -144962529 + AluSx SINE Alu 1 128 -184 192 40 0 0 chr11 3820943 3820968 -144962504 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1915 164 7 3 chr11 3820968 3821137 -144962335 + AluSx SINE Alu 128 300 -12 21 0 0 0 chr11 3821429 3821450 -144962022 + AT_rich Low_complexity Low_complexity 1 21 0 721 274 18 18 chr11 3821475 3821698 -144961774 - MER58A DNA MER1_type -1 223 1 186 255 78 20 chr11 3821743 3821794 -144961678 + L2 LINE L2 3244 3297 -16 4188 54 0 0 chr11 3822257 3822814 -144960658 - L1P LINE L1 -3379 2767 2211 33 25 0 0 chr11 3823202 3823242 -144960230 + AT_rich Low_complexity Low_complexity 1 40 0 1624 66 0 0 chr11 3823278 3823491 -144959981 - L1PA6 LINE L1 -451 5703 5491 3516 57 0 2 chr11 3823491 3823918 -144959554 + L1PA6 LINE L1 5705 6141 -13 1760 202 0 3 chr11 3823954 3824256 -144959216 - AluJo SINE Alu -11 301 1 242 267 39 17 chr11 3824293 3824424 -144959048 - MIR SINE MIR -62 146 16 2082 140 6 17 chr11 3827350 3827699 -144955773 - L1PA15 LINE L1 -4 6161 5817 252 333 0 0 chr11 3828161 3828242 -144955230 - L2 LINE L2 -2035 1279 1199 300 106 0 45 chr11 3828370 3828436 -144955036 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 863 188 30 99 chr11 3828505 3829103 -144954369 - MER4C LTR ERV1 -10 455 5 248 162 0 59 chr11 3829116 3829184 -144954288 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 561 138 0 0 chr11 3829233 3829313 -144954159 - AluSq SINE Alu -91 222 143 775 130 7 43 chr11 3829519 3829677 -144953795 - FLAM_C SINE Alu 0 133 1 585 286 65 21 chr11 3829680 3830065 -144953407 + L1ME3 LINE L1 4850 5251 -895 525 297 0 47 chr11 3830080 3830336 -144953136 + L1ME3 LINE L1 5294 5537 -627 629 251 67 17 chr11 3830344 3830583 -144952889 + L1ME3 LINE L1 5583 5833 -329 4155 90 17 80 chr11 3830988 3831697 -144951775 - MER4A LTR ERV1 0 664 1 223 245 20 0 chr11 3831988 3832037 -144951435 + MER5A DNA MER1_type 57 106 -83 2232 202 47 2 chr11 3832121 3832650 -144950822 - L1 LINE L1 -3094 3052 2500 2124 78 0 25 chr11 3832846 3833127 -144950345 - AluY SINE Alu -3 308 35 34 0 0 0 chr11 3833218 3833252 -144950220 + AT_rich Low_complexity Low_complexity 1 34 0 315 327 31 38 chr11 3833275 3833434 -144950038 + HAL1b LINE L1 731 888 -460 1580 213 10 19 chr11 3833453 3833763 -144949709 + AluJb SINE Alu 1 307 -5 23 54 0 0 chr11 3833799 3833836 -144949636 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 3834974 3834995 -144948477 + AT_rich Low_complexity Low_complexity 1 21 0 196 349 63 68 chr11 3835022 3835659 -144947813 - L2 LINE L2 -688 2626 1993 1916 167 6 6 chr11 3835718 3836029 -144947443 - AluJb SINE Alu -1 311 1 397 344 84 26 chr11 3836318 3836545 -144946927 + MIR SINE MIR 22 261 -1 212 228 0 35 chr11 3836628 3836801 -144946671 + CT-rich Low_complexity Low_complexity 1 166 0 270 305 172 0 chr11 3836881 3837032 -144946440 + MIR SINE MIR 86 262 0 485 363 73 23 chr11 3839189 3839848 -144943624 - HERVL LTR ERVL -1467 4187 3496 319 363 31 44 chr11 3839905 3840359 -144943113 - HERVL LTR ERVL -3479 2175 1728 581 196 35 85 chr11 3842035 3842234 -144941238 - LTR41 LTR ERVL -7 766 578 533 220 66 70 chr11 3842671 3842930 -144940542 - LTR41 LTR ERVL -491 282 25 23 33 0 0 chr11 3843772 3843802 -144939670 + AT_rich Low_complexity Low_complexity 1 30 0 300 377 41 8 chr11 3844501 3844623 -144938849 + L2 LINE L2 3147 3272 0 330 286 70 60 chr11 3847574 3847773 -144935699 - MER58C DNA MER1_type -14 201 1 432 291 152 19 chr11 3849695 3849853 -144933619 + MER5A DNA MER1_type 10 188 -1 305 288 69 32 chr11 3850791 3850982 -144932490 + MIR3 SINE MIR 14 212 -50 21 71 0 0 chr11 3851047 3851089 -144932383 + AT_rich Low_complexity Low_complexity 1 42 0 215 158 26 0 chr11 3851315 3851353 -144932119 + CT-rich Low_complexity Low_complexity 2 40 0 357 24 0 0 chr11 3851354 3851396 -144932076 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 365 63 16 chr11 3851789 3851978 -144931494 + MIR3 SINE MIR 10 207 -1 24 32 0 0 chr11 3852126 3852157 -144931315 + AT_rich Low_complexity Low_complexity 1 31 0 266 187 66 11 chr11 3852532 3852623 -144930849 + (TA)n Simple_repeat Simple_repeat 1 96 0 2145 80 60 30 chr11 3852804 3853103 -144930369 - AluSx SINE Alu -4 308 1 21 0 0 0 chr11 3853272 3853293 -144930179 + AT_rich Low_complexity Low_complexity 1 21 0 446 139 13 0 chr11 3853591 3853670 -144929802 + MADE1 DNA Mariner 1 80 0 1204 246 14 14 chr11 3853672 3853957 -144929515 - AluJo SINE Alu -17 295 11 333 294 56 21 chr11 3853968 3854111 -144929361 + L1MC/D LINE L1 5297 5444 -740 21 82 0 0 chr11 3854119 3854168 -144929304 + AT_rich Low_complexity Low_complexity 1 49 0 43 56 0 0 chr11 3854351 3854422 -144929050 + AT_rich Low_complexity Low_complexity 1 71 0 2364 100 3 3 chr11 3854491 3854802 -144928670 + AluY SINE Alu 1 311 0 300 328 17 0 chr11 3854954 3855073 -144928399 + L1MC/D LINE L1 5684 5804 -2004 1511 234 37 85 chr11 3855181 3855778 -144927694 + L1M1 LINE L1 8 575 -6990 3904 77 12 2 chr11 3855927 3856514 -144926958 - L1P LINE L1 -2286 3860 3268 218 200 0 0 chr11 3858509 3858554 -144924918 + A-rich Low_complexity Low_complexity 2 46 0 267 375 86 36 chr11 3858874 3859178 -144924294 - L3 LINE CR1 -5 1572 1254 255 341 72 7 chr11 3859183 3859321 -144924151 + L2 LINE L2 3158 3304 -9 31 0 0 0 chr11 3860117 3860148 -144923324 + AT_rich Low_complexity Low_complexity 1 31 0 256 274 48 25 chr11 3860999 3861202 -144922270 - L1M LINE L1 -766 5380 5188 417 267 185 20 chr11 3861543 3861689 -144921783 - MER5A DNA MER1_type -2 187 18 2338 89 0 22 chr11 3861863 3862178 -144921294 + AluSc SINE Alu 2 309 0 194 91 30 0 chr11 3862352 3862385 -144921087 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 304 337 56 59 chr11 3862429 3862735 -144920737 - L1M4 LINE L1 -1973 4173 3869 984 201 23 27 chr11 3863563 3863782 -144919690 - MER20 DNA MER1_type -1 218 1 287 281 61 35 chr11 3864346 3864460 -144919012 + MIR SINE MIR 33 149 -113 213 287 60 60 chr11 3865006 3865222 -144918250 - L2 LINE L2 0 3313 3098 417 198 0 23 chr11 3865680 3865766 -144917706 + L1PA16 LINE L1 5978 6061 -105 21 0 0 0 chr11 3868407 3868428 -144915044 + AT_rich Low_complexity Low_complexity 1 21 0 240 371 29 0 chr11 3868435 3868540 -144914932 - MIR SINE MIR -108 154 47 239 176 139 46 chr11 3868922 3869030 -144914442 + LTR38B LTR ERV1 1 118 -492 1826 111 19 8 chr11 3869143 3869404 -144914068 - AluSx SINE Alu -9 303 40 300 292 40 86 chr11 3869544 3869865 -144913607 + LTR38 LTR ERV1 291 556 0 317 89 40 40 chr11 3869986 3870087 -144913385 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2600 46 0 0 chr11 3870420 3870725 -144912747 + AluY SINE Alu 1 305 -6 6756 165 29 26 chr11 3872066 3873310 -144910162 - Ricksha_b DNA DNA -7 1247 1 210 71 95 0 chr11 3873486 3873528 -144909944 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3862 83 2 0 chr11 3874533 3875065 -144908407 + L1P LINE L1 4329 4861 -1285 269 192 0 0 chr11 3875084 3875136 -144908336 + LTR49-int LTR ERV1 4994 5045 -1286 3524 123 18 5 chr11 3875136 3875957 -144907515 - L1PA11 LINE L1 -579 5595 4769 4105 118 2 5 chr11 3875957 3876552 -144906920 + L1PA11 LINE L1 5565 6163 -11 938 285 30 65 chr11 3876559 3877053 -144906419 + LTR49-int LTR ERV1 3764 4240 -696 1338 218 38 50 chr11 3877066 3877484 -144905988 + LTR37A LTR ERV1 4 416 -10 1401 214 13 105 chr11 3877552 3878076 -144905396 - MER31A LTR ERV1 -9 476 1 1350 210 68 87 chr11 3878199 3878670 -144904802 - MER31A-int LTR ERV1 -100 4836 4375 3270 205 53 13 chr11 3878746 3879540 -144903932 - MER31A-int LTR ERV1 -727 4209 3384 1296 226 57 17 chr11 3879541 3879943 -144903529 - MER31A-int LTR ERV1 -1763 3173 2756 3071 214 56 77 chr11 3880041 3882010 -144901462 - MER31A-int LTR ERV1 -2372 2564 654 337 313 57 60 chr11 3882013 3882348 -144901124 - L1M2b LINE L1 -5414 1795 1462 653 321 5 5 chr11 3882402 3882598 -144900874 - MER31A-int LTR ERV1 -4524 412 217 412 170 85 32 chr11 3882605 3882699 -144900773 - MER31A-int LTR ERV1 -4670 266 168 604 209 102 53 chr11 3882887 3883107 -144900365 - MER31A LTR ERV1 -2 483 253 1940 180 43 38 chr11 3883107 3883529 -144899943 - MSTB1 LTR MaLR 0 432 9 682 237 73 78 chr11 3883535 3883780 -144899692 - MER31B LTR ERV1 -222 244 1 22 0 0 0 chr11 3883894 3883916 -144899556 + AT_rich Low_complexity Low_complexity 1 22 0 2946 66 5 0 chr11 3886206 3886586 -144896886 + L1PA10 LINE L1 5776 6157 -11 884 339 37 15 chr11 3888635 3889036 -144894436 - LTR16A LTR ERVL 0 450 41 1875 164 24 34 chr11 3889357 3889736 -144893736 + THE1C LTR MaLR 1 375 0 847 324 39 6 chr11 3890260 3890596 -144892876 + HERV16 LTR ERVL 736 1082 -3914 326 314 80 5 chr11 3890597 3890785 -144892687 + HERV16 LTR ERVL 1602 1803 -3193 395 330 38 28 chr11 3890830 3891442 -144892030 + HERV16 LTR ERVL 1906 2677 -2319 23 54 0 0 chr11 3891961 3891998 -144891474 + AT_rich Low_complexity Low_complexity 1 37 0 411 287 8 59 chr11 3892451 3892688 -144890784 + HAL1 LINE L1 2277 2501 -6 4770 149 107 70 chr11 3892723 3893907 -144889565 - Tigger3b DNA MER2_type -2 1229 2 236 316 13 13 chr11 3893948 3894027 -144889445 + MIR SINE MIR 63 141 -121 24 0 0 0 chr11 3894371 3894395 -144889077 + AT_rich Low_complexity Low_complexity 1 24 0 604 219 50 60 chr11 3894481 3894682 -144888790 - MIR SINE MIR -1 261 63 249 330 29 0 chr11 3896457 3896560 -144886912 - MIR SINE MIR -10 252 147 216 0 0 0 chr11 3896951 3896975 -144886497 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 193 60 133 chr11 3897965 3898048 -144885424 + L2 LINE L2 3237 3313 0 263 247 123 25 chr11 3898555 3898636 -144884836 - MIR SINE MIR -92 116 28 262 254 41 75 chr11 3899186 3899325 -144884147 + MIR SINE MIR 9 151 -57 23 0 0 0 chr11 3899792 3899815 -144883657 + AT_rich Low_complexity Low_complexity 1 23 0 335 0 0 41 chr11 3900321 3900370 -144883102 - L1PA3 LINE L1 0 6155 6109 251 379 110 9 chr11 3901407 3901734 -144881738 + LTR16A LTR ERVL 1 360 -90 24 0 0 0 chr11 3901999 3902023 -144881449 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 3902075 3902103 -144881369 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr11 3902679 3902735 -144880737 + AT_rich Low_complexity Low_complexity 1 56 0 183 245 122 61 chr11 3903085 3903183 -144880289 - L3 LINE CR1 -1390 187 84 564 278 192 30 chr11 3903412 3903887 -144879585 + MLT1G LTR MaLR 22 573 -17 239 333 70 0 chr11 3904413 3904527 -144878945 - L2 LINE L2 0 3313 3192 279 53 70 0 chr11 3904670 3904727 -144878745 + T-rich Low_complexity Low_complexity 2 62 0 18886 29 0 0 chr11 3904730 3907753 -144875719 - L1PA2 LINE L1 -2 6153 3131 460 125 11 11 chr11 3908728 3908816 -144874656 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 197 128 0 26 chr11 3908920 3908959 -144874513 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr11 3910242 3910265 -144873207 + AT_rich Low_complexity Low_complexity 1 23 0 489 255 163 0 chr11 3910353 3910506 -144872966 + MER5A DNA MER1_type 12 189 0 276 224 250 0 chr11 3910869 3910985 -144872487 + MIR SINE MIR 117 261 -1 271 180 0 0 chr11 3911268 3911329 -144872143 - L1MA8 LINE L1 -4 6287 6227 22 0 0 0 chr11 3914469 3914491 -144868981 + AT_rich Low_complexity Low_complexity 1 22 0 423 83 0 0 chr11 3916830 3916890 -144866582 + (TG)n Simple_repeat Simple_repeat 1 60 0 1284 226 51 0 chr11 3918454 3918729 -144864743 + AluJo SINE Alu 10 298 -14 381 122 0 37 chr11 3918729 3918811 -144864661 + (GGA)n Simple_repeat Simple_repeat 1 79 0 25 31 0 0 chr11 3919004 3919036 -144864436 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 3919141 3919164 -144864308 + AT_rich Low_complexity Low_complexity 1 23 0 1381 170 49 61 chr11 3919249 3919578 -144863894 - MER44D DNA MER2_type 0 609 15 21 36 0 0 chr11 3919691 3919719 -144863753 + AT_rich Low_complexity Low_complexity 1 28 0 566 290 82 34 chr11 3919800 3920412 -144863060 + L1M4 LINE L1 4408 5047 -1099 * 3354 181 40 14 chr11 3920406 3921101 -144862371 + L1MA7 LINE L1 5491 6203 -88 409 141 76 0 chr11 3921204 3921296 -144862176 + L1MA7 LINE L1 6186 6284 -7 280 295 147 8 chr11 3921321 3921450 -144862022 - MIR SINE MIR -31 231 85 546 260 39 0 chr11 3921626 3921780 -144861692 + L1MCb LINE L1 570 729 -5316 1508 164 75 4 chr11 3921799 3922079 -144861393 - MER7A DNA MER2_type -1 345 48 1712 99 0 0 chr11 3922092 3922325 -144861147 - L1PA10 LINE L1 -168 6000 5768 1309 163 9 70 chr11 3922425 3922769 -144860703 + Ricksha DNA DNA 2922 3244 -7 2606 49 0 0 chr11 3924110 3924418 -144859054 - AluY SINE Alu -3 308 1 317 89 40 40 chr11 3924751 3924852 -144858620 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 300 292 40 86 chr11 3924973 3925294 -144858178 - LTR38 LTR ERV1 0 564 291 1826 111 19 8 chr11 3925432 3925693 -144857779 + AluSx SINE Alu 40 303 -9 239 176 139 46 chr11 3925806 3925914 -144857558 - LTR38B LTR ERV1 -492 118 1 240 371 29 0 chr11 3926296 3926401 -144857071 + MIR SINE MIR 47 154 -108 21 0 0 0 chr11 3926408 3926429 -144857043 + AT_rich Low_complexity Low_complexity 1 21 0 362 205 0 12 chr11 3929073 3929156 -144854316 - L1PA16 LINE L1 -105 6061 5980 2166 110 0 7 chr11 3929311 3929603 -144853869 - AluSx SINE Alu -22 290 1 232 385 111 26 chr11 3929627 3930095 -144853377 + L2 LINE L2 2804 3311 -2 299 259 132 63 chr11 3930562 3930751 -144852721 - MIR SINE MIR -28 234 33 21 36 0 0 chr11 3931165 3931193 -144852279 + AT_rich Low_complexity Low_complexity 1 28 0 1020 194 17 0 chr11 3931806 3931986 -144851486 - AluJb SINE Alu -1 311 129 2433 86 0 6 chr11 3931988 3932302 -144851170 - AluSx SINE Alu 0 312 1 648 70 0 0 chr11 3932372 3932458 -144851014 + (TC)n Simple_repeat Simple_repeat 2 87 0 294 29 0 0 chr11 3932459 3932494 -144850978 - AluSp/q SINE Alu -21 282 248 1094 121 6 6 chr11 3932494 3932651 -144850821 - AluSx SINE Alu -155 157 1 204 182 0 0 chr11 3932697 3932741 -144850731 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2562 45 3 0 chr11 3932877 3933186 -144850286 - AluY SINE Alu -1 310 1 724 146 48 24 chr11 3933855 3934020 -144849452 + ORSL DNA AcHobo 91 259 -16 23 0 0 0 chr11 3935746 3935769 -144847703 + AT_rich Low_complexity Low_complexity 1 23 0 400 279 79 57 chr11 3938293 3938558 -144844914 + L1M4 LINE L1 3198 3468 -2678 1331 297 66 30 chr11 3938716 3939773 -144843699 + L1M4 LINE L1 3588 4682 -1464 559 203 63 13 chr11 3941365 3941523 -144841949 + L1MA9 LINE L1 5939 6104 -208 341 161 0 0 chr11 3941651 3941707 -144841765 + L1MA9 LINE L1 6104 6159 -153 228 111 0 0 chr11 3941763 3941799 -144841673 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 186 209 0 0 chr11 3942125 3942168 -144841304 + T-rich Low_complexity Low_complexity 1 43 0 485 71 14 0 chr11 3942171 3942241 -144841231 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 224 130 22 0 chr11 3942244 3942290 -144841182 + CT-rich Low_complexity Low_complexity 2 48 0 456 77 0 0 chr11 3943658 3943723 -144839749 + (CA)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr11 3943907 3943944 -144839528 + AT_rich Low_complexity Low_complexity 1 37 0 333 279 90 23 chr11 3945865 3946115 -144837357 - LTR36 LTR ERV1 0 611 345 2113 131 0 0 chr11 3946199 3946504 -144836968 - AluSx SINE Alu -7 305 1 242 188 14 14 chr11 3946578 3946647 -144836825 - LTR36 LTR ERV1 -472 139 71 728 283 61 5 chr11 3947403 3947601 -144835871 - MER63A DNA MER1_type -1 209 1 1017 301 71 31 chr11 3947747 3948169 -144835303 + LTR16A LTR ERVL 1 439 -11 2354 201 126 24 chr11 3948248 3948906 -144834566 - MER50 LTR ERV1 0 734 10 310 204 121 25 chr11 3949083 3949240 -144834232 - L1M4 LINE L1 -897 5137 4966 316 172 60 48 chr11 3949243 3949370 -144834102 - LTR41 LTR ERVL -2 793 650 522 258 26 13 chr11 3949895 3950050 -144833422 - LTR41 LTR ERVL -616 157 1 2009 140 66 3 chr11 3950285 3950649 -144832823 + LTR34 LTR ERV1 313 699 0 336 223 39 31 chr11 3950718 3950848 -144832624 - L1M4 LINE L1 -1302 4732 4602 2171 137 5 39 chr11 3950896 3951284 -144832188 + THE1C LTR MaLR 1 375 0 2274 124 3 17 chr11 3951309 3951655 -144831817 + THE1C-int LTR MaLR 1240 1580 0 1745 162 90 9 chr11 3951657 3952002 -144831470 + THE1C LTR MaLR 3 375 0 330 303 60 0 chr11 3952096 3952281 -144831191 - L1M4 LINE L1 -1594 4440 4245 4023 137 32 33 chr11 3952548 3953276 -144830196 - LTR8A LTR ERV1 0 727 1 186 71 0 0 chr11 3953494 3953522 -144829950 + (CA)n Simple_repeat Simple_repeat 1 28 0 509 332 26 5 chr11 3954214 3954407 -144829065 - MIR SINE MIR -46 216 20 2419 84 0 3 chr11 3954412 3954723 -144828749 - AluSg SINE Alu 0 310 1 796 246 47 9 chr11 3954844 3955055 -144828417 - MER20 DNA MER1_type 0 219 1 218 336 199 0 chr11 3957501 3957647 -144825825 - MIR SINE MIR -21 241 67 235 370 71 28 chr11 3958627 3958838 -144824634 + L2 LINE L2 2460 2679 -635 225 345 48 12 chr11 3959141 3959225 -144824247 + L2 LINE L2 2998 3084 -188 763 165 0 0 chr11 3959392 3959507 -144823965 + FLAM_A SINE Alu 9 123 -19 1829 144 0 0 chr11 3959511 3959795 -144823677 + AluSc SINE Alu 22 305 0 262 356 20 45 chr11 3961834 3962036 -144821436 + L2 LINE L2 1767 1963 -1351 2904 201 86 24 chr11 3962044 3962834 -144820638 - L1MC3 LINE L1 0 7785 6947 2209 235 95 74 chr11 3962845 3963753 -144819719 - L1MEc LINE L1 -2646 3736 2789 1536 181 3 45 chr11 3963753 3964077 -144819395 + AluJo SINE Alu 3 314 0 2209 235 95 74 chr11 3964077 3964434 -144819038 - L1MEc LINE L1 -3593 2789 2441 4021 206 40 6 chr11 3964670 3964733 -144818739 - L1MA9 LINE L1 -75 6237 6178 230 0 33 0 chr11 3964733 3964763 -144818709 + (TG)n Simple_repeat Simple_repeat 2 32 0 4021 206 40 6 chr11 3964763 3965568 -144817904 - L1MA9 LINE L1 -134 6178 5339 2772 296 22 10 chr11 3965561 3967455 -144816017 - L1M4 LINE L1 -4401 1634 12 * 323 253 90 24 chr11 3967478 3967773 -144815699 - L1MEc LINE L1 -3953 2471 2110 5052 164 35 9 chr11 3967776 3968719 -144814753 - Tigger1 DNA MER2_type -6 2412 1446 8614 244 24 27 chr11 3968719 3974380 -144809092 + L1PA12 LINE L1 1 5113 -2471 2008 148 0 0 chr11 3974380 3974670 -144808802 + AluSx SINE Alu 1 290 -22 566 299 87 71 chr11 3974830 3975083 -144808389 - L1M4 LINE L1 -1505 4641 4394 3160 143 12 0 chr11 3975083 3975594 -144807878 - L1PA15 LINE L1 -4 6161 5645 3060 178 18 5 chr11 3975594 3976167 -144807305 + LTR22 LTR ERVK 1 580 0 566 299 87 71 chr11 3976167 3976616 -144806856 - L1M4 LINE L1 -1752 4394 3911 1429 113 102 4 chr11 3976616 3976891 -144806581 + L1MA3 LINE L1 6003 6304 -1 566 299 87 71 chr11 3976891 3977277 -144806195 - L1M4 LINE L1 -2235 3911 3533 235 296 45 34 chr11 3978110 3978198 -144805274 + MER5B DNA MER1_type 8 96 -82 1029 275 53 6 chr11 3978210 3978552 -144804920 - L1ME LINE L1 -391 5771 5414 1643 180 42 19 chr11 3978663 3979024 -144804448 - L1MA7 LINE L1 -129 6162 5794 341 316 137 0 chr11 3979113 3979325 -144804147 - L1ME LINE L1 -1058 5088 4848 256 281 0 47 chr11 3979326 3979390 -144804082 - MER5B DNA MER1_type -110 68 8 324 260 91 25 chr11 3979523 3979808 -144803664 - L1ME LINE L1 -2872 3274 2971 261 185 46 62 chr11 3980180 3980245 -144803227 - L2 LINE L2 0 3313 3250 252 309 52 16 chr11 3980904 3981030 -144802442 + MIR SINE MIR 45 176 -62 411 198 0 23 chr11 3983664 3983750 -144799722 - L1PA16 LINE L1 -105 6061 5978 199 319 85 32 chr11 3984330 3984424 -144799048 + L2 LINE L2 3174 3272 0 276 278 52 35 chr11 3984970 3985085 -144798387 - MIR SINE MIR -113 149 33 967 206 23 27 chr11 3985649 3985868 -144797604 + MER20 DNA MER1_type 1 218 -1 310 337 56 59 chr11 3986696 3987002 -144796470 + L1MB1 LINE L1 3869 4173 -1973 22 0 0 0 chr11 3987044 3987066 -144796406 + AT_rich Low_complexity Low_complexity 1 22 0 2223 95 0 23 chr11 3987242 3987548 -144795924 - AluSc SINE Alu -9 300 2 426 267 185 20 chr11 3987716 3987862 -144795610 + MER5A DNA MER1_type 18 187 -2 250 284 58 23 chr11 3988203 3988400 -144795072 + L1MB1 LINE L1 5188 5384 -747 31 0 0 0 chr11 3989257 3989288 -144794184 + AT_rich Low_complexity Low_complexity 1 31 0 264 364 40 7 chr11 3990084 3990235 -144793237 - L2 LINE L2 -9 3304 3149 * 284 359 92 43 chr11 3990227 3990531 -144792941 + L3 LINE CR1 1254 1572 -5 218 200 0 0 chr11 3990851 3990896 -144792576 + T-rich Low_complexity Low_complexity 2 46 0 1415 206 120 5 chr11 3992987 3993355 -144790117 + L1MB1 LINE L1 5768 6177 -12 27 0 0 0 chr11 3993364 3993391 -144790081 + AT_rich Low_complexity Low_complexity 1 27 0 416 202 0 12 chr11 3993395 3993479 -144789993 - MLT1C LTR MaLR -384 83 1 411 335 45 15 chr11 3993489 3993689 -144789783 + HAL1 LINE L1 1599 1804 -703 32 95 0 0 chr11 3994530 3994625 -144788847 + AT_rich Low_complexity Low_complexity 1 95 0 565 343 44 0 chr11 3994632 3994836 -144788636 - MIR SINE MIR -17 245 33 21 36 0 0 chr11 3995684 3995712 -144787760 + AT_rich Low_complexity Low_complexity 1 28 0 267 189 0 0 chr11 3998715 3998768 -144784704 + CT-rich Low_complexity Low_complexity 4 56 0 423 273 66 0 chr11 4000034 4000155 -144783317 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr11 4000283 4000305 -144783167 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr11 4000383 4000426 -144783046 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 21 95 0 0 chr11 4000604 4000667 -144782805 + AT_rich Low_complexity Low_complexity 1 63 0 414 335 52 47 chr11 4000788 4001272 -144782200 - L1MEd LINE L1 -856 1634 1050 9838 155 42 16 chr11 4001338 4002277 -144781195 + Tigger1 DNA MER2_type 304 1217 -1201 1990 95 23 36 chr11 4002277 4002582 -144780890 - AluSc SINE Alu -8 301 1 9838 155 42 16 chr11 4002582 4003549 -144779923 + Tigger1 DNA MER2_type 1217 2323 -95 2017 170 100 0 chr11 4003549 4003938 -144779534 - MSTC LTR MaLR 0 428 1 9838 155 42 16 chr11 4003938 4004037 -144779435 + Tigger1 DNA MER2_type 2323 2418 0 462 332 14 36 chr11 4004488 4004711 -144778761 - MIR SINE MIR -34 228 11 21 0 0 0 chr11 4005027 4005048 -144778424 + AT_rich Low_complexity Low_complexity 1 21 0 180 200 0 0 chr11 4005639 4005684 -144777788 + CT-rich Low_complexity Low_complexity 2 46 0 24 0 0 0 chr11 4005709 4005733 -144777739 + AT_rich Low_complexity Low_complexity 1 24 0 266 164 0 16 chr11 4008243 4008304 -144775168 + CT-rich Low_complexity Low_complexity 3 62 0 22 80 0 0 chr11 4009232 4009282 -144774190 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr11 4009739 4009782 -144773690 + AT_rich Low_complexity Low_complexity 1 43 0 2539 182 11 17 chr11 4009783 4010304 -144773168 - L1PA16 LINE L1 -4 6162 5645 656 97 0 19 chr11 4010701 4010804 -144772668 + L1MA2 LINE L1 6197 6297 -7 22 0 0 0 chr11 4010824 4010846 -144772626 + AT_rich Low_complexity Low_complexity 1 22 0 356 322 24 10 chr11 4010874 4011079 -144772393 + L1MD1 LINE L1 4657 4864 -1282 1708 252 56 12 chr11 4011575 4012091 -144771381 - L1MB8 LINE L1 -42 6136 5598 * 2718 204 105 24 chr11 4012086 4012827 -144770645 + L1MD1 LINE L1 5404 6204 -38 23 0 0 0 chr11 4012844 4012867 -144770605 + AT_rich Low_complexity Low_complexity 1 23 0 504 284 36 13 chr11 4012886 4013111 -144770361 - L1MEc LINE L1 -3457 2758 2529 776 302 101 21 chr11 4013132 4013645 -144769827 - L1MEc LINE L1 -3918 2478 1925 261 276 0 0 chr11 4013711 4013769 -144769703 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2908 147 8 25 chr11 4013774 4014283 -144769189 + Tigger3(Golem) DNA MER2_type 2529 3028 -1 389 264 31 109 chr11 4014366 4014559 -144768913 + MER58A DNA MER1_type 27 204 -20 610 125 62 0 chr11 4014787 4014883 -144768589 - AluSq/x SINE Alu -206 107 6 2245 75 0 0 chr11 4014897 4015209 -144768263 - AluY SINE Alu 0 312 1 459 289 30 6 chr11 4015235 4015401 -144768071 - L1M4 LINE L1 -1795 5770 5601 4461 54 0 14 chr11 4015408 4015986 -144767486 - L1PA8 LINE L1 -5 6167 5598 1245 72 0 0 chr11 4015986 4016153 -144767319 + L1PA8 LINE L1 5416 5582 -590 714 268 44 12 chr11 4016158 4016408 -144767064 - L1M4 LINE L1 -1988 5577 5320 26 50 0 0 chr11 4016463 4016503 -144766969 + AT_rich Low_complexity Low_complexity 1 40 0 1155 226 7 14 chr11 4018514 4018801 -144764671 - L1MC3 LINE L1 0 7785 7501 1383 131 5 5 chr11 4019154 4019360 -144764112 + AluSg/x SINE Alu 95 300 -12 1890 154 0 3 chr11 4021651 4021943 -144761529 - AluSx SINE Alu -19 293 3 1047 224 94 31 chr11 4022948 4023328 -144760144 - L1MCc LINE L1 -4157 3409 2785 364 20 0 0 chr11 4023465 4023514 -144759958 + L1PA15 LINE L1 6110 6158 -7 252 265 105 50 chr11 4023670 4023851 -144759621 + L2 LINE L2 1813 2003 -1311 325 298 0 8 chr11 4023854 4023975 -144759497 + (TA)n Simple_repeat Simple_repeat 1 120 0 257 275 0 0 chr11 4023982 4024062 -144759410 + L1MC4 LINE L1 6624 6703 -1339 259 51 26 0 chr11 4024309 4024348 -144759124 + L1PA13 LINE L1 6111 6150 -13 324 209 26 26 chr11 4024354 4024469 -144759003 + (TA)n Simple_repeat Simple_repeat 2 116 0 447 356 108 53 chr11 4024473 4025184 -144758288 + L2 LINE L2 2031 2780 -534 21 57 0 0 chr11 4026586 4026621 -144756851 + AT_rich Low_complexity Low_complexity 1 35 0 674 262 69 57 chr11 4027182 4027453 -144756019 + MLT1D LTR MaLR 88 354 -151 36 23 0 0 chr11 4027795 4027838 -144755634 + AT_rich Low_complexity Low_complexity 1 43 0 186 428 11 0 chr11 4028935 4029034 -144754438 - MIR SINE MIR -61 147 50 339 25 0 0 chr11 4029386 4029426 -144754046 + (CA)n Simple_repeat Simple_repeat 2 41 0 315 258 0 43 chr11 4032833 4032926 -144750546 - L1MCc LINE L1 -5517 1530 1442 532 305 147 31 chr11 4033017 4033466 -144750006 - L1MCc LINE L1 -5850 1197 697 215 317 143 19 chr11 4033618 4033779 -144749693 + MER5A DNA MER1_type 4 184 -5 195 100 0 0 chr11 4033920 4033950 -144749522 + (CA)n Simple_repeat Simple_repeat 2 31 0 665 333 24 4 chr11 4034038 4034290 -144749182 + MIR SINE MIR 5 261 -1 213 289 0 0 chr11 4035292 4035337 -144748135 - MER5B DNA MER1_type -8 170 126 322 235 43 43 chr11 4035353 4035468 -144748004 - L1ME1 LINE L1 -210 5956 5842 366 307 51 31 chr11 4035480 4035869 -144747603 + L1MEc LINE L1 1580 1880 -4502 329 107 0 18 chr11 4035892 4035948 -144747524 + (TTC)n Simple_repeat Simple_repeat 2 56 0 345 282 301 0 chr11 4036423 4036586 -144746886 - MIR SINE MIR -23 239 28 2317 222 58 30 chr11 4037499 4038816 -144744656 + L1M2 LINE L1 2295 3652 -3196 550 290 68 17 chr11 4039031 4039324 -144744148 + L1M2 LINE L1 3635 3942 -2906 873 199 10 10 chr11 4039324 4039520 -144743952 + L1M2 LINE L1 4451 4646 -2202 * 4001 203 19 8 chr11 4039519 4040526 -144742946 + L1M2 LINE L1 5164 6178 -743 894 184 6 17 chr11 4041271 4041445 -144742027 + FRAM SINE Alu 1 167 -9 245 387 73 0 chr11 4042149 4042286 -144741186 - MIR SINE MIR -99 163 17 25 65 0 0 chr11 4043170 4043216 -144740256 + AT_rich Low_complexity Low_complexity 1 46 0 1288 223 38 3 chr11 4043342 4043633 -144739839 - MER82 DNA MER2_type -154 499 199 1432 186 108 41 chr11 4043737 4044106 -144739366 + LTR54B LTR ERV1 1 409 -89 1711 155 55 0 chr11 4044106 4044397 -144739075 - AluSx SINE Alu -4 308 2 1432 186 108 41 chr11 4044397 4044490 -144738982 + LTR54B LTR ERV1 409 494 -4 595 253 52 26 chr11 4044921 4045075 -144738397 - MER82 DNA MER2_type -451 202 45 1071 216 132 70 chr11 4045090 4045589 -144737883 - MER61E LTR ERV1 -39 530 1 369 0 0 0 chr11 4045637 4045678 -144737794 + (TG)n Simple_repeat Simple_repeat 2 42 0 1841 258 36 37 chr11 4045716 4046517 -144736955 - L1MA8 LINE L1 0 6355 8 279 150 17 0 chr11 4046795 4046855 -144736617 - LTR54B LTR ERV1 -13 485 425 343 247 12 12 chr11 4047365 4047446 -144736026 - MIR SINE MIR -110 152 72 187 323 31 15 chr11 4047486 4047551 -144735921 - MIR SINE MIR -196 66 1 228 35 0 0 chr11 4048172 4048201 -144735271 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2302 72 0 0 chr11 4048203 4048493 -144734979 - AluY SINE Alu -21 290 1 21 0 0 0 chr11 4048998 4049019 -144734453 + AT_rich Low_complexity Low_complexity 1 21 0 2439 149 4 30 chr11 4049577 4050039 -144733433 + L1MA4 LINE L1 5844 6293 -7 21 0 0 0 chr11 4052497 4052518 -144730954 + AT_rich Low_complexity Low_complexity 1 21 0 2030 109 0 3 chr11 4053193 4053512 -144729960 - AluSx SINE Alu 0 318 1 277 343 0 0 chr11 4054495 4054597 -144728875 - MLT1L LTR MaLR -372 243 142 2207 105 3 0 chr11 4054808 4055114 -144728358 + AluSp SINE Alu 1 307 -6 42 82 0 0 chr11 4055416 4055514 -144727958 + AT_rich Low_complexity Low_complexity 1 98 0 393 197 13 0 chr11 4055534 4055610 -144727862 + Charlie3 DNA MER1_type 1 77 -2633 23 0 0 0 chr11 4056440 4056463 -144727009 + AT_rich Low_complexity Low_complexity 1 23 0 495 301 31 35 chr11 4057010 4057190 -144726282 - L1ME LINE L1 -362 5800 5620 1915 152 27 24 chr11 4057190 4057564 -144725908 + THE1C LTR MaLR 1 375 0 495 301 31 35 chr11 4057564 4057612 -144725860 - L1ME LINE L1 -542 5620 5573 381 268 70 23 chr11 4057615 4057856 -144725616 - L1ME LINE L1 -649 5517 5268 209 60 100 0 chr11 4057886 4057936 -144725536 + (TA)n Simple_repeat Simple_repeat 1 55 0 1021 103 0 0 chr11 4058185 4058321 -144725151 - AluSc SINE Alu -13 296 161 285 286 0 0 chr11 4060160 4060244 -144723228 - L1MC4 LINE L1 -1344 6698 6615 * 290 215 51 0 chr11 4060169 4060248 -144723224 + L1MC4 LINE L1 6614 6696 -1346 21 0 0 0 chr11 4060353 4060374 -144723098 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 4060529 4060559 -144722913 + AT_rich Low_complexity Low_complexity 1 30 0 8054 68 0 8 chr11 4261238 4262370 -144521102 + L1P LINE L1 978 2100 -4046 22 0 0 0 chr11 4262470 4262492 -144520980 + GC_rich Low_complexity Low_complexity 1 22 0 649 222 8 0 chr11 4264010 4264136 -144519336 - Tigger1 DNA MER2_type -2290 128 2 2028 188 91 99 chr11 4264209 4264933 -144518539 + LTR8A LTR ERV1 1 718 -9 346 314 0 8 chr11 4265662 4265783 -144517689 + MER94 DNA DNA 15 134 0 23 0 0 0 chr11 4268915 4268938 -144514534 + AT_rich Low_complexity Low_complexity 1 23 0 34340 38 3 3 chr11 4269066 4274313 -144509159 + L1PA4 LINE L1 912 6153 -2 315 0 0 0 chr11 4276402 4276437 -144507035 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 200 17 0 chr11 4276592 4276652 -144506820 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 250 0 44 chr11 4277292 4277360 -144506112 + L2 LINE L2 3249 3313 0 24 67 0 0 chr11 4277639 4277684 -144505788 + AT_rich Low_complexity Low_complexity 1 45 0 201 357 133 0 chr11 4278516 4278614 -144504858 + L2 LINE L2 3156 3266 -6 1834 110 0 19 chr11 4279110 4279374 -144504098 + AluSq SINE Alu 14 272 -41 349 222 37 0 chr11 4279377 4279512 -144503960 + GA-rich Low_complexity Low_complexity 2 141 0 3870 96 7 4 chr11 4279994 4280544 -144502928 - MER41A LTR ERV1 -2 552 1 655 332 22 0 chr11 4281018 4281241 -144502231 + MIR SINE MIR 35 262 0 192 77 0 0 chr11 4281935 4281961 -144501511 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 4282339 4282363 -144501109 + AT_rich Low_complexity Low_complexity 1 24 0 216 143 0 0 chr11 4283284 4283326 -144500146 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 285 338 152 22 chr11 4283407 4283676 -144499796 - L2 LINE L2 -18 3295 2992 3531 174 52 57 chr11 4284436 4285567 -144497905 - L1MA9 LINE L1 -73 6239 5109 1991 206 30 4 chr11 4285578 4286038 -144497434 + L1MA9 LINE L1 4628 5099 -1047 7592 76 0 6 chr11 4286116 4287164 -144496308 + L1PA3 LINE L1 8 1049 -5097 22977 40 2 0 chr11 4287265 4290946 -144492526 + L1PA3 LINE L1 2493 6182 0 310 321 126 14 chr11 4290995 4291272 -144492200 - L1MCa LINE L1 -4915 1511 1204 495 229 61 79 chr11 4291276 4291490 -144491982 + MSTB1 LTR MaLR 212 421 -11 237 128 0 0 chr11 4292576 4292623 -144490849 + (TC)n Simple_repeat Simple_repeat 1 47 0 722 258 19 0 chr11 4295619 4295774 -144487698 - FRAM SINE Alu -9 167 10 206 264 92 35 chr11 4295785 4295872 -144487600 + MIR3 SINE MIR 113 204 -4 196 223 11 11 chr11 4297156 4297250 -144486222 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 256 30 6 chr11 4297264 4297432 -144486040 + (TA)n Simple_repeat Simple_repeat 1 172 0 234 411 61 17 chr11 4297488 4297668 -144485804 - L2 LINE L2 -188 3084 2897 298 373 128 33 chr11 4298001 4298912 -144484560 - L2 LINE L2 -534 2780 1783 731 323 86 10 chr11 4298919 4299375 -144484097 + L2 LINE L2 2685 3185 -128 554 68 0 0 chr11 4299410 4299483 -144483989 - MADE1 DNA Mariner -7 73 1 25 31 0 0 chr11 4299604 4299636 -144483836 + AT_rich Low_complexity Low_complexity 1 32 0 307 385 24 61 chr11 4299699 4299946 -144483526 - L2 LINE L2 -82 3190 2953 213 382 55 30 chr11 4300214 4300413 -144483059 - L2 LINE L2 -690 2624 2421 255 337 61 32 chr11 4300430 4300676 -144482796 - L2 LINE L2 -1034 2280 2028 262 335 101 59 chr11 4302695 4302982 -144480490 + L2 LINE L2 3012 3310 -3 531 157 22 0 chr11 4303193 4303282 -144480190 + AluJ/FLAM SINE Alu 1 91 -221 1428 199 32 0 chr11 4303283 4303534 -144479938 + AluJo SINE Alu 50 308 -4 2534 59 0 0 chr11 4304078 4304382 -144479090 + AluY SINE Alu 1 304 -7 374 319 59 0 chr11 4304384 4304553 -144478919 + L1ME LINE L1 5485 5663 -458 186 287 202 0 chr11 4304565 4304659 -144478813 + L2 LINE L2 3192 3304 -9 217 224 0 0 chr11 4305032 4305081 -144478391 + (ATG)n Simple_repeat Simple_repeat 3 51 0 462 256 103 39 chr11 4305134 4305337 -144478135 - MIR SINE MIR -44 218 3 240 191 63 0 chr11 4305520 4305583 -144477889 - L1MC1 LINE L1 -1 6332 6266 600 226 40 22 chr11 4305607 4305788 -144477684 - MIR SINE MIR -14 248 63 213 308 0 0 chr11 4306073 4306125 -144477347 + L2 LINE L2 2914 2965 -307 184 353 0 0 chr11 4307168 4307219 -144476253 - MIR SINE MIR -131 131 81 338 325 113 0 chr11 4307432 4307583 -144475889 - MIR SINE MIR -93 169 2 10649 34 9 1 chr11 4307607 4309658 -144473814 + L1PA4 LINE L1 4079 6148 -7 2135 139 35 16 chr11 4310021 4310389 -144473083 + THE1C LTR MaLR 1 375 0 186 346 79 10 chr11 4310847 4310948 -144472524 - MIR SINE MIR -72 190 83 180 200 0 0 chr11 4311211 4311256 -144472216 + A-rich Low_complexity Low_complexity 1 45 0 366 333 18 9 chr11 4312029 4312140 -144471332 + L2 LINE L2 2981 3092 -180 513 230 11 11 chr11 4313348 4313522 -144469950 + CT-rich Low_complexity Low_complexity 1 174 0 1636 195 30 10 chr11 4313558 4313861 -144469611 - AluJb SINE Alu 0 312 4 3069 83 106 176 chr11 4315667 4316592 -144466880 + LTR12 LTR ERV1 1 2428 -10 363 332 93 10 chr11 4316730 4316923 -144466549 - MIR SINE MIR -48 214 6 361 248 28 28 chr11 4316964 4317073 -144466399 - L2 LINE L2 -6 3307 3199 358 357 41 26 chr11 4318430 4318699 -144464773 + L1M4 LINE L1 2466 2738 -3408 299 263 18 9 chr11 4318699 4318813 -144464659 + L1ME3A LINE L1 6049 6163 -7 312 322 59 59 chr11 4318865 4319104 -144464368 - HAL1 LINE L1 -2151 356 118 463 125 0 23 chr11 4319879 4319967 -144463505 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1523 247 146 0 chr11 4320061 4320576 -144462896 + MER90 LTR ERV1 3 592 -22 349 286 79 62 chr11 4320910 4321151 -144462321 + L1ME LINE L1 1075 1319 -5097 563 290 106 24 chr11 4321159 4321761 -144461711 + L1ME LINE L1 1152 2013 -4594 514 186 21 0 chr11 4322010 4322107 -144461365 + Tigger3b DNA MER2_type 1 99 -1132 * 5153 145 42 4 chr11 4322079 4323035 -144460437 + Tigger3b DNA MER2_type 240 1231 0 1419 227 36 74 chr11 4323117 4323642 -144459830 + MLT1D LTR MaLR 1 505 0 41609 40 7 0 chr11 4323854 4330012 -144453460 + L1PA3 LINE L1 3 6198 0 3077 90 2 0 chr11 4330020 4330441 -144453031 + L1PA7 LINE L1 5733 6154 0 1423 210 49 9 chr11 4330927 4331255 -144452217 - MER2 DNA MER2_type 0 344 4 317 335 62 11 chr11 4331261 4331440 -144452032 + MIR SINE MIR 53 240 -22 23 54 0 0 chr11 4332079 4332116 -144451356 + AT_rich Low_complexity Low_complexity 1 37 0 225 267 40 13 chr11 4332959 4333034 -144450438 + MIR SINE MIR 175 251 -11 264 337 192 4 chr11 4333235 4333490 -144449982 - L2 LINE L2 -1210 2104 1802 2502 146 9 16 chr11 4335759 4335891 -144447581 - MER61B LTR ERV1 0 425 294 287 25 25 0 chr11 4335891 4335931 -144447541 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2502 146 9 16 chr11 4335931 4336222 -144447250 - MER61B LTR ERV1 -131 294 5 2196 66 7 10 chr11 4336249 4336550 -144446922 + AluY SINE Alu 1 300 -11 3619 206 36 33 chr11 4337493 4338178 -144445294 + L1MC3 LINE L1 5726 6416 -1369 2953 203 122 6 chr11 4338178 4338883 -144444589 + LTR48 LTR ERV1 1 787 0 3619 206 36 33 chr11 4338883 4339176 -144444296 + L1MC3 LINE L1 6416 6707 -1078 743 243 57 29 chr11 4339379 4339761 -144443711 + Charlie2 DNA MER1_type 2413 2805 -57 991 167 69 0 chr11 4339761 4339965 -144443507 - Tigger1 DNA MER2_type -1 2417 2200 2156 150 26 3 chr11 4340076 4340463 -144443009 - L1MA4A LINE L1 -6 6297 5902 306 267 35 69 chr11 4340486 4340602 -144442870 + MIR SINE MIR 1 112 -150 243 272 37 0 chr11 4340794 4340875 -144442597 + MIR SINE MIR 119 202 -60 239 133 22 0 chr11 4341474 4341519 -144441953 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 22 35 0 0 chr11 4341520 4341549 -144441923 + AT_rich Low_complexity Low_complexity 1 29 0 1330 169 13 30 chr11 4341804 4342041 -144441431 + AluJo SINE Alu 71 303 -9 763 198 93 0 chr11 4342235 4342397 -144441075 + MER5B DNA MER1_type 1 177 -1 270 288 99 11 chr11 4342968 4343059 -144440413 - MIR SINE MIR -102 106 20 347 327 101 12 chr11 4343322 4343490 -144439982 - L3 LINE CR1 -48 1529 1347 359 294 24 76 chr11 4343571 4343782 -144439690 + L2 LINE L2 3114 3313 0 201 403 57 8 chr11 4344092 4344216 -144439256 + L2 LINE L2 3141 3270 -2 240 379 148 6 chr11 4344220 4344389 -144439083 + L3 LINE CR1 1046 1238 -339 370 291 191 24 chr11 4344421 4344631 -144438841 + L3 LINE CR1 1331 1575 -2 198 284 222 37 chr11 4345702 4345864 -144437608 + MIR SINE MIR 1 192 -70 255 103 0 0 chr11 4347269 4347308 -144436164 + (TC)n Simple_repeat Simple_repeat 2 40 0 652 333 6 6 chr11 4347712 4347895 -144435577 - MER5A DNA MER1_type -5 184 2 368 314 9 0 chr11 4348036 4348141 -144435331 - MER5A DNA MER1_type -83 106 1 302 320 66 40 chr11 4350750 4351022 -144432450 + L2 LINE L2 1819 2097 -1217 2805 44 3 0 chr11 4353937 4354279 -144429193 + L1PA5 LINE L1 5804 6146 -8 239 215 38 0 chr11 4354365 4354444 -144429028 + L1MC4 LINE L1 7960 8041 -1 189 359 26 13 chr11 4354751 4354829 -144428643 - L2 LINE L2 -87 3185 3107 479 272 92 29 chr11 4355315 4355562 -144427910 + LTR33A LTR ERVL 161 462 -61 892 281 141 23 chr11 4355576 4356256 -144427216 + LTR50 LTR ERVL 1 791 -4 214 335 53 21 chr11 4357527 4357649 -144425823 + MIR3 SINE MIR 14 138 -103 2130 127 0 0 chr11 4358129 4358420 -144425052 + AluSx SINE Alu 3 293 -19 184 346 103 9 chr11 4358454 4358561 -144424911 - MIR3 SINE MIR -87 121 5 938 50 0 0 chr11 4358800 4358920 -144424552 - L1PA8A LINE L1 -187 5944 5825 373 74 0 0 chr11 4358920 4358970 -144424502 + L1PA8 LINE L1 6117 6170 -2 236 296 54 18 chr11 4359041 4359152 -144424320 + MIR SINE MIR 106 256 -6 2367 63 6 31 chr11 4360243 4360562 -144422910 + AluY SINE Alu 1 311 0 215 324 43 2 chr11 4362746 4362932 -144420540 - MIR SINE MIR -1 261 24 510 181 0 0 chr11 4363552 4363657 -144419815 + GA-rich Low_complexity Low_complexity 2 106 0 729 136 42 8 chr11 4364554 4364672 -144418800 - L1PA15 LINE L1 0 6165 6044 2004 168 23 15 chr11 4364678 4365037 -144418435 + MSTA LTR MaLR 19 355 0 7742 199 20 7 chr11 4365037 4367432 -144416040 - L1PA16 LINE L1 -118 6699 4279 5545 114 25 28 chr11 4367470 4368356 -144415116 + L1PA13 LINE L1 5280 6162 -1 565 256 63 0 chr11 4368352 4368543 -144414929 - L1PA16 LINE L1 -4817 1970 1768 * 1772 257 60 14 chr11 4368859 4369412 -144414060 - L1PA16 LINE L1 -4986 1801 1224 2002 300 43 34 chr11 4369545 4370288 -144413184 - L1PA16 LINE L1 -6037 750 1 6960 21 4 16 chr11 4372589 4373220 -144410252 - L1PA2 LINE L1 -6 6149 5529 2798 16 0 0 chr11 4373220 4373526 -144409946 + AluYa5 SINE Alu 1 306 -5 6960 21 4 16 chr11 4373526 4373712 -144409760 - L1PA2 LINE L1 -626 5529 5342 6122 29 7 0 chr11 4373710 4374440 -144409032 + L1PA2 LINE L1 4598 5332 -814 * 43344 36 24 1 chr11 4377118 4382841 -144400631 - L1PA3 LINE L1 -298 5857 1 1316 204 23 4 chr11 4383163 4383428 -144400044 - L1MA10 LINE L1 -68 6266 5997 494 309 7 20 chr11 4383510 4383662 -144399810 - MIR SINE MIR -85 177 28 303 296 191 16 chr11 4383955 4384144 -144399328 + MIR SINE MIR 41 262 0 936 28 37 0 chr11 4384590 4384729 -144398743 + L1PA2 LINE L1 6030 6172 0 252 221 15 15 chr11 4384746 4384814 -144398658 + A-rich Low_complexity Low_complexity 5 72 0 319 256 163 47 chr11 4385813 4385942 -144397530 - MIR SINE MIR -59 203 60 1236 245 96 22 chr11 4386713 4386988 -144396484 + L2 LINE L2 2752 3005 -308 2069 160 28 50 chr11 4386988 4387387 -144396085 + MLT1B LTR MaLR 1 390 0 1236 245 96 22 chr11 4387387 4387622 -144395850 + L2 LINE L2 3005 3302 -11 281 384 16 0 chr11 4388267 4388392 -144395080 + MIR3 SINE MIR 11 137 -71 223 295 54 36 chr11 4388536 4388648 -144394824 - MIR SINE MIR -83 179 66 300 288 27 63 chr11 4388682 4388793 -144394679 - MIR SINE MIR -81 127 21 759 246 121 0 chr11 4391246 4391461 -144392011 + MIR SINE MIR 10 250 -12 22 0 0 0 chr11 4392090 4392112 -144391360 + AT_rich Low_complexity Low_complexity 1 22 0 244 158 26 0 chr11 4392358 4392396 -144391076 + L2 LINE L2 3213 3251 -21 21 36 0 0 chr11 4393615 4393643 -144389829 + AT_rich Low_complexity Low_complexity 1 28 0 1902 136 8 0 chr11 4393858 4394122 -144389350 - AluSq SINE Alu -47 266 1 210 308 0 96 chr11 4394249 4394353 -144389119 + MIR3 SINE MIR 10 103 -105 435 289 123 24 chr11 4395795 4396006 -144387466 + MIR SINE MIR 28 259 -3 708 281 0 6 chr11 4396188 4396359 -144387113 + L1M3c LINE L1 1357 1526 -5970 * 1821 234 79 24 chr11 4396354 4397116 -144386356 + L1M3c LINE L1 2943 3752 -3813 2029 194 29 22 chr11 4397125 4397538 -144385934 - MER88 LTR ERVL -2 462 47 207 0 0 0 chr11 4398230 4398253 -144385219 + (A)n Simple_repeat Simple_repeat 1 23 0 1426 92 67 0 chr11 4398416 4398611 -144384861 + AluSg/x SINE Alu 87 294 -18 1162 203 14 5 chr11 4398912 4399134 -144384338 + HERVL74 LTR ERVL 1869 2092 -3593 4558 206 11 38 chr11 4399137 4400083 -144383389 + HERVL74 LTR ERVL 2421 3340 -2345 983 177 0 12 chr11 4400065 4400229 -144383243 + HERVL74 LTR ERVL 3479 3640 -2045 * 548 324 131 35 chr11 4400533 4401043 -144382429 + L2 LINE L2 2133 2691 -623 584 254 97 91 chr11 4401612 4402132 -144381340 + MER65B LTR ERV1 1 445 0 312 346 40 25 chr11 4402615 4402817 -144380655 + L2 LINE L2 2751 2955 -359 1862 52 9 4 chr11 4402958 4403188 -144380284 - L1PA6 LINE L1 -7 6147 5917 513 309 85 50 chr11 4403188 4403719 -144379753 + L2 LINE L2 2465 3094 -219 671 266 34 34 chr11 4403789 4403996 -144379476 + MIR SINE MIR 20 226 -36 368 341 24 8 chr11 4404032 4404155 -144379317 + L2 LINE L2 3139 3263 -9 273 255 108 0 chr11 4404172 4404274 -144379198 + L1ME4a LINE L1 5840 5952 -169 706 284 87 18 chr11 4405053 4405282 -144378190 + MIR SINE MIR 13 257 -5 2453 103 39 25 chr11 4406669 4407028 -144376444 - THE1B LTR MaLR 0 364 1 275 360 55 55 chr11 4407597 4407978 -144375494 + L2 LINE L2 2910 3290 -23 2122 286 143 52 chr11 4411464 4412610 -144370862 - L2 LINE L2 -767 2547 1507 3534 77 41 0 chr11 4412610 4413052 -144370420 - LTR46 LTR ERV1 0 460 1 2122 286 143 52 chr11 4413052 4413076 -144370396 - L2 LINE L2 -1807 1507 1487 845 227 32 16 chr11 4413076 4413261 -144370211 + MER5A DNA MER1_type 2 189 0 2122 286 143 52 chr11 4413261 4413423 -144370049 - L2 LINE L2 -1827 1487 1092 587 351 108 6 chr11 4413467 4413820 -144369652 - L2 LINE L2 -2810 504 116 402 235 73 29 chr11 4414020 4414156 -144369316 + L2 LINE L2 2507 2648 -666 511 246 81 0 chr11 4420134 4420273 -144363199 - MIR SINE MIR -49 213 63 357 257 140 29 chr11 4420989 4421160 -144362312 - MIR SINE MIR -44 218 29 2151 130 0 3 chr11 4421989 4422289 -144361183 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr11 4422723 4422745 -144360727 + (TA)n Simple_repeat Simple_repeat 2 23 0 2266 127 0 0 chr11 4422745 4423052 -144360420 - AluSx SINE Alu -5 307 1 329 294 29 52 chr11 4424391 4424527 -144358945 - MIR SINE MIR -109 153 21 577 233 109 57 chr11 4424725 4424885 -144358587 + MIR SINE MIR 25 198 -64 560 14 14 0 chr11 4424885 4424954 -144358518 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 577 233 109 57 chr11 4424954 4424986 -144358486 + MIR SINE MIR 198 227 -35 475 344 54 13 chr11 4429086 4429310 -144354162 - MIR SINE MIR -10 252 20 1366 77 33 0 chr11 4429826 4430008 -144353464 + L1PA13 LINE L1 5975 6162 -1 2353 87 0 22 chr11 4430486 4430797 -144352675 + AluSg SINE Alu 1 304 -6 193 308 0 15 chr11 4431616 4431681 -144351791 - MIR3 SINE MIR -139 69 6 3586 80 14 12 chr11 4431708 4432193 -144351279 - LTR15 LTR ERV1 -7 486 1 858 249 12 70 chr11 4432858 4433115 -144350357 + MIR SINE MIR 21 262 0 2190 128 3 0 chr11 4433209 4433513 -144349959 - AluSx SINE Alu -7 305 1 228 322 96 17 chr11 4434700 4434815 -144348657 + MIR SINE MIR 90 213 -49 27 29 0 0 chr11 4436160 4436194 -144347278 + AT_rich Low_complexity Low_complexity 1 34 0 2253 119 3 0 chr11 4436351 4436662 -144346810 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 4436777 4436805 -144346667 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 4436924 4436956 -144346516 + AT_rich Low_complexity Low_complexity 1 32 0 8866 221 23 13 chr11 4437330 4438288 -144345184 - L1P4 LINE L1 -735 5431 4485 2382 76 0 22 chr11 4438288 4438603 -144344869 - AluY SINE Alu -3 308 1 8866 221 23 13 chr11 4438603 4438656 -144344816 - L1P4 LINE L1 -1681 4485 4434 324 70 0 0 chr11 4438656 4438699 -144344773 + (TG)n Simple_repeat Simple_repeat 1 43 0 8866 221 23 13 chr11 4438699 4439915 -144343557 - L1P4 LINE L1 -1732 4434 3178 1950 68 0 4 chr11 4439985 4440220 -144343252 + AluY SINE Alu 67 300 -11 1281 179 74 21 chr11 4440849 4441134 -144342338 - L1 LINE L1 -2147 3999 3700 * 2868 185 12 0 chr11 4441129 4441691 -144341781 + L1 LINE L1 3985 4553 -1593 612 149 0 0 chr11 4441693 4441787 -144341685 + L1PB4 LINE L1 6063 6156 0 1863 168 35 23 chr11 4442315 4442709 -144340763 + L1MA7 LINE L1 5889 6287 -4 388 272 24 16 chr11 4442852 4442977 -144340495 + MIR SINE MIR 20 145 -63 345 257 40 20 chr11 4442995 4443147 -144340325 + L2 LINE L2 2804 2958 -314 28 29 0 0 chr11 4443188 4443223 -144340249 + AT_rich Low_complexity Low_complexity 1 35 0 337 264 132 35 chr11 4443232 4443376 -144340096 + L2 LINE L2 3156 3313 0 5426 78 4 13 chr11 4443378 4444083 -144339389 - L1PA13 LINE L1 0 6163 5465 300 287 25 25 chr11 4446381 4446503 -144336969 + MER94 DNA DNA 1 122 -12 253 243 36 110 chr11 4447560 4447717 -144335755 + L1MC5 LINE L1 7402 7526 -435 2398 76 0 0 chr11 4447717 4448018 -144335454 - AluSx SINE Alu -11 301 1 253 243 36 110 chr11 4448018 4448169 -144335303 + L1MC5 LINE L1 7526 7687 -274 435 278 29 107 chr11 4448197 4448416 -144335056 + MIR SINE MIR 1 195 -67 2225 96 3 7 chr11 4448416 4448707 -144334765 - AluSg SINE Alu -20 290 1 435 278 29 107 chr11 4448707 4448768 -144334704 + MIR SINE MIR 195 259 -3 275 286 206 0 chr11 4449583 4449709 -144333763 + MIR SINE MIR 47 198 -64 1446 172 0 0 chr11 4449834 4450061 -144333411 - L1PB3 LINE L1 -7 6147 5921 209 203 0 68 chr11 4450742 4450803 -144332669 + T-rich Low_complexity Low_complexity 4 61 -11 1462 195 120 0 chr11 4450803 4451111 -144332361 + MER7A DNA MER2_type 3 345 -1 209 203 0 68 chr11 4451111 4451123 -144332349 + T-rich Low_complexity Low_complexity 61 72 0 237 300 9 91 chr11 4451924 4452034 -144331438 - L2 LINE L2 0 3313 3213 315 267 182 40 chr11 4453749 4453925 -144329547 - MIR SINE MIR -4 258 58 486 270 122 0 chr11 4454430 4454578 -144328894 - MIR SINE MIR -69 193 28 274 372 78 52 chr11 4455015 4455359 -144328113 - L2 LINE L2 -1 3271 2919 247 330 57 0 chr11 4455450 4455538 -144327934 - L2 LINE L2 -44 3228 3136 25 31 0 0 chr11 4455699 4455731 -144327741 + AT_rich Low_complexity Low_complexity 1 32 0 365 300 62 31 chr11 4455785 4455945 -144327527 - MIR SINE MIR -97 165 1 207 383 12 0 chr11 4455952 4456033 -144327439 - L2 LINE L2 -285 2987 2906 198 0 0 0 chr11 4456063 4456085 -144327387 + (TGG)n Simple_repeat Simple_repeat 1 22 0 389 167 13 0 chr11 4456131 4456209 -144327263 + GA-rich Low_complexity Low_complexity 2 80 0 501 47 0 0 chr11 4456210 4456274 -144327198 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 440 297 59 18 chr11 4456489 4456711 -144326761 + MIR SINE MIR 1 231 -31 322 361 12 0 chr11 4458271 4458440 -144325032 + MER5B DNA MER1_type 5 175 -3 522 317 119 39 chr11 4458685 4459205 -144324267 + L2 LINE L2 2232 2793 -521 181 242 48 48 chr11 4459461 4459523 -144323949 + MIR3 SINE MIR 3 64 -144 2275 112 0 0 chr11 4459546 4459842 -144323630 + AluSg SINE Alu 1 296 -14 212 340 128 0 chr11 4459954 4460048 -144323424 + MIR SINE MIR 48 153 -109 184 283 250 0 chr11 4461383 4461475 -144321997 - MIR SINE MIR -60 148 34 418 266 55 9 chr11 4461583 4461692 -144321780 - MER81 DNA DNA 0 114 1 248 346 40 0 chr11 4461694 4461795 -144321677 + MIR SINE MIR 38 142 -120 240 86 0 0 chr11 4462536 4462571 -144320901 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 327 107 0 chr11 4462778 4462928 -144320544 - MIR SINE MIR -3 259 94 448 261 12 8 chr11 4464004 4464135 -144319337 + L2 LINE L2 2840 2976 -298 24 0 0 0 chr11 4464185 4464209 -144319263 + AT_rich Low_complexity Low_complexity 1 24 0 226 347 32 32 chr11 4464343 4464467 -144319005 + L2 LINE L2 3175 3298 -15 1280 187 129 16 chr11 4466407 4466717 -144316755 + MER7A DNA MER2_type 3 345 -1 1119 219 59 22 chr11 4467279 4467599 -144315873 - L1M4c LINE L1 -4892 1492 1161 * 2456 94 1 80 chr11 4467595 4467876 -144315596 - L1M1 LINE L1 -398 5756 5495 702 60 0 0 chr11 4467876 4467960 -144315512 - AluSg/x SINE Alu -12 297 214 2456 94 1 80 chr11 4467960 4468116 -144315356 - L1M1 LINE L1 -659 5495 5328 2923 104 0 0 chr11 4468123 4468508 -144314964 - L1P3 LINE L1 -6055 406 22 748 69 0 10 chr11 4468764 4468865 -144314607 - AluSg/x SINE Alu -1 311 212 2279 86 0 10 chr11 4469565 4469857 -144313615 + AluSc SINE Alu 1 289 -20 360 89 143 0 chr11 4470082 4470138 -144313334 - AluSg/x SINE Alu -20 280 217 193 313 83 10 chr11 4470658 4470754 -144312718 - L2 LINE L2 -18 3295 3193 284 274 167 43 chr11 4470809 4470995 -144312477 + L2 LINE L2 2151 2359 -955 2442 48 0 7 chr11 4471557 4471852 -144311620 - AluY SINE Alu -18 293 1 1120 174 24 14 chr11 4472708 4472920 -144310552 + MER20 DNA MER1_type 1 214 -5 217 178 0 44 chr11 4473629 4473674 -144309798 + C-rich Low_complexity Low_complexity 2 44 0 727 265 38 9 chr11 4474202 4474413 -144309059 + MIR SINE MIR 14 230 -32 278 264 19 55 chr11 4474976 4475066 -144308406 - MER5A DNA MER1_type 0 189 90 1132 186 115 0 chr11 4475556 4475835 -144307637 - MER33 DNA MER1_type -13 311 1 1290 235 81 40 chr11 4475902 4476332 -144307140 - L1ME1 LINE L1 -5 6161 5714 2222 75 7 0 chr11 4476478 4476801 -144306671 - AluY SINE Alu 0 325 1 276 304 0 0 chr11 4476801 4476893 -144306579 - L1M4 LINE L1 -1904 4242 4151 284 243 14 0 chr11 4476895 4476969 -144306503 - L1M4 LINE L1 -2120 4026 3952 * 792 236 12 13 chr11 4476954 4477174 -144306298 - L1M2 LINE L1 -4324 2059 1471 2136 88 3 11 chr11 4477221 4477505 -144305967 + AluSp SINE Alu 22 303 -10 209 401 6 0 chr11 4478173 4478340 -144305132 + (TGG)n Simple_repeat Simple_repeat 1 168 0 282 184 158 53 chr11 4478993 4479069 -144304403 + MER96 DNA MER1_type? 1 84 -91 296 294 76 21 chr11 4480446 4480684 -144302788 - L1ME4a LINE L1 -17 6104 5854 4609 108 75 11 chr11 4480777 4481506 -144301966 - L1PA13 LINE L1 0 6163 5388 2182 54 65 7 chr11 4481702 4481980 -144301492 + AluY SINE Alu 2 295 -16 559 221 67 36 chr11 4482472 4482667 -144300805 + LTR37A LTR ERV1 226 426 0 2787 161 13 23 chr11 4482723 4483332 -144300140 + pTR5 LTR ERV1 743 1345 -1093 3225 128 234 53 chr11 4483347 4484043 -144299429 + LTR12 LTR ERV1 5 826 0 2535 127 148 7 chr11 4484276 4484392 -144299080 - LTR45B LTR ERV1 0 489 391 2315 81 3 3 chr11 4484392 4484689 -144298783 + AluSp SINE Alu 1 297 -16 2535 127 148 7 chr11 4484689 4484999 -144298473 - LTR45B LTR ERV1 -98 391 3 950 251 64 20 chr11 4485303 4485554 -144297918 - MIR SINE MIR 0 262 1 308 300 0 47 chr11 4485591 4485660 -144297812 + GA-rich Low_complexity Low_complexity 2 73 -71 1945 175 7 0 chr11 4485660 4485968 -144297504 + AluJo SINE Alu 1 310 -2 308 300 0 47 chr11 4485968 4486048 -144297424 + GA-rich Low_complexity Low_complexity 73 144 0 1011 196 44 22 chr11 4486941 4487170 -144296302 - L1ME4a LINE L1 -347 5819 5586 1529 182 23 20 chr11 4487428 4487730 -144295742 - AluJb SINE Alu -7 305 3 1942 68 129 0 chr11 4488845 4489108 -144294364 - AluSc SINE Alu -12 297 1 1624 117 0 35 chr11 4489740 4490022 -144293450 - AluY SINE Alu -39 272 1 224 359 165 0 chr11 4490493 4490699 -144292773 + MIR SINE MIR 19 258 -4 185 258 81 16 chr11 4491603 4491665 -144291807 + MIR SINE MIR 49 114 -148 2380 87 0 0 chr11 4491795 4492093 -144291379 + AluSx SINE Alu 1 298 -14 617 319 178 9 chr11 4492321 4492478 -144290994 - L2 LINE L2 -2 3311 3182 2175 82 0 11 chr11 4492478 4492757 -144290715 + AluY SINE Alu 1 276 -35 617 319 178 9 chr11 4492757 4492947 -144290525 - L2 LINE L2 -131 3182 2905 2233 127 0 0 chr11 4492993 4493293 -144290179 + AluSx SINE Alu 3 302 -10 1842 119 37 0 chr11 4494325 4494482 -144288990 - AluSx SINE Alu -22 290 117 240 35 0 0 chr11 4494482 4494511 -144288961 + (TG)n Simple_repeat Simple_repeat 2 30 0 1842 119 37 0 chr11 4494511 4494622 -144288850 - AluSx SINE Alu -195 117 12 22 70 0 0 chr11 4495621 4495664 -144287808 + AT_rich Low_complexity Low_complexity 1 43 0 2262 117 0 0 chr11 4498049 4498356 -144285116 + AluSx SINE Alu 1 307 -5 471 279 80 40 chr11 4499010 4499236 -144284236 - LTR68 LTR ERV1 -505 235 1 440 269 119 36 chr11 4499631 4499824 -144283648 + MER63A DNA MER1_type 1 209 -1 3116 197 66 8 chr11 4500036 4500690 -144282782 - L1MB5 LINE L1 -8 6166 5475 204 89 0 54 chr11 4500690 4500746 -144282726 + (TA)n Simple_repeat Simple_repeat 2 54 0 35 63 0 0 chr11 4501155 4501218 -144282254 + AT_rich Low_complexity Low_complexity 1 63 0 196 393 60 0 chr11 4501291 4501474 -144281998 - L2 LINE L2 -928 2386 2193 245 203 31 16 chr11 4501586 4501650 -144281822 - LTR54 LTR ERV1 -47 463 399 3630 220 40 21 chr11 4503749 4504780 -144278692 + L1MB7 LINE L1 5115 6168 -16 253 123 18 18 chr11 4507727 4507784 -144275688 + GA-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 4507784 4507810 -144275662 + (TG)n Simple_repeat Simple_repeat 2 27 0 190 210 0 49 chr11 4508529 4508610 -144274862 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1985 113 0 15 chr11 4509005 4509279 -144274193 + AluSx SINE Alu 27 296 -16 724 201 152 0 chr11 4509540 4509704 -144273768 - MER5A DNA MER1_type 0 189 1 337 269 30 82 chr11 4509842 4509865 -144273607 - MIR SINE MIR -63 145 122 2541 40 0 3 chr11 4509865 4510163 -144273309 + AluY SINE Alu 15 311 0 337 269 30 82 chr11 4510163 4510273 -144273199 - MIR SINE MIR -86 122 19 2424 78 0 0 chr11 4510597 4510891 -144272581 - AluSx SINE Alu -18 294 1 656 28 0 0 chr11 4510892 4510963 -144272509 - AluSg/x SINE Alu -170 140 70 21 57 0 0 chr11 4512974 4513009 -144270463 + AT_rich Low_complexity Low_complexity 1 35 0 567 248 75 37 chr11 4513854 4513936 -144269536 + MIR SINE MIR 41 118 -144 1753 190 3 0 chr11 4513936 4514241 -144269231 - AluSx SINE Alu -5 307 2 567 248 75 37 chr11 4514241 4514372 -144269100 + MIR SINE MIR 118 262 0 24 32 0 0 chr11 4514611 4514642 -144268830 + AT_rich Low_complexity Low_complexity 1 31 0 3979 49 0 0 chr11 4514642 4515131 -144268341 - L1PA5 LINE L1 0 6154 5666 359 406 32 5 chr11 4515157 4515376 -144268096 + L2 LINE L2 2869 3093 -220 746 269 103 17 chr11 4515502 4515886 -144267586 + L1MC/D LINE L1 5317 5744 -625 382 233 39 39 chr11 4516029 4516158 -144267314 + MIR SINE MIR 77 205 -57 291 233 69 74 chr11 4516175 4516364 -144267108 - L1ME LINE L1 -364 5757 5570 26 74 0 0 chr11 4516537 4516591 -144266881 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr11 4516823 4516852 -144266620 + AT_rich Low_complexity Low_complexity 1 29 0 1165 201 107 105 chr11 4517185 4517736 -144265736 - MER34B LTR ERV1 -2 563 12 1943 184 5 29 chr11 4517741 4518115 -144265357 - MLT1A1 LTR MaLR 0 365 1 2131 119 0 3 chr11 4518163 4518466 -144265006 - AluSq SINE Alu -11 302 1 823 93 0 0 chr11 4518548 4518656 -144264816 - AluSg/x SINE Alu -2 307 200 27 62 0 0 chr11 4568657 4568705 -144214767 + AT_rich Low_complexity Low_complexity 1 48 0 6953 53 9 30 chr11 4568705 4569522 -144213950 - L1PA7 LINE L1 -4 6150 5349 2213 111 7 3 chr11 4569522 4569820 -144213652 + AluSp SINE Alu 1 299 -14 6953 53 9 30 chr11 4569820 4570182 -144213290 - L1PA7 LINE L1 -805 5349 4981 947 241 38 70 chr11 4571119 4571630 -144211842 - PABL_B LTR ERV1 -21 646 10 3052 232 34 53 chr11 4571842 4572864 -144210608 + L1MB5 LINE L1 3156 4157 -1989 1362 124 16 31 chr11 4572864 4573121 -144210351 + L1MA3 LINE L1 6050 6302 -3 3052 232 34 53 chr11 4573121 4573198 -144210274 + L1MB5 LINE L1 4157 4234 -1912 2345 107 0 0 chr11 4573247 4573556 -144209916 - AluY SINE Alu -2 309 1 1806 213 45 28 chr11 4574015 4574523 -144208949 - L1PB4 LINE L1 -95 6061 5545 23 33 0 0 chr11 4575308 4575338 -144208134 + AT_rich Low_complexity Low_complexity 1 30 0 267 191 52 26 chr11 4577129 4577244 -144206228 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 22 56 0 0 chr11 4577511 4577547 -144205925 + AT_rich Low_complexity Low_complexity 1 36 0 286 317 24 43 chr11 4578103 4578267 -144205205 + L2 LINE L2 1873 2033 -1281 278 276 0 13 chr11 4578310 4578386 -144205086 + L2 LINE L2 2164 2238 -1076 3313 234 23 26 chr11 4578813 4579810 -144203662 + L1MB5 LINE L1 4308 5301 -845 293 256 95 31 chr11 4579893 4580131 -144203341 + L1MC/D LINE L1 5525 5793 -377 1206 269 25 47 chr11 4580172 4580485 -144202987 + L1M4 LINE L1 2521 2839 -3307 220 20 59 39 chr11 4580485 4580536 -144202936 + (TA)n Simple_repeat Simple_repeat 1 52 0 1206 269 25 47 chr11 4580536 4580650 -144202822 + L1M4 LINE L1 2839 2954 -3192 1872 127 13 43 chr11 4580650 4580949 -144202523 + AluSx SINE Alu 2 291 -21 1206 269 25 47 chr11 4580949 4581249 -144202223 + L1M4 LINE L1 2954 3233 -2913 466 336 34 10 chr11 4581335 4581543 -144201929 + MIR SINE MIR 50 262 0 189 0 0 0 chr11 4582106 4582127 -144201345 + (A)n Simple_repeat Simple_repeat 1 21 0 613 174 16 5 chr11 4583787 4583973 -144199499 + L1MA4 LINE L1 6033 6297 -3 24 32 0 0 chr11 4584027 4584058 -144199414 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 4584408 4584436 -144199036 + AT_rich Low_complexity Low_complexity 1 28 0 2139 104 3 7 chr11 4584550 4584839 -144198633 - AluSc SINE Alu -21 288 1 192 187 165 44 chr11 4584937 4585028 -144198444 - L2 LINE L2 -4 3309 3208 21 0 0 0 chr11 4585281 4585302 -144198170 + AT_rich Low_complexity Low_complexity 1 21 0 203 321 71 9 chr11 4586097 4586209 -144197263 + MIR SINE MIR 137 255 -7 297 243 14 0 chr11 4587540 4587614 -144195858 - L1M4 LINE L1 -1983 4399 4325 * 308 229 16 16 chr11 4587612 4587734 -144195738 - L1M4 LINE L1 -3951 2433 2312 890 217 46 132 chr11 4587739 4588216 -144195256 + L1MB5 LINE L1 5326 5753 -431 2362 172 36 5 chr11 4588216 4588659 -144194813 - MSTB2 LTR MaLR 0 457 1 890 217 46 132 chr11 4588659 4588721 -144194751 + L1MB5 LINE L1 5753 5819 -365 558 220 16 44 chr11 4588955 4589137 -144194335 + L1MB5 LINE L1 5815 5991 -183 2403 82 7 0 chr11 4589315 4589620 -144193852 + AluSp SINE Alu 1 307 -6 2178 104 17 0 chr11 4589948 4590245 -144193227 + AluSq SINE Alu 1 302 -11 1105 176 13 63 chr11 4590387 4590626 -144192846 - AluJo SINE Alu 0 312 86 1931 129 26 26 chr11 4591197 4591507 -144191965 + AluSg SINE Alu 1 310 0 180 0 0 0 chr11 4592276 4592296 -144191176 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 296 282 46 8 chr11 4592356 4592497 -144190975 - MIR SINE MIR -64 144 13 21 0 0 0 chr11 4592588 4592609 -144190863 + AT_rich Low_complexity Low_complexity 1 21 0 255 352 37 0 chr11 4594355 4594463 -144189009 + MIR SINE MIR 18 129 -133 2354 103 3 0 chr11 4594464 4594776 -144188696 - AluSq SINE Alu 0 313 1 1548 111 0 8 chr11 4594823 4595067 -144188405 + L1MA6 LINE L1 6059 6300 0 28 29 0 0 chr11 4595407 4595442 -144188030 + AT_rich Low_complexity Low_complexity 1 35 0 1715 155 22 4 chr11 4595535 4595848 -144187624 - AluJb SINE Alu 0 318 1 381 22 0 0 chr11 4597608 4597654 -144185818 + (T)n Simple_repeat Simple_repeat 1 46 0 34 24 0 0 chr11 4597658 4597699 -144185773 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 4597933 4597954 -144185518 + AT_rich Low_complexity Low_complexity 1 21 0 865 180 15 34 chr11 4598083 4598289 -144185183 + L1MB3 LINE L1 5918 6119 -64 2315 66 3 0 chr11 4598734 4599023 -144184449 - AluY SINE Alu -21 290 1 822 295 102 24 chr11 4599264 4599509 -144183963 + L1ME LINE L1 48 273 -5797 2325 89 0 0 chr11 4599509 4599802 -144183670 + AluSg SINE Alu 1 293 -17 822 295 102 24 chr11 4599802 4600058 -144183414 + L1ME LINE L1 273 588 -5482 1081 159 15 5 chr11 4600431 4600626 -144182846 - LTR1 LTR ERV1 0 785 589 2542 124 90 5 chr11 4600626 4601071 -144182401 - L1PA8 LINE L1 -4 6168 5686 359 245 14 35 chr11 4601101 4601244 -144182228 + L1ME LINE L1 49 188 -5882 2353 181 66 34 chr11 4601246 4601803 -144181669 - LTR1 LTR ERV1 -203 582 8 2246 102 3 16 chr11 4603346 4603660 -144179812 - AluSx SINE Alu 0 312 3 502 271 82 47 chr11 4603707 4604132 -144179340 - L1M4 LINE L1 -2042 4104 3665 1347 186 42 0 chr11 4604643 4604950 -144178522 + MER33 DNA MER1_type 5 324 0 2065 206 93 8 chr11 4606814 4607479 -144175993 - L1M4 LINE L1 -3108 3038 2317 2301 95 3 13 chr11 4607487 4607802 -144175670 - AluSx SINE Alu 0 312 1 2477 25 0 59 chr11 4607837 4608160 -144175312 - AluY SINE Alu -7 304 1 379 152 3 2 chr11 4608175 4608244 -144175228 + AluSp/q SINE Alu 236 296 -7 24 0 0 0 chr11 4608337 4608361 -144175111 + AT_rich Low_complexity Low_complexity 1 24 0 2214 110 10 0 chr11 4608647 4608946 -144174526 - AluSq SINE Alu -11 302 1 24 0 0 0 chr11 4608946 4608970 -144174502 + AT_rich Low_complexity Low_complexity 1 24 0 566 330 13 51 chr11 4609344 4609396 -144174076 - MIR SINE MIR -23 239 187 2314 96 0 3 chr11 4609396 4609699 -144173773 - AluSq SINE Alu -11 302 1 566 330 13 51 chr11 4609699 4609882 -144173590 - MIR SINE MIR -75 187 13 658 254 30 6 chr11 4609914 4610079 -144173393 + MER58A DNA MER1_type 24 192 -32 1689 74 0 0 chr11 4610079 4610304 -144173168 + AluSg/x SINE Alu 83 307 0 969 237 47 122 chr11 4610959 4611264 -144172208 - L1MCa LINE L1 -5571 651 325 2361 85 16 0 chr11 4611264 4611571 -144171901 - AluSx SINE Alu 0 312 1 969 237 47 122 chr11 4611571 4611739 -144171733 - L1MCa LINE L1 -5897 325 140 2149 87 0 75 chr11 4611739 4612072 -144171400 - AluSg SINE Alu -2 308 1 969 237 47 122 chr11 4612072 4612164 -144171308 - L1MCa LINE L1 -6082 140 43 621 131 0 10 chr11 4613185 4613284 -144170188 + MER4A LTR ERV1 1 98 -566 1597 150 12 22 chr11 4613284 4613631 -144169841 + MER4A LTR ERV1 261 662 -2 1156 126 26 21 chr11 4613718 4613735 -144169737 + AluSp SINE Alu 120 135 -178 2322 100 0 0 chr11 4613735 4614044 -144169428 + AluY SINE Alu 1 309 -2 1156 126 26 21 chr11 4614044 4614217 -144169255 + AluSp SINE Alu 135 311 -2 1396 110 71 21 chr11 4614344 4614669 -144168803 - MER4A LTR ERV1 0 651 252 682 117 8 16 chr11 4614691 4614819 -144168653 - MER4A LTR ERV1 -537 127 1 393 69 0 235 chr11 4614874 4614927 -144168545 + MADE1 DNA Mariner 1 20 -60 2303 84 0 43 chr11 4614927 4615250 -144168222 - AluSg SINE Alu -1 309 1 289 117 14 0 chr11 4615250 4615300 -144168172 + MADE1 DNA Mariner 37 80 0 393 69 0 235 chr11 4615250 4615298 -144168174 + MADE1 DNA Mariner 20 78 -2 220 292 0 0 chr11 4615750 4615798 -144167674 + MER5B DNA MER1_type 2 49 -129 235 263 0 0 chr11 4615800 4615813 -144167659 - L1MA10 LINE L1 -2 6332 6320 443 254 124 6 chr11 4615813 4615990 -144167482 - L1ME1 LINE L1 -6 6160 5963 1017 190 46 32 chr11 4616165 4616381 -144167091 - MER20 DNA MER1_type 0 219 1 195 42 0 0 chr11 4616947 4616971 -144166501 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 259 86 91 chr11 4618119 4618170 -144165302 - L2 LINE L2 -412 2902 2852 2110 121 0 7 chr11 4618170 4618468 -144165004 + AluSq SINE Alu 3 298 -15 351 259 86 91 chr11 4618468 4618670 -144164802 - L2 LINE L2 -462 2852 2649 2180 93 7 14 chr11 4618670 4618960 -144164512 + AluSq SINE Alu 5 292 -21 351 259 86 91 chr11 4618960 4619056 -144164416 - L2 LINE L2 -665 2649 2554 1635 225 29 44 chr11 4620256 4620565 -144162907 - MLT1C LTR MaLR 0 467 164 2386 98 0 0 chr11 4620565 4620862 -144162610 + AluSx SINE Alu 1 297 -15 1635 225 29 44 chr11 4620862 4620961 -144162511 - MLT1C LTR MaLR -303 164 65 2427 62 3 0 chr11 4621272 4621576 -144161896 - AluY SINE Alu -6 305 1 373 337 143 10 chr11 4623367 4623667 -144159805 - L2 LINE L2 -50 3263 2924 718 130 35 0 chr11 4624294 4624409 -144159063 - AluSg1 SINE Alu -189 120 2 494 62 0 16 chr11 4624437 4624501 -144158971 - LTR7 LTR ERV1 -42 408 346 351 0 0 0 chr11 4625722 4625764 -144157708 + (CA)n Simple_repeat Simple_repeat 1 81 0 351 0 0 0 chr11 4625764 4625803 -144157669 + (CA)n Simple_repeat Simple_repeat 2 40 0 2328 80 3 7 chr11 4626526 4626827 -144156645 - AluY SINE Alu -11 300 1 1581 223 41 8 chr11 4627110 4627478 -144155994 + L1MB7 LINE L1 5447 5826 -358 7723 24 0 76 chr11 4627582 4629242 -144154230 + L1PA3 LINE L1 4573 6155 0 1858 216 31 52 chr11 4629336 4629879 -144153593 - L1MA9 LINE L1 -30 6282 5751 39 22 0 0 chr11 4630654 4630700 -144152772 + AT_rich Low_complexity Low_complexity 1 46 0 207 114 0 0 chr11 4632337 4632372 -144151100 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 4632622 4632644 -144150828 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr11 4633431 4633458 -144150014 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 2982 41 0 3 chr11 4633459 4633797 -144149675 - L1PA3 LINE L1 -3 6152 5816 615 251 53 112 chr11 4634358 4634732 -144148740 - MLT2C1 LTR ERVL -2 395 44 * 621 196 67 45 chr11 4634568 4634747 -144148725 - MLT1E3 LTR MaLR -393 231 49 428 316 22 7 chr11 4634752 4634891 -144148581 - MLT2F LTR ERVL -522 141 1 617 324 16 5 chr11 4635215 4635400 -144148072 + MER5A DNA MER1_type 3 189 0 228 200 0 0 chr11 4637760 4637820 -144145652 + (TATG)n Simple_repeat Simple_repeat 2 61 0 304 237 69 92 chr11 4637891 4638022 -144145450 - MIR SINE MIR -13 249 122 1738 60 9 0 chr11 4640552 4640768 -144142704 - L1PA5 LINE L1 -5 6149 5932 2383 81 7 3 chr11 4640774 4641081 -144142391 - AluY SINE Alu -3 308 1 2499 70 0 0 chr11 4641851 4642151 -144141321 - AluY SINE Alu -11 300 1 456 111 0 14 chr11 4643302 4643374 -144140098 - L1P LINE L1 -1268 4878 4808 2299 85 3 10 chr11 4643985 4644290 -144139182 - AluSq SINE Alu -10 303 1 3932 213 24 41 chr11 4644577 4645408 -144138064 + L1M2 LINE L1 1290 2101 -4748 2344 103 0 3 chr11 4645408 4645719 -144137753 + AluSg SINE Alu 1 310 0 3932 213 24 41 chr11 4645719 4645925 -144137547 + L1M2 LINE L1 2101 2309 -4540 1713 151 5 21 chr11 4645921 4646047 -144137425 + L1PA15 LINE L1 4366 4492 -1673 * 2466 90 0 3 chr11 4646047 4646358 -144137114 + AluY SINE Alu 1 310 -1 1713 151 5 21 chr11 4646358 4647949 -144135523 + L1PA15 LINE L1 4492 6158 -7 4648 234 55 7 chr11 4647952 4648956 -144134516 + ERVL LTR ERVL 2877 3928 -1836 * 5333 204 22 2 chr11 4648954 4649936 -144133536 + ERVL LTR ERVL 4325 5326 -438 2366 63 0 0 chr11 4650656 4650972 -144132500 - AluY SINE Alu 0 316 1 2214 118 0 0 chr11 4651376 4651663 -144131809 + AluSg SINE Alu 1 287 -23 288 303 58 10 chr11 4652304 4652458 -144131014 - MIR SINE MIR -64 144 13 330 161 42 8 chr11 4653081 4653199 -144130273 + (TA)n Simple_repeat Simple_repeat 1 122 0 301 175 10 136 chr11 4653211 4653314 -144130158 - L1MC4 LINE L1 -1339 6703 6614 2092 100 0 0 chr11 4653788 4654059 -144129413 - AluSq SINE Alu -12 301 31 1298 168 45 4 chr11 4654185 4654429 -144129043 - MSTB LTR MaLR -172 254 1 671 220 42 37 chr11 4654431 4654622 -144128850 + L1MA9 LINE L1 6083 6274 -38 199 362 116 15 chr11 4654825 4655024 -144128448 - MIR SINE MIR -26 236 18 23 54 0 0 chr11 4656061 4656098 -144127374 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 71 14 chr11 4656913 4657054 -144126418 + MIR3 SINE MIR 7 155 -53 253 272 229 68 chr11 4658167 4658310 -144125162 - MLT1K LTR MaLR 0 588 469 1740 149 83 0 chr11 4658310 4658586 -144124886 + AluSx SINE Alu 1 299 -13 253 272 229 68 chr11 4658586 4658765 -144124707 - MLT1K LTR MaLR -119 469 214 2318 60 53 27 chr11 4658765 4659064 -144124408 - AluY SINE Alu -4 307 1 1476 191 67 0 chr11 4659559 4659826 -144123646 + AluJb SINE Alu 1 285 -27 2470 262 67 72 chr11 4659860 4660802 -144122670 + L1M4c LINE L1 818 1763 -4619 2070 137 3 0 chr11 4660802 4661102 -144122370 - AluSx SINE Alu -3 309 9 2470 262 67 72 chr11 4661102 4662793 -144120679 + L1M4c LINE L1 1763 3544 -2838 1701 251 33 17 chr11 4662835 4663294 -144120178 + L1M3e LINE L1 1 466 -6564 267 104 292 0 chr11 4663312 4663360 -144120112 + L1M4 LINE L1 4914 4975 -1171 * 1085 195 37 18 chr11 4663359 4663631 -144119841 + L1MA8 LINE L1 5858 6134 -157 1446 79 0 0 chr11 4663631 4663809 -144119663 - AluY SINE Alu -15 296 119 634 180 0 0 chr11 4663816 4663916 -144119556 - MER45A DNA AcHobo -16 162 63 466 301 138 22 chr11 4663985 4664261 -144119211 - LTR16C LTR ERVL -25 466 159 201 162 0 0 chr11 4664261 4664298 -144119174 + T-rich Low_complexity Low_complexity 1 37 0 5064 16 2 0 chr11 4664298 4664842 -144118630 - L1PA2 LINE L1 0 6155 5611 9398 27 3 0 chr11 4664842 4666163 -144117309 + L1PA2 LINE L1 4280 5604 -551 818 62 0 174 chr11 4666164 4666325 -144117147 - AluSq/x SINE Alu -179 133 2 328 315 28 9 chr11 4666325 4666432 -144117040 + L1M4c LINE L1 3771 3879 -2503 332 355 123 0 chr11 4669195 4669333 -144114139 + L2 LINE L2 2909 3063 -250 4043 68 20 31 chr11 4669818 4670397 -144113075 - PABL_A LTR ERV1 0 660 87 2219 108 0 0 chr11 4670397 4670693 -144112779 - AluSg SINE Alu -14 296 1 4043 68 20 31 chr11 4670693 4670719 -144112753 - PABL_A LTR ERV1 -573 87 62 1215 133 12 0 chr11 4670721 4670894 -144112578 + AluSq SINE Alu 4 178 -135 5062 110 207 102 chr11 4671358 4672765 -144110707 + pTR5 LTR ERV1 741 2295 -143 2333 54 48 0 chr11 4674187 4674302 -144109170 + AluY SINE Alu 1 109 -202 288 0 0 0 chr11 4674302 4674334 -144109138 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2333 54 48 0 chr11 4674334 4674513 -144108959 + AluY SINE Alu 109 309 -2 327 310 85 99 chr11 4675159 4675280 -144108192 + L2 LINE L2 1626 1747 -1567 1477 156 35 44 chr11 4675280 4675619 -144107853 - L1MA7 LINE L1 0 6291 5956 327 310 85 99 chr11 4675619 4676348 -144107124 + L2 LINE L2 1747 2464 -850 323 325 62 58 chr11 4676838 4677130 -144106342 + L2 LINE L2 3016 3308 -5 514 147 68 0 chr11 4679181 4679311 -144104161 + L1MB1 LINE L1 6008 6161 -28 183 139 0 0 chr11 4681155 4681191 -144102281 + (CA)n Simple_repeat Simple_repeat 1 36 0 492 317 87 48 chr11 4681461 4681944 -144101528 + LTR33 LTR ERVL 16 517 -4 1963 152 0 41 chr11 4682637 4682953 -144100519 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr11 4683033 4683055 -144100417 + AT_rich Low_complexity Low_complexity 1 22 0 1031 329 24 12 chr11 4683089 4683515 -144099957 + LTR16B LTR ERVL 34 464 0 1613 167 9 43 chr11 4683897 4684220 -144099252 + AluJb SINE Alu 1 312 0 1321 309 51 21 chr11 4684649 4685261 -144098211 + HERV16 LTR ERVL 947 1576 -3420 10072 225 23 53 chr11 4685325 4688005 -144095467 + L1P5 LINE L1 1973 4424 -2435 2184 118 0 25 chr11 4688005 4688319 -144095153 + AluSx SINE Alu 1 306 -6 10072 225 23 53 chr11 4688319 4690324 -144093148 + L1P5 LINE L1 4424 6488 -371 870 145 15 0 chr11 4690324 4690455 -144093017 + AluSq/x SINE Alu 1 133 -179 189 0 0 0 chr11 4690455 4690476 -144092996 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 4690671 4690694 -144092778 + AT_rich Low_complexity Low_complexity 1 23 0 375 257 0 0 chr11 4690903 4691016 -144092456 + L1P5 LINE L1 5668 5780 -376 574 214 5 102 chr11 4691021 4691227 -144092245 + AluJb SINE Alu 1 186 -126 350 242 0 40 chr11 4691277 4691404 -144092068 + FLAM_A SINE Alu 25 147 0 827 176 53 88 chr11 4691407 4691669 -144091803 + L1MA8 LINE L1 6035 6287 -4 22 0 0 0 chr11 4691897 4691919 -144091553 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 4692465 4692488 -144090984 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 4692629 4692653 -144090819 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 4692749 4692774 -144090698 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 4693825 4693848 -144089624 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 4695324 4695345 -144088127 + AT_rich Low_complexity Low_complexity 1 21 0 549 89 13 0 chr11 4695563 4695642 -144087830 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr11 4695652 4695680 -144087792 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr11 4695696 4695732 -144087740 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 224 349 82 41 chr11 4696166 4696312 -144087160 + L2 LINE L2 2962 3113 -159 853 270 89 32 chr11 4696757 4697387 -144086085 - L1ME3A LINE L1 -58 6112 5451 1154 99 22 63 chr11 4697681 4697776 -144085696 - L1MA3 LINE L1 0 6305 6208 2153 118 17 0 chr11 4697776 4698064 -144085408 + AluSx SINE Alu 1 293 -19 1154 99 22 63 chr11 4698064 4698190 -144085282 - L1MA3 LINE L1 -97 6208 6093 320 232 19 39 chr11 4700896 4701034 -144082438 + (TAA)n Simple_repeat Simple_repeat 3 139 -15 1736 184 0 0 chr11 4701034 4701338 -144082134 + AluSx SINE Alu 9 312 0 320 232 19 39 chr11 4701338 4701354 -144082118 + (TAA)n Simple_repeat Simple_repeat 139 154 0 2812 19 0 0 chr11 4701557 4701867 -144081605 + AluYb8 SINE Alu 1 310 -8 771 284 23 31 chr11 4702403 4702660 -144080812 - MLT2D LTR ERVL 0 414 160 1726 159 0 45 chr11 4702919 4703228 -144080244 - AluJb SINE Alu -9 303 9 26 0 0 0 chr11 4703654 4703680 -144079792 + AT_rich Low_complexity Low_complexity 1 26 0 2903 157 14 6 chr11 4704506 4705015 -144078457 - LTR10D LTR ERV1 0 513 1 1911 180 91 28 chr11 4705466 4705927 -144077545 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr11 4706345 4706368 -144077104 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 703 146 0 90 chr11 4706996 4707140 -144076332 + FLAM_C SINE Alu 1 131 -2 1984 119 10 35 chr11 4707209 4707519 -144075953 - AluSx SINE Alu -10 302 1 21 36 0 0 chr11 4707522 4707550 -144075922 + AT_rich Low_complexity Low_complexity 1 28 0 2305 50 16 10 chr11 4707769 4708072 -144075400 + AluY SINE Alu 1 305 -6 1698 191 91 14 chr11 4708098 4708518 -144074954 - MLT1C LTR MaLR 0 467 16 530 331 134 9 chr11 4709340 4709684 -144073788 - L2 LINE L2 -1 3312 2926 389 229 131 56 chr11 4709746 4710051 -144073421 + L1MB7 LINE L1 5850 6177 -1 256 409 0 0 chr11 4710065 4710158 -144073314 - L2 LINE L2 -319 2994 2902 2210 95 0 7 chr11 4712024 4712335 -144071137 - AluSc SINE Alu 0 309 1 1623 259 35 52 chr11 4713133 4713575 -144069897 - L1MB7 LINE L1 -104 6080 5653 2945 6 0 0 chr11 4713575 4713893 -144069579 + AluYb8 SINE Alu 1 318 0 1623 259 35 52 chr11 4713893 4714160 -144069312 - L1MB7 LINE L1 -531 5653 5383 1187 221 20 57 chr11 4714204 4714440 -144069032 - L1MB7 LINE L1 -1741 4405 4189 1748 157 40 13 chr11 4714440 4714740 -144068732 - AluSx SINE Alu -4 308 1 1187 221 20 57 chr11 4714740 4714906 -144068566 - L1MB7 LINE L1 -1957 4189 4018 270 0 0 0 chr11 4714910 4714940 -144068532 + (T)n Simple_repeat Simple_repeat 1 30 0 1577 112 65 4 chr11 4714971 4715203 -144068269 - AluSx SINE Alu -14 298 53 1628 225 27 9 chr11 4715206 4715651 -144067821 - L1MB7 LINE L1 -2156 3990 3538 433 296 27 0 chr11 4715716 4715902 -144067570 - L1MB7 LINE L1 -3317 2829 2639 315 224 10 31 chr11 4715952 4716050 -144067422 - MLT1D LTR MaLR -8 497 402 760 190 95 28 chr11 4716055 4716234 -144067238 + MLT1C LTR MaLR 276 466 -1 379 157 26 85 chr11 4716236 4716389 -144067083 - L1MCa LINE L1 -4030 2185 2042 189 153 76 7 chr11 4716459 4716603 -144066869 + (TA)n Simple_repeat Simple_repeat 1 154 0 22 48 0 48 chr11 4716620 4716682 -144066790 + AT_rich Low_complexity Low_complexity 1 59 0 284 202 31 23 chr11 4716698 4716827 -144066645 + (TA)n Simple_repeat Simple_repeat 1 130 0 825 207 103 16 chr11 4716831 4717175 -144066297 - L1MCa LINE L1 -4199 2016 1706 229 220 20 90 chr11 4717276 4717376 -144066096 - L1M4 LINE L1 -1858 4288 4196 2775 120 21 14 chr11 4717389 4717709 -144065763 - L1PA16 LINE L1 -12 6154 5829 2422 84 0 0 chr11 4717709 4718017 -144065455 - AluY SINE Alu -1 310 3 2775 120 21 14 chr11 4718017 4718128 -144065344 - L1PA16 LINE L1 -337 5829 5720 2485 112 8 3 chr11 4718128 4718512 -144064960 + L1P4 LINE L1 5292 5677 -489 729 252 14 28 chr11 4718546 4718828 -144064644 - L1M4 LINE L1 -1948 4198 3921 * 780 235 63 48 chr11 4718814 4719146 -144064326 - L1M4 LINE L1 -847 5299 4963 226 362 60 60 chr11 4719315 4719616 -144063856 + MLT1K LTR MaLR 4 304 -284 602 192 57 6 chr11 4720718 4720895 -144062577 - MER53 DNA DNA -3 186 1 2078 119 0 7 chr11 4721862 4722178 -144061294 + AluSx SINE Alu 1 314 0 21 57 0 0 chr11 4722181 4722216 -144061256 + AT_rich Low_complexity Low_complexity 1 35 0 1356 109 0 0 chr11 4723052 4723235 -144060237 - AluSp SINE Alu -11 302 120 1328 226 147 22 chr11 4724112 4724527 -144058945 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr11 4724597 4724618 -144058854 + AT_rich Low_complexity Low_complexity 1 21 0 246 355 23 17 chr11 4724780 4724952 -144058520 + MIR SINE MIR 40 212 -50 25 0 0 0 chr11 4724959 4724984 -144058488 + AT_rich Low_complexity Low_complexity 1 25 0 1455 194 126 55 chr11 4725371 4725793 -144057679 - MLT2B1 LTR ERVL 0 520 69 361 214 90 0 chr11 4725810 4725899 -144057573 - MLT2B1 LTR ERVL -416 99 3 214 205 26 0 chr11 4726006 4726084 -144057388 + (TA)n Simple_repeat Simple_repeat 2 81 0 2132 86 0 83 chr11 4726143 4726469 -144057003 - AluSq SINE Alu -14 299 1 1068 255 28 61 chr11 4727235 4727777 -144055695 - MLT1E1 LTR MaLR 0 593 23 3616 35 0 0 chr11 4728454 4728915 -144054557 - L1P LINE L1 -2802 3344 2884 * 10161 42 1 0 chr11 4728914 4730159 -144053313 + L1P LINE L1 3335 4580 -1566 3832 87 14 40 chr11 4730414 4731033 -144052439 - L1MA2 LINE L1 0 6304 5702 322 318 19 0 chr11 4731231 4731338 -144052134 + L1MC4 LINE L1 6608 6716 -1326 1440 254 42 26 chr11 4731479 4731909 -144051563 + L1MB5 LINE L1 5690 6126 -48 2829 104 42 82 chr11 4731920 4732496 -144050976 - L1MA1 LINE L1 0 6302 5750 786 50 0 20 chr11 4732498 4732599 -144050873 + L1MA1 LINE L1 5651 5749 -553 261 186 0 14 chr11 4732599 4732669 -144050803 + L1MB3 LINE L1 6115 6183 0 459 324 7 0 chr11 4732794 4732933 -144050539 - Charlie1 DNA MER1_type -2621 140 1 2328 107 0 3 chr11 4733361 4733669 -144049803 - AluSq SINE Alu -6 307 1 236 210 16 0 chr11 4734586 4734648 -144048824 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 1156 155 117 29 chr11 4734974 4735213 -144048259 - L1MA4 LINE L1 -388 5912 5653 2062 159 26 5 chr11 4735214 4735603 -144047869 + L1MA4 LINE L1 5899 6295 -5 236 372 53 21 chr11 4737111 4737299 -144046173 - MIR SINE MIR -13 249 56 282 287 70 17 chr11 4737468 4737583 -144045889 + MIR SINE MIR 53 173 -89 953 202 33 24 chr11 4738730 4739061 -144044411 + L1MA9 LINE L1 3125 3458 -2688 * 1161 166 5 0 chr11 4739036 4739247 -144044225 + L1MA9 LINE L1 4803 5014 -1132 27 0 0 0 chr11 4740525 4740552 -144042920 + AT_rich Low_complexity Low_complexity 1 27 0 2019 118 14 0 chr11 4742860 4743157 -144040315 + AluSx SINE Alu 1 301 -11 1699 199 37 20 chr11 4743352 4743754 -144039718 + L1MA9 LINE L1 5743 6151 -161 34 24 0 0 chr11 4743920 4743961 -144039511 + AT_rich Low_complexity Low_complexity 1 41 0 2070 89 40 6 chr11 4743965 4744290 -144039182 - L1MA1 LINE L1 0 6302 5967 1069 292 18 12 chr11 4745179 4745511 -144037961 + L1M4 LINE L1 361 694 -5848 1374 214 37 29 chr11 4745659 4746010 -144037462 + L1M4 LINE L1 4477 4830 -1814 1312 274 19 7 chr11 4746015 4746445 -144037027 + L1M4 LINE L1 4965 5399 -1245 264 108 0 0 chr11 4746457 4746494 -144036978 + L1MA7 LINE L1 6072 6108 -183 * 7392 258 18 6 chr11 4746479 4748578 -144034894 - L1 LINE L1 -1810 4336 2213 2785 206 186 12 chr11 4748577 4749467 -144034005 + L1 LINE L1 4307 5351 -795 * 661 44 2 1 chr11 4749567 4749657 -144033815 - L1MC/D LINE L1 -356 5799 5707 392 245 27 27 chr11 4750191 4750338 -144033134 - L1ME LINE L1 -381 5789 5643 23 0 0 0 chr11 4752357 4752380 -144031092 + AT_rich Low_complexity Low_complexity 1 23 0 1143 176 42 0 chr11 4753600 4753866 -144029606 - L1ME LINE L1 -743 5403 5164 1110 86 0 6 chr11 4753873 4754035 -144029437 + L1PA12 LINE L1 6008 6168 0 301 289 74 33 chr11 4754667 4754909 -144028563 - L1ME LINE L1 -1818 4328 4077 25 0 0 0 chr11 4755049 4755074 -144028398 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 53 30 chr11 4755074 4755138 -144028334 + L1M4 LINE L1 4323 4384 -1762 5745 25 1 6 chr11 4755138 4755860 -144027612 + L1PA4 LINE L1 5463 6181 0 289 269 53 30 chr11 4755860 4756058 -144027414 + L1M4 LINE L1 4384 4592 -1554 310 356 56 0 chr11 4756150 4756310 -144027162 + L1M4 LINE L1 4698 4866 -1280 474 259 0 0 chr11 4756447 4756555 -144026917 + L1M2a LINE L1 8 115 -7053 3837 184 45 21 chr11 4756564 4757654 -144025818 + L1M2a LINE L1 1524 2655 -4513 382 378 22 6 chr11 4757728 4757908 -144025564 - L2 LINE L2 -2926 388 206 216 211 19 0 chr11 4759809 4759861 -144023611 + CT-rich Low_complexity Low_complexity 2 54 0 259 283 106 35 chr11 4760601 4760799 -144022673 - MIR SINE MIR 0 262 51 268 141 14 14 chr11 4761824 4761895 -144021577 + CT-rich Low_complexity Low_complexity 2 72 0 859 245 102 32 chr11 4762634 4763079 -144020393 - Charlie1b DNA MER1_type -44 479 6 3189 68 13 44 chr11 4764949 4765353 -144018119 + MLT2A1 LTR ERVL 1 391 -53 225 0 0 0 chr11 4765353 4765378 -144018094 + (CA)n Simple_repeat Simple_repeat 2 26 0 3189 68 13 44 chr11 4765378 4765431 -144018041 + MLT2A1 LTR ERVL 391 444 0 206 363 55 11 chr11 4766165 4766256 -144017216 - MIR3 SINE MIR -3 205 111 2874 149 114 5 chr11 4766997 4767568 -144015904 - LTR24C LTR ERV1 0 635 3 1125 240 10 13 chr11 4768019 4768306 -144015166 - L1P3 LINE L1 -561 5611 5322 260 260 39 13 chr11 4768471 4768548 -144014924 + Tigger5 DNA MER2_type 1 79 -2244 1409 67 0 10 chr11 4768878 4769072 -144014400 + L1M1 LINE L1 5625 5816 -486 371 180 0 0 chr11 4769072 4769133 -144014339 + Tigger5 DNA MER2_type 2262 2322 -1 27 49 0 0 chr11 4770560 4770601 -144012871 + AT_rich Low_complexity Low_complexity 1 41 0 1294 112 28 28 chr11 4770605 4770702 -144012770 - L1PA16 LINE L1 -9 6157 6061 1661 143 62 54 chr11 4770702 4771074 -144012398 + THE1C LTR MaLR 1 375 0 1294 112 28 28 chr11 4771074 4771190 -144012282 - L1PA16 LINE L1 -104 6062 5944 199 309 15 15 chr11 4771703 4771771 -144011701 - MIR SINE MIR -63 145 78 580 306 53 51 chr11 4772807 4773202 -144010270 + LTR16A1 LTR ERVL 62 457 0 932 211 22 0 chr11 4773353 4773538 -144009934 - MER5A DNA MER1_type 0 189 1 1001 246 0 5 chr11 4773898 4774113 -144009359 - MER58A DNA MER1_type 0 224 11 1871 151 47 0 chr11 4774927 4775225 -144008247 + AluSx SINE Alu 1 312 0 1895 81 0 67 chr11 4775302 4775585 -144007887 + AluY SINE Alu 36 299 -12 265 252 87 26 chr11 4775972 4776087 -144007385 + MIR SINE MIR 113 234 -28 4489 184 27 30 chr11 4776282 4777022 -144006450 - L1PA16 LINE L1 -16 6150 5409 1725 180 14 0 chr11 4777022 4777305 -144006167 - AluJb SINE Alu -25 287 1 4489 184 27 30 chr11 4777305 4778442 -144005030 - L1PA16 LINE L1 -757 5409 4285 25 0 0 0 chr11 4779351 4779376 -144004096 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 4779522 4779550 -144003922 + (CA)n Simple_repeat Simple_repeat 2 29 0 3548 212 14 16 chr11 4781419 4782715 -144000757 + L1MB3 LINE L1 4498 5787 -396 322 173 12 25 chr11 4782717 4782798 -144000674 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2078 162 15 8 chr11 4782802 4783197 -144000275 + L1MB3 LINE L1 5786 6183 0 1623 152 82 0 chr11 4783382 4783652 -143999820 - AluSg SINE Alu -18 292 1 406 293 75 40 chr11 4784543 4785065 -143998407 + L1ME4a LINE L1 5582 6121 0 300 164 119 0 chr11 4788225 4788292 -143995180 + L1PA15 LINE L1 6089 6163 -2 267 255 39 20 chr11 4788568 4788670 -143994802 - Charlie8 DNA MER1_type -2220 197 94 765 250 59 0 chr11 4788758 4788962 -143994510 + L1PA16 LINE L1 5951 6166 0 22 0 0 0 chr11 4789034 4789056 -143994416 + AT_rich Low_complexity Low_complexity 1 22 0 305 339 35 29 chr11 4789359 4789530 -143993942 + MIR SINE MIR 91 262 0 1849 171 3 7 chr11 4789640 4789944 -143993528 - AluSx SINE Alu -9 303 1 197 348 22 11 chr11 4790398 4790487 -143992985 - L2 LINE L2 -449 2865 2776 324 48 0 0 chr11 4790804 4790846 -143992626 + (CA)n Simple_repeat Simple_repeat 1 42 0 684 220 28 98 chr11 4790920 4791134 -143992338 - MIR SINE MIR -62 200 2 2277 91 109 0 chr11 4791288 4791628 -143991844 + MER51B LTR ERV1 1 377 0 26 0 0 0 chr11 4791933 4791959 -143991513 + AT_rich Low_complexity Low_complexity 1 26 0 1847 145 19 26 chr11 4792016 4792181 -143991291 + AluSx SINE Alu 1 166 -146 2263 142 28 14 chr11 4792181 4792540 -143990932 + THE1B LTR MaLR 1 364 0 11646 87 10 3 chr11 4792540 4794108 -143989364 + THE1B-int LTR MaLR 1 1580 0 2315 124 42 14 chr11 4794108 4794462 -143989010 + THE1B LTR MaLR 1 364 0 1847 145 19 26 chr11 4794462 4794604 -143988868 + AluSx SINE Alu 163 308 -4 200 400 0 0 chr11 4794746 4794826 -143988646 - L2 LINE L2 -246 3067 2988 2362 172 24 11 chr11 4794917 4795382 -143988090 - L1MA8 LINE L1 -347 5944 5474 209 192 39 0 chr11 4795923 4795975 -143987497 + A-rich Low_complexity Low_complexity 5 58 0 4840 31 0 3 chr11 4796363 4796941 -143986531 + L1PA4 LINE L1 5580 6155 0 412 75 0 0 chr11 4796942 4796995 -143986477 + L1PA10 LINE L1 5818 5870 -298 22 0 0 0 chr11 4796995 4797017 -143986455 + AT_rich Low_complexity Low_complexity 1 22 0 783 117 0 66 chr11 4797281 4797418 -143986054 - MER1B DNA MER1_type 0 339 212 3618 107 15 0 chr11 4797428 4798035 -143985437 - L1PBa LINE L1 -5015 1848 1085 3926 148 96 3 chr11 4798052 4798796 -143984676 - L1PBa LINE L1 -5739 1124 160 3726 191 19 0 chr11 4798796 4799551 -143983921 + L1MA7 LINE L1 5523 6291 0 1194 187 0 35 chr11 4799716 4799946 -143983526 - AluJb SINE Alu -12 300 79 267 404 40 27 chr11 4799984 4800268 -143983204 - L2 LINE L2 -285 2987 2702 507 232 63 7 chr11 4800555 4800697 -143982775 - L1MA10 LINE L1 -10 6324 6175 31 44 0 0 chr11 4800700 4800745 -143982727 + AT_rich Low_complexity Low_complexity 1 45 0 478 265 15 22 chr11 4800751 4800887 -143982585 + MLT1F1 LTR MaLR 1 135 -407 1312 285 9 6 chr11 4800887 4801210 -143982262 + L1M3c LINE L1 7 330 -5811 493 248 9 0 chr11 4801208 4801317 -143982155 - L1M3c LINE L1 -5695 446 337 * 1627 148 45 7 chr11 4801318 4801481 -143981991 + L1MA9 LINE L1 5987 6142 -170 180 77 0 0 chr11 4801481 4801507 -143981965 + (CA)n Simple_repeat Simple_repeat 2 27 0 1627 148 45 7 chr11 4801507 4801653 -143981819 + L1MA9 LINE L1 6142 6308 -4 786 287 31 11 chr11 4801825 4802086 -143981386 + MLT1F1 LTR MaLR 302 567 0 3488 38 2 29 chr11 4802248 4802701 -143980771 - L1PA6 LINE L1 -6 6148 5708 1403 69 0 0 chr11 4802701 4802876 -143980596 + L1PA6 LINE L1 5544 5718 -436 * 6348 199 9 4 chr11 4802860 4804140 -143979332 - L1PA15-16 LINE L1 -1586 5263 3977 3789 246 16 19 chr11 4804137 4805399 -143978073 - L1PA15-16 LINE L1 -3684 3165 1895 * 480 18 0 0 chr11 4805402 4805459 -143978013 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2220 153 42 83 chr11 4805549 4805645 -143977827 + L1MA4 LINE L1 5762 5860 -440 1895 122 46 20 chr11 4805645 4805949 -143977523 + AluSx SINE Alu 1 312 0 2220 153 42 83 chr11 4805949 4806406 -143977066 + L1MA4 LINE L1 5860 6292 -8 216 97 0 0 chr11 4806766 4806797 -143976675 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 4807512 4807533 -143975939 + AT_rich Low_complexity Low_complexity 1 21 0 3171 90 0 0 chr11 4809167 4809599 -143973873 - L1PA7 LINE L1 0 6154 5723 325 55 68 0 chr11 4810842 4810915 -143972557 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 0 0 0 chr11 4810921 4810944 -143972528 + AT_rich Low_complexity Low_complexity 1 23 0 324 133 36 0 chr11 4812320 4812403 -143971069 + CT-rich Low_complexity Low_complexity 2 87 0 801 357 65 15 chr11 4812601 4813077 -143970395 + L2 LINE L2 2814 3313 0 310 315 79 43 chr11 4813370 4813675 -143969797 + L1M4 LINE L1 2963 3278 -2868 2118 20 0 0 chr11 4813686 4813932 -143969540 - L1PA4 LINE L1 -5 6150 5905 242 237 151 0 chr11 4814240 4814333 -143969139 - MLT1E LTR MaLR -167 400 294 198 0 0 0 chr11 4814347 4814369 -143969103 + (T)n Simple_repeat Simple_repeat 1 22 0 231 94 0 0 chr11 4814452 4814484 -143968988 - L1P LINE L1 -728 5426 5395 2915 62 20 20 chr11 4814484 4814888 -143968584 + L1PA8 LINE L1 5769 6172 0 506 285 13 7 chr11 4814925 4815076 -143968396 - MLT1E LTR MaLR -439 154 3 471 274 85 33 chr11 4815077 4815347 -143968125 + L1ME3A LINE L1 5721 6004 -166 1017 241 133 22 chr11 4815379 4815703 -143967769 - MLT2B1 LTR ERVL -158 362 3 301 322 41 16 chr11 4815707 4815828 -143967644 + L1ME3A LINE L1 6043 6166 -4 218 175 48 0 chr11 4816123 4816186 -143967286 + (AATAG)n Simple_repeat Simple_repeat 4 69 0 5049 179 18 12 chr11 4817017 4818834 -143964638 - L1PB4 LINE L1 -8 6148 4315 21 36 0 0 chr11 4818839 4818867 -143964605 + AT_rich Low_complexity Low_complexity 1 28 0 2716 159 11 0 chr11 4818902 4819360 -143964112 - L1PA16 LINE L1 -105 6061 5599 * 3978 193 30 68 chr11 4819356 4820842 -143962630 + L1PA16 LINE L1 4186 5600 -566 2269 218 19 0 chr11 4820839 4821353 -143962119 - L1PB4 LINE L1 -1818 4328 3805 * 202 395 35 0 chr11 4823069 4823183 -143960289 + MIR SINE MIR 67 184 -78 189 0 0 0 chr11 4825903 4825924 -143957548 + (GA)n Simple_repeat Simple_repeat 2 22 0 2712 140 39 16 chr11 4827065 4827552 -143955920 + L1PA16 LINE L1 5660 6157 -9 278 54 0 0 chr11 4827554 4827591 -143955881 + L1MA6 LINE L1 6112 6148 -152 12353 33 0 0 chr11 4827601 4829839 -143953633 - L1PA4 LINE L1 -3 6152 3914 683 170 14 0 chr11 4829839 4829978 -143953494 + L1MA6 LINE L1 6154 6296 -4 3704 195 38 55 chr11 4829987 4830049 -143953423 + L1MB5 LINE L1 4900 4962 -1212 2129 122 3 3 chr11 4830049 4830343 -143953129 + AluSc SINE Alu 6 299 -10 3704 195 38 55 chr11 4830343 4831036 -143952436 + L1MB5 LINE L1 4962 5627 -547 2176 96 6 16 chr11 4831036 4831350 -143952122 + AluY SINE Alu 1 311 0 3704 195 38 55 chr11 4831350 4831873 -143951599 + L1MB5 LINE L1 5627 6157 -17 1322 237 95 94 chr11 4832397 4832942 -143950530 + MER77 LTR ERV1 54 599 -6 273 313 102 0 chr11 4833192 4833358 -143950114 - L1M4 LINE L1 -1307 4839 4657 421 321 57 24 chr11 4833462 4833671 -143949801 + MIR SINE MIR 47 262 0 182 219 16 0 chr11 4835080 4835144 -143948328 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 139 25 13 chr11 4835667 4835746 -143947726 + C-rich Low_complexity Low_complexity 4 83 0 646 126 0 0 chr11 4835847 4835950 -143947522 - L1 LINE L1 -1565 4581 4479 520 265 36 14 chr11 4835984 4836207 -143947265 - L1M4 LINE L1 -1349 4797 4570 12106 148 45 10 chr11 4836207 4836921 -143946551 + Tigger1 DNA MER2_type 252 939 -1479 333 0 0 0 chr11 4836921 4836958 -143946514 + (TC)n Simple_repeat Simple_repeat 2 38 0 297 109 0 0 chr11 4836957 4837012 -143946460 + (TA)n Simple_repeat Simple_repeat 2 56 0 * 12106 148 45 10 chr11 4836958 4837012 -143946460 + Tigger1 DNA MER2_type 939 990 -1428 2014 129 3 3 chr11 4837012 4837298 -143946174 - AluSq SINE Alu -27 286 1 12106 148 45 10 chr11 4837298 4838675 -143944797 + Tigger1 DNA MER2_type 990 2418 0 218 326 123 36 chr11 4840183 4840321 -143943151 + L3 LINE CR1 1304 1453 -124 1068 108 30 0 chr11 4840338 4840504 -143942968 + L1PA13 LINE L1 5993 6163 0 398 397 39 0 chr11 4840974 4841231 -143942241 - L2 LINE L2 -339 2975 2709 351 0 0 0 chr11 4841560 4841599 -143941873 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr11 4841598 4841621 -143941851 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 210 143 0 0 chr11 4841765 4841800 -143941672 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 444 182 26 0 chr11 4844502 4844579 -143938893 - MER2 DNA MER2_type 0 345 267 1125 173 20 10 chr11 4844605 4844807 -143938665 - MER2 DNA MER2_type -135 210 7 207 358 32 0 chr11 4845376 4845471 -143938001 - MIR SINE MIR -51 211 114 354 186 44 9 chr11 4845848 4845961 -143937511 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1306 228 140 33 chr11 4846635 4847137 -143936335 - LTR10B LTR ERV1 -3 544 1 5640 263 9 7 chr11 4847141 4848510 -143934962 - HERVI LTR ERV1 -2 7783 6412 1604 219 19 17 chr11 4848858 4849219 -143934253 - HERVI LTR ERV1 -3737 3159 2798 622 198 9 0 chr11 4849190 4849306 -143934166 - HERVI LTR ERV1 -2164 4485 4369 * 299 211 33 78 chr11 4849326 4849416 -143934056 - HERVI LTR ERV1 -2369 5416 5331 * 337 237 31 41 chr11 4849385 4849482 -143933990 - HERVI LTR ERV1 -2858 4927 4832 951 177 74 5 chr11 4849512 4849778 -143933694 - HERVI LTR ERV1 -3146 4639 4325 464 276 55 7 chr11 4849840 4849985 -143933487 - HERVI LTR ERV1 -3485 3164 3013 2594 197 50 68 chr11 4850568 4851644 -143931828 - HERVI LTR ERV1 -6786 999 3 947 194 172 95 chr11 4851666 4852171 -143931301 - LTR10B LTR ERV1 -3 544 1 817 102 8 0 chr11 4852295 4852413 -143931059 - L1P LINE L1 -3161 2985 2867 42 20 0 0 chr11 4853571 4853620 -143929852 + AT_rich Low_complexity Low_complexity 1 49 0 5880 221 94 44 chr11 4853664 4854493 -143928979 + L1MDa LINE L1 2937 3724 -3841 1780 88 0 24 chr11 4854493 4854742 -143928730 + L1PA8A LINE L1 5882 6124 -7 2495 62 0 3 chr11 4854743 4855047 -143928425 + AluY SINE Alu 1 303 -8 5880 221 94 44 chr11 4855047 4856953 -143926519 + L1MDa LINE L1 3723 5839 -1726 23 54 0 0 chr11 4857876 4857913 -143925559 + AT_rich Low_complexity Low_complexity 1 37 0 229 250 25 0 chr11 4859336 4859416 -143924056 + L1MC4 LINE L1 6620 6701 -1341 14080 159 45 8 chr11 4859430 4863845 -143919627 - L1PB1 LINE L1 0 6867 2619 204 67 0 0 chr11 4863845 4863875 -143919597 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 1797 141 30 0 chr11 4863875 4864144 -143919328 - AluSx SINE Alu -35 277 1 14080 159 45 8 chr11 4864144 4865752 -143917720 - L1PB1 LINE L1 -4247 2620 620 803 169 14 0 chr11 4865732 4865880 -143917592 - L1PB1 LINE L1 -6663 200 51 * 452 225 50 6 chr11 4865987 4866169 -143917303 - L1M4 LINE L1 -2929 3217 3028 761 203 0 0 chr11 4866192 4866335 -143917137 - MSTD-int LTR MaLR -1589 146 4 1977 155 58 56 chr11 4866337 4866730 -143916742 - MSTD LTR MaLR -2 394 1 1131 44 0 0 chr11 4867275 4867412 -143916060 + L1PA3 LINE L1 6016 6152 -3 498 322 52 17 chr11 4868182 4868415 -143915057 - MIR SINE MIR -10 252 12 384 245 19 10 chr11 4868523 4868636 -143914836 - LTR67 LTR ERVL -4 553 440 31100 54 37 3 chr11 4869324 4873280 -143910192 + L1P LINE L1 13 4103 -2043 401 230 11 0 chr11 4873286 4873373 -143910099 + LTR26 LTR ERV1 516 603 0 684 314 14 35 chr11 4873395 4873682 -143909790 + L1ME LINE L1 188 468 -5602 606 94 24 0 chr11 4873685 4873770 -143909702 + L1P LINE L1 12 98 -6048 * 6745 66 2 19 chr11 4873764 4874652 -143908820 + L1P LINE L1 617 1489 -4657 10917 24 0 1 chr11 4874652 4876689 -143906783 + L1PA4 LINE L1 4114 6153 -2 1071 304 24 28 chr11 4876695 4877235 -143906237 + L1ME LINE L1 456 993 -5077 * 13786 162 75 26 chr11 4877224 4879786 -143903686 + L1M1 LINE L1 27 2713 -4852 5091 123 7 8 chr11 4880249 4881463 -143902009 + L1PA11 LINE L1 4745 5954 -220 1411 231 119 22 chr11 4882428 4882974 -143900498 - Zaphod DNA AcHobo -241 3790 3192 298 268 55 88 chr11 4884236 4884508 -143898964 + HERVFH21 LTR ERV1 1366 1628 -6629 937 283 57 56 chr11 4884694 4885721 -143897751 + HERVFH21 LTR ERV1 885 1923 -4731 2308 293 60 62 chr11 4885758 4888228 -143895244 + HERVFH21 LTR ERV1 1765 4940 -2348 335 126 27 35 chr11 4888677 4888750 -143894722 + HERVFH21 LTR ERV1 4614 4783 -1746 206 179 51 64 chr11 4888760 4888838 -143894634 + L2 LINE L2 2997 3073 -199 1042 80 7 7 chr11 4888870 4889007 -143894465 + AluSp SINE Alu 1 137 -176 9524 51 121 14 chr11 4889010 4890256 -143893216 + SVA Other Other 7 1386 0 702 285 63 59 chr11 4890257 4890782 -143892690 + HERVFH21 LTR ERV1 4686 5322 -1207 451 234 49 40 chr11 4892450 4892637 -143890835 + HERVFH21 LTR ERV1 4202 7147 -245 291 208 39 0 chr11 4892861 4892938 -143890534 + HERVFH21 LTR ERV1 6446 6525 -4 488 270 56 113 chr11 4895025 4895539 -143887933 - MLT1G LTR MaLR -42 548 64 1687 285 31 34 chr11 4895650 4896233 -143887239 + L1MEc LINE L1 39 619 -5777 577 227 78 17 chr11 4898611 4898790 -143884682 + L1P LINE L1 4254 4441 -1705 2266 99 0 29 chr11 4900299 4900612 -143882860 + AluSc SINE Alu 1 304 -5 293 97 16 97 chr11 4900902 4900964 -143882508 - U2 snRNA snRNA -131 57 1 203 167 0 21 chr11 4903823 4903871 -143879601 + CT-rich Low_complexity Low_complexity 2 48 0 202 200 0 0 chr11 4904415 4904455 -143879017 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 201 23 10 chr11 4905574 4905884 -143877588 - MER33 DNA MER1_type -22 302 1 183 100 0 0 chr11 4906580 4906610 -143876862 + (TTTTTA)n Simple_repeat Simple_repeat 3 32 0 206 206 44 0 chr11 4906619 4906687 -143876785 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 * 215 187 53 41 chr11 4906651 4906822 -143876650 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 505 94 9 113 chr11 4910355 4910461 -143873011 + LTR7 LTR ERV1 354 448 -2 14947 80 8 115 chr11 4910463 4913034 -143870438 + HERVH LTR ERV1 1 2297 -5416 1454 214 30 12 chr11 4913138 4913564 -143869908 - L1M4 LINE L1 -2976 3170 2737 552 263 234 24 chr11 4917339 4917719 -143865753 - LTR50 LTR ERVL -335 460 1 206 333 74 19 chr11 4920236 4920344 -143863128 - MIR SINE MIR -109 153 40 26 0 0 0 chr11 4920905 4920931 -143862541 + AT_rich Low_complexity Low_complexity 1 26 0 327 26 0 0 chr11 4921973 4922012 -143861460 - L1PA16 LINE L1 -5 6161 6123 5015 154 11 4 chr11 4922136 4922948 -143860524 - L1PA16 LINE L1 -41 6125 5308 22 56 0 0 chr11 4923233 4923269 -143860203 + AT_rich Low_complexity Low_complexity 1 36 0 218 347 54 27 chr11 4923349 4923496 -143859976 - L2 LINE L2 0 3272 3122 244 298 64 86 chr11 4924351 4924817 -143858655 + L1MEc LINE L1 333 788 -5608 2024 156 3 6 chr11 4924825 4925153 -143858319 - MER50 LTR ERV1 -24 710 384 349 73 91 0 chr11 4925266 4925321 -143858151 + L1PA15 LINE L1 6106 6165 0 21 0 0 0 chr11 4926169 4926190 -143857282 + AT_rich Low_complexity Low_complexity 1 21 0 761 124 16 47 chr11 4926326 4926455 -143857017 + LTR8 LTR ERV1 567 691 0 8397 101 15 52 chr11 4926455 4927752 -143855720 + HUERS-P1 LTR ERV1 1 1250 -5013 8874 123 25 56 chr11 4927795 4929341 -143854131 + HUERS-P1 LTR ERV1 1215 2711 -3552 295 319 30 21 chr11 4929341 4929576 -143853896 - L1M4 LINE L1 -2461 3685 3449 1418 262 42 39 chr11 4929780 4930212 -143853260 - L1MEc LINE L1 -5928 468 36 2187 124 0 0 chr11 4930342 4930641 -143852831 + AluSp SINE Alu 1 299 -14 1990 128 59 0 chr11 4931733 4932022 -143851450 - AluSg SINE Alu -4 306 1 215 340 71 29 chr11 4932962 4933200 -143850272 - L2 LINE L2 -1035 2279 2032 241 259 62 25 chr11 4933227 4933308 -143850164 - L2 LINE L2 -1363 1951 1868 2138 135 0 3 chr11 4933737 4934033 -143849439 - AluSx SINE Alu -17 295 1 1328 131 0 15 chr11 4934934 4935133 -143848339 - AluSq SINE Alu -117 196 1 267 333 16 24 chr11 4935243 4935366 -143848106 - L2 LINE L2 -2 3311 3190 229 390 39 0 chr11 4935456 4935533 -143847939 + L2 LINE L2 3149 3228 -44 292 350 42 8 chr11 4935668 4935788 -143847684 - L2 LINE L2 -2068 1246 1123 854 288 141 30 chr11 4935791 4936260 -143847212 + LTR33 LTR ERVL 1 521 0 803 228 25 30 chr11 4936477 4936679 -143846793 + MIR SINE MIR 41 241 -21 228 241 0 0 chr11 4937163 4937221 -143846251 + GA-rich Low_complexity Low_complexity 3 60 0 253 271 14 14 chr11 4937225 4937295 -143846177 + L1MEd LINE L1 460 529 -5590 202 273 131 10 chr11 4939790 4939889 -143843583 + L3b LINE CR1 1268 1378 -205 384 357 151 24 chr11 4940054 4940797 -143842675 + L2 LINE L2 1938 2774 -540 23 54 0 0 chr11 4941357 4941394 -143842078 + AT_rich Low_complexity Low_complexity 1 37 0 379 96 0 0 chr11 4941509 4941561 -143841911 - MADE1 DNA Mariner 0 80 29 5950 130 19 9 chr11 4942320 4943885 -143839587 - L1MA1 LINE L1 -127 6175 4589 2417 163 25 83 chr11 4944422 4944672 -143838800 - MER66B LTR ERV1 0 486 280 2125 128 0 7 chr11 4944672 4944976 -143838496 - AluSx SINE Alu -10 302 1 2417 163 25 83 chr11 4944976 4945241 -143838231 - MER66B LTR ERV1 -206 280 1 300 152 0 0 chr11 4946075 4946121 -143837351 + HERVK11 LTR ERVK 6722 6767 -1186 * 453 167 10 31 chr11 4946112 4946208 -143837264 + HERVK11 LTR ERVK 6963 7056 -897 * 2772 63 0 0 chr11 4946165 4946497 -143836975 - HERVK11 LTR ERVK -4731 3222 2891 * 3158 87 52 0 chr11 4946483 4946909 -143836563 - HERVK11 LTR ERVK -6341 1612 1165 2323 118 24 9 chr11 4946884 4947479 -143835993 - HERVK11 LTR ERVK -7081 872 206 * 2372 113 3 0 chr11 4947474 4947794 -143835678 - HERVK11 LTR ERVK -7632 321 1 5640 153 40 53 chr11 4947794 4948880 -143834592 - MER11C LTR ERVK 0 1071 1 2033 56 4 8 chr11 4949050 4949316 -143834156 + LTR7 LTR ERV1 1 265 -185 1860 111 15 19 chr11 4949714 4949976 -143833496 + AluSg SINE Alu 37 297 -13 22 56 0 0 chr11 4950174 4950210 -143833262 + AT_rich Low_complexity Low_complexity 1 36 0 217 328 86 9 chr11 4950680 4950796 -143832676 + MIR SINE MIR 57 181 -81 1771 219 19 32 chr11 4951171 4951541 -143831931 - MLT1A1 LTR MaLR 0 365 1 1813 200 42 12 chr11 4952774 4953188 -143830284 + L1MA9 LINE L1 5856 6282 -30 193 151 38 19 chr11 4953195 4953248 -143830224 + GA-rich Low_complexity Low_complexity 3 56 0 408 269 43 14 chr11 4954147 4954288 -143829184 + MIR SINE MIR 45 189 -73 238 311 59 0 chr11 4954481 4954616 -143828856 - MIR SINE MIR -1 261 119 573 157 38 22 chr11 4954623 4954740 -143828732 + MLT1C LTR MaLR 1 106 -361 463 251 165 75 chr11 4955353 4955898 -143827574 - L1MEd LINE L1 -4862 1257 664 1394 233 24 68 chr11 4955927 4956309 -143827163 + MLT1A1 LTR MaLR 1 365 0 246 136 0 0 chr11 4956425 4956469 -143827003 + (TG)n Simple_repeat Simple_repeat 1 44 0 376 106 30 15 chr11 4956583 4956649 -143826823 + Tigger3(Golem) DNA MER2_type 2431 2497 -532 198 103 0 0 chr11 4956804 4956833 -143826639 + (TA)n Simple_repeat Simple_repeat 2 30 0 5305 186 154 107 chr11 4957195 4958865 -143824607 - MER52A LTR ERV1 0 1755 7 1823 290 56 23 chr11 4959193 4959837 -143823635 + L1M2b LINE L1 1163 1827 -5382 1820 205 44 0 chr11 4959838 4960180 -143823292 + MSTA LTR MaLR 1 357 -71 608 355 12 0 chr11 4960180 4960425 -143823047 + MSTA-int LTR MaLR 8 255 -1396 3821 193 44 31 chr11 4960525 4961322 -143822150 + MLT1A1-int LTR MaLR 49 855 -796 3271 174 61 2 chr11 4961320 4961894 -143821578 + MLT1A1-int LTR MaLR 1044 1651 0 * 2583 157 36 2 chr11 4961894 4962307 -143821165 + MSTA LTR MaLR 1 427 -1 4980 161 11 41 chr11 4962310 4962910 -143820562 + L1M2 LINE L1 1478 2036 -4813 913 128 0 0 chr11 4962910 4963027 -143820445 + 5S rRNA rRNA 1 117 -4 4980 161 11 41 chr11 4963027 4963460 -143820012 + L1M2 LINE L1 2036 2480 -4369 748 100 10 0 chr11 4963460 4963560 -143819912 - MSTA LTR MaLR -319 109 9 6893 203 47 16 chr11 4963560 4965304 -143818168 + L1M2 LINE L1 2767 4565 -2283 1541 157 7 54 chr11 4965304 4965598 -143817874 - THE1B LTR MaLR 0 364 85 241 296 61 41 chr11 4966239 4966337 -143817135 + L2 LINE L2 3169 3268 -4 21 0 0 0 chr11 4966351 4966372 -143817100 + AT_rich Low_complexity Low_complexity 1 21 0 753 333 40 50 chr11 4968281 4968684 -143814788 + LTR16A LTR ERVL 52 450 0 22 56 0 0 chr11 4969017 4969053 -143814419 + AT_rich Low_complexity Low_complexity 1 36 0 182 253 287 0 chr11 4969424 4969511 -143813961 - L2 LINE L2 -493 2821 2710 378 337 139 34 chr11 4969613 4969881 -143813591 - L2 LINE L2 -2503 811 490 180 111 0 0 chr11 4969881 4969908 -143813564 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 378 337 139 34 chr11 4969908 4970019 -143813453 - L2 LINE L2 -2824 490 392 209 252 34 101 chr11 4970036 4970155 -143813317 + MIR SINE MIR 136 246 -16 210 279 118 0 chr11 4970566 4970634 -143812838 - L2 LINE L2 0 3313 3238 32 26 0 0 chr11 4970679 4970718 -143812754 + AT_rich Low_complexity Low_complexity 1 39 0 205 282 59 24 chr11 4973004 4973089 -143810383 + MIR SINE MIR 17 104 -104 256 376 43 0 chr11 4973692 4973809 -143809663 - MIR3 SINE MIR -53 155 34 416 303 32 27 chr11 4974362 4974534 -143808938 + MIR SINE MIR 34 206 -56 3484 60 0 9 chr11 4974780 4975232 -143808240 - LTR7 LTR ERV1 -2 448 1 2261 88 48 13 chr11 4975232 4975607 -143807865 - HERVH LTR ERV1 0 7713 7326 1343 120 18 5 chr11 4975609 4975826 -143807646 - HERVH LTR ERV1 -1894 5819 5600 4001 153 1 1 chr11 4975827 4976489 -143806983 - HERVH LTR ERV1 -2564 5149 4488 2774 124 7 2 chr11 4976491 4976950 -143806522 - HERVH LTR ERV1 -3720 3993 3533 271 352 62 14 chr11 4977057 4977202 -143806270 + MIR SINE MIR 100 251 -11 5542 37 0 4 chr11 4979732 4980407 -143803065 - L1PA4 LINE L1 0 6155 5484 210 143 0 0 chr11 4984112 4984147 -143799325 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 694 110 22 52 chr11 4984147 4984283 -143799189 - L1MA8 LINE L1 -507 5793 5662 1974 174 28 24 chr11 4984295 4984755 -143798717 + L1MA8 LINE L1 5825 6286 -5 555 249 52 29 chr11 4984977 4985150 -143798322 + MER33 DNA MER1_type 5 181 -143 505 179 62 0 chr11 4986551 4986696 -143796776 + MER33 DNA MER1_type 160 313 -11 282 329 174 18 chr11 4986956 4987175 -143796297 + L2 LINE L2 2595 2847 -467 626 369 47 8 chr11 4987809 4988172 -143795300 - LTR16A LTR ERVL -22 428 52 205 327 59 40 chr11 4990138 4990239 -143793233 - L2 LINE L2 -1 3271 3169 930 142 7 13 chr11 4990589 4990744 -143792728 - L1PB3 LINE L1 -17 6137 5984 22 35 0 0 chr11 4991191 4991220 -143792252 + AT_rich Low_complexity Low_complexity 1 29 0 328 353 107 0 chr11 4991243 4991430 -143792042 - MIR SINE MIR -55 207 1 382 335 110 40 chr11 4991836 4992389 -143791083 - L2 LINE L2 -540 2774 2183 226 294 71 53 chr11 4992775 4992945 -143790527 + L2 LINE L2 1868 2040 -1274 363 380 89 17 chr11 4993566 4994082 -143789390 - L2 LINE L2 -1618 1696 1144 395 224 174 12 chr11 4997212 4997373 -143786099 + MLT1J LTR MaLR 283 469 -42 711 183 57 22 chr11 4998275 4998505 -143784967 + L1M4 LINE L1 2789 3026 -3120 2478 283 44 37 chr11 4998617 4999529 -143783943 + L1PA15 LINE L1 1 918 -5869 7238 242 28 5 chr11 4999537 5002572 -143780900 + L1PA15 LINE L1 1277 4396 -2401 6473 212 11 3 chr11 5002992 5005366 -143778106 + L1PA15 LINE L1 4431 6812 -4 470 233 39 22 chr11 5005369 5005601 -143777871 + L1M4 LINE L1 3140 3375 -2771 310 269 0 58 chr11 5005705 5005809 -143777663 + CT-rich Low_complexity Low_complexity 3 100 0 2786 143 9 2 chr11 5005909 5006371 -143777101 + MER75 DNA T2_type 14 478 -36 2031 126 23 0 chr11 5006883 5007184 -143776288 + AluSq SINE Alu 1 308 -5 258 344 80 16 chr11 5007806 5007931 -143775541 + L3 LINE CR1 1434 1566 -11 232 362 43 29 chr11 5008217 5008355 -143775117 - L2 LINE L2 -2667 647 508 4422 171 24 45 chr11 5008511 5010231 -143773241 - L1MA8 LINE L1 -17 7693 6019 9658 58 7 110 chr11 5010231 5011774 -143771698 + SVA Other Other 4 1386 0 4422 171 24 45 chr11 5011774 5011835 -143771637 - L1MA8 LINE L1 -1691 6019 5958 * 4828 200 36 15 chr11 5011831 5012529 -143770943 - L1MA8 LINE L1 -1923 5642 4905 2621 22 0 38 chr11 5012529 5012843 -143770629 - AluYb8 SINE Alu -7 311 10 4828 200 36 15 chr11 5012843 5013374 -143770098 - L1MA8 LINE L1 -2660 4905 4387 2564 234 16 61 chr11 5013370 5014448 -143769024 - L1MA8 LINE L1 -4594 2971 2008 * 1312 229 32 12 chr11 5014649 5015063 -143768409 - L1MA8 LINE L1 -6685 804 84 184 388 17 17 chr11 5015756 5015872 -143767600 - L2 LINE L2 -184 3088 2973 1845 158 0 34 chr11 5016103 5016426 -143767046 + AluJb SINE Alu 1 312 0 351 0 0 0 chr11 5016908 5016947 -143766525 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 342 146 45 chr11 5019385 5020051 -143763421 + L2 LINE L2 2026 2758 -556 195 287 20 99 chr11 5020086 5020187 -143763285 + L2 LINE L2 3145 3237 -35 287 115 39 0 chr11 5020206 5020258 -143763214 + GA-rich Low_complexity Low_complexity 3 56 0 180 318 47 9 chr11 5020264 5020371 -143763101 + L2 LINE L2 2798 2908 -406 184 337 54 43 chr11 5020717 5020809 -143762663 - L2 LINE L2 -166 3106 3014 494 337 168 28 chr11 5021072 5021917 -143761555 - L2 LINE L2 -553 2761 1799 287 374 133 29 chr11 5023136 5023550 -143759922 + L3 LINE CR1 935 1391 -186 21 0 0 0 chr11 5024248 5024269 -143759203 + AT_rich Low_complexity Low_complexity 1 21 0 554 250 47 26 chr11 5024570 5024762 -143758710 + MLT1J LTR MaLR 316 511 0 293 369 108 0 chr11 5024998 5025212 -143758260 - L2 LINE L2 -654 2660 2424 339 340 46 92 chr11 5025242 5025548 -143757924 - L2 LINE L2 -2042 1272 981 5288 128 16 16 chr11 5025824 5026871 -143756601 + L1PA15 LINE L1 5119 6165 0 480 280 25 30 chr11 5027088 5027288 -143756184 - L1PA12 LINE L1 -5198 2383 2185 1318 313 19 30 chr11 5027745 5028339 -143755133 - L1PA12 LINE L1 -6200 1374 788 192 152 0 0 chr11 5028538 5028571 -143754901 + T-rich Low_complexity Low_complexity 1 33 0 1409 227 35 28 chr11 5028575 5029362 -143754110 + L1ME LINE L1 4866 5662 -504 6180 30 0 0 chr11 5029417 5030178 -143753294 - L1PA4 LINE L1 0 6155 5395 3442 25 0 9 chr11 5030177 5030626 -143752846 + L1PA4 LINE L1 4953 5397 -749 * 355 270 40 69 chr11 5030631 5030957 -143752515 - L1M4 LINE L1 -1037 5109 4797 8750 121 8 7 chr11 5030960 5032246 -143751226 + HSMAR1 DNA Mariner 1 1287 0 15841 179 19 9 chr11 5032247 5036499 -143746973 - L1PA14 LINE L1 -1 6160 1890 7508 137 4 2 chr11 5036686 5037985 -143745487 + L1P LINE L1 2786 4086 -2060 664 80 44 0 chr11 5037981 5038043 -143745429 + L1PA2 LINE L1 5319 5377 -797 * 17200 30 1 0 chr11 5038043 5039457 -143744015 + L1PA2 LINE L1 3305 4716 -1439 2825 7 0 0 chr11 5039457 5039764 -143743708 + AluYb8 SINE Alu 1 307 -11 17200 30 1 0 chr11 5039764 5041211 -143742261 + L1PA2 LINE L1 4716 6155 0 664 80 44 0 chr11 5041211 5041261 -143742211 + L1PA2 LINE L1 5377 5436 -738 290 342 0 9 chr11 5041569 5041680 -143741792 - ERVL LTR ERVL -664 5100 4991 366 324 106 32 chr11 5042508 5042943 -143740529 - L2 LINE L2 -1277 2037 1571 407 311 52 46 chr11 5043630 5043958 -143739514 + L1M4 LINE L1 4028 4357 -1789 329 326 0 0 chr11 5044369 5044458 -143739014 - L2 LINE L2 -16 3297 3209 5879 223 37 23 chr11 5044514 5048599 -143734873 + L1PBa LINE L1 3 3194 -3668 270 208 75 50 chr11 5048641 5048761 -143734711 + L1MA9 LINE L1 6150 6272 -40 432 55 0 0 chr11 5048778 5048833 -143734639 + (CA)n Simple_repeat Simple_repeat 2 56 0 742 314 147 0 chr11 5048847 5049166 -143734306 - LTR33 LTR ERVL -153 368 3 21 0 0 0 chr11 5050714 5050735 -143732737 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5050846 5050870 -143732602 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 5050991 5051024 -143732448 + AT_rich Low_complexity Low_complexity 1 33 0 2030 103 9 59 chr11 5051061 5051382 -143732090 + AluSc SINE Alu 1 305 -4 2048 138 13 3 chr11 5051469 5051767 -143731705 + AluJb SINE Alu 1 301 -11 742 89 45 0 chr11 5053141 5053253 -143730219 - L1PB1 LINE L1 -6 6145 6029 37 23 0 0 chr11 5053439 5053483 -143729989 + AT_rich Low_complexity Low_complexity 1 44 0 313 289 63 11 chr11 5053631 5053821 -143729651 + L1ME LINE L1 5556 5755 -366 4994 112 29 115 chr11 5054008 5054114 -143729358 + L1MA4 LINE L1 5211 5324 -976 2013 80 109 0 chr11 5054114 5054388 -143729084 + AluY SINE Alu 1 304 -7 4994 112 29 115 chr11 5054388 5055101 -143728371 + L1MA4 LINE L1 5324 5901 -399 1979 60 0 0 chr11 5055101 5055333 -143728139 + AluSx SINE Alu 1 232 -80 4994 112 29 115 chr11 5055333 5055702 -143727770 + L1MA4 LINE L1 5901 6300 0 207 0 0 0 chr11 5055860 5055883 -143727589 + (TA)n Simple_repeat Simple_repeat 2 24 0 31 44 0 0 chr11 5056042 5056087 -143727385 + AT_rich Low_complexity Low_complexity 1 45 0 184 205 0 0 chr11 5056462 5056501 -143726971 - L2 LINE L2 -981 2333 2295 1944 172 3 0 chr11 5056646 5056949 -143726523 - AluSx SINE Alu -8 304 1 360 292 77 0 chr11 5058230 5058425 -143725047 + L1ME LINE L1 5520 5729 -392 22 70 0 0 chr11 5058480 5058523 -143724949 + AT_rich Low_complexity Low_complexity 1 43 0 674 305 14 9 chr11 5058573 5058796 -143724676 - MIR SINE MIR -2 260 37 217 276 26 97 chr11 5058824 5058981 -143724491 + MIR SINE MIR 58 202 -60 180 294 119 55 chr11 5059120 5059229 -143724243 + L2 LINE L2 3175 3290 -23 228 285 106 80 chr11 5059746 5059897 -143723575 - MIR SINE MIR -71 191 37 243 88 0 0 chr11 5059963 5059997 -143723475 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1276 255 96 43 chr11 5060783 5061365 -143722107 + MLT1G LTR MaLR 17 590 0 1214 227 148 43 chr11 5061560 5062027 -143721445 - LTR41 LTR ERVL -1 772 257 674 309 114 32 chr11 5062083 5062584 -143720888 + L1M4 LINE L1 8 549 -5993 950 185 50 37 chr11 5062591 5062889 -143720583 + L1M4 LINE L1 1029 1330 -5212 410 212 51 0 chr11 5062903 5063021 -143720451 + L1M4 LINE L1 1627 1750 -4896 1135 236 19 33 chr11 5063030 5063390 -143720082 + L1M4 LINE L1 1706 2060 -4586 309 214 71 8 chr11 5063408 5063534 -143719938 + L1M4 LINE L1 2242 2375 -4271 358 227 0 0 chr11 5063535 5063601 -143719871 - MER2 DNA MER2_type 0 345 280 648 208 66 9 chr11 5063647 5063891 -143719581 + L1M4 LINE L1 2567 2823 -3821 1277 214 18 25 chr11 5063927 5064203 -143719269 + Tigger7 DNA MER2_type 1 274 -459 383 224 0 47 chr11 5064203 5064288 -143719184 + Tigger7 DNA MER2_type 2395 2475 -12 713 204 28 21 chr11 5064294 5064633 -143718839 + L1M4 LINE L1 2828 3275 -3369 8399 215 18 31 chr11 5064633 5067604 -143715868 + L1P3 LINE L1 2 3083 -3378 3978 13 0 0 chr11 5067707 5068155 -143715317 + L1PA2 LINE L1 5698 6145 -10 709 295 85 9 chr11 5069240 5069464 -143714008 + MIR SINE MIR 9 249 -13 382 302 140 4 chr11 5069500 5069735 -143713737 + L1ME LINE L1 5027 5293 -853 680 276 19 31 chr11 5069880 5070137 -143713335 + L1ME LINE L1 5477 5730 -432 1530 202 3 40 chr11 5070741 5071112 -143712360 - MLT1A2 LTR MaLR -4 370 14 615 247 82 0 chr11 5073163 5073321 -143710151 + MIR SINE MIR 12 182 -80 303 259 62 0 chr11 5073514 5073595 -143709877 + L2 LINE L2 3147 3232 -40 1860 163 3 7 chr11 5073907 5074201 -143709271 - AluJo SINE Alu -19 293 1 266 324 0 0 chr11 5074473 5074547 -143708925 - L2 LINE L2 -11 3302 3229 195 258 161 39 chr11 5075458 5075613 -143707859 - MIR3 SINE MIR -21 187 14 450 94 47 0 chr11 5078564 5078628 -143704844 + AluJ/FRAM SINE Alu 221 287 -25 24 32 0 0 chr11 5078696 5078727 -143704745 + AT_rich Low_complexity Low_complexity 1 31 0 993 238 82 13 chr11 5079091 5079394 -143704078 + MER46C DNA MER2_type 2 325 -13 336 213 0 0 chr11 5079946 5080021 -143703451 - L1PB4 LINE L1 0 6156 6082 2250 116 3 0 chr11 5080154 5080457 -143703015 + AluSx SINE Alu 1 304 -8 274 284 9 17 chr11 5080549 5080665 -143702807 + L1M4 LINE L1 4491 4605 -1541 26 30 0 0 chr11 5080775 5080808 -143702664 + AT_rich Low_complexity Low_complexity 1 33 0 246 303 67 6 chr11 5081738 5081916 -143701556 + HAL1b LINE L1 433 621 -727 245 257 29 29 chr11 5083854 5083924 -143699548 + MIR SINE MIR 12 81 -127 799 238 72 25 chr11 5083969 5084201 -143699271 - MIR SINE MIR -31 231 2 2273 108 10 0 chr11 5084528 5084835 -143698637 + AluSx SINE Alu 1 310 -2 1958 138 3 3 chr11 5085383 5085707 -143697765 + AluSx SINE Alu 1 312 0 1986 91 14 11 chr11 5085791 5086066 -143697406 + AluSq SINE Alu 2 277 -36 879 71 58 0 chr11 5086066 5086221 -143697251 + GA-rich Low_complexity Low_complexity 2 165 0 285 300 22 0 chr11 5086409 5086499 -143696973 - L2 LINE L2 -1609 1705 1614 1247 155 18 10 chr11 5086645 5087067 -143696405 - LTR54 LTR ERV1 0 510 2 1720 239 68 42 chr11 5087068 5087320 -143696152 - LTR49-int LTR ERV1 -393 7144 6900 2327 138 23 0 chr11 5087320 5087674 -143695798 + THE1B LTR MaLR 1 362 -2 1720 239 68 42 chr11 5087674 5087939 -143695533 - LTR49-int LTR ERV1 -637 6900 6614 4396 229 52 62 chr11 5088032 5088240 -143695232 - LTR49-int LTR ERV1 -697 4174 3965 1648 214 0 14 chr11 5088240 5088535 -143694937 + AluJo SINE Alu 1 291 -21 4396 229 52 62 chr11 5088535 5090025 -143693447 - LTR49-int LTR ERV1 -906 3965 2493 393 261 82 31 chr11 5090028 5090360 -143693112 - LTR49-int LTR ERV1 -2129 4202 2455 2583 66 0 41 chr11 5090397 5090761 -143692711 + L1PA6 LINE L1 5805 6153 -1 2051 197 15 6 chr11 5090864 5091641 -143691831 + L1M2 LINE L1 4877 5660 -652 7458 161 31 27 chr11 5091642 5093184 -143690288 + L1M4c LINE L1 175 1722 -4662 1694 136 12 37 chr11 5093182 5093506 -143689966 + L1 LINE L1 3524 3839 -2307 * 1523 100 56 0 chr11 5093508 5093739 -143689733 + L1PA16 LINE L1 5915 6158 -8 24 0 0 0 chr11 5093749 5093773 -143689699 + AT_rich Low_complexity Low_complexity 1 24 0 1102 135 0 2 chr11 5094057 5094324 -143689148 + AluSx SINE Alu 1 311 -1 1191 234 80 13 chr11 5094324 5094854 -143688618 + L1M1 LINE L1 3530 4151 -3414 385 254 64 0 chr11 5094878 5094988 -143688484 + L1M1 LINE L1 4525 4641 -2924 24 0 0 0 chr11 5094994 5095018 -143688454 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 5095107 5095128 -143688344 + AT_rich Low_complexity Low_complexity 1 21 0 241 341 99 0 chr11 5095352 5095443 -143688029 - L2 LINE L2 -51 3221 3122 1885 160 10 3 chr11 5096216 5096509 -143686963 - AluSx SINE Alu -17 295 1 371 273 87 17 chr11 5097278 5097486 -143685986 - MLT1I LTR MaLR -123 327 93 40466 35 24 1 chr11 5097920 5103717 -143679755 + L1PA3 LINE L1 13 5942 -213 291 306 162 20 chr11 5103874 5104171 -143679301 + MLT1J2 LTR MaLR 67 405 -45 544 269 7 13 chr11 5104217 5104366 -143679106 - L2 LINE L2 -967 2347 2200 2276 119 3 0 chr11 5104602 5104912 -143678560 - AluSx SINE Alu -1 311 1 1897 152 0 30 chr11 5105025 5105322 -143678150 - AluSx SINE Alu -14 298 11 429 328 83 23 chr11 5105550 5105795 -143677677 - MIR SINE MIR 0 262 8 280 335 68 58 chr11 5107010 5107303 -143676169 + L2 LINE L2 2535 2830 -484 232 313 167 30 chr11 5107505 5107703 -143675769 + MIR SINE MIR 35 259 -3 330 312 25 33 chr11 5107709 5107956 -143675516 + L1M3 LINE L1 4793 5039 -1107 247 254 54 23 chr11 5108194 5108324 -143675148 + L1M3 LINE L1 5314 5447 -724 259 319 48 18 chr11 5108366 5108532 -143674940 + L1ME LINE L1 5530 5700 -421 2049 129 4 0 chr11 5108643 5108969 -143674503 - AluSx SINE Alu 0 329 3 808 194 37 42 chr11 5109223 5109439 -143674033 - MER96B DNA MER1_type? -1 416 202 38 66 0 28 chr11 5109471 5109577 -143673895 + AT_rich Low_complexity Low_complexity 1 103 0 281 317 110 0 chr11 5110419 5110501 -143672971 - L2 LINE L2 -36 3236 3146 615 290 60 10 chr11 5110603 5110803 -143672669 + MIR SINE MIR 50 259 -3 9354 161 117 17 chr11 5110803 5112585 -143670887 + L1MA3 LINE L1 13 1972 -5593 648 116 24 109 chr11 5112614 5112693 -143670779 - MER41A-int LTR ERV1 -3691 2255 2171 2171 115 0 13 chr11 5112693 5112997 -143670475 - AluSx SINE Alu -12 300 1 648 116 24 109 chr11 5112997 5113113 -143670359 - MER41A-int LTR ERV1 -3775 2171 1740 * 714 111 133 7 chr11 5113109 5113244 -143670228 - MER41A-int LTR ERV1 -3929 2017 1866 * 1932 175 59 10 chr11 5113243 5113631 -143669841 - MER41A-int LTR ERV1 -5166 2371 1965 * 4754 136 53 30 chr11 5113630 5114837 -143668635 - MER41A-int LTR ERV1 -4627 1319 1 277 104 338 13 chr11 5114846 5114923 -143668549 - MER41A-int LTR ERV1 -5844 102 1 4193 70 3 26 chr11 5115007 5115574 -143667898 - MER41A LTR ERV1 0 554 1 1258 128 68 16 chr11 5115574 5115823 -143667649 + L1MA3 LINE L1 2828 3089 -4476 1612 160 36 14 chr11 5115832 5116169 -143667303 - MER4A LTR ERV1 -1 663 261 501 163 10 10 chr11 5116169 5116267 -143667205 - MER4A LTR ERV1 -566 98 1 14205 150 39 18 chr11 5116269 5116501 -143666971 + L1MA3 LINE L1 3096 3322 -4401 2150 116 0 3 chr11 5116501 5116821 -143666651 - AluSx SINE Alu 0 319 1 14205 150 39 18 chr11 5116821 5120967 -143662505 + L1MA3 LINE L1 3322 7571 -152 1965 147 7 3 chr11 5120967 5121267 -143662205 + AluSx SINE Alu 1 301 -11 14205 150 39 18 chr11 5121267 5121312 -143662160 + L1MA3 LINE L1 7571 7614 -109 24 0 0 0 chr11 5121312 5121336 -143662136 + AT_rich Low_complexity Low_complexity 1 24 0 415 343 32 32 chr11 5122010 5122226 -143661246 - MIR SINE MIR -28 234 19 276 372 16 0 chr11 5122396 5122517 -143660955 - L2 LINE L2 -995 2319 2197 294 291 45 18 chr11 5122904 5123014 -143660458 - L2 LINE L2 -33 3280 3168 21 0 0 0 chr11 5123298 5123319 -143660153 + AT_rich Low_complexity Low_complexity 1 21 0 210 330 0 11 chr11 5123471 5123559 -143659913 + GA-rich Low_complexity Low_complexity 3 89 0 1807 143 3 18 chr11 5126038 5126324 -143657148 + AluJo SINE Alu 1 282 -30 235 293 93 7 chr11 5126329 5126469 -143657003 + L1MC4 LINE L1 6613 6764 -1278 500 239 35 0 chr11 5127113 5127226 -143656246 + MIR SINE MIR 32 148 -114 1408 6 0 0 chr11 5127229 5127385 -143656087 + L1HS LINE L1 6000 6155 0 189 94 0 0 chr11 5127387 5127419 -143656053 + (A)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 5127434 5127455 -143656017 + (A)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr11 5127880 5127911 -143655561 + AT_rich Low_complexity Low_complexity 1 31 0 5996 30 1 1 chr11 5127925 5128588 -143654884 + L1PA4 LINE L1 5474 6136 -19 882 271 18 5 chr11 5128900 5129118 -143654354 - MIR SINE MIR -1 261 41 2252 108 0 0 chr11 5129410 5129705 -143653767 + AluSg SINE Alu 2 296 -14 830 268 91 40 chr11 5129705 5130101 -143653371 - LTR33 LTR ERVL -59 462 47 374 238 133 9 chr11 5130140 5130245 -143653227 + L2 LINE L2 1121 1238 -2076 261 348 52 9 chr11 5130352 5130467 -143653005 - L2 LINE L2 -4 3309 3190 26 0 0 0 chr11 5130635 5130661 -143652811 + AT_rich Low_complexity Low_complexity 1 26 0 493 108 15 0 chr11 5130921 5130986 -143652486 + AluJ/FLAM SINE Alu 2 67 -245 836 112 0 0 chr11 5130988 5131104 -143652368 + AluSq SINE Alu 102 217 -96 820 169 0 0 chr11 5131371 5131525 -143651947 + L1HS LINE L1 6000 6153 -2 40 0 0 0 chr11 5131525 5131565 -143651907 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr11 5131575 5131597 -143651875 + (A)n Simple_repeat Simple_repeat 1 22 0 190 260 91 0 chr11 5131597 5131674 -143651798 + MIR SINE MIR 137 220 -42 186 43 0 0 chr11 5131694 5131717 -143651755 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1723 147 38 12 chr11 5132915 5133234 -143650238 - L1MA8 LINE L1 -4 6287 5961 234 167 0 0 chr11 5133458 5133518 -143649954 + A-rich Low_complexity Low_complexity 1 60 0 235 265 0 0 chr11 5133601 5133650 -143649822 + L2 LINE L2 3210 3258 -14 647 242 0 18 chr11 5134566 5134731 -143648741 - MIR SINE MIR 0 262 101 4220 173 18 31 chr11 5134945 5135762 -143647710 + L1MB3 LINE L1 5375 6181 -2 1581 219 39 8 chr11 5135909 5136342 -143647130 + L1ME2 LINE L1 5628 6086 -76 673 265 196 3 chr11 5136350 5136656 -143646816 + L1MD1 LINE L1 2034 2398 -4142 1928 141 7 10 chr11 5136660 5136964 -143646508 + MER1B DNA MER1_type 37 339 0 1192 217 38 9 chr11 5136964 5137506 -143645966 + L1MD1 LINE L1 2391 2943 -3597 9623 88 19 1 chr11 5137562 5138850 -143644622 + L1P LINE L1 11 1321 -4825 7948 36 0 2 chr11 5138850 5140371 -143643101 + L1PA5 LINE L1 4632 6150 -4 4232 230 83 15 chr11 5140424 5141755 -143641717 + L1MD1 LINE L1 3157 4578 -1962 2912 187 64 40 chr11 5141754 5141803 -143641669 + L1MD1 LINE L1 5928 5974 -662 * 2036 163 54 11 chr11 5141803 5142153 -143641319 - MLT1A1 LTR MaLR 0 365 1 2912 187 64 40 chr11 5142153 5142386 -143641086 + L1MD1 LINE L1 5974 6200 -436 2230 101 7 3 chr11 5142386 5142684 -143640788 + AluSq SINE Alu 1 299 -14 2912 187 64 40 chr11 5142684 5143083 -143640389 + L1MD1 LINE L1 6200 6627 -9 1934 191 55 0 chr11 5143103 5143433 -143640039 + MER7A DNA MER2_type 1 346 0 182 255 78 0 chr11 5143501 5143552 -143639920 + L2 LINE L2 3258 3312 -1 31 76 0 0 chr11 5143564 5143630 -143639842 + AT_rich Low_complexity Low_complexity 1 66 0 43264 38 26 2 chr11 5143761 5149013 -143634459 + L1P LINE L1 5 5382 -764 213 247 136 25 chr11 5151182 5151263 -143632209 + L2 LINE L2 2969 3058 -214 274 106 0 21 chr11 5151391 5151438 -143632034 + MIR SINE MIR 217 262 0 203 133 0 0 chr11 5151854 5151884 -143631588 + (TG)n Simple_repeat Simple_repeat 2 31 0 2199 126 35 20 chr11 5152024 5152366 -143631106 + MER7A DNA MER2_type 1 345 -1 931 180 22 28 chr11 5152397 5152575 -143630897 - MER5B DNA MER1_type 0 178 2 454 287 61 29 chr11 5153287 5153507 -143629965 - MIR SINE MIR 0 262 38 382 184 0 26 chr11 5153990 5154066 -143629406 + L1PB4 LINE L1 6083 6156 0 1974 144 3 3 chr11 5154537 5154835 -143628637 - AluSx SINE Alu -14 298 1 407 271 53 33 chr11 5154845 5154996 -143628476 - MIR SINE MIR -43 219 66 1987 128 0 0 chr11 5155057 5155339 -143628133 + AluSx SINE Alu 5 286 -26 32 0 0 0 chr11 5155339 5155371 -143628101 + AT_rich Low_complexity Low_complexity 1 32 0 3839 48 119 8 chr11 5155811 5156313 -143627159 + LTR6B LTR ERV1 1 558 0 473 310 39 0 chr11 5156365 5156520 -143626952 - L2 LINE L2 -312 3001 2841 542 167 0 0 chr11 5156522 5156600 -143626872 + AluS SINE Alu 2 79 -233 1256 348 67 33 chr11 5156765 5157492 -143625980 + L2 LINE L2 1947 2698 -616 345 47 0 0 chr11 5157766 5157809 -143625663 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr11 5157809 5157841 -143625631 + AT_rich Low_complexity Low_complexity 1 32 0 504 263 89 93 chr11 5157891 5158138 -143625334 + L2 LINE L2 3027 3272 0 211 318 196 8 chr11 5158263 5158508 -143624964 + L2 LINE L2 2940 3230 -42 2051 136 3 3 chr11 5159214 5159508 -143623964 + AluSx SINE Alu 19 312 0 1752 194 115 3 chr11 5159746 5160102 -143623370 + MSTD LTR MaLR 1 396 0 223 244 0 0 chr11 5160411 5160456 -143623016 + G-rich Low_complexity Low_complexity 2 46 0 2215 128 0 10 chr11 5161141 5161454 -143622018 - AluSx SINE Alu -2 310 1 2298 30 0 0 chr11 5161683 5161948 -143621524 - AluY SINE Alu -46 265 1 225 132 0 0 chr11 5162134 5162172 -143621300 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 417 158 142 17 chr11 5162527 5162647 -143620825 + LTR37A LTR ERV1 13 147 -279 466 88 38 0 chr11 5164292 5164372 -143619100 + CT-rich Low_complexity Low_complexity 2 84 0 648 229 24 24 chr11 5165033 5165199 -143618273 + MER31-int LTR ERV1 3817 3982 -954 757 152 0 0 chr11 5165199 5165304 -143618168 + AluSq/x SINE Alu 2 106 -207 867 223 48 65 chr11 5165323 5165615 -143617857 + MER31-int LTR ERV1 3973 4259 -677 1686 201 84 15 chr11 5165615 5166009 -143617463 + LTR37A LTR ERV1 4 424 -2 1887 92 0 8 chr11 5167728 5167977 -143615495 - AluSq SINE Alu -66 247 1 401 283 8 17 chr11 5168307 5168427 -143615045 + L2 LINE L2 2587 2705 -609 253 255 28 78 chr11 5168469 5168610 -143614862 + L1MEd LINE L1 88 221 -5984 658 236 112 43 chr11 5168789 5169042 -143614430 + MLT1E LTR MaLR 54 319 -248 3831 86 67 8 chr11 5169063 5169586 -143613886 + MER41A LTR ERV1 1 554 0 4940 124 46 10 chr11 5169586 5170481 -143612991 + MER41A-int LTR ERV1 1 1481 -5241 1118 126 0 6 chr11 5170463 5170630 -143612842 + MER41A-int LTR ERV1 929 1094 -4852 * 306 0 0 0 chr11 5170633 5170667 -143612805 + (TG)n Simple_repeat Simple_repeat 1 34 0 12460 101 28 28 chr11 5170667 5173618 -143609854 + MER41A-int LTR ERV1 1360 5942 -4 4339 81 0 4 chr11 5173620 5174176 -143609296 + MER41A LTR ERV1 1 554 0 248 272 64 0 chr11 5174178 5174303 -143609169 + L1MEd LINE L1 1363 1495 -4901 310 282 0 0 chr11 5174332 5174402 -143609070 - MER5A DNA MER1_type -80 105 29 649 140 0 10 chr11 5175311 5175411 -143608061 - MER4A LTR ERV1 -564 100 2 224 274 181 61 chr11 5175411 5175754 -143607718 + L2 LINE L2 2918 3301 -12 551 312 132 0 chr11 5175872 5176077 -143607395 + MIR SINE MIR 31 262 0 309 169 0 99 chr11 5176179 5176250 -143607222 - L1MC4 LINE L1 -1339 6703 6640 * 315 203 99 2 chr11 5176246 5176333 -143607139 + L1M LINE L1 5266 5346 -828 397 246 205 0 chr11 5177138 5177260 -143606212 + MER5A DNA MER1_type 43 189 0 305 243 27 14 chr11 5177994 5178068 -143605404 + MIR SINE MIR 2 76 -186 12386 141 42 28 chr11 5178080 5178683 -143604789 - L1MA3 LINE L1 0 6305 5712 2318 84 7 0 chr11 5178683 5178993 -143604479 - AluSx SINE Alu 0 312 1 12386 141 42 28 chr11 5178993 5181227 -143602245 - L1MA3 LINE L1 -593 5712 3413 2308 102 0 0 chr11 5181227 5181540 -143601932 - AluSp SINE Alu 0 313 1 12386 141 42 28 chr11 5181540 5182165 -143601307 - L1MA3 LINE L1 -2892 3413 2798 442 298 88 18 chr11 5182363 5182534 -143600938 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 5182549 5182745 -143600727 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 5183497 5183685 -143599787 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 5183751 5183828 -143599644 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 5187217 5187463 -143596009 + L2 LINE L2 1727 2004 -1310 397 249 112 81 chr11 5187933 5188130 -143595342 - L2 LINE L2 0 3272 3070 1536 165 38 48 chr11 5188435 5188514 -143594958 + Tigger3(Golem) DNA MER2_type 1 79 -1152 1750 177 3 10 chr11 5188514 5188824 -143594648 + AluJo SINE Alu 1 308 -4 1536 165 38 48 chr11 5188824 5189035 -143594437 + Tigger3(Golem) DNA MER2_type 79 288 -943 251 264 27 55 chr11 5189199 5189290 -143594182 - MIR SINE MIR -109 99 16 2185 100 10 0 chr11 5189344 5189653 -143593819 - AluSp SINE Alu -1 312 1 496 342 25 20 chr11 5189685 5189884 -143593588 + L2 LINE L2 3069 3268 -4 1839 121 78 14 chr11 5190735 5191081 -143592391 + L1MC2 LINE L1 5977 6344 0 183 80 0 0 chr11 5191111 5191136 -143592336 + (TG)n Simple_repeat Simple_repeat 2 26 0 1733 168 7 7 chr11 5192089 5192386 -143591086 + AluJb SINE Alu 1 297 -15 237 278 24 32 chr11 5192863 5192989 -143590483 + C-rich Low_complexity Low_complexity 3 127 0 375 23 0 0 chr11 5193153 5193197 -143590275 + (GA)n Simple_repeat Simple_repeat 1 44 0 1849 284 2 2 chr11 5194781 5195200 -143588272 + LTR16A LTR ERVL 24 442 -8 311 374 168 3 chr11 5195204 5195514 -143587958 + L2 LINE L2 2482 2842 -472 288 154 0 0 chr11 5195601 5195653 -143587819 + T-rich Low_complexity Low_complexity 1 52 0 258 305 102 17 chr11 5195675 5195793 -143587679 + L2 LINE L2 2931 3058 -214 1497 214 123 106 chr11 5195801 5196441 -143587031 + MLT1E2 LTR MaLR 4 626 0 498 267 58 49 chr11 5196539 5196764 -143586708 - L2 LINE L2 -645 2669 2443 650 237 38 38 chr11 5196799 5197010 -143586462 - MIR SINE MIR -44 218 8 233 304 82 38 chr11 5197028 5197129 -143586343 + L2 LINE L2 1266 1361 -1953 267 54 0 0 chr11 5197129 5197166 -143586306 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 304 82 38 chr11 5197166 5197248 -143586224 + L2 LINE L2 1361 1457 -1857 912 291 188 9 chr11 5197248 5197816 -143585656 - L2 LINE L2 -956 2358 1689 308 82 0 20 chr11 5197826 5197875 -143585597 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 218 368 69 10 chr11 5197877 5198081 -143585391 - L2 LINE L2 -1637 1677 1462 669 294 117 35 chr11 5198082 5198477 -143584995 + MLT1J LTR MaLR 85 511 0 344 348 176 27 chr11 5198484 5198560 -143584912 - L2 LINE L2 -1855 1459 1396 207 69 0 0 chr11 5198560 5198589 -143584883 + (TG)n Simple_repeat Simple_repeat 1 29 0 344 348 176 27 chr11 5198589 5198848 -143584624 - L2 LINE L2 -1918 1396 1074 1135 162 65 148 chr11 5198926 5199278 -143584194 + MLT1B LTR MaLR 68 390 0 213 189 57 38 chr11 5199874 5199927 -143583545 - MER5A DNA MER1_type -78 111 58 2625 17 0 0 chr11 5201703 5202003 -143581469 - AluYa5 SINE Alu -11 300 1 463 250 159 6 chr11 5202794 5202970 -143580502 + MIR SINE MIR 47 249 -13 319 220 28 73 chr11 5202991 5203028 -143580444 + MIR SINE MIR 109 146 -116 188 86 29 0 chr11 5203028 5203063 -143580409 + (CAT)n Simple_repeat Simple_repeat 1 36 0 319 220 28 73 chr11 5203063 5203134 -143580338 + MIR SINE MIR 146 212 -50 4067 71 28 33 chr11 5203244 5203604 -143579868 - L1PB2 LINE L1 -5 6146 5789 2019 137 0 3 chr11 5203604 5203917 -143579555 - AluSx SINE Alu 0 312 1 4067 71 28 33 chr11 5203917 5204135 -143579337 - L1PB2 LINE L1 -362 5789 5571 1309 209 65 69 chr11 5204523 5205001 -143578471 + MLT1E2 LTR MaLR 105 606 -20 273 29 0 0 chr11 5205001 5205035 -143578437 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 209 65 69 chr11 5205035 5205056 -143578416 + MLT1E2 LTR MaLR 606 626 0 1138 193 0 5 chr11 5205226 5205428 -143578044 + AluJb SINE Alu 1 201 -111 2104 86 17 0 chr11 5205534 5205825 -143577647 - AluY SINE Alu -15 296 1 346 292 77 15 chr11 5206588 5206718 -143576754 - L2 LINE L2 -10 3303 3166 405 0 0 0 chr11 5207962 5208007 -143575465 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 158 70 2 chr11 5209002 5209402 -143574070 + MSTA LTR MaLR 2 428 0 284 383 101 15 chr11 5209446 5209772 -143573700 - L2 LINE L2 -337 2977 2624 599 296 40 6 chr11 5209792 5209968 -143573504 - MIR SINE MIR -6 256 75 814 233 33 6 chr11 5210331 5210511 -143572961 + MIR SINE MIR 78 262 0 213 351 13 0 chr11 5213826 5213903 -143569569 - L2 LINE L2 0 3272 3195 550 339 60 45 chr11 5214257 5214790 -143568682 - L2 LINE L2 -35 3237 2702 302 358 61 14 chr11 5215136 5215284 -143568188 + L2 LINE L2 2252 2406 -908 1564 209 126 26 chr11 5215400 5215830 -143567642 + MLT1G LTR MaLR 118 590 0 1106 188 27 5 chr11 5215830 5216053 -143567419 - L1ME3A LINE L1 -23 6147 5920 285 360 96 13 chr11 5216064 5216453 -143567019 + L2 LINE L2 2461 2966 -348 750 179 31 0 chr11 5216462 5216624 -143566848 - L1MD3 LINE L1 0 7995 7829 2481 65 0 0 chr11 5216624 5216934 -143566538 - AluSg SINE Alu 0 310 1 219 411 65 0 chr11 5216959 5217083 -143566389 + L2 LINE L2 2952 3083 -189 22 70 0 0 chr11 5217912 5217955 -143565517 + GC_rich Low_complexity Low_complexity 1 43 0 184 239 0 43 chr11 5218584 5218630 -143564842 - L2 LINE L2 -95 3218 3175 362 269 30 2 chr11 5219010 5219128 -143564344 - L1ME1 LINE L1 -44 6122 5992 24 0 0 0 chr11 5219773 5219797 -143563675 + AT_rich Low_complexity Low_complexity 1 24 0 194 231 292 11 chr11 5219983 5220075 -143563397 - MIR SINE MIR -61 147 30 244 274 0 0 chr11 5220532 5220583 -143562889 - L2 LINE L2 -15 3257 3207 258 255 74 47 chr11 5220595 5220744 -143562728 - L2 LINE L2 -1 3312 3160 1455 154 36 121 chr11 5220791 5221121 -143562351 + AluSx SINE Alu 1 302 0 338 335 182 36 chr11 5221130 5221850 -143561622 + L2 LINE L2 2210 3035 -237 510 261 60 22 chr11 5223292 5223426 -143560046 - MIR SINE MIR -123 139 1 626 217 43 14 chr11 5223508 5223646 -143559826 - LTR33 LTR ERVL -4 517 376 2179 98 3 10 chr11 5224232 5224528 -143558944 - AluSp SINE Alu -19 294 1 676 348 65 19 chr11 5224644 5225121 -143558351 + L2 LINE L2 1931 2429 -885 698 249 105 5 chr11 5225212 5225421 -143558051 + MIR SINE MIR 32 261 -1 211 357 101 40 chr11 5225665 5226250 -143557222 + L2 LINE L2 2608 3232 -40 207 100 0 0 chr11 5226935 5226965 -143556507 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 913 259 250 26 chr11 5226974 5227842 -143555630 - L2 LINE L2 0 3313 2245 24 32 0 0 chr11 5229301 5229332 -143554140 + AT_rich Low_complexity Low_complexity 1 31 0 889 286 186 12 chr11 5230635 5231100 -143552372 - L2 LINE L2 -2 3311 2770 255 294 64 97 chr11 5231445 5231634 -143551838 + MER5A DNA MER1_type 1 189 0 877 261 111 59 chr11 5232096 5232572 -143550900 - MLT1E2 LTR MaLR 0 626 5 227 263 0 38 chr11 5234805 5234885 -143548587 + G-rich Low_complexity Low_complexity 6 82 0 560 249 159 5 chr11 5237246 5237435 -143546037 - MIR SINE MIR -17 245 28 257 293 13 0 chr11 5238453 5238528 -143544944 - L2 LINE L2 -228 3044 2969 261 0 0 0 chr11 5238530 5238559 -143544913 + (T)n Simple_repeat Simple_repeat 1 29 0 268 388 50 16 chr11 5238972 5239093 -143544379 - L2 LINE L2 -5 3267 3143 220 280 105 21 chr11 5243267 5243410 -143540062 - L2 LINE L2 -463 2851 2697 198 0 0 0 chr11 5243414 5243436 -143540036 + (T)n Simple_repeat Simple_repeat 1 22 0 10560 25 15 1 chr11 5293502 5294764 -143488708 + L1P LINE L1 3529 4808 -1338 1031 113 11 13 chr11 5294868 5296343 -143487129 + HSATII Satellite Satellite 1 1471 -1 785 100 0 21 chr11 5296366 5296506 -143486966 + HSATII Satellite Satellite 17 153 -17 911 121 23 14 chr11 5296522 5297010 -143486462 + HSATII Satellite Satellite 1 492 0 980 112 10 12 chr11 5297033 5298238 -143485234 + HSATII Satellite Satellite 1 1202 -27 998 108 8 14 chr11 5298265 5300399 -143483073 + HSATII Satellite Satellite 1 2120 -16 965 129 22 9 chr11 5300414 5300703 -143482769 + HSATII Satellite Satellite 1 292 -1 926 123 10 16 chr11 5300726 5302167 -143481305 + HSATII Satellite Satellite 1 1432 -1 1064 110 11 12 chr11 5302197 5306731 -143476741 + HSATII Satellite Satellite 1 4528 -23 941 120 15 14 chr11 5306746 5307377 -143476095 + HSATII Satellite Satellite 1 631 -137 935 113 6 12 chr11 5307390 5307884 -143475588 + HSATII Satellite Satellite 1 491 -99 977 99 9 16 chr11 5307913 5308487 -143474985 + HSATII Satellite Satellite 1 570 -16 998 104 8 18 chr11 5308525 5309023 -143474449 + HSATII Satellite Satellite 1 493 -23 974 132 12 13 chr11 5309038 5309489 -143473983 + HSATII Satellite Satellite 1 450 -1 959 110 13 12 chr11 5309519 5311271 -143472201 + HSATII Satellite Satellite 1 1754 -17 818 111 21 0 chr11 5311287 5311431 -143472041 + HSATII Satellite Satellite 1 147 -23 965 113 9 13 chr11 5311446 5311899 -143471573 + HSATII Satellite Satellite 1 451 -23 953 125 16 17 chr11 5311921 5313127 -143470345 + HSATII Satellite Satellite 1 1204 -1 998 110 17 12 chr11 5313157 5314890 -143468582 + HSATII Satellite Satellite 1 1741 -4 779 136 4 18 chr11 5314917 5315197 -143468275 + HSATII Satellite Satellite 1 276 -86 941 125 7 18 chr11 5315356 5316181 -143467291 + HSATII Satellite Satellite 1 816 0 998 117 9 14 chr11 5316204 5317933 -143465539 + HSATII Satellite Satellite 1 1720 -1 998 122 12 16 chr11 5317952 5318871 -143464601 + HSATII Satellite Satellite 1 915 -2 1031 115 19 12 chr11 5318902 5320618 -143462854 + HSATII Satellite Satellite 1 1727 -1 980 105 12 12 chr11 5320648 5321927 -143461545 + HSATII Satellite Satellite 1 1279 -23 953 122 21 18 chr11 5321949 5323155 -143460317 + HSATII Satellite Satellite 1 1209 -1 980 113 13 12 chr11 5323185 5324878 -143458594 + HSATII Satellite Satellite 1 1694 -51 932 109 7 15 chr11 5324912 5325505 -143457967 + HSATII Satellite Satellite 1 588 -11 694 149 18 18 chr11 5325538 5325761 -143457711 + HSATII Satellite Satellite 1 223 -94 986 113 10 16 chr11 5325889 5327427 -143456045 + HSATII Satellite Satellite 1 1529 -9 781 129 18 18 chr11 5327458 5327628 -143455844 + HSATII Satellite Satellite 1 170 0 928 96 13 19 chr11 5327653 5327967 -143455505 + HSATII Satellite Satellite 1 312 -31 998 111 5 0 chr11 5327980 5328192 -143455280 + HSATII Satellite Satellite 1 213 -1 932 127 11 19 chr11 5328215 5328816 -143454656 + HSATII Satellite Satellite 1 596 -1 980 103 12 12 chr11 5328846 5330122 -143453350 + HSATII Satellite Satellite 1 1276 -26 965 137 14 19 chr11 5330147 5330592 -143452880 + HSATII Satellite Satellite 1 442 -1 982 114 12 12 chr11 5330622 5331906 -143451566 + HSATII Satellite Satellite 1 1285 -17 965 108 23 14 chr11 5331922 5332410 -143451062 + HSATII Satellite Satellite 1 492 0 944 121 9 15 chr11 5332433 5334016 -143449456 + HSATII Satellite Satellite 1 1573 -1 989 109 13 8 chr11 5334046 5335161 -143448311 + HSATII Satellite Satellite 1 1120 -8 965 103 7 19 chr11 5335172 5335793 -143447679 + HSATII Satellite Satellite 1 613 -23 932 143 14 19 chr11 5335815 5336260 -143447212 + HSATII Satellite Satellite 1 442 -1 1031 106 10 12 chr11 5336290 5339342 -143444130 + HSATII Satellite Satellite 1 3047 -23 980 117 10 16 chr11 5339355 5342425 -143441047 + HSATII Satellite Satellite 1 3051 -1 977 107 12 11 chr11 5342455 5344684 -143438788 + HSATII Satellite Satellite 1 2229 -27 980 112 14 13 chr11 5344700 5347466 -143436006 + HSATII Satellite Satellite 1 2766 0 965 119 9 17 chr11 5347497 5348333 -143435139 + HSATII Satellite Satellite 1 829 -1 998 114 13 14 chr11 5348363 5350724 -143432748 + HSATII Satellite Satellite 1 2358 0 980 98 6 14 chr11 5350844 5351491 -143431981 + HSATII Satellite Satellite 1 642 -26 977 121 11 16 chr11 5351516 5353737 -143429735 + HSATII Satellite Satellite 1 2210 -1 965 104 12 12 chr11 5353767 5355046 -143428426 + HSATII Satellite Satellite 1 1279 -23 932 117 18 20 chr11 5355068 5355803 -143427669 + HSATII Satellite Satellite 1 733 -1 887 140 9 20 chr11 5355829 5356274 -143427198 + HSATII Satellite Satellite 1 440 -1 980 107 12 12 chr11 5356304 5357580 -143425892 + HSATII Satellite Satellite 1 1276 -26 974 118 18 20 chr11 5357605 5358197 -143425275 + HSATII Satellite Satellite 1 590 0 1012 104 9 13 chr11 5358220 5359359 -143424113 + HSATII Satellite Satellite 1 1134 -23 1019 115 12 12 chr11 5359381 5361445 -143422027 + HSATII Satellite Satellite 1 2063 -1 1031 114 9 15 chr11 5361468 5367133 -143416339 + HSATII Satellite Satellite 1 5633 -23 998 115 11 16 chr11 5367148 5372006 -143411466 + HSATII Satellite Satellite 1 4833 -9 670 147 18 18 chr11 5372037 5372207 -143411265 + HSATII Satellite Satellite 1 170 0 907 123 12 13 chr11 5372232 5373394 -143410078 + HSATII Satellite Satellite 1 1161 -1 998 113 12 12 chr11 5373424 5377796 -143405676 + HSATII Satellite Satellite 1 4370 -8 1031 98 2 15 chr11 5377807 5378425 -143405047 + HSATII Satellite Satellite 1 610 -23 956 119 10 17 chr11 5378449 5379458 -143404014 + HSATII Satellite Satellite 1 1001 -19 980 111 11 11 chr11 5379477 5382317 -143401155 + HSATII Satellite Satellite 1 2840 -23 980 114 14 13 chr11 5382339 5384093 -143399379 + HSATII Satellite Satellite 1 1755 -23 1031 113 10 12 chr11 5384115 5389897 -143393575 + HSATII Satellite Satellite 1 5770 -15 998 118 13 14 chr11 5389911 5392851 -143390621 + HSATII Satellite Satellite 1 2936 -92 1805 93 12 157 chr11 5492872 5492918 -143290554 + MER4E LTR ERV1 421 472 -307 2126 108 7 3 chr11 5492918 5493213 -143290259 - AluSq SINE Alu -6 307 12 1805 93 12 157 chr11 5493213 5493586 -143289886 + MER4E LTR ERV1 472 779 0 3152 165 23 92 chr11 5493595 5493750 -143289722 + LTR8 LTR ERV1 2 166 -525 2235 78 32 7 chr11 5493750 5494031 -143289441 - AluSq SINE Alu -19 294 7 3152 165 23 92 chr11 5494031 5494616 -143288856 + LTR8 LTR ERV1 166 691 0 804 295 28 0 chr11 5494681 5494898 -143288574 + LTR16A LTR ERVL 215 437 -13 2645 59 0 0 chr11 5495032 5495338 -143288134 + AluY SINE Alu 1 306 -5 277 207 34 45 chr11 5495723 5495902 -143287570 + (GTGTG)n Simple_repeat Simple_repeat 4 180 0 330 139 0 0 chr11 5495902 5495974 -143287498 + (G)n Simple_repeat Simple_repeat 1 72 0 200 211 19 0 chr11 5495986 5496038 -143287434 + G-rich Low_complexity Low_complexity 4 56 0 204 40 0 0 chr11 5496052 5496077 -143287395 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 2245 110 47 69 chr11 5496355 5496634 -143286838 + LTR23 LTR ERV1 1 285 -152 4664 103 24 88 chr11 5496634 5496986 -143286486 - MER4E LTR ERV1 0 779 406 2205 118 0 3 chr11 5496986 5497282 -143286190 + AluSc SINE Alu 1 295 -14 4664 103 24 88 chr11 5497282 5497510 -143285962 - MER4E LTR ERV1 -373 406 165 2320 91 6 16 chr11 5497510 5497828 -143285644 + AluYb8 SINE Alu 1 315 -3 4664 103 24 88 chr11 5497828 5497869 -143285603 - MER4E LTR ERV1 -614 165 123 270 0 0 0 chr11 5497869 5497899 -143285573 + (TA)n Simple_repeat Simple_repeat 2 31 0 4664 103 24 88 chr11 5497899 5498107 -143285365 - MER4E LTR ERV1 -656 123 1 2245 110 47 69 chr11 5498107 5498274 -143285198 + LTR23 LTR ERV1 285 437 0 977 79 0 7 chr11 5498432 5498571 -143284901 + MER4C LTR ERV1 1 138 -327 1397 92 0 5 chr11 5498573 5498757 -143284715 + AluSp SINE Alu 130 312 -1 1917 85 115 3 chr11 5498757 5499062 -143284410 + MER4C LTR ERV1 127 465 0 557 223 121 25 chr11 5499064 5499221 -143284251 + MIR SINE MIR 53 224 -38 946 191 126 65 chr11 5499223 5499605 -143283867 - LTR56 LTR ERV1 -21 424 20 180 0 0 0 chr11 5499607 5499627 -143283845 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 292 98 98 0 chr11 5499819 5499870 -143283602 + MIR SINE MIR 102 157 -105 744 176 53 18 chr11 5499872 5500042 -143283430 - LTR49 LTR ERV1 0 595 420 451 174 214 8 chr11 5500040 5500339 -143283133 - LTR29 LTR ERV1 -198 424 1 * 344 269 28 9 chr11 5500339 5500447 -143283025 + MIR SINE MIR 153 262 0 888 170 0 0 chr11 5502920 5503061 -143280411 - FLAM_C SINE Alu -2 141 1 2334 99 13 3 chr11 5503066 5503369 -143280103 - AluSc SINE Alu -3 306 1 695 227 133 10 chr11 5507219 5507422 -143276050 - MIR SINE MIR -20 242 15 289 347 137 16 chr11 5508131 5508379 -143275093 + L2 LINE L2 2951 3228 -44 684 294 38 13 chr11 5508759 5508994 -143274478 + L2 LINE L2 3073 3313 0 456 226 175 32 chr11 5509293 5509602 -143273870 - L1ME4a LINE L1 -2 6119 5767 2230 103 3 20 chr11 5509733 5510034 -143273438 - AluSq SINE Alu -9 304 9 4416 92 17 73 chr11 5510617 5511379 -143272093 - L1PB1 LINE L1 0 6151 5433 21 0 0 0 chr11 5511641 5511662 -143271810 + AT_rich Low_complexity Low_complexity 1 21 0 2052 148 17 0 chr11 5512718 5513015 -143270457 + AluSx SINE Alu 1 302 -10 1050 196 117 58 chr11 5513289 5513511 -143269961 - MLT1A1 LTR MaLR -3 362 112 2612 124 31 49 chr11 5513511 5513690 -143269782 + MER65A LTR ERV1 1 182 -263 2418 86 7 0 chr11 5513690 5513991 -143269481 + AluSp SINE Alu 1 303 -10 2612 124 31 49 chr11 5513991 5514264 -143269208 + MER65A LTR ERV1 182 445 0 1050 196 117 58 chr11 5514264 5514383 -143269089 - MLT1A1 LTR MaLR -253 112 1 1758 185 7 17 chr11 5515934 5516236 -143267236 - AluJo SINE Alu -13 299 1 357 221 40 185 chr11 5517082 5517307 -143266165 + L2 LINE L2 3058 3231 -82 1807 171 30 10 chr11 5517307 5517612 -143265860 - AluSx SINE Alu 0 312 2 357 221 40 185 chr11 5517612 5517684 -143265788 + L2 LINE L2 3231 3312 -1 344 277 84 0 chr11 5517707 5517826 -143265646 - MIR SINE MIR -15 247 119 193 333 42 0 chr11 5518036 5518108 -143265364 + L2 LINE L2 3192 3266 -6 1930 186 0 0 chr11 5518172 5518483 -143264989 - AluJb SINE Alu -1 311 1 275 300 70 20 chr11 5518537 5518637 -143264835 - L2 LINE L2 -26 3287 3183 516 309 24 63 chr11 5518704 5518956 -143264516 - L2 LINE L2 -357 2957 2716 306 154 39 0 chr11 5519198 5519250 -143264222 + L2 LINE L2 3255 3308 -5 195 69 0 0 chr11 5519535 5519564 -143263908 + (CAA)n Simple_repeat Simple_repeat 3 31 0 2179 119 0 3 chr11 5522311 5522621 -143260851 + AluSx SINE Alu 1 309 -3 2359 95 0 0 chr11 5523716 5524011 -143259461 - AluSg SINE Alu -14 296 2 2092 177 36 120 chr11 5524041 5524709 -143258763 - LTR9 LTR ERV1 0 612 1 1372 210 105 18 chr11 5525025 5525358 -143258114 - MER93b LTR ERV1 0 373 12 2250 114 3 0 chr11 5525407 5525704 -143257768 + AluSp SINE Alu 1 298 -15 1644 177 100 84 chr11 5525786 5526168 -143257304 + MLT1C LTR MaLR 8 400 -67 2054 130 0 17 chr11 5526168 5526460 -143257012 - AluSq SINE Alu -25 288 2 1644 177 100 84 chr11 5526460 5526528 -143256944 + MLT1C LTR MaLR 400 465 -2 253 333 9 9 chr11 5527549 5527657 -143255815 + ERVL LTR ERVL 3252 3359 -2405 1155 219 109 27 chr11 5528255 5528621 -143254851 - MSTD LTR MaLR 0 396 1 1351 251 92 14 chr11 5528621 5529043 -143254429 + MLT1C LTR MaLR 13 467 0 197 143 48 0 chr11 5530727 5530769 -143252703 + GA-rich Low_complexity Low_complexity 3 46 0 210 143 0 0 chr11 5530797 5530832 -143252640 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 1327 157 126 28 chr11 5531296 5531574 -143251898 - Charlie5 DNA MER1_type 0 2624 2302 2851 133 9 0 chr11 5531574 5532004 -143251468 - MER57B LTR ERV1 0 434 1 1327 157 126 28 chr11 5532004 5532081 -143251391 - Charlie5 DNA MER1_type -322 2302 2234 2241 125 3 0 chr11 5532296 5532607 -143250865 + AluSx SINE Alu 1 312 0 3008 222 15 15 chr11 5532906 5533558 -143249914 - MER82 DNA MER2_type 0 653 2 421 141 28 0 chr11 5533738 5533809 -143249663 + AluJ/FRAM SINE Alu 224 296 -16 180 125 0 0 chr11 5533847 5533879 -143249593 + (A)n Simple_repeat Simple_repeat 1 32 0 684 242 43 0 chr11 5533954 5534140 -143249332 - MIR SINE MIR -34 228 35 641 198 87 12 chr11 5534629 5534801 -143248671 + MER53 DNA DNA 5 189 0 25 0 0 0 chr11 5535277 5535302 -143248170 + AT_rich Low_complexity Low_complexity 1 25 0 202 234 0 96 chr11 5535407 5535501 -143247971 + MIR SINE MIR 48 132 -130 267 79 0 0 chr11 5535864 5535902 -143247570 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2004 144 3 0 chr11 5535905 5536190 -143247282 - AluJb SINE Alu -26 286 1 918 151 6 38 chr11 5536466 5536625 -143246847 - MER3 DNA MER1_type 0 209 56 2640 86 13 5 chr11 5536946 5537320 -143246152 - L1PA13 LINE L1 -2 6161 5785 657 25 0 0 chr11 5537747 5537826 -143245646 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1345 191 67 21 chr11 5537925 5538207 -143245265 - AluJb SINE Alu -12 300 6 2337 98 3 0 chr11 5538249 5538546 -143244926 - AluSx SINE Alu -14 298 1 316 331 25 32 chr11 5538552 5538709 -143244763 - ERVL LTR ERVL -469 5295 5140 1849 173 31 45 chr11 5540066 5540692 -143242780 - LTR8 LTR ERV1 0 691 1 227 161 18 0 chr11 5540913 5540969 -143242503 + (TA)n Simple_repeat Simple_repeat 2 58 0 876 127 0 0 chr11 5540969 5541087 -143242385 - FLAM_C SINE Alu -19 124 7 2105 133 76 129 chr11 5541277 5541403 -143242069 + MER39B LTR ERV1 1 132 -521 2344 92 3 13 chr11 5541403 5541717 -143241755 + AluSx SINE Alu 1 311 -1 2105 133 76 129 chr11 5541717 5541741 -143241731 + MER39B LTR ERV1 132 156 -497 2201 116 10 0 chr11 5541741 5542044 -143241428 + AluSx SINE Alu 1 306 -6 2105 133 76 129 chr11 5542044 5542176 -143241296 + MER39B LTR ERV1 156 293 -360 1922 164 0 16 chr11 5542176 5542493 -143240979 + AluJo SINE Alu 1 312 0 2105 133 76 129 chr11 5542493 5542735 -143240737 + MER39B LTR ERV1 293 499 -154 899 177 20 0 chr11 5542736 5542910 -143240562 + FRAM SINE Alu 1 173 0 967 158 6 6 chr11 5542911 5543082 -143240390 + MER39 LTR ERV1 537 707 0 2434 95 0 0 chr11 5543572 5543876 -143239596 - AluSq SINE Alu -9 304 1 2282 98 10 0 chr11 5544161 5544457 -143239015 + AluSx SINE Alu 1 299 -13 387 172 46 0 chr11 5544625 5544712 -143238760 + L1MC5 LINE L1 7805 7895 -66 2472 63 3 0 chr11 5544932 5545231 -143238241 + AluY SINE Alu 1 300 -11 312 185 370 0 chr11 5545531 5545612 -143237860 + MER81 DNA DNA 1 111 -3 225 196 0 0 chr11 5546206 5546257 -143237215 + CT-rich Low_complexity Low_complexity 1 51 0 1738 174 119 31 chr11 5546871 5547290 -143236182 + LTR2B LTR ERV1 32 487 -3 2184 109 20 0 chr11 5547626 5547920 -143235552 + AluSx SINE Alu 3 302 -10 2397 135 49 91 chr11 5548646 5548858 -143234614 + L1MA8 LINE L1 5762 5981 -310 2722 36 0 0 chr11 5548858 5549166 -143234306 + AluY SINE Alu 1 308 -3 2397 135 49 91 chr11 5549166 5549502 -143233970 + L1MA8 LINE L1 5981 6287 -4 205 26 26 51 chr11 5549653 5549692 -143233780 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1642 223 72 31 chr11 5549989 5550433 -143233039 - MLT1C LTR MaLR 0 467 6 1059 83 0 0 chr11 5550551 5550683 -143232789 + AluY SINE Alu 1 132 -179 1746 85 0 13 chr11 5550683 5550918 -143232554 + AluY SINE Alu 66 297 -14 1106 228 154 23 chr11 5550936 5551365 -143232107 + MLT1H LTR MaLR 35 555 0 819 354 13 10 chr11 5551387 5551783 -143231689 - HERVL LTR ERVL -1195 4459 4063 671 215 45 40 chr11 5552005 5552182 -143231290 + AluJo SINE Alu 119 296 -16 322 260 39 0 chr11 5552381 5552458 -143231014 - HERVL LTR ERVL -2031 3733 3654 239 167 0 69 chr11 5552497 5552569 -143230903 - L1M4 LINE L1 -303 5818 5759 321 311 0 66 chr11 5552758 5552909 -143230563 - L2 LINE L2 -199 3073 2933 427 245 29 36 chr11 5553287 5553426 -143230046 + MIR SINE MIR 76 213 -49 216 328 95 39 chr11 5553593 5553825 -143229647 + L2 LINE L2 2627 2871 -443 26 30 0 0 chr11 5554106 5554139 -143229333 + AT_rich Low_complexity Low_complexity 1 33 0 322 38 19 19 chr11 5556278 5556331 -143227141 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 253 320 13 0 chr11 5556336 5556411 -143227061 - L2 LINE L2 -13 3300 3225 2031 96 0 4 chr11 5556414 5556674 -143226798 + AluSg1 SINE Alu 32 290 -19 324 77 46 0 chr11 5556674 5556739 -143226733 + (TA)n Simple_repeat Simple_repeat 1 68 0 2188 114 0 25 chr11 5556832 5557147 -143226325 + AluSx SINE Alu 1 307 -5 219 325 100 0 chr11 5557591 5557671 -143225801 - L2 LINE L2 0 3313 3226 2274 102 0 3 chr11 5559627 5559920 -143223552 + AluSq SINE Alu 1 292 -21 1496 161 50 47 chr11 5559939 5560237 -143223235 - AluJo SINE Alu -13 299 1 372 333 33 0 chr11 5560423 5560543 -143222929 - L2 LINE L2 -2 3270 3147 186 290 76 23 chr11 5560838 5560969 -143222503 - MIR SINE MIR -20 242 105 1494 123 0 60 chr11 5561237 5561396 -143222076 + MER50 LTR ERV1 499 639 -95 2359 116 0 0 chr11 5561396 5561707 -143221765 - AluSp SINE Alu -2 311 1 1494 123 0 60 chr11 5561707 5561798 -143221674 + MER50 LTR ERV1 639 734 0 612 191 0 9 chr11 5561800 5561910 -143221562 + MER50-int LTR ERV1 4 112 -7093 267 31 0 0 chr11 5561910 5561942 -143221530 + (A)n Simple_repeat Simple_repeat 1 32 0 672 206 39 7 chr11 5562259 5562414 -143221058 + MER5C DNA MER1_type 1 160 -164 1604 153 11 0 chr11 5562416 5562678 -143220794 + L1MD3 LINE L1 7726 7990 -5 499 167 80 60 chr11 5562686 5562713 -143220759 + MER5C DNA MER1_type 172 197 -127 2389 103 0 0 chr11 5562713 5563024 -143220448 - AluSq SINE Alu -2 311 1 499 167 80 60 chr11 5563024 5563146 -143220326 + MER5C DNA MER1_type 197 324 0 219 262 186 38 chr11 5565265 5565475 -143217997 - L2 LINE L2 -220 3052 2812 189 355 0 0 chr11 5565626 5565702 -143217770 - L2 LINE L2 -611 2703 2628 1241 217 137 35 chr11 5565737 5566161 -143217311 + MLT1C LTR MaLR 1 467 0 249 310 28 0 chr11 5566169 5566240 -143217232 - L2 LINE L2 -42 3271 3199 468 259 91 14 chr11 5566259 5566402 -143217070 - L2 LINE L2 0 3313 3160 332 194 32 0 chr11 5566402 5566526 -143216946 + (AATAG)n Simple_repeat Simple_repeat 1 128 0 255 256 171 82 chr11 5566588 5566857 -143216615 + LTR33A LTR ERVL 13 305 -218 2761 70 99 5 chr11 5566880 5567283 -143216189 + LTR7 LTR ERV1 1 441 -9 14939 110 10 22 chr11 5567293 5570075 -143213397 + HERVH LTR ERV1 1 2995 -4718 5692 105 19 5 chr11 5570054 5570903 -143212569 + HERVH LTR ERV1 3140 4000 -3713 * 3001 132 5 2 chr11 5570898 5571509 -143211963 + HERVH LTR ERV1 4489 5149 -2564 * 1514 127 0 0 chr11 5571510 5571730 -143211742 + HERVH LTR ERV1 5600 5819 -1894 2446 81 65 14 chr11 5571730 5572101 -143211371 + HERVH LTR ERV1 7324 7713 0 2639 86 106 5 chr11 5572101 5572508 -143210964 + LTR7 LTR ERV1 1 448 -2 686 225 41 6 chr11 5572510 5572679 -143210793 + LTR33A LTR ERVL 339 513 -10 359 256 105 47 chr11 5572686 5572877 -143210595 - L2 LINE L2 -224 3089 2888 952 222 135 94 chr11 5572964 5573215 -143210257 + L2 LINE L2 2780 3019 -294 1377 264 3 115 chr11 5573215 5573545 -143209927 - AluSg SINE Alu -7 293 1 952 222 135 94 chr11 5573545 5573807 -143209665 + L2 LINE L2 3019 3313 0 556 296 36 105 chr11 5573806 5574085 -143209387 - L2 LINE L2 -575 2739 2501 * 829 168 0 0 chr11 5574085 5574216 -143209256 + FLAM_A SINE Alu 1 131 -2 556 296 36 105 chr11 5574216 5574382 -143209090 - L2 LINE L2 -813 2501 2325 1867 152 0 34 chr11 5574582 5574905 -143208567 + AluJb SINE Alu 1 312 0 2302 90 3 3 chr11 5574916 5575215 -143208257 + AluSp SINE Alu 1 299 -14 1992 172 0 6 chr11 5575448 5575762 -143207710 + AluSx SINE Alu 1 312 0 417 299 81 11 chr11 5575770 5575944 -143207528 + L1M4 LINE L1 5040 5225 -921 2923 106 5 23 chr11 5575973 5576157 -143207315 - MER57B LTR ERV1 0 434 248 2447 67 0 7 chr11 5576157 5576454 -143207018 + AluY SINE Alu 8 302 -9 2923 106 5 23 chr11 5576454 5576711 -143206761 - MER57B LTR ERV1 -186 248 1 437 292 156 29 chr11 5576716 5577024 -143206448 - L2 LINE L2 -1268 2046 1700 1362 274 114 9 chr11 5577117 5577574 -143205898 + MLT1J LTR MaLR 1 505 -6 2403 102 3 0 chr11 5577581 5577885 -143205587 + AluSx SINE Alu 1 305 -7 449 202 11 21 chr11 5577991 5578085 -143205387 + MIR SINE MIR 63 155 -107 * 636 368 40 35 chr11 5578079 5578381 -143205091 - L2 LINE L2 -1808 1506 1198 2635 61 0 0 chr11 5578381 5578692 -143204780 - AluY SINE Alu 0 311 1 636 368 40 35 chr11 5578692 5578984 -143204488 - L2 LINE L2 -2116 1198 909 435 271 97 13 chr11 5580038 5580193 -143203279 - MIR SINE MIR -63 199 32 2429 91 13 0 chr11 5580436 5580745 -143202727 - AluSp SINE Alu 0 313 1 1116 369 54 15 chr11 5581184 5581972 -143201500 + ERVL LTR ERVL 4484 5346 -418 909 189 26 5 chr11 5582183 5582374 -143201098 + MER4B LTR ERV1 1 195 -415 2428 81 3 0 chr11 5582374 5582671 -143200801 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr11 5582673 5582694 -143200778 + AT_rich Low_complexity Low_complexity 1 21 0 729 154 147 13 chr11 5582696 5582852 -143200620 + MER4D LTR ERV1 357 533 -370 183 339 17 0 chr11 5583319 5583378 -143200094 + MIR SINE MIR 41 100 -162 1294 324 78 26 chr11 5583385 5584228 -143199244 + L2 LINE L2 1931 2817 -497 334 338 152 21 chr11 5584264 5584646 -143198826 + L2 LINE L2 2881 3312 -1 2241 109 3 3 chr11 5584700 5585002 -143198470 + AluSx SINE Alu 1 302 -10 229 204 0 0 chr11 5588503 5588547 -143194925 + GA-rich Low_complexity Low_complexity 1 44 0 417 340 66 33 chr11 5590788 5591123 -143192349 + L2 LINE L2 2550 2895 -419 220 322 91 16 chr11 5591314 5591435 -143192037 + L2 LINE L2 3162 3291 -22 184 135 19 19 chr11 5591447 5591499 -143191973 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 445 290 76 58 chr11 5591910 5592134 -143191338 + Charlie8 DNA MER1_type 12 239 -2178 701 177 38 144 chr11 5592142 5592214 -143191258 + L1MC5 LINE L1 7203 7281 -680 2569 26 16 7 chr11 5592214 5592518 -143190954 - AluYb8 SINE Alu -11 307 1 701 177 38 144 chr11 5592518 5592812 -143190660 + L1MC5 LINE L1 7281 7530 -431 702 193 0 0 chr11 5592813 5592932 -143190540 + AluJo/FLAM SINE Alu 2 120 -192 2398 109 3 0 chr11 5592932 5593243 -143190229 - AluSq SINE Alu -1 312 1 860 181 0 0 chr11 5593243 5593376 -143190096 - AluJb SINE Alu -177 135 3 607 197 67 84 chr11 5593401 5593513 -143189959 + L1MC5 LINE L1 7629 7741 -220 1518 219 0 17 chr11 5593513 5593814 -143189658 - AluJb SINE Alu -16 296 1 607 197 67 84 chr11 5593814 5593985 -143189487 + L1MC5 LINE L1 7741 7907 -54 307 68 0 0 chr11 5594491 5594535 -143188937 + AluSc SINE Alu 250 293 -6 576 299 73 17 chr11 5594589 5594823 -143188649 + MIR SINE MIR 2 248 -14 264 189 0 0 chr11 5595272 5595346 -143188126 + CT-rich Low_complexity Low_complexity 2 75 0 2356 101 6 16 chr11 5596574 5596890 -143186582 - AluSq SINE Alu 0 313 1 884 267 50 23 chr11 5596894 5597194 -143186278 + L2 LINE L2 3006 3313 0 1720 56 112 72 chr11 5597959 5598210 -143185262 - AluSq SINE Alu -52 261 1 331 366 50 24 chr11 5598412 5598775 -143184697 + L2 LINE L2 2684 3059 -213 401 329 36 0 chr11 5599774 5599914 -143183558 - L2 LINE L2 -24 3248 3104 241 158 105 66 chr11 5599893 5599969 -143183503 + L2 LINE L2 3231 3309 -4 * 1195 317 113 29 chr11 5600188 5601157 -143182315 + L2 LINE L2 1527 2577 -737 2157 96 4 7 chr11 5601185 5601465 -143182007 - AluSx SINE Alu -16 296 18 668 290 90 30 chr11 5601482 5601987 -143181485 + L2 LINE L2 2772 3313 0 1583 281 152 29 chr11 5601999 5602868 -143180604 - L2 LINE L2 -609 2705 1730 29 47 0 0 chr11 5603518 5603561 -143179911 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 5603856 5603877 -143179595 + GC_rich Low_complexity Low_complexity 1 21 0 529 289 65 9 chr11 5603967 5604178 -143179294 - MIR SINE MIR 0 262 39 1473 157 73 4 chr11 5604487 5604761 -143178711 - AluJo SINE Alu -19 293 1 403 208 33 25 chr11 5604973 5605093 -143178379 - L1MC5 LINE L1 -21 7940 7820 233 250 0 18 chr11 5605196 5605252 -143178220 - L2 LINE L2 -232 3040 2986 189 0 0 0 chr11 5605268 5605289 -143178183 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 774 339 65 20 chr11 5605289 5605618 -143177854 - L2 LINE L2 -5 3267 2954 2152 161 44 53 chr11 5605618 5605799 -143177673 + MSTA LTR MaLR 1 182 -246 2092 112 3 11 chr11 5605799 5606109 -143177363 + AluSq SINE Alu 1 308 0 2152 161 44 53 chr11 5606109 5606284 -143177188 + MSTA LTR MaLR 182 356 -72 2517 87 0 0 chr11 5606284 5606594 -143176878 - AluY SINE Alu -1 310 1 2152 161 44 53 chr11 5606594 5606665 -143176807 + MSTA LTR MaLR 356 426 -2 774 339 65 20 chr11 5606665 5607097 -143176375 - L2 LINE L2 -318 2954 2425 662 203 0 7 chr11 5607949 5608087 -143175385 - FLAM_C SINE Alu -4 139 3 653 319 62 53 chr11 5608119 5608568 -143174904 - L2 LINE L2 -1142 2172 1720 3858 132 18 26 chr11 5608611 5609330 -143174142 + L1MA7 LINE L1 5576 6288 -3 2253 93 0 27 chr11 5609686 5609986 -143173486 - AluSg SINE Alu -18 292 1 1187 284 105 59 chr11 5610079 5610588 -143172884 + MLT1K LTR MaLR 3 540 -48 2020 134 3 3 chr11 5610588 5610880 -143172592 - AluSx SINE Alu -15 297 6 1187 284 105 59 chr11 5610880 5610915 -143172557 + MLT1K LTR MaLR 540 572 -16 276 216 86 60 chr11 5610950 5611066 -143172406 + LTR50 LTR ERVL 17 135 -660 428 258 102 21 chr11 5611244 5611430 -143172042 + LTR33A LTR ERVL 323 523 0 24 0 0 0 chr11 5611679 5611703 -143171769 + AT_rich Low_complexity Low_complexity 1 24 0 1738 171 11 7 chr11 5611703 5611984 -143171488 - AluJo SINE Alu -30 282 1 659 335 47 35 chr11 5612646 5613076 -143170396 + L2 LINE L2 2466 2900 -414 1708 209 8 11 chr11 5613458 5613821 -143169651 + MLT1A1 LTR MaLR 4 365 0 2448 286 114 32 chr11 5617267 5617989 -143165483 + L2 LINE L2 1738 2399 -914 2195 104 10 3 chr11 5617989 5618278 -143165194 - AluSq SINE Alu -22 291 1 2448 286 114 32 chr11 5618278 5618997 -143164475 + L2 LINE L2 2399 3309 -4 2019 161 0 3 chr11 5619121 5619432 -143164040 - AluJb SINE Alu -2 310 1 1213 59 0 0 chr11 5619748 5619884 -143163588 + AluSx SINE Alu 1 136 -177 1298 110 0 0 chr11 5619914 5620100 -143163372 + AluSx SINE Alu 121 306 0 1697 153 67 27 chr11 5620254 5620554 -143162918 - AluJb SINE Alu 0 312 1 193 403 131 14 chr11 5622454 5622873 -143160599 - L2 LINE L2 -1 3271 2804 230 191 0 32 chr11 5623058 5623121 -143160351 + (CCA)n Simple_repeat Simple_repeat 3 63 0 279 114 0 0 chr11 5623625 5623669 -143159803 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 666 345 74 30 chr11 5623671 5624103 -143159369 - L2 LINE L2 -15 3257 2807 289 331 222 3 chr11 5624148 5624459 -143159013 - L2 LINE L2 -897 2417 2039 580 252 60 13 chr11 5624483 5624634 -143158838 - MER91A DNA MER1_type -16 180 23 180 315 18 36 chr11 5624663 5624774 -143158698 - L2 LINE L2 -1287 2027 1919 216 0 0 0 chr11 5625364 5625388 -143158084 + (A)n Simple_repeat Simple_repeat 1 24 0 426 284 226 8 chr11 5626737 5626980 -143156492 + L2 LINE L2 3017 3312 -1 1251 182 13 98 chr11 5629211 5629607 -143153865 + MLT1A1 LTR MaLR 1 362 -3 397 295 85 0 chr11 5629607 5629736 -143153736 - MIR SINE MIR -104 158 19 2096 169 61 2 chr11 5629758 5630167 -143153305 + MER63B DNA MER1_type 2 434 -2 334 322 11 0 chr11 5630192 5630279 -143153193 + L2 LINE L2 3210 3297 -16 2383 95 3 3 chr11 5630488 5630793 -143152679 - AluY SINE Alu -6 305 1 760 309 96 13 chr11 5630955 5631482 -143151990 + L2 LINE L2 2737 3313 0 2508 94 0 0 chr11 5632193 5632500 -143150972 - AluSq SINE Alu -6 307 1 194 338 42 0 chr11 5632724 5632795 -143150677 - L2 LINE L2 -7 3265 3192 537 328 179 33 chr11 5634464 5635370 -143148102 + L2 LINE L2 2233 3272 0 181 107 0 0 chr11 5636462 5636490 -143146982 - L2 LINE L2 0 3272 3245 649 272 96 43 chr11 5636568 5637114 -143146358 - L2 LINE L2 -213 3059 2428 202 368 35 18 chr11 5637736 5637850 -143145622 + L2 LINE L2 2931 3046 -226 431 298 111 17 chr11 5637920 5638101 -143145371 + L2 LINE L2 3111 3308 -5 279 211 293 0 chr11 5638126 5638259 -143145213 + L2 LINE L2 2297 2468 -846 254 178 0 0 chr11 5638374 5638419 -143145053 - L2 LINE L2 -94 3178 3134 203 100 0 25 chr11 5638419 5638459 -143145013 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1999 134 13 39 chr11 5639015 5639321 -143144151 + AluJb SINE Alu 1 298 -14 563 247 147 0 chr11 5640124 5640294 -143143178 - MIR SINE MIR -62 200 6 559 234 60 6 chr11 5691414 5691581 -143091891 + MER104 DNA MER2_type 3 178 -2 473 198 279 10 chr11 5692291 5692488 -143090984 - L1ME4a LINE L1 -15 6106 5857 12397 106 35 51 chr11 5695535 5697524 -143085948 - Tigger1 DNA MER2_type -462 1956 1 544 292 146 13 chr11 5698500 5698980 -143084492 + L2 LINE L2 2683 3220 -93 287 240 55 110 chr11 5698998 5699079 -143084393 + MIR SINE MIR 11 82 -180 1933 155 0 19 chr11 5699079 5699395 -143084077 - AluJb SINE Alu -2 310 1 287 240 55 110 chr11 5699395 5699459 -143084013 + MIR SINE MIR 82 148 -114 867 153 0 8 chr11 5699460 5699591 -143083881 + FLAM_A SINE Alu 2 131 -2 2401 97 0 0 chr11 5699608 5699918 -143083554 + AluSg SINE Alu 1 310 0 27 62 0 0 chr11 5699920 5699968 -143083504 + AT_rich Low_complexity Low_complexity 1 48 0 318 268 134 0 chr11 5699968 5700080 -143083392 + MIR SINE MIR 136 262 0 232 268 24 0 chr11 5700626 5700708 -143082764 - L2 LINE L2 -2914 400 317 661 270 68 89 chr11 5700809 5701275 -143082197 + L2 LINE L2 2736 3210 -103 613 114 19 19 chr11 5701275 5701380 -143082092 + L1MA4A LINE L1 6188 6292 -11 661 270 68 89 chr11 5701380 5701395 -143082077 + L2 LINE L2 3210 3224 -89 2232 103 3 3 chr11 5701395 5701696 -143081776 + AluSx SINE Alu 7 307 -5 661 270 68 89 chr11 5701696 5701804 -143081668 + L2 LINE L2 3224 3313 0 609 233 31 146 chr11 5702214 5702500 -143080972 - MER102a DNA MER1_type -1087 330 83 2298 101 0 7 chr11 5702500 5702796 -143080676 - AluSq SINE Alu -19 294 1 609 233 31 146 chr11 5702796 5702831 -143080641 - MER102a DNA MER1_type -1334 83 46 198 305 92 28 chr11 5703011 5703152 -143080320 + MIR SINE MIR 112 261 -1 2447 50 0 7 chr11 5704645 5704928 -143078544 - AluY SINE Alu -30 281 1 349 310 25 49 chr11 5705034 5705237 -143078235 + L2 LINE L2 3062 3259 -54 1167 268 29 20 chr11 5705617 5705960 -143077512 - L1ME3 LINE L1 0 6162 5817 491 252 37 7 chr11 5706332 5706467 -143077005 + MIR SINE MIR 15 153 -109 579 313 89 11 chr11 5706721 5707002 -143076470 + L2 LINE L2 2553 2855 -459 454 306 16 107 chr11 5707037 5707422 -143076050 + L2 LINE L2 2888 3237 -35 1000 295 212 33 chr11 5707454 5707916 -143075556 - L2 LINE L2 -8 3305 2927 1806 166 3 14 chr11 5707916 5708212 -143075260 + AluJo SINE Alu 1 293 -19 1000 295 212 33 chr11 5708212 5708434 -143075038 - L2 LINE L2 -386 2927 2746 853 165 0 0 chr11 5708434 5708567 -143074905 + FLAM_C SINE Alu 1 133 0 1000 295 212 33 chr11 5708567 5709199 -143074273 - L2 LINE L2 -567 2746 1747 378 0 0 0 chr11 5709287 5709329 -143074143 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 510 104 13 0 chr11 5709534 5709611 -143073861 + L1PA15 LINE L1 6082 6159 -6 1795 152 7 11 chr11 5710683 5710952 -143072520 + AluJo SINE Alu 1 268 -44 213 39 0 0 chr11 5711845 5711871 -143071601 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 306 198 74 12 chr11 5711871 5711952 -143071520 - MLT1L LTR MaLR -93 522 437 451 292 38 52 chr11 5712048 5712297 -143071175 - MLT1L LTR MaLR -199 416 109 241 222 0 37 chr11 5712399 5712453 -143071019 - MLT1K LTR MaLR -200 388 337 308 324 105 32 chr11 5712502 5713129 -143070343 - HAL1b LINE L1 -614 734 62 2195 113 7 0 chr11 5713335 5713627 -143069845 - AluSq SINE Alu -19 294 1 13746 160 13 4 chr11 5713627 5715822 -143067650 - L1M1 LINE L1 -5106 2459 245 1994 218 59 49 chr11 5715826 5715946 -143067526 + L1M4 LINE L1 2933 3050 -3096 2374 83 0 32 chr11 5715946 5716260 -143067212 + AluSx SINE Alu 1 304 -8 1994 218 59 49 chr11 5716260 5716711 -143066761 + L1M4 LINE L1 3050 3515 -2631 414 0 0 0 chr11 5716711 5716757 -143066715 + (CA)n Simple_repeat Simple_repeat 1 46 0 1994 218 59 49 chr11 5716757 5716877 -143066595 + L1M4 LINE L1 3515 3632 -2514 294 95 0 0 chr11 5716878 5716920 -143066552 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1416 199 0 31 chr11 5716944 5717230 -143066242 - AluJo SINE Alu 0 312 36 326 361 57 0 chr11 5717254 5717412 -143066060 - L1M4 LINE L1 -529 5655 5489 703 182 42 0 chr11 5717436 5717579 -143065893 + MIR SINE MIR 21 169 -93 987 118 0 0 chr11 5718177 5718312 -143065160 - AluSq/x SINE Alu -174 139 5 365 313 68 11 chr11 5718316 5718492 -143064980 + L2 LINE L2 3128 3313 0 943 176 140 0 chr11 5718671 5718864 -143064608 - MLT1A1 LTR MaLR 0 365 146 729 137 11 0 chr11 5718866 5719047 -143064425 - L1MA9 LINE L1 -17 6295 6017 * 2012 116 9 19 chr11 5719046 5719365 -143064107 + L1MA9 LINE L1 5604 5919 -393 835 176 0 13 chr11 5719381 5719534 -143063938 - MLT1A1 LTR MaLR -214 151 1 462 254 9 0 chr11 5719653 5719767 -143063705 - HAL1 LINE L1 -815 1692 1578 1833 137 29 11 chr11 5719785 5720062 -143063410 - AluJb SINE Alu -26 286 5 301 339 39 8 chr11 5720223 5720350 -143063122 - L2 LINE L2 0 3272 3142 273 315 83 0 chr11 5722834 5722942 -143060530 + MIR SINE MIR 120 236 -26 400 271 44 35 chr11 5723169 5723372 -143060100 + L1MC4 LINE L1 7820 8024 -18 1708 182 55 0 chr11 5723430 5723721 -143059751 - AluJo SINE Alu -5 307 1 988 60 0 0 chr11 5723767 5723900 -143059572 - L1P4 LINE L1 -729 5432 5300 585 168 36 15 chr11 5724011 5724148 -143059324 - L1MA3 LINE L1 -255 6050 5911 4654 201 127 13 chr11 5724149 5725569 -143057903 - MER52A LTR ERV1 0 1755 1 13546 159 17 18 chr11 5725569 5726189 -143057283 - L1MA3 LINE L1 -392 5913 5294 2035 129 13 29 chr11 5726189 5726500 -143056972 - AluSx SINE Alu -6 306 1 2111 125 0 42 chr11 5726504 5726815 -143056657 - AluSq SINE Alu -15 298 1 13546 159 17 18 chr11 5726815 5729739 -143053733 - L1MA3 LINE L1 -1014 5291 2316 588 284 48 52 chr11 5732447 5732697 -143050775 + MIR SINE MIR 6 254 -8 211 301 108 52 chr11 5732783 5732996 -143050476 - L2 LINE L2 -220 3052 2828 197 222 122 56 chr11 5733223 5733313 -143050159 - MIR SINE MIR -148 114 19 * 735 361 138 7 chr11 5733297 5734017 -143049455 - L2 LINE L2 -681 2633 1820 221 320 0 13 chr11 5734429 5734507 -143048965 + L2 LINE L2 290 366 -2948 346 135 0 0 chr11 5734511 5734563 -143048909 - MIR SINE MIR -28 234 183 2423 96 0 19 chr11 5734582 5734896 -143048576 - AluSx SINE Alu -2 310 3 462 298 186 34 chr11 5734922 5735368 -143048104 + L2 LINE L2 386 899 -2415 294 243 68 0 chr11 5735437 5735511 -143047961 + L2 LINE L2 2605 2683 -631 567 275 39 45 chr11 5735651 5735985 -143047487 + L1ME4a LINE L1 5518 5849 -272 5357 232 47 32 chr11 5736066 5736659 -143046813 - L1M4 LINE L1 -1278 4868 4285 2221 110 0 7 chr11 5736659 5736960 -143046512 - AluSc SINE Alu -10 299 1 5357 232 47 32 chr11 5736960 5738157 -143045315 - L1M4 LINE L1 -1861 4285 3051 483 171 0 0 chr11 5738161 5738237 -143045235 - FLAM SINE Alu -16 127 52 859 272 90 63 chr11 5738250 5738885 -143044587 - L1MEc LINE L1 -4337 2059 1408 612 262 42 6 chr11 5738905 5739073 -143044399 - MLT1J2 LTR MaLR -276 174 1 1970 122 37 17 chr11 5739489 5739785 -143043687 - AluSg SINE Alu -8 302 1 253 204 54 21 chr11 5740141 5740234 -143043238 + L1ME LINE L1 5756 5851 -313 226 213 126 63 chr11 5740305 5740432 -143043040 + LTR50 LTR ERVL 23 157 -638 541 293 40 5 chr11 5740711 5740933 -143042539 + LTR33A LTR ERVL 292 521 -2 210 87 65 0 chr11 5742162 5742208 -143041264 + (TA)n Simple_repeat Simple_repeat 2 50 0 927 206 25 0 chr11 5742209 5742369 -143041103 - FRAM SINE Alu -2 164 1 582 287 141 23 chr11 5742939 5743329 -143040143 - MLT1J2 LTR MaLR -14 436 1 915 278 72 31 chr11 5743380 5743729 -143039743 - L2 LINE L2 -337 2977 2615 385 205 0 24 chr11 5744460 5744543 -143038929 + L2 LINE L2 1354 1434 -1880 247 233 96 14 chr11 5745222 5745295 -143038177 - L2 LINE L2 -45 3227 3149 205 284 49 107 chr11 5745536 5745761 -143037711 - L2 LINE L2 -458 2856 2645 875 239 0 0 chr11 5745970 5746146 -143037326 - FRAM SINE Alu -2 174 1 967 303 130 23 chr11 5746146 5746661 -143036811 - L2 LINE L2 -954 2360 1791 431 279 38 94 chr11 5747104 5747391 -143036081 - L2 LINE L2 -7 3265 2995 224 0 0 61 chr11 5747545 5747578 -143035894 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 200 400 24 0 chr11 5747579 5747704 -143035768 + L2 LINE L2 2415 2542 -772 266 271 132 78 chr11 5747712 5747841 -143035631 + MIR3 SINE MIR 38 173 -35 278 300 0 0 chr11 5748168 5748238 -143035234 + L2 LINE L2 3197 3266 -6 257 283 261 7 chr11 5748294 5748432 -143035040 + L3 LINE CR1 1314 1486 -91 214 120 20 60 chr11 5748935 5748985 -143034487 + G-rich Low_complexity Low_complexity 3 50 0 26 82 0 0 chr11 5749444 5749505 -143033967 + GC_rich Low_complexity Low_complexity 1 61 0 213 237 0 41 chr11 5749585 5749682 -143033790 + C-rich Low_complexity Low_complexity 2 94 0 404 203 175 68 chr11 5750226 5750403 -143033069 - MIR SINE MIR -17 245 50 783 284 50 67 chr11 5751102 5751256 -143032216 + L2 LINE L2 2864 3019 -253 2391 58 0 32 chr11 5751256 5751565 -143031907 - AluY SINE Alu -12 299 1 783 284 50 67 chr11 5751565 5751826 -143031646 + L2 LINE L2 3019 3272 0 474 248 67 0 chr11 5756278 5756383 -143027089 - L2 LINE L2 -3 3310 3199 256 313 36 18 chr11 5758133 5758245 -143025227 - MIR SINE MIR -40 222 109 296 351 90 45 chr11 5759037 5759325 -143024147 + L2 LINE L2 1138 1438 -1876 206 300 58 4 chr11 5759405 5759476 -143023996 - MIR SINE MIR -133 75 3 296 286 101 8 chr11 5759485 5759604 -143023868 - MIR SINE MIR -10 252 123 2425 73 0 17 chr11 5759666 5759968 -143023504 - AluSg SINE Alu -13 297 1 188 329 14 14 chr11 5760280 5760350 -143023122 - MIR SINE MIR -173 89 20 1700 302 220 45 chr11 5760829 5762859 -143020613 + L2 LINE L2 665 3061 -211 2164 119 47 39 chr11 5763954 5764315 -143019157 - THE1B LTR MaLR 0 364 1 451 260 67 0 chr11 5765068 5765172 -143018300 + L2 LINE L2 3197 3307 -6 1793 134 28 14 chr11 5765503 5765794 -143017678 - AluSq SINE Alu -14 299 5 30 0 0 0 chr11 5765867 5765897 -143017575 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 5766016 5766037 -143017435 + (A)n Simple_repeat Simple_repeat 1 21 0 2266 99 3 7 chr11 5766041 5766345 -143017127 + AluSx SINE Alu 1 303 -9 359 279 108 29 chr11 5766348 5766588 -143016884 + L2 LINE L2 2033 2291 -1023 463 298 159 5 chr11 5767704 5767912 -143015560 - MIR SINE MIR -14 248 9 189 121 0 0 chr11 5770242 5770275 -143013197 + (CA)n Simple_repeat Simple_repeat 2 34 0 321 282 17 43 chr11 5770998 5771115 -143012357 - L2 LINE L2 -569 2745 2632 294 309 178 25 chr11 5771368 5771715 -143011757 + L2 LINE L2 2649 3057 -215 34 24 0 0 chr11 5772175 5772216 -143011256 + GC_rich Low_complexity Low_complexity 1 41 0 1119 288 168 42 chr11 5772917 5773940 -143009532 - L2 LINE L2 -209 3063 1916 1229 129 5 5 chr11 5773951 5774145 -143009327 - L1PA13 LINE L1 -14 6149 5956 2484 73 3 0 chr11 5774328 5774629 -143008843 + AluSg SINE Alu 1 302 -8 234 296 144 8 chr11 5776272 5776404 -143007068 - L2 LINE L2 -1003 2311 2162 206 290 194 11 chr11 5779454 5779547 -143003925 + MIR SINE MIR 20 129 -79 38 61 0 0 chr11 5780541 5780607 -143002865 + GC_rich Low_complexity Low_complexity 1 66 0 221 393 76 7 chr11 5781211 5781356 -143002116 - L2 LINE L2 -12 3260 3106 294 357 104 0 chr11 5781412 5781594 -143001878 - MIR SINE MIR -10 252 52 209 373 59 0 chr11 5781989 5782091 -143001381 - L2 LINE L2 -709 2605 2498 185 332 82 29 chr11 5782094 5782302 -143001170 - L2 LINE L2 -775 2539 2321 202 370 28 19 chr11 5786971 5787079 -142996393 - MIR SINE MIR -140 122 14 289 273 45 36 chr11 5788110 5788220 -142995252 + MIR SINE MIR 73 183 -79 286 343 82 40 chr11 5788673 5789151 -142994321 + L2 LINE L2 479 976 -2338 1432 233 110 21 chr11 5796278 5796812 -142986660 + Charlie1 DNA MER1_type 15 2761 0 487 261 0 49 chr11 5797478 5797620 -142985852 + MIR3 SINE MIR 9 143 -65 2578 179 31 17 chr11 5802894 5803414 -142980058 + MER82 DNA MER2_type 98 624 -29 239 267 0 0 chr11 5803672 5803732 -142979740 + L2 LINE L2 3254 3313 0 323 318 189 43 chr11 5804611 5804627 -142978845 + L2 LINE L2 1992 2004 -1310 1847 158 13 0 chr11 5804627 5804930 -142978542 - AluJo SINE Alu -5 307 1 792 167 8 0 chr11 5804930 5805056 -142978416 - FLAM_A SINE Alu -3 130 4 323 318 189 43 chr11 5805056 5805595 -142977877 + L2 LINE L2 2003 2629 -685 1194 174 38 9 chr11 5805630 5805843 -142977629 - MER20 DNA MER1_type 0 219 1 540 362 111 15 chr11 5805924 5806330 -142977142 + L2 LINE L2 2827 3271 -1 318 287 119 21 chr11 5806676 5806819 -142976653 + L2 LINE L2 2617 2773 -541 305 341 125 0 chr11 5807024 5807200 -142976272 + L2 LINE L2 3075 3272 0 1708 76 9 0 chr11 5807324 5807547 -142975925 + AluY SINE Alu 74 298 -13 240 111 0 0 chr11 5809933 5809969 -142973503 + (CAG)n Simple_repeat Simple_repeat 1 36 0 675 306 90 73 chr11 5810668 5811499 -142971973 - L2 LINE L2 -5 3267 2407 586 336 147 38 chr11 5811726 5812612 -142970860 + L2 LINE L2 1799 2780 -534 282 318 114 15 chr11 5812991 5813123 -142970349 + L2 LINE L2 3125 3269 -3 205 306 56 0 chr11 5813440 5813512 -142969960 + MIR SINE MIR 113 188 -74 281 305 13 7 chr11 5814431 5814585 -142968887 + (CA)n Simple_repeat Simple_repeat 2 156 0 511 298 61 15 chr11 5815967 5816170 -142967302 - MIR SINE MIR -13 249 40 631 321 154 16 chr11 5816503 5816952 -142966520 - L2 LINE L2 -981 2333 1823 772 226 179 0 chr11 5817054 5817266 -142966206 + MIR SINE MIR 2 251 -11 674 275 72 13 chr11 5817281 5817517 -142965955 + MIR SINE MIR 7 256 -6 207 135 0 27 chr11 5817562 5817599 -142965873 - MIR SINE MIR -64 144 109 407 312 18 0 chr11 5817986 5818095 -142965377 - L2 LINE L2 -6 3307 3197 245 288 50 0 chr11 5818394 5818474 -142964998 - MIR SINE MIR -77 185 102 212 83 0 28 chr11 5818529 5818565 -142964907 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 1243 332 112 49 chr11 5819483 5821215 -142962257 - L2 LINE L2 -41 3231 1376 767 314 134 21 chr11 5821174 5821934 -142961538 + L2 LINE L2 2427 3272 0 * 192 335 109 48 chr11 5822129 5822523 -142960949 - L2 LINE L2 -2227 1087 670 212 98 0 24 chr11 5823925 5823966 -142959506 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1334 162 37 26 chr11 5824255 5824643 -142958829 - L1M2 LINE L1 -743 5548 5160 1047 220 0 8 chr11 5824640 5824876 -142958596 - L1M2 LINE L1 -2267 3879 3646 * 5023 61 2 0 chr11 5824947 5825566 -142957906 - L1PA6 LINE L1 0 6154 5535 23 54 0 0 chr11 5825715 5825752 -142957720 + AT_rich Low_complexity Low_complexity 1 37 0 498 204 32 83 chr11 5826091 5826248 -142957224 - L1ME3A LINE L1 -3 6167 6019 870 215 158 13 chr11 5826435 5826663 -142956809 - MIR SINE MIR 0 262 2 220 272 150 45 chr11 5826828 5827074 -142956398 + L2 LINE L2 2219 2490 -824 309 316 12 37 chr11 5827582 5827976 -142955496 + GA-rich Low_complexity Low_complexity 1 384 0 * 326 300 18 41 chr11 5827848 5828018 -142955454 + G-rich Low_complexity Low_complexity 3 168 0 3285 70 2 4 chr11 5828123 5828596 -142954876 - L1P LINE L1 -987 5159 4688 720 324 71 32 chr11 5828606 5828846 -142954626 - LTR16C LTR ERVL 0 491 227 2054 162 75 15 chr11 5828846 5829248 -142954224 - MSTB LTR MaLR 0 426 1 720 324 71 32 chr11 5829248 5829414 -142954058 - LTR16C LTR ERVL -264 227 69 6587 64 26 0 chr11 5830096 5831651 -142951821 + L1PA7 LINE L1 4562 6148 -6 958 251 16 4 chr11 5831658 5831905 -142951567 + L1ME3A LINE L1 5574 5823 -347 1665 124 16 8 chr11 5831910 5832159 -142951313 + AluSg SINE Alu 1 251 -59 550 51 0 0 chr11 5832173 5832251 -142951221 + L1P LINE L1 4735 4812 -1334 235 122 82 0 chr11 5832256 5832305 -142951167 + AluSg SINE Alu 248 300 -2 887 254 46 37 chr11 5832305 5832655 -142950817 + L1ME3A LINE L1 5814 6166 -4 2139 186 60 4 chr11 5832733 5833200 -142950272 + MLT1D LTR MaLR 13 505 0 207 240 100 0 chr11 5833225 5833275 -142950197 + L2 LINE L2 3217 3271 -1 225 0 0 0 chr11 5835042 5835067 -142948405 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 870 95 44 0 chr11 5835092 5835229 -142948243 - L1MA3 LINE L1 -18 6287 6145 348 279 130 39 chr11 5835363 5835747 -142947725 + L1ME4a LINE L1 5672 6090 -31 974 181 46 3 chr11 5835893 5836096 -142947376 + MER20 DNA MER1_type 2 214 -5 838 201 11 11 chr11 5836861 5837040 -142946432 + MER66B LTR ERV1 1 179 -307 284 219 7 117 chr11 5837038 5837175 -142946297 + MER66B LTR ERV1 294 415 -71 * 8365 251 44 24 chr11 5837213 5840422 -142943050 + MER66-int LTR ERV1 1210 4225 -3531 1050 81 0 0 chr11 5840422 5840571 -142942901 - THE1B-int LTR MaLR -1431 149 1 2159 140 19 25 chr11 5840572 5840937 -142942535 - THE1B LTR MaLR -1 363 1 2340 93 0 3 chr11 5840988 5841289 -142942183 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 5842521 5842542 -142940930 + AT_rich Low_complexity Low_complexity 1 21 0 185 265 88 39 chr11 5844350 5844452 -142939020 + MIR SINE MIR 37 143 -119 793 275 16 0 chr11 5844497 5844685 -142938787 - MLT1E LTR MaLR -4 589 399 502 268 30 45 chr11 5844685 5844883 -142938589 + MLT1A1 LTR MaLR 2 196 -169 2166 227 85 5 chr11 5845491 5846067 -142937405 - MER92B LTR ERV1 0 636 15 209 330 137 30 chr11 5846124 5846357 -142937115 - L2 LINE L2 -189 3083 2826 410 318 81 38 chr11 5846957 5847218 -142936254 + L2 LINE L2 3029 3300 -13 2073 101 35 0 chr11 5847221 5847507 -142935965 + AluSq SINE Alu 1 296 -17 977 264 49 0 chr11 5848477 5848806 -142934666 - L1ME3A LINE L1 -208 5962 5618 4971 110 10 0 chr11 5848893 5849577 -142933895 - LTR8 LTR ERV1 0 691 1 244 178 56 22 chr11 5849855 5849945 -142933527 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 269 256 41 72 chr11 5850140 5850335 -142933137 - HAL1 LINE L1 -1166 1341 1153 2390 100 0 0 chr11 5850573 5850884 -142932588 - AluSx SINE Alu -1 311 1 250 227 120 0 chr11 5851000 5851075 -142932397 + MER5B DNA MER1_type 90 173 -5 2220 130 0 3 chr11 5852121 5852428 -142931044 + AluSq SINE Alu 1 306 -7 2128 114 0 3 chr11 5853540 5853837 -142929635 - AluSx SINE Alu -15 297 2 210 321 0 0 chr11 5854294 5854350 -142929122 - MIR SINE MIR -3 259 204 1717 212 62 58 chr11 5854441 5854960 -142928512 + MLT1E3 LTR MaLR 102 622 -2 1254 261 136 8 chr11 5854962 5855446 -142928026 + MLT1E-int LTR MaLR 1 602 -769 338 313 60 6 chr11 5855644 5855826 -142927646 + MLT1E-int LTR MaLR 696 887 -484 402 260 40 121 chr11 5856178 5856442 -142927030 + MLT1E-int LTR MaLR 1074 1309 -62 2006 138 65 6 chr11 5856442 5856796 -142926676 - THE1C LTR MaLR 0 375 1 402 260 40 121 chr11 5856796 5856854 -142926618 + MLT1E-int LTR MaLR 1309 1370 -1 1825 247 50 60 chr11 5856855 5857262 -142926210 + MLT1E LTR MaLR 1 402 -191 1130 219 75 64 chr11 5857262 5857623 -142925849 - MLT1A1 LTR MaLR 0 365 1 1825 247 50 60 chr11 5857623 5857814 -142925658 + MLT1E LTR MaLR 402 593 0 186 313 50 12 chr11 5857885 5857965 -142925507 - MIR SINE MIR -92 116 34 20611 30 3 0 chr11 5858361 5861619 -142921853 - L1PA4 LINE L1 -1 6154 2890 2283 120 0 0 chr11 5861894 5862203 -142921269 - AluSx SINE Alu -3 309 1 196 333 67 50 chr11 5863039 5863159 -142920313 - L2 LINE L2 -41 3231 3110 642 216 93 86 chr11 5863159 5863483 -142919989 + MER63B DNA MER1_type 6 331 -105 311 194 0 0 chr11 5863556 5863623 -142919849 + L1M4 LINE L1 5007 5073 -1073 5807 218 37 35 chr11 5863638 5864366 -142919106 - L1 LINE L1 -2977 3351 2626 2237 167 44 12 chr11 5864366 5864779 -142918693 + MSTB LTR MaLR 1 426 0 5807 218 37 35 chr11 5864779 5866119 -142917353 - L1 LINE L1 -3702 2626 1308 1709 183 3 7 chr11 5866119 5866414 -142917058 - AluJo SINE Alu -14 298 5 5807 218 37 35 chr11 5866414 5867723 -142915749 - L1 LINE L1 -5020 1308 2 266 303 48 7 chr11 5867729 5867874 -142915598 - L1MEc LINE L1 -4734 1662 1512 861 217 135 70 chr11 5868307 5868648 -142914824 - MLT1A1 LTR MaLR 0 365 3 22 0 0 0 chr11 5869254 5869276 -142914196 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 5876728 5876750 -142906722 + AT_rich Low_complexity Low_complexity 1 22 0 1532 126 40 0 chr11 5876873 5877095 -142906377 - AluSx SINE Alu -81 231 1 2129 126 3 0 chr11 5877600 5877902 -142905570 + AluSx SINE Alu 1 303 -9 7729 58 7 3 chr11 5878597 5879541 -142903931 - LTR13 LTR ERVK 0 1007 60 691 93 39 62 chr11 5879523 5879652 -142903820 - LTR13 LTR ERVK -881 126 1 * 2349 127 9 76 chr11 5879726 5879767 -142903705 + L1MA5 LINE L1 5876 5918 -382 2180 121 0 10 chr11 5879767 5880074 -142903398 + AluSx SINE Alu 1 304 -8 2349 127 9 76 chr11 5880074 5880422 -142903050 + L1MA5 LINE L1 5918 6234 -66 2193 99 26 118 chr11 5880422 5880835 -142902637 + L1PA12 LINE L1 5784 6161 -7 2349 127 9 76 chr11 5880835 5880892 -142902580 + L1MA5 LINE L1 6234 6293 -7 2418 71 0 10 chr11 5881328 5881623 -142901849 - AluSg SINE Alu -18 292 1 413 109 29 196 chr11 5882023 5882080 -142901392 + L1MA7 LINE L1 5917 5939 -352 2079 130 7 0 chr11 5882080 5882388 -142901084 + AluSx SINE Alu 1 310 -2 413 109 29 196 chr11 5882388 5882468 -142901004 + L1MA7 LINE L1 5939 6031 -260 402 262 179 24 chr11 5882555 5882723 -142900749 + MIR SINE MIR 37 230 -32 2219 103 20 3 chr11 5882905 5883206 -142900266 - AluSx SINE Alu -6 306 1 1003 305 89 10 chr11 5883599 5884015 -142899457 + LTR16A LTR ERVL 1 449 -1 966 214 68 19 chr11 5884971 5885177 -142898295 - MER20 DNA MER1_type -3 216 1 379 216 166 0 chr11 5885257 5885396 -142898076 - HAL1b LINE L1 -1 1347 1186 2383 89 0 0 chr11 5885497 5885790 -142897682 - AluSx SINE Alu -19 293 1 1474 77 6 0 chr11 5885971 5886152 -142897320 + AluSg/x SINE Alu 108 289 -21 921 147 96 189 chr11 5886299 5886632 -142896840 + AluSq SINE Alu 2 303 0 186 322 122 0 chr11 5886639 5886754 -142896718 + L2 LINE L2 3139 3267 -5 230 322 0 0 chr11 5888149 5888208 -142895264 - L2 LINE L2 -3 3269 3211 2059 165 75 71 chr11 5888222 5888713 -142894759 - MLT1D LTR MaLR 0 505 13 2805 245 65 26 chr11 5888783 5889684 -142893788 - L1ME3A LINE L1 0 6170 5238 548 229 41 46 chr11 5889749 5889967 -142893505 - Charlie2 DNA MER1_type -489 2373 2157 * 2296 269 60 95 chr11 5889961 5890391 -142893081 - Charlie2b DNA MER1_type -1512 1270 826 2152 125 0 13 chr11 5890391 5890703 -142892769 + AluSx SINE Alu 1 308 -4 2296 269 60 95 chr11 5890703 5891582 -142891890 - Charlie2b DNA MER1_type -1956 826 7 200 204 0 23 chr11 5891590 5891634 -142891838 + L2 LINE L2 3191 3233 -80 1974 95 12 0 chr11 5891640 5891892 -142891580 - AluSg SINE Alu -55 255 1 670 250 133 0 chr11 5891912 5892100 -142891372 + LTR33 LTR ERVL 1 213 -308 429 259 19 14 chr11 5892154 5892314 -142891158 + LTR33 LTR ERVL 319 513 -8 319 273 55 27 chr11 5892363 5892473 -142890999 + L2 LINE L2 2585 2697 -617 1770 118 0 0 chr11 5892474 5892720 -142890752 - Tigger3(Golem) DNA MER2_type -1 3028 2783 189 0 0 0 chr11 5892720 5892741 -142890731 + (T)n Simple_repeat Simple_repeat 1 21 0 1165 174 0 54 chr11 5892753 5892977 -142890495 - AluJo SINE Alu -100 212 1 540 332 78 27 chr11 5893061 5893436 -142890036 + L2 LINE L2 2699 3080 -192 2346 103 3 6 chr11 5893626 5893938 -142889534 + AluSq SINE Alu 1 311 -2 676 188 38 0 chr11 5894108 5894241 -142889231 + Charlie4 DNA MER1_type 17 154 -1807 540 202 118 45 chr11 5894260 5894438 -142889034 + Charlie4 DNA MER1_type 1770 1960 -1 1993 157 0 0 chr11 5894862 5895156 -142888316 + AluJo SINE Alu 1 294 -18 1365 211 33 15 chr11 5896336 5896673 -142886799 + MER97b DNA MER1_type? 1 343 -710 258 105 0 0 chr11 5896695 5896733 -142886739 + (T)n Simple_repeat Simple_repeat 1 38 0 4245 96 5 17 chr11 5896734 5897327 -142886145 - LTR8 LTR ERV1 -105 586 1 34778 103 86 73 chr11 5897327 5897789 -142885683 - HUERS-P1 LTR ERV1 0 6263 5808 1101 15 8 8 chr11 5897789 5897923 -142885549 - AluY SINE Alu -4 307 174 34778 103 86 73 chr11 5897923 5900073 -142883399 - HUERS-P1 LTR ERV1 -455 5808 3687 2903 16 0 0 chr11 5900073 5900414 -142883058 + SVA Other Other 1061 1401 0 34778 103 86 73 chr11 5900414 5900886 -142882586 - HUERS-P1 LTR ERV1 -2576 3687 3222 2342 100 0 0 chr11 5900886 5901186 -142882286 - AluY SINE Alu -11 300 1 34778 103 86 73 chr11 5901186 5902923 -142880549 - HUERS-P1 LTR ERV1 -3041 3222 1210 405 102 0 0 chr11 5902923 5902982 -142880490 + (CA)n Simple_repeat Simple_repeat 2 60 0 34778 103 86 73 chr11 5902982 5904208 -142879264 - HUERS-P1 LTR ERV1 -5053 1210 1 990 95 0 0 chr11 5904208 5904334 -142879138 - LTR8 LTR ERV1 0 691 566 551 195 18 26 chr11 5904348 5904461 -142879011 + MER97a DNA MER1_type? 393 504 -390 2395 68 0 10 chr11 5905502 5905795 -142877677 + AluSq SINE Alu 1 290 -23 1034 242 25 39 chr11 5906125 5906410 -142877062 - MLT1C LTR MaLR 0 467 187 2466 70 3 0 chr11 5906459 5906760 -142876712 - AluSx SINE Alu -10 302 1 209 200 0 0 chr11 5906760 5906800 -142876672 + (TATG)n Simple_repeat Simple_repeat 3 42 0 896 111 11 99 chr11 5906808 5906989 -142876483 - MLT1C LTR MaLR -302 165 1 335 272 183 27 chr11 5907044 5907268 -142876204 + MER97c DNA MER1_type? 767 1025 -65 27 29 0 0 chr11 5909082 5909116 -142874356 + AT_rich Low_complexity Low_complexity 1 34 0 2411 79 0 0 chr11 5910725 5911017 -142872455 + AluY SINE Alu 2 293 -18 187 208 113 0 chr11 5911368 5911421 -142872051 + L2 LINE L2 2584 2642 -672 2625 18 0 0 chr11 5912007 5912292 -142871180 + L1PA2 LINE L1 5871 6155 0 681 264 77 4 chr11 5912457 5912692 -142870780 + MER112 DNA MER1_type 2 253 -7 323 353 131 31 chr11 5912707 5913181 -142870291 + L2 LINE L2 2743 3266 -6 4551 160 43 46 chr11 5913584 5914779 -142868693 - L1MA9 LINE L1 -233 6079 4882 1704 175 7 14 chr11 5914779 5915076 -142868396 + AluJb SINE Alu 5 299 -13 4551 160 43 46 chr11 5915076 5915507 -142867965 - L1MA9 LINE L1 -1430 4882 4477 573 27 55 0 chr11 5915507 5915580 -142867892 - L1PA4 LINE L1 -1 6154 6078 4551 160 43 46 chr11 5915580 5915703 -142867769 - L1MA9 LINE L1 -1835 4477 4355 221 345 97 0 chr11 5915767 5915880 -142867592 + L2 LINE L2 3149 3272 0 1573 101 0 0 chr11 5916144 5916343 -142867129 - AluSq SINE Alu -114 199 1 207 114 0 0 chr11 5916512 5916547 -142866925 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 314 89 8 chr11 5916837 5917013 -142866459 - L2 LINE L2 -939 2375 2146 498 355 80 60 chr11 5917424 5918314 -142865158 - L2 LINE L2 -341 2973 2066 186 300 40 0 chr11 5918399 5918449 -142865023 + L2 LINE L2 3123 3174 -98 213 39 0 0 chr11 5919061 5919087 -142864385 + (A)n Simple_repeat Simple_repeat 1 26 0 2201 122 26 0 chr11 5919976 5920157 -142863315 - AluSx SINE Alu 0 312 118 282 29 0 0 chr11 5920157 5920192 -142863280 + (TG)n Simple_repeat Simple_repeat 2 36 0 2201 122 26 0 chr11 5920192 5920314 -142863158 - AluSx SINE Alu -194 118 1 3118 208 43 43 chr11 5920914 5921732 -142861740 + L1M4 LINE L1 3617 4434 -1712 271 238 105 29 chr11 5921935 5922040 -142861432 - MIR SINE MIR -114 148 36 218 333 14 14 chr11 5922096 5922168 -142861304 + L2 LINE L2 352 423 -2891 383 245 128 0 chr11 5922451 5922553 -142860919 - L2 LINE L2 0 3313 3199 227 356 52 17 chr11 5922557 5922672 -142860800 - L2 LINE L2 -15 3257 3139 800 216 167 39 chr11 5922848 5923130 -142860342 - L2 LINE L2 0 3313 2996 445 147 13 0 chr11 5924123 5924198 -142859274 - LTR33A LTR ERVL -1 522 447 2030 135 6 25 chr11 5924219 5924537 -142858935 + AluSx SINE Alu 1 312 0 430 219 76 90 chr11 5924537 5924641 -142858831 - LTR50 LTR ERVL -184 611 507 1762 178 7 0 chr11 5924641 5924945 -142858527 + AluJo SINE Alu 1 306 -6 430 219 76 90 chr11 5924945 5925020 -142858452 - LTR50 LTR ERVL -288 507 349 2235 120 3 0 chr11 5925023 5925323 -142858149 + AluSp SINE Alu 1 301 -12 737 266 145 0 chr11 5925326 5925567 -142857905 - LTR50 LTR ERVL -517 278 3 674 289 69 24 chr11 5925690 5925936 -142857536 + MIR SINE MIR 4 260 -2 1595 178 45 20 chr11 5925995 5926287 -142857185 + AluJb SINE Alu 1 299 -13 336 291 58 0 chr11 5926345 5926448 -142857024 + L3 LINE CR1 1270 1378 -199 309 298 0 43 chr11 5926647 5926788 -142856684 + GA-rich Low_complexity Low_complexity 1 135 0 2292 114 7 3 chr11 5927211 5927519 -142855953 - AluSx SINE Alu -3 309 1 731 309 73 36 chr11 5929302 5929632 -142853840 + L2 LINE L2 2542 2883 -431 369 331 59 52 chr11 5930430 5930720 -142852752 + L2 LINE L2 2932 3223 -49 222 37 0 0 chr11 5932050 5932077 -142851395 + (CAGCC)n Simple_repeat Simple_repeat 2 28 0 1082 284 39 70 chr11 5933048 5933253 -142850219 + L2 LINE L2 2834 3044 -269 2213 96 0 0 chr11 5933253 5933546 -142849926 - AluSg SINE Alu -17 293 1 1082 284 39 70 chr11 5933546 5933822 -142849650 + L2 LINE L2 3044 3300 -13 246 62 0 0 chr11 5933822 5933854 -142849618 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr11 5934025 5934053 -142849419 + AT_rich Low_complexity Low_complexity 1 28 0 3480 211 78 75 chr11 5934634 5935926 -142847546 - L1MC4 LINE L1 -89 7953 6658 1694 156 44 0 chr11 5936150 5936420 -142847052 + AluJb SINE Alu 1 282 -30 330 326 29 36 chr11 5938326 5938464 -142845008 - L2 LINE L2 -32 3240 3104 564 217 28 21 chr11 5938875 5939018 -142844454 - MER104 DNA Tc2 -2 178 35 224 224 105 13 chr11 5939066 5939142 -142844330 - MIR SINE MIR -16 246 164 258 32 0 0 chr11 5939539 5939570 -142843902 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 244 272 48 40 chr11 5939694 5939819 -142843653 - L2 LINE L2 -746 2568 2443 432 315 105 6 chr11 5939975 5940156 -142843316 - MIR SINE MIR -16 246 48 288 0 0 0 chr11 5942657 5942689 -142840783 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 293 57 36 chr11 5942765 5942905 -142840567 - LTR67 LTR ERVL -2 555 413 309 279 75 54 chr11 5942979 5943126 -142840346 - LTR67 LTR ERVL -311 246 97 802 218 53 0 chr11 5943356 5943544 -142839928 + L2 LINE L2 2146 2343 -971 1174 305 160 33 chr11 5943846 5944705 -142838767 + L2 LINE L2 2340 3308 -5 961 279 205 42 chr11 5947216 5947711 -142835761 + L2 LINE L2 2199 2831 -483 2221 86 3 0 chr11 5947711 5948001 -142835471 - AluY SINE Alu -20 291 1 961 279 205 42 chr11 5948001 5948169 -142835303 + L2 LINE L2 2831 2970 -344 331 368 0 0 chr11 5951327 5951463 -142832009 + CT-rich Low_complexity Low_complexity 1 136 0 880 199 42 0 chr11 5951617 5951783 -142831689 + MIR SINE MIR 88 260 -2 476 204 52 64 chr11 5951823 5951995 -142831477 - MLT1D LTR MaLR -275 230 61 188 321 24 12 chr11 5954374 5954458 -142829014 - L3 LINE CR1 -541 1036 952 1258 302 132 29 chr11 5954499 5955499 -142827973 + L2 LINE L2 1944 3038 -234 182 262 48 0 chr11 5955670 5955712 -142827760 + L2 LINE L2 3176 3219 -94 1727 174 27 0 chr11 5955752 5956050 -142827422 - AluJb SINE Alu -6 306 1 436 179 74 0 chr11 5956062 5956157 -142827315 - MIR SINE MIR 0 262 161 345 214 39 68 chr11 5956156 5956248 -142827224 + MIR SINE MIR 91 181 -81 * 197 65 32 0 chr11 5956248 5956279 -142827193 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 5959800 5959821 -142823651 + (TCC)n Simple_repeat Simple_repeat 2 22 0 734 159 18 0 chr11 5960939 5961052 -142822420 + FLAM_C SINE Alu 9 123 -20 3071 226 74 43 chr11 5961163 5961230 -142822242 - L1MEc LINE L1 -2683 3463 3400 1436 155 79 94 chr11 5961230 5961538 -142821934 + THE1C LTR MaLR 1 303 -72 2148 107 0 0 chr11 5961538 5961827 -142821645 - AluSq SINE Alu -24 289 1 1436 155 79 94 chr11 5961827 5961899 -142821573 + THE1C LTR MaLR 303 375 0 3071 226 74 43 chr11 5961899 5961982 -142821490 - L1MEc LINE L1 -2746 3400 3321 726 147 16 39 chr11 5961982 5962111 -142821361 - FLAM_A SINE Alu -7 126 1 2156 92 0 3 chr11 5962116 5962408 -142821064 - AluSc SINE Alu -18 291 1 3071 226 74 43 chr11 5962408 5963469 -142820003 - L1MEc LINE L1 -2828 3318 2234 549 286 95 29 chr11 5963748 5963989 -142819483 + MIR SINE MIR 6 262 0 393 338 186 29 chr11 5964239 5964550 -142818922 - L2 LINE L2 -9 3263 2904 533 307 161 8 chr11 5964653 5965031 -142818441 - L2 LINE L2 -752 2562 2127 2218 176 76 44 chr11 5966352 5966860 -142816612 + L1MB8 LINE L1 4757 5288 -858 2018 134 0 7 chr11 5966860 5967166 -142816306 + AluSx SINE Alu 1 304 -8 2218 176 76 44 chr11 5967166 5967248 -142816224 + L1MB8 LINE L1 5288 5366 -780 3882 174 18 45 chr11 5967275 5968414 -142815058 + L1MCb LINE L1 335 1438 -4849 716 186 20 17 chr11 5968415 5968699 -142814773 + GA-rich Low_complexity Low_complexity 1 284 0 734 175 134 31 chr11 5968701 5968924 -142814548 + L1MCb LINE L1 1405 1650 -4914 * 3670 155 23 84 chr11 5968906 5968951 -142814521 + L1MB8 LINE L1 5354 5400 -778 2062 132 3 7 chr11 5968951 5969261 -142814211 + AluSx SINE Alu 2 310 -2 3670 155 23 84 chr11 5969261 5970088 -142813384 + L1MB8 LINE L1 5400 6173 -5 31 0 0 0 chr11 5970305 5970336 -142813136 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 5971128 5971152 -142812320 + AT_rich Low_complexity Low_complexity 1 24 0 280 310 122 109 chr11 5972461 5972790 -142810682 - L2 LINE L2 -3 3269 2937 339 198 99 20 chr11 5972971 5973072 -142810400 + L1MC3 LINE L1 6988 7096 -689 405 171 89 24 chr11 5973100 5973184 -142810288 + MLT1F1 LTR MaLR 45 133 -442 1963 169 92 10 chr11 5973185 5973576 -142809896 + L1MD3 LINE L1 7416 7838 -157 756 168 0 23 chr11 5973583 5973714 -142809758 + AluJo SINE Alu 7 134 -178 1324 173 7 83 chr11 5973723 5974023 -142809449 + AluJb SINE Alu 1 277 -35 925 214 0 0 chr11 5974030 5974220 -142809252 + AluJo SINE Alu 127 316 0 390 196 39 10 chr11 5974229 5974331 -142809141 + L1MD2 LINE L1 6255 6359 0 302 297 123 13 chr11 5974374 5974529 -142808943 + MLT1K LTR MaLR 398 569 -19 632 339 121 40 chr11 5974603 5974768 -142808704 + L2 LINE L2 1859 2009 -1305 2106 97 10 3 chr11 5974768 5975057 -142808415 - AluSg SINE Alu -13 297 7 632 339 121 40 chr11 5975057 5975771 -142807701 + L2 LINE L2 2009 2881 -433 335 324 125 37 chr11 5975836 5976163 -142807309 + L2 LINE L2 2916 3271 -1 783 271 59 65 chr11 5976190 5976729 -142806743 + L2 LINE L2 1685 2220 -1094 269 289 115 78 chr11 5978170 5978751 -142804721 + L2 LINE L2 1479 2081 -1233 469 268 74 21 chr11 5978785 5978975 -142804497 + L2 LINE L2 3114 3313 0 2145 122 0 3 chr11 5979444 5979738 -142803734 + AluSx SINE Alu 5 297 -15 2361 108 0 0 chr11 5979838 5980148 -142803324 + AluSg SINE Alu 1 307 -3 2624 42 0 7 chr11 5982892 5983199 -142800273 + AluY SINE Alu 1 305 -6 1888 213 60 112 chr11 5983225 5983981 -142799491 + L2 LINE L2 2247 2962 -352 808 159 15 0 chr11 5984017 5984149 -142799323 - FLAM_C SINE Alu -9 134 1 1767 164 49 4 chr11 5984149 5984501 -142798971 + MLT2B1 LTR ERVL 2 418 -97 233 154 0 0 chr11 5984495 5984534 -142798938 + MLT2B1 LTR ERVL 372 410 -4 * 2071 204 49 62 chr11 5984540 5985156 -142798316 - MLT1E2 LTR MaLR -6 620 23 3941 107 27 4 chr11 5985156 5985671 -142797801 - MER1A DNA MER1_type 0 527 1 2071 204 49 62 chr11 5985671 5985694 -142797778 - MLT1E2 LTR MaLR -603 23 1 864 264 204 39 chr11 5985702 5986108 -142797364 - MLT1J LTR MaLR -30 481 9 781 261 116 10 chr11 5986135 5986445 -142797027 + L2 LINE L2 2962 3304 -9 761 254 142 5 chr11 5986477 5986682 -142796790 + MIR SINE MIR 14 246 -16 924 181 12 12 chr11 5986852 5987018 -142796454 + AluJb SINE Alu 140 305 -7 330 324 97 0 chr11 5987052 5987228 -142796244 + L2 LINE L2 1219 1411 -1903 2182 121 41 89 chr11 5987240 5987419 -142796053 - MLT2C1 LTR ERVL -2 395 209 862 191 56 31 chr11 5987419 5987581 -142795891 - FRAM SINE Alu 0 166 1 2182 121 41 89 chr11 5987581 5987816 -142795656 - MLT2C1 LTR ERVL -188 209 1 792 242 34 86 chr11 5987982 5988135 -142795337 - L2 LINE L2 -6 3307 3178 2130 85 0 4 chr11 5988135 5988407 -142795065 + AluY SINE Alu 35 305 -6 792 242 34 86 chr11 5988407 5988580 -142794892 - L2 LINE L2 -135 3178 2998 311 333 44 90 chr11 5988585 5988608 -142794864 + L2 LINE L2 2967 2990 -282 1930 136 0 36 chr11 5988608 5988917 -142794555 - AluJo SINE Alu -14 298 1 311 333 44 90 chr11 5988917 5989214 -142794258 + L2 LINE L2 2990 3272 0 2063 122 3 10 chr11 5989650 5989981 -142793491 - AluSx SINE Alu 0 312 1 25 0 0 0 chr11 5991957 5991982 -142791490 + AT_rich Low_complexity Low_complexity 1 25 0 299 241 0 0 chr11 5992752 5992810 -142790662 - L2 LINE L2 -1 3271 3214 28 29 0 0 chr11 5995570 5995605 -142787867 + AT_rich Low_complexity Low_complexity 1 35 0 263 257 109 17 chr11 5995612 5995778 -142787694 + L1ME LINE L1 5658 5845 -325 2063 236 52 29 chr11 5996003 5996525 -142786947 - MER87 LTR ERV1 -7 534 1 5595 221 29 43 chr11 5997021 5997514 -142785958 - L1MA8 LINE L1 -5 6286 5788 225 0 0 0 chr11 5997514 5997539 -142785933 + (TG)n Simple_repeat Simple_repeat 2 26 0 5595 221 29 43 chr11 5997539 5997555 -142785917 - L1MA8 LINE L1 -503 5788 5773 225 0 0 0 chr11 5997555 5997580 -142785892 + (CA)n Simple_repeat Simple_repeat 2 26 0 5595 221 29 43 chr11 5997580 5998043 -142785429 - L1MA8 LINE L1 -518 5773 5305 2434 77 3 0 chr11 5998043 5998343 -142785129 - AluY SINE Alu -10 301 1 5595 221 29 43 chr11 5998343 6000125 -142783347 - L1MA8 LINE L1 -986 5305 3581 225 130 0 22 chr11 6000136 6000182 -142783290 - L1MA8 LINE L1 -2699 3447 3403 388 321 88 38 chr11 6000289 6000551 -142782921 - L1ME LINE L1 -454 5667 5393 23 0 0 0 chr11 6000902 6000925 -142782547 + AT_rich Low_complexity Low_complexity 1 23 0 293 278 19 9 chr11 6001103 6001211 -142782261 - L1ME LINE L1 -1525 4621 4513 696 301 141 19 chr11 6001231 6001770 -142781702 + L2 LINE L2 1330 1934 -1380 243 88 0 0 chr11 6001770 6001804 -142781668 + (TA)n Simple_repeat Simple_repeat 2 35 0 1030 17 8 0 chr11 6001807 6001926 -142781546 - L1PA5 LINE L1 0 6154 6035 494 263 97 14 chr11 6002554 6002771 -142780701 - Charlie7 DNA MER1_type -575 2037 1803 2635 184 82 24 chr11 6002776 6003239 -142780233 - L1MD1 LINE L1 -179 6063 5553 978 103 314 0 chr11 6003239 6003414 -142780058 - MER30 DNA MER1_type 0 230 1 2635 184 82 24 chr11 6003414 6003575 -142779897 - L1MD1 LINE L1 -689 5553 5403 195 42 0 0 chr11 6003614 6003638 -142779834 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 282 315 22 16 chr11 6004137 6004321 -142779151 - AluJb SINE Alu -10 292 108 845 211 77 35 chr11 6004616 6004690 -142778782 - L1MB7 LINE L1 -304 5880 5811 1786 180 0 0 chr11 6004690 6005005 -142778467 - AluSx SINE Alu 0 315 1 845 211 77 35 chr11 6005005 6005189 -142778283 - L1MB7 LINE L1 -373 5811 5610 1409 199 15 7 chr11 6005193 6005544 -142777928 - L1MB7 LINE L1 -714 5470 5118 466 294 121 9 chr11 6007581 6007812 -142775660 - MIR SINE MIR -1 261 5 1404 201 33 23 chr11 6008124 6008237 -142775235 + AluJo SINE Alu 2 112 -200 405 0 0 0 chr11 6008237 6008282 -142775190 + (CA)n Simple_repeat Simple_repeat 2 46 0 1404 201 33 23 chr11 6008282 6008467 -142775005 + AluJo SINE Alu 112 303 -9 596 258 62 49 chr11 6009281 6009617 -142773855 - L1M1 LINE L1 -563 5741 5406 1136 124 0 0 chr11 6009622 6009783 -142773689 - AluSq SINE Alu -24 289 129 563 314 86 37 chr11 6009814 6010323 -142773149 - L2 LINE L2 -1076 2238 1705 673 133 0 0 chr11 6010325 6010462 -142773010 - AluSg/x SINE Alu 0 327 191 235 333 135 0 chr11 6010467 6010593 -142772879 - L2 LINE L2 -1814 1500 1358 556 240 23 0 chr11 6011823 6011952 -142771520 - FLAM_C SINE Alu -10 133 2 289 306 50 91 chr11 6011993 6012278 -142771194 - L2 LINE L2 -410 2904 2632 2525 143 105 16 chr11 6012278 6012726 -142770746 + LTR45B LTR ERV1 2 489 0 289 306 50 91 chr11 6012726 6012760 -142770712 - L2 LINE L2 -682 2632 2598 237 113 57 19 chr11 6013162 6013215 -142770257 - MIR3 SINE MIR -7 201 147 432 0 0 0 chr11 6013824 6013872 -142769600 + (TG)n Simple_repeat Simple_repeat 2 49 0 1525 151 0 99 chr11 6013873 6014185 -142769287 - AluJb SINE Alu -27 285 5 254 303 61 24 chr11 6014333 6014498 -142768974 - MIR SINE MIR -73 189 19 184 352 11 11 chr11 6019323 6019411 -142764061 + L2 LINE L2 2228 2315 -999 2377 93 0 0 chr11 6020060 6020361 -142763111 - AluY SINE Alu -10 301 1 23 0 0 0 chr11 6020576 6020599 -142762873 + AT_rich Low_complexity Low_complexity 1 23 0 184 264 69 69 chr11 6020617 6020704 -142762768 - MIR SINE MIR -158 104 18 200 136 0 68 chr11 6020938 6020982 -142762490 + MIR SINE MIR 222 262 0 3443 70 5 0 chr11 6021498 6021938 -142761534 - THE1B-int LTR MaLR -1138 442 1 1124 131 15 50 chr11 6021938 6022136 -142761336 - THE1B LTR MaLR 0 364 174 775 33 0 0 chr11 6022136 6022227 -142761245 - AluYb8 SINE Alu -2 316 226 5344 145 10 6 chr11 6022421 6023348 -142760124 + L1PA12 LINE L1 5166 6098 -70 2190 113 0 0 chr11 6023403 6023686 -142759786 + AluSc SINE Alu 1 283 -26 383 322 27 14 chr11 6024010 6024156 -142759316 + L2 LINE L2 3154 3301 -12 310 316 42 53 chr11 6024181 6024371 -142759101 - MIR SINE MIR -67 195 8 198 0 0 0 chr11 6024847 6024869 -142758603 + (T)n Simple_repeat Simple_repeat 1 22 0 1556 106 55 0 chr11 6025344 6025562 -142757910 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6026102 6026276 -142757196 - L2 LINE L2 -251 3021 2838 283 91 0 45 chr11 6026578 6026622 -142756850 - THE1C LTR MaLR -333 42 1 2116 75 33 23 chr11 6026632 6026939 -142756533 - THE1C-int LTR MaLR -11 1569 1260 875 170 61 31 chr11 6026948 6027162 -142756310 - THE1C LTR MaLR -191 184 1 2399 75 7 0 chr11 6027222 6027515 -142755957 + AluY SINE Alu 1 295 -16 265 347 155 19 chr11 6027521 6027792 -142755680 - L2 LINE L2 -626 2688 2381 13771 72 7 1 chr11 6027954 6029716 -142753756 + PABL_A-int LTR ERV1 3243 5015 0 4884 68 39 45 chr11 6029716 6029975 -142753497 + PABL_A LTR ERV1 1 260 -400 348 0 0 23 chr11 6029975 6030019 -142753453 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1942 129 0 18 chr11 6030019 6030306 -142753166 - AluY SINE Alu -30 281 1 4884 68 39 45 chr11 6030306 6030708 -142752764 + PABL_A LTR ERV1 258 660 0 312 349 85 25 chr11 6030709 6030944 -142752528 - L2 LINE L2 -468 2846 2598 197 195 0 0 chr11 6031460 6031501 -142751971 + MIR3 SINE MIR 161 201 -7 321 297 45 74 chr11 6031889 6032158 -142751314 + L2 LINE L2 2598 2858 -456 206 333 143 9 chr11 6032269 6032374 -142751098 + MIR SINE MIR 27 145 -63 431 345 110 44 chr11 6033155 6033474 -142749998 + L2 LINE L2 2933 3272 0 6376 79 15 30 chr11 6033990 6034925 -142748547 - THE1B-int LTR MaLR -659 921 1 2107 121 53 31 chr11 6034925 6035281 -142748191 - THE1B LTR MaLR 0 364 1 2331 173 32 12 chr11 6035281 6035777 -142747695 - L1MC3 LINE L1 -575 7210 6705 5107 137 9 6 chr11 6035925 6036853 -142746619 + L1PA12 LINE L1 5166 6098 -70 2326 102 0 0 chr11 6036909 6037203 -142746269 + AluSc SINE Alu 1 294 -15 371 329 27 14 chr11 6037519 6037665 -142745807 + L2 LINE L2 3154 3301 -12 329 316 42 53 chr11 6037690 6037880 -142745592 - MIR SINE MIR -67 195 8 234 0 0 0 chr11 6038351 6038377 -142745095 + (T)n Simple_repeat Simple_repeat 1 26 0 1428 110 55 0 chr11 6038853 6039071 -142744401 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6039611 6039785 -142743687 - L2 LINE L2 -251 3021 2838 22 0 0 0 chr11 6039834 6039856 -142743616 + AT_rich Low_complexity Low_complexity 1 22 0 348 179 26 0 chr11 6039909 6040026 -142743446 + (TA)n Simple_repeat Simple_repeat 1 120 0 200 175 29 10 chr11 6040055 6040158 -142743314 + (TA)n Simple_repeat Simple_repeat 2 106 0 345 209 146 32 chr11 6040167 6040325 -142743147 - L1ME4a LINE L1 -23 6098 5923 622 256 93 15 chr11 6040515 6040847 -142742625 - Charlie7 DNA MER1_type -452 2160 1803 2355 190 81 26 chr11 6040852 6041315 -142742157 - L1MD1 LINE L1 -179 6063 5543 905 97 314 0 chr11 6041315 6041490 -142741982 - MER30 DNA MER1_type 0 230 1 2355 190 81 26 chr11 6041490 6041682 -142741790 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6041690 6041714 -142741758 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 302 306 79 104 chr11 6041719 6042160 -142741312 - HAL1 LINE L1 -1046 1461 1032 1965 139 0 0 chr11 6042203 6042504 -142740968 - AluSx SINE Alu 0 301 1 1929 166 0 6 chr11 6042728 6043042 -142740430 - AluJb SINE Alu 0 312 1 305 291 92 28 chr11 6043136 6043277 -142740195 - HAL1b LINE L1 -869 479 330 255 282 86 61 chr11 6043383 6043546 -142739926 + L2 LINE L2 2621 2787 -527 31 26 0 0 chr11 6043642 6043680 -142739792 + AT_rich Low_complexity Low_complexity 1 38 0 188 241 35 0 chr11 6044097 6044155 -142739317 + MIR SINE MIR 99 158 -104 2537 40 3 7 chr11 6045936 6046239 -142737233 - AluY SINE Alu -9 302 1 551 327 19 34 chr11 6046782 6047103 -142736369 - L1ME4a LINE L1 -2077 5731 5416 1623 177 14 31 chr11 6047478 6047772 -142735700 - AluJo SINE Alu -15 297 9 1667 154 56 36 chr11 6047797 6048103 -142735369 - AluSx SINE Alu 0 312 1 201 344 135 50 chr11 6048504 6049059 -142734413 - L2 LINE L2 -348 2966 2365 219 293 187 0 chr11 6049234 6049357 -142734115 - L2 LINE L2 0 3313 3168 627 281 24 0 chr11 6049605 6049772 -142733700 + MIR SINE MIR 92 262 0 440 293 117 59 chr11 6049886 6050070 -142733402 + L2 LINE L2 2949 3121 -192 189 0 0 0 chr11 6050070 6050091 -142733381 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2105 99 7 0 chr11 6050091 6050375 -142733097 - AluSp SINE Alu -27 286 1 440 293 117 59 chr11 6050375 6050530 -142732942 + L2 LINE L2 3120 3309 -4 183 371 0 0 chr11 6050630 6050692 -142732780 - MIR SINE MIR -1 261 200 7254 36 1 21 chr11 6052761 6054203 -142729269 + L1PA5 LINE L1 4722 6145 -9 22 0 0 0 chr11 6054486 6054508 -142728964 + AT_rich Low_complexity Low_complexity 1 22 0 467 292 15 22 chr11 6054581 6054718 -142728754 - L2 LINE L2 -9 3304 3169 2150 210 12 37 chr11 6055498 6056013 -142727459 + MLT1D LTR MaLR 4 505 0 438 301 180 49 chr11 6056102 6056418 -142727054 + L2 LINE L2 1390 1663 -1651 771 120 40 13 chr11 6056418 6056568 -142726904 - L1MB8 LINE L1 -11 6167 6014 438 301 180 49 chr11 6056568 6056863 -142726609 + L2 LINE L2 1663 2081 -1233 506 148 31 39 chr11 6056954 6057082 -142726390 - L1MA10 LINE L1 -1 6333 6207 345 244 24 85 chr11 6057105 6057269 -142726203 + L2 LINE L2 2255 2408 -906 6425 176 14 11 chr11 6057700 6059066 -142724406 - MSTB-int LTR MaLR -219 1361 1 748 164 22 0 chr11 6059066 6059200 -142724272 - MSTB LTR MaLR -2 424 288 23 54 0 0 chr11 6061926 6061963 -142721509 + AT_rich Low_complexity Low_complexity 1 37 0 1827 168 10 0 chr11 6063878 6064170 -142719302 - AluSx SINE Alu -17 295 1 917 132 0 22 chr11 6064277 6064413 -142719059 + FLAM_C SINE Alu 1 133 0 356 371 65 12 chr11 6064995 6065316 -142718156 + HAL1b LINE L1 95 432 -916 2318 87 3 0 chr11 6066130 6066430 -142717042 + AluY SINE Alu 1 301 -10 532 313 102 23 chr11 6066768 6067110 -142716362 + L1MB1 LINE L1 3590 3958 -2188 2117 128 0 19 chr11 6067466 6067778 -142715694 + AluSx SINE Alu 2 307 -5 25 65 0 0 chr11 6068060 6068106 -142715366 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr11 6068163 6068192 -142715280 + AT_rich Low_complexity Low_complexity 1 29 0 206 227 0 0 chr11 6068498 6068542 -142714930 + A-rich Low_complexity Low_complexity 4 47 0 34 65 0 0 chr11 6068553 6068615 -142714857 + AT_rich Low_complexity Low_complexity 1 62 0 4250 176 27 31 chr11 6068685 6068935 -142714537 + L1MB1 LINE L1 4778 5028 -1140 1830 149 4 0 chr11 6068935 6069210 -142714262 + AluSp SINE Alu 30 305 -8 4250 176 27 31 chr11 6069210 6070349 -142713123 + L1MB1 LINE L1 5028 6161 -7 22 0 0 0 chr11 6070757 6070779 -142712693 + AT_rich Low_complexity Low_complexity 1 22 0 192 308 6 141 chr11 6070855 6071011 -142712461 - MIR SINE MIR -79 183 49 462 195 11 0 chr11 6071198 6071285 -142712187 - MER58B DNA MER1_type 0 341 254 180 0 0 0 chr11 6071312 6071332 -142712140 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 708 237 59 23 chr11 6071391 6071610 -142711862 - MER58B DNA MER1_type -114 227 1 2154 107 4 0 chr11 6071999 6072309 -142711163 + AluSx SINE Alu 1 311 0 246 292 63 69 chr11 6073536 6073709 -142709763 + MIR SINE MIR 11 183 -79 566 320 63 5 chr11 6073814 6074036 -142709436 - L2 LINE L2 -1 3312 3078 236 167 17 33 chr11 6074276 6074336 -142709136 + L1MC/D LINE L1 5711 5769 -2039 302 307 76 43 chr11 6074889 6075469 -142708003 - LTR57-int LTR ERVL -2560 2783 2225 1602 194 32 55 chr11 6075580 6076014 -142707458 - LTR47B LTR ERVL -19 424 1 448 303 98 57 chr11 6076549 6076916 -142706556 + L2 LINE L2 2877 3258 -55 205 349 46 46 chr11 6076939 6077091 -142706381 - L2 LINE L2 -654 2660 2509 2281 101 0 0 chr11 6077099 6077387 -142706085 + AluSx SINE Alu 13 300 -12 2461 80 0 0 chr11 6077963 6078264 -142705208 + AluY SINE Alu 1 301 -10 181 331 57 38 chr11 6078913 6079070 -142704402 - L2 LINE L2 -999 2315 2156 194 182 0 68 chr11 6079269 6079313 -142704159 - MIR SINE MIR 0 262 222 188 287 58 58 chr11 6079547 6079634 -142703838 + MIR SINE MIR 18 104 -158 23 0 0 0 chr11 6079652 6079675 -142703797 + AT_rich Low_complexity Low_complexity 1 23 0 2395 89 0 3 chr11 6079890 6080192 -142703280 + AluSg SINE Alu 1 301 -9 208 173 40 40 chr11 6080226 6080301 -142703171 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1617 165 6 84 chr11 6080460 6080794 -142702678 - AluJo SINE Alu -4 308 1 391 300 47 88 chr11 6080834 6081119 -142702353 - L2 LINE L2 -410 2904 2632 2341 145 102 16 chr11 6081119 6081568 -142701904 + LTR45B LTR ERV1 2 489 0 391 300 47 88 chr11 6081568 6081602 -142701870 - L2 LINE L2 -682 2632 2598 211 340 112 15 chr11 6081650 6081847 -142701625 - L2 LINE L2 -1105 2209 1994 236 113 57 19 chr11 6082004 6082057 -142701415 - MIR3 SINE MIR -7 201 147 423 0 0 0 chr11 6082668 6082715 -142700757 + (TG)n Simple_repeat Simple_repeat 2 48 0 1534 154 0 99 chr11 6082716 6083028 -142700444 - AluJb SINE Alu -27 285 5 570 281 51 6 chr11 6083175 6083353 -142700119 - MIR SINE MIR -73 189 4 476 325 102 11 chr11 6083780 6084054 -142699418 + L2 LINE L2 2570 2868 -446 1599 232 30 48 chr11 6084068 6084733 -142698739 - L1M4 LINE L1 -2468 4176 3524 4537 180 49 5 chr11 6084757 6085232 -142698240 - L1MA7 LINE L1 -22 6269 5817 1806 171 44 21 chr11 6085232 6085572 -142697900 - MER7A DNA MER2_type 0 346 1 4537 180 49 5 chr11 6085572 6086699 -142696773 - L1MA7 LINE L1 -474 5817 4590 1186 198 90 0 chr11 6086699 6086967 -142696505 - MSTB1 LTR MaLR -140 292 1 1821 160 57 19 chr11 6086967 6087386 -142696086 - L1MA7 LINE L1 -1707 4439 4005 2422 173 6 35 chr11 6087389 6087870 -142695602 - MER52A LTR ERV1 0 1755 1289 4004 167 118 156 chr11 6088117 6088782 -142694690 - L1 LINE L1 -863 5283 4594 912 207 119 0 chr11 6088782 6089043 -142694429 - MSTB1 LTR MaLR -140 292 1 4004 167 118 156 chr11 6089043 6089466 -142694006 - L1 LINE L1 -1552 4594 4157 8214 165 112 23 chr11 6089466 6091078 -142692394 - MER52A LTR ERV1 0 1755 1 4004 167 118 156 chr11 6091078 6091605 -142691867 - L1 LINE L1 -1989 4157 3478 839 244 32 8 chr11 6091782 6092032 -142691440 - L1M4 LINE L1 -6256 286 31 367 311 73 23 chr11 6092202 6092421 -142691051 + MIR SINE MIR 33 262 0 2626 40 0 3 chr11 6092590 6092893 -142690579 - AluY SINE Alu -9 302 1 1194 151 8 40 chr11 6093159 6093231 -142690241 + L1MA8 LINE L1 6032 6105 -186 1947 172 52 41 chr11 6093231 6093650 -142689822 - MSTB LTR MaLR 0 426 3 1194 151 8 40 chr11 6093650 6093828 -142689644 + L1MA8 LINE L1 6105 6274 -17 2282 101 0 16 chr11 6093852 6094158 -142689314 + AluSg SINE Alu 1 301 -9 552 122 0 11 chr11 6094158 6094248 -142689224 + L1MB3 LINE L1 6055 6143 -40 290 177 32 0 chr11 6094254 6094316 -142689156 + L1 LINE L1 3816 3879 -2267 332 238 148 8 chr11 6094370 6094492 -142688980 + LTR37B LTR ERV1 330 468 0 21 0 0 0 chr11 6094544 6094565 -142688907 + AT_rich Low_complexity Low_complexity 1 21 0 2293 232 35 3 chr11 6095004 6095608 -142687864 + L1ME1 LINE L1 5539 6161 -5 22 35 0 0 chr11 6095741 6095770 -142687702 + AT_rich Low_complexity Low_complexity 1 29 0 370 346 54 19 chr11 6095906 6096111 -142687361 - HAL1 LINE L1 -869 1638 1427 420 249 30 117 chr11 6101132 6101329 -142682143 + MIR SINE MIR 70 249 -13 441 66 0 0 chr11 6101449 6101510 -142681962 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 283 22 36 chr11 6101545 6101683 -142681789 - L1ME LINE L1 -510 5656 5521 224 341 135 0 chr11 6102481 6102607 -142680865 + L2 LINE L2 1358 1500 -1814 639 133 0 0 chr11 6102612 6102753 -142680719 + AluSg/x SINE Alu 194 334 0 723 312 84 37 chr11 6102755 6103265 -142680207 + L2 LINE L2 1705 2238 -1076 1192 107 0 18 chr11 6103296 6103454 -142680018 + AluSq SINE Alu 129 288 -25 224 30 30 0 chr11 6103454 6103487 -142679985 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3742 185 19 28 chr11 6103488 6104370 -142679102 + L1MA9 LINE L1 5439 6312 0 736 259 38 46 chr11 6105553 6105900 -142677572 - L1MD3 LINE L1 0 7995 7652 557 284 24 47 chr11 6106406 6106617 -142676855 + L3 LINE CR1 765 970 -607 279 354 71 0 chr11 6107872 6107999 -142675473 - L2 LINE L2 0 3272 3137 426 331 41 6 chr11 6109971 6110143 -142673329 - MIR SINE MIR -26 236 59 191 284 178 58 chr11 6111390 6111598 -142671874 + L2 LINE L2 2620 2852 -462 469 261 127 13 chr11 6113827 6113984 -142669488 + MIR SINE MIR 73 247 -15 8023 161 24 8 chr11 6114325 6115641 -142667831 - MSTA-int LTR MaLR -221 1430 89 2725 95 92 5 chr11 6115641 6116053 -142667419 + LTR7 LTR ERV1 1 448 -2 8023 161 24 8 chr11 6116053 6116144 -142667328 - MSTA-int LTR MaLR -1562 89 1 1905 161 39 14 chr11 6116144 6116499 -142666973 - MSTA LTR MaLR 0 428 65 1681 132 68 37 chr11 6116511 6116836 -142666636 - LTR10A LTR ERV1 -61 548 214 273 253 126 0 chr11 6116858 6116945 -142666527 - LTR10A LTR ERV1 -511 98 1 432 149 0 0 chr11 6116947 6117014 -142666458 - MSTA LTR MaLR -361 67 1 554 292 116 4 chr11 6117840 6118073 -142665399 - MIR SINE MIR 0 262 4 1442 195 47 30 chr11 6118384 6118497 -142664975 + AluJo SINE Alu 2 112 -200 387 0 0 0 chr11 6118497 6118540 -142664932 + (CA)n Simple_repeat Simple_repeat 2 44 0 1442 195 47 30 chr11 6118540 6118723 -142664749 + AluJo SINE Alu 112 303 -9 11503 223 38 30 chr11 6120081 6121790 -142661682 - L1PA16 LINE L1 0 6223 4528 333 82 0 0 chr11 6121790 6121839 -142661633 + (TG)n Simple_repeat Simple_repeat 2 50 0 11503 223 38 30 chr11 6121839 6123806 -142659666 - L1PA16 LINE L1 -1695 4528 2577 2393 89 0 13 chr11 6123806 6124119 -142659353 - AluSg1 SINE Alu 0 309 1 11503 223 38 30 chr11 6124119 6124228 -142659244 - L1PA16 LINE L1 -3646 2577 2470 909 183 0 0 chr11 6124228 6124397 -142659075 + ALR/Alpha Satellite centromeric 3 171 0 11503 223 38 30 chr11 6124397 6124952 -142658520 - L1PA16 LINE L1 -3753 2470 1921 387 0 0 0 chr11 6124952 6124995 -142658477 + (TA)n Simple_repeat Simple_repeat 1 43 0 2552 42 3 16 chr11 6124995 6125306 -142658166 - AluY SINE Alu -4 307 1 11503 223 38 30 chr11 6125306 6126612 -142656860 - L1PA16 LINE L1 -4301 1922 363 419 299 58 48 chr11 6126732 6127043 -142656429 - L1PA16 LINE L1 -5838 366 53 658 424 44 18 chr11 6127252 6127754 -142655718 - L1M2 LINE L1 -6320 529 15 603 214 13 7 chr11 6127773 6127927 -142655545 - ERVL LTR ERVL -1739 4025 3871 614 178 0 0 chr11 6127944 6128062 -142655410 + L1ME1 LINE L1 5813 5930 -236 886 283 84 27 chr11 6128215 6128956 -142654516 - L1PBb LINE L1 -4965 1883 1008 429 296 58 48 chr11 6129076 6129387 -142654085 - L1PBb LINE L1 -5838 1011 698 658 424 44 18 chr11 6129596 6130098 -142653374 - L1PBb LINE L1 -6320 529 15 603 214 13 7 chr11 6130117 6130271 -142653201 - ERVL LTR ERVL -1739 4025 3871 1006 226 4 4 chr11 6130288 6130527 -142652945 + L1ME1 LINE L1 5813 6051 -115 1985 105 25 11 chr11 6130533 6130818 -142652654 + AluSg SINE Alu 1 289 -21 462 226 8 15 chr11 6131265 6131398 -142652074 - L1MA7 LINE L1 -4 6287 6156 289 188 29 51 chr11 6131434 6131572 -142651900 - Charlie5 DNA MER1_type -126 2486 2352 2178 149 32 5 chr11 6131570 6131946 -142651526 - L1PA16 LINE L1 0 6166 5781 473 103 16 159 chr11 6131952 6132078 -142651394 - MER50 LTR ERV1 -130 604 497 1659 194 51 15 chr11 6134149 6134561 -142648911 - Charlie4a DNA MER1_type -33 475 49 1321 198 15 10 chr11 6135495 6135847 -142647625 + L1MB8 LINE L1 5118 5470 -714 2320 188 42 21 chr11 6135851 6136035 -142647437 + L1MB8 LINE L1 5610 5789 -389 1797 180 0 0 chr11 6136035 6136350 -142647122 + AluSx SINE Alu 1 315 0 2320 188 42 21 chr11 6136350 6136692 -142646780 + L1MB8 LINE L1 5789 6148 -30 415 263 22 118 chr11 6137042 6137270 -142646202 - L1ME LINE L1 -339 5782 5577 274 219 27 41 chr11 6137604 6137677 -142645795 - L2 LINE L2 -8 3305 3234 221 356 0 0 chr11 6137721 6137794 -142645678 + L2 LINE L2 3237 3309 -4 204 209 0 0 chr11 6138369 6138412 -142645060 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 367 75 17 chr11 6138497 6138617 -142644855 + L2 LINE L2 3137 3263 -9 419 251 94 6 chr11 6140672 6140843 -142642629 - L1MC4 LINE L1 0 8042 7857 * 1071 263 67 25 chr11 6140841 6141420 -142642052 + L1ME3A LINE L1 5261 5889 -281 277 273 82 49 chr11 6141404 6141854 -142641618 + L1ME3 LINE L1 4754 5232 -914 * 282 334 77 15 chr11 6141882 6142206 -142641266 + L1ME3 LINE L1 5254 5591 -574 399 295 71 22 chr11 6142360 6142543 -142640929 + L1ME3 LINE L1 5752 5943 -219 563 296 70 50 chr11 6143322 6143739 -142639733 + L1ME LINE L1 5310 5738 -383 1978 158 103 8 chr11 6143739 6144126 -142639346 - MSTB LTR MaLR -2 424 1 563 296 70 50 chr11 6144126 6144150 -142639322 + L1ME LINE L1 5738 5760 -361 3237 142 45 6 chr11 6144461 6144968 -142638504 - MER1A DNA MER1_type 0 527 1 42240 39 3 0 chr11 6145213 6150356 -142633116 + L1P LINE L1 1 5161 -985 4646 11 0 0 chr11 6150495 6151019 -142632453 + L1PA3 LINE L1 5628 6151 -4 216 0 0 0 chr11 6151054 6151078 -142632394 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 918 214 31 5 chr11 6151078 6151274 -142632198 + THE1C LTR MaLR 175 375 0 255 388 53 24 chr11 6151284 6151490 -142631982 + L2 LINE L2 2765 2976 -338 6268 26 3 1 chr11 6154535 6155275 -142628197 - L1PA4 LINE L1 -3 6152 5412 1419 324 53 19 chr11 6155709 6156345 -142627127 + L2 LINE L2 2184 2841 -473 193 250 100 33 chr11 6156384 6156444 -142627028 - MER5B DNA MER1_type 0 178 115 237 225 75 0 chr11 6156508 6156588 -142626884 + L1ME LINE L1 197 282 -5923 268 271 88 0 chr11 6157476 6157646 -142625826 + L1M3d LINE L1 1025 1209 -4682 347 231 0 33 chr11 6157859 6157950 -142625522 + L1ME LINE L1 1532 1619 -4777 * 652 246 11 29 chr11 6157928 6158103 -142625369 + L1MEc LINE L1 36 207 -6189 3204 269 61 32 chr11 6158107 6159458 -142624014 + L1MEc LINE L1 353 1751 -4645 2111 121 0 10 chr11 6159458 6159756 -142623716 + AluSx SINE Alu 1 295 -17 3204 269 61 32 chr11 6159756 6159858 -142623614 + L1MEc LINE L1 1751 1849 -4547 248 226 0 0 chr11 6159870 6159974 -142623498 + L1MEc LINE L1 2463 2627 -3588 351 0 0 0 chr11 6159982 6160021 -142623451 + (CA)n Simple_repeat Simple_repeat 2 40 0 6703 59 9 22 chr11 6160023 6160968 -142622504 - L1PA7 LINE L1 -21 6133 5201 5420 101 33 12 chr11 6160968 6161778 -142621694 + L1PA15 LINE L1 5337 6163 -2 521 303 76 32 chr11 6162179 6162364 -142621108 + LTR33 LTR ERVL 18 210 -311 321 237 51 85 chr11 6162420 6162538 -142620934 + LTR33 LTR ERVL 304 417 -104 192 77 0 0 chr11 6162894 6162920 -142620552 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 254 28 14 chr11 6162929 6163000 -142620472 - L1ME LINE L1 -204 5986 5915 489 283 81 12 chr11 6163132 6163305 -142620167 - MIR SINE MIR -73 189 5 530 286 83 43 chr11 6163305 6163822 -142619650 - L1ME LINE L1 -312 5878 5341 384 320 73 77 chr11 6164020 6164595 -142618877 - L1ME LINE L1 -1016 5199 4627 338 287 81 46 chr11 6164595 6164769 -142618703 + MER5A DNA MER1_type 7 186 -3 664 302 116 67 chr11 6164778 6164931 -142618541 - L1ME LINE L1 -1586 4629 4485 1907 140 32 0 chr11 6164931 6165210 -142618262 - AluSg SINE Alu -22 288 1 664 302 116 67 chr11 6165210 6165800 -142617672 - L1ME LINE L1 -1730 4485 3850 2022 234 123 31 chr11 6165989 6166730 -142616742 - L1MEc LINE L1 -3193 3022 2227 2347 86 0 19 chr11 6166730 6167045 -142616427 - AluY SINE Alu -2 309 1 2022 234 123 31 chr11 6167045 6167269 -142616203 - L1MEc LINE L1 -3988 2227 2025 659 300 106 29 chr11 6167407 6167784 -142615688 - L1MEc LINE L1 -5936 460 55 323 214 0 67 chr11 6167912 6168001 -142615471 - L1ME4a LINE L1 -71 6050 5968 874 171 0 0 chr11 6168197 6168343 -142615129 + FRAM SINE Alu 30 175 -1 271 205 39 26 chr11 6168675 6168753 -142614719 - L1ME4a LINE L1 -495 5626 5548 512 290 54 27 chr11 6168821 6169007 -142614465 + MIR SINE MIR 72 262 0 311 222 20 46 chr11 6169046 6169230 -142614242 - L1ME4a LINE L1 -897 5405 5256 737 173 167 0 chr11 6169231 6169393 -142614079 - L1P LINE L1 -1947 4199 4011 4258 149 15 8 chr11 6169394 6170118 -142613354 + L1PA16 LINE L1 5438 6166 0 28 29 0 0 chr11 6170740 6170775 -142612697 + AT_rich Low_complexity Low_complexity 1 35 0 457 393 85 22 chr11 6172426 6172874 -142610598 - L3 LINE CR1 -5 1572 1097 693 237 78 41 chr11 6173689 6173908 -142609564 + L2 LINE L2 600 826 -2488 374 246 53 18 chr11 6173908 6174022 -142609450 + MLT1G LTR MaLR 473 590 0 330 75 94 19 chr11 6174193 6174246 -142609226 - LTR67 LTR ERVL -1 556 500 245 279 99 70 chr11 6174279 6174451 -142609021 - LTR67 LTR ERVL -134 423 247 1856 178 43 0 chr11 6174470 6174818 -142608654 + L1MC3 LINE L1 7227 7589 -196 1197 139 21 72 chr11 6174844 6175081 -142608391 + AluJb SINE Alu 84 308 -4 417 30 45 15 chr11 6175094 6175161 -142608311 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 576 178 36 115 chr11 6175162 6175415 -142608057 + L1MC3 LINE L1 7553 7785 0 490 306 60 50 chr11 6175591 6175989 -142607483 + L2 LINE L2 1957 2358 -956 5194 168 93 59 chr11 6179122 6179695 -142603777 - L1MC3 LINE L1 -35 7750 7198 250 163 0 0 chr11 6179695 6179738 -142603734 - MLT1F1 LTR MaLR -478 89 47 5194 168 93 59 chr11 6179738 6180397 -142603075 - L1MC3 LINE L1 -587 7198 6432 387 292 158 15 chr11 6180560 6180762 -142602710 - MIR SINE MIR -13 249 19 850 234 73 5 chr11 6180780 6180985 -142602487 - MER20 DNA MER1_type 0 219 1 225 313 49 86 chr11 6182610 6182773 -142600699 - L2 LINE L2 -473 2841 2685 917 192 106 0 chr11 6182785 6182983 -142600489 + MER58A DNA MER1_type 1 219 -5 2478 42 0 26 chr11 6183375 6183683 -142599789 + AluY SINE Alu 1 300 -11 408 206 49 0 chr11 6183686 6183788 -142599684 + L1MC5 LINE L1 7335 7441 -520 1026 247 113 43 chr11 6184249 6184719 -142598753 - MLT1D LTR MaLR 0 505 3 1433 231 130 47 chr11 6184846 6185421 -142598051 + L1MB5 LINE L1 347 969 -5573 5067 202 105 23 chr11 6185424 6188779 -142594693 + L1MB5 LINE L1 2965 6660 -12 250 356 89 53 chr11 6188792 6189185 -142594287 - L2 LINE L2 -2288 1026 620 183 217 87 0 chr11 6189255 6189301 -142594171 + L2 LINE L2 3223 3272 0 1589 166 10 41 chr11 6189823 6190118 -142593354 + AluJo SINE Alu 14 299 -13 1568 194 3 16 chr11 6190174 6190478 -142592994 - AluJo SINE Alu -12 300 1 295 333 97 14 chr11 6191211 6191355 -142592117 + MER5B DNA MER1_type 1 156 -22 180 341 61 8 chr11 6191829 6191961 -142591511 - L2 LINE L2 -1208 2106 1968 460 278 159 30 chr11 6192222 6192492 -142590980 - L2 LINE L2 -4 3309 3005 2876 129 27 43 chr11 6193963 6194476 -142588996 - LTR10B LTR ERV1 0 505 1 482 184 62 9 chr11 6194496 6194630 -142588842 + MER21B LTR ERV1 614 808 -123 287 257 27 0 chr11 6194703 6194777 -142588695 - MER77 LTR ERV1 -4 601 526 3068 165 96 33 chr11 6194781 6195090 -142588382 - LTR62 LTR ERVK -2 717 429 2385 121 32 69 chr11 6195090 6195594 -142587878 - LTR19A LTR ERV1 -1 485 1 3068 165 96 33 chr11 6195594 6195958 -142587514 - LTR62 LTR ERVK -290 429 1 1419 244 14 92 chr11 6195973 6196464 -142587008 - MER21B LTR ERV1 -396 467 15 2487 182 24 21 chr11 6196735 6197268 -142586204 - MER21B-int LTR ERV1 -61 4130 3596 4697 56 8 0 chr11 6197368 6197989 -142585483 - L1P LINE L1 -5514 632 7 21 0 0 0 chr11 6197996 6198017 -142585455 + AT_rich Low_complexity Low_complexity 1 21 0 2843 169 74 11 chr11 6200284 6200852 -142582620 + MER6A DNA MER2_type 2 605 0 1972 162 66 33 chr11 6201677 6202204 -142581268 - MLT2A2 LTR ERVL 0 554 1 195 219 55 55 chr11 6202429 6202502 -142580970 - L2 LINE L2 -469 2845 2773 205 167 0 30 chr11 6203050 6203116 -142580356 + (TA)n Simple_repeat Simple_repeat 2 65 0 287 237 37 52 chr11 6203252 6203387 -142580085 + L1ME LINE L1 5473 5605 -516 250 207 61 24 chr11 6204529 6204611 -142578861 - ERVL LTR ERVL -5062 702 618 493 273 105 40 chr11 6205116 6205542 -142577930 - LTR33 LTR ERVL -8 513 3 640 200 91 11 chr11 6205752 6205927 -142577545 + MER5A DNA MER1_type 1 189 0 7555 184 33 17 chr11 6206811 6209489 -142573983 + L1PA16 LINE L1 3456 6166 0 2254 92 20 0 chr11 6210826 6211120 -142572352 + AluSg SINE Alu 5 304 -6 331 92 154 0 chr11 6211124 6211189 -142572283 - MADE1 DNA Mariner 0 80 6 301 169 0 0 chr11 6211232 6211291 -142572181 + MER92B LTR ERV1 431 489 -147 1016 287 72 18 chr11 6211299 6211689 -142571783 + ERVL LTR ERVL 3282 3692 -2072 1335 134 45 0 chr11 6211705 6211928 -142571544 + LTR45B LTR ERV1 3 235 -254 384 244 134 46 chr11 6212316 6212704 -142570768 + MLT1E LTR MaLR 26 495 -54 2846 187 33 2 chr11 6213205 6213745 -142569727 + MER41D LTR ERV1 1 557 0 563 238 86 30 chr11 6213788 6214091 -142569381 - HAL1 LINE L1 -135 2372 2053 1063 191 10 5 chr11 6214131 6214330 -142569142 - MER82 DNA MER2_type 0 653 454 614 167 89 89 chr11 6214600 6214743 -142568729 + MIR SINE MIR 71 216 -46 2180 49 8 4 chr11 6214743 6215009 -142568463 + AluY SINE Alu 1 267 -44 614 167 89 89 chr11 6215009 6215045 -142568427 + MIR SINE MIR 215 250 -12 519 161 0 11 chr11 6215173 6215260 -142568212 - FLAM_A SINE Alu -15 127 42 349 216 123 56 chr11 6215565 6215727 -142567745 - L1ME4a LINE L1 -224 5897 5725 417 267 50 6 chr11 6215731 6215911 -142567561 - L1ME4a LINE L1 -450 5671 5484 1140 335 149 22 chr11 6216018 6217160 -142566312 + L2 LINE L2 1608 2894 -420 238 250 14 56 chr11 6217172 6217244 -142566228 - L2 LINE L2 -11 3302 3234 316 354 95 55 chr11 6217263 6217588 -142565884 + L2 LINE L2 2885 3222 -50 1217 197 94 0 chr11 6218072 6218316 -142565156 + AluJo SINE Alu 46 312 0 902 274 138 9 chr11 6218434 6218891 -142564581 - MLT1G1 LTR MaLR -7 588 73 292 276 39 31 chr11 6218919 6219046 -142564426 - MLT1G1-int LTR MaLR -1 1370 1243 214 206 111 0 chr11 6219291 6219354 -142564118 - L2 LINE L2 -944 2370 2301 22 0 0 0 chr11 6219480 6219502 -142563970 + AT_rich Low_complexity Low_complexity 1 22 0 35583 38 8 0 chr11 6219502 6224849 -142558623 - L1PA3 LINE L1 -3 6152 782 2011 90 77 64 chr11 6224949 6225360 -142558112 + LTR14B LTR ERVK 1 608 0 270 282 24 24 chr11 6225403 6225573 -142557899 + L1ME3A LINE L1 3776 3945 -2201 534 266 108 22 chr11 6225836 6226159 -142557313 + L1ME3A LINE L1 5618 5968 -202 1008 126 0 0 chr11 6226294 6226437 -142557035 + FLAM_C SINE Alu 1 143 0 478 159 34 0 chr11 6226444 6226532 -142556940 + AluSg/x SINE Alu 201 291 -18 689 76 0 0 chr11 6226699 6226791 -142556681 - AluY SINE Alu -10 301 210 2025 122 3 11 chr11 6226905 6227220 -142556252 + AluSx SINE Alu 1 313 0 390 304 87 38 chr11 6227391 6227657 -142555815 + L1M4 LINE L1 4681 4959 -1187 509 322 90 25 chr11 6227727 6227972 -142555500 - MIR SINE MIR 0 262 2 301 272 159 88 chr11 6228156 6228620 -142554852 + L1ME4a LINE L1 4736 5232 -914 305 306 45 37 chr11 6228675 6228809 -142554663 + L1ME4a LINE L1 5297 5431 -690 1671 127 0 12 chr11 6229099 6229358 -142554114 + AluSx SINE Alu 40 295 -17 341 224 121 0 chr11 6229364 6229480 -142553992 + L1ME4a LINE L1 5767 5896 -225 264 314 0 0 chr11 6229658 6229728 -142553744 - L2 LINE L2 0 3313 3244 227 329 0 0 chr11 6229784 6229869 -142553603 + (TA)n Simple_repeat Simple_repeat 2 86 0 2372 98 0 0 chr11 6230272 6230577 -142552895 - AluSx SINE Alu -6 306 2 5091 94 10 1 chr11 6231406 6232204 -142551268 - L1P LINE L1 -860 5286 4482 1897 168 0 0 chr11 6232333 6232624 -142550848 + AluJb SINE Alu 3 293 -19 1970 129 3 3 chr11 6233533 6233828 -142549644 - AluSx SINE Alu -17 295 1 1271 254 97 28 chr11 6233842 6234453 -142549019 + L1MC5 LINE L1 7261 7913 -48 590 295 58 45 chr11 6234536 6234933 -142548539 + MLT1J1 LTR MaLR 43 444 -2 291 242 30 0 chr11 6234942 6235008 -142548464 + L2 LINE L2 3188 3255 -17 311 266 125 23 chr11 6235164 6235292 -142548180 + L2 LINE L2 3170 3310 -3 22 35 0 0 chr11 6235880 6235909 -142547563 + AT_rich Low_complexity Low_complexity 1 29 0 835 226 78 46 chr11 6235912 6236129 -142547343 - MER58A DNA MER1_type 0 224 1 12922 38 4 1 chr11 6236650 6239001 -142544471 - L1PA5 LINE L1 0 6154 3791 6441 99 56 0 chr11 6239001 6239972 -142543500 - L1MA1 LINE L1 -7 6295 5271 826 214 124 19 chr11 6240555 6240809 -142542663 - MLT1D LTR MaLR -2 503 199 457 133 27 0 chr11 6240813 6240888 -142542584 + MLT1B LTR MaLR 1 77 -313 1318 164 96 40 chr11 6240888 6241138 -142542334 + Tigger7 DNA MER2_type 1 264 -469 590 167 0 10 chr11 6241143 6241239 -142542233 + Tigger7 DNA MER2_type 2392 2486 -1 * 1399 183 46 3 chr11 6241239 6241520 -142541952 + MLT1B LTR MaLR 75 367 -23 823 201 22 22 chr11 6241518 6241697 -142541775 - MSTD LTR MaLR -217 179 1 * 1077 192 43 33 chr11 6241901 6242177 -142541295 + L1ME2 LINE L1 5738 6016 -148 719 214 0 0 chr11 6242382 6242513 -142540959 + FLAM_C SINE Alu 1 131 -2 249 265 15 0 chr11 6242881 6242949 -142540523 + LTR50 LTR ERVL 1 69 -726 235 309 27 36 chr11 6242979 6243089 -142540383 + L1MC4 LINE L1 6912 7020 -1022 27 29 0 0 chr11 6243446 6243480 -142539992 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr11 6243547 6243568 -142539904 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 6243642 6243677 -142539795 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr11 6244000 6244038 -142539434 + AT_rich Low_complexity Low_complexity 1 38 0 7675 22 2 0 chr11 6244359 6245967 -142537505 - L1PA3 LINE L1 -5 6150 4541 7122 21 0 0 chr11 6245967 6246825 -142536647 + L1P LINE L1 2453 3310 -2836 200 299 71 24 chr11 6246954 6247081 -142536391 + MIR SINE MIR 89 221 -41 295 279 36 73 chr11 6247158 6247323 -142536149 - MIR3 SINE MIR -40 168 10 181 216 0 0 chr11 6247713 6247750 -142535722 - MIR SINE MIR -223 39 3 195 292 92 77 chr11 6247764 6247894 -142535578 + L2 LINE L2 2941 3072 -200 1066 271 175 7 chr11 6248198 6248616 -142534856 + L2 LINE L2 2528 3012 -301 416 298 88 6 chr11 6248715 6248886 -142534586 - L1ME LINE L1 -460 5661 5477 650 152 95 25 chr11 6250344 6250502 -142532970 + MER53 DNA DNA 3 171 -18 230 224 0 35 chr11 6250615 6250673 -142532799 - HAL1b LINE L1 -628 720 665 239 254 82 30 chr11 6250793 6250927 -142532545 - HAL1 LINE L1 -944 1563 1423 243 245 98 37 chr11 6250974 6251137 -142532335 - HAL1 LINE L1 -1183 1324 1152 230 175 0 18 chr11 6254362 6254419 -142529053 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 299 207 49 0 chr11 6254979 6255061 -142528411 + MLT1H LTR MaLR 464 549 0 267 256 64 48 chr11 6255726 6255851 -142527621 - MIR SINE MIR -48 214 88 277 345 101 0 chr11 6256125 6256264 -142527208 - MIR SINE MIR -62 200 48 39 80 0 0 chr11 6256529 6256617 -142526855 + AT_rich Low_complexity Low_complexity 1 88 0 22 56 0 0 chr11 6256751 6256787 -142526685 + AT_rich Low_complexity Low_complexity 1 36 0 326 283 44 28 chr11 6257007 6257082 -142526390 - L1MC4a LINE L1 -1913 5895 5823 2381 194 83 21 chr11 6257082 6257614 -142525858 + MLT1F1 LTR MaLR 1 565 -2 326 283 44 28 chr11 6257614 6257718 -142525754 - L1MC4a LINE L1 -1985 5823 5713 837 226 18 128 chr11 6258385 6258930 -142524542 - L1MC5 LINE L1 -738 7223 6739 45 0 0 0 chr11 6259963 6260008 -142523464 + AT_rich Low_complexity Low_complexity 1 45 0 975 294 97 53 chr11 6260024 6260800 -142522672 + L1MC/D LINE L1 2199 2939 -3207 1735 174 0 3 chr11 6260800 6261102 -142522370 + AluJb SINE Alu 1 301 0 6688 174 21 6 chr11 6261108 6263231 -142520241 + L1PA15 LINE L1 4015 6159 -6 975 294 97 53 chr11 6263231 6264463 -142519009 + L1MC/D LINE L1 2943 4304 -1842 356 276 39 64 chr11 6264792 6265075 -142518397 + L1P LINE L1 4759 5034 -1112 1209 272 96 38 chr11 6265468 6265967 -142517505 - MLT1F LTR MaLR -10 532 52 2560 42 0 0 chr11 6266067 6266378 -142517094 + L1P LINE L1 3474 3784 -2362 267 363 46 43 chr11 6266608 6266937 -142516535 + L1MC/D LINE L1 5254 5586 -2222 2104 112 7 3 chr11 6266937 6267232 -142516240 - AluSq SINE Alu -17 296 1 267 363 46 43 chr11 6267232 6267293 -142516179 + L1MC/D LINE L1 5586 5645 -2163 3943 66 10 2 chr11 6267422 6267937 -142515535 + L1PA7 LINE L1 5633 6151 -3 1150 245 75 39 chr11 6268050 6268245 -142515227 + L1MC4 LINE L1 3211 3398 -2748 1984 136 88 14 chr11 6268245 6268598 -142514874 - L1PA15 LINE L1 0 6165 5787 1150 245 75 39 chr11 6268598 6268884 -142514588 + L1MC4 LINE L1 3398 3709 -2437 752 245 97 7 chr11 6269078 6269368 -142514104 + L1MC4 LINE L1 4268 4583 -1563 1383 213 80 24 chr11 6270042 6270502 -142512970 + L1MC4 LINE L1 4572 5057 -1089 1550 209 98 106 chr11 6270506 6270851 -142512621 + L1MC4 LINE L1 5090 4705 -1441 379 271 122 27 chr11 6270851 6271039 -142512433 + MER63A DNA MER1_type 2 207 -3 1550 209 98 106 chr11 6271039 6271728 -142511744 + L1MC4 LINE L1 4704 5397 -749 268 255 50 93 chr11 6272176 6272295 -142511177 + MIR SINE MIR 33 147 -61 478 288 126 28 chr11 6273700 6273915 -142509557 + MIR SINE MIR 7 242 -20 335 269 127 30 chr11 6274548 6274682 -142508790 - L1PA15-16 LINE L1 -5559 1290 1144 228 260 95 47 chr11 6275122 6275291 -142508181 + L1MCc LINE L1 1183 1359 -5064 27 62 0 0 chr11 6275388 6275436 -142508036 + AT_rich Low_complexity Low_complexity 1 48 0 72 96 0 0 chr11 6275533 6275752 -142507720 + AT_rich Low_complexity Low_complexity 1 219 0 208 187 41 0 chr11 6275752 6275875 -142507597 + (TA)n Simple_repeat Simple_repeat 1 128 0 1936 169 82 17 chr11 6275929 6276331 -142507141 - MSTA LTR MaLR 0 428 1 259 246 88 18 chr11 6276355 6276469 -142507003 + L1MCc LINE L1 1952 2073 -5049 523 322 93 58 chr11 6277168 6277565 -142505907 + HAL1 LINE L1 1124 1534 -973 328 313 36 7 chr11 6277752 6277955 -142505517 + L1MCc LINE L1 2831 3037 -3904 4665 33 0 0 chr11 6278388 6279279 -142504193 + L1PA3 LINE L1 5070 6155 0 413 164 277 66 chr11 6279280 6279536 -142503936 + L2 LINE L2 1405 1714 -1600 1196 198 50 4 chr11 6279544 6279782 -142503690 - MLT1A1 LTR MaLR 0 365 117 3028 248 85 58 chr11 6279882 6281042 -142502430 + L2 LINE L2 1723 2914 -400 992 281 82 54 chr11 6282632 6283020 -142500452 + L2 LINE L2 2894 3292 -21 344 250 93 47 chr11 6285107 6285279 -142498193 - L1ME3 LINE L1 -2 6160 5981 603 288 68 10 chr11 6285311 6285603 -142497869 - L1ME3 LINE L1 -268 5902 5594 403 219 172 0 chr11 6285638 6285789 -142497683 - L1MD3 LINE L1 -61 7934 7758 2719 188 102 24 chr11 6286030 6286779 -142496693 - L1MC3 LINE L1 -273 7512 6706 1799 130 7 40 chr11 6287290 6287427 -142496045 + AluSx SINE Alu 1 141 -171 279 0 0 0 chr11 6287427 6287458 -142496014 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1799 130 7 40 chr11 6287458 6287620 -142495852 + AluSx SINE Alu 141 290 -22 842 214 24 29 chr11 6287662 6287872 -142495600 + MER20 DNA MER1_type 7 215 -4 254 250 158 0 chr11 6288236 6288356 -142495116 + MIR SINE MIR 69 207 -55 290 268 134 0 chr11 6288860 6288942 -142494530 - MIR SINE MIR -58 204 112 * 406 333 159 17 chr11 6288940 6289349 -142494123 - L2 LINE L2 -1381 1933 1467 228 350 50 0 chr11 6289752 6289832 -142493640 + MIR SINE MIR 20 103 -159 194 333 133 54 chr11 6289843 6290341 -142493131 - L2 LINE L2 -2238 1076 540 307 322 82 12 chr11 6290451 6290622 -142492850 - MIR SINE MIR -21 241 59 195 42 0 0 chr11 6291645 6291669 -142491803 + (TA)n Simple_repeat Simple_repeat 1 24 0 1633 144 35 75 chr11 6292499 6292846 -142490626 + MER1B DNA MER1_type 1 333 -6 274 229 0 0 chr11 6293382 6293443 -142490029 - L1M4 LINE L1 -1363 4783 4723 239 235 0 0 chr11 6293627 6293678 -142489794 - L1ME4a LINE L1 -87 6034 5984 196 307 67 0 chr11 6293856 6293931 -142489541 - L2 LINE L2 0 3272 3193 31 0 0 0 chr11 6294505 6294536 -142488936 + AT_rich Low_complexity Low_complexity 1 31 0 455 269 66 48 chr11 6296363 6296590 -142486882 - LTR16A LTR ERVL -189 261 31 459 312 88 6 chr11 6297166 6297336 -142486136 - MIR SINE MIR 0 262 79 250 265 103 0 chr11 6297777 6297845 -142485627 + L2 LINE L2 3149 3223 -49 187 79 53 0 chr11 6298023 6298061 -142485411 + (TA)n Simple_repeat Simple_repeat 1 40 0 534 319 58 9 chr11 6298079 6298305 -142485167 - MIR SINE MIR -20 242 6 314 313 10 30 chr11 6298451 6298550 -142484922 - MIR SINE MIR -115 147 51 227 380 78 7 chr11 6298580 6298722 -142484750 - L3 LINE CR1 -234 1343 1192 2295 82 0 23 chr11 6301336 6301641 -142481831 - AluSc SINE Alu -11 298 1 2089 123 7 10 chr11 6302071 6302372 -142481100 + AluSx SINE Alu 1 300 -12 36 53 0 0 chr11 6303098 6303155 -142480317 + AT_rich Low_complexity Low_complexity 1 57 0 6299 127 20 14 chr11 6303314 6304791 -142478681 - L1MA3 LINE L1 0 6305 4823 525 43 0 0 chr11 6306350 6306419 -142477053 + L1M1 LINE L1 5723 5791 -513 322 338 94 57 chr11 6308243 6308471 -142475001 - MIR SINE MIR -2 260 23 275 318 141 5 chr11 6308526 6308724 -142474748 - L1ME LINE L1 -453 5668 5444 33 73 0 0 chr11 6308822 6308890 -142474582 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr11 6312462 6312483 -142470989 + AT_rich Low_complexity Low_complexity 1 21 0 1468 181 148 48 chr11 6312834 6313253 -142470219 - LTR40c LTR ERVL 0 465 5 3605 236 67 40 chr11 6313257 6314346 -142469126 - HERVL40 LTR ERVL 0 5530 4413 412 297 115 50 chr11 6314531 6315312 -142468160 - L1ME LINE L1 -1274 4872 4041 7371 130 43 5 chr11 6315366 6317195 -142466277 - L1PA6 LINE L1 0 6154 4255 943 276 140 23 chr11 6317199 6318198 -142465274 - L1ME LINE L1 -2280 3866 2751 1250 206 39 31 chr11 6318267 6318553 -142464919 - AluJo SINE Alu -22 290 3 308 300 93 0 chr11 6318633 6318773 -142464699 - L1ME LINE L1 -3576 2570 2418 2247 129 0 0 chr11 6319217 6319528 -142463944 - AluSx SINE Alu -1 311 1 778 265 57 33 chr11 6320219 6320464 -142463008 + MIR SINE MIR 1 251 -11 207 167 0 0 chr11 6321244 6321280 -142462192 + (CATA)n Simple_repeat Simple_repeat 2 37 0 483 361 17 11 chr11 6321611 6321791 -142461681 + MER5A DNA MER1_type 8 188 -1 1117 221 32 4 chr11 6321970 6322223 -142461249 - MLT1H1 LTR MaLR 0 555 296 1546 252 143 26 chr11 6322238 6322852 -142460620 - MER50 LTR ERV1 -23 711 26 344 278 87 17 chr11 6322852 6322967 -142460505 - MER50 LTR ERV1 -611 123 1 403 303 98 15 chr11 6322998 6323200 -142460272 - MLT1H1 LTR MaLR -348 219 1 3099 207 59 23 chr11 6323307 6324050 -142459422 - MER21B LTR ERV1 -62 801 32 2965 146 49 12 chr11 6324574 6325144 -142458328 - LTR59 LTR ERV1 -6 591 1 344 303 112 6 chr11 6325163 6325391 -142458081 + L1M4 LINE L1 3691 3949 -2197 568 209 115 0 chr11 6326015 6326163 -142457309 + MER96B DNA MER1_type? 253 417 0 363 285 124 0 chr11 6326230 6326416 -142457056 - L1M4 LINE L1 -2938 3208 3000 562 289 93 50 chr11 6326416 6326780 -142456692 + L2 LINE L2 2934 3313 0 2153 131 73 14 chr11 6327445 6327789 -142455683 - THE1B LTR MaLR 0 364 1 1171 102 71 31 chr11 6327801 6328026 -142455446 + L1MB2 LINE L1 5938 6171 0 196 148 33 33 chr11 6328026 6328061 -142455411 + (TTAAA)n Simple_repeat Simple_repeat 2 39 -23 2497 84 0 0 chr11 6328061 6328372 -142455100 + AluY SINE Alu 1 311 0 196 148 33 33 chr11 6328372 6328397 -142455075 + (TTAAA)n Simple_repeat Simple_repeat 38 62 0 1402 94 11 0 chr11 6328412 6328593 -142454879 + AluSq SINE Alu 1 183 -130 1707 161 42 7 chr11 6328699 6328985 -142454487 - AluJo SINE Alu -16 296 1 659 204 28 99 chr11 6329016 6329134 -142454338 - L1ME2 LINE L1 -169 5995 5870 2350 98 10 0 chr11 6329134 6329439 -142454033 - AluSx SINE Alu -4 308 1 659 204 28 99 chr11 6329439 6329604 -142453868 - L1ME2 LINE L1 -294 5870 5732 314 240 104 48 chr11 6381225 6381350 -142402122 + HAL1 LINE L1 1 132 -2375 1455 150 29 60 chr11 6381831 6381913 -142401559 - MLT1F1 LTR MaLR 0 595 512 2397 93 3 0 chr11 6381913 6382223 -142401249 - AluSp SINE Alu -2 311 1 1455 150 29 60 chr11 6382223 6382423 -142401049 - MLT1F1 LTR MaLR -83 512 294 416 270 18 49 chr11 6382687 6382850 -142400622 - Charlie8 DNA MER1_type -2201 216 59 332 339 48 16 chr11 6382894 6383018 -142400454 + HAL1 LINE L1 754 881 -1626 80 63 0 0 chr11 6383496 6383639 -142399833 + AT_rich Low_complexity Low_complexity 1 143 0 328 164 60 0 chr11 6384169 6384236 -142399236 + MIR SINE MIR 24 94 -168 229 355 21 0 chr11 6385304 6385493 -142397979 - L1M4 LINE L1 -3549 2597 2405 312 286 9 0 chr11 6385504 6385616 -142397856 + L1ME3A LINE L1 5802 5914 -250 309 266 29 86 chr11 6385694 6385833 -142397639 + L1ME3A LINE L1 5963 6093 -77 538 275 68 68 chr11 6386225 6386476 -142396996 - MIR SINE MIR 0 262 12 189 0 0 0 chr11 6386884 6386905 -142396567 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 214 203 0 109 chr11 6387091 6387155 -142396317 + L2 LINE L2 3255 3311 -2 575 190 78 0 chr11 6387366 6387482 -142395990 + MLT2B1 LTR ERVL 2 126 -394 915 258 154 20 chr11 6387761 6388059 -142395413 + MLT2B1 LTR ERVL 129 466 -54 238 50 50 0 chr11 6388148 6388188 -142395284 + (TA)n Simple_repeat Simple_repeat 2 43 0 315 0 0 0 chr11 6388191 6388226 -142395246 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 163 8 127 chr11 6388237 6388630 -142394842 + MER7A DNA MER2_type 1 344 -2 386 61 0 0 chr11 6388640 6388689 -142394783 + MLT2B1 LTR ERVL 472 520 0 242 319 52 43 chr11 6389429 6389545 -142393927 - L2 LINE L2 -6 3266 3150 1116 286 79 44 chr11 6389863 6390021 -142393451 - L2 LINE L2 0 3313 3162 353 32 63 0 chr11 6390021 6390084 -142393388 + (TA)n Simple_repeat Simple_repeat 2 68 0 1116 286 79 44 chr11 6390084 6390665 -142392807 - L2 LINE L2 -151 3162 2472 6132 96 4 30 chr11 6392295 6393225 -142390247 - L1P LINE L1 -3504 2642 1737 * 10599 77 11 1 chr11 6393221 6395126 -142388346 + L1P3 LINE L1 3899 5819 -335 423 217 275 7 chr11 6396159 6396297 -142387175 + MER5A DNA MER1_type 9 183 -6 297 0 0 0 chr11 6396383 6396416 -142387056 + (TA)n Simple_repeat Simple_repeat 1 33 0 592 374 65 39 chr11 6396730 6397037 -142386435 + L2 LINE L2 2013 2311 -1003 1499 230 19 17 chr11 6397037 6397398 -142386074 + MLT1A1 LTR MaLR 2 363 -2 592 374 65 39 chr11 6397398 6397817 -142385655 + L2 LINE L2 2311 2758 -556 5073 217 65 41 chr11 6398354 6398493 -142384979 + L1MC4 LINE L1 6490 6624 -1418 201 39 0 0 chr11 6398493 6398519 -142384953 + (CA)n Simple_repeat Simple_repeat 2 27 0 5073 217 65 41 chr11 6398519 6399895 -142383577 + L1MC4 LINE L1 6624 8041 -1 664 296 79 38 chr11 6400029 6400269 -142383203 + MIR SINE MIR 3 252 -10 552 288 64 38 chr11 6400878 6401114 -142382358 + MIR SINE MIR 1 242 -20 28 71 0 0 chr11 6401243 6401299 -142382173 + AT_rich Low_complexity Low_complexity 1 56 0 988 173 9 33 chr11 6401352 6401566 -142381906 - L1MD1 LINE L1 -248 6388 6180 1945 145 3 0 chr11 6401675 6401978 -142381494 - AluSx SINE Alu -8 304 1 8512 210 64 40 chr11 6401979 6405857 -142377615 - L1MD1 LINE L1 -455 6181 2399 414 0 0 0 chr11 6405857 6405903 -142377569 + (TA)n Simple_repeat Simple_repeat 1 46 0 8582 38 0 20 chr11 6405904 6407760 -142375712 - L1PA5 LINE L1 -7 6147 4313 8512 210 64 40 chr11 6407760 6408543 -142374929 - L1MD1 LINE L1 -4236 2400 1391 22 56 0 0 chr11 6409145 6409181 -142374291 + AT_rich Low_complexity Low_complexity 1 36 0 2139 116 3 17 chr11 6409733 6410034 -142373438 + AluSx SINE Alu 1 297 -15 207 318 118 0 chr11 6410192 6410277 -142373195 + L2 LINE L2 2764 2858 -456 450 367 91 39 chr11 6410520 6411085 -142372387 - L2 LINE L2 -213 3059 2469 229 323 16 0 chr11 6411231 6411293 -142372179 + L2 LINE L2 3186 3248 -24 280 206 16 63 chr11 6412007 6412070 -142371402 + MLT1F LTR MaLR 1 60 -482 1762 180 0 3 chr11 6412087 6412370 -142371102 - AluJo SINE Alu -30 282 1 560 294 0 12 chr11 6412373 6412536 -142370936 + MLT1F LTR MaLR 49 209 -333 1130 65 13 0 chr11 6412639 6412792 -142370680 + L1PA7 LINE L1 5929 6083 -71 1001 176 38 0 chr11 6412832 6413042 -142370430 - L1MD3 LINE L1 -1 7994 7777 506 269 59 0 chr11 6413581 6413700 -142369772 - MER5A DNA MER1_type -62 127 2 431 235 18 71 chr11 6413701 6413871 -142369601 - L1MC5 LINE L1 -876 7085 6925 * 771 255 0 59 chr11 6413867 6414106 -142369366 - L1MC4 LINE L1 -866 7002 6718 614 297 76 10 chr11 6414348 6414651 -142368821 - L1ME4a LINE L1 -269 5852 5530 2460 37 0 10 chr11 6415199 6415493 -142367979 - AluY SINE Alu -20 291 1 665 310 162 18 chr11 6415706 6416093 -142367379 + L2 LINE L2 2687 3127 -186 402 298 121 24 chr11 6416228 6416352 -142367120 + L2 LINE L2 3177 3312 -1 443 215 75 0 chr11 6416487 6416594 -142366878 - MIR SINE MIR -50 212 98 527 231 52 29 chr11 6417534 6417707 -142365765 + L2 LINE L2 2173 2349 -965 508 270 166 43 chr11 6417702 6417980 -142365492 - L2 LINE L2 0 3313 3002 * 433 308 160 0 chr11 6418344 6418500 -142364972 - MER5A DNA MER1_type 0 189 9 270 291 100 18 chr11 6418751 6418861 -142364611 - MIR SINE MIR -108 154 36 187 352 110 11 chr11 6419212 6419303 -142364169 + L2 LINE L2 3169 3268 -4 2086 115 3 0 chr11 6419529 6419816 -142363656 - AluSg SINE Alu -22 288 1 318 306 58 16 chr11 6419906 6420027 -142363445 + MIR SINE MIR 76 201 -61 685 265 85 36 chr11 6420873 6421281 -142362191 + MLT1H LTR MaLR 13 549 0 2607 55 0 0 chr11 6421988 6422295 -142361177 + AluY SINE Alu 1 307 -4 180 0 0 0 chr11 6422295 6422315 -142361157 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 274 376 11 0 chr11 6422965 6423058 -142360414 + LTR67 LTR ERVL 97 190 -367 289 164 36 0 chr11 6423329 6423384 -142360088 + LTR33A LTR ERVL 444 500 -23 201 226 32 0 chr11 6423773 6423835 -142359637 + (TA)n Simple_repeat Simple_repeat 2 65 0 7956 169 53 51 chr11 6424431 6426245 -142357227 + L1MC3 LINE L1 5968 7785 0 1458 64 0 16 chr11 6426391 6426602 -142356870 + AluSq SINE Alu 112 313 0 838 217 87 129 chr11 6426602 6427504 -142355968 + L1MC5 LINE L1 7049 7912 -49 348 218 0 0 chr11 6427537 6427624 -142355848 + (TA)n Simple_repeat Simple_repeat 1 87 0 1434 249 78 11 chr11 6427631 6428005 -142355467 - LTR16A LTR ERVL 0 450 52 1812 169 60 69 chr11 6429178 6429648 -142353824 - MER31B LTR ERV1 0 661 1 584 316 65 71 chr11 6429922 6430371 -142353101 + L2 LINE L2 2827 3272 0 21 0 0 31 chr11 6431185 6431196 -142352276 + AT_rich Low_complexity Low_complexity 1 11 -20 2072 58 11 0 chr11 6431196 6431470 -142352002 - L1PA8 LINE L1 -10 6162 5886 21 0 0 31 chr11 6431470 6431490 -142351982 + AT_rich Low_complexity Low_complexity 11 31 0 892 315 86 47 chr11 6431516 6432307 -142351165 - HAL1 LINE L1 -1590 917 96 1514 257 79 82 chr11 6432401 6432717 -142350755 - L1MC4 LINE L1 0 8042 7727 2414 88 0 7 chr11 6432717 6433023 -142350449 + AluSg SINE Alu 3 306 -4 1514 257 79 82 chr11 6433023 6433618 -142349854 - L1MC4 LINE L1 -315 7727 7132 4879 91 13 4 chr11 6433618 6434308 -142349164 - L1PA16 LINE L1 -11 6155 5460 1514 257 79 82 chr11 6434308 6435611 -142347861 - L1MC4 LINE L1 -910 7132 5842 2071 114 17 3 chr11 6435611 6435925 -142347547 + AluSx SINE Alu 1 312 0 1514 257 79 82 chr11 6435925 6436207 -142347265 - L1MC4 LINE L1 -2200 5842 5561 4657 51 20 3 chr11 6436295 6436883 -142346589 + L1PA7 LINE L1 5556 6153 -1 1480 226 86 47 chr11 6438792 6439278 -142344194 + L1M1 LINE L1 12 516 -7049 * 5131 31 0 6 chr11 6439243 6439878 -142343594 - L1PA3 LINE L1 -3279 2867 2237 21276 26 9 0 chr11 6439878 6443181 -142340291 + L1PA3 LINE L1 2841 6152 -3 337 154 0 0 chr11 6443195 6443260 -142340212 + L1PA5 LINE L1 6084 6148 -6 17745 148 34 12 chr11 6443287 6446241 -142337231 + L1M1 LINE L1 502 3521 -4044 2128 85 0 22 chr11 6446253 6446571 -142336901 + L1MA1 LINE L1 5888 6198 -104 22 0 0 0 chr11 6447801 6447823 -142335649 + AT_rich Low_complexity Low_complexity 1 22 0 1350 153 138 89 chr11 6447968 6448142 -142335330 - Charlie1b DNA MER1_type -2238 523 359 4463 136 20 8 chr11 6448142 6448908 -142334564 - L1MA5 LINE L1 -2 6298 5524 1350 153 138 89 chr11 6448908 6449183 -142334289 - Charlie1b DNA MER1_type -2402 359 52 212 336 143 0 chr11 6449269 6449388 -142334084 + MIR SINE MIR 127 262 0 30 34 0 34 chr11 6450029 6450065 -142333407 + AT_rich Low_complexity Low_complexity 1 36 -21 2874 0 0 0 chr11 6450065 6450372 -142333100 - AluY SINE Alu -4 307 1 30 34 0 34 chr11 6450372 6450394 -142333078 + AT_rich Low_complexity Low_complexity 36 57 0 2185 106 61 35 chr11 6450394 6450771 -142332701 - L1PA16 LINE L1 -6 6160 5774 2100 109 12 34 chr11 6450865 6451185 -142332287 + AluSq SINE Alu 1 313 0 278 250 42 65 chr11 6451318 6451486 -142331986 + L1MEc LINE L1 1399 1562 -4834 22 35 0 0 chr11 6452011 6452040 -142331432 + AT_rich Low_complexity Low_complexity 1 29 0 2210 118 6 13 chr11 6452259 6452573 -142330899 + AluSx SINE Alu 1 312 0 1356 191 93 17 chr11 6452587 6452932 -142330540 + L1M4 LINE L1 4101 4471 -1675 * 1518 227 41 49 chr11 6452917 6453449 -142330023 + L1M4 LINE L1 4747 5274 -872 341 343 7 7 chr11 6453563 6453709 -142329763 + L1M4 LINE L1 4557 4702 -1444 21 0 0 0 chr11 6453840 6453861 -142329611 + AT_rich Low_complexity Low_complexity 1 21 0 3989 164 44 16 chr11 6454237 6454684 -142328788 - L1MA9 LINE L1 -59 6253 5771 2065 112 0 26 chr11 6454684 6454987 -142328485 - AluSx SINE Alu -17 295 1 3989 164 44 16 chr11 6454987 6455354 -142328118 - L1MA9 LINE L1 -541 5771 5416 5141 70 14 0 chr11 6455540 6456207 -142327265 + L1PA8 LINE L1 5488 6163 -9 1189 274 34 62 chr11 6456853 6457383 -142326089 + MER69 DNA AcHobo 697 1211 -1315 1092 202 56 50 chr11 6457386 6457567 -142325905 + MER69 DNA AcHobo 2128 2307 -219 1376 163 48 0 chr11 6457567 6457819 -142325653 + L1PA16 LINE L1 5893 6156 -10 1092 202 56 50 chr11 6457819 6458033 -142325439 + MER69 DNA AcHobo 2307 2525 -1 262 339 51 0 chr11 6458877 6458995 -142324477 - L3 LINE CR1 -17 1560 1437 361 272 120 13 chr11 6459099 6459257 -142324215 + L1M4 LINE L1 4922 5096 -1050 453 337 32 40 chr11 6459274 6459526 -142323946 - MIR SINE MIR -6 256 7 261 239 113 7 chr11 6459529 6459671 -142323801 + L1M4 LINE L1 5104 5260 -886 374 378 54 14 chr11 6459775 6459997 -142323475 + L2 LINE L2 2868 3098 -215 549 264 147 78 chr11 6460251 6460687 -142322785 + MLT1J LTR MaLR 9 474 -37 569 297 109 32 chr11 6460884 6461295 -142322177 - L1ME LINE L1 -367 5797 5355 21 36 0 0 chr11 6461312 6461340 -142322132 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 6461491 6461527 -142321945 + AT_rich Low_complexity Low_complexity 1 36 0 487 288 161 35 chr11 6461752 6462175 -142321297 + L1MC4 LINE L1 4226 4701 -1445 22 0 0 0 chr11 6462230 6462252 -142321220 + AT_rich Low_complexity Low_complexity 1 22 0 455 291 200 15 chr11 6462676 6463151 -142320321 + L1MC4 LINE L1 5255 5817 -1991 2145 132 0 0 chr11 6463450 6463745 -142319727 - AluSx SINE Alu -15 297 3 1671 240 52 75 chr11 6463859 6464491 -142318981 - L1ME3A LINE L1 -9 6161 5547 1881 164 106 13 chr11 6464491 6464870 -142318602 + MLT2D LTR ERVL 1 414 0 1671 240 52 75 chr11 6464870 6464970 -142318502 - L1ME3A LINE L1 -623 5547 5446 447 286 117 34 chr11 6465000 6465527 -142317945 - L1M3 LINE L1 -329 5839 5255 582 311 53 19 chr11 6465583 6465789 -142317683 + MIR SINE MIR 2 214 -48 389 326 117 25 chr11 6465829 6466231 -142317241 - L1M3 LINE L1 -941 5205 4767 301 279 0 0 chr11 6466547 6466608 -142316864 + MER91B DNA MER1_type 1 61 -129 517 277 32 0 chr11 6466896 6467051 -142316421 + MLT1J1 LTR MaLR 1 160 -286 407 234 28 19 chr11 6467087 6467194 -142316278 + MER21B LTR ERV1 1 108 -755 1237 204 29 32 chr11 6467294 6467573 -142315899 + MER21B LTR ERV1 475 752 -111 495 285 140 10 chr11 6467601 6467801 -142315671 + MLT1J2 LTR MaLR 196 421 -29 241 405 72 27 chr11 6468302 6468675 -142314797 + L2 LINE L2 2850 3239 -33 188 271 0 0 chr11 6468816 6468864 -142314608 + L2 LINE L2 3263 3310 -3 747 245 164 2 chr11 6469316 6469751 -142313721 + L1MC4 LINE L1 6468 7072 -970 1066 278 16 0 chr11 6469753 6470066 -142313406 + L1MC4 LINE L1 7239 7556 -486 1797 140 52 3 chr11 6470066 6470352 -142313120 - AluJb SINE Alu -12 300 1 21 57 0 0 chr11 6470872 6470907 -142312565 + AT_rich Low_complexity Low_complexity 1 35 0 526 12 60 0 chr11 6471695 6471778 -142311694 + (TA)n Simple_repeat Simple_repeat 2 89 0 183 42 0 0 chr11 6472529 6472553 -142310919 + (CA)n Simple_repeat Simple_repeat 1 24 0 393 260 122 8 chr11 6473324 6473447 -142310025 + MIR SINE MIR 53 189 -73 3827 271 97 36 chr11 6473453 6475084 -142308388 - L2 LINE L2 0 3313 1551 783 254 15 5 chr11 6475084 6475289 -142308183 - MER63A DNA MER1_type -3 207 1 3827 271 97 36 chr11 6475289 6475402 -142308070 - L2 LINE L2 -1762 1551 1446 25 75 0 0 chr11 6475699 6475752 -142307720 + AT_rich Low_complexity Low_complexity 1 53 0 398 323 124 33 chr11 6475952 6476553 -142306919 + L2 LINE L2 1921 2665 -649 444 280 35 30 chr11 6476609 6476809 -142306663 + L1ME4a LINE L1 5635 5835 -286 350 254 88 18 chr11 6477881 6477995 -142305477 + L2 LINE L2 3151 3272 0 330 270 204 26 chr11 6478305 6478457 -142305015 + L2 LINE L2 2236 2414 -900 623 272 94 6 chr11 6478691 6478741 -142304731 - MIR SINE MIR -1 261 217 184 59 59 0 chr11 6478741 6478775 -142304697 + (TA)n Simple_repeat Simple_repeat 1 36 0 623 272 94 6 chr11 6478775 6478904 -142304568 - MIR SINE MIR -45 217 66 522 325 101 18 chr11 6479138 6479699 -142303773 - HAL1b LINE L1 -682 1686 361 698 365 100 9 chr11 6480948 6481509 -142301963 - L2 LINE L2 -338 2976 2365 920 346 64 10 chr11 6482331 6482739 -142300733 + LTR16A LTR ERVL 16 445 -5 29 28 0 0 chr11 6483266 6483302 -142300170 + AT_rich Low_complexity Low_complexity 1 36 0 291 270 92 46 chr11 6485685 6485859 -142297613 + MLT1K LTR MaLR 174 355 -233 507 194 0 43 chr11 6485965 6486151 -142297321 + GA-rich Low_complexity Low_complexity 1 178 0 182 130 39 26 chr11 6487122 6487199 -142296273 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 487 341 59 15 chr11 6487226 6487634 -142295838 - L1ME LINE L1 -475 5687 5262 1569 92 8 0 chr11 6487716 6487955 -142295517 - L1MA5 LINE L1 -2 6298 6058 2423 45 0 3 chr11 6488024 6488316 -142295156 - AluY SINE Alu -20 291 1 184 298 85 0 chr11 6488686 6488733 -142294739 + L2 LINE L2 3168 3218 -54 667 62 21 0 chr11 6489086 6489183 -142294289 + AluY SINE Alu 213 311 0 300 313 45 18 chr11 6489518 6489630 -142293842 + L2 LINE L2 3152 3266 -6 32 57 0 0 chr11 6489692 6489745 -142293727 + AT_rich Low_complexity Low_complexity 1 53 0 985 145 0 13 chr11 6490120 6490279 -142293193 - FRAM SINE Alu -9 167 11 1427 328 76 57 chr11 6490457 6492157 -142291315 - L1ME LINE L1 -722 5442 3699 319 302 24 40 chr11 6492256 6492382 -142291090 + L2 LINE L2 3190 3313 0 451 354 62 11 chr11 6492522 6492796 -142290676 - HAL1b LINE L1 -759 589 302 1637 264 16 75 chr11 6493820 6494450 -142289022 + MLT1E LTR MaLR 1 593 0 213 39 0 0 chr11 6494809 6494835 -142288637 + (T)n Simple_repeat Simple_repeat 1 26 0 6530 16 10 1 chr11 6494871 6495667 -142287805 - L1HS LINE L1 0 6155 5353 349 23 0 0 chr11 6495664 6495707 -142287765 + L1P LINE L1 1945 1987 -4159 * 876 238 63 0 chr11 6496179 6496385 -142287087 + MIR SINE MIR 1 219 -43 207 0 0 0 chr11 6496922 6496945 -142286527 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 231 315 94 31 chr11 6497574 6497701 -142285771 - L2 LINE L2 -2 3270 3136 180 0 0 0 chr11 6498460 6498480 -142284992 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 637 292 31 122 chr11 6498668 6499434 -142284038 - L2 LINE L2 -1 3312 2616 227 229 38 84 chr11 6499632 6499763 -142283709 + LTR67 LTR ERVL 6 130 -427 * 1679 239 69 58 chr11 6499707 6500227 -142283245 + MLT1F LTR MaLR 7 532 -10 391 334 89 38 chr11 6500263 6500577 -142282895 + LTR67 LTR ERVL 117 446 -111 264 255 28 9 chr11 6500656 6500762 -142282710 - MLT1L LTR MaLR -16 599 492 586 296 11 0 chr11 6500885 6501064 -142282408 - MLT1L LTR MaLR -345 270 90 1036 309 146 6 chr11 6501143 6501664 -142281808 - L2 LINE L2 -683 2631 2038 189 0 0 0 chr11 6501898 6501919 -142281553 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 324 48 0 0 chr11 6502705 6502747 -142280725 + (CA)n Simple_repeat Simple_repeat 2 43 0 552 309 41 37 chr11 6503367 6503613 -142279859 + MIR SINE MIR 5 251 -11 709 261 77 18 chr11 6503833 6504055 -142279417 + MIR SINE MIR 14 248 -14 1973 142 3 0 chr11 6504262 6504568 -142278904 + AluSq SINE Alu 1 307 0 243 246 0 33 chr11 6504951 6505012 -142278460 + CT-rich Low_complexity Low_complexity 3 61 0 354 294 55 0 chr11 6506081 6506190 -142277282 + L3 LINE CR1 272 386 -1191 310 359 41 7 chr11 6506436 6506581 -142276891 + L3 LINE CR1 1067 1216 -361 431 253 116 50 chr11 6506596 6506837 -142276635 + MIR SINE MIR 2 258 -4 237 163 0 0 chr11 6506900 6506949 -142276523 + T-rich Low_complexity Low_complexity 1 49 0 1131 210 213 9 chr11 6507044 6507373 -142276099 - MSTD LTR MaLR 0 396 1 221 348 0 14 chr11 6508068 6508137 -142275335 + MIR SINE MIR 20 87 -175 459 252 122 22 chr11 6508139 6508361 -142275111 - MLT1H LTR MaLR 0 555 312 1030 196 14 9 chr11 6508375 6508594 -142274878 - MLT1A2 LTR MaLR 0 374 155 2457 122 3 0 chr11 6508603 6508972 -142274500 - L1PB1 LINE L1 -1 6150 5781 309 183 0 0 chr11 6508972 6509032 -142274440 + (TA)n Simple_repeat Simple_repeat 2 61 0 324 283 0 22 chr11 6509032 6509124 -142274348 + L1MC4 LINE L1 6614 6703 -1339 * 327 311 0 0 chr11 6509044 6509134 -142274338 - L1MC4 LINE L1 -1339 6703 6614 276 149 0 0 chr11 6509141 6509188 -142274284 + (TA)n Simple_repeat Simple_repeat 2 48 0 3613 131 6 4 chr11 6509188 6510092 -142273380 - L1P5 LINE L1 -360 5791 4888 2191 191 0 0 chr11 6510092 6510548 -142272924 + L1P5 LINE L1 4403 4858 -1288 517 164 207 7 chr11 6510553 6510693 -142272779 - MLT1A2 LTR MaLR -218 156 1 698 256 57 9 chr11 6510774 6510985 -142272487 - MLT1H LTR MaLR -326 223 3 288 293 50 0 chr11 6510988 6511087 -142272385 + MIR SINE MIR 86 189 -73 404 280 96 0 chr11 6511142 6511299 -142272173 - MIR SINE MIR -3 259 88 263 418 7 7 chr11 6511718 6511859 -142271613 + L2 LINE L2 2509 2649 -665 186 122 41 20 chr11 6512383 6512432 -142271040 + GA-rich Low_complexity Low_complexity 3 52 0 385 240 34 75 chr11 6512451 6512597 -142270875 + MIR SINE MIR 82 221 -41 306 0 0 0 chr11 6512597 6512631 -142270841 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 169 68 34 chr11 6512682 6512741 -142270731 + L3 LINE CR1 1514 1574 -3 406 296 152 73 chr11 6513348 6514215 -142269257 - L1M2 LINE L1 -5538 1311 550 1852 243 109 46 chr11 6516697 6517323 -142266149 - L2 LINE L2 -339 2975 2311 408 342 32 11 chr11 6517437 6517624 -142265848 - L3 LINE CR1 -176 1401 1211 416 222 193 22 chr11 6517789 6517924 -142265548 + MER5A DNA MER1_type 29 186 -3 258 279 51 13 chr11 6517941 6518020 -142265452 - MIR SINE MIR -70 138 57 * 560 316 113 42 chr11 6518015 6518428 -142265044 - L3 LINE CR1 -588 989 547 563 162 19 195 chr11 6518428 6518638 -142264834 + MER5B DNA MER1_type 4 176 -2 334 224 241 9 chr11 6520084 6520200 -142263272 + MIR SINE MIR 2 144 -118 408 161 69 0 chr11 6520392 6520479 -142262993 + MIR SINE MIR 68 160 -102 606 154 173 0 chr11 6520493 6520649 -142262823 - MER53 DNA DNA -6 183 1 197 333 118 0 chr11 6520650 6520752 -142262720 + MIR SINE MIR 149 262 0 219 410 38 0 chr11 6521593 6521698 -142261774 - L2 LINE L2 -8 3264 3156 4373 273 66 29 chr11 6522876 6524541 -142258931 - L2 LINE L2 -2 3311 1586 213 271 0 17 chr11 6524582 6524641 -142258831 - L2 LINE L2 -1075 2239 2182 1873 157 68 6 chr11 6524641 6524979 -142258493 - MLT1A1 LTR MaLR 0 365 7 4279 244 136 21 chr11 6524986 6526490 -142256982 - L2 LINE L2 -1129 2185 510 381 293 126 18 chr11 6526603 6526825 -142256647 - L2 LINE L2 -826 2488 2243 270 377 66 0 chr11 6526882 6526988 -142256484 + MER5B DNA MER1_type 2 114 -64 389 309 50 53 chr11 6529063 6529442 -142254030 + L1 LINE L1 2970 3347 -2799 280 209 110 11 chr11 6529751 6529842 -142253630 - L1ME LINE L1 -477 5644 5545 281 219 14 17 chr11 6529865 6529953 -142253519 + L1 LINE L1 3604 3690 -2456 23 0 0 0 chr11 6530123 6530146 -142253326 + AT_rich Low_complexity Low_complexity 1 23 0 1726 216 43 11 chr11 6530225 6530669 -142252803 - L1MB8 LINE L1 -7 6171 5714 670 284 67 69 chr11 6530894 6531370 -142252102 - MLT1J LTR MaLR -31 480 6 25 0 0 0 chr11 6531682 6531707 -142251765 + AT_rich Low_complexity Low_complexity 1 25 0 390 21 0 0 chr11 6532326 6532373 -142251099 + (CA)n Simple_repeat Simple_repeat 2 48 0 28 29 0 0 chr11 6532659 6532694 -142250778 + AT_rich Low_complexity Low_complexity 1 35 0 2212 102 0 0 chr11 6533067 6533374 -142250098 - AluY SINE Alu 0 307 1 512 280 63 21 chr11 6533544 6533687 -142249785 + MIR SINE MIR 23 171 -91 203 361 0 15 chr11 6533818 6533948 -142249524 + CT-rich Low_complexity Low_complexity 4 131 0 703 291 60 98 chr11 6534031 6534512 -142248960 - L2 LINE L2 -4 3268 2806 204 156 22 0 chr11 6534822 6534867 -142248605 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2476 40 0 0 chr11 6535287 6535583 -142247889 + L1PA8 LINE L1 5874 6169 -3 2228 103 10 3 chr11 6535823 6536123 -142247349 - AluSx SINE Alu -10 302 1 568 317 204 24 chr11 6536716 6537293 -142246179 + L2 LINE L2 1709 2389 -925 490 209 243 46 chr11 6537266 6537529 -142245943 + L2 LINE L2 2932 3246 -67 * 507 353 55 36 chr11 6537625 6537988 -142245484 + L2 LINE L2 2417 2786 -528 311 313 139 72 chr11 6538087 6538271 -142245201 + L2 LINE L2 2918 3088 -184 2049 110 0 28 chr11 6538271 6538594 -142244878 + AluSg SINE Alu 1 315 0 311 313 139 72 chr11 6538594 6538740 -142244732 + L2 LINE L2 3088 3271 -1 2182 115 17 136 chr11 6539434 6539913 -142243559 - MSTC LTR MaLR -6 422 1 326 325 156 12 chr11 6540643 6540803 -142242669 + L3 LINE CR1 206 388 -1189 193 246 145 29 chr11 6541108 6541177 -142242295 - MER5A DNA MER1_type -67 122 46 * 325 323 0 11 chr11 6541118 6541211 -142242261 + MER5A DNA MER1_type 98 189 0 2591 203 44 32 chr11 6541559 6542235 -142241237 + MER63C DNA MER1_type 1 684 -246 763 197 19 110 chr11 6542313 6542577 -142240895 + MER63C DNA MER1_type 691 930 0 26 0 0 0 chr11 6544363 6544389 -142239083 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 6544415 6544450 -142239022 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 128 0 0 chr11 6544459 6544498 -142238974 + (GA)n Simple_repeat Simple_repeat 1 39 0 306 210 101 67 chr11 6544523 6544642 -142238830 - HAL1 LINE L1 -106 2401 2279 310 195 12 49 chr11 6544654 6544736 -142238736 - L1MC4 LINE L1 -1339 6703 6625 26 30 0 0 chr11 6545072 6545105 -142238367 + AT_rich Low_complexity Low_complexity 1 33 0 255 271 14 0 chr11 6545209 6545279 -142238193 + MIR SINE MIR 85 155 -107 776 271 121 16 chr11 6545841 6546294 -142237178 - HAL1 LINE L1 -761 1746 1246 2555 102 19 11 chr11 6546673 6547045 -142236427 - THE1C LTR MaLR 0 375 1 10050 114 52 5 chr11 6547045 6548553 -142234919 - THE1C-int LTR MaLR 0 1580 1 2537 87 11 8 chr11 6548558 6548927 -142234545 - THE1C LTR MaLR -5 370 1 1039 153 58 36 chr11 6550784 6551007 -142232465 + L1MB3 LINE L1 5949 6176 -7 779 303 25 8 chr11 6552342 6552779 -142230693 - LTR33 LTR ERVL 0 521 14 187 225 167 25 chr11 6553935 6554055 -142229417 - MIR3 SINE MIR -61 147 11 1150 175 0 11 chr11 6555460 6555779 -142227693 - MLT1A1 LTR MaLR 0 365 1 2302 173 23 17 chr11 6555779 6556247 -142227225 - MLT1A1-int LTR MaLR 0 1735 1214 3209 173 14 53 chr11 6556537 6557230 -142226242 - MLT1A1-int LTR MaLR -1069 666 1 244 282 167 0 chr11 6557348 6557426 -142226046 + L2 LINE L2 3201 3291 -22 301 355 161 0 chr11 6557655 6557810 -142225662 - MIR SINE MIR -77 185 6 183 205 0 0 chr11 6558048 6558087 -142225385 + CT-rich Low_complexity Low_complexity 4 42 0 226 122 0 0 chr11 6558106 6558155 -142225317 - L1MC1 LINE L1 -2 6331 6283 243 0 0 0 chr11 6558565 6558592 -142224880 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 345 24 0 0 chr11 6558591 6558633 -142224839 + (GA)n Simple_repeat Simple_repeat 1 42 0 441 194 241 36 chr11 6558750 6559003 -142224469 - L1MC5 LINE L1 -32 7929 7625 894 244 148 46 chr11 6559067 6559784 -142223688 - HAL1 LINE L1 -628 1879 1090 594 196 98 25 chr11 6560959 6561122 -142222350 - MER91B DNA MER1_type -2 188 14 303 326 42 0 chr11 6561172 6561267 -142222205 - L2 LINE L2 -18 3254 3156 478 267 0 8 chr11 6561483 6561614 -142221858 - MER94 DNA DNA 0 134 5 236 324 0 0 chr11 6561872 6561940 -142221532 - MLT1I LTR MaLR -244 165 98 484 336 8 0 chr11 6563090 6563218 -142220254 + L2 LINE L2 3141 3269 -3 875 290 126 9 chr11 6563504 6563939 -142219533 + LTR16C LTR ERVL 1 486 -5 459 318 76 21 chr11 6565079 6565315 -142218157 - MIR SINE MIR 0 262 14 470 304 154 0 chr11 6565522 6565749 -142217723 + MIR SINE MIR 1 262 0 197 328 0 16 chr11 6567726 6567790 -142215682 - L3 LINE CR1 -3 1574 1512 741 319 57 15 chr11 6568033 6568437 -142215035 + L2 LINE L2 2862 3282 -31 2172 132 0 10 chr11 6571635 6571939 -142211533 - AluSx SINE Alu -11 301 1 2407 86 0 0 chr11 6571950 6572251 -142211221 - AluY SINE Alu -10 301 1 832 167 7 7 chr11 6572501 6572651 -142210821 + AluSp/q SINE Alu 161 310 -3 26 50 0 0 chr11 6574338 6574378 -142209094 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr11 6577442 6577486 -142205986 + AT_rich Low_complexity Low_complexity 1 44 0 300 230 24 103 chr11 6577524 6577650 -142205822 - L1ME3 LINE L1 -93 6138 6023 401 277 115 49 chr11 6577807 6578258 -142205214 - L1ME3 LINE L1 -346 5885 5405 555 265 34 20 chr11 6578316 6578614 -142204858 - L1ME3 LINE L1 -884 5331 5030 1672 182 32 46 chr11 6578625 6578998 -142204474 - MLT1A2 LTR MaLR -6 368 1 557 262 89 52 chr11 6579102 6579583 -142203889 - L1ME3 LINE L1 -1315 4900 4402 2085 120 10 0 chr11 6579643 6579934 -142203538 - AluSq SINE Alu -19 294 1 616 275 27 8 chr11 6580054 6580312 -142203160 - L1ME3 LINE L1 -2259 3956 3694 291 62 0 0 chr11 6580480 6580563 -142202909 - Alu SINE Alu 0 336 254 268 233 31 70 chr11 6580618 6580747 -142202725 - L1ME3 LINE L1 -4738 1658 1535 309 349 120 5 chr11 6581094 6581286 -142202186 - L1ME3 LINE L1 -5840 365 152 311 384 90 35 chr11 6581608 6581897 -142201575 + L2 LINE L2 2967 3271 -1 1366 171 65 92 chr11 6582843 6583310 -142200162 - MER66A LTR ERV1 0 478 97 783 196 4 92 chr11 6583371 6583600 -142199872 + MER63A DNA MER1_type 1 209 -1 583 281 40 37 chr11 6584219 6584547 -142198925 - L1ME3A LINE L1 -221 5932 5604 1130 298 107 40 chr11 6584655 6585115 -142198357 - L1ME3A LINE L1 -1874 4255 3827 183 80 0 0 chr11 6585115 6585140 -142198332 + (TG)n Simple_repeat Simple_repeat 2 26 0 1130 298 107 40 chr11 6585140 6586171 -142197301 - L1ME3A LINE L1 -2302 3827 2664 11407 32 1 1 chr11 6586432 6587874 -142195598 - L1PA2 LINE L1 -1493 4653 3212 7915 8 0 4 chr11 6587874 6589432 -142194040 + L1PA2 LINE L1 4624 6155 0 261 308 22 11 chr11 6589454 6589636 -142193836 - L1ME3A LINE L1 -3853 2276 2093 21 36 0 0 chr11 6589644 6589672 -142193800 + AT_rich Low_complexity Low_complexity 1 28 0 628 273 90 17 chr11 6590308 6590689 -142192783 - L1MEd LINE L1 -4862 1257 908 1287 189 56 50 chr11 6591356 6591751 -142191721 + L1ME1 LINE L1 5644 6028 -138 186 396 36 0 chr11 6591913 6592024 -142191448 - L2 LINE L2 -1683 1631 1517 1849 94 0 0 chr11 6592025 6592258 -142191214 - AluSq SINE Alu -21 292 60 1255 100 6 0 chr11 6592258 6592418 -142191054 - AluSq SINE Alu -152 161 1 234 357 14 14 chr11 6592530 6592673 -142190799 + MER117 DNA MER1_type 2 144 -53 1350 143 0 63 chr11 6592815 6593053 -142190419 + AluJb SINE Alu 68 290 -22 1310 264 33 24 chr11 6593345 6593796 -142189676 - LTR16A1 LTR ERVL -2 455 1 589 307 126 69 chr11 6595103 6595686 -142187786 - L2 LINE L2 -6 3266 2656 2883 213 37 43 chr11 6595778 6596664 -142186808 - L1ME1 LINE L1 -4 6162 5282 * 18096 189 10 16 chr11 6596633 6601800 -142181672 - L1PA13 LINE L1 -5 7596 2471 2123 319 6 9 chr11 6601872 6602552 -142180920 - L1PA13 LINE L1 -5936 1645 968 2528 124 8 3 chr11 6602618 6602980 -142180492 + THE1B LTR MaLR 1 364 0 1929 164 40 11 chr11 6603124 6603478 -142179994 - THE1B LTR MaLR 0 364 1 11519 95 8 4 chr11 6603478 6605052 -142178420 - THE1B-int LTR MaLR 0 1580 1 2237 105 44 36 chr11 6605052 6605413 -142178059 - THE1B LTR MaLR 0 364 1 2474 209 63 37 chr11 6605545 6606251 -142177221 - L1M4 LINE L1 -803 5343 4610 306 0 0 0 chr11 6606251 6606285 -142177187 + (CA)n Simple_repeat Simple_repeat 2 35 0 2474 209 63 37 chr11 6606285 6606438 -142177034 - L1M4 LINE L1 -1536 4610 4462 1066 259 41 12 chr11 6606441 6606785 -142176687 - L1MEc LINE L1 -5999 397 44 1518 307 87 60 chr11 6606785 6607896 -142175576 - L2 LINE L2 -809 2505 1365 227 210 16 32 chr11 6608119 6608181 -142175291 - L1ME4a LINE L1 -82 6039 5979 2127 124 0 10 chr11 6608555 6608853 -142174619 - AluSq SINE Alu -18 295 1 261 0 0 0 chr11 6610007 6610036 -142173436 + (T)n Simple_repeat Simple_repeat 1 29 0 1072 129 72 5 chr11 6610501 6610694 -142172778 + L1MB4 LINE L1 5975 6180 0 237 33 0 0 chr11 6610697 6610727 -142172745 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 285 136 56 chr11 6610977 6611191 -142172281 - MIR SINE MIR -29 233 3 282 167 15 30 chr11 6614191 6614257 -142169215 + Charlie7 DNA MER1_type 41 105 -2507 1822 230 127 44 chr11 6614379 6615087 -142168385 + LTR41 LTR ERVL 1 767 -6 382 147 100 73 chr11 6615097 6615247 -142168225 - Charlie7 DNA MER1_type -28 2584 2431 276 202 73 65 chr11 6615268 6615392 -142168080 - Charlie7 DNA MER1_type -1891 721 597 21 0 0 0 chr11 6615452 6615473 -142167999 + AT_rich Low_complexity Low_complexity 1 21 0 291 271 110 8 chr11 6615530 6615648 -142167824 + L2 LINE L2 2630 2759 -555 236 241 203 45 chr11 6616244 6616377 -142167095 + MIR SINE MIR 109 262 0 218 286 0 0 chr11 6616770 6616840 -142166632 + L2 LINE L2 2994 3063 -209 228 258 90 22 chr11 6617017 6617106 -142166366 - MIR3 SINE MIR -28 180 86 228 232 85 24 chr11 6617229 6617311 -142166161 + L2 LINE L2 3182 3268 -4 281 347 146 22 chr11 6618130 6618398 -142165074 - L2 LINE L2 0 3313 3013 271 367 31 56 chr11 6618411 6618607 -142164865 - L2 LINE L2 -458 2856 2666 341 295 37 29 chr11 6619028 6619272 -142164200 - L1MDa LINE L1 -1435 5105 4860 308 304 88 35 chr11 6619272 6619499 -142163973 - L2 LINE L2 -23 3290 3052 778 277 126 47 chr11 6619579 6620172 -142163300 - L1MDa LINE L1 -1776 4764 4066 8505 35 0 0 chr11 6620172 6621967 -142161505 - L1PA3 LINE L1 0 6155 4357 778 277 126 47 chr11 6621967 6622326 -142161146 - L1MDa LINE L1 -2474 4066 3737 435 314 61 10 chr11 6622574 6622982 -142160490 - L1MDa LINE L1 -3208 3332 2904 2008 139 33 0 chr11 6623403 6623752 -142159720 - AluSx SINE Alu 0 359 1 251 242 95 32 chr11 6624001 6624256 -142159216 - L1MDa LINE L1 -3827 2713 2446 252 0 0 0 chr11 6624267 6624295 -142159177 + (T)n Simple_repeat Simple_repeat 1 28 0 265 394 0 15 chr11 6624426 6624558 -142158914 + L2 LINE L2 2562 2691 -623 921 342 138 35 chr11 6624647 6625684 -142157788 - L2 LINE L2 -839 2475 1332 319 277 77 108 chr11 6625772 6625902 -142157570 - MIR SINE MIR -105 157 32 268 278 48 63 chr11 6626817 6626943 -142156529 + L2 LINE L2 3149 3272 0 308 306 7 35 chr11 6627624 6627768 -142155704 - L1ME4a LINE L1 -112 6009 5870 237 287 105 27 chr11 6627917 6628213 -142155259 - L1ME4a LINE L1 -320 5801 5483 21 0 0 0 chr11 6628225 6628246 -142155226 + AT_rich Low_complexity Low_complexity 1 21 0 2365 32 39 39 chr11 6628390 6628698 -142154774 - AluY SINE Alu -3 308 1 282 270 37 42 chr11 6628809 6629024 -142154448 - L1ME4a LINE L1 -2341 5467 5254 820 222 74 17 chr11 6629181 6629411 -142154061 - MIR SINE MIR -2 260 18 3861 56 4 0 chr11 6629677 6630163 -142153309 - L1PA8 LINE L1 -11 6161 5674 3660 82 15 6 chr11 6630170 6631027 -142152445 - L1P3 LINE L1 -368 5786 4920 381 22 0 0 chr11 6631096 6631142 -142152330 + (CA)n Simple_repeat Simple_repeat 1 46 0 1926 145 0 6 chr11 6631222 6631539 -142151933 - L1PB1 LINE L1 -3 6148 5834 761 232 46 12 chr11 6631702 6631943 -142151529 + L1MB7 LINE L1 5935 6183 -1 257 333 25 0 chr11 6631998 6632160 -142151312 + Tigger8 DNA MER2_type 290 455 -211 311 322 80 36 chr11 6632361 6632662 -142150810 - L1ME4a LINE L1 -1325 4821 4508 2559 186 111 43 chr11 6632833 6633619 -142149853 - L1ME2 LINE L1 -9 6155 5317 1057 240 5 0 chr11 6633640 6633848 -142149624 - AluJb SINE Alu -20 292 84 358 162 0 15 chr11 6633863 6633931 -142149541 - FLAM SINE Alu -10 123 57 361 273 96 20 chr11 6634261 6634510 -142148962 - L1ME2 LINE L1 -2191 3955 3688 317 194 14 0 chr11 6634972 6635044 -142148428 + MER116 DNA Mariner 2 74 -6 8298 79 6 0 chr11 6635241 6637150 -142146322 - L1PA7 LINE L1 0 6154 4236 876 256 176 36 chr11 6637150 6637541 -142145931 + L2 LINE L2 2867 3312 -1 494 157 12 11 chr11 6637568 6637726 -142145746 + CT-rich Low_complexity Low_complexity 1 158 0 241 323 65 0 chr11 6638127 6638220 -142145252 + MIR SINE MIR 18 116 -92 246 255 0 0 chr11 6638496 6638547 -142144925 - L2 LINE L2 -23 3290 3240 259 275 66 22 chr11 6638565 6638656 -142144816 - MIR SINE MIR -30 232 138 451 237 61 9 chr11 6639136 6639250 -142144222 + MIR SINE MIR 24 143 -119 191 325 24 0 chr11 6639629 6639712 -142143760 - L2 LINE L2 -527 2787 2703 284 355 107 25 chr11 6640846 6641043 -142142429 - L3 LINE CR1 -227 1350 1138 5568 84 24 16 chr11 6641087 6641906 -142141566 + L1MA1 LINE L1 5473 6298 -4 22 56 0 0 chr11 6641938 6641974 -142141498 + AT_rich Low_complexity Low_complexity 1 36 0 990 328 177 16 chr11 6642020 6642709 -142140763 - L3 LINE CR1 -550 1027 228 687 268 97 68 chr11 6643548 6643973 -142139499 - L2 LINE L2 -695 2619 2183 246 325 44 100 chr11 6644986 6645146 -142138326 - MIR SINE MIR -70 192 42 483 221 177 12 chr11 6645211 6645379 -142138093 - HAL1 LINE L1 -93 2414 2275 285 51 0 0 chr11 6645379 6645418 -142138054 + (CA)n Simple_repeat Simple_repeat 1 39 0 483 221 177 12 chr11 6645418 6645571 -142137901 - HAL1 LINE L1 -232 2275 2040 2000 260 70 55 chr11 6645571 6646625 -142136847 + L2 LINE L2 2241 3313 0 330 26 0 0 chr11 6646657 6646696 -142136776 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 154 18 35 chr11 6646813 6646982 -142136490 + L1PA13 LINE L1 5995 6160 -3 1772 274 90 64 chr11 6647003 6647505 -142135967 - L1M4 LINE L1 -1302 4844 4357 7292 40 0 11 chr11 6647505 6648637 -142134835 + L1PA4 LINE L1 5033 6154 -1 1772 274 90 64 chr11 6648637 6650134 -142133338 - L1M4 LINE L1 -1789 4357 2793 653 225 46 0 chr11 6650336 6650487 -142132985 + MER77 LTR ERV1 1 158 -447 601 158 0 0 chr11 6650494 6650589 -142132883 + MER77 LTR ERV1 511 605 0 1825 123 40 7 chr11 6652452 6652753 -142130719 - L1PA6 LINE L1 -58 6096 5786 4359 169 42 28 chr11 6653228 6654029 -142129443 - L1PA16 LINE L1 -1 6165 5334 1571 185 0 50 chr11 6654029 6654332 -142129140 + AluJb SINE Alu 1 288 -24 4359 169 42 28 chr11 6654332 6654566 -142128906 - L1PA16 LINE L1 -832 5334 5105 10552 219 30 18 chr11 6654709 6656672 -142126800 - L1PA15-16 LINE L1 -869 5980 4042 4938 32 0 0 chr11 6656672 6657256 -142126216 - L1PA4 LINE L1 0 6155 5572 10552 219 30 18 chr11 6657256 6657733 -142125739 - L1PA15-16 LINE L1 -2807 4042 3572 1092 117 0 0 chr11 6657733 6657895 -142125577 - L1PB1 LINE L1 -2 6149 5988 10552 219 30 18 chr11 6657895 6658771 -142124701 - L1PA15-16 LINE L1 -3277 3572 2627 1677 224 91 83 chr11 6658791 6659527 -142123945 - L1ME1 LINE L1 -5 6230 5489 4461 257 84 27 chr11 6659542 6661114 -142122358 - L1ME1 LINE L1 -806 5409 3928 1873 78 0 4 chr11 6661114 6661346 -142122126 - AluY SINE Alu -5 306 76 4461 257 84 27 chr11 6661346 6661406 -142122066 - L1ME1 LINE L1 -2287 3928 3873 15456 137 29 33 chr11 6661406 6664147 -142119325 + Tigger4(Zombi) DNA MER2_type 1 2731 0 4461 257 84 27 chr11 6664147 6664857 -142118615 - L1ME1 LINE L1 -2342 3873 2909 1083 246 71 16 chr11 6664962 6665549 -142117923 - L1ME1 LINE L1 -3594 2621 2031 2152 228 49 72 chr11 6665551 6665813 -142117659 - L1MEc LINE L1 -3009 3206 2940 1828 157 35 7 chr11 6665813 6666099 -142117373 + AluJo SINE Alu 1 294 -18 2152 228 49 72 chr11 6666099 6667121 -142116351 - L1MEc LINE L1 -3275 2940 1970 319 286 11 0 chr11 6667194 6667285 -142116187 - MLT1K LTR MaLR -330 258 167 1032 186 83 10 chr11 6667732 6667936 -142115536 - MER20 DNA MER1_type 0 219 1 222 150 0 0 chr11 6668175 6668215 -142115257 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 352 180 90 60 chr11 6668465 6668565 -142114907 - L2 LINE L2 -17 3296 3194 12249 182 54 28 chr11 6668566 6669068 -142114404 - L1MA4A LINE L1 -7 6998 6510 297 0 0 0 chr11 6669068 6669101 -142114371 + (TA)n Simple_repeat Simple_repeat 2 34 0 12249 182 54 28 chr11 6669101 6669894 -142113578 - L1MA4A LINE L1 -495 6510 5739 2928 6 0 0 chr11 6669894 6670212 -142113260 - AluYb8 SINE Alu 0 318 1 12249 182 54 28 chr11 6670212 6670656 -142112816 - L1MA4A LINE L1 -1266 5739 5308 2218 89 7 0 chr11 6670656 6670960 -142112512 - AluSp SINE Alu 0 306 1 12249 182 54 28 chr11 6670960 6673388 -142110084 - L1MA4A LINE L1 -1697 5308 2944 2290 114 0 0 chr11 6673388 6673687 -142109785 - AluSq SINE Alu -14 299 1 12249 182 54 28 chr11 6673687 6676266 -142107206 - L1MA4A LINE L1 -4061 2944 43 741 211 0 0 chr11 6676296 6676429 -142107043 - FLAM_A SINE Alu 0 133 1 235 235 102 31 chr11 6676649 6676747 -142106725 + L2 LINE L2 3164 3268 -4 938 258 67 0 chr11 6678760 6679000 -142104472 + MIR SINE MIR 7 262 0 1524 191 86 3 chr11 6679007 6679322 -142104150 - MER2 DNA MER2_type 0 344 4 2218 116 3 0 chr11 6682147 6682441 -142101031 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr11 6682918 6682941 -142100531 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 258 90 17 chr11 6683501 6683589 -142099883 + MIR SINE MIR 9 101 -107 534 367 25 108 chr11 6683591 6684139 -142099333 - MLT1J LTR MaLR -7 504 2 240 301 29 19 chr11 6684146 6684249 -142099223 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 185 378 61 0 chr11 6684293 6684375 -142099097 - L2 LINE L2 -49 3223 3137 305 258 0 0 chr11 6685553 6685615 -142097857 + MLT1J2 LTR MaLR 389 450 0 584 308 94 26 chr11 6685946 6686180 -142097292 + MIR SINE MIR 9 258 -4 724 300 38 9 chr11 6889430 6889664 -141893808 + MIR SINE MIR 22 262 0 8119 22 0 1 chr11 6889796 6891348 -141892124 - L1PA3 LINE L1 -223 5932 4383 284 300 24 24 chr11 6891630 6891800 -141891672 + (CGAGG)n Simple_repeat Simple_repeat 2 171 0 1199 149 5 36 chr11 6893367 6893588 -141889884 - AluJo SINE Alu -98 214 1 1513 116 0 35 chr11 6893704 6893936 -141889536 - L1PA8A LINE L1 0 6131 5908 281 317 8 8 chr11 6894403 6894526 -141888946 + GA-rich Low_complexity Low_complexity 5 127 0 259 155 24 32 chr11 6895203 6895333 -141888139 + C-rich Low_complexity Low_complexity 1 128 0 750 317 75 36 chr11 6896305 6896693 -141886779 + L2 LINE L2 2870 3272 0 304 235 54 5 chr11 6897135 6897231 -141886241 - MIR SINE MIR -62 146 49 1463 138 94 0 chr11 6897258 6897482 -141885990 - AluJo SINE Alu -57 255 11 481 298 137 6 chr11 6898089 6898250 -141885222 + MIR SINE MIR 46 227 -35 1668 238 96 38 chr11 6898982 6899688 -141883784 + L1M1 LINE L1 2286 3032 -4533 1428 109 5 0 chr11 6899720 6899904 -141883568 + AluSx SINE Alu 1 185 -127 4892 136 31 31 chr11 6899904 6901269 -141882203 + L1M2 LINE L1 4453 5813 -478 345 257 7 44 chr11 6902903 6903039 -141880433 + GA-rich Low_complexity Low_complexity 4 134 0 528 293 47 60 chr11 6903101 6903316 -141880156 + MIR SINE MIR 2 213 -49 327 219 124 52 chr11 6903623 6903762 -141879710 - MIR SINE MIR -52 156 2 328 219 105 79 chr11 6904306 6904420 -141879052 - L2 LINE L2 -34 3238 3122 298 192 128 0 chr11 6904523 6904601 -141878871 - MIR3 SINE MIR -37 171 84 1700 102 9 0 chr11 6904798 6905023 -141878449 - AluSq SINE Alu -86 227 1 309 320 19 39 chr11 6905054 6905260 -141878212 - L1ME LINE L1 -306 5815 5614 602 238 56 14 chr11 6905324 6905467 -141878005 + MIR SINE MIR 44 192 -70 194 345 0 0 chr11 6906610 6906668 -141876804 + MIR SINE MIR 201 258 -4 202 298 41 135 chr11 6907073 6907489 -141875983 + L2 LINE L2 2596 2972 -342 207 233 0 0 chr11 6907500 6907543 -141875929 + L2 LINE L2 3214 3256 -16 1308 111 79 14 chr11 6907974 6908190 -141875282 + MER4E LTR ERV1 536 765 -1 318 336 47 63 chr11 6908434 6908815 -141874657 - L1ME LINE L1 -297 5867 5493 189 121 0 0 chr11 6909480 6909513 -141873959 + (T)n Simple_repeat Simple_repeat 1 33 0 1744 29 10 0 chr11 6909515 6909723 -141873749 - L1PA2 LINE L1 -4 6151 5942 1624 161 4 11 chr11 6909829 6910090 -141873382 - AluJo SINE Alu -53 259 1 353 302 158 7 chr11 6911448 6911587 -141871885 + MIR3 SINE MIR 49 208 0 348 251 99 34 chr11 6911711 6911881 -141871591 + MIR SINE MIR 16 192 -70 238 257 204 0 chr11 6911961 6912074 -141871398 - MIR SINE MIR -12 250 115 1331 74 21 11 chr11 6912975 6913164 -141870308 + AluY SINE Alu 106 296 -15 380 368 61 0 chr11 6913184 6913347 -141870125 - L1M4 LINE L1 -2610 4496 4324 231 61 0 0 chr11 6913481 6913514 -141869958 + (GA)n Simple_repeat Simple_repeat 1 33 0 292 299 49 28 chr11 6915949 6916093 -141867379 - MIR SINE MIR -72 190 44 584 95 12 0 chr11 6916322 6916406 -141867066 - PABL_B LTR ERV1 0 667 583 1098 109 0 44 chr11 6916510 6916693 -141866779 - MER4E LTR ERV1 -244 522 348 1783 113 164 80 chr11 6916767 6917140 -141866332 + MER4A LTR ERV1 261 664 0 1688 154 19 70 chr11 6917140 6917471 -141866001 - MER4E LTR ERV1 -415 351 39 2305 90 3 0 chr11 6917471 6917759 -141865713 - AluSc SINE Alu -9 300 12 1688 154 19 70 chr11 6917759 6917797 -141865675 - MER4E LTR ERV1 -727 39 1 21 0 0 0 chr11 6918286 6918307 -141865165 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 6918539 6918560 -141864912 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1104 70 0 0 chr11 6918644 6918773 -141864699 + AluY SINE Alu 1 129 -182 2835 202 97 68 chr11 6918906 6919047 -141864425 - L1M4 LINE L1 -4877 2160 2025 2321 121 0 6 chr11 6919047 6919362 -141864110 - AluSq SINE Alu 0 313 1 2835 202 97 68 chr11 6919362 6920361 -141863111 - L1M4 LINE L1 -5012 2025 978 969 274 62 22 chr11 6920636 6921037 -141862435 + L1ME4a LINE L1 5492 5908 -213 2207 97 0 17 chr11 6921146 6921458 -141862014 - AluSx SINE Alu 0 307 1 301 215 0 15 chr11 6921458 6921523 -141861949 + MLT1H1 LTR MaLR 487 550 -5 385 259 46 30 chr11 6921908 6922039 -141861433 - MER5B DNA MER1_type -11 167 35 2473 73 0 3 chr11 6922128 6922431 -141861041 - AluY SINE Alu -9 302 1 480 204 250 66 chr11 6922513 6922575 -141860897 - MIR SINE MIR -12 250 201 2106 113 10 32 chr11 6922575 6922884 -141860588 - AluSx SINE Alu -10 302 1 480 204 250 66 chr11 6922884 6923017 -141860455 - MIR SINE MIR -61 201 19 339 224 168 19 chr11 6923115 6923222 -141860250 + L2 LINE L2 3150 3272 0 181 292 42 33 chr11 6924038 6924158 -141859314 + MIR SINE MIR 44 164 -98 215 357 188 0 chr11 6924478 6924590 -141858882 - MIR SINE MIR -73 189 57 866 287 12 16 chr11 6925105 6925352 -141858120 - MIR SINE MIR -1 261 16 459 157 0 0 chr11 6925382 6925471 -141858001 + (CA)n Simple_repeat Simple_repeat 1 89 0 256 340 0 0 chr11 6926166 6926269 -141857203 + (TG)n Simple_repeat Simple_repeat 1 103 0 1045 225 113 24 chr11 6927405 6927863 -141855609 - L1MEc LINE L1 -2624 3591 3093 1401 240 94 36 chr11 6927878 6928494 -141854978 - L1MEc LINE L1 -5122 1274 623 515 223 33 0 chr11 6928490 6928611 -141854861 - L1ME LINE L1 -368 5798 5674 * 2589 133 45 63 chr11 6928611 6929101 -141854371 + L1MD1 LINE L1 5693 6173 -69 584 170 116 27 chr11 6929101 6929213 -141854259 - FLAM_A SINE Alu -11 122 1 2589 133 45 63 chr11 6929213 6929277 -141854195 + L1MD1 LINE L1 6173 6237 -5 336 294 87 49 chr11 6929287 6929424 -141854048 + L1M4 LINE L1 5109 5256 -890 1871 166 0 13 chr11 6929424 6929725 -141853747 - AluSx SINE Alu -13 299 3 336 294 87 49 chr11 6929725 6929771 -141853701 + L1M4 LINE L1 5256 5299 -847 329 271 10 52 chr11 6929783 6929879 -141853593 + L1M LINE L1 5333 5424 -2384 295 301 77 11 chr11 6930206 6930389 -141853083 - HAL1 LINE L1 -855 1652 1458 21 0 0 0 chr11 6930440 6930461 -141853011 + AT_rich Low_complexity Low_complexity 1 21 0 5979 63 20 1 chr11 6930473 6931267 -141852205 - L1PA6 LINE L1 -2 6152 5344 4282 49 0 0 chr11 6931437 6931992 -141851480 - L1PA6 LINE L1 -887 5259 4705 463 287 16 31 chr11 6932051 6932309 -141851163 - HAL1 LINE L1 -1132 1375 1122 2164 132 0 10 chr11 6932361 6932665 -141850807 - AluSx SINE Alu -11 301 1 261 0 0 0 chr11 6932695 6932724 -141850748 + (T)n Simple_repeat Simple_repeat 1 29 0 2394 80 0 10 chr11 6933008 6933310 -141850162 - AluY SINE Alu -12 299 1 2355 149 79 11 chr11 6933426 6933883 -141849589 - L1MA8 LINE L1 -2 6289 5802 1176 141 28 0 chr11 6933883 6934060 -141849412 + AluJb SINE Alu 2 183 -129 360 311 44 22 chr11 6934408 6934543 -141848929 + MIR3 SINE MIR 34 171 -37 207 217 22 0 chr11 6934870 6934916 -141848556 + MIR SINE MIR 173 219 -43 389 276 35 28 chr11 6934957 6935102 -141848370 + L2 LINE L2 2644 2789 -525 549 329 100 42 chr11 6935390 6935770 -141847702 + L1M4 LINE L1 4233 4634 -1512 212 186 34 17 chr11 6936214 6936273 -141847199 + A-rich Low_complexity Low_complexity 3 62 0 419 301 66 46 chr11 6936719 6936915 -141846557 + MIR3 SINE MIR 7 206 -2 213 315 54 95 chr11 6937029 6937324 -141846148 - L2 LINE L2 -22 3250 2968 331 269 19 46 chr11 6938784 6938892 -141844580 + MER91A DNA MER1_type 22 126 -70 247 163 61 0 chr11 6941493 6941542 -141841930 + L3 LINE CR1 1525 1576 -1 1698 160 0 42 chr11 6943147 6943435 -141840037 + AluJb SINE Alu 1 276 -36 242 203 0 29 chr11 6943441 6943510 -141839962 + GA-rich Low_complexity Low_complexity 4 70 0 1007 244 111 32 chr11 6943709 6944053 -141839419 - L2 LINE L2 -15 3298 2928 231 310 71 35 chr11 6944479 6944592 -141838880 + L3 LINE CR1 1291 1407 -170 406 302 191 41 chr11 6945701 6946218 -141837254 + L2 LINE L2 2378 2972 -342 247 401 139 22 chr11 6946336 6946752 -141836720 - L2 LINE L2 -1 3271 2807 389 284 97 37 chr11 6946767 6946901 -141836571 + HAL1 LINE L1 2 143 -2364 540 131 85 0 chr11 6946932 6947062 -141836410 - Charlie5 DNA MER1_type -27 2585 2445 214 321 98 18 chr11 6949219 6949331 -141834141 - L3 LINE CR1 -926 651 531 275 260 0 0 chr11 6949471 6949544 -141833928 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 279 253 26 148 chr11 6949582 6949811 -141833661 - L2 LINE L2 -74 3198 2998 1405 177 56 16 chr11 6950081 6950330 -141833142 + AluJo SINE Alu 1 259 -53 442 270 163 23 chr11 6951269 6951484 -141831988 + MLT1L LTR MaLR 371 615 0 210 200 0 0 chr11 6952050 6952085 -141831387 - MIR SINE MIR -63 145 111 411 208 171 20 chr11 6952330 6952479 -141830993 - MIR SINE MIR -48 214 50 669 295 47 0 chr11 6954066 6954300 -141829172 + L1ME LINE L1 5527 5771 -350 384 259 128 35 chr11 6955072 6955239 -141828233 - MER5A DNA MER1_type 0 189 1 240 35 0 0 chr11 6955343 6955372 -141828100 + (CA)n Simple_repeat Simple_repeat 2 30 0 612 221 12 81 chr11 6957301 6957473 -141825999 - MIR3 SINE MIR -39 169 10 256 344 33 25 chr11 6958518 6958640 -141824832 + L2 LINE L2 3101 3223 -49 3077 210 80 8 chr11 6958870 6959617 -141823855 + MER63C DNA MER1_type 21 821 -109 2010 117 0 7 chr11 6959621 6959902 -141823570 - AluJb SINE Alu -3 309 31 4237 64 0 9 chr11 6959902 6960452 -141823020 + PABL_A LTR ERV1 1 545 -115 646 266 117 38 chr11 6960956 6961272 -141822200 + MER102b DNA MER1_type 1 341 0 250 279 198 18 chr11 6961336 6961447 -141822025 - L2 LINE L2 -6 3266 3136 1897 202 157 4 chr11 6962120 6962580 -141820892 + MLT1G LTR MaLR 14 543 -47 2039 124 56 31 chr11 6964088 6964377 -141819095 + MLT1A1 LTR MaLR 1 302 -63 2294 87 0 10 chr11 6964377 6964666 -141818806 - AluSq SINE Alu -9 304 19 2039 124 56 31 chr11 6964666 6964732 -141818740 + MLT1A1 LTR MaLR 302 365 0 26 30 0 0 chr11 6965490 6965523 -141817949 + AT_rich Low_complexity Low_complexity 1 33 0 2519 76 3 0 chr11 6965543 6965847 -141817625 - AluSp SINE Alu -8 305 1 592 222 9 0 chr11 6966578 6966686 -141816786 - MER68 LTR ERV1 -1 561 453 1495 224 60 58 chr11 6966688 6967189 -141816283 - MER77 LTR ERV1 0 605 104 453 268 12 47 chr11 6967395 6967528 -141815944 + LTR16A1 LTR ERVL 290 382 -75 650 233 41 82 chr11 6967528 6967747 -141815725 - MER63A DNA MER1_type 0 210 1 453 268 12 47 chr11 6967747 6967819 -141815653 + LTR16A1 LTR ERVL 382 455 -2 406 299 30 12 chr11 6968072 6968236 -141815236 + HERVL LTR ERVL 3230 3396 -2258 906 232 28 13 chr11 6968718 6968989 -141814483 - MLT1H LTR MaLR -229 320 3 279 393 19 10 chr11 6969067 6969273 -141814199 + L2 LINE L2 2151 2358 -956 342 313 20 7 chr11 6970214 6970361 -141813111 - L1ME LINE L1 -350 5771 5623 327 340 115 13 chr11 6970492 6970648 -141812824 + MIR SINE MIR 1 172 -90 1218 247 53 51 chr11 6970651 6971084 -141812388 - L2 LINE L2 -1 3312 2879 2977 215 77 23 chr11 6971100 6972714 -141810758 - L1ME1 LINE L1 -135 6031 4333 3750 169 51 63 chr11 6972726 6973143 -141810329 - L1MB4 LINE L1 0 6180 5760 2052 119 0 3 chr11 6973143 6973436 -141810036 - AluSx SINE Alu -8 304 13 3750 169 51 63 chr11 6973436 6974358 -141809114 - L1MB4 LINE L1 -420 5760 4863 1829 192 3 6 chr11 6974358 6974670 -141808802 + AluJb SINE Alu 1 311 -1 3750 169 51 63 chr11 6974670 6974724 -141808748 - L1MB4 LINE L1 -1317 4863 4810 2282 125 0 0 chr11 6975007 6975319 -141808153 - AluSx SINE Alu 0 312 1 346 196 43 22 chr11 6978087 6978179 -141805293 + MER58A DNA MER1_type 42 135 0 379 318 135 6 chr11 6979734 6979904 -141803568 + MIR3 SINE MIR 15 206 -2 1200 275 108 44 chr11 6982214 6983089 -141800383 + L2 LINE L2 2303 3299 -14 185 261 43 0 chr11 6983212 6983258 -141800214 - MIR SINE MIR -60 148 101 294 219 168 66 chr11 6983272 6983409 -141800063 + MIR SINE MIR 58 208 -54 264 297 91 29 chr11 6983929 6984104 -141799368 + L3 LINE CR1 1171 1356 -221 309 36 55 0 chr11 6990003 6990058 -141793414 + (TA)n Simple_repeat Simple_repeat 1 58 0 276 266 13 0 chr11 6990794 6990873 -141792599 - MIR3 SINE MIR -52 156 77 194 261 142 52 chr11 6991592 6991726 -141791746 + MIR3 SINE MIR 48 193 -15 211 224 0 35 chr11 6993775 6993833 -141789639 + CT-rich Low_complexity Low_complexity 4 59 0 1813 155 11 14 chr11 6993952 6994236 -141789236 + AluJo SINE Alu 14 296 -16 847 217 17 23 chr11 6994547 6994722 -141788750 - MER5A DNA MER1_type -7 182 9 566 211 8 0 chr11 6996583 6996706 -141786766 + L1MA8 LINE L1 6166 6289 -2 256 260 208 19 chr11 6996767 6996921 -141786551 - L3 LINE CR1 -102 1475 1293 490 291 150 30 chr11 6996934 6997034 -141786438 - MIR SINE MIR 0 262 175 2010 106 0 72 chr11 6997034 6997355 -141786117 - AluY SINE Alu -13 298 1 490 291 150 30 chr11 6997355 6997488 -141785984 - MIR SINE MIR -87 175 1 303 327 53 7 chr11 6997502 6997710 -141785762 - L3 LINE CR1 -344 1233 964 257 303 56 0 chr11 6998055 6998144 -141785328 - MIR3 SINE MIR -33 175 82 227 267 43 60 chr11 6998511 6998627 -141784845 + MIR SINE MIR 27 140 -68 778 154 0 0 chr11 6998755 6998872 -141784600 - FRAM SINE Alu -39 137 21 288 65 78 0 chr11 6999034 6999111 -141784361 + (TA)n Simple_repeat Simple_repeat 1 83 0 2803 20 0 0 chr11 6999209 6999514 -141783958 + AluY SINE Alu 1 305 -6 587 243 76 43 chr11 6999850 6999901 -141783571 - MIR SINE MIR -12 250 202 402 205 0 0 chr11 6999901 6999979 -141783493 - MER116 DNA Mariner -2 78 1 587 243 76 43 chr11 6999979 7000112 -141783360 - MIR SINE MIR -60 202 60 23 0 0 0 chr11 7000982 7001005 -141782467 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 94 43 chr11 7001643 7001840 -141781632 - MIR SINE MIR -29 233 30 312 185 0 0 chr11 7002075 7002129 -141781343 - L2 LINE L2 -2 3270 3217 944 237 98 109 chr11 7004117 7004665 -141778807 + MLT1H LTR MaLR 8 549 0 547 253 39 52 chr11 7004765 7004919 -141778553 - MER91A DNA MER1_type -41 155 4 189 290 177 8 chr11 7005935 7006059 -141777413 - MIR3 SINE MIR -22 186 42 484 313 33 0 chr11 7006616 7006766 -141776706 - MIR SINE MIR -87 175 21 262 233 27 48 chr11 7007586 7007732 -141775740 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 223 171 0 0 chr11 7008000 7008041 -141775431 + (TG)n Simple_repeat Simple_repeat 2 42 0 322 312 101 0 chr11 7010521 7010659 -141772813 - MIR SINE MIR -21 241 90 403 244 130 0 chr11 7011050 7011165 -141772307 - MER94 DNA DNA -2 132 3 266 348 101 18 chr11 7012032 7012259 -141771213 - MIR SINE MIR -4 258 13 182 239 87 0 chr11 7012339 7012385 -141771087 + L2 LINE L2 3223 3272 0 315 154 67 67 chr11 7015700 7015804 -141767668 - L1ME4a LINE L1 -3 6118 6015 1574 79 4 35 chr11 7015864 7016091 -141767381 - AluSg/x SINE Alu -2 308 89 469 125 45 23 chr11 7016195 7016283 -141767189 + AluJ/FRAM SINE Alu 223 312 0 306 0 0 0 chr11 7016297 7016331 -141767141 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 688 236 40 5 chr11 7016331 7016521 -141766951 + L1ME1 LINE L1 3516 3715 -2431 * 3616 209 67 14 chr11 7016520 7017159 -141766313 + L1ME1 LINE L1 4434 5038 -1296 2404 92 0 16 chr11 7017159 7017475 -141765997 + AluY SINE Alu 1 311 0 3616 209 67 14 chr11 7017475 7017936 -141765536 + L1ME1 LINE L1 5038 5473 -861 2022 119 17 30 chr11 7017936 7018238 -141765234 + AluSx SINE Alu 1 298 -14 3616 209 67 14 chr11 7018238 7018787 -141764685 + L1ME1 LINE L1 5473 6332 -2 573 292 50 12 chr11 7019137 7019298 -141764174 - MIR3 SINE MIR -22 186 20 281 291 97 48 chr11 7019493 7019658 -141763814 - MIR3 SINE MIR -10 198 26 359 372 78 37 chr11 7020852 7020938 -141762534 + L2 LINE L2 1805 1886 -1428 2640 36 7 0 chr11 7020938 7021241 -141762231 - AluY SINE Alu -6 305 1 359 372 78 37 chr11 7021241 7021692 -141761780 + L2 LINE L2 1886 2364 -950 300 300 89 48 chr11 7021979 7022272 -141761200 + L2 LINE L2 2179 2483 -831 533 262 41 35 chr11 7022298 7022470 -141761002 + MLT1K LTR MaLR 69 241 -347 229 198 48 111 chr11 7022615 7022741 -141760731 + LTR67 LTR ERVL 432 549 -8 218 309 62 0 chr11 7022851 7022932 -141760540 + L2 LINE L2 2662 2747 -567 498 286 90 108 chr11 7022956 7023283 -141760189 - L2 LINE L2 -337 2977 2646 306 73 0 0 chr11 7023283 7023324 -141760148 + (CTCA)n Simple_repeat Simple_repeat 2 42 0 498 286 90 108 chr11 7023324 7023730 -141759742 - L2 LINE L2 -668 2646 2257 2095 98 4 4 chr11 7023797 7024072 -141759400 + AluSx SINE Alu 1 275 -37 342 266 65 43 chr11 7024230 7024369 -141759103 + HAL1 LINE L1 231 372 -2135 1499 147 4 25 chr11 7024371 7024616 -141758856 + AluJo SINE Alu 1 240 -72 321 87 0 0 chr11 7024682 7024728 -141758744 + AluJo SINE Alu 247 292 -10 618 299 43 9 chr11 7024869 7025080 -141758392 - MIR SINE MIR -44 218 1 605 263 81 84 chr11 7025143 7025478 -141757994 - L2 LINE L2 -809 2505 2172 983 318 84 44 chr11 7025527 7025685 -141757787 - L2 LINE L2 -2620 694 544 1748 108 43 49 chr11 7025685 7026020 -141757452 - AluY SINE Alu 0 311 1 983 318 84 44 chr11 7026020 7026206 -141757266 - L2 LINE L2 -2770 544 367 2430 95 3 0 chr11 7026206 7026512 -141756960 + AluSc SINE Alu 1 307 -2 983 318 84 44 chr11 7026512 7026785 -141756687 - L2 LINE L2 -2947 367 51 2221 123 0 3 chr11 7027018 7027319 -141756153 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 7028079 7028273 -141755199 - MIR3 SINE MIR -30 178 1 2338 86 3 17 chr11 7028524 7028825 -141754647 - AluSc SINE Alu -12 297 1 1754 223 14 6 chr11 7029843 7030206 -141753266 + MLT2D LTR ERVL 1 366 -48 331 324 89 51 chr11 7030500 7030870 -141752602 + LTR67 LTR ERVL 36 419 -138 202 167 0 0 chr11 7030875 7030905 -141752567 + MIR SINE MIR 117 146 -116 899 309 112 11 chr11 7032192 7032568 -141750904 + LTR16C LTR ERVL 78 491 0 390 194 10 51 chr11 7032742 7032840 -141750632 + MLT1K LTR MaLR 479 572 -16 855 207 66 10 chr11 7033284 7033482 -141749990 + ORSL DNA AcHobo 1 209 -66 1334 280 74 11 chr11 7034482 7034942 -141748530 + L2 LINE L2 2824 3312 -1 238 49 0 0 chr11 7035091 7035132 -141748340 + Alu SINE Alu 262 302 0 237 206 315 22 chr11 7035150 7035242 -141748230 - L2 LINE L2 -4 3309 3191 198 250 71 0 chr11 7035546 7035602 -141747870 + L2 LINE L2 2688 2747 -567 1864 197 28 23 chr11 7036174 7036564 -141746908 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr11 7037195 7037216 -141746256 + AT_rich Low_complexity Low_complexity 1 21 0 8293 40 16 0 chr11 7037216 7038943 -141744529 - L1PA5 LINE L1 -7 6147 4405 241 292 0 0 chr11 7039139 7039211 -141744261 + MIR SINE MIR 191 262 0 2194 125 3 0 chr11 7040232 7040536 -141742936 - AluSq SINE Alu -8 305 1 4813 57 24 3 chr11 7041760 7042339 -141741133 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr11 7042848 7042870 -141740602 + (T)n Simple_repeat Simple_repeat 1 22 0 255 304 38 25 chr11 7042899 7042978 -141740494 + MIR SINE MIR 27 106 -102 1583 237 37 37 chr11 7043579 7044010 -141739462 + MLT1J1 LTR MaLR 16 446 0 22241 32 2 0 chr11 7044022 7046665 -141736807 + L1P LINE L1 1770 4418 -1728 22 0 0 0 chr11 7047067 7047089 -141736383 + AT_rich Low_complexity Low_complexity 1 22 0 6314 125 8 11 chr11 7047485 7048851 -141734621 - L1PA15 LINE L1 -4 6161 4795 3378 210 82 19 chr11 7049246 7050126 -141733346 - L1ME1 LINE L1 -17 6149 5183 1982 146 0 3 chr11 7050126 7050427 -141733045 - AluJb SINE Alu -12 300 1 3378 210 82 19 chr11 7050427 7050651 -141732821 - L1ME1 LINE L1 -983 5183 4975 301 262 37 19 chr11 7050756 7050863 -141732609 - HAL1b LINE L1 -49 1299 1191 699 83 4 78 chr11 7050967 7051234 -141732238 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 7051299 7051320 -141732152 + AT_rich Low_complexity Low_complexity 1 21 0 373 283 117 33 chr11 7052101 7052605 -141730867 - L1ME1 LINE L1 -1227 4919 4368 405 293 40 30 chr11 7052710 7052908 -141730564 - L1ME1 LINE L1 -1924 4222 4023 313 344 83 6 chr11 7052931 7053088 -141730384 - L1ME1 LINE L1 -2275 3871 3703 931 133 7 0 chr11 7053091 7053226 -141730246 + AluJb SINE Alu 6 141 -171 43 20 0 0 chr11 7053248 7053298 -141730174 + AT_rich Low_complexity Low_complexity 1 50 0 232 222 0 28 chr11 7053342 7053414 -141730058 + (TA)n Simple_repeat Simple_repeat 2 71 0 1741 99 4 0 chr11 7053503 7053736 -141729736 - L1PA11 LINE L1 -2 6172 5939 26 0 0 0 chr11 7054021 7054047 -141729425 + AT_rich Low_complexity Low_complexity 1 26 0 489 195 0 0 chr11 7054113 7054195 -141729277 + Tigger4(Zombi) DNA MER2_type 1 82 -2649 3728 94 16 0 chr11 7054200 7054709 -141728763 + Tigger4(Zombi) DNA MER2_type 2212 2728 -3 28 0 0 0 chr11 7054777 7054805 -141728667 + AT_rich Low_complexity Low_complexity 1 28 0 684 228 115 48 chr11 7054927 7055264 -141728208 + MLT1I LTR MaLR 50 435 -11 242 250 17 0 chr11 7055282 7055342 -141728130 - L1ME1 LINE L1 -3129 3017 2957 300 204 0 112 chr11 7055374 7055472 -141728000 - L1MC4 LINE L1 -1339 6703 6617 * 301 202 0 101 chr11 7055384 7055483 -141727989 + L1MC4 LINE L1 6614 6702 -1340 218 182 39 13 chr11 7055490 7055567 -141727905 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 159 47 29 chr11 7055591 7055761 -141727711 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 455 33 16 0 chr11 7055945 7056006 -141727466 + (TG)n Simple_repeat Simple_repeat 2 63 0 305 219 47 0 chr11 7057045 7057109 -141726363 + MIR3 SINE MIR 112 178 -30 268 241 23 69 chr11 7057163 7057225 -141726247 + MIR3 SINE MIR 111 169 -39 2429 135 25 3 chr11 7057225 7057581 -141725891 + THE1B LTR MaLR 1 364 0 268 241 23 69 chr11 7057581 7057605 -141725867 + MIR3 SINE MIR 169 193 -15 216 182 0 0 chr11 7057655 7057699 -141725773 + (CA)n Simple_repeat Simple_repeat 2 45 0 320 345 16 51 chr11 7058235 7058490 -141724982 + L1ME4a LINE L1 3733 3978 -2168 469 285 92 88 chr11 7058520 7058770 -141724702 + L1ME4a LINE L1 4114 4362 -1784 2430 71 0 19 chr11 7058770 7059079 -141724393 + AluY SINE Alu 1 303 -8 469 285 92 88 chr11 7059079 7059745 -141723727 + L1ME4a LINE L1 4362 5033 -1113 877 280 106 16 chr11 7059899 7060285 -141723187 + L1ME4a LINE L1 5495 5915 -206 2813 229 52 22 chr11 7060958 7061723 -141721749 + L1ME3A LINE L1 5383 6170 0 452 229 34 8 chr11 7061721 7061839 -141721633 + L1ME4a LINE L1 5977 6097 -24 * 22 35 0 0 chr11 7061865 7061894 -141721578 + AT_rich Low_complexity Low_complexity 1 29 0 366 85 0 0 chr11 7061939 7061998 -141721474 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 527 276 30 0 chr11 7062107 7062241 -141721231 - MER5A DNA MER1_type 0 189 52 350 315 117 19 chr11 7062457 7062670 -141720802 + MIR SINE MIR 3 236 -26 1594 201 0 28 chr11 7062855 7063174 -141720298 + AluJo SINE Alu 1 310 -2 201 74 0 0 chr11 7063228 7063255 -141720217 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 796 247 38 0 chr11 7063278 7063464 -141720008 + MIR SINE MIR 70 262 0 450 218 53 53 chr11 7063462 7063595 -141719877 - L2 LINE L2 -2 3311 3179 * 592 337 128 36 chr11 7064062 7064524 -141718948 - L2 LINE L2 0 3272 2854 1496 129 44 22 chr11 7064524 7064749 -141718723 - MER30 DNA MER1_type 0 230 1 592 337 128 36 chr11 7064749 7065193 -141718279 - L2 LINE L2 -418 2854 2286 2017 262 100 20 chr11 7065204 7065831 -141717641 + L1MEc LINE L1 22 726 -5670 1384 127 103 0 chr11 7065831 7066044 -141717428 - MER46A DNA MER2_type -1 235 1 2017 262 100 20 chr11 7066044 7066205 -141717267 + L1MEc LINE L1 726 873 -5523 3056 224 49 60 chr11 7066221 7067031 -141716441 + MER21B LTR ERV1 12 812 -51 1012 276 116 10 chr11 7067051 7067570 -141715902 + L1MEc LINE L1 894 1467 -4929 5450 171 58 13 chr11 7067613 7069582 -141713890 + L1MB8 LINE L1 4109 6165 -13 384 271 146 7 chr11 7070548 7070699 -141712773 + MIR3 SINE MIR 18 189 -19 227 329 163 45 chr11 7073279 7073525 -141709947 - L3 LINE CR1 -9 1568 1294 190 313 94 10 chr11 7073544 7073640 -141709832 - MIR SINE MIR -51 211 108 189 0 0 0 chr11 7073849 7073870 -141709602 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 445 241 135 0 chr11 7076370 7076503 -141706969 - MER96B DNA MER1_type? -2 415 265 744 215 41 6 chr11 7076559 7076731 -141706741 - MER96B DNA MER1_type? -239 178 1 231 232 36 0 chr11 7077008 7077064 -141706408 + G-rich Low_complexity Low_complexity 5 62 0 197 318 11 57 chr11 7079364 7079452 -141704020 - L3 LINE CR1 -257 1320 1237 * 207 338 48 48 chr11 7079428 7079573 -141703899 - L2 LINE L2 -6 3266 3122 1385 189 18 49 chr11 7079701 7079986 -141703486 + AluJo SINE Alu 3 278 -34 195 69 0 0 chr11 7079990 7080019 -141703453 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4745 167 48 57 chr11 7080068 7080978 -141702494 - L1MB8 LINE L1 0 6178 5261 1818 176 0 19 chr11 7080978 7081290 -141702182 - AluJo SINE Alu -5 307 2 4745 167 48 57 chr11 7081290 7082683 -141700789 - L1MB8 LINE L1 -917 5261 3804 447 19 0 0 chr11 7082714 7082766 -141700706 + (TG)n Simple_repeat Simple_repeat 2 53 0 2312 122 0 0 chr11 7082839 7083151 -141700321 + AluSx SINE Alu 1 312 0 411 306 95 12 chr11 7083183 7083425 -141700047 - L2 LINE L2 -459 2855 2594 354 287 70 60 chr11 7083457 7083757 -141699715 - MLT1K LTR MaLR -6 582 280 433 149 0 0 chr11 7083974 7084041 -141699431 - AluJ/FLAM SINE Alu -223 89 23 3424 57 94 0 chr11 7084444 7084869 -141698603 + MER4C LTR ERV1 1 465 0 371 327 148 30 chr11 7084892 7085391 -141698081 - L3 LINE CR1 -320 1257 700 1276 182 36 61 chr11 7085391 7085720 -141697752 - L1MC5 LINE L1 -30 7931 7611 1895 126 0 11 chr11 7085815 7086078 -141697394 - AluSq SINE Alu -53 260 1 1164 246 98 37 chr11 7086236 7086756 -141696716 + L2 LINE L2 2632 3213 -100 2410 88 3 0 chr11 7086756 7087063 -141696409 + AluSg SINE Alu 1 308 -2 1164 246 98 37 chr11 7087063 7087170 -141696302 + L2 LINE L2 3213 3312 -1 319 243 81 0 chr11 7087264 7087375 -141696097 + L1ME4a LINE L1 5764 5883 -238 1692 41 15 0 chr11 7087412 7087608 -141695864 + L1PA5 LINE L1 5956 6154 0 339 248 128 8 chr11 7087617 7087734 -141695738 + L1ME4a LINE L1 5990 6120 -1 2118 122 26 0 chr11 7088479 7088783 -141694689 + AluSx SINE Alu 1 312 0 338 183 0 12 chr11 7089309 7089391 -141694081 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3530 174 17 2 chr11 7089949 7090548 -141692924 - MER90 LTR ERV1 -6 608 1 388 292 124 52 chr11 7091006 7091239 -141692233 - MIR SINE MIR -6 256 7 228 284 0 54 chr11 7091276 7091350 -141692122 - L2 LINE L2 -559 2755 2686 2361 94 7 0 chr11 7091920 7092219 -141691253 - AluSx SINE Alu -11 301 1 1667 168 11 11 chr11 7092272 7092552 -141690920 - AluJo SINE Alu -7 305 26 492 308 0 0 chr11 7092800 7092946 -141690526 + L1ME3A LINE L1 5713 5858 -312 520 123 0 105 chr11 7093015 7093129 -141690343 - L1MB3 LINE L1 -18 6165 6064 248 318 182 20 chr11 7093628 7094024 -141689448 - L2 LINE L2 -862 2452 1993 290 311 38 57 chr11 7094175 7094281 -141689191 + L2 LINE L2 3155 3258 -14 311 274 77 17 chr11 7094584 7094701 -141688771 + L3 LINE CR1 1358 1481 -96 4630 158 38 42 chr11 7094754 7095581 -141687891 - L1MB8 LINE L1 -6 6172 5343 2203 113 0 10 chr11 7095581 7095883 -141687589 - AluSx SINE Alu -13 299 1 4630 158 38 42 chr11 7095883 7095915 -141687557 - L1MB8 LINE L1 -835 5343 5312 2708 26 3 3 chr11 7095915 7096224 -141687248 - AluY SINE Alu -2 309 1 4630 158 38 42 chr11 7096224 7096629 -141686843 - L1MB8 LINE L1 -866 5312 4897 201 296 0 0 chr11 7096630 7096674 -141686798 + L3 LINE CR1 1531 1574 -3 4162 145 90 9 chr11 7097221 7097885 -141685587 - MER72 LTR ERV1 0 722 5 1498 155 7 58 chr11 7098304 7098614 -141684858 - AluY SINE Alu -1 310 17 1152 242 37 0 chr11 7148624 7148897 -141634575 - L1ME LINE L1 -362 5808 5526 * 5111 138 9 1 chr11 7148896 7149692 -141633780 + L1PA16 LINE L1 5364 6165 -1 261 180 0 0 chr11 7149691 7149741 -141633731 - L1ME LINE L1 -625 5539 5487 * 1241 238 53 3 chr11 7149866 7150169 -141633303 - L1ME2 LINE L1 -268 6691 6374 835 191 0 7 chr11 7150181 7150328 -141633144 + FRAM SINE Alu 6 151 -25 271 191 0 0 chr11 7150341 7150388 -141633084 - L1ME2 LINE L1 -595 6364 6318 1627 214 28 87 chr11 7150427 7150993 -141632479 + MER34 LTR ERV1 10 542 0 1498 134 46 21 chr11 7151773 7152056 -141631416 - MER4-int LTR ERV1 -1455 5143 4854 * 8300 112 53 42 chr11 7152048 7152606 -141630866 + LTR8A-int LTR ERV1 5120 5670 -928 3877 164 51 19 chr11 7152606 7153308 -141630164 + LTR8A LTR ERV1 1 725 -2 8300 112 53 42 chr11 7153308 7154210 -141629262 + LTR8A-int LTR ERV1 5670 6596 -2 3776 114 23 46 chr11 7154218 7154832 -141628640 + MER4A LTR ERV1 1 600 0 440 342 55 29 chr11 7155927 7156415 -141627057 + L2 LINE L2 1334 1834 -1480 697 245 185 79 chr11 7156427 7157071 -141626401 - HAL1 LINE L1 0 2507 1780 2196 145 0 0 chr11 7157071 7157382 -141626090 - AluSx SINE Alu -1 311 1 697 245 185 79 chr11 7157382 7157446 -141626026 - HAL1 LINE L1 -727 1780 1724 2035 142 0 0 chr11 7159068 7159371 -141624101 + AluSx SINE Alu 1 303 -9 221 215 0 13 chr11 7159436 7159515 -141623957 + GA-rich Low_complexity Low_complexity 1 78 0 2640 42 0 3 chr11 7160754 7161061 -141622411 + AluY SINE Alu 1 306 -5 2536 174 22 0 chr11 7161071 7161484 -141621988 - MSTB LTR MaLR -4 422 1 243 291 0 23 chr11 7161729 7161815 -141621657 + (CA)n Simple_repeat Simple_repeat 1 84 0 6078 168 40 27 chr11 7163627 7164479 -141618993 + L1MC2 LINE L1 4407 5247 -1097 2011 92 0 0 chr11 7164479 7164730 -141618742 + AluSc SINE Alu 40 290 -19 6078 168 40 27 chr11 7164730 7165693 -141617779 + L1MC2 LINE L1 5247 6261 -83 1252 147 20 33 chr11 7165693 7165938 -141617534 - L1MA10 LINE L1 -7 6327 6086 6078 168 40 27 chr11 7165938 7166002 -141617470 + L1MC2 LINE L1 6261 6323 -21 315 80 0 0 chr11 7165993 7166043 -141617429 + L1MC3 LINE L1 7575 7624 -161 * 1752 266 103 22 chr11 7166075 7167108 -141616364 - L1ME2 LINE L1 -877 6064 4949 2309 93 0 3 chr11 7167170 7167461 -141616011 - AluSq SINE Alu -21 292 3 511 263 158 7 chr11 7168178 7168330 -141615142 + MER5A DNA MER1_type 9 183 -6 2606 59 0 0 chr11 7168362 7168667 -141614805 - AluY SINE Alu -6 305 1 443 333 31 26 chr11 7168704 7168896 -141614576 - L1ME2 LINE L1 -5408 1015 823 41 72 0 0 chr11 7169044 7169127 -141614345 + AT_rich Low_complexity Low_complexity 1 83 0 417 117 130 0 chr11 7169127 7169204 -141614268 - L1MB2 LINE L1 -7 6164 6078 3147 198 40 60 chr11 7169211 7169270 -141614202 - L1MC4a LINE L1 0 7808 7749 761 227 0 0 chr11 7169270 7169402 -141614070 + FLAM_A SINE Alu 2 133 0 3147 198 40 60 chr11 7169402 7170146 -141613326 - L1MC4a LINE L1 -59 7749 7021 867 252 31 24 chr11 7170152 7170406 -141613066 - L1ME3A LINE L1 -5 6165 5910 260 277 264 34 chr11 7170635 7170783 -141612689 - L1ME3A LINE L1 -2073 5735 5554 184 333 46 11 chr11 7171918 7172005 -141611467 - MIR3 SINE MIR -5 203 114 542 264 149 27 chr11 7172187 7172532 -141610940 - LTR16A LTR ERVL -4 446 21 264 75 0 0 chr11 7172933 7172973 -141610499 - L1MA9 LINE L1 -3 6309 6270 300 269 239 13 chr11 7172974 7173208 -141610264 + L2 LINE L2 2275 2561 -753 26 0 0 0 chr11 7173770 7173796 -141609676 + AT_rich Low_complexity Low_complexity 1 26 0 10047 167 15 98 chr11 7173802 7176984 -141606488 + L1M2a LINE L1 6 2930 -4238 277 326 30 52 chr11 7178015 7178248 -141605224 + MLT1K LTR MaLR 316 543 -45 261 243 68 14 chr11 7179220 7179294 -141604178 - MIR SINE MIR -78 130 53 197 273 189 35 chr11 7180553 7180696 -141602776 - MIR3 SINE MIR -18 190 26 413 209 51 10 chr11 7180696 7180851 -141602621 - LTR36 LTR ERV1 -1 610 395 256 287 34 72 chr11 7182216 7182333 -141601139 - L1MC/D LINE L1 -1972 5836 5716 2350 90 10 0 chr11 7182333 7182633 -141600839 - AluSp SINE Alu -10 303 1 256 287 34 72 chr11 7182633 7182808 -141600664 - L1MC/D LINE L1 -2092 5716 5555 665 155 14 27 chr11 7183159 7183307 -141600165 + MER4C LTR ERV1 1 146 -319 327 290 25 49 chr11 7183727 7183889 -141599583 - HERVL LTR ERVL -1460 4194 4037 742 321 36 24 chr11 7184261 7184597 -141598875 - HERVL LTR ERVL -4335 661 322 1969 178 23 25 chr11 7184631 7185024 -141598448 - MSTB1 LTR MaLR 0 432 41 6606 68 0 0 chr11 7185024 7186054 -141597418 - L1PA5 LINE L1 -1 6153 5101 10090 81 9 1 chr11 7186054 7187492 -141595980 + L1PA5 LINE L1 3651 5100 -1046 30 0 0 0 chr11 7187701 7187731 -141595741 + AT_rich Low_complexity Low_complexity 1 30 0 325 306 47 80 chr11 7187849 7188124 -141595348 - L1M4 LINE L1 -3366 2780 2515 254 259 63 28 chr11 7188200 7188343 -141595129 - L1ME3A LINE L1 0 6170 6023 364 264 47 39 chr11 7190538 7190667 -141592805 - L2 LINE L2 0 3313 3184 291 114 0 0 chr11 7190670 7190714 -141592758 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 173 53 0 chr11 7190727 7190802 -141592670 + (TA)n Simple_repeat Simple_repeat 2 80 0 363 167 0 0 chr11 7190884 7190950 -141592522 + (TA)n Simple_repeat Simple_repeat 1 66 0 477 331 94 20 chr11 7193081 7193380 -141590092 - L1ME3A LINE L1 -253 5868 5548 2525 178 9 38 chr11 7194277 7194829 -141588643 - LTR27 LTR ERV1 -98 538 3 441 289 41 84 chr11 7195661 7196077 -141587395 + MLT1J LTR MaLR 109 506 -5 24 0 0 0 chr11 7196087 7196111 -141587361 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 7196235 7196259 -141587213 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 7196324 7196347 -141587125 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 7196949 7196972 -141586500 + AT_rich Low_complexity Low_complexity 1 23 0 22952 35 0 0 chr11 7196974 7200551 -141582921 + L1PA2 LINE L1 2572 6154 -1 334 267 9 0 chr11 7200616 7200721 -141582751 - L1ME LINE L1 -461 5660 5555 32 91 0 0 chr11 7200846 7200934 -141582538 + AT_rich Low_complexity Low_complexity 1 88 0 1789 155 3 32 chr11 7201377 7201687 -141581785 + AluJb SINE Alu 1 301 -11 4747 142 55 16 chr11 7201715 7202582 -141580890 - MER4D LTR ERV1 0 903 3 606 215 35 14 chr11 7202712 7202856 -141580616 + MER93b LTR ERV1 1 147 -226 3270 59 25 7 chr11 7202908 7203348 -141580124 + LTR7 LTR ERV1 1 448 -2 18732 99 69 14 chr11 7203350 7206468 -141577004 + HERVH LTR ERV1 1 3290 -4423 3084 124 8 6 chr11 7206458 7206959 -141576513 + HERVH LTR ERV1 3492 3993 -3720 * 4121 139 1 3 chr11 7206961 7207624 -141575848 + HERVH LTR ERV1 4488 5149 -2564 1325 124 18 9 chr11 7207625 7207843 -141575629 + HERVH LTR ERV1 5600 5819 -1894 2393 75 48 3 chr11 7207843 7208216 -141575256 + HERVH LTR ERV1 7324 7713 0 3480 58 0 7 chr11 7208216 7208667 -141574805 + LTR7 LTR ERV1 1 448 -2 453 215 15 15 chr11 7208667 7208797 -141574675 + MER93b LTR ERV1 244 373 0 770 198 80 0 chr11 7209334 7209496 -141573976 - MER5A DNA MER1_type -2 187 13 312 192 0 90 chr11 7209539 7209617 -141573855 + MIR SINE MIR 183 253 -9 486 136 62 0 chr11 7210056 7210137 -141573335 + LTR54B LTR ERV1 1 86 -412 3145 121 0 0 chr11 7210137 7210615 -141572857 + MER41B LTR ERV1 1 478 -157 1264 188 88 40 chr11 7210612 7211181 -141572291 - LTR48B LTR ERV1 -21 614 1 * 324 192 0 0 chr11 7211181 7211252 -141572220 + MER57A LTR ERV1 331 401 -2 2141 129 7 0 chr11 7211334 7211644 -141571828 + AluSq SINE Alu 1 312 -1 2401 130 35 21 chr11 7212129 7212560 -141570912 - LTR23 LTR ERV1 0 437 1 5328 164 31 22 chr11 7212657 7214043 -141569429 - LTR23-int LTR ERV1 -101 5699 4415 2887 43 13 5 chr11 7214210 7214586 -141568886 + LTR10C LTR ERV1 1 379 -212 2133 143 35 20 chr11 7214589 7214995 -141568477 + LTR3 LTR ERVK 5 416 -16 23955 132 20 13 chr11 7215057 7219311 -141564161 + HERVK3 LTR ERVK 2 4226 -1719 1506 130 41 0 chr11 7219311 7219557 -141563915 + L1PA15 LINE L1 5910 6165 0 23955 132 20 13 chr11 7219557 7219579 -141563893 + HERVK3 LTR ERVK 4226 4246 -1699 216 0 0 0 chr11 7219579 7219603 -141563869 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23955 132 20 13 chr11 7219603 7220292 -141563180 + HERVK3 LTR ERVK 4246 5238 -707 2311 84 0 3 chr11 7220292 7220588 -141562884 - AluY SINE Alu -16 295 1 23955 132 20 13 chr11 7220588 7220957 -141562515 + HERVK3 LTR ERVK 5238 5603 -342 653 106 0 0 chr11 7220953 7221047 -141562425 + HERVK3 LTR ERVK 7150 7243 0 * 2137 165 14 17 chr11 7221051 7221464 -141562008 + LTR3 LTR ERVK 5 416 -16 1688 65 9 0 chr11 7221486 7221703 -141561769 + LTR10C LTR ERV1 373 591 0 1189 175 37 20 chr11 7221742 7221988 -141561484 + MLT1B LTR MaLR 3 252 -138 521 195 65 0 chr11 7221983 7222106 -141561366 + LTR23 LTR ERV1 11 141 -296 * 2500 72 0 3 chr11 7222200 7222505 -141560967 - AluY SINE Alu -7 304 1 668 209 36 0 chr11 7223147 7223343 -141560129 - L1ME3A LINE L1 -219 5951 5749 799 114 15 0 chr11 7223438 7223569 -141559903 + LTR23 LTR ERV1 167 299 -138 749 189 0 0 chr11 7223577 7223704 -141559768 + FLAM_C SINE Alu 2 128 -5 614 196 0 29 chr11 7223721 7223859 -141559613 + LTR23 LTR ERV1 293 426 -11 632 193 21 21 chr11 7223965 7224105 -141559367 + LTR23 LTR ERV1 298 437 0 793 161 35 0 chr11 7224105 7224248 -141559224 + MLT1B LTR MaLR 240 387 -3 1845 171 34 0 chr11 7224410 7224703 -141558769 - AluJo SINE Alu -9 303 1 1019 189 137 107 chr11 7224962 7225458 -141558014 + MER67D LTR ERV1 1 511 -3 681 224 63 40 chr11 7225510 7225733 -141557739 + MER110A LTR ERV1 17 244 -224 261 318 56 19 chr11 7226060 7226167 -141557305 - MLT-int LTR MaLR -1219 516 406 345 47 0 0 chr11 7226503 7226546 -141556926 + (TG)n Simple_repeat Simple_repeat 2 44 0 476 280 109 71 chr11 7226628 7227237 -141556235 - L2 LINE L2 -5 3308 2653 861 125 0 0 chr11 7227762 7227882 -141555590 + FLAM_C SINE Alu 6 125 -18 439 282 213 23 chr11 7227882 7228098 -141555374 - MIR SINE MIR -5 257 1 1911 194 94 2 chr11 7228924 7229393 -141554079 + Charlie1b DNA MER1_type 6 517 -6 504 276 115 21 chr11 7230604 7230820 -141552652 - MIR SINE MIR -4 258 30 320 351 98 65 chr11 7230863 7231056 -141552416 - L2 LINE L2 -5 3267 3057 470 46 15 0 chr11 7231056 7231121 -141552351 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 320 351 98 65 chr11 7231121 7231252 -141552220 - L2 LINE L2 -215 3057 2932 460 86 57 0 chr11 7231353 7231423 -141552049 + U6 snRNA snRNA 1 74 -33 354 356 86 29 chr11 7231682 7231960 -141551512 - L2 LINE L2 -565 2749 2456 24 100 0 0 chr11 7232083 7232163 -141551309 + AT_rich Low_complexity Low_complexity 1 80 0 2277 128 0 0 chr11 7232213 7232525 -141550947 + AluSx SINE Alu 1 312 0 29 70 0 0 chr11 7232697 7232754 -141550718 + AT_rich Low_complexity Low_complexity 1 57 0 2032 167 0 0 chr11 7232805 7233117 -141550355 + AluSx SINE Alu 1 312 0 1562 109 0 0 chr11 7233395 7233605 -141549867 - AluY SINE Alu 0 311 102 453 331 61 32 chr11 7233609 7234137 -141549335 - HAL1 LINE L1 -823 1684 1142 1755 154 37 20 chr11 7234387 7234686 -141548786 - AluJb SINE Alu -5 307 4 22 0 0 0 chr11 7234852 7234874 -141548598 + AT_rich Low_complexity Low_complexity 1 22 0 518 318 92 32 chr11 7235611 7236196 -141547276 - L1M4 LINE L1 -2846 3300 2681 180 158 0 0 chr11 7236219 7236257 -141547215 + (CA)n Simple_repeat Simple_repeat 1 38 0 3876 138 150 118 chr11 7236539 7237771 -141545701 + MER52C LTR ERV1 8 1278 0 750 274 82 50 chr11 7238288 7238704 -141544768 - LTR33 LTR ERVL -4 517 89 218 105 26 0 chr11 7238704 7238742 -141544730 + (TG)n Simple_repeat Simple_repeat 1 39 0 1594 168 14 25 chr11 7239117 7239431 -141544041 - AluJo SINE Alu 0 311 1 549 293 134 41 chr11 7239842 7240485 -141542987 - L1ME4a LINE L1 -46 6075 5376 182 89 54 18 chr11 7240528 7240584 -141542888 + (TA)n Simple_repeat Simple_repeat 2 59 0 308 301 78 39 chr11 7240842 7241048 -141542424 - L1ME4a LINE L1 -1164 4982 4769 2729 125 14 14 chr11 7241877 7242301 -141541171 + MSTA LTR MaLR 4 427 -1 249 102 82 0 chr11 7243153 7243202 -141540270 + L1MB8 LINE L1 5890 5942 -236 * 1865 165 31 21 chr11 7243199 7243618 -141539854 - L1MB7 LINE L1 -203 6792 6370 * 2581 213 48 4 chr11 7243608 7244340 -141539132 - L1MB7 LINE L1 -3152 3805 3042 705 152 10 76 chr11 7244380 7244578 -141538894 + L1MB7 LINE L1 5267 5451 -733 1078 167 19 0 chr11 7244607 7244823 -141538649 + L1MB7 LINE L1 5648 5867 -317 503 256 5 46 chr11 7244840 7245059 -141538413 - L1MB7 LINE L1 -3897 3062 2853 1754 249 54 33 chr11 7245059 7245574 -141537898 - L1MB7 LINE L1 -6333 526 1 * 1982 173 32 42 chr11 7245559 7246108 -141537364 - L1M4 LINE L1 -733 5451 4902 1379 285 106 29 chr11 7246354 7247427 -141536045 - HAL1 LINE L1 -1 2506 1351 238 197 98 0 chr11 7247740 7247801 -141535671 + L1ME LINE L1 5581 5647 -474 250 169 31 0 chr11 7248283 7248348 -141535124 + (TA)n Simple_repeat Simple_repeat 2 68 0 305 317 48 27 chr11 7248938 7249124 -141534348 - L1 LINE L1 -2334 3812 3623 2573 70 0 3 chr11 7250245 7250557 -141532915 + AluY SINE Alu 1 311 0 426 337 75 33 chr11 7250707 7251039 -141532433 + HAL1 LINE L1 1108 1453 -1054 2049 151 0 0 chr11 7252111 7252410 -141531062 - AluSx SINE Alu -13 299 1 755 157 8 0 chr11 7252616 7252737 -141530735 + AluJ SINE Alu 1 122 -180 1474 74 0 16 chr11 7252875 7253064 -141530408 - AluY SINE Alu -125 186 1 990 163 52 0 chr11 7253074 7253227 -141530245 + AluJ SINE Alu 130 290 -22 2251 89 10 3 chr11 7253571 7253874 -141529598 + AluSc SINE Alu 1 305 -4 386 358 72 21 chr11 7253883 7254162 -141529310 + L2 LINE L2 2564 2856 -458 40613 35 21 2 chr11 7254176 7260212 -141523260 - L1PA2 LINE L1 0 6155 1 199 258 0 45 chr11 7260261 7260327 -141523145 + L2 LINE L2 2911 2973 -340 21 57 0 0 chr11 7260713 7260748 -141522724 + AT_rich Low_complexity Low_complexity 1 35 0 2732 46 6 6 chr11 7260924 7261272 -141522200 - L1PA8 LINE L1 -7 6165 5818 2315 54 6 9 chr11 7261272 7261587 -141521885 + L1P3 LINE L1 5402 5715 -457 260 157 100 14 chr11 7262495 7262565 -141520907 - L1MA9 LINE L1 -22 6290 6215 436 333 59 34 chr11 7262664 7262868 -141520604 + MIR SINE MIR 44 252 -10 272 274 147 10 chr11 7263171 7263273 -141520199 - MIR3 SINE MIR -90 118 3 211 237 68 0 chr11 7263358 7263417 -141520055 - L2 LINE L2 0 3272 3210 518 305 147 13 chr11 7263896 7264371 -141519101 - L1ME4a LINE L1 -253 5868 5330 25 65 0 0 chr11 7264441 7264487 -141518985 + AT_rich Low_complexity Low_complexity 1 46 0 228 163 0 0 chr11 7265119 7265162 -141518310 + GA-rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr11 7265262 7265286 -141518186 + (GA)n Simple_repeat Simple_repeat 1 24 0 257 301 96 0 chr11 7266329 7266412 -141517060 - MIR SINE MIR -88 174 84 33 25 0 0 chr11 7267633 7267673 -141515799 + AT_rich Low_complexity Low_complexity 1 40 0 335 280 51 34 chr11 7269632 7269750 -141513722 - L2 LINE L2 -4 3268 3149 2299 95 13 0 chr11 7270293 7270599 -141512873 + AluSg SINE Alu 1 310 0 413 391 66 0 chr11 7273124 7273321 -141510151 - L2 LINE L2 -2 3270 3061 1788 58 4 0 chr11 7273648 7273874 -141509598 + L1PA12 LINE L1 5938 6164 -4 449 271 87 64 chr11 7273921 7274055 -141509417 - L1MC/D LINE L1 -747 5399 5269 2026 130 0 35 chr11 7274055 7274371 -141509101 + AluSc SINE Alu 1 305 -4 449 271 87 64 chr11 7274371 7274885 -141508587 - L1MC/D LINE L1 -877 5269 5120 24 0 0 0 chr11 7274925 7274949 -141508523 + AT_rich Low_complexity Low_complexity 1 24 0 2179 141 20 0 chr11 7275051 7275392 -141508080 - MER7A DNA MER2_type 0 346 1 409 305 65 45 chr11 7275621 7276237 -141507235 - L1MC/D LINE L1 -1457 4689 4062 254 293 40 30 chr11 7276264 7276363 -141507109 - L2 LINE L2 -305 2967 2868 886 269 63 12 chr11 7276375 7276758 -141506714 - MER115 DNA AcHobo 0 693 238 2753 173 26 116 chr11 7276777 7277151 -141506321 - L1PA14 LINE L1 -26 6135 5864 7079 47 27 0 chr11 7277151 7278295 -141505177 - L1PA6 LINE L1 -4 6150 4984 2753 173 26 116 chr11 7278295 7278688 -141504784 - L1PA14 LINE L1 -297 5864 5437 490 114 13 0 chr11 7278686 7278765 -141504707 + L1 LINE L1 4740 4819 -1327 * 4577 154 29 25 chr11 7278766 7280045 -141503427 + L1PA16 LINE L1 4868 6154 -12 456 245 35 14 chr11 7280120 7280263 -141503209 + L1M4 LINE L1 2382 2527 -3619 547 226 132 0 chr11 7280310 7280500 -141502972 + L1ME3A LINE L1 5736 5950 -220 786 300 45 16 chr11 7281335 7281582 -141501890 + LTR16A LTR ERVL 179 432 -18 * 1265 214 33 63 chr11 7281581 7281775 -141501697 - MLT1A2 LTR MaLR -20 354 175 363 23 0 0 chr11 7281775 7281819 -141501653 + (GA)n Simple_repeat Simple_repeat 1 44 0 1265 214 33 63 chr11 7281819 7281989 -141501483 - MLT1A2 LTR MaLR -199 175 1 1468 304 55 16 chr11 7282008 7282573 -141500899 + HERV16 LTR ERVL 38 624 -4372 1535 303 35 0 chr11 7282802 7283258 -141500214 + HERV16 LTR ERVL 927 1398 -3598 2072 269 87 56 chr11 7283287 7284220 -141499252 + HERV16 LTR ERVL 1613 2574 -2422 560 121 30 0 chr11 7284232 7284364 -141499108 + (TA)n Simple_repeat Simple_repeat 1 136 0 2273 101 0 0 chr11 7284729 7285026 -141498446 + AluSg SINE Alu 1 297 -13 279 316 44 53 chr11 7285038 7285152 -141498320 + MIR SINE MIR 17 129 -133 210 204 20 0 chr11 7285190 7285239 -141498233 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 239 34 29 chr11 7285314 7285519 -141497953 + L2 LINE L2 3108 3313 0 705 249 29 0 chr11 7285807 7285980 -141497492 + MER5B DNA MER1_type 1 178 0 344 182 0 0 chr11 7285985 7286040 -141497432 - MER5A DNA MER1_type -2 187 133 205 240 13 27 chr11 7286442 7286517 -141496955 + A-rich Low_complexity Low_complexity 2 75 0 430 310 60 8 chr11 7286731 7287036 -141496436 - L1P2 LINE L1 -319 5835 5509 360 216 74 99 chr11 7287199 7287361 -141496111 + L2 LINE L2 3156 3313 0 1869 195 82 47 chr11 7287422 7287910 -141495562 - MLT1D LTR MaLR 0 505 1 1492 232 40 96 chr11 7287910 7288410 -141495062 - MLT1D-int LTR MaLR 0 1371 900 528 283 29 0 chr11 7288553 7288691 -141494781 - MLT1D-int LTR MaLR -484 887 746 957 225 22 5 chr11 7288701 7288923 -141494549 - MLT1D-int LTR MaLR -855 516 291 674 251 9 48 chr11 7288926 7289020 -141494452 + L1M4 LINE L1 2192 2288 -3858 2219 119 0 10 chr11 7289020 7289331 -141494141 + AluSg SINE Alu 1 308 -2 674 251 9 48 chr11 7289331 7289460 -141494012 + L1M4 LINE L1 2288 2408 -3738 1562 189 3 19 chr11 7289460 7289783 -141493689 + L1MD1 LINE L1 5925 6242 0 1595 182 3 55 chr11 7290001 7290308 -141493164 - AluJo SINE Alu -20 292 2 239 338 104 24 chr11 7290587 7290829 -141492643 - MIR SINE MIR -3 259 2 203 88 29 0 chr11 7291110 7291144 -141492328 + (TG)n Simple_repeat Simple_repeat 1 35 0 204 288 0 0 chr11 7291822 7291881 -141491591 - L3 LINE CR1 -158 1419 1361 2392 304 58 27 chr11 7292983 7293906 -141489566 + L2 LINE L2 221 1172 -2142 25 31 0 0 chr11 7296317 7296349 -141487123 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr11 7296475 7296504 -141486968 + AT_rich Low_complexity Low_complexity 1 29 0 2003 119 0 10 chr11 7297299 7297593 -141485879 + AluSq SINE Alu 1 291 -22 21 0 0 0 chr11 7297593 7297614 -141485858 + AT_rich Low_complexity Low_complexity 1 21 0 2062 271 29 13 chr11 7297967 7298766 -141484706 + L1M4 LINE L1 1 1280 -5929 7261 121 9 6 chr11 7298866 7300222 -141483250 - L1P2 LINE L1 -571 5583 4226 5802 153 34 26 chr11 7300322 7301452 -141482020 - HERVH LTR ERV1 -6156 1557 420 6875 59 10 10 chr11 7302673 7303114 -141480358 + L1PA7 LINE L1 5039 5479 -675 2422 82 0 0 chr11 7303114 7303417 -141480055 + AluY SINE Alu 1 303 -8 6875 59 10 10 chr11 7303417 7304077 -141479395 + L1PA7 LINE L1 5478 6140 -14 403 240 70 63 chr11 7304211 7304419 -141479053 + L1M4 LINE L1 5099 5307 -1901 8681 143 17 9 chr11 7304509 7307097 -141476375 - L1MA2 LINE L1 0 7723 5122 6769 140 33 8 chr11 7307098 7308561 -141474911 - L1MA2 LINE L1 -3594 3971 2469 9771 55 9 2 chr11 7308620 7310643 -141472829 - L1PA6 LINE L1 0 6154 4117 20723 37 0 0 chr11 7310643 7313182 -141470290 + L1PA6 LINE L1 1575 4114 -2032 471 63 0 0 chr11 7313188 7313251 -141470221 - L1P4 LINE L1 -349 5819 5757 4856 116 69 42 chr11 7313253 7314389 -141469083 + MER11A LTR ERVK 1 1266 0 5599 173 50 10 chr11 7314390 7316208 -141467264 - L1P4 LINE L1 -406 5759 3868 2539 84 21 32 chr11 7316263 7316642 -141466830 + THE1C LTR MaLR 1 375 0 372 280 0 10 chr11 7316868 7316968 -141466504 + MER72 LTR ERV1 278 376 -346 8849 206 85 2 chr11 7316977 7318938 -141464534 - L1M2 LINE L1 -4722 2127 4 335 269 130 22 chr11 7319274 7319698 -141463774 + L1ME LINE L1 1332 1820 -5127 271 229 0 12 chr11 7319711 7319794 -141463678 - L1M LINE L1 -822 5344 5263 640 256 58 0 chr11 7319798 7319970 -141463502 - MER58A DNA MER1_type 0 224 43 338 216 144 0 chr11 7320001 7320112 -141463360 - L1M4 LINE L1 -880 5266 5140 727 218 74 10 chr11 7320112 7320389 -141463083 - MLT1A2 LTR MaLR 0 390 2 922 271 44 5 chr11 7320411 7320847 -141462625 - L1M4 LINE L1 -1021 5125 4673 255 125 0 0 chr11 7321027 7321067 -141462405 + (TA)n Simple_repeat Simple_repeat 1 40 0 2112 142 0 3 chr11 7321067 7321369 -141462103 - AluSx SINE Alu -11 301 1 6722 171 33 5 chr11 7321379 7321808 -141461664 - L1PA14 LINE L1 -4 6157 5742 2355 111 16 32 chr11 7321808 7322178 -141461294 - THE1B LTR MaLR 0 364 1 6722 171 33 5 chr11 7322178 7322265 -141461207 - L1PA14 LINE L1 -419 5742 5659 2334 145 6 11 chr11 7322265 7322631 -141460841 - THE1B LTR MaLR 0 364 1 6722 171 33 5 chr11 7322631 7324254 -141459218 - L1PA14 LINE L1 -502 5659 3988 880 219 0 9 chr11 7324256 7324466 -141459006 - L1PA14 LINE L1 -2675 3471 3264 2179 105 10 0 chr11 7324889 7325185 -141458287 - AluSg SINE Alu -11 299 1 1929 138 4 4 chr11 7325523 7325799 -141457673 - AluSx SINE Alu -36 276 1 1726 192 39 0 chr11 7325807 7326088 -141457384 - AluJb SINE Alu -20 292 1 563 250 87 23 chr11 7326731 7326903 -141456569 + MIR SINE MIR 6 188 -74 22 70 0 0 chr11 7326916 7326959 -141456513 + AT_rich Low_complexity Low_complexity 1 43 0 269 306 34 41 chr11 7328939 7329086 -141454386 - MIR SINE MIR -17 245 100 660 307 21 56 chr11 7329366 7329744 -141453728 + L1MDa LINE L1 38 402 -6138 4287 156 32 32 chr11 7329769 7330552 -141452920 - LTR39 LTR ERV1 0 783 1 2294 215 70 25 chr11 7331043 7331839 -141451633 + L1MDa LINE L1 1017 1848 -4692 2151 203 30 59 chr11 7331857 7332004 -141451468 - L1MA9 LINE L1 -34 6278 6128 2073 125 6 6 chr11 7332004 7332339 -141451133 + L1MA3 LINE L1 5971 6305 0 2151 203 30 59 chr11 7332339 7332808 -141450664 - L1MA9 LINE L1 -184 6128 5647 186 71 0 0 chr11 7332808 7332836 -141450636 + (CA)n Simple_repeat Simple_repeat 2 29 0 2151 203 30 59 chr11 7332836 7333163 -141450309 - L1MA9 LINE L1 -665 5647 5312 16118 49 0 1 chr11 7333163 7335942 -141447530 - L1PA5 LINE L1 0 6154 3375 2151 203 30 59 chr11 7335942 7336547 -141446925 - L1MA9 LINE L1 -1000 5312 4794 438 114 34 0 chr11 7336571 7336659 -141446813 - L1MB2 LINE L1 -3 6168 6078 1177 126 16 16 chr11 7336659 7336833 -141446639 + AluSp SINE Alu 136 312 -1 3075 147 16 96 chr11 7336833 7337574 -141445898 - L1MB3 LINE L1 -86 6097 5416 593 210 13 49 chr11 7337565 7337798 -141445674 - L1MA9 LINE L1 -1338 4808 4425 * 1947 159 7 7 chr11 7337798 7338099 -141445373 + AluSx SINE Alu 1 301 -11 593 210 13 49 chr11 7338099 7338167 -141445305 - L1MA9 LINE L1 -1721 4425 4356 642 222 31 43 chr11 7338171 7338420 -141445052 - L1MA4 LINE L1 -5 6295 6060 2271 123 0 0 chr11 7338420 7338730 -141444742 - AluSg SINE Alu 0 310 1 1994 138 17 3 chr11 7338733 7339023 -141444449 - AluSg SINE Alu -11 299 6 2102 202 259 18 chr11 7339051 7339896 -141443576 - L1MA9 LINE L1 -1774 4372 3324 9987 200 11 11 chr11 7340698 7343014 -141440458 - L1PA12 LINE L1 -2814 4770 2454 234 0 0 0 chr11 7343019 7343045 -141440427 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5406 203 5 5 chr11 7343048 7344133 -141439339 - L1PA12 LINE L1 -5874 1707 610 332 316 107 25 chr11 7344531 7344727 -141438745 - MIR SINE MIR -30 232 21 319 325 114 42 chr11 7344753 7344990 -141438482 + L3 LINE CR1 1006 1259 -318 21 0 0 0 chr11 7345274 7345295 -141438177 + AT_rich Low_complexity Low_complexity 1 21 0 2434 240 47 6 chr11 7346404 7347124 -141436348 - L1ME1 LINE L1 0 6166 5417 259 159 32 0 chr11 7347193 7347256 -141436216 - L1MDa LINE L1 -3988 2552 2488 37 81 0 0 chr11 7347256 7347342 -141436130 + AT_rich Low_complexity Low_complexity 1 86 0 543 139 16 16 chr11 7347372 7347501 -141435971 - L1MDa LINE L1 -3988 2552 2424 * 1375 221 56 20 chr11 7347500 7347998 -141435474 - L1ME1 LINE L1 -772 5374 4859 361 60 20 0 chr11 7347999 7348049 -141435423 - LTR57 LTR ERVL -360 51 1 4792 160 10 29 chr11 7348051 7348914 -141434558 - LTR57-int LTR ERVL -2 5341 4495 231 153 68 0 chr11 7348914 7348973 -141434499 + L1MA7 LINE L1 6229 6291 0 25 31 0 0 chr11 7349139 7349171 -141434301 + AT_rich Low_complexity Low_complexity 1 32 0 295 280 90 70 chr11 7349451 7349651 -141433821 - L2 LINE L2 -143 3129 2926 23 0 0 0 chr11 7351566 7351589 -141431883 + AT_rich Low_complexity Low_complexity 1 23 0 195 293 17 0 chr11 7351710 7351768 -141431704 - L2 LINE L2 -1 3271 3213 * 788 282 28 5 chr11 7351739 7351952 -141431520 - MIR SINE MIR -25 237 20 252 306 217 0 chr11 7351955 7352112 -141431360 - MIR SINE MIR -71 191 1 1565 68 10 14 chr11 7352428 7352635 -141430837 - AluY SINE Alu 0 311 106 7010 42 36 1 chr11 7353003 7353843 -141429629 - L1PA5 LINE L1 -5 6149 5340 200 59 29 0 chr11 7353843 7353877 -141429595 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7010 42 36 1 chr11 7353877 7354646 -141428826 - L1PA5 LINE L1 -814 5340 4510 345 24 0 0 chr11 7354647 7354689 -141428783 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7677 20 0 4 chr11 7354689 7355704 -141427768 - L1PA3 LINE L1 -13 6142 5129 31422 60 2 12 chr11 7355704 7360007 -141423465 - L1PA5 LINE L1 -1629 4517 258 505 342 58 38 chr11 7360943 7361531 -141421941 - L2 LINE L2 0 3313 2665 1305 307 50 12 chr11 7361531 7362013 -141421459 - MLT1H1 LTR MaLR -55 500 1 3321 218 32 5 chr11 7362657 7363409 -141420063 + L1MB8 LINE L1 5406 6177 -1 2331 78 14 0 chr11 7363551 7363675 -141419797 + AluY SINE Alu 1 122 -189 333 0 0 0 chr11 7363675 7363712 -141419760 + (CA)n Simple_repeat Simple_repeat 2 38 0 2331 78 14 0 chr11 7363712 7363882 -141419590 + AluY SINE Alu 122 299 -12 241 336 0 9 chr11 7364182 7364295 -141419177 - MLT1-int LTR MaLR -862 509 398 382 341 54 48 chr11 7364410 7364489 -141418983 - L2 LINE L2 -1023 2291 2214 1151 200 82 53 chr11 7364489 7364844 -141418628 + MLT1A1 LTR MaLR 1 365 0 382 341 54 48 chr11 7364844 7365095 -141418377 - L2 LINE L2 -1100 2214 1959 793 123 142 112 chr11 7365491 7365514 -141417958 - Tigger3(Golem) DNA MER2_type -357 2672 2651 1041 123 0 0 chr11 7365514 7365693 -141417779 + (TA)n Simple_repeat Simple_repeat 2 180 0 793 123 142 112 chr11 7365693 7365841 -141417631 - Tigger3(Golem) DNA MER2_type -378 2651 2488 1768 164 0 11 chr11 7365841 7366115 -141417357 - AluJb SINE Alu -39 273 3 793 123 142 112 chr11 7366115 7366210 -141417262 - Tigger3(Golem) DNA MER2_type -541 2488 2397 183 100 0 0 chr11 7366210 7366240 -141417232 + (TA)n Simple_repeat Simple_repeat 2 31 0 40 101 0 0 chr11 7366313 7366451 -141417021 + AT_rich Low_complexity Low_complexity 1 138 0 999 278 165 5 chr11 7366518 7366949 -141416523 - LTR33 LTR ERVL -21 500 1 5785 135 113 5 chr11 7367914 7368409 -141415063 - Tigger3b DNA MER2_type -1797 1231 791 1670 168 7 11 chr11 7368409 7368683 -141414789 - AluJb SINE Alu -39 273 1 5785 135 113 5 chr11 7368683 7369298 -141414174 - Tigger3b DNA MER2_type -2237 791 1 2092 99 34 0 chr11 7369668 7369961 -141413511 - AluY SINE Alu -8 303 1 389 257 159 1 chr11 7370568 7370728 -141412744 + MER20B DNA MER1_type 31 215 -4 4319 71 0 17 chr11 7370775 7371352 -141412120 - L1PA8 LINE L1 -3 6169 5603 318 224 0 0 chr11 7371494 7371552 -141411920 - L2 LINE L2 -12 3301 3244 233 333 0 0 chr11 7371635 7371695 -141411777 + L2 LINE L2 2997 3056 -257 266 261 87 29 chr11 7372513 7372944 -141410528 + L1MEd LINE L1 865 1396 -4914 7075 36 21 0 chr11 7372967 7373835 -141409637 - L1P LINE L1 -1541 4605 3720 2117 170 28 19 chr11 7373835 7374339 -141409133 - MLT2A2 LTR ERVL -46 508 1 2383 172 11 5 chr11 7374480 7374893 -141408579 - MLT1C LTR MaLR -57 405 1 2014 134 3 19 chr11 7376963 7377270 -141406202 + AluSx SINE Alu 1 302 -10 2114 104 3 13 chr11 7378731 7379029 -141404443 + AluSx SINE Alu 3 297 -15 203 331 71 47 chr11 7379032 7379159 -141404313 + L2 LINE L2 2356 2485 -829 412 309 65 29 chr11 7380016 7380251 -141403221 + MIR SINE MIR 3 245 -17 7211 204 71 32 chr11 7381223 7382300 -141401172 - L1 LINE L1 -1181 4965 3932 1731 174 10 10 chr11 7382300 7382610 -141400862 - AluJo SINE Alu -2 310 1 7211 204 71 32 chr11 7382610 7382726 -141400746 - L1 LINE L1 -2214 3932 3822 2318 109 0 0 chr11 7382726 7383028 -141400444 - AluSq SINE Alu -11 302 1 7211 204 71 32 chr11 7383028 7383880 -141399592 - L1 LINE L1 -2324 3822 2839 41922 32 30 2 chr11 7383892 7389875 -141393597 - L1PA2 LINE L1 -1 6154 1 1265 269 97 6 chr11 7389876 7390371 -141393101 - L1 LINE L1 -3292 2854 2315 5125 179 29 13 chr11 7390387 7392317 -141391155 - L1PB4 LINE L1 -5 6151 4193 3800 232 57 41 chr11 7392333 7393049 -141390423 + L1M4 LINE L1 4012 4716 -1462 2033 130 11 0 chr11 7393049 7393333 -141390139 + AluSx SINE Alu 1 287 -25 3800 232 57 41 chr11 7393333 7394048 -141389424 + L1M4 LINE L1 4716 5461 -717 400 279 53 37 chr11 7394373 7394563 -141388909 - L1M4 LINE L1 -2697 3449 3257 504 176 0 0 chr11 7394599 7394701 -141388771 + CT-rich Low_complexity Low_complexity 3 104 0 216 135 0 0 chr11 7394808 7394845 -141388627 + (CA)n Simple_repeat Simple_repeat 2 38 0 254 360 75 6 chr11 7397285 7397446 -141386026 - MIR SINE MIR -5 257 86 252 361 23 23 chr11 7397582 7397712 -141385760 - L2 LINE L2 -263 3050 2921 187 359 34 60 chr11 7397826 7398060 -141385412 + L2 LINE L2 2185 2412 -902 328 264 27 18 chr11 7398399 7398509 -141384963 - MIR SINE MIR -78 184 74 843 300 38 54 chr11 7401298 7401744 -141381728 + LTR16A1 LTR ERVL 19 457 0 224 30 30 0 chr11 7401841 7401874 -141381598 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2263 225 52 2 chr11 7402201 7402810 -141380662 + L1 LINE L1 959 1598 -4543 1312 199 4 0 chr11 7402808 7403075 -141380397 + L1 LINE L1 5021 5288 -922 * 2033 117 25 0 chr11 7403075 7403378 -141380094 + AluSx SINE Alu 1 310 0 5782 185 52 84 chr11 7403398 7404139 -141379333 - L1P LINE L1 -1116 5030 4267 7785 16 1 1 chr11 7404139 7405217 -141378255 + L1PA3 LINE L1 5078 6155 0 5782 185 52 84 chr11 7405217 7406560 -141376912 - L1P LINE L1 -1879 4267 3013 638 188 57 17 chr11 7406570 7406746 -141376726 + L1 LINE L1 4427 4609 -1537 1040 167 0 32 chr11 7406750 7406936 -141376536 - MER46A DNA MER2_type -56 180 1 1130 237 87 11 chr11 7406936 7407294 -141376178 + L1MDa LINE L1 1503 1887 -4653 1366 194 26 23 chr11 7614990 7615340 -141168132 + L1M4 LINE L1 4635 4985 -1161 1568 177 0 18 chr11 7615440 7615717 -141167755 + AluJb SINE Alu 27 298 -14 236 303 91 40 chr11 7615865 7616040 -141167432 + MIR3 SINE MIR 21 204 -4 279 281 125 0 chr11 7618484 7618580 -141164892 - MIR SINE MIR -131 131 24 253 266 121 57 chr11 7618759 7618883 -141164589 - L2 LINE L2 0 3272 3141 578 201 175 36 chr11 7619418 7619612 -141163860 - L2 LINE L2 -1119 2195 1975 442 279 21 14 chr11 7619679 7619819 -141163653 + L2 LINE L2 1524 1664 -1650 1419 175 46 4 chr11 7619832 7620095 -141163377 + AluJo SINE Alu 6 279 -33 348 194 0 37 chr11 7620104 7620212 -141163260 + GA-rich Low_complexity Low_complexity 1 104 0 791 231 57 5 chr11 7620215 7620427 -141163045 + L2 LINE L2 1699 1921 -1393 1758 153 3 3 chr11 7622179 7622474 -141160998 + AluJo SINE Alu 15 309 -3 1336 137 32 40 chr11 7622638 7622887 -141160585 - AluJo SINE Alu 0 312 66 246 305 156 24 chr11 7622895 7623062 -141160410 + L2 LINE L2 2715 2903 -411 945 153 68 40 chr11 7623247 7623424 -141160048 + MER58A DNA MER1_type 43 224 0 265 358 96 3 chr11 7623545 7623809 -141159663 - L2 LINE L2 -241 3031 2738 298 364 71 7 chr11 7624386 7624540 -141158932 + MIR3 SINE MIR 22 185 -23 1424 163 77 52 chr11 7626073 7626398 -141157074 - MER44D DNA MER2_type 0 609 7 271 290 130 23 chr11 7626512 7626643 -141156829 - MER5A DNA MER1_type -22 167 23 263 356 19 0 chr11 7628741 7628845 -141154627 + MIR3 SINE MIR 81 186 -22 469 265 94 18 chr11 7629517 7629687 -141153785 + MER63A DNA MER1_type 27 209 -1 676 261 19 12 chr11 7630024 7630185 -141153287 - MIR SINE MIR -49 213 52 685 197 24 8 chr11 7631181 7631308 -141152164 - L2 LINE L2 -1 3312 3184 204 217 33 17 chr11 7631873 7631933 -141151539 - L2 LINE L2 -75 3238 3178 436 281 66 37 chr11 7632141 7632284 -141151188 + MIR3 SINE MIR 19 165 -97 2111 97 7 16 chr11 7632284 7632594 -141150878 + AluSq SINE Alu 1 307 -6 436 281 66 37 chr11 7632594 7632667 -141150805 + MIR3 SINE MIR 165 234 -28 1091 267 80 48 chr11 7632810 7633289 -141150183 + MLT1H LTR MaLR 14 549 0 211 222 37 19 chr11 7633971 7634025 -141149447 - L2 LINE L2 -1 3312 3258 695 146 0 85 chr11 7634025 7634155 -141149317 + AluJb SINE Alu 179 297 -15 1247 283 103 39 chr11 7634155 7634928 -141148544 - L2 LINE L2 -65 3248 2419 615 244 100 44 chr11 7634928 7635157 -141148315 - L2 LINE L2 -1058 2256 2015 1563 108 0 0 chr11 7635345 7635557 -141147915 + AluSg/x SINE Alu 89 300 -12 673 254 66 31 chr11 7636257 7636485 -141146987 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 7636536 7636689 -141146783 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 7636709 7636999 -141146473 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 7637505 7637749 -141145723 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 7637790 7638083 -141145389 - AluSx SINE Alu -17 295 1 1586 166 51 10 chr11 7638084 7638380 -141145092 - AluJb SINE Alu -4 308 1 1954 143 7 3 chr11 7638397 7638705 -141144767 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 7639842 7640129 -141143343 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 7640132 7640182 -141143290 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 7640375 7640539 -141142933 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 7640979 7641272 -141142200 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 7641658 7641729 -141141743 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 7641808 7642261 -141141211 - L2 LINE L2 0 3313 2839 734 231 44 0 chr11 7642355 7642515 -141140957 + FRAM SINE Alu 5 171 -5 353 326 22 7 chr11 7642534 7642669 -141140803 + GA-rich Low_complexity Low_complexity 3 139 0 186 253 67 53 chr11 7643847 7643922 -141139550 + L2 LINE L2 2865 2940 -374 231 185 192 39 chr11 7644322 7644452 -141139020 + L2 LINE L2 1325 1474 -1840 898 238 27 38 chr11 7644457 7644718 -141138754 + L2 LINE L2 2717 2974 -340 2288 76 3 0 chr11 7644930 7645221 -141138251 + AluSp SINE Alu 1 292 -21 3036 231 77 7 chr11 7645229 7646214 -141137258 + L1ME3A LINE L1 5120 6168 -2 2193 101 13 0 chr11 7646293 7646601 -141136871 + AluSx SINE Alu 1 312 0 536 274 46 46 chr11 7646723 7646898 -141136574 - MIR SINE MIR -29 233 59 2076 75 85 0 chr11 7647038 7647320 -141136152 + AluSg SINE Alu 1 306 -4 2213 189 79 38 chr11 7647665 7648115 -141135357 + MER119 DNA MER1_type 1 480 -103 1820 132 35 3 chr11 7648115 7648403 -141135069 + AluSx SINE Alu 1 297 -15 2213 189 79 38 chr11 7648403 7648512 -141134960 + MER119 DNA MER1_type 480 583 0 697 296 64 27 chr11 7649500 7649797 -141133675 + L3 LINE CR1 1075 1382 -195 327 273 130 0 chr11 7649810 7649964 -141133508 + L2 LINE L2 3139 3312 -1 213 286 0 0 chr11 7650122 7650178 -141133294 + L3 LINE CR1 1519 1574 -3 1511 184 27 7 chr11 7650603 7650902 -141132570 - AluJo SINE Alu -7 305 1 255 211 19 0 chr11 7650911 7650963 -141132509 - MARNA DNA Mariner -372 214 162 1957 108 0 71 chr11 7651596 7651919 -141131553 - AluSx SINE Alu -12 300 1 831 187 0 0 chr11 7652209 7652348 -141131124 + FLAM_C SINE Alu 2 140 -3 480 280 13 38 chr11 7652573 7652730 -141130742 - MIR SINE MIR -50 212 60 440 229 76 0 chr11 7652766 7652871 -141130601 + MIR SINE MIR 150 262 0 867 151 17 62 chr11 7653030 7653209 -141130263 - FRAM SINE Alu 0 176 6 213 154 0 0 chr11 7653746 7653785 -141129687 + (TG)n Simple_repeat Simple_repeat 2 40 0 271 207 73 24 chr11 7653869 7653889 -141129583 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 7653889 7653927 -141129545 + (GA)n Simple_repeat Simple_repeat 2 39 0 271 207 73 24 chr11 7653927 7653988 -141129484 + MER21B LTR ERV1 23 90 -773 1179 208 69 38 chr11 7654036 7654369 -141129103 - MSTD LTR MaLR -49 379 1 810 216 61 22 chr11 7654369 7654488 -141128984 + MER21B LTR ERV1 280 410 -453 288 0 0 0 chr11 7654488 7654520 -141128952 + (CA)n Simple_repeat Simple_repeat 2 33 0 810 216 61 22 chr11 7654520 7654579 -141128893 + MER21B LTR ERV1 410 465 -398 186 229 0 0 chr11 7654719 7654754 -141128718 + MIR SINE MIR 216 250 -12 242 286 66 33 chr11 7654836 7654927 -141128545 - L2 LINE L2 -2 3270 3177 381 308 115 0 chr11 7655599 7655729 -141127743 + L2 LINE L2 3111 3255 -17 2300 59 28 0 chr11 7655813 7656100 -141127372 + AluY SINE Alu 1 295 -16 2295 95 0 6 chr11 7656192 7656507 -141126965 + AluSq SINE Alu 1 313 0 677 258 17 77 chr11 7656663 7656896 -141126576 - MIR SINE MIR -25 237 19 1734 107 14 43 chr11 7656965 7657245 -141126227 - AluSx SINE Alu -30 282 11 1600 178 15 15 chr11 7657339 7657677 -141125795 + L1M4 LINE L1 4993 5330 -816 * 4754 142 19 11 chr11 7657673 7658455 -141125017 - L1MB3 LINE L1 -142 6041 5254 668 264 84 71 chr11 7658550 7658713 -141124759 - MLT1G1 LTR MaLR -157 398 238 2307 74 3 3 chr11 7658713 7659023 -141124449 - AluSx SINE Alu -2 310 1 668 264 84 71 chr11 7659023 7659219 -141124253 - MLT1G1 LTR MaLR -317 238 10 2082 111 3 0 chr11 7659499 7659787 -141123685 + AluSx SINE Alu 1 289 -23 1600 108 0 136 chr11 7659986 7660139 -141123333 - L1PA15 LINE L1 -1 6164 6074 2089 100 7 0 chr11 7660139 7660430 -141123042 - AluSx SINE Alu -2 310 18 1600 108 0 136 chr11 7660430 7660592 -141122880 - L1PA15 LINE L1 -91 6074 5892 21 36 0 0 chr11 7660717 7660745 -141122727 + AT_rich Low_complexity Low_complexity 1 28 0 287 100 25 0 chr11 7661140 7661180 -141122292 + Alu SINE Alu 1 41 -262 194 311 170 19 chr11 7661338 7661444 -141122028 - L2 LINE L2 -5 3267 3146 280 245 75 47 chr11 7662637 7662743 -141120729 - MIR SINE MIR -126 136 28 1917 122 6 39 chr11 7662749 7663060 -141120412 - AluJb SINE Alu -11 301 1 2209 55 45 7 chr11 7663067 7663357 -141120115 - AluY SINE Alu -10 301 1 5172 164 87 88 chr11 7664248 7664495 -141118977 - Charlie1a DNA MER1_type -1306 1455 1209 1549 169 17 33 chr11 7664495 7664815 -141118657 - AluJo SINE Alu 0 312 1 5172 164 87 88 chr11 7664815 7665520 -141117952 - Charlie1a DNA MER1_type -1552 1209 505 2043 124 3 0 chr11 7665520 7665811 -141117661 - AluSp SINE Alu -21 292 1 5172 164 87 88 chr11 7665811 7665849 -141117623 - Charlie1a DNA MER1_type -2256 505 468 1980 83 34 0 chr11 7665849 7666151 -141117321 - AluSc SINE Alu 0 319 9 5172 164 87 88 chr11 7666151 7666614 -141116858 - Charlie1a DNA MER1_type -2293 468 1 249 211 77 0 chr11 7666948 7667000 -141116472 - Charlie8 DNA MER1_type -993 1424 1369 24 77 0 0 chr11 7667058 7667110 -141116362 + AT_rich Low_complexity Low_complexity 1 52 0 334 237 128 51 chr11 7667373 7667529 -141115943 + L2 LINE L2 3146 3313 0 747 183 15 0 chr11 7667627 7667758 -141115714 + FLAM_C SINE Alu 1 133 0 603 270 48 58 chr11 7668108 7668566 -141114906 + L1ME4a LINE L1 5472 5925 -196 372 325 6 44 chr11 7669956 7670120 -141113352 + MIR SINE MIR 6 160 -62 371 338 181 32 chr11 7670187 7671252 -141112220 - L2 LINE L2 -345 2969 1746 2524 40 0 0 chr11 7671264 7671562 -141111910 - AluY SINE Alu -13 298 1 801 109 39 8 chr11 7672063 7672191 -141111281 - FLAM_C SINE Alu -11 132 1 25 0 0 0 chr11 7673080 7673105 -141110367 + GC_rich Low_complexity Low_complexity 1 25 0 880 199 96 58 chr11 7673728 7673989 -141109483 + MER21B LTR ERV1 542 812 -51 441 128 32 85 chr11 7675238 7675332 -141108140 + L1MC3 LINE L1 7697 7785 0 539 289 58 0 chr11 7675385 7675541 -141107931 + MIR SINE MIR 49 213 -49 2046 123 0 16 chr11 7676284 7676601 -141106871 - AluSx SINE Alu 0 312 1 200 323 15 0 chr11 7677225 7677290 -141106182 + MIR SINE MIR 197 262 0 300 236 0 0 chr11 7677517 7677606 -141105866 + (CA)n Simple_repeat Simple_repeat 1 89 0 281 233 56 11 chr11 7677788 7677878 -141105594 - L2 LINE L2 -3 3269 3176 2138 102 6 10 chr11 7680917 7681231 -141102241 - AluSp SINE Alu 0 313 1 304 330 82 79 chr11 7681553 7682159 -141101313 - L2 LINE L2 0 3313 2694 236 312 50 64 chr11 7682519 7682660 -141100812 - L2 LINE L2 -2548 766 628 318 345 35 9 chr11 7682758 7682874 -141100598 - L2 LINE L2 -2878 436 318 394 313 22 8 chr11 7682898 7683032 -141100440 + L1ME LINE L1 5449 5584 -537 243 0 0 0 chr11 7683032 7683059 -141100413 + (CA)n Simple_repeat Simple_repeat 2 28 0 500 251 126 13 chr11 7683083 7683488 -141099984 + L1ME4a LINE L1 5191 5641 -525 2334 73 0 3 chr11 7684021 7684323 -141099149 + AluY SINE Alu 1 301 -10 1367 174 8 30 chr11 7684463 7684727 -141098745 - AluJo SINE Alu -10 302 45 605 227 128 34 chr11 7684746 7685099 -141098373 + L1ME4a LINE L1 5733 6118 -3 412 164 0 125 chr11 7685635 7685739 -141097733 + AluJo SINE Alu 87 177 -125 2151 97 3 7 chr11 7686000 7686300 -141097172 + AluSx SINE Alu 6 304 -8 1784 145 6 25 chr11 7687969 7688287 -141095185 + AluJo SINE Alu 1 312 0 575 265 160 10 chr11 7688389 7688589 -141094883 - MIR SINE MIR -27 235 6 741 164 8 15 chr11 7688781 7688915 -141094557 - FLAM_A SINE Alu 0 133 1 419 191 23 183 chr11 7690536 7690798 -141092674 + L1MC5 LINE L1 7710 7929 -32 571 250 99 16 chr11 7690843 7691035 -141092437 + L1MC4 LINE L1 7288 7495 -547 356 297 0 0 chr11 7691019 7691137 -141092335 + L1MC5 LINE L1 7311 7428 -533 * 614 99 0 141 chr11 7691180 7691301 -141092171 + AluJo SINE Alu 85 188 -124 260 130 0 0 chr11 7691363 7691409 -141092063 + MLT1G1 LTR MaLR 532 577 -18 180 375 16 16 chr11 7691557 7691685 -141091787 + L2 LINE L2 2932 3059 -213 1544 182 3 24 chr11 7691926 7692223 -141091249 + AluJb SINE Alu 1 291 -21 206 209 0 23 chr11 7692403 7692446 -141091026 + L2 LINE L2 3256 3297 -16 1930 119 7 7 chr11 7692923 7693216 -141090256 + AluSx SINE Alu 1 293 -19 2049 103 3 3 chr11 7693363 7693645 -141089827 + AluSx SINE Alu 2 283 -29 1126 279 45 45 chr11 7694159 7694711 -141088761 + L1ME LINE L1 5267 5818 -303 3174 169 59 45 chr11 7694791 7695488 -141087984 - L1MB4 LINE L1 0 6180 5474 182 61 0 30 chr11 7695574 7695607 -141087865 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 197 239 22 0 chr11 7695842 7695888 -141087584 + MIR SINE MIR 28 74 -134 551 199 252 0 chr11 7696978 7697129 -141086343 + MER5A DNA MER1_type 1 189 0 1871 118 28 0 chr11 7697863 7698152 -141085320 + AluSx SINE Alu 1 297 -15 857 223 84 44 chr11 7698428 7698679 -141084793 - MIR SINE MIR 0 262 2 306 0 0 0 chr11 7700085 7700119 -141083353 + (CA)n Simple_repeat Simple_repeat 2 35 0 183 80 0 0 chr11 7700388 7700413 -141083059 + (T)n Simple_repeat Simple_repeat 1 25 0 320 299 99 30 chr11 7702187 7702388 -141081084 - MIR SINE MIR -44 218 4 381 102 0 0 chr11 7704260 7704319 -141079153 + (TC)n Simple_repeat Simple_repeat 1 59 0 1730 147 0 18 chr11 7705221 7705500 -141077972 - AluJo SINE Alu -21 291 18 303 324 76 44 chr11 7705501 7705659 -141077813 - MIR SINE MIR -65 143 2 211 325 18 65 chr11 7705859 7706028 -141077444 - MIR SINE MIR -30 232 72 272 250 120 10 chr11 7706077 7706177 -141077295 + MIR3 SINE MIR 4 114 -94 764 183 0 0 chr11 7706424 7706560 -141076912 - FLAM_A SINE Alu 0 136 1 265 204 0 0 chr11 7707082 7707126 -141076346 - MIR SINE MIR -10 252 209 767 277 124 38 chr11 7707521 7707947 -141075525 + L2 LINE L2 2442 2904 -410 485 282 48 27 chr11 7708102 7708290 -141075182 + L2 LINE L2 3117 3308 -5 332 308 36 86 chr11 7708902 7709262 -141074210 + L2 LINE L2 2830 3171 -101 1809 108 20 17 chr11 7709942 7710239 -141073233 - AluSx SINE Alu -14 298 1 2018 97 28 0 chr11 7712497 7712787 -141070685 - AluSq SINE Alu -15 298 1 1355 103 41 0 chr11 7713453 7713648 -141069824 + AluSp SINE Alu 79 281 -32 2279 62 28 0 chr11 7713888 7714177 -141069295 - AluY SINE Alu -14 297 1 407 262 99 0 chr11 7714886 7715027 -141068445 - Charlie2a DNA MER1_type -1199 1663 1509 1869 151 87 53 chr11 7716163 7716579 -141066893 + MSTB1 LTR MaLR 1 430 -2 1485 206 133 50 chr11 7716884 7716940 -141066532 + MER20B DNA MER1_type 8 58 -725 874 129 0 50 chr11 7716940 7717080 -141066392 - FLAM_C SINE Alu 0 133 1 1485 206 133 50 chr11 7717080 7717675 -141065797 + MER20B DNA MER1_type 58 783 0 705 141 107 25 chr11 7718008 7718129 -141065343 + FLAM_C SINE Alu 2 132 -11 2060 78 14 17 chr11 7718269 7718564 -141064908 - AluSg SINE Alu -16 294 1 182 282 183 0 chr11 7719339 7719410 -141064062 + L3 LINE CR1 1436 1519 -58 258 304 59 20 chr11 7720526 7720628 -141062844 + MIR SINE MIR 35 140 -68 1964 149 9 15 chr11 7720879 7721033 -141062439 - MER2 DNA MER2_type -10 335 182 1614 177 7 7 chr11 7721033 7721349 -141062123 + AluJo SINE Alu 1 316 0 1964 149 9 15 chr11 7721349 7721529 -141061943 - MER2 DNA MER2_type -163 182 2 2020 85 66 0 chr11 7723047 7723319 -141060153 - AluSq SINE Alu -23 290 1 651 228 82 5 chr11 7723916 7724100 -141059372 - MIR SINE MIR 0 262 65 1698 131 22 47 chr11 7724100 7724420 -141059052 + AluJo SINE Alu 1 312 0 608 114 48 6 chr11 7726613 7726851 -141056621 - AluSc SINE Alu -23 286 6 3592 115 22 28 chr11 7726851 7727432 -141056040 + LTR9B LTR ERV1 67 644 0 205 301 171 5 chr11 7727513 7727712 -141055760 + L2 LINE L2 718 949 -2365 257 271 281 55 chr11 7730315 7730475 -141052997 + L2 LINE L2 1235 1357 -1957 2023 102 3 24 chr11 7730475 7730770 -141052702 - AluSx SINE Alu -23 289 1 257 271 281 55 chr11 7730770 7731085 -141052387 + L2 LINE L2 1357 1818 -1496 415 291 52 107 chr11 7731369 7731771 -141051701 + L2 LINE L2 2933 3312 -1 370 267 69 0 chr11 7733341 7733457 -141050015 - MIR SINE MIR -80 182 59 2291 84 3 3 chr11 7733597 7733896 -141049576 + AluSp SINE Alu 1 299 -14 303 263 105 0 chr11 7734616 7734711 -141048761 + MIR SINE MIR 81 185 -77 369 0 0 0 chr11 7735681 7735722 -141047750 + (CA)n Simple_repeat Simple_repeat 1 41 0 516 290 135 65 chr11 7736319 7736511 -141046961 - L2 LINE L2 0 3313 3136 2274 79 3 3 chr11 7736511 7736816 -141046656 + AluSp SINE Alu 1 305 -8 516 290 135 65 chr11 7736816 7737054 -141046418 - L2 LINE L2 -177 3136 2853 862 157 42 6 chr11 7737063 7737229 -141046243 + L1MB8 LINE L1 5984 6155 -23 2269 72 0 7 chr11 7738312 7738604 -141044868 - AluSg SINE Alu -20 290 1 2105 109 17 0 chr11 7741683 7741977 -141041495 - AluSx SINE Alu -13 299 1 363 23 0 0 chr11 7742611 7742654 -141040818 - 5S rRNA rRNA -78 43 1 227 297 77 0 chr11 7743498 7743589 -141039883 + L2 LINE L2 3210 3307 -6 752 201 81 11 chr11 7744957 7745131 -141038341 - MER20 DNA MER1_type -2 217 32 248 104 42 0 chr11 7745138 7745186 -141038286 + GA-rich Low_complexity Low_complexity 3 52 0 203 149 0 21 chr11 7745292 7745339 -141038133 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2250 70 0 3 chr11 7749069 7749355 -141034117 + AluY SINE Alu 13 297 -14 2016 237 33 10 chr11 7749698 7750165 -141033307 + LTR40a LTR ERVL 1 478 -41 992 169 142 9 chr11 7750165 7750384 -141033088 + MLT1A1 LTR MaLR 1 248 -117 199 216 6 210 chr11 7750385 7750419 -141033053 - MIR3 SINE MIR -48 160 121 2061 82 64 3 chr11 7750419 7750701 -141032771 - AluSq SINE Alu -14 299 1 199 216 6 210 chr11 7750701 7750842 -141032630 - MIR3 SINE MIR -87 121 50 241 283 83 32 chr11 7751481 7751675 -141031797 - MIR SINE MIR -1 261 11 524 338 57 11 chr11 7752410 7752691 -141030781 + L2 LINE L2 1964 2257 -1057 423 38 0 0 chr11 7753002 7753055 -141030417 + (CA)n Simple_repeat Simple_repeat 2 54 0 1683 164 11 3 chr11 7753057 7753344 -141030128 - AluJo SINE Alu -21 291 3 28 29 0 0 chr11 7753349 7753384 -141030088 + AT_rich Low_complexity Low_complexity 1 35 0 487 319 61 67 chr11 7753630 7753943 -141029529 + L2 LINE L2 2961 3271 -1 795 120 0 0 chr11 7756631 7756739 -141026733 + FLAM_C SINE Alu 6 113 -30 1895 162 3 13 chr11 7757226 7757541 -141025931 + AluJb SINE Alu 1 312 0 1286 221 111 48 chr11 7758868 7759210 -141024262 + MLT1G3 LTR MaLR 1 320 -235 1132 163 4 40 chr11 7759210 7759437 -141024035 - AluJo SINE Alu -8 304 86 1740 145 3 29 chr11 7759212 7759522 -141023950 - AluJo SINE Alu -10 302 1 1286 221 111 48 chr11 7759522 7759693 -141023779 + MLT1G3 LTR MaLR 405 555 0 457 276 112 23 chr11 7759777 7759991 -141023481 + MLT1G1-int LTR MaLR 309 541 -830 2242 89 7 0 chr11 7760105 7760407 -141023065 + AluSp SINE Alu 1 304 -9 311 160 170 0 chr11 7760416 7760439 -141023033 + L1MA10 LINE L1 6218 6236 -98 207 69 0 0 chr11 7760439 7760468 -141023004 + (TG)n Simple_repeat Simple_repeat 1 29 0 311 160 170 0 chr11 7760468 7760544 -141022928 + L1MA10 LINE L1 6236 6334 0 2155 116 0 0 chr11 7760589 7760882 -141022590 + AluSx SINE Alu 1 293 -19 1658 150 37 20 chr11 7761075 7761369 -141022103 - AluJb SINE Alu -13 299 1 2366 76 0 0 chr11 7761453 7761754 -141021718 - AluSp SINE Alu -12 301 1 333 229 21 100 chr11 7762034 7762174 -141021298 + MLT1G1-int LTR MaLR 1055 1183 -188 1514 176 20 14 chr11 7762245 7762540 -141020932 - AluJb SINE Alu -15 297 1 923 118 0 0 chr11 7762540 7762675 -141020797 - AluJb SINE Alu -177 135 1 306 271 71 43 chr11 7762677 7762817 -141020655 + MLT1G1-int LTR MaLR 1221 1364 -7 2246 243 78 5 chr11 7762817 7763369 -141020103 + MLT1G1 LTR MaLR 4 595 0 311 258 22 22 chr11 7763681 7763770 -141019702 + MIR3 SINE MIR 106 194 -14 196 317 49 12 chr11 7764004 7764086 -141019386 - L2 LINE L2 -458 2856 2772 444 254 35 4 chr11 7764197 7764326 -141019146 + MIR3 SINE MIR 65 197 -11 368 212 121 0 chr11 7764452 7764551 -141018921 - L2 LINE L2 -10 3303 3193 265 250 0 48 chr11 7765931 7766015 -141017457 + GA-rich Low_complexity Low_complexity 3 82 0 574 249 93 72 chr11 7767290 7767527 -141015945 - MIR SINE MIR -10 252 11 3419 76 0 18 chr11 7768255 7768713 -141014759 + pTR5 LTR ERV1 1572 2021 -417 381 192 52 26 chr11 7768714 7768826 -141014646 + LTR30 LTR ERV1 375 642 -80 1649 97 9 4 chr11 7768826 7769064 -141014408 + pTR5 LTR ERV1 136 396 -2042 327 188 42 21 chr11 7769113 7769209 -141014263 + MER113 DNA MER1_type? 2 99 -422 705 193 64 138 chr11 7769273 7769490 -141013982 - L2 LINE L2 -4 3309 3122 2193 102 3 0 chr11 7769490 7769793 -141013679 + AluSx SINE Alu 1 304 -8 705 193 64 138 chr11 7769793 7769901 -141013571 - L2 LINE L2 -191 3122 3008 4984 172 35 16 chr11 7770120 7770274 -141013198 + L1MB7 LINE L1 4176 4326 -1858 1959 154 0 0 chr11 7770274 7770572 -141012900 + AluSx SINE Alu 1 298 -14 4984 172 35 16 chr11 7770572 7771349 -141012123 + L1MB7 LINE L1 4326 5087 -1097 306 0 0 0 chr11 7771349 7771383 -141012089 + (CA)n Simple_repeat Simple_repeat 1 34 0 4984 172 35 16 chr11 7771383 7772107 -141011365 + L1MB7 LINE L1 5087 6157 -27 1231 195 39 12 chr11 7772107 7772361 -141011111 + L1MB7 LINE L1 5912 6175 -9 4984 172 35 16 chr11 7772361 7772381 -141011091 + L1MB7 LINE L1 6157 6175 -9 966 126 0 0 chr11 7772964 7773107 -141010365 - AluJb SINE Alu -169 143 1 204 40 0 0 chr11 7773144 7773169 -141010303 + (ATG)n Simple_repeat Simple_repeat 2 26 0 201 158 0 53 chr11 7773228 7773266 -141010206 + L2 LINE L2 3200 3235 -37 219 298 81 24 chr11 7774440 7774564 -141008908 + MIR SINE MIR 44 174 -88 367 154 231 0 chr11 7774684 7774788 -141008684 - L2 LINE L2 -6 3266 3139 682 223 37 53 chr11 7774948 7775136 -141008336 - MIR SINE MIR -45 217 33 2279 99 3 3 chr11 7825211 7825503 -140957969 - AluSg SINE Alu -18 292 1 2441 79 0 7 chr11 7825503 7825808 -140957664 - AluSp SINE Alu -10 303 1 1549 117 44 0 chr11 7825816 7826065 -140957407 - L1MA5A LINE L1 -5 6292 6033 372 154 0 10 chr11 7826461 7826536 -140956936 - L1M4 LINE L1 -2303 3843 3772 1735 186 0 7 chr11 7828813 7829119 -140954353 - AluJo SINE Alu -8 304 1 348 213 0 0 chr11 7829768 7829829 -140953643 - AluJ/FLAM SINE Alu -222 80 20 1846 170 0 16 chr11 7830247 7830559 -140952913 + AluJb SINE Alu 1 307 -5 35 54 0 0 chr11 7830634 7830690 -140952782 + AT_rich Low_complexity Low_complexity 1 56 0 4232 134 42 8 chr11 7830702 7830828 -140952644 - L1PB3 LINE L1 -10 6144 6024 186 43 0 0 chr11 7830828 7830851 -140952621 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 4232 134 42 8 chr11 7830851 7831435 -140952037 - L1PB3 LINE L1 -130 6024 5410 2112 139 0 3 chr11 7831871 7832172 -140951300 + AluSx SINE Alu 1 300 -12 664 221 62 87 chr11 7832190 7832512 -140950960 + HAL1 LINE L1 46 359 -2148 198 103 0 0 chr11 7832542 7832571 -140950901 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1604 119 0 0 chr11 7832670 7832889 -140950583 - AluJb SINE Alu -19 293 75 1187 188 0 0 chr11 7832991 7833198 -140950274 - MER47A DNA MER2_type -159 207 1 739 178 0 8 chr11 7833823 7833952 -140949520 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr11 7833964 7833985 -140949487 + AT_rich Low_complexity Low_complexity 1 21 0 1787 185 8 3 chr11 7833985 7834337 -140949135 - L1MB3 LINE L1 -16 6167 5814 7279 52 2 1 chr11 7834345 7835237 -140948235 - L1PA5 LINE L1 -8 6146 5254 2411 66 0 3 chr11 7835886 7836175 -140947297 - AluY SINE Alu -23 288 1 1860 164 7 3 chr11 7836710 7837009 -140946463 - AluJo SINE Alu -12 300 1 1549 198 128 6 chr11 7838024 7838382 -140945090 + L1ME1 LINE L1 5425 5826 -340 1897 130 4 7 chr11 7839838 7840115 -140943357 - AluSx SINE Alu -26 286 11 350 203 25 0 chr11 7840462 7840541 -140942931 - L1MEc LINE L1 -3751 2464 2384 649 178 0 0 chr11 7840553 7840660 -140942812 - MLT1D LTR MaLR -44 461 355 636 234 77 28 chr11 7840660 7840866 -140942606 - L1MEc LINE L1 -3816 2399 2219 2008 94 0 0 chr11 7840866 7841110 -140942362 - AluSc SINE Alu -65 244 1 636 234 77 28 chr11 7841110 7841151 -140942321 - L1MEc LINE L1 -3996 2219 2181 1423 126 9 23 chr11 7841166 7841381 -140942091 + AluSg/x SINE Alu 85 296 -16 1292 246 94 24 chr11 7841390 7841605 -140941867 + L1 LINE L1 3224 3422 -2724 1568 145 0 38 chr11 7841605 7841867 -140941605 + AluJb SINE Alu 56 307 -5 1292 246 94 24 chr11 7841867 7842160 -140941312 + L1 LINE L1 3422 3768 -2378 301 306 35 0 chr11 7842163 7842248 -140941224 + L1 LINE L1 3821 3908 -2238 23 0 0 0 chr11 7843251 7843274 -140940198 + AT_rich Low_complexity Low_complexity 1 23 0 2626 36 3 3 chr11 7843274 7843578 -140939894 + AluSp SINE Alu 1 304 -9 327 226 165 9 chr11 7844059 7844174 -140939298 - L2 LINE L2 -4 3309 3177 192 97 0 0 chr11 7844218 7844249 -140939223 + (T)n Simple_repeat Simple_repeat 1 31 0 9597 39 2 2 chr11 7844349 7845497 -140937975 + L1P LINE L1 3413 4560 -1586 557 258 36 6 chr11 7845663 7845830 -140937642 - MIR3 SINE MIR -21 187 16 228 297 109 32 chr11 7845883 7846202 -140937270 - L2 LINE L2 -325 2947 2606 1975 157 10 0 chr11 7846491 7846796 -140936676 + AluJo SINE Alu 1 308 -4 233 273 0 78 chr11 7847278 7847355 -140936117 - L2 LINE L2 -2 3311 3241 1702 194 0 7 chr11 7848455 7848764 -140934708 - AluJb SINE Alu -5 307 1 1217 47 0 0 chr11 7850149 7850298 -140933174 - AluY SINE Alu 0 311 163 1627 95 5 0 chr11 7850398 7850609 -140932863 - AluY SINE Alu -99 212 1 2217 91 20 7 chr11 7851821 7852117 -140931355 - AluSc SINE Alu -9 300 1 1198 229 138 52 chr11 7852208 7852365 -140931107 - MER113 DNA MER1_type? -41 480 338 1826 168 3 7 chr11 7852365 7852674 -140930798 - AluJb SINE Alu -4 308 1 1198 229 138 52 chr11 7852674 7852810 -140930662 - MER113 DNA MER1_type? -183 338 215 2327 88 0 7 chr11 7852810 7853107 -140930365 - AluSg SINE Alu -15 295 1 1198 229 138 52 chr11 7853107 7853254 -140930218 - MER113 DNA MER1_type? -306 215 1 32 26 0 0 chr11 7853525 7853564 -140929908 + AT_rich Low_complexity Low_complexity 1 39 0 1543 178 4 26 chr11 7853710 7853979 -140929493 + AluJo SINE Alu 30 292 -20 1678 158 12 59 chr11 7854760 7855082 -140928390 - AluJo SINE Alu -5 307 1 1145 142 0 0 chr11 7855369 7855531 -140927941 + FRAM SINE Alu 2 163 -13 2266 80 0 27 chr11 7856211 7856510 -140926962 - AluY SINE Alu -20 291 1 25 0 0 0 chr11 7856527 7856552 -140926920 + AT_rich Low_complexity Low_complexity 1 25 0 931 146 14 0 chr11 7857942 7858086 -140925386 + FAM SINE Alu 27 172 -13 352 161 0 0 chr11 7858089 7858145 -140925327 + FLAM_A SINE Alu 75 130 -3 2329 70 0 0 chr11 7859338 7859622 -140923850 - AluY SINE Alu -27 284 1 1623 180 3 18 chr11 7859731 7860015 -140923457 - AluJo SINE Alu -22 290 11 379 328 0 0 chr11 7860884 7861000 -140922472 - L2 LINE L2 0 3313 3198 2278 94 7 3 chr11 7862151 7862458 -140921014 - AluSx SINE Alu -4 308 1 2220 126 0 13 chr11 7864297 7864606 -140918866 - AluJb SINE Alu -7 305 1 267 250 94 113 chr11 7865237 7865397 -140918075 + MIR SINE MIR 32 188 -74 1286 114 95 5 chr11 7865611 7865822 -140917650 - MER30 DNA MER1_type 0 230 1 2182 96 24 0 chr11 7866106 7866399 -140917073 + AluSx SINE Alu 3 302 -10 21 0 0 0 chr11 7866399 7866420 -140917052 + AT_rich Low_complexity Low_complexity 1 21 0 263 71 24 0 chr11 7867206 7867248 -140916224 + (TG)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr11 7867441 7867464 -140916008 + GC_rich Low_complexity Low_complexity 1 23 0 2858 237 65 38 chr11 7867946 7869081 -140914391 - L1M4c LINE L1 -4471 2667 1363 821 239 114 0 chr11 7869081 7869282 -140914190 - MER58A DNA MER1_type 0 224 1 2858 237 65 38 chr11 7869282 7869444 -140914028 - L1M4c LINE L1 -5775 1363 1207 264 59 0 0 chr11 7869467 7869501 -140913971 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 595 223 0 0 chr11 7869505 7869617 -140913855 - FLAM_A SINE Alu -18 115 4 391 268 24 16 chr11 7869669 7869792 -140913680 - L1M4c LINE L1 -5667 1188 1065 1211 250 54 11 chr11 7869804 7870084 -140913388 + AluJo SINE Alu 13 304 -8 339 357 75 12 chr11 7870087 7870339 -140913133 - L1M4c LINE L1 -5792 1063 796 255 254 29 133 chr11 7870458 7870599 -140912873 - L1M4c LINE L1 -6613 246 125 1994 103 3 64 chr11 7870599 7870911 -140912561 - AluSx SINE Alu -19 293 1 255 254 29 133 chr11 7870911 7870942 -140912530 - L1M4c LINE L1 -6734 125 92 1634 114 8 0 chr11 7870954 7871190 -140912282 - Tigger5 DNA MER2_type 0 2323 2086 245 177 48 0 chr11 7871451 7871513 -140911959 + CT-rich Low_complexity Low_complexity 1 65 0 1483 206 3 55 chr11 7871513 7871715 -140911757 - AluJb SINE Alu -1 311 131 1709 150 4 0 chr11 7871715 7871968 -140911504 + AluSx SINE Alu 41 294 -18 1483 206 3 55 chr11 7871968 7872091 -140911381 - AluJb SINE Alu -181 131 3 2117 131 0 0 chr11 7872185 7872496 -140910976 + AluSx SINE Alu 1 311 0 1906 157 0 20 chr11 7872520 7872825 -140910647 + AluJo SINE Alu 1 299 -13 335 219 116 43 chr11 7872852 7873016 -140910456 - L1ME4a LINE L1 -73 6048 5873 1379 222 75 28 chr11 7873085 7873281 -140910191 - MLT1A1 LTR MaLR -1 364 146 2386 84 3 7 chr11 7873281 7873591 -140909881 - AluSq SINE Alu -4 309 1 1379 222 75 28 chr11 7873591 7873714 -140909758 - MLT1A1 LTR MaLR -219 146 30 678 266 53 7 chr11 7873965 7874176 -140909296 - L1ME3 LINE L1 -1 6161 5935 659 168 50 17 chr11 7874199 7874318 -140909154 - FLAM_C SINE Alu -19 124 2 330 181 234 0 chr11 7874746 7874840 -140908632 - L1ME4a LINE L1 -12 6109 5994 816 219 96 86 chr11 7874916 7875322 -140908150 - L1ME3 LINE L1 -357 5764 5355 340 83 42 14 chr11 7875343 7875415 -140908057 - L1MA7 LINE L1 0 6291 6218 1232 216 29 19 chr11 7875519 7875834 -140907638 + L1MB7 LINE L1 5852 6169 -15 2358 86 20 0 chr11 7875839 7876140 -140907332 - AluY SINE Alu -4 307 1 26 64 0 0 chr11 7877126 7877173 -140906299 + AT_rich Low_complexity Low_complexity 1 47 0 1765 161 0 21 chr11 7877344 7877635 -140905837 - AluJo SINE Alu -19 293 9 242 298 133 40 chr11 7877698 7877849 -140905623 - L2 LINE L2 -9 3263 3099 470 211 28 18 chr11 7878064 7878173 -140905299 - MIR SINE MIR 0 262 153 309 263 21 0 chr11 7878528 7878623 -140904849 - MIR SINE MIR 0 262 166 184 342 50 33 chr11 7878621 7878741 -140904731 - L2 LINE L2 0 3272 3151 * 280 235 20 29 chr11 7878743 7878845 -140904627 - MIR SINE MIR -97 165 65 694 144 5 40 chr11 7878845 7879047 -140904425 + AluJ SINE Alu 87 312 0 377 121 0 15 chr11 7879049 7879115 -140904357 + (GGAGAA)n Simple_repeat Simple_repeat 3 67 0 1091 148 19 19 chr11 7880047 7880256 -140903216 - AluSg/x SINE Alu -20 292 84 432 0 0 0 chr11 7880355 7880403 -140903069 + (TG)n Simple_repeat Simple_repeat 2 49 0 453 71 14 71 chr11 7880685 7880755 -140902717 + Charlie3 DNA MER1_type 2631 2696 -14 2360 100 0 3 chr11 7880855 7881155 -140902317 - AluSg SINE Alu -11 299 1 300 197 61 0 chr11 7882897 7882963 -140900509 + FAM SINE Alu 89 158 -17 1544 137 9 4 chr11 7883019 7883246 -140900226 - AluJo SINE Alu 0 312 85 2063 111 13 46 chr11 7883309 7883479 -140899993 - AluSx SINE Alu -15 297 140 2308 94 10 0 chr11 7883479 7883787 -140899685 - AluY SINE Alu 0 311 1 2063 111 13 46 chr11 7883787 7883923 -140899549 - AluSx SINE Alu -172 140 1 273 289 164 19 chr11 7884652 7884756 -140898716 - MIR SINE MIR -119 143 25 2388 94 3 0 chr11 7886701 7887008 -140896464 - AluSg SINE Alu -2 308 1 2068 132 0 3 chr11 7887010 7887305 -140896167 - AluJb SINE Alu -18 294 1 2264 108 0 0 chr11 7887640 7887935 -140895537 - AluSg SINE Alu -15 295 1 266 248 28 50 chr11 7889016 7889157 -140894315 + L1M4 LINE L1 4989 5126 -1020 1005 198 86 5 chr11 7890722 7890919 -140892553 - AluJo SINE Alu -99 213 1 384 263 68 8 chr11 7891182 7891315 -140892157 + MIR SINE MIR 51 191 -71 1649 220 6 9 chr11 7891323 7891668 -140891804 - MER2 DNA MER2_type 0 344 1 393 22 0 0 chr11 7891985 7892031 -140891441 + (CA)n Simple_repeat Simple_repeat 2 47 0 324 228 331 7 chr11 7893317 7893462 -140890010 - MIR3 SINE MIR -2 206 15 322 165 141 47 chr11 7894045 7894130 -140889342 - HY4 scRNA scRNA 0 93 1 21 0 0 0 chr11 7894185 7894206 -140889266 + AT_rich Low_complexity Low_complexity 1 21 0 1158 164 200 0 chr11 7894227 7894452 -140889020 - AluJb SINE Alu -22 290 21 2128 115 14 0 chr11 7894474 7894761 -140888711 - AluSx SINE Alu -21 291 1 5913 140 56 15 chr11 7894764 7895182 -140888290 - L1MC1 LINE L1 -11 6322 5922 2538 66 0 22 chr11 7895182 7895500 -140887972 - AluY SINE Alu 0 311 1 5913 140 56 15 chr11 7895500 7896126 -140887346 - L1MC1 LINE L1 -411 5922 5237 663 191 35 0 chr11 7896140 7896281 -140887191 - L1MC1 LINE L1 -1083 5063 4918 26575 67 1 1 chr11 7896381 7899755 -140883717 - L1P LINE L1 -2763 3383 11 3317 162 19 14 chr11 7899764 7900643 -140882829 - L1MB2 LINE L1 -346 6061 5180 2186 138 59 0 chr11 7900644 7901000 -140882472 - L1MB2 LINE L1 -5972 412 36 961 163 35 23 chr11 7901642 7901814 -140881658 + FRAM SINE Alu 3 176 0 185 189 0 0 chr11 7901911 7901948 -140881524 + MIR SINE MIR 220 256 -6 32 0 0 0 chr11 7903103 7903135 -140880337 + AT_rich Low_complexity Low_complexity 1 32 0 1821 180 0 0 chr11 7903141 7903425 -140880047 - AluJo SINE Alu -28 284 1 220 239 0 0 chr11 7903798 7903844 -140879628 - L2 LINE L2 -215 3057 3012 333 307 122 22 chr11 7903934 7904204 -140879268 - L2 LINE L2 -970 2344 2048 1082 213 110 46 chr11 7904235 7904286 -140879186 + HAL1 LINE L1 1012 1058 -1449 2036 119 6 29 chr11 7904286 7904597 -140878875 + AluSx SINE Alu 1 304 -8 1082 213 110 46 chr11 7904597 7904962 -140878510 + HAL1 LINE L1 1058 1455 -1052 1917 127 26 39 chr11 7905731 7906038 -140877434 - AluJb SINE Alu -9 303 1 2270 84 3 39 chr11 7906624 7906933 -140876539 - AluSp SINE Alu -15 298 1 534 219 8 0 chr11 7907365 7907488 -140875984 + HAL1 LINE L1 1658 1781 -726 394 243 72 0 chr11 7907777 7907888 -140875584 - FRAM SINE Alu -1 165 47 387 0 0 0 chr11 7908112 7908155 -140875317 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 250 13 66 chr11 7908744 7908820 -140874652 - MER5B DNA MER1_type -78 100 29 689 229 78 69 chr11 7909063 7909385 -140874087 - MLT1I LTR MaLR 0 409 74 3027 153 86 29 chr11 7909438 7909820 -140873652 - L1MB5 LINE L1 0 6174 5742 2199 103 31 0 chr11 7909820 7910110 -140873362 + AluSx SINE Alu 1 299 -13 3027 153 86 29 chr11 7910110 7910341 -140873131 - L1MB5 LINE L1 -432 5742 5526 771 89 0 0 chr11 7910982 7911083 -140872389 + HY3 scRNA scRNA 1 101 0 2280 50 0 7 chr11 7911096 7911416 -140872056 + AluY SINE Alu 1 318 0 276 216 103 69 chr11 7911655 7911771 -140871701 + L2 LINE L2 2119 2238 -1076 * 644 292 65 0 chr11 7911737 7911922 -140871550 - MIR SINE MIR -7 255 59 228 283 62 53 chr11 7911927 7912040 -140871432 + L2 LINE L2 2579 2692 -622 712 282 183 6 chr11 7912163 7912496 -140870976 + L2 LINE L2 2920 3311 -2 1794 153 7 3 chr11 7914642 7914942 -140868530 - AluJb SINE Alu -11 301 1 2587 43 0 0 chr11 7916213 7916516 -140866956 + AluY SINE Alu 1 303 -8 2314 73 3 0 chr11 7916530 7916831 -140866641 + AluSp SINE Alu 1 302 -11 206 320 13 26 chr11 7917026 7917104 -140866368 + MIR SINE MIR 31 107 -155 2276 90 0 0 chr11 7917118 7917418 -140866054 + AluSq SINE Alu 1 300 -13 327 272 184 8 chr11 7919977 7920102 -140863370 - MIR3 SINE MIR -32 176 30 2463 62 3 0 chr11 7921524 7921831 -140861641 - AluY SINE Alu -3 308 1 379 297 189 0 chr11 7922573 7922721 -140860751 + MIR SINE MIR 68 243 -19 1847 131 25 32 chr11 7922798 7923112 -140860360 + AluJo SINE Alu 1 312 0 197 175 0 25 chr11 7923377 7923417 -140860055 - MIR SINE MIR -137 125 87 426 20 0 0 chr11 7923451 7923502 -140859970 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5621 66 44 44 chr11 7923502 7924558 -140858914 - SVA Other Other -551 1367 433 1863 145 7 0 chr11 7924717 7925013 -140858459 - AluJb SINE Alu -14 298 1 33 0 0 0 chr11 7926595 7926628 -140856844 + AT_rich Low_complexity Low_complexity 1 33 0 2212 99 0 3 chr11 7927502 7927806 -140855666 - AluSc SINE Alu -6 303 1 29 28 0 0 chr11 7928200 7928236 -140855236 + AT_rich Low_complexity Low_complexity 1 36 0 716 177 0 31 chr11 7928257 7928387 -140855085 - AluJo SINE Alu -176 136 11 376 270 54 0 chr11 7930130 7930241 -140853231 - MIR3 SINE MIR -33 175 59 471 127 56 7 chr11 7930757 7930899 -140852573 + (CA)n Simple_repeat Simple_repeat 1 149 0 2174 79 31 0 chr11 7931970 7932262 -140851210 - AluSx SINE Alu -11 301 1 233 353 49 11 chr11 7932670 7932854 -140850618 + L2 LINE L2 2864 3054 -218 305 175 193 9 chr11 7932952 7933066 -140850406 - Charlie2 DNA MER1_type -32 2830 2696 1702 170 7 0 chr11 7933072 7933360 -140850112 + AluJb SINE Alu 1 290 -22 1251 193 161 85 chr11 7933378 7933675 -140849797 - Charlie2 DNA MER1_type -145 2717 2444 1748 170 0 22 chr11 7933675 7933992 -140849480 - AluJo SINE Alu 0 312 3 1251 193 161 85 chr11 7933992 7934496 -140848976 - Charlie2 DNA MER1_type -418 2444 1855 673 269 97 4 chr11 7934486 7934713 -140848759 - Charlie2 DNA MER1_type -2452 330 83 * 260 234 16 0 chr11 7934811 7934875 -140848597 + L1MC/D LINE L1 5712 5776 -2032 21 36 0 0 chr11 7937322 7937350 -140846122 + AT_rich Low_complexity Low_complexity 1 28 0 313 194 90 52 chr11 7937444 7937599 -140845873 + L1MC5 LINE L1 7603 7763 -198 187 345 18 0 chr11 7937769 7937824 -140845648 - MIR SINE MIR -6 256 201 847 191 39 17 chr11 7937890 7938068 -140845404 - Charlie4 DNA MER1_type -1763 198 17 282 282 26 0 chr11 7938080 7938158 -140845314 - L2 LINE L2 -7 3306 3227 2104 113 7 0 chr11 7938163 7938465 -140845007 + AluSx SINE Alu 1 304 -8 2094 126 3 0 chr11 7938493 7938795 -140844677 + AluSx SINE Alu 1 303 -9 1827 146 0 0 chr11 7938804 7939084 -140844388 + AluJb SINE Alu 1 280 -32 2446 109 73 5 chr11 7939267 7939662 -140843810 + L1M2 LINE L1 5254 5675 -616 310 146 0 0 chr11 7939763 7939811 -140843661 + FRAM SINE Alu 72 119 -47 2084 132 3 0 chr11 7940530 7940841 -140842631 - AluSx SINE Alu 0 312 1 2306 66 0 10 chr11 7941081 7941384 -140842088 - AluSx SINE Alu -12 300 1 309 348 49 54 chr11 7943396 7943580 -140839892 - L2 LINE L2 -8 3264 3082 310 221 47 35 chr11 7945711 7945797 -140837675 + MIR3 SINE MIR 70 156 -52 2073 52 0 94 chr11 7945845 7946173 -140837299 - AluY SINE Alu -14 297 1 896 130 139 9 chr11 7946726 7946949 -140836523 + MER33 DNA MER1_type 25 276 -48 188 288 34 0 chr11 7947117 7947176 -140836296 + L3 LINE CR1 955 1015 -562 233 189 19 57 chr11 7947359 7947412 -140836060 + L2 LINE L2 3185 3235 -78 1954 94 0 0 chr11 7948540 7948795 -140834677 + AluSq SINE Alu 1 255 -58 2185 93 3 10 chr11 7948795 7949107 -140834365 + AluSq SINE Alu 3 312 -1 695 256 94 33 chr11 7949169 7949529 -140833943 - HAL1 LINE L1 0 2507 2126 561 256 67 50 chr11 7949562 7949800 -140833672 - HAL1 LINE L1 -443 2064 1823 281 215 156 15 chr11 7949791 7949926 -140833546 - HAL1 LINE L1 -1303 1204 1051 * 30 27 0 0 chr11 7949935 7949972 -140833500 + AT_rich Low_complexity Low_complexity 1 37 0 1969 149 88 24 chr11 7949974 7950383 -140833089 - L1MA7 LINE L1 -1 6290 5856 542 236 177 23 chr11 7950410 7950630 -140832842 - HAL1 LINE L1 -1469 1038 785 1882 94 67 0 chr11 7950642 7950909 -140832563 + AluSx SINE Alu 11 295 -17 433 220 84 96 chr11 7950953 7951203 -140832269 - MER112 DNA MER1_type -6 254 8 2068 89 61 3 chr11 7951281 7951574 -140831898 + AluSg SINE Alu 1 310 0 458 214 262 19 chr11 7951644 7951953 -140831519 - L2 LINE L2 0 3313 1304 718 228 72 2 chr11 7951960 7952233 -140831239 + MER58B DNA MER1_type 8 341 0 1673 256 188 11 chr11 7952233 7952851 -140830621 - L2 LINE L2 -2003 1311 585 323 300 67 25 chr11 7953269 7953389 -140830083 + L2 LINE L2 3137 3261 -11 1788 153 8 67 chr11 7953598 7953957 -140829515 + LTR64 LTR ERVK 1 338 -220 2229 88 3 0 chr11 7954133 7954438 -140829034 - AluY SINE Alu -5 306 1 502 286 134 52 chr11 7954545 7954698 -140828774 - MLT1K LTR MaLR -3 585 446 571 207 83 0 chr11 7954698 7954819 -140828653 + FLAM_A SINE Alu 1 131 -2 502 286 134 52 chr11 7954819 7955112 -140828360 - MLT1K LTR MaLR -142 446 102 1933 119 6 41 chr11 7956936 7957076 -140826396 + AluSx SINE Alu 1 144 -168 2092 98 0 14 chr11 7957076 7957372 -140826100 + AluSg1 SINE Alu 1 292 -17 1933 119 6 41 chr11 7957372 7957551 -140825921 + AluSx SINE Alu 144 309 -3 730 142 7 71 chr11 7957875 7958016 -140825456 + MER52A LTR ERV1 554 685 -1070 2320 80 3 0 chr11 7958314 7958616 -140824856 - AluSc SINE Alu -6 303 1 1807 152 3 3 chr11 7958626 7958915 -140824557 - AluSx SINE Alu -12 300 12 2283 177 66 2 chr11 7959543 7959962 -140823510 - MLT1C LTR MaLR 0 467 22 1459 151 84 0 chr11 7959962 7960200 -140823272 + AluJo SINE Alu 1 258 -54 2035 145 7 0 chr11 7960555 7960852 -140822620 + AluSq SINE Alu 1 299 -14 971 102 58 0 chr11 7962450 7962587 -140820885 + AluJb SINE Alu 168 312 0 29 0 0 0 chr11 8012884 8012913 -140770559 + GC_rich Low_complexity Low_complexity 1 29 0 26 114 0 0 chr11 8013330 8013461 -140770011 + GC_rich Low_complexity Low_complexity 1 131 0 317 271 55 64 chr11 8014544 8014762 -140768710 + L1 LINE L1 3130 3345 -2801 241 106 0 85 chr11 8014821 8014868 -140768604 + tRNA-Ile-ATT tRNA tRNA 7 49 -28 2367 87 0 0 chr11 8014921 8015230 -140768242 - AluSg SINE Alu -1 309 1 348 227 10 41 chr11 8015390 8015487 -140767985 - MIR SINE MIR -102 160 67 226 383 12 0 chr11 8015577 8015658 -140767814 - L2 LINE L2 -87 3185 3104 586 283 69 43 chr11 8015752 8015985 -140767487 - L2 LINE L2 0 3313 3075 336 288 45 20 chr11 8016003 8016201 -140767271 - AluSp SINE Alu 0 303 101 23 0 0 0 chr11 8016286 8016309 -140767163 + GC_rich Low_complexity Low_complexity 1 23 0 1209 101 43 14 chr11 8016690 8016897 -140766575 - AluSp SINE Alu -100 213 1 427 189 42 32 chr11 8017301 8017396 -140766076 + MER21B LTR ERV1 1 96 -767 2193 101 0 0 chr11 8017478 8017774 -140765698 - AluSx SINE Alu -16 296 1 21 0 0 0 chr11 8018118 8018139 -140765333 + AT_rich Low_complexity Low_complexity 1 21 0 423 98 114 167 chr11 8018239 8018282 -140765190 - MER4D LTR ERV1 -639 264 220 1637 150 24 3 chr11 8018282 8018576 -140764896 - AluJb SINE Alu -12 300 1 423 98 114 167 chr11 8018576 8018664 -140764808 - MER4D LTR ERV1 -683 220 140 264 229 0 0 chr11 8018644 8018692 -140764780 + MER4D LTR ERV1 97 144 -759 * 1190 178 4 17 chr11 8018702 8018933 -140764539 + AluJb SINE Alu 41 268 -44 658 176 61 8 chr11 8018934 8019065 -140764407 - MER49 LTR ERV1 -785 138 1 2166 60 35 3 chr11 8019249 8019532 -140763940 + AluY SINE Alu 1 292 -19 1905 123 0 7 chr11 8019636 8019921 -140763551 - AluSx SINE Alu -15 297 15 822 189 6 0 chr11 8019927 8020086 -140763386 + AluJb SINE Alu 146 305 -7 2282 96 3 0 chr11 8020088 8020400 -140763072 + AluSp SINE Alu 1 313 0 576 197 118 8 chr11 8020409 8020536 -140762936 - MLT1A1 LTR MaLR -224 141 1 2422 169 11 20 chr11 8020619 8020857 -140762615 - Tigger2a DNA MER2_type -2274 434 200 2123 109 0 0 chr11 8020857 8021151 -140762321 - AluSg SINE Alu -16 294 1 2422 169 11 20 chr11 8021151 8021350 -140762122 - Tigger2a DNA MER2_type -2508 200 1 1988 108 3 3 chr11 8021512 8021800 -140761672 - AluSx SINE Alu -12 300 13 3620 181 33 41 chr11 8021904 8022206 -140761266 + LTR39 LTR ERV1 1 304 -479 2080 110 0 7 chr11 8022206 8022507 -140760965 + AluSc SINE Alu 1 299 -10 3620 181 33 41 chr11 8022507 8022824 -140760648 + LTR39 LTR ERV1 304 615 -168 2452 40 3 3 chr11 8022824 8023123 -140760349 + AluY SINE Alu 1 299 -12 3620 181 33 41 chr11 8023123 8023291 -140760181 + LTR39 LTR ERV1 615 783 0 531 221 82 0 chr11 8023441 8023563 -140759909 - MER4D LTR ERV1 -8 895 764 1438 143 44 8 chr11 8023576 8023827 -140759645 - MER4D LTR ERV1 -385 518 259 2184 103 0 0 chr11 8023974 8024274 -140759198 - AluSx SINE Alu -10 302 3 2488 131 144 51 chr11 8024299 8024528 -140758944 + MLT2B1 LTR ERVL 4 210 -310 2228 104 13 0 chr11 8024528 8024836 -140758636 - AluSx SINE Alu 0 312 1 2488 131 144 51 chr11 8024836 8025079 -140758393 + MLT2B1 LTR ERVL 210 520 0 357 344 114 30 chr11 8025079 8025209 -140758263 - L1MC4a LINE L1 -1649 6159 6041 2007 100 48 0 chr11 8025209 8025499 -140757973 - AluSg SINE Alu -3 307 4 357 344 114 30 chr11 8025499 8025630 -140757842 - L1MC4a LINE L1 -1767 6041 5876 370 240 10 10 chr11 8025635 8025735 -140757737 - L1MC4a LINE L1 -1984 5824 5725 216 0 0 0 chr11 8025735 8025759 -140757713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2015 81 26 0 chr11 8025766 8026038 -140757434 - AluSg SINE Alu -31 279 1 219 178 20 69 chr11 8026660 8026761 -140756711 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 396 297 73 50 chr11 8027053 8027356 -140756116 - L3 LINE CR1 -458 1119 810 1760 149 7 10 chr11 8027524 8027813 -140755659 + AluSx SINE Alu 1 288 -24 1640 171 18 0 chr11 8027848 8028129 -140755343 + AluJo SINE Alu 1 286 -26 351 65 0 0 chr11 8028129 8028175 -140755297 + (CAT)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr11 8028543 8028566 -140754906 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 109 3 0 chr11 8028932 8029257 -140754215 + AluSp SINE Alu 1 326 0 743 150 39 8 chr11 8029722 8029849 -140753623 + FLAM_C SINE Alu 1 131 -2 2040 91 10 29 chr11 8029870 8030178 -140753294 + AluSg SINE Alu 1 302 -8 538 248 26 0 chr11 8030180 8030293 -140753179 + MER21B LTR ERV1 18 133 -730 2402 201 34 45 chr11 8030331 8030512 -140752960 + MER21B LTR ERV1 136 317 -546 1717 109 113 8 chr11 8030512 8030778 -140752694 + AluSg SINE Alu 1 294 -16 2402 201 34 45 chr11 8030778 8031256 -140752216 + MER21B LTR ERV1 317 755 -108 255 150 25 0 chr11 8031258 8031298 -140752174 - Alu SINE Alu -267 41 1 874 182 96 0 chr11 8031385 8031572 -140751900 + MER39 LTR ERV1 1 205 -502 2080 265 77 34 chr11 8032442 8032790 -140750682 + L1MC4a LINE L1 5255 5587 -2221 2257 88 3 0 chr11 8032790 8033084 -140750388 + AluSx SINE Alu 1 295 -17 2080 265 77 34 chr11 8033084 8033559 -140749913 + L1MC4a LINE L1 5587 6113 -1695 216 67 0 0 chr11 8033591 8033621 -140749851 + (GGA)n Simple_repeat Simple_repeat 2 31 0 351 0 0 0 chr11 8033943 8033982 -140749490 + (CA)n Simple_repeat Simple_repeat 1 39 0 2104 107 0 0 chr11 8034038 8034329 -140749143 + AluSg SINE Alu 1 291 -19 203 122 0 49 chr11 8034540 8034581 -140748891 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2193 109 64 19 chr11 8034588 8034947 -140748525 + THE1C LTR MaLR 1 375 0 271 146 0 0 chr11 8035077 8035125 -140748347 + L1ME4a LINE L1 6073 6120 -1 1358 156 28 86 chr11 8035125 8035451 -140748021 + AluJo SINE Alu 1 307 -5 665 278 45 31 chr11 8035471 8035694 -140747778 + MIR SINE MIR 23 248 -14 237 299 104 0 chr11 8036176 8036243 -140747229 + MIR SINE MIR 40 113 -149 265 345 58 0 chr11 8036393 8036480 -140746992 - LTR67 LTR ERVL -367 190 99 345 338 88 44 chr11 8036758 8037054 -140746418 + MLT1K LTR MaLR 122 430 -158 531 296 11 49 chr11 8037137 8037404 -140746068 + L1MEd LINE L1 1001 1257 -4862 4152 166 67 44 chr11 8037529 8037551 -140745921 - L1M4 LINE L1 -998 5148 5128 1301 171 114 11 chr11 8037551 8037831 -140745641 - AluJo SINE Alu -3 309 1 4152 166 67 44 chr11 8037831 8038645 -140744827 - L1M4 LINE L1 -1018 5128 4283 612 254 0 0 chr11 8038645 8038786 -140744686 - FLAM_A SINE Alu 0 141 1 4152 166 67 44 chr11 8038786 8038940 -140744532 - L1M4 LINE L1 -1863 4283 4134 186 300 117 50 chr11 8039003 8039123 -140744349 - MIR SINE MIR -63 145 18 298 341 225 0 chr11 8040202 8040504 -140742968 + L2 LINE L2 2459 2828 -486 753 320 119 0 chr11 8040507 8040785 -140742687 - HERV16 LTR ERVL -2146 2850 2540 1429 320 79 9 chr11 8040785 8041356 -140742116 + ERVL LTR ERVL 2895 3505 -2259 3103 296 67 48 chr11 8041358 8043025 -140740447 + ERVL LTR ERVL 3357 5383 -381 905 281 139 19 chr11 8043189 8043563 -140739909 + LTR16B LTR ERVL 44 462 -2 1597 101 9 4 chr11 8043617 8043845 -140739627 + AluSc SINE Alu 1 229 -80 1966 125 10 3 chr11 8043880 8044168 -140739304 + AluJb SINE Alu 1 290 -22 1292 67 0 22 chr11 8044505 8044685 -140738787 + AluY SINE Alu 118 293 -18 219 121 0 0 chr11 8044754 8044787 -140738685 + MIR SINE MIR 190 222 -40 * 610 207 67 7 chr11 8044772 8044922 -140738550 + L2 LINE L2 2671 2829 -485 522 297 71 65 chr11 8044952 8045262 -140738210 - MLT1I LTR MaLR -27 382 71 381 223 204 0 chr11 8045345 8045502 -140737970 + L2 LINE L2 2839 3027 -286 263 266 219 41 chr11 8045517 8045686 -140737786 - MIR SINE MIR -12 250 52 1975 104 11 0 chr11 8045695 8045973 -140737499 + AluSx SINE Alu 17 297 -15 1990 103 10 13 chr11 8045984 8046296 -140737176 + AluY SINE Alu 1 311 0 1376 61 17 0 chr11 8046296 8046477 -140736995 + AluSg/x SINE Alu 129 312 0 193 311 97 19 chr11 8046746 8046849 -140736623 + L2 LINE L2 2656 2766 -548 607 174 22 58 chr11 8046896 8047034 -140736438 - AluJo SINE Alu -178 134 2 323 310 71 56 chr11 8047159 8047356 -140736116 + L2 LINE L2 2890 3089 -183 1911 116 34 0 chr11 8047362 8047654 -140735818 - AluSc SINE Alu -6 303 2 270 0 0 0 chr11 8047655 8047685 -140735787 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1789 153 4 0 chr11 8047685 8047966 -140735506 - AluSx SINE Alu -30 282 1 1971 101 14 3 chr11 8048336 8048623 -140734849 + AluSq SINE Alu 5 294 -19 436 273 232 0 chr11 8048628 8048826 -140734646 - MIR SINE MIR -10 252 9 393 240 51 52 chr11 8049090 8049247 -140734225 + MIR3 SINE MIR 1 159 -61 2574 231 67 87 chr11 8049690 8049940 -140733532 + L1ME3A LINE L1 4585 4838 -1332 2131 128 0 0 chr11 8049940 8050244 -140733228 - AluSx SINE Alu -8 304 1 2574 231 67 87 chr11 8050244 8051268 -140732204 + L1ME3A LINE L1 4838 5881 -289 1735 139 52 14 chr11 8051268 8051555 -140731917 + AluJb SINE Alu 1 298 -14 2574 231 67 87 chr11 8051555 8051664 -140731808 + L1ME3A LINE L1 5881 5991 -179 988 161 15 65 chr11 8051664 8051740 -140731732 + MER5A DNA MER1_type 1 79 -110 2130 112 7 3 chr11 8051740 8052045 -140731427 + AluSg SINE Alu 1 306 -4 988 161 15 65 chr11 8052045 8052167 -140731305 + MER5A DNA MER1_type 79 189 0 2574 231 67 87 chr11 8052167 8052406 -140731066 + L1ME3A LINE L1 5991 6169 -1 517 238 82 41 chr11 8052400 8052644 -140730828 + HAL1 LINE L1 1092 1345 -1162 * 722 114 19 0 chr11 8052645 8052750 -140730722 - AluSp SINE Alu -205 108 2 500 236 103 10 chr11 8052925 8053128 -140730344 + L1ME4a LINE L1 5841 6062 -59 620 241 161 6 chr11 8054264 8054438 -140729034 + MIR SINE MIR 61 261 -1 4519 139 31 62 chr11 8054803 8055076 -140728396 + L1M1 LINE L1 4442 4722 -1581 1799 161 0 16 chr11 8055076 8055380 -140728092 + AluJb SINE Alu 1 299 -13 4519 139 31 62 chr11 8055380 8056110 -140727362 + L1M1 LINE L1 4722 5387 -916 461 63 0 0 chr11 8056110 8056173 -140727299 + L1PA6 LINE L1 6090 6152 -2 4519 139 31 62 chr11 8056173 8056425 -140727047 + L1M1 LINE L1 5387 5645 -658 765 134 164 0 chr11 8056426 8056560 -140726912 + MLT1A2 LTR MaLR 219 374 0 384 239 103 49 chr11 8056561 8056745 -140726727 + MARNA DNA Mariner 319 512 -74 1158 106 0 0 chr11 8057405 8057566 -140725906 + AluSg/x SINE Alu 133 293 -17 421 232 29 31 chr11 8057676 8057838 -140725634 - MLT2E LTR ERVL -87 576 201 500 216 0 0 chr11 8058208 8058296 -140725176 - MER81 DNA DNA 0 114 27 4083 177 99 17 chr11 8058379 8058420 -140725052 - L1MB7 LINE L1 0 6184 6148 2044 116 0 0 chr11 8058420 8058728 -140724744 + AluSx SINE Alu 1 308 0 4083 177 99 17 chr11 8058728 8059683 -140723789 - L1MB7 LINE L1 -36 6148 5106 4452 155 44 4 chr11 8059703 8060887 -140722585 + L1PB1 LINE L1 4852 6148 -3 250 224 294 0 chr11 8060995 8061080 -140722392 + L2 LINE L2 3203 3312 -1 525 258 155 7 chr11 8061723 8061878 -140721594 - MER5B DNA MER1_type 0 178 1 1433 222 28 25 chr11 8064116 8064472 -140719000 + L1MC4a LINE L1 5598 5954 -1854 3063 186 35 47 chr11 8064487 8064957 -140718515 + L1MB7 LINE L1 4616 5090 -1094 1557 153 22 7 chr11 8064957 8065232 -140718240 + AluJo SINE Alu 34 312 0 3063 186 35 47 chr11 8065232 8065749 -140717723 + L1MB7 LINE L1 5090 5587 -597 3034 176 12 40 chr11 8065768 8066111 -140717361 - L1MB3 LINE L1 -56 6127 5776 658 154 0 19 chr11 8066111 8066246 -140717226 + FLAM_A SINE Alu 20 142 0 3034 176 12 40 chr11 8066246 8066959 -140716513 - L1MB3 LINE L1 -407 5776 5084 2732 191 33 5 chr11 8066963 8067543 -140715929 + L1MB7 LINE L1 5580 6175 -9 5649 192 87 69 chr11 8067562 8068110 -140715362 + L1MC4a LINE L1 5938 6475 -1333 2166 70 46 0 chr11 8068110 8068394 -140715078 - AluSg SINE Alu -13 297 1 5649 192 87 69 chr11 8068394 8069307 -140714165 + L1MC4a LINE L1 6475 7440 -368 1464 151 78 4 chr11 8069307 8069459 -140714013 - AluJo SINE Alu -21 291 152 216 0 0 0 chr11 8069459 8069483 -140713989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1464 151 78 4 chr11 8069483 8069601 -140713871 - AluJo SINE Alu -160 152 1 5649 192 87 69 chr11 8069601 8069977 -140713495 + L1MC4a LINE L1 7440 7808 0 2208 99 0 6 chr11 8069999 8070311 -140713161 + AluY SINE Alu 1 310 -1 1855 133 3 14 chr11 8070382 8070676 -140712796 - AluJo SINE Alu -9 303 13 2409 82 0 0 chr11 8071125 8071428 -140712044 + AluSx SINE Alu 1 303 -9 243 286 67 0 chr11 8071526 8071645 -140711827 + HAL1b LINE L1 1222 1348 0 195 42 0 0 chr11 8072080 8072104 -140711368 + (GA)n Simple_repeat Simple_repeat 2 25 0 244 219 31 78 chr11 8072558 8072622 -140710850 - L2 LINE L2 -2 3311 3251 1967 101 0 44 chr11 8072763 8073061 -140710411 + AluSq SINE Alu 5 289 -24 328 267 106 37 chr11 8073408 8073569 -140709903 + MIR3 SINE MIR 28 199 -9 382 300 124 26 chr11 8074416 8074831 -140708641 + L2 LINE L2 2795 3250 -22 1397 102 40 31 chr11 8074922 8075148 -140708324 - MER30 DNA MER1_type 0 230 3 1360 190 34 24 chr11 8076227 8076383 -140707089 - AluJb SINE Alu -14 298 145 219 103 0 0 chr11 8076383 8076422 -140707050 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2207 80 3 7 chr11 8076422 8076709 -140706763 - AluSq SINE Alu -27 286 1 1360 190 34 24 chr11 8076709 8076846 -140706626 - AluJb SINE Alu -166 146 1 33 0 0 0 chr11 8076888 8076921 -140706551 + AT_rich Low_complexity Low_complexity 1 33 0 217 299 75 0 chr11 8077435 8077502 -140705970 + MIR SINE MIR 41 112 -96 245 215 154 0 chr11 8077581 8077646 -140705826 + MIR3 SINE MIR 131 205 -3 2246 96 3 3 chr11 8077711 8078024 -140705448 + AluSq SINE Alu 1 313 0 2301 80 0 0 chr11 8078567 8078869 -140704603 + AluY SINE Alu 1 302 -9 2180 90 7 3 chr11 8078877 8079177 -140704295 + AluSc SINE Alu 1 301 -8 1997 128 10 0 chr11 8079226 8079524 -140703948 + AluSx SINE Alu 1 301 -11 1559 183 0 10 chr11 8079712 8080012 -140703460 - AluJo SINE Alu -15 297 1 650 203 24 8 chr11 8080341 8080464 -140703008 + FLAM_C SINE Alu 2 126 -7 1420 175 144 0 chr11 8080481 8080738 -140702734 + AluJb SINE Alu 2 295 -7 2357 73 7 0 chr11 8080739 8081039 -140702433 + AluSp SINE Alu 5 306 -7 645 178 6 118 chr11 8081039 8081208 -140702264 + AluJo/FRAM SINE Alu 137 286 -16 2039 119 0 0 chr11 8081650 8081936 -140701536 + AluSg SINE Alu 1 286 -24 215 31 31 0 chr11 8081940 8081972 -140701500 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 867 155 83 28 chr11 8081986 8082167 -140701305 + L1MB8 LINE L1 5415 5605 -579 815 138 36 7 chr11 8082169 8082307 -140701165 + AluJb SINE Alu 2 143 -169 1989 120 3 13 chr11 8082307 8082446 -140701026 + AluSq SINE Alu 1 140 -173 2091 110 0 3 chr11 8082446 8082737 -140700735 + AluSg SINE Alu 6 295 -15 1989 120 3 13 chr11 8082737 8082898 -140700574 + AluSq SINE Alu 140 298 -15 2511 194 54 42 chr11 8082899 8083037 -140700435 + L1MB8 LINE L1 5598 5733 -445 2254 102 7 0 chr11 8083037 8083341 -140700131 + AluSq SINE Alu 1 306 -7 2511 194 54 42 chr11 8083341 8083879 -140699593 + L1MB8 LINE L1 5733 6132 -46 1771 113 84 0 chr11 8083879 8084153 -140699319 - AluSg SINE Alu -13 297 1 2511 194 54 42 chr11 8084153 8084195 -140699277 + L1MB8 LINE L1 6132 6172 -6 703 107 0 19 chr11 8084207 8084310 -140699162 + AluJb SINE Alu 202 302 -10 2358 66 0 3 chr11 8084337 8084639 -140698833 - AluY SINE Alu -10 301 1 2178 117 0 0 chr11 8084652 8084950 -140698522 - AluSx SINE Alu -14 298 1 3209 77 9 14 chr11 8084979 8085419 -140698053 - L1PA7 LINE L1 0 6154 5717 357 222 111 0 chr11 8085619 8085709 -140697763 + MIR3 SINE MIR 102 201 -7 607 191 7 95 chr11 8085801 8085836 -140697636 - AluJo SINE Alu -176 136 99 2192 95 3 0 chr11 8085836 8086132 -140697340 + AluSq SINE Alu 1 297 -16 2089 69 0 31 chr11 8086134 8086457 -140697015 + AluY SINE Alu 1 314 0 607 191 7 95 chr11 8086457 8086564 -140696908 - AluJo SINE Alu -214 98 3 1970 141 3 0 chr11 8086604 8086908 -140696564 + AluSx SINE Alu 1 305 -7 1716 174 0 28 chr11 8087679 8088000 -140695472 - AluJo SINE Alu 0 312 1 1999 117 10 10 chr11 8088347 8088646 -140694826 + AluSx SINE Alu 3 301 -11 272 263 90 43 chr11 8088989 8089121 -140694351 - MIR SINE MIR -42 166 35 2317 30 3 30 chr11 8089590 8089891 -140693581 - AluY SINE Alu -18 293 1 795 132 47 0 chr11 8089900 8090029 -140693443 - AluJb SINE Alu -176 136 2 2215 86 3 0 chr11 8090156 8090447 -140693025 - AluSp SINE Alu -21 292 1 711 287 28 64 chr11 8090447 8090739 -140692733 - L2 LINE L2 -232 3081 2801 950 184 50 6 chr11 8090739 8090918 -140692554 + MER5A DNA MER1_type 1 187 -2 711 287 28 64 chr11 8090918 8090950 -140692522 - L2 LINE L2 -512 2801 2769 1626 177 0 0 chr11 8091453 8091752 -140691720 - AluJb SINE Alu -13 299 1 1991 99 48 7 chr11 8091760 8092054 -140691418 - AluSq SINE Alu -7 306 1 1436 138 0 0 chr11 8092418 8092548 -140690924 + AluJo SINE Alu 1 133 -179 1772 166 17 0 chr11 8092548 8092844 -140690628 + AluJo SINE Alu 1 301 -11 1436 138 0 0 chr11 8092844 8092931 -140690541 + AluJo SINE Alu 132 218 -94 216 0 0 0 chr11 8092966 8092990 -140690482 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2164 110 0 3 chr11 8093048 8093357 -140690115 + AluSq SINE Alu 1 308 -5 2059 80 28 0 chr11 8093466 8093752 -140689720 + AluY SINE Alu 1 294 -17 266 206 0 98 chr11 8093753 8093855 -140689617 - L1ME3 LINE L1 -16 6146 6055 337 200 143 19 chr11 8093867 8093972 -140689500 - L1ME3 LINE L1 -151 5970 5853 563 285 65 40 chr11 8094194 8094287 -140689185 - L1ME3 LINE L1 -747 5399 5310 1965 107 14 7 chr11 8094287 8094576 -140688896 - AluSx SINE Alu -21 291 1 563 285 65 40 chr11 8094576 8094745 -140688727 - L1ME3 LINE L1 -836 5310 5417 1985 101 3 17 chr11 8094745 8095042 -140688430 - AluSq SINE Alu -20 293 1 563 285 65 40 chr11 8095042 8095248 -140688224 - L1ME3 LINE L1 -728 5418 5219 21 0 0 0 chr11 8095324 8095345 -140688127 + AT_rich Low_complexity Low_complexity 1 21 0 208 241 19 0 chr11 8095380 8095434 -140688038 + CT-rich Low_complexity Low_complexity 4 58 0 723 163 0 8 chr11 8095434 8095557 -140687915 - FLAM_A SINE Alu 0 142 21 2105 127 3 0 chr11 8095619 8095926 -140687546 - AluSq SINE Alu -4 309 2 1722 142 62 0 chr11 8095930 8096218 -140687254 - AluJb SINE Alu -6 306 1 2973 164 30 87 chr11 8096218 8096496 -140686976 - L1MB5 LINE L1 -41 6133 5841 2209 109 3 0 chr11 8096496 8096800 -140686672 - AluSx SINE Alu -7 305 1 2973 164 30 87 chr11 8096800 8097160 -140686312 - L1MB5 LINE L1 -333 5841 5534 3522 125 2 4 chr11 8097160 8097672 -140685800 - MER9 LTR ERVK 0 511 1 2973 164 30 87 chr11 8097672 8097722 -140685750 - L1MB5 LINE L1 -640 5534 5483 2263 84 0 3 chr11 8097983 8098281 -140685191 - AluSx SINE Alu -15 297 1 1399 234 77 36 chr11 8098281 8098725 -140684747 - MLT1C LTR MaLR 0 467 6 2255 99 0 0 chr11 8098755 8099058 -140684414 - AluSg SINE Alu -7 303 1 2605 230 61 20 chr11 8099096 8100080 -140683392 - L1ME3A LINE L1 -161 6009 4983 2330 74 3 0 chr11 8100444 8100743 -140682729 - AluSp SINE Alu -13 300 1 464 245 0 110 chr11 8101054 8101168 -140682304 - MIR SINE MIR -6 256 162 1513 171 40 3 chr11 8101168 8101466 -140682006 - AluJb SINE Alu -3 309 1 464 245 0 110 chr11 8101466 8101506 -140681966 - MIR SINE MIR -100 162 119 2174 127 97 76 chr11 8101539 8101639 -140681833 - MER39 LTR ERV1 -1 706 610 1667 169 19 7 chr11 8101639 8101946 -140681526 + AluJo SINE Alu 1 311 -1 2174 127 97 76 chr11 8101946 8101968 -140681504 - MER39 LTR ERV1 -97 610 590 2394 58 6 16 chr11 8101968 8102281 -140681191 + AluY SINE Alu 1 310 -1 2174 127 97 76 chr11 8102281 8102683 -140680789 - MER39 LTR ERV1 -117 590 170 255 103 0 0 chr11 8102842 8102881 -140680591 + (CAG)n Simple_repeat Simple_repeat 3 41 0 31 26 0 0 chr11 8103022 8103060 -140680412 + GC_rich Low_complexity Low_complexity 1 38 0 259 293 0 0 chr11 8104064 8104122 -140679350 + (CA)n Simple_repeat Simple_repeat 2 59 0 187 293 104 67 chr11 8105425 8105753 -140677719 + L2 LINE L2 1935 2274 -1040 22 35 0 0 chr11 8107531 8107560 -140675912 + AT_rich Low_complexity Low_complexity 1 29 0 301 325 107 19 chr11 8107597 8107803 -140675669 + L2 LINE L2 2350 2573 -741 432 238 99 61 chr11 8107855 8108144 -140675328 + MLT1K LTR MaLR 41 358 -230 241 245 147 29 chr11 8108222 8108324 -140675148 + L2 LINE L2 2615 2728 -586 1821 228 43 83 chr11 8108356 8108695 -140674777 + L1ME3 LINE L1 5555 5906 -256 5115 96 38 12 chr11 8108695 8109454 -140674018 + LTR17 LTR ERV1 1 779 -1 1821 228 43 83 chr11 8109454 8109489 -140673983 + L1ME3 LINE L1 5906 5941 -221 1513 180 0 43 chr11 8109489 8109623 -140673849 + AluJo SINE Alu 12 150 -162 1898 141 0 10 chr11 8109623 8109928 -140673544 + AluSx SINE Alu 1 302 -10 1513 180 0 43 chr11 8109928 8110093 -140673379 + AluJo SINE Alu 150 298 -14 1821 228 43 83 chr11 8110093 8110343 -140673129 + L1ME3 LINE L1 5941 6155 -7 250 300 34 45 chr11 8110360 8110534 -140672938 + L2 LINE L2 2793 2963 -309 1964 112 4 0 chr11 8110683 8110814 -140672658 + AluSg SINE Alu 1 130 -185 216 0 0 0 chr11 8110814 8110838 -140672634 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1964 112 4 0 chr11 8110838 8111020 -140672452 + AluSg SINE Alu 130 315 0 251 242 148 66 chr11 8111175 8111357 -140672115 + MLT1L LTR MaLR 16 212 -403 * 298 277 122 27 chr11 8111326 8111474 -140671998 + MLT1K LTR MaLR 197 358 -230 235 232 14 14 chr11 8111519 8111588 -140671884 + MLT1L LTR MaLR 489 557 -58 4074 161 47 27 chr11 8111609 8111733 -140671739 - L1MB3 LINE L1 -2 6181 6061 2038 94 29 49 chr11 8111733 8112041 -140671431 - AluSx SINE Alu -10 302 1 4074 161 47 27 chr11 8112041 8112668 -140670804 - L1MB3 LINE L1 -122 6061 5415 21 0 0 0 chr11 8112784 8112805 -140670667 + AT_rich Low_complexity Low_complexity 1 21 0 394 265 66 73 chr11 8112909 8112938 -140670534 - L2 LINE L2 -4 3268 3240 642 300 107 0 chr11 8112938 8113171 -140670301 - MIR SINE MIR -1 261 4 394 265 66 73 chr11 8113171 8113277 -140670195 - L2 LINE L2 -32 3240 3134 6226 188 85 56 chr11 8113390 8113627 -140669845 - MER45R DNA AcHobo 0 1581 1352 1897 154 3 0 chr11 8113627 8113919 -140669553 + AluJo SINE Alu 1 293 -19 6226 188 85 56 chr11 8113919 8114615 -140668857 - MER45R DNA AcHobo -229 1352 584 1498 179 144 4 chr11 8114615 8114878 -140668594 + AluJo SINE Alu 1 300 -2 6226 188 85 56 chr11 8114878 8115477 -140667995 - MER45R DNA AcHobo -997 584 4 2162 101 39 0 chr11 8115516 8115802 -140667670 - AluSq SINE Alu -16 297 1 452 289 100 92 chr11 8115892 8116252 -140667220 + L2 LINE L2 2910 3272 0 2362 89 0 16 chr11 8116346 8116660 -140666812 + AluSc SINE Alu 1 309 0 1409 294 90 41 chr11 8116836 8118215 -140665257 + L1M4 LINE L1 3502 4948 -1198 433 258 70 48 chr11 8118482 8118711 -140664761 + L1MEc LINE L1 1397 1630 -4766 30 59 0 0 chr11 8118892 8118943 -140664529 + AT_rich Low_complexity Low_complexity 1 51 0 183 80 0 0 chr11 8118953 8118978 -140664494 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 189 0 0 0 chr11 8118977 8118998 -140664474 + (GA)n Simple_repeat Simple_repeat 2 22 0 359 376 59 0 chr11 8119001 8119203 -140664269 + L1MEc LINE L1 1918 2131 -4265 254 186 0 43 chr11 8119341 8119411 -140664061 + L1M4 LINE L1 3875 3941 -2205 1762 103 53 14 chr11 8119411 8119693 -140663779 + AluY SINE Alu 1 293 -18 13319 123 45 11 chr11 8120179 8122240 -140661232 - Tigger1 DNA MER2_type -287 2131 1 714 289 107 35 chr11 8122300 8122618 -140660854 + MLT1I LTR MaLR 69 409 0 532 253 42 57 chr11 8122639 8122696 -140660776 + L1M4 LINE L1 4316 4372 -1774 1658 153 37 48 chr11 8122696 8122991 -140660481 - AluJo SINE Alu -20 292 1 532 253 42 57 chr11 8122991 8123198 -140660274 + L1M4 LINE L1 4372 4576 -1570 259 268 8 55 chr11 8123281 8123408 -140660064 + C-rich Low_complexity Low_complexity 2 122 0 180 0 0 0 chr11 8123511 8123531 -140659941 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1240 103 0 29 chr11 8123610 8123785 -140659687 + AluSx SINE Alu 1 170 -142 2312 105 0 13 chr11 8123812 8124127 -140659345 - AluSx SINE Alu -1 311 1 957 182 0 16 chr11 8124163 8124350 -140659122 - AluJb SINE Alu -2 310 127 2166 116 0 3 chr11 8124372 8124666 -140658806 - AluSx SINE Alu -19 293 1 2246 102 3 0 chr11 8124698 8125010 -140658462 - AluSp SINE Alu 0 313 1 2425 199 59 109 chr11 8125562 8126236 -140657236 - HAL1 LINE L1 -634 1873 1167 2167 103 3 0 chr11 8126236 8126551 -140656921 - AluSq SINE Alu 0 316 1 1476 153 111 0 chr11 8126558 8126820 -140656652 - AluJb SINE Alu -21 291 1 2425 199 59 109 chr11 8126820 8126995 -140656477 - HAL1 LINE L1 -1346 1161 1063 1690 138 40 20 chr11 8126995 8127293 -140656179 - AluJo SINE Alu -8 304 1 2425 199 59 109 chr11 8127293 8127370 -140656102 - HAL1 LINE L1 -1444 1063 984 1763 187 76 22 chr11 8127502 8127739 -140655733 - L1MB8 LINE L1 0 6178 5955 180 0 0 0 chr11 8127739 8127759 -140655713 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2105 98 3 7 chr11 8127759 8128044 -140655428 - AluSq SINE Alu -29 284 1 1763 187 76 22 chr11 8128044 8128212 -140655260 - L1MB8 LINE L1 -222 5956 5750 1157 174 11 114 chr11 8128230 8128511 -140654961 - AluJo SINE Alu -19 293 42 568 196 116 0 chr11 8128529 8128641 -140654831 - FLAM_C SINE Alu -8 125 1 512 254 103 46 chr11 8128644 8128963 -140654509 - HAL1 LINE L1 -2137 370 2 473 317 18 18 chr11 8129007 8129171 -140654301 - MIR3 SINE MIR -9 199 36 2195 103 7 10 chr11 8129426 8129727 -140653745 + AluSx SINE Alu 1 300 -12 2106 128 0 10 chr11 8130253 8130557 -140652915 + AluSx SINE Alu 6 306 -6 1969 148 3 0 chr11 8131444 8131749 -140651723 - AluSx SINE Alu -6 306 1 1670 180 27 38 chr11 8131848 8131988 -140651484 - L1MD1 LINE L1 0 6242 6102 1457 163 17 21 chr11 8131988 8132276 -140651196 + AluSq SINE Alu 16 302 -11 1670 180 27 38 chr11 8132276 8132508 -140650964 - L1MD1 LINE L1 -140 6102 5874 1292 201 74 72 chr11 8132514 8133017 -140650455 - L1MDa LINE L1 -4561 1519 1016 802 171 0 29 chr11 8133035 8133175 -140650297 - AluJo SINE Alu -176 136 1 265 250 37 9 chr11 8133176 8133313 -140650159 - L1MDa LINE L1 -5064 1019 879 2184 101 13 7 chr11 8133328 8133626 -140649846 - AluSg SINE Alu -10 300 1 1533 238 146 33 chr11 8133635 8133834 -140649638 - L1MDa LINE L1 -5292 778 603 194 62 31 0 chr11 8133834 8133866 -140649606 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1533 238 146 33 chr11 8133866 8134267 -140649205 - L1MDa LINE L1 -5467 603 110 1381 177 90 7 chr11 8134459 8134736 -140648736 + AluJo SINE Alu 3 302 -10 2180 129 0 3 chr11 8135152 8135454 -140648018 - AluSx SINE Alu -11 301 1 274 139 0 23 chr11 8136003 8136046 -140647426 - 5S rRNA rRNA -79 42 1 593 204 38 81 chr11 8137396 8137607 -140645865 - MER112 DNA MER1_type -58 202 1 826 262 16 60 chr11 8139092 8139344 -140644128 - MIR SINE MIR -6 256 16 1628 178 0 24 chr11 8139374 8139667 -140643805 - AluJo SINE Alu -26 286 1 251 173 53 93 chr11 8139712 8139787 -140643685 - MIR SINE MIR -70 192 121 189 386 112 12 chr11 8140209 8140411 -140643061 + L2 LINE L2 2805 3036 -236 1894 140 14 0 chr11 8140411 8140697 -140642775 - AluSx SINE Alu -22 290 1 189 386 112 12 chr11 8140697 8140735 -140642737 + L2 LINE L2 3036 3069 -203 1223 263 94 4 chr11 8142173 8142662 -140640810 - L2 LINE L2 0 3313 2766 2483 179 137 62 chr11 8142706 8143466 -140640006 - L1MC4 LINE L1 0 8042 7226 282 225 14 0 chr11 8143510 8143581 -140639891 - L1MC4 LINE L1 -805 7237 7166 1779 151 37 0 chr11 8143581 8143879 -140639593 - AluJo SINE Alu -3 309 1 1151 178 0 53 chr11 8143885 8144110 -140639362 - AluJo SINE Alu -15 297 85 707 140 156 1 chr11 8144113 8144289 -140639183 - L1MC4 LINE L1 -715 7143 6882 443 228 53 0 chr11 8144294 8144408 -140639064 + L2 LINE L2 3194 3313 0 * 726 273 5 20 chr11 8144407 8144605 -140638867 - L2 LINE L2 -600 2714 2520 937 265 79 0 chr11 8144608 8144861 -140638611 - Charlie8 DNA MER1_type -2143 274 2 1860 170 3 3 chr11 8145773 8146062 -140637410 - AluJb SINE Alu -23 289 1 2113 103 52 0 chr11 8146199 8146489 -140636983 - AluSq SINE Alu -8 305 1 2320 97 7 0 chr11 8146645 8146945 -140636527 - AluSc SINE Alu -7 302 1 1944 156 3 0 chr11 8147575 8147864 -140635608 - AluSx SINE Alu -22 290 1 2305 80 3 0 chr11 8147965 8148251 -140635221 - AluSg SINE Alu -22 288 2 246 245 0 0 chr11 8148466 8148515 -140634957 - MIR SINE MIR -70 138 90 2338 92 3 7 chr11 8148617 8148921 -140634551 - AluSx SINE Alu -9 303 1 1432 152 32 95 chr11 8149107 8149284 -140634188 - AluJo SINE Alu -16 296 146 2006 116 0 40 chr11 8149284 8149585 -140633887 - AluSx SINE Alu -23 289 1 1432 152 32 95 chr11 8149585 8149723 -140633749 - AluJo SINE Alu -166 146 1 950 182 82 29 chr11 8150412 8150692 -140632780 + L1MC5 LINE L1 7589 7883 -78 2232 116 0 0 chr11 8150775 8151068 -140632404 + AluY SINE Alu 2 294 -17 1341 73 11 28 chr11 8151176 8151355 -140632117 - AluSx SINE Alu -136 176 1 1884 153 3 16 chr11 8152386 8152694 -140630778 - AluJo SINE Alu -8 304 1 23 0 0 0 chr11 8152769 8152792 -140630680 + AT_rich Low_complexity Low_complexity 1 23 0 2463 84 0 3 chr11 8152979 8153290 -140630182 - AluSg SINE Alu 0 310 1 2074 87 3 93 chr11 8154097 8154430 -140629042 + AluSx SINE Alu 1 303 -9 267 241 0 0 chr11 8154971 8155025 -140628447 - L1ME4a LINE L1 -95 6026 5973 2493 110 48 20 chr11 8155071 8155425 -140628047 - THE1B LTR MaLR 0 364 1 11706 88 8 27 chr11 8155430 8155801 -140627671 - THE1B-int LTR MaLR -6 1574 1197 2057 125 3 28 chr11 8155801 8156122 -140627350 + AluSp SINE Alu 1 313 0 11706 88 8 27 chr11 8156122 8157356 -140626116 - THE1B-int LTR MaLR -383 1197 1 2324 104 75 23 chr11 8157356 8157701 -140625771 - THE1B LTR MaLR 0 364 2 2217 114 3 10 chr11 8158637 8158945 -140624527 - AluSx SINE Alu -6 306 1 188 115 0 0 chr11 8159639 8159665 -140623807 + L2 LINE L2 3241 3266 -6 268 228 28 4 chr11 8159780 8160043 -140623429 + (CA)n Simple_repeat Simple_repeat 1 269 0 1176 64 0 7 chr11 8160069 8160210 -140623262 - L1PA7 LINE L1 -15 6139 6000 739 299 104 31 chr11 8160370 8160541 -140622931 + L1ME3A LINE L1 4981 5138 -1024 2138 106 3 7 chr11 8160541 8160834 -140622638 - AluSx SINE Alu -20 292 1 739 299 104 31 chr11 8160834 8161374 -140622098 + L1ME3A LINE L1 5138 5652 -510 2429 70 0 3 chr11 8161374 8161673 -140621799 - AluY SINE Alu -13 298 1 1155 114 0 0 chr11 8161681 8161839 -140621633 - AluSp SINE Alu -19 294 137 626 232 52 21 chr11 8161839 8162033 -140621439 + L1ME3A LINE L1 5740 5939 -231 1524 152 119 15 chr11 8162035 8162304 -140621168 + AluJo SINE Alu 1 297 -15 427 228 56 1 chr11 8162370 8162509 -140620963 - MIR SINE MIR 0 262 115 2777 146 30 32 chr11 8162680 8163187 -140620285 - L1MA5 LINE L1 -4 6296 5791 561 193 30 37 chr11 8163244 8163379 -140620093 + MIR SINE MIR 15 148 -114 2095 130 13 0 chr11 8163407 8163706 -140619766 - AluSx SINE Alu -9 303 1 272 410 17 11 chr11 8163784 8163962 -140619510 - MIR3 SINE MIR -17 191 13 1846 158 0 16 chr11 8163988 8164292 -140619180 - AluJb SINE Alu -13 299 1 513 283 40 31 chr11 8164299 8164522 -140618950 - MIR SINE MIR -10 252 28 1777 164 10 7 chr11 8165280 8165572 -140617900 - AluJo SINE Alu -19 293 1 371 326 21 7 chr11 8165597 8165743 -140617729 - MIR SINE MIR -67 141 34 2446 70 3 0 chr11 8165945 8166243 -140617229 + AluSp SINE Alu 1 299 -14 197 308 26 26 chr11 8167670 8167787 -140615685 + L2 LINE L2 2894 3010 -262 366 298 69 23 chr11 8167791 8168009 -140615463 - MLT1L LTR MaLR -2 613 386 1530 200 10 23 chr11 8168074 8168374 -140615098 - AluJo SINE Alu -16 296 1 1818 181 13 3 chr11 8168460 8168769 -140614703 - AluJo SINE Alu 0 312 1 274 287 69 18 chr11 8168781 8168996 -140614476 - MLT1L LTR MaLR -310 201 1 207 303 10 71 chr11 8169370 8169469 -140614003 + L2 LINE L2 3221 3313 0 3924 180 127 77 chr11 8169747 8171018 -140612454 - L1M4 LINE L1 -964 5182 3849 760 249 5 22 chr11 8171019 8171204 -140612268 - AluJo SINE Alu -11 301 120 3733 197 52 47 chr11 8171226 8171613 -140611859 - L1MEc LINE L1 -3887 2509 2126 2403 62 13 10 chr11 8171613 8171919 -140611553 - AluY SINE Alu -4 307 1 3733 197 52 47 chr11 8171919 8172088 -140611384 - L1MEc LINE L1 -4270 2126 1959 573 273 8 0 chr11 8172088 8172220 -140611252 + FLAM_A SINE Alu 1 133 0 3733 197 52 47 chr11 8172220 8172615 -140610857 - L1MEc LINE L1 -4437 1959 1552 1041 98 0 0 chr11 8172615 8172748 -140610724 + AluSq/x SINE Alu 1 133 -180 2360 116 8 25 chr11 8172850 8173203 -140610269 - THE1B LTR MaLR -17 347 1 1550 158 32 80 chr11 8173524 8173835 -140609637 - AluJb SINE Alu -16 296 1 219 69 0 0 chr11 8173836 8173865 -140609607 + (T)n Simple_repeat Simple_repeat 1 29 0 824 234 5 16 chr11 8174438 8174630 -140608842 + AluSc SINE Alu 114 303 -6 1935 130 76 25 chr11 8174658 8175012 -140608460 - THE1C LTR MaLR -3 372 1 1009 281 35 31 chr11 8175014 8175526 -140607946 - L1MEc LINE L1 -4856 1540 1027 2744 231 103 15 chr11 8175534 8175563 -140607909 - L1MEc LINE L1 -5553 843 818 1412 228 10 7 chr11 8175563 8175857 -140607615 - AluJo SINE Alu -13 299 5 2744 231 103 15 chr11 8175857 8176568 -140606904 - L1MEc LINE L1 -5578 818 38 312 70 0 0 chr11 8176607 8176650 -140606822 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr11 8177910 8177951 -140605521 + (TG)n Simple_repeat Simple_repeat 2 42 0 2125 128 3 7 chr11 8177969 8178275 -140605197 - AluSq SINE Alu -8 305 1 2040 113 7 3 chr11 8178831 8179114 -140604358 + AluSc SINE Alu 26 309 0 1834 168 21 0 chr11 8179449 8179735 -140603737 + AluJo SINE Alu 1 292 -20 2432 74 0 7 chr11 8179883 8180181 -140603291 + AluSg SINE Alu 1 296 -14 669 175 0 0 chr11 8180217 8180320 -140603152 - FLAM_A SINE Alu -20 122 20 223 167 0 0 chr11 8180464 8180500 -140602972 - L2 LINE L2 -12 3260 3225 1287 140 154 89 chr11 8180830 8181123 -140602349 + AluJb SINE Alu 1 312 0 21 36 0 0 chr11 8181384 8181412 -140602060 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 8181828 8181852 -140601620 + GC_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr11 8182298 8182335 -140601137 + (A)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr11 8182440 8182471 -140601001 + (A)n Simple_repeat Simple_repeat 1 31 0 282 178 47 122 chr11 8182566 8182673 -140600799 - HsTC2 DNA Tc2 -275 1623 1525 2201 122 3 7 chr11 8182705 8183008 -140600464 - AluSx SINE Alu -10 302 1 297 243 14 0 chr11 8183080 8183154 -140600318 - HsTC2 DNA Tc2 -1823 75 1 994 231 163 36 chr11 8183173 8183536 -140599936 + L1ME4a LINE L1 5494 5902 -268 1161 208 25 36 chr11 8183539 8183813 -140599659 + AluJb SINE Alu 15 285 -27 2556 68 3 3 chr11 8183990 8184298 -140599174 + AluSp SINE Alu 1 308 -5 291 211 53 72 chr11 8184329 8184481 -140598991 + L1ME4a LINE L1 5932 6080 -41 200 320 0 26 chr11 8184505 8184583 -140598889 + MIR SINE MIR 24 99 -109 24 0 0 0 chr11 8184583 8184607 -140598865 + AT_rich Low_complexity Low_complexity 1 24 0 420 209 115 22 chr11 8184721 8184860 -140598612 + MIR SINE MIR 111 262 0 2356 85 0 3 chr11 8185168 8185463 -140598009 - AluY SINE Alu -17 294 1 418 192 58 19 chr11 8186456 8186560 -140596912 - L2 LINE L2 -18 3295 3188 3930 136 47 44 chr11 8186653 8186911 -140596561 + L1MB7 LINE L1 5430 5686 -498 2367 102 10 0 chr11 8186911 8187216 -140596256 + AluSq SINE Alu 1 308 -5 3930 136 47 44 chr11 8187216 8187710 -140595762 + L1MB7 LINE L1 5686 6184 0 550 247 54 40 chr11 8187871 8188008 -140595464 + MIR SINE MIR 1 135 -127 221 73 0 24 chr11 8188008 8188049 -140595423 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1498 185 11 21 chr11 8188049 8188336 -140595136 - AluJb SINE Alu -28 284 1 550 247 54 40 chr11 8188336 8188420 -140595052 + MIR SINE MIR 134 226 -36 456 235 87 0 chr11 8188452 8188567 -140594905 - L1ME4a LINE L1 -293 5828 5704 228 317 119 20 chr11 8188619 8188720 -140594752 + MIR3 SINE MIR 6 116 -92 3453 126 4 0 chr11 8188768 8189270 -140594202 + L1PA15 LINE L1 5656 6159 -6 545 158 18 0 chr11 8189687 8189801 -140593671 + CT-rich Low_complexity Low_complexity 2 117 0 918 154 0 7 chr11 8189803 8189946 -140593526 - AluSc SINE Alu -36 273 132 1696 93 0 9 chr11 8189946 8190172 -140593300 - AluSg/x SINE Alu -4 308 85 258 241 35 0 chr11 8191350 8191408 -140592064 - L1ME4a LINE L1 -470 5651 5592 2078 133 3 0 chr11 8191437 8191730 -140591742 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 8191737 8191775 -140591697 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 8191909 8191939 -140591533 + AT_rich Low_complexity Low_complexity 1 30 0 664 302 21 25 chr11 8192228 8192470 -140591002 + MIR SINE MIR 4 244 -18 236 302 48 56 chr11 8192953 8193079 -140590393 - MIR SINE MIR -86 176 52 1853 121 15 95 chr11 8193224 8193562 -140589910 - AluSx SINE Alu -1 311 1 2244 109 20 0 chr11 8193572 8193876 -140589596 - AluSx SINE Alu -2 310 1 451 290 37 19 chr11 8194706 8194868 -140588604 - MIR3 SINE MIR -15 193 29 409 259 83 62 chr11 8195464 8195657 -140587815 + MIR SINE MIR 10 206 -56 199 337 146 7 chr11 8196776 8197070 -140586402 + L2 LINE L2 1941 2275 -1039 187 294 0 0 chr11 8197235 8197286 -140586186 + L2 LINE L2 2447 2497 -817 245 308 81 38 chr11 8199268 8199453 -140584019 + MIR3 SINE MIR 16 208 0 2221 117 7 0 chr11 8201048 8201356 -140582116 - AluSx SINE Alu -2 310 1 303 236 14 0 chr11 8202825 8202897 -140580575 - L2 LINE L2 0 3272 3200 1523 113 42 0 chr11 8204849 8205062 -140578410 - AluSg/x SINE Alu -9 301 80 832 182 44 0 chr11 8205740 8205899 -140577573 + MER7A DNA MER2_type 6 169 -177 845 179 103 0 chr11 8205983 8206139 -140577333 + MER7A DNA MER2_type 174 345 -1 2300 85 3 0 chr11 8206342 8206653 -140576819 - AluSp SINE Alu 0 312 1 843 226 11 27 chr11 8207083 8207269 -140576203 + MIR SINE MIR 7 189 -73 284 306 92 51 chr11 8209211 8209505 -140573967 + L2 LINE L2 2915 3220 -52 3213 196 50 53 chr11 8210349 8211333 -140572139 - L1MC5 LINE L1 -430 7531 6633 1200 162 60 0 chr11 8211473 8211689 -140571783 - MSTB1 LTR MaLR 0 432 204 688 159 0 0 chr11 8211689 8211796 -140571676 + AluSq/x SINE Alu 2 108 -205 3615 80 31 0 chr11 8411857 8412333 -140371139 - L1P LINE L1 -5649 497 7 1550 133 0 0 chr11 8412504 8412715 -140370757 + AluSq SINE Alu 79 289 -24 11619 83 10 1 chr11 8413018 8414647 -140368825 - L1P LINE L1 -1485 4661 3018 1066 68 25 0 chr11 8414640 8414802 -140368670 + L1P LINE L1 4675 4840 -1306 * 270 0 0 0 chr11 8414902 8414932 -140368540 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 297 0 0 0 chr11 8414931 8414964 -140368508 + (TG)n Simple_repeat Simple_repeat 2 34 0 5352 110 15 23 chr11 8415691 8416591 -140366881 + L1MA4A LINE L1 5231 6122 -181 292 185 0 62 chr11 8416595 8416676 -140366796 + L1MA4A LINE L1 6188 6263 -40 7530 27 5 0 chr11 8416778 8417939 -140365533 + L1PA4 LINE L1 4980 6144 -11 1751 281 117 37 chr11 8417948 8418796 -140364676 + L1M4 LINE L1 2354 3133 -3013 1759 165 0 52 chr11 8418796 8419123 -140364349 + AluJo SINE Alu 1 310 -2 1751 281 117 37 chr11 8419123 8419801 -140363671 + L1M4 LINE L1 3133 4001 -2145 13233 41 1 3 chr11 8419916 8421566 -140361906 + L1P LINE L1 1422 3067 -3079 1324 209 38 48 chr11 8421666 8421744 -140361728 - L1M4 LINE L1 -1798 4348 4271 180 0 0 0 chr11 8421744 8421764 -140361708 + (TG)n Simple_repeat Simple_repeat 2 21 0 1324 209 38 48 chr11 8421764 8422024 -140361448 - L1M4 LINE L1 -1875 4271 4012 7388 71 22 2 chr11 8422024 8423838 -140359634 - L1PA7 LINE L1 -3 6151 4316 1324 209 38 48 chr11 8423838 8423871 -140359601 - L1M4 LINE L1 -2134 4012 3980 14747 27 5 0 chr11 8424017 8426484 -140356988 - L1PA4 LINE L1 -57 6098 3625 2254 102 7 3 chr11 8426595 8426900 -140356572 + AluSp SINE Alu 1 306 -7 7178 154 17 2 chr11 8427276 8429554 -140353918 - L1PB2 LINE L1 -1 6150 3837 377 171 199 74 chr11 8429724 8429837 -140353635 - MER112 DNA MER1_type -15 245 147 1807 169 3 10 chr11 8429837 8430144 -140353328 + AluJo SINE Alu 1 305 -7 377 171 199 74 chr11 8430144 8430206 -140353266 - MER112 DNA MER1_type -112 148 48 2132 123 0 0 chr11 8430217 8430534 -140352938 + AluSx SINE Alu 1 317 0 772 269 60 0 chr11 8430936 8431137 -140352335 - MIR SINE MIR -9 253 41 216 283 0 0 chr11 8431521 8431574 -140351898 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1139 156 12 38 chr11 8431652 8432052 -140351420 + MLT1D LTR MaLR 1 505 0 461 268 196 22 chr11 8432123 8432347 -140351125 + L3 LINE CR1 1191 1453 -124 421 269 35 47 chr11 8432391 8432562 -140350910 - MIR SINE MIR -40 222 54 242 379 73 8 chr11 8432626 8432750 -140350722 - L2 LINE L2 0 3272 3141 1383 292 108 15 chr11 8433115 8434008 -140349464 + L1M4 LINE L1 4247 5222 -924 1569 144 72 22 chr11 8434092 8434369 -140349103 - AluJo SINE Alu -19 293 3 855 133 47 0 chr11 8434978 8435106 -140348366 + AluJo SINE Alu 1 134 -178 2508 172 0 0 chr11 8435347 8435782 -140347690 + L1P LINE L1 4497 4931 -1215 2159 116 0 54 chr11 8436031 8436384 -140347088 + MER1B DNA MER1_type 4 337 0 363 163 0 0 chr11 8436910 8436990 -140346482 + CT-rich Low_complexity Low_complexity 1 80 0 459 224 0 0 chr11 8437060 8437167 -140346305 + (TA)n Simple_repeat Simple_repeat 2 108 0 785 270 0 38 chr11 8438346 8438557 -140344915 + MIR SINE MIR 6 208 -54 267 286 20 31 chr11 8438765 8438863 -140344609 + L3 LINE CR1 1480 1576 -1 1862 205 63 14 chr11 8439044 8439348 -140344124 + MER63B DNA MER1_type 1 332 -730 1829 140 16 45 chr11 8439348 8439662 -140343810 - AluJo SINE Alu -7 305 1 1862 205 63 14 chr11 8439662 8439771 -140343701 + MER63B DNA MER1_type 332 434 -2 6045 96 27 8 chr11 8440542 8441950 -140341522 - L1PA15 LINE L1 -8 6157 4722 3924 154 70 35 chr11 8442005 8443567 -140339905 - L1MB7 LINE L1 -19 6165 4556 5740 139 28 16 chr11 8443773 8445117 -140338355 + L1PA14 LINE L1 4803 6161 0 675 269 137 15 chr11 8445171 8445506 -140337966 - L1MC/D LINE L1 -2059 5749 5374 206 234 31 47 chr11 8445683 8445747 -140337725 - L2 LINE L2 0 3313 3251 1611 187 49 6 chr11 8446600 8446948 -140336524 - Tigger6a DNA MER2_type -1 1082 720 1695 166 47 1 chr11 8446950 8447390 -140336082 - Tigger6a DNA MER2_type -576 507 2 503 247 91 0 chr11 8447665 8447819 -140335653 - L1 LINE L1 -1037 5109 4942 39359 70 7 25 chr11 8447828 8453924 -140329548 - L1PA6 LINE L1 -168 5986 1 3547 174 434 9 chr11 8453923 8455145 -140328327 - L1 LINE L1 -1189 4957 3217 * 603 277 148 57 chr11 8455150 8455645 -140327827 - L1MEd LINE L1 -5028 1091 552 3782 92 24 16 chr11 8456047 8456622 -140326850 + L1MA3 LINE L1 5726 6305 0 1708 82 10 33 chr11 8458519 8458822 -140324650 + Tigger3(Golem) DNA MER2_type 2248 2543 -486 852 323 46 32 chr11 8458822 8459323 -140324149 + L1M3b LINE L1 5 512 -5769 687 289 0 5 chr11 8459588 8459799 -140323673 + L1M3b LINE L1 1096 1305 -4976 2080 156 0 0 chr11 8459799 8460094 -140323378 + AluSx SINE Alu 1 295 -17 767 137 75 27 chr11 8460133 8460279 -140323193 + THE1B LTR MaLR 197 349 -15 3216 89 16 10 chr11 8460290 8460784 -140322688 + THE1B-int LTR MaLR 1 497 -1083 720 122 0 0 chr11 8460784 8460882 -140322590 + AluSg SINE Alu 1 98 -212 331 138 11 23 chr11 8460882 8460969 -140322503 + L1MA4 LINE L1 3109 3194 -2952 5814 178 51 31 chr11 8461287 8463054 -140320418 + L1MA4 LINE L1 3177 4907 -1393 3164 32 0 0 chr11 8463054 8463427 -140320045 - L1PA5 LINE L1 0 6154 5782 5814 178 51 31 chr11 8463427 8463715 -140319757 + L1MA4 LINE L1 4907 5188 -1112 2345 100 3 0 chr11 8463715 8464026 -140319446 + AluSq SINE Alu 1 312 -1 5814 178 51 31 chr11 8464026 8464920 -140318552 + L1MA4 LINE L1 5188 6289 -11 2722 131 49 10 chr11 8464920 8465410 -140318062 + Tigger3(Golem) DNA MER2_type 2521 3029 0 399 147 0 0 chr11 8465410 8465478 -140317994 - L1 LINE L1 -1406 4740 4673 268 341 23 8 chr11 8465516 8465645 -140317827 + L2 LINE L2 3179 3309 -4 334 136 25 0 chr11 8466850 8466931 -140316541 + (TA)n Simple_repeat Simple_repeat 1 83 0 1883 46 0 13 chr11 8466984 8467222 -140316250 + L1PA7 LINE L1 5920 6154 0 3084 91 24 4 chr11 8467335 8467797 -140315675 - L1MA1 LINE L1 0 6302 5832 1812 129 43 7 chr11 8468223 8468502 -140314970 + AluJb SINE Alu 3 291 -21 1058 180 43 5 chr11 8468606 8468817 -140314655 - MER20 DNA MER1_type 0 219 1 22 35 0 0 chr11 8470054 8470083 -140313389 + AT_rich Low_complexity Low_complexity 1 29 0 2538 210 28 58 chr11 8470180 8470235 -140313237 - L1MA9 LINE L1 -39 6273 6218 261 0 0 0 chr11 8470235 8470264 -140313208 + (GA)n Simple_repeat Simple_repeat 2 30 0 2538 210 28 58 chr11 8470264 8470720 -140312752 - L1MA9 LINE L1 -94 6218 5790 1496 208 26 29 chr11 8470720 8471032 -140312440 - AluJo SINE Alu -1 311 1 2538 210 28 58 chr11 8471032 8471295 -140312177 - L1MA9 LINE L1 -522 5790 5521 199 161 0 0 chr11 8472481 8472512 -140310960 - L2 LINE L2 -1 3271 3241 1094 220 46 9 chr11 8472778 8472996 -140310476 + MIR SINE MIR 6 231 -31 1623 184 13 7 chr11 8473016 8473325 -140310147 - AluJb SINE Alu -1 311 1 744 97 0 18 chr11 8473389 8473503 -140309969 - AluSg SINE Alu 0 310 199 688 113 21 0 chr11 8473508 8473605 -140309867 - AluSg SINE Alu -210 100 2 1132 181 10 42 chr11 8473654 8473841 -140309631 + L1MDa LINE L1 1065 1256 -5205 1637 155 44 73 chr11 8473841 8473952 -140309520 + AluJo SINE Alu 1 114 -198 2362 98 3 0 chr11 8473952 8474258 -140309214 + AluSx SINE Alu 2 308 -4 1637 155 44 73 chr11 8474258 8474463 -140309009 + AluJo SINE Alu 114 308 -4 1132 181 10 42 chr11 8474463 8474593 -140308879 + L1MDa LINE L1 1256 1668 -4793 330 325 13 53 chr11 8474597 8474791 -140308681 - L1MC4 LINE L1 -393 7467 7227 2418 71 0 0 chr11 8475010 8475306 -140308166 - AluSq SINE Alu -16 297 2 425 291 24 0 chr11 8476516 8476643 -140306829 - MER117 DNA MER1_type 0 197 68 1245 210 0 0 chr11 8476821 8477045 -140306427 - MER58A DNA MER1_type 0 224 1 494 341 39 0 chr11 8477053 8477235 -140306237 + MER5A DNA MER1_type 1 189 0 357 319 69 5 chr11 8477256 8477444 -140306028 - L1M4 LINE L1 -2577 3569 3370 1220 236 143 31 chr11 8477446 8477962 -140305510 + MLT1G LTR MaLR 1 574 -16 575 296 73 45 chr11 8477989 8478309 -140305163 - L1M4 LINE L1 -2793 3353 3013 2114 132 0 3 chr11 8478309 8478619 -140304853 + AluSx SINE Alu 1 309 -3 575 296 73 45 chr11 8478619 8478788 -140304684 - L1M4 LINE L1 -3133 3013 2850 1622 212 102 36 chr11 8479342 8479814 -140303658 - MLT1D LTR MaLR 0 505 3 664 228 24 134 chr11 8480167 8480421 -140303051 + MIR SINE MIR 6 231 -31 1366 125 76 163 chr11 8480736 8481209 -140302263 - LTR23 LTR ERV1 -5 432 1 22 35 0 0 chr11 8481367 8481396 -140302076 + AT_rich Low_complexity Low_complexity 1 29 0 446 225 43 7 chr11 8481831 8481969 -140301503 - L1ME3A LINE L1 -6 6164 6022 1749 138 35 48 chr11 8482025 8482336 -140301136 + AluSq SINE Alu 1 307 -6 248 195 67 65 chr11 8482389 8482532 -140300940 - L1ME3A LINE L1 -211 5955 5811 1651 261 52 24 chr11 8482630 8482893 -140300579 - L1M3 LINE L1 -361 6308 6054 1994 117 21 3 chr11 8482893 8483183 -140300289 - AluSc SINE Alu -14 295 1 1651 261 52 24 chr11 8483183 8484261 -140299211 - L1M3 LINE L1 -615 6054 4914 787 237 28 0 chr11 8484272 8484429 -140299043 - L1MA10 LINE L1 -7 6327 6161 186 43 0 0 chr11 8484429 8484452 -140299020 + (TTA)n Simple_repeat Simple_repeat 2 24 0 787 237 28 0 chr11 8484452 8484505 -140298967 - L1MA10 LINE L1 -173 6161 6111 965 127 5 89 chr11 8484506 8484719 -140298753 - MER6 DNA MER2_type 0 865 671 851 185 11 0 chr11 8484725 8484959 -140298513 - L1M2 LINE L1 -743 5403 5211 22 0 0 0 chr11 8484959 8484981 -140298491 + AT_rich Low_complexity Low_complexity 1 22 0 6153 77 17 7 chr11 8484984 8486501 -140296971 - SVA Other Other -760 1369 32 213 39 0 0 chr11 8486521 8486547 -140296925 + (GGGAGA)n Simple_repeat Simple_repeat 4 29 0 824 219 25 21 chr11 8486709 8486947 -140296525 - L1M3 LINE L1 -2269 4375 4137 1449 189 32 74 chr11 8486956 8487043 -140296429 - L1M3 LINE L1 -4732 1914 1825 2066 129 30 3 chr11 8487043 8487338 -140296134 + AluJb SINE Alu 1 303 -9 1449 189 32 74 chr11 8487338 8487721 -140295751 - L1M3 LINE L1 -4821 1825 1464 2514 61 0 0 chr11 8487931 8488226 -140295246 + AluY SINE Alu 1 295 -16 23 0 0 0 chr11 8488243 8488266 -140295206 + AT_rich Low_complexity Low_complexity 1 23 0 225 214 0 0 chr11 8488650 8488692 -140294780 + T-rich Low_complexity Low_complexity 1 42 0 36570 83 4 7 chr11 8488701 8494854 -140288618 - L1PA6 LINE L1 -7 6147 11 5387 211 26 44 chr11 8494872 8495054 -140288418 - L1M3 LINE L1 -5070 1472 1288 1648 201 55 26 chr11 8495054 8495437 -140288035 + MSTD LTR MaLR 3 396 0 5387 211 26 44 chr11 8495437 8495518 -140287954 - L1M3 LINE L1 -5254 1288 1207 1828 187 10 3 chr11 8495518 8495828 -140287644 - AluJo SINE Alu 0 312 1 5387 211 26 44 chr11 8495828 8497054 -140286418 - L1M3 LINE L1 -5335 1207 8 760 326 112 58 chr11 8497086 8497362 -140286110 + L2 LINE L2 1932 2192 -1122 1950 144 13 0 chr11 8497362 8497661 -140285811 - AluJo SINE Alu -9 303 1 760 326 112 58 chr11 8497661 8498142 -140285330 + L2 LINE L2 2192 2730 -584 1041 321 67 29 chr11 8498151 8498876 -140284596 - L2 LINE L2 -69 3203 2464 392 331 16 8 chr11 8501532 8501656 -140281816 + L2 LINE L2 2927 3051 -221 299 277 8 108 chr11 8501688 8501772 -140281700 - MIR SINE MIR -27 235 167 2353 68 0 7 chr11 8501772 8502098 -140281374 + AluY SINE Alu 1 311 0 299 277 8 108 chr11 8502098 8502143 -140281329 - MIR SINE MIR -95 167 119 227 270 16 16 chr11 8503384 8503447 -140280025 - L2 LINE L2 -60 3212 3150 22 0 0 0 chr11 8503470 8503492 -140279980 + AT_rich Low_complexity Low_complexity 1 22 0 435 242 245 49 chr11 8504466 8504792 -140278680 - L3 LINE CR1 -7 1570 1181 181 241 19 74 chr11 8504855 8504909 -140278563 - L2 LINE L2 -7 3265 3215 2225 128 0 0 chr11 8504937 8505242 -140278230 - AluSx SINE Alu -7 305 1 2183 70 10 73 chr11 8505356 8505670 -140277802 - AluSc SINE Alu -15 294 1 366 23 0 0 chr11 8507620 8507663 -140275809 + (TG)n Simple_repeat Simple_repeat 2 44 0 736 272 111 0 chr11 8508085 8508387 -140275085 - L2 LINE L2 -175 3138 2793 334 239 36 56 chr11 8508547 8508723 -140274749 - MLT1L LTR MaLR -308 161 7 520 196 142 88 chr11 8509346 8509586 -140273886 + MER112 DNA MER1_type 8 260 0 2013 132 0 7 chr11 8510614 8510903 -140272569 - AluSp SINE Alu -17 296 10 1094 210 39 11 chr11 8511155 8511441 -140272031 - AluSq SINE Alu -9 294 1 24 0 0 0 chr11 8512023 8512047 -140271425 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr11 8512613 8512666 -140270806 + AT_rich Low_complexity Low_complexity 1 53 0 1474 166 70 0 chr11 8512726 8512985 -140270487 + Tigger1 DNA MER2_type 230 506 -1912 1668 186 3 14 chr11 8513103 8513394 -140270078 + AluJo SINE Alu 1 288 -24 24 0 0 0 chr11 8513397 8513421 -140270051 + AT_rich Low_complexity Low_complexity 1 24 0 325 300 8 8 chr11 8513683 8513813 -140269659 - HAL1b LINE L1 -10 1338 1209 13779 130 61 3 chr11 8514249 8516532 -140266940 + Tigger1 DNA MER2_type 2 2418 0 2245 121 28 25 chr11 8516953 8517316 -140266156 + THE1B LTR MaLR 1 364 0 11707 88 14 6 chr11 8517316 8517375 -140266097 + THE1B-int LTR MaLR 1 58 -1522 2179 127 0 0 chr11 8517375 8517667 -140265805 - AluSc SINE Alu -17 292 1 11707 88 14 6 chr11 8517667 8519175 -140264297 + THE1B-int LTR MaLR 58 1580 0 2209 137 19 25 chr11 8519175 8519541 -140263931 + THE1B LTR MaLR 1 364 0 565 264 104 14 chr11 8521919 8522283 -140261189 - L1MEc LINE L1 -4943 1453 1057 23 33 0 0 chr11 8522285 8522315 -140261157 + AT_rich Low_complexity Low_complexity 1 30 0 3813 229 47 9 chr11 8522341 8523239 -140260233 - L1MEc LINE L1 -5430 966 35 207 322 20 72 chr11 8523875 8524027 -140259445 + L3 LINE CR1 843 986 -591 998 238 116 47 chr11 8524200 8524519 -140258953 + MER58B DNA MER1_type 1 341 0 345 343 98 59 chr11 8524600 8525108 -140258364 + L2 LINE L2 2732 3272 0 1483 127 139 11 chr11 8525688 8525955 -140257517 - L1MC1 LINE L1 -8 6325 6025 317 200 167 22 chr11 8526064 8526154 -140257318 - MIR SINE MIR -57 151 49 2210 90 0 10 chr11 8526306 8526596 -140256876 - AluY SINE Alu -24 287 1 448 262 93 0 chr11 8528060 8528167 -140255305 + L2 LINE L2 3197 3313 0 22 0 0 0 chr11 8528719 8528741 -140254731 + AT_rich Low_complexity Low_complexity 1 22 0 1529 164 13 34 chr11 8529324 8529622 -140253850 - AluJb SINE Alu -20 292 1 2070 128 7 0 chr11 8529909 8530199 -140253273 - AluSx SINE Alu -20 292 1 3123 189 22 84 chr11 8530310 8531245 -140252227 - L1ME1 LINE L1 -2 6176 5318 427 255 204 4 chr11 8531233 8531464 -140252008 - L1ME1 LINE L1 -2232 3914 3638 * 6821 69 20 9 chr11 8531555 8532330 -140251142 - L1PA7 LINE L1 -2 6152 5361 15285 30 4 0 chr11 8532330 8534923 -140248549 - L1PA4 LINE L1 -1 6154 3550 6821 69 20 9 chr11 8534923 8535582 -140247890 - L1PA7 LINE L1 -793 5361 4711 432 127 0 14 chr11 8535687 8535758 -140247714 + L1P LINE L1 4602 4671 -1475 237 308 28 22 chr11 8535848 8536030 -140247442 - L1ME1 LINE L1 -2664 3482 3300 579 269 0 7 chr11 8536095 8536236 -140247236 - L2 LINE L2 -2 3311 3172 299 268 37 0 chr11 8536313 8536395 -140247077 + MIR SINE MIR 149 233 -29 538 289 98 100 chr11 8536495 8536605 -140246867 - L1ME1 LINE L1 -2931 3215 3106 1480 187 20 47 chr11 8536605 8536905 -140246567 - AluJo SINE Alu -13 299 8 538 289 98 100 chr11 8536905 8537375 -140246097 - L1ME1 LINE L1 -3040 3106 2636 1438 151 94 51 chr11 8537506 8537857 -140245615 - L1ME2 LINE L1 0 6164 5799 357 93 0 0 chr11 8538560 8538614 -140244858 + (TG)n Simple_repeat Simple_repeat 2 55 0 335 250 30 50 chr11 8538677 8538777 -140244695 + MIR SINE MIR 79 176 -86 1677 184 3 20 chr11 8538972 8539271 -140244201 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 8540018 8540048 -140243424 + AT_rich Low_complexity Low_complexity 1 30 0 336 360 75 18 chr11 8540443 8540721 -140242751 + L2 LINE L2 2451 2744 -570 245 116 58 0 chr11 8540744 8540813 -140242659 + (TA)n Simple_repeat Simple_repeat 1 73 0 204 40 0 0 chr11 8540834 8540859 -140242613 + (GCATG)n Simple_repeat Simple_repeat 3 27 0 250 325 133 21 chr11 8541262 8541450 -140242022 + L2 LINE L2 3104 3312 -1 2175 123 0 0 chr11 8543633 8543934 -140239538 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr11 8544441 8544468 -140239004 + AT_rich Low_complexity Low_complexity 1 27 0 270 304 87 9 chr11 8545572 8545687 -140237785 + L2 LINE L2 3163 3286 -27 907 260 115 11 chr11 8545821 8546090 -140237382 + MLT1J LTR MaLR 156 452 -59 215 281 62 0 chr11 8546255 8546319 -140237153 - L2 LINE L2 -4 3309 3242 2011 92 18 95 chr11 8546361 8546688 -140236784 - AluSc SINE Alu -7 302 1 1596 298 63 21 chr11 8546692 8547266 -140236206 - L2 LINE L2 -606 2708 2111 238 309 0 15 chr11 8548356 8548424 -140235048 + MER5A DNA MER1_type 123 189 0 248 294 59 73 chr11 8548497 8548633 -140234839 - L2 LINE L2 0 3272 3139 2389 87 0 0 chr11 8549466 8549764 -140233708 + AluSg SINE Alu 1 298 -12 293 319 142 35 chr11 8549832 8549973 -140233499 - L2 LINE L2 0 3272 3117 1086 94 29 12 chr11 8550063 8550233 -140233239 - MER30 DNA MER1_type -57 173 1 1600 202 84 33 chr11 8551475 8552080 -140231392 - Charlie2 DNA MER1_type -225 2637 2002 639 313 45 38 chr11 8552778 8553485 -140229987 + HAL1 LINE L1 958 1669 -838 257 313 88 0 chr11 8553842 8554059 -140229413 + L1ME2 LINE L1 3038 3273 -2873 429 136 0 0 chr11 8554060 8554119 -140229353 + AluS SINE Alu 2 60 -258 2088 127 64 11 chr11 8554119 8554496 -140228976 + LTR1 LTR ERV1 34 430 -355 1072 176 20 20 chr11 8556574 8556773 -140226699 - MER58A DNA MER1_type 0 224 26 244 187 0 44 chr11 8557662 8557753 -140225719 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 524 286 32 68 chr11 8558046 8558298 -140225174 + L3 LINE CR1 1330 1572 -5 183 80 0 0 chr11 8558383 8558408 -140225064 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 2291 125 0 0 chr11 8559089 8559401 -140224071 + AluSx SINE Alu 1 312 0 605 264 181 0 chr11 8559862 8560078 -140223394 + MIR SINE MIR 6 260 -2 394 320 76 20 chr11 8560338 8560535 -140222937 + MLT1H LTR MaLR 50 257 -292 2420 169 37 13 chr11 8560709 8561216 -140222256 + MER68 LTR ERV1 1 562 0 530 234 58 21 chr11 8561645 8561833 -140221639 - L1MEc LINE L1 -4432 2289 2095 1124 255 91 0 chr11 8561854 8562238 -140221234 - L1MEc LINE L1 -4727 1813 1395 5795 224 68 43 chr11 8562247 8563692 -140219780 + L1ME2 LINE L1 3365 4773 -1391 2679 39 0 3 chr11 8563692 8564001 -140219471 - AluY SINE Alu -3 308 1 5795 224 68 43 chr11 8564001 8564708 -140218764 + L1ME2 LINE L1 4773 5461 -703 2106 113 14 0 chr11 8564708 8564999 -140218473 - AluY SINE Alu -16 295 1 5795 224 68 43 chr11 8564999 8565581 -140217891 + L1ME2 LINE L1 5461 6164 0 1053 244 76 21 chr11 8566451 8566779 -140216693 + L1MC4a LINE L1 5595 5940 -1868 2665 90 28 3 chr11 8566797 8567152 -140216320 - THE1B LTR MaLR 0 364 1 324 161 0 16 chr11 8567157 8567219 -140216253 + MER116 DNA Mariner 1 61 -19 22 0 0 0 chr11 8571695 8571717 -140211755 + AT_rich Low_complexity Low_complexity 1 22 0 660 259 74 26 chr11 8572278 8572548 -140210924 + LTR33 LTR ERVL 1 283 -238 663 225 34 98 chr11 8574180 8574416 -140209056 - MIR SINE MIR -9 253 33 2552 44 3 0 chr11 8575694 8575987 -140207485 + AluY SINE Alu 1 294 -17 427 212 18 26 chr11 8576009 8576122 -140207350 - L2 LINE L2 -2 3311 3200 662 285 163 30 chr11 8576361 8576787 -140206685 - L2 LINE L2 -467 2847 2341 4368 171 55 39 chr11 8576787 8577726 -140205746 - LTR13 LTR ERVK 0 954 1 662 285 163 30 chr11 8577726 8577808 -140205664 - L2 LINE L2 -973 2341 2271 383 289 161 12 chr11 8578256 8578598 -140204874 - L3 LINE CR1 -42 1535 1143 2375 115 42 0 chr11 8580497 8580854 -140202618 - L1PB3 LINE L1 0 6154 5783 542 299 43 9 chr11 8581153 8581364 -140202108 + MIR SINE MIR 1 218 -44 338 87 0 0 chr11 8581506 8581552 -140201920 - AluJo SINE Alu -10 292 247 1542 151 0 20 chr11 8581618 8581863 -140201609 - AluJo SINE Alu -72 240 1 371 266 65 43 chr11 8581865 8582004 -140201468 - HAL1 LINE L1 -2135 372 231 30 27 0 0 chr11 8582113 8582150 -140201322 + AT_rich Low_complexity Low_complexity 1 37 0 1214 8 0 0 chr11 8582306 8582438 -140201034 - AluYb8 SINE Alu -8 310 179 267 317 35 95 chr11 8582438 8582551 -140200921 - L1MEd LINE L1 -5549 570 452 2193 111 7 13 chr11 8582551 8582849 -140200623 - AluSp SINE Alu -17 296 1 267 317 35 95 chr11 8582849 8583082 -140200390 - L1MEd LINE L1 -5667 452 245 339 319 89 51 chr11 8583748 8584118 -140199354 - LTR67 LTR ERVL -138 419 36 1794 218 14 6 chr11 8584412 8584775 -140198697 - MLT2D LTR ERVL -48 366 1 496 267 247 28 chr11 8585359 8585971 -140197501 - L2 LINE L2 -248 3065 2325 2230 164 3 8 chr11 8586239 8586604 -140196868 + MLT1A1 LTR MaLR 3 365 0 22 0 0 0 chr11 8587368 8587390 -140196082 + AT_rich Low_complexity Low_complexity 1 22 0 1230 285 72 4 chr11 8587656 8588115 -140195357 - L2 LINE L2 0 3313 2824 201 305 0 0 chr11 8589832 8589891 -140193581 - MIR SINE MIR -63 145 87 225 336 74 13 chr11 8589978 8590127 -140193345 - L2 LINE L2 -210 3062 2905 2581 59 0 0 chr11 8590685 8590988 -140192484 - AluY SINE Alu -8 303 1 2212 168 12 22 chr11 8591261 8591661 -140191811 + MSTD LTR MaLR 1 396 0 241 298 116 46 chr11 8592437 8592850 -140190622 - L2 LINE L2 -495 2819 2378 2133 109 7 0 chr11 8594357 8594669 -140188803 - AluSx SINE Alu 0 314 1 198 333 70 0 chr11 8595211 8595325 -140188147 + MIR SINE MIR 22 143 -65 3700 176 66 18 chr11 8595391 8596103 -140187369 - LTR39 LTR ERV1 0 783 38 796 215 25 0 chr11 8596106 8596269 -140187203 - MIR SINE MIR -23 239 73 1560 211 82 26 chr11 8597239 8597692 -140185780 - L1ME LINE L1 -480 5686 5185 2000 146 0 3 chr11 8597692 8597993 -140185479 - AluJb SINE Alu -12 300 1 1560 211 82 26 chr11 8597993 8598217 -140185255 - L1ME LINE L1 -981 5185 4975 296 262 37 19 chr11 8598322 8598429 -140185043 - HAL1b LINE L1 -49 1299 1191 670 83 4 78 chr11 8598533 8598800 -140184672 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 8598865 8598886 -140184586 + AT_rich Low_complexity Low_complexity 1 21 0 325 287 86 17 chr11 8599667 8599841 -140183631 - L1ME LINE L1 -1227 4919 4734 480 310 139 24 chr11 8599931 8600218 -140183254 - L1ME LINE L1 -1515 4631 4312 345 293 40 30 chr11 8600276 8600474 -140182998 - L1ME LINE L1 -1924 4222 4023 376 338 88 7 chr11 8600497 8600645 -140182827 - L1ME LINE L1 -2275 3871 3712 455 33 16 0 chr11 8601242 8601303 -140182169 + (CA)n Simple_repeat Simple_repeat 2 63 0 312 275 83 25 chr11 8601480 8601600 -140181872 - L1MC4 LINE L1 -1335 6707 6581 265 191 33 40 chr11 8601609 8601761 -140181711 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 358 202 0 101 chr11 8601764 8601863 -140181609 - L1MC4 LINE L1 -1340 6702 6614 353 204 0 112 chr11 8601775 8601873 -140181599 + L1MC4 LINE L1 6617 6703 -1339 * 250 233 17 0 chr11 8601905 8601965 -140181507 + L1M4 LINE L1 2957 3017 -3129 591 222 83 44 chr11 8601970 8602293 -140181179 - MLT1I LTR MaLR -2 407 82 28 0 0 0 chr11 8602441 8602469 -140181003 + AT_rich Low_complexity Low_complexity 1 28 0 3545 96 14 0 chr11 8602537 8603047 -140180425 - Tigger4(Zombi) DNA MER2_type -3 2728 2212 461 195 0 0 chr11 8603052 8603134 -140180338 - Tigger4(Zombi) DNA MER2_type -2649 82 1 26 0 0 0 chr11 8603200 8603226 -140180246 + AT_rich Low_complexity Low_complexity 1 26 0 1671 99 4 0 chr11 8603511 8603744 -140179728 + L1PA11 LINE L1 5939 6172 -2 232 222 0 28 chr11 8603833 8603905 -140179567 + (TA)n Simple_repeat Simple_repeat 2 71 0 43 20 0 0 chr11 8603949 8603999 -140179473 + AT_rich Low_complexity Low_complexity 1 50 0 808 279 150 19 chr11 8605742 8606278 -140177194 + L2 LINE L2 2685 3313 0 207 362 103 0 chr11 8606399 8606515 -140176957 - L2 LINE L2 -6 3266 3139 258 227 61 0 chr11 8606600 8606666 -140176806 - L2 LINE L2 -86 3227 3158 284 315 18 45 chr11 8606678 8606789 -140176683 + MIR SINE MIR 71 178 -84 * 389 274 44 15 chr11 8606774 8606909 -140176563 - MIR3 SINE MIR -38 170 32 480 252 42 8 chr11 8607289 8607408 -140176064 - L2 LINE L2 -11 3302 3180 577 178 68 0 chr11 8607684 8607830 -140175642 + L1MB8 LINE L1 6017 6172 -6 335 254 36 7 chr11 8607830 8607968 -140175504 + L1MC4a LINE L1 4904 5045 -1101 729 312 96 35 chr11 8608135 8608740 -140174732 + L1MC4a LINE L1 5256 5897 -1911 903 176 0 48 chr11 8608893 8609058 -140174414 + FRAM SINE Alu 1 156 -20 502 286 121 57 chr11 8609160 8609598 -140173874 + L2 LINE L2 2567 3029 -243 182 37 37 0 chr11 8610730 8610757 -140172715 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 290 252 99 46 chr11 8611085 8611236 -140172236 + MLT1J2 LTR MaLR 1 159 -291 2137 142 0 3 chr11 8612985 8613294 -140170178 + AluSx SINE Alu 1 308 -4 229 241 102 77 chr11 8613494 8613768 -140169704 + L2 LINE L2 2472 2752 -562 * 630 283 23 39 chr11 8613758 8614020 -140169452 - MIR SINE MIR 0 262 6 1446 260 94 15 chr11 8614055 8614563 -140168909 + L2 LINE L2 2780 3312 -1 238 328 39 8 chr11 8614569 8614697 -140168775 + L2 LINE L2 2919 3050 -222 388 325 33 8 chr11 8615133 8615253 -140168219 - MER91C DNA MER1_type 0 140 18 548 291 35 35 chr11 8615864 8616063 -140167409 - MIR SINE MIR -56 206 8 884 270 103 71 chr11 8617177 8617486 -140165986 - L2 LINE L2 -297 3016 2675 2297 113 7 0 chr11 8617486 8617796 -140165676 + AluSx SINE Alu 1 312 0 884 270 103 71 chr11 8617796 8617973 -140165499 - L2 LINE L2 -638 2675 2505 229 237 158 0 chr11 8618156 8618232 -140165240 - MIR SINE MIR -167 95 8 421 274 103 0 chr11 8618699 8618816 -140164656 - MIR SINE MIR -106 156 28 213 256 122 24 chr11 8618907 8618989 -140164483 + L2 LINE L2 3142 3231 -41 937 227 77 57 chr11 8618996 8619243 -140164229 - MIR SINE MIR -10 252 1 541 311 99 77 chr11 8619280 8619734 -140163738 - L2 LINE L2 -4 3268 2805 441 54 0 0 chr11 8619743 8619799 -140163673 + (CA)n Simple_repeat Simple_repeat 2 57 0 266 210 0 16 chr11 8620584 8620646 -140162826 + C-rich Low_complexity Low_complexity 3 63 0 228 67 0 0 chr11 8620676 8620706 -140162766 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 180 111 0 0 chr11 8622004 8622031 -140161441 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 210 329 13 0 chr11 8622055 8622134 -140161338 + (TCCA)n Simple_repeat Simple_repeat 3 82 0 224 264 11 0 chr11 8622145 8622232 -140161240 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 220 213 21 0 chr11 8622335 8622382 -140161090 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 235 140 0 0 chr11 8622457 8622507 -140160965 + LTR66 LTR ERVL 394 443 -167 603 27 0 0 chr11 8625205 8625278 -140158194 + (CA)n Simple_repeat Simple_repeat 2 74 0 385 228 185 0 chr11 8625391 8625483 -140157989 - MER91A DNA MER1_type -86 110 2 237 279 38 0 chr11 8627085 8627164 -140156308 - MER94 DNA DNA -26 108 27 519 281 0 0 chr11 8627292 8627438 -140156034 + L1ME3 LINE L1 5969 6114 -48 181 184 0 53 chr11 8627460 8627498 -140155974 - L2 LINE L2 -68 3204 3169 415 238 48 0 chr11 8627509 8627614 -140155858 + MIR SINE MIR 56 165 -97 186 323 62 0 chr11 8627612 8627677 -140155795 + L2 LINE L2 3141 3209 -63 * 328 327 93 0 chr11 8629531 8629681 -140153791 + MIR SINE MIR 74 237 -25 233 308 191 48 chr11 8630437 8630752 -140152720 + L2 LINE L2 2602 2961 -353 292 311 14 54 chr11 8630829 8630977 -140152495 + MLT1K LTR MaLR 145 286 -302 314 241 0 25 chr11 8631320 8631399 -140152073 + L1ME3A LINE L1 5886 5962 -208 1392 131 9 9 chr11 8631476 8631697 -140151775 - MER1B DNA MER1_type -76 221 1 366 241 82 132 chr11 8631700 8631801 -140151671 + L1ME3A LINE L1 5962 6048 -122 2292 84 0 32 chr11 8631801 8632111 -140151361 - AluY SINE Alu -11 300 1 366 241 82 132 chr11 8632111 8632229 -140151243 + L1ME3A LINE L1 6048 6170 0 1046 147 0 0 chr11 8632368 8632545 -140150927 - AluSg/x SINE Alu 0 310 134 2297 101 3 0 chr11 8632545 8632842 -140150630 - AluSp SINE Alu -14 299 2 312 283 38 0 chr11 8632934 8633040 -140150432 - L1MEd LINE L1 -3563 2566 2457 425 323 44 34 chr11 8633400 8633563 -140149909 - L1MEd LINE L1 -4887 1232 1072 360 64 0 0 chr11 8633563 8633610 -140149862 + (TG)n Simple_repeat Simple_repeat 2 48 0 425 323 44 34 chr11 8633610 8633830 -140149642 - L1MEd LINE L1 -5047 1072 845 205 197 30 15 chr11 8634021 8634087 -140149385 + CT-rich Low_complexity Low_complexity 6 72 0 246 81 0 0 chr11 8637027 8637064 -140146408 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 240 310 121 14 chr11 8637314 8637473 -140145999 + MIR SINE MIR 19 205 -3 210 344 16 24 chr11 8638229 8638354 -140145118 + L2 LINE L2 2248 2371 -943 2252 117 0 0 chr11 8638714 8639013 -140144459 - AluSx SINE Alu -13 299 1 439 229 31 0 chr11 8639609 8639726 -140143746 + MIR SINE MIR 46 164 -54 1946 127 0 0 chr11 8640011 8640270 -140143202 - AluSq SINE Alu -54 259 1 6190 187 21 14 chr11 8640270 8640286 -140143186 - L1P5 LINE L1 -679 5475 5461 4485 101 0 9 chr11 8640286 8640929 -140142543 + L1PA13 LINE L1 5523 6159 -4 6190 187 21 14 chr11 8640929 8641834 -140141638 - L1P5 LINE L1 -693 5461 4537 2543 114 2 53 chr11 8641834 8642003 -140141469 + THE1C LTR MaLR 1 177 -198 2221 82 4 0 chr11 8642003 8642295 -140141177 - AluSp SINE Alu 0 309 17 2543 114 2 53 chr11 8642295 8642519 -140140953 + THE1C LTR MaLR 177 375 0 6190 187 21 14 chr11 8642519 8643225 -140140247 - L1P5 LINE L1 -1617 4537 3837 2251 110 3 3 chr11 8643707 8644007 -140139465 + AluSc SINE Alu 1 300 -9 1459 137 26 72 chr11 8644601 8644908 -140138564 - THE1C LTR MaLR 0 375 83 1169 219 19 107 chr11 8645799 8646209 -140137263 + MLT1A2 LTR MaLR 1 374 0 1100 220 49 20 chr11 8647190 8647494 -140135978 + MLT1H LTR MaLR 51 363 -186 1818 126 61 0 chr11 8648379 8648673 -140134799 + AluJo SINE Alu 1 312 0 830 148 15 11 chr11 8648673 8648943 -140134529 + GA-rich Low_complexity Low_complexity 1 271 0 454 312 158 44 chr11 8648954 8648995 -140134477 - L3 LINE CR1 -203 1374 1339 1564 208 80 49 chr11 8648995 8649447 -140134025 - MLT1C LTR MaLR 0 467 2 454 312 158 44 chr11 8649447 8649950 -140133522 - L3 LINE CR1 -238 1339 768 1737 167 3 7 chr11 8650050 8650344 -140133128 + AluJo SINE Alu 1 293 -19 333 0 0 0 chr11 8651214 8651251 -140132221 + (CA)n Simple_repeat Simple_repeat 2 38 0 441 312 108 52 chr11 8651256 8651487 -140131985 - L1ME4a LINE L1 -40 6081 5838 213 263 9 53 chr11 8652634 8652748 -140130724 + (TG)n Simple_repeat Simple_repeat 2 110 0 722 247 30 12 chr11 8652748 8652914 -140130558 + MIR SINE MIR 52 220 -42 195 269 0 103 chr11 8652938 8653016 -140130456 + L2 LINE L2 2956 3025 -247 212 235 39 69 chr11 8653948 8654050 -140129422 - MIR SINE MIR -71 137 39 352 322 91 77 chr11 8654293 8654579 -140128893 + L2 LINE L2 2982 3271 -1 234 128 0 0 chr11 8654588 8654627 -140128845 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 198 167 167 69 chr11 8655392 8655464 -140128008 + MIR SINE MIR 75 153 -55 753 189 51 0 chr11 8655656 8655831 -140127641 + L1ME3 LINE L1 5647 5830 -332 3747 199 33 21 chr11 8655837 8656695 -140126777 + Tigger6a DNA MER2_type 2 869 -214 1687 167 16 16 chr11 8657302 8657432 -140126040 + AluJo SINE Alu 1 130 -182 288 0 0 0 chr11 8657432 8657464 -140126008 + (CA)n Simple_repeat Simple_repeat 2 33 0 1687 167 16 16 chr11 8657464 8657645 -140125827 + AluJo SINE Alu 129 312 0 905 231 52 0 chr11 8657645 8657870 -140125602 - MIR SINE MIR -6 256 17 319 317 106 0 chr11 8658638 8658761 -140124711 - L2 LINE L2 -1 3271 3136 304 283 151 52 chr11 8658866 8659138 -140124334 - L2 LINE L2 -491 2823 2525 191 414 29 10 chr11 8659142 8659246 -140124226 - MIR SINE MIR 0 262 157 652 271 9 32 chr11 8659248 8659469 -140124003 - LTR33 LTR ERVL -2 519 304 1154 267 41 26 chr11 8660595 8660984 -140122488 - MLT1I LTR MaLR 0 409 15 2632 107 5 29 chr11 8661451 8661835 -140121637 - THE1C LTR MaLR 0 375 1 197 200 0 0 chr11 8662175 8662210 -140121262 + MIR SINE MIR 75 109 -153 557 278 116 6 chr11 8662357 8662530 -140120942 + MIR SINE MIR 70 261 -1 464 210 63 145 chr11 8662857 8663184 -140120288 + LTR16A1 LTR ERVL 169 457 0 438 368 69 26 chr11 8663239 8663470 -140120002 - MIR SINE MIR -14 248 8 22 35 0 0 chr11 8666010 8666039 -140117433 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr11 8667704 8667747 -140115725 + (CA)n Simple_repeat Simple_repeat 1 43 0 423 207 162 0 chr11 8668539 8668650 -140114822 + MER3 DNA MER1_type 77 205 -4 829 290 68 16 chr11 8668838 8669086 -140114386 + MIR SINE MIR 2 262 0 231 36 0 0 chr11 8669090 8669118 -140114354 + (CACCAT)n Simple_repeat Simple_repeat 6 33 0 1592 242 301 11 chr11 8671884 8672631 -140110841 + L1MC4 LINE L1 6948 7911 -131 2499 184 98 45 chr11 8673686 8674279 -140109193 - MLT1E3 LTR MaLR 0 624 1 565 179 8 15 chr11 8676042 8676176 -140107296 + CT-rich Low_complexity Low_complexity 4 136 0 1107 220 43 28 chr11 8676527 8676854 -140106618 - L1ME3 LINE L1 0 6162 5831 521 222 28 49 chr11 8676854 8676998 -140106474 - Tigger6 DNA MER2_type -3 1594 1454 196 254 85 0 chr11 8677723 8677782 -140105690 + MIR SINE MIR 84 147 -61 295 297 70 62 chr11 8677905 8678033 -140105439 + MIR SINE MIR 28 147 -61 347 257 55 9 chr11 8678112 8678221 -140105251 - L2 LINE L2 -1 3312 3199 231 103 0 0 chr11 8679599 8679638 -140103834 + (CAGT)n Simple_repeat Simple_repeat 4 42 0 238 321 37 55 chr11 8679763 8679872 -140103600 - MIR3 SINE MIR -12 196 90 1144 306 50 21 chr11 8680380 8680861 -140102611 - L2 LINE L2 -2 3311 2817 24 0 0 0 chr11 8680893 8680917 -140102555 + GC_rich Low_complexity Low_complexity 1 24 0 194 304 194 44 chr11 8682067 8682294 -140101178 + L2 LINE L2 2985 3245 -27 195 313 104 17 chr11 8682485 8682600 -140100872 + MIR SINE MIR 16 140 -68 1145 172 66 66 chr11 8682616 8682935 -140100537 + MER33 DNA MER1_type 6 324 0 223 271 188 24 chr11 8684573 8684658 -140098814 + MIR SINE MIR 44 142 -66 230 297 0 0 chr11 8686107 8686181 -140097291 - MIR SINE MIR -67 141 68 901 264 17 13 chr11 8687056 8687287 -140096185 - MIR SINE MIR 0 262 31 639 313 42 32 chr11 8687583 8687800 -140095672 - MIR SINE MIR -19 243 25 212 241 0 19 chr11 8687813 8687867 -140095605 + GA-rich Low_complexity Low_complexity 4 56 0 182 65 65 0 chr11 8688000 8688031 -140095441 + GA-rich Low_complexity Low_complexity 3 35 0 205 74 0 0 chr11 8691223 8691250 -140092222 - L2 LINE L2 -15 3257 3231 342 123 0 0 chr11 8691990 8692047 -140091425 + (CA)n Simple_repeat Simple_repeat 2 58 0 388 250 107 0 chr11 8692091 8692203 -140091269 + MER63 DNA MER1_type 1 750 -86 254 274 27 0 chr11 8692530 8692603 -140090869 + L3 LINE CR1 1415 1489 -88 21 36 0 0 chr11 8693093 8693121 -140090351 + AT_rich Low_complexity Low_complexity 1 28 0 1807 157 30 10 chr11 8693121 8693426 -140090046 + AluJo SINE Alu 1 311 -1 828 281 49 20 chr11 8693484 8693730 -140089742 + MIR SINE MIR 2 254 -8 596 254 24 24 chr11 8693756 8693921 -140089551 - MIR SINE MIR -48 214 50 242 208 38 0 chr11 8694531 8694584 -140088888 - MER45 DNA AcHobo 0 1581 1527 * 1290 259 76 81 chr11 8694579 8695170 -140088302 - MER45C DNA AcHobo -320 633 46 230 309 93 32 chr11 8695341 8695587 -140087885 + L2 LINE L2 2823 3083 -189 195 69 0 0 chr11 8695815 8695844 -140087628 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 187 257 17 149 chr11 8695950 8696125 -140087347 - L2 LINE L2 -437 2877 2726 2169 133 9 35 chr11 8696156 8696502 -140086970 - MER1B DNA MER1_type 0 337 1 482 326 100 48 chr11 8697735 8698604 -140084868 + L2 LINE L2 2027 2940 -374 440 310 111 10 chr11 8698613 8699089 -140084383 - L2 LINE L2 -18 3254 2380 501 330 85 13 chr11 8699139 8699375 -140084097 - MIR SINE MIR -5 257 5 23 33 0 0 chr11 8700309 8700339 -140083133 + AT_rich Low_complexity Low_complexity 1 30 0 816 302 65 40 chr11 8700450 8701034 -140082438 - L1M4 LINE L1 -2027 4119 3551 3568 136 14 2 chr11 8701034 8701586 -140081886 - L1MB2 LINE L1 0 6171 5613 816 302 65 40 chr11 8701586 8702249 -140081223 - L1M4 LINE L1 -2595 3551 2841 409 344 21 4 chr11 8702241 8702482 -140080990 - L1M4 LINE L1 -3771 2375 2131 * 351 337 26 0 chr11 8703272 8703462 -140080010 - L1M4 LINE L1 -3782 2364 2170 523 292 54 6 chr11 8703748 8703916 -140079556 - MER91A DNA MER1_type 0 196 21 297 100 0 0 chr11 8705138 8705188 -140078284 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr11 8705652 8705675 -140077797 + GC_rich Low_complexity Low_complexity 1 23 0 631 194 82 47 chr11 8706455 8706625 -140076847 + MER69A DNA AcHobo 2 177 0 483 248 9 9 chr11 8706864 8706973 -140076499 - MER81 DNA DNA 0 114 6 507 294 39 10 chr11 8708907 8709111 -140074361 - MIR SINE MIR -33 229 20 2181 113 0 3 chr11 8709275 8709585 -140073887 + AluSg SINE Alu 1 309 -1 521 142 25 67 chr11 8709729 8709849 -140073623 + L2 LINE L2 3193 3307 -6 186 133 0 0 chr11 8710572 8710602 -140072870 + (TCTCCC)n Simple_repeat Simple_repeat 4 33 0 29 47 0 0 chr11 8710983 8711026 -140072446 + GC_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr11 8711086 8711124 -140072348 + GC_rich Low_complexity Low_complexity 1 38 0 192 167 0 0 chr11 8712108 8712138 -140071334 - MIR SINE MIR -152 110 81 201 355 32 21 chr11 8716157 8716250 -140067222 + MIR SINE MIR 111 204 -58 957 222 53 0 chr11 8717010 8717199 -140066273 - MER63A DNA MER1_type -11 199 1 286 141 306 0 chr11 8717795 8717880 -140065592 + MIR SINE MIR 37 147 -61 2625 26 0 0 chr11 8718070 8718373 -140065099 + AluY SINE Alu 1 303 -8 1653 241 109 47 chr11 8718395 8718680 -140064792 - MLT1H LTR MaLR 0 549 283 1707 167 21 0 chr11 8718680 8718961 -140064511 - AluJb SINE Alu -19 293 7 1653 241 109 47 chr11 8718961 8719190 -140064282 - MLT1H LTR MaLR -266 283 3 820 274 15 0 chr11 8719190 8719391 -140064081 - MIR SINE MIR -51 211 8 1579 224 151 48 chr11 8721248 8721784 -140061688 - MLT1E LTR MaLR 0 593 3 315 283 29 27 chr11 8721903 8722048 -140061424 - MIR SINE MIR -62 146 54 697 166 0 11 chr11 8722148 8722329 -140061143 + (CA)n Simple_repeat Simple_repeat 2 180 0 466 251 17 11 chr11 8722340 8722519 -140060953 + (CA)n Simple_repeat Simple_repeat 1 180 0 449 259 0 9 chr11 8722866 8722982 -140060490 + MIR SINE MIR 24 138 -70 188 280 20 0 chr11 8723320 8723370 -140060102 - MIR SINE MIR -104 158 108 452 119 0 83 chr11 8724562 8724646 -140058826 - L1PA16 LINE L1 -33 6133 6057 289 27 0 0 chr11 8724647 8724684 -140058788 - L1PA16 LINE L1 -185 5981 5945 271 391 8 16 chr11 8724685 8724813 -140058659 - L2 LINE L2 -556 2758 2632 308 252 36 54 chr11 8726026 8726137 -140057335 + MIR SINE MIR 16 124 -138 3361 151 23 11 chr11 8727469 8728011 -140055461 - L1MB7 LINE L1 -8 6176 5625 2755 122 39 0 chr11 8728011 8728421 -140055051 + MSTB LTR MaLR 1 426 0 3361 151 23 11 chr11 8728421 8728447 -140055025 - L1MB7 LINE L1 -559 5625 5601 188 280 43 43 chr11 8728584 8728677 -140054795 + MIR SINE MIR 88 180 -82 515 314 42 11 chr11 8728712 8728903 -140054569 - MIR SINE MIR -50 212 16 457 376 44 0 chr11 8729005 8729186 -140054286 + MIR SINE MIR 70 258 -4 323 354 23 8 chr11 8730505 8730635 -140052837 - L3 LINE CR1 -505 1072 941 521 294 213 41 chr11 8732277 8733105 -140050367 - L2 LINE L2 -59 3254 2311 2365 154 3 8 chr11 8733362 8733726 -140049746 + MLT1A1 LTR MaLR 4 365 0 194 139 0 28 chr11 8734246 8734282 -140049190 + L2 LINE L2 3217 3251 -21 674 277 55 17 chr11 8735015 8735253 -140048219 + MIR SINE MIR 15 261 -1 2050 209 45 54 chr11 8735299 8735489 -140047983 - L1ME3 LINE L1 0 6162 5972 2478 60 0 0 chr11 8735489 8735791 -140047681 - AluY SINE Alu -5 306 5 2050 209 45 54 chr11 8735791 8736156 -140047316 - L1ME3 LINE L1 -190 5972 5612 377 308 258 0 chr11 8736188 8736370 -140047102 - MIR SINE MIR -27 235 7 366 194 74 74 chr11 8737361 8737469 -140046003 - L2 LINE L2 -5 3308 3201 194 368 0 0 chr11 8737628 8737704 -140045768 + MIR SINE MIR 2 77 -185 1578 143 3 52 chr11 8737704 8737991 -140045481 + AluJb SINE Alu 26 298 -14 246 328 128 8 chr11 8738328 8738453 -140045019 - MIR SINE MIR -45 217 78 2054 196 54 41 chr11 8738454 8738989 -140044483 + L1MC4 LINE L1 7501 8042 0 255 350 55 21 chr11 8739076 8739295 -140044177 - MIR SINE MIR -29 233 6 205 313 0 10 chr11 8740421 8740517 -140042955 + GA-rich Low_complexity Low_complexity 1 95 0 381 260 142 18 chr11 8742103 8742272 -140041200 + MIR3 SINE MIR 12 201 -7 185 293 85 0 chr11 8744445 8744527 -140038945 + MIR SINE MIR 76 164 -98 1857 149 7 7 chr11 8744996 8745292 -140038180 + AluJb SINE Alu 1 296 -16 219 300 0 0 chr11 8745928 8745998 -140037474 + L3 LINE CR1 1399 1468 -109 236 274 110 48 chr11 8746030 8746176 -140037296 - MIR SINE MIR -32 230 76 838 125 8 23 chr11 8746220 8746348 -140037124 + AluSq/x SINE Alu 6 131 -182 2250 86 0 17 chr11 8746969 8747271 -140036201 + AluSc SINE Alu 1 297 -12 350 294 10 93 chr11 8747522 8747716 -140035756 + MIR3 SINE MIR 1 178 -30 2133 123 0 0 chr11 8748476 8748776 -140034696 - AluSx SINE Alu -12 300 1 780 339 62 21 chr11 8749032 8749285 -140034187 + L2 LINE L2 78 358 -2956 2299 97 3 0 chr11 8749285 8749593 -140033879 - AluSc SINE Alu 0 309 1 780 339 62 21 chr11 8749593 8749775 -140033697 + L2 LINE L2 358 531 -2783 405 89 18 0 chr11 8749779 8749835 -140033637 + Alu SINE Alu 2 58 -260 584 199 60 12 chr11 8749977 8750143 -140033329 + MIR SINE MIR 84 257 -5 365 276 31 0 chr11 8750174 8750272 -140033200 - MIR SINE MIR -82 180 80 288 287 17 40 chr11 8751047 8751206 -140032266 + (TATATG)n Simple_repeat Simple_repeat 1 157 -13 1978 85 6 82 chr11 8751206 8751523 -140031949 - AluSx SINE Alu -19 293 1 288 287 17 40 chr11 8751523 8751537 -140031935 + (TATATG)n Simple_repeat Simple_repeat 157 170 0 2160 90 30 10 chr11 8752303 8752604 -140030868 - AluSg1 SINE Alu -2 307 1 215 231 0 19 chr11 8753141 8753193 -140030279 + (CCTG)n Simple_repeat Simple_repeat 3 53 0 188 214 0 54 chr11 8754045 8754101 -140029371 - L2 LINE L2 -66 3206 3154 234 277 53 21 chr11 8754421 8754515 -140028957 + L2 LINE L2 3137 3233 -39 210 35 0 105 chr11 8754649 8754706 -140028766 + (CCCCAG)n Simple_repeat Simple_repeat 1 51 0 231 36 0 0 chr11 8754761 8754789 -140028683 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 345 257 7 44 chr11 8757409 8757545 -140025927 + GA-rich Low_complexity Low_complexity 4 134 0 520 312 28 42 chr11 8757607 8757822 -140025650 + MIR SINE MIR 2 213 -49 302 264 85 12 chr11 8758128 8758267 -140025205 - MIR SINE MIR -52 156 2 310 310 38 32 chr11 8758813 8758971 -140024501 - L2 LINE L2 -35 3278 3120 300 258 153 0 chr11 8759029 8759153 -140024319 - MIR3 SINE MIR -37 171 29 524 314 0 0 chr11 8759724 8759899 -140023573 + (CGAGG)n Simple_repeat Simple_repeat 5 179 0 189 355 187 16 chr11 8763321 8763572 -140019900 - L3 LINE CR1 -926 651 358 275 260 0 0 chr11 8763573 8763646 -140019826 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 229 253 26 148 chr11 8763684 8763913 -140019559 - L2 LINE L2 -74 3198 2998 1306 177 56 16 chr11 8764183 8764432 -140019040 + AluJo SINE Alu 1 259 -53 480 292 153 19 chr11 8765371 8765587 -140017885 + MLT1L LTR MaLR 371 615 0 281 317 8 8 chr11 8766387 8766510 -140016962 + CT-rich Low_complexity Low_complexity 5 127 0 1555 110 0 31 chr11 8766982 8767209 -140016263 + L1PA8A LINE L1 5912 6131 0 1700 155 0 14 chr11 8767325 8767602 -140015870 + AluJo SINE Alu 1 273 -39 207 0 0 0 chr11 8767682 8767689 -140015783 + (TC)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 8767689 8767712 -140015760 + (TC)n Simple_repeat Simple_repeat 2 24 0 215 267 43 60 chr11 8767734 8767850 -140015622 - MIR SINE MIR -68 140 27 241 303 56 0 chr11 8768215 8768304 -140015168 + MIR3 SINE MIR 82 175 -33 293 341 48 3 chr11 8768651 8768859 -140014613 + L3 LINE CR1 964 1233 -344 473 299 141 21 chr11 8768873 8769006 -140014466 + MIR SINE MIR 1 117 -145 1889 106 0 72 chr11 8769006 8769327 -140014145 + AluY SINE Alu 1 298 -13 473 299 141 21 chr11 8769327 8769427 -140014045 + MIR SINE MIR 117 262 0 235 260 208 19 chr11 8769440 8769594 -140013878 + L3 LINE CR1 1293 1475 -102 611 211 8 0 chr11 8769655 8769778 -140013694 - L1MA8 LINE L1 -2 6289 6166 775 228 17 22 chr11 8771628 8771808 -140011664 + MER5A DNA MER1_type 4 182 -7 1690 155 11 14 chr11 8772123 8772407 -140011065 - AluJo SINE Alu -16 296 14 211 224 0 35 chr11 8772526 8772584 -140010888 + GA-rich Low_complexity Low_complexity 4 59 0 271 266 13 0 chr11 8775485 8775564 -140007908 + MIR3 SINE MIR 77 156 -52 374 264 119 13 chr11 8776287 8776446 -140007026 - L1MCa LINE L1 -4333 2093 1918 28 29 0 0 chr11 8776446 8776481 -140006991 + AT_rich Low_complexity Low_complexity 1 35 0 2672 20 0 0 chr11 8776577 8776882 -140006590 + AluY SINE Alu 1 305 -6 538 243 76 43 chr11 8777218 8777269 -140006203 - MIR SINE MIR -12 250 202 426 205 0 0 chr11 8777269 8777347 -140006125 - MER116 DNA Mariner -2 78 1 538 243 76 43 chr11 8777347 8777480 -140005992 - MIR SINE MIR -60 202 60 23 0 0 0 chr11 8778353 8778376 -140005096 + AT_rich Low_complexity Low_complexity 1 23 0 199 319 94 43 chr11 8779015 8779212 -140004260 - MIR SINE MIR -29 233 30 295 185 0 0 chr11 8779447 8779501 -140003971 - L2 LINE L2 -2 3270 3217 1060 261 62 73 chr11 8781490 8782038 -140001434 + MLT1H LTR MaLR 8 549 0 506 252 20 54 chr11 8782138 8782285 -140001187 - MER91A DNA MER1_type -41 155 14 468 313 33 0 chr11 8783989 8784139 -139999333 - MIR SINE MIR -87 175 21 219 167 0 0 chr11 8785505 8785547 -139997925 + (TG)n Simple_repeat Simple_repeat 2 43 0 264 241 23 69 chr11 8785597 8785621 -139997851 - MIR3 SINE MIR -15 193 169 2278 124 34 8 chr11 8785621 8785976 -139997496 - THE1B LTR MaLR 0 364 1 264 241 23 69 chr11 8785976 8786038 -139997434 - MIR3 SINE MIR -39 169 111 296 219 47 0 chr11 8786092 8786156 -139997316 - MIR3 SINE MIR -30 178 112 506 143 0 12 chr11 8986338 8986422 -139797050 - AluJ/FLAM SINE Alu -228 84 2 2185 93 0 4 chr11 8986486 8986766 -139796706 + AluSx SINE Alu 20 298 -14 21 36 0 0 chr11 8988500 8988528 -139794944 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 8988599 8988758 -139794714 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 8988758 8988836 -139794636 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 8988965 8988998 -139794474 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 8989531 8989832 -139793640 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 8990851 8991086 -139792386 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 8991601 8991694 -139791778 + MER5B DNA MER1_type 24 116 -62 1784 136 63 14 chr11 8991711 8991997 -139791475 - AluSx SINE Alu -12 300 1 1739 165 7 34 chr11 8992346 8992643 -139790829 + AluJo SINE Alu 1 289 -23 2264 107 0 3 chr11 8992646 8992944 -139790528 + AluSx SINE Alu 1 297 -15 261 0 0 0 chr11 8992945 8992974 -139790498 + (TA)n Simple_repeat Simple_repeat 1 29 0 2286 95 0 0 chr11 8993273 8993584 -139789888 + AluSx SINE Alu 1 311 0 1269 113 0 11 chr11 8993588 8993774 -139789698 + AluSg/x SINE Alu 129 312 0 2258 74 14 7 chr11 8994656 8994941 -139788531 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 8994944 8994973 -139788499 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2077 152 0 0 chr11 8995063 8995366 -139788106 - AluSx SINE Alu -9 303 1 1999 132 16 13 chr11 8995743 8996054 -139787418 + AluSq SINE Alu 1 312 -1 318 50 0 0 chr11 8996189 8996229 -139787243 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 328 51 69 chr11 8997279 8997611 -139785861 + L2 LINE L2 2925 3250 -22 1768 150 27 14 chr11 8997788 8998081 -139785391 + AluJb SINE Alu 11 307 -5 1985 149 0 0 chr11 8998266 8998570 -139784902 + AluJo SINE Alu 1 304 0 2269 107 0 0 chr11 8998636 8998925 -139784547 - AluSg SINE Alu -21 289 1 3060 141 29 72 chr11 8999333 8999382 -139784090 + MER41D LTR ERV1 1 51 -506 2127 97 19 55 chr11 8999382 8999692 -139783780 - AluSx SINE Alu -13 299 1 3060 141 29 72 chr11 8999692 8999870 -139783602 + MER41D LTR ERV1 51 235 -322 1993 138 13 7 chr11 8999870 9000175 -139783297 + AluJo SINE Alu 1 307 -5 3060 141 29 72 chr11 9000175 9000402 -139783070 + MER41D LTR ERV1 235 428 -129 2222 112 3 3 chr11 9000402 9000698 -139782774 - AluSx SINE Alu -16 296 1 3060 141 29 72 chr11 9000698 9000823 -139782649 + MER41D LTR ERV1 428 557 0 412 224 213 11 chr11 9000874 9001048 -139782424 - MLT1K LTR MaLR 0 588 380 189 0 0 0 chr11 9001295 9001316 -139782156 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9001330 9001544 -139781928 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9001544 9001836 -139781636 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9002075 9002334 -139781138 - AluSq SINE Alu -53 260 1 237 277 128 69 chr11 9002599 9002787 -139780685 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9002806 9003112 -139780360 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9003134 9003460 -139780012 + L2 LINE L2 1728 2088 -1226 3356 142 2 31 chr11 9003481 9004022 -139779450 + MER1A DNA MER1_type 1 525 -2 218 341 57 0 chr11 9004089 9004177 -139779295 + MIR SINE MIR 48 140 -122 2234 116 0 6 chr11 9004238 9004549 -139778923 + AluSg SINE Alu 1 309 -1 2436 84 3 0 chr11 9005528 9005838 -139777634 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9005839 9006140 -139777332 - AluSg1 SINE Alu -8 301 1 384 77 0 0 chr11 9007267 9007319 -139776153 + (TG)n Simple_repeat Simple_repeat 1 52 0 2180 98 10 3 chr11 9007440 9007736 -139775736 - AluSx SINE Alu -13 299 2 2271 111 3 0 chr11 9007739 9008036 -139775436 - AluSg SINE Alu -12 298 1 2275 108 3 3 chr11 9008206 9008511 -139774961 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9008652 9008797 -139774675 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9008830 9008927 -139774545 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9009023 9009194 -139774278 + AluSg/x SINE Alu 113 286 -24 1588 190 6 25 chr11 9009828 9010154 -139773318 - 7SLRNA srpRNA srpRNA 0 320 1 1008 238 114 65 chr11 9010207 9010304 -139773168 - L1MC4a LINE L1 -1944 5864 5773 2149 105 23 10 chr11 9010304 9010609 -139772863 + AluSg SINE Alu 1 309 -1 1008 238 114 65 chr11 9010609 9010800 -139772672 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9010800 9010834 -139772638 + (CA)n Simple_repeat Simple_repeat 2 35 0 1008 238 114 65 chr11 9010834 9010990 -139772482 - L1MC4a LINE L1 -2215 5593 5397 1989 86 4 0 chr11 9011898 9012190 -139771282 + AluSg SINE Alu 37 329 0 562 192 0 0 chr11 9012940 9013039 -139770433 - U13 snRNA snRNA -2 102 4 191 261 11 57 chr11 9014766 9014854 -139768618 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9016496 9016553 -139766919 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 9016653 9016674 -139766798 + GC_rich Low_complexity Low_complexity 1 21 0 35 78 0 0 chr11 9016872 9016949 -139766523 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9017004 9017035 -139766437 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9017080 9017111 -139766361 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9017603 9017636 -139765836 + GC_rich Low_complexity Low_complexity 1 33 0 2266 98 3 22 chr11 9018359 9018675 -139764797 - AluSx SINE Alu -2 310 1 1933 92 32 51 chr11 9018730 9019044 -139764428 - AluSx SINE Alu -4 308 1 1737 139 7 36 chr11 9019655 9019956 -139763516 - AluJb SINE Alu -10 302 11 1875 167 3 10 chr11 9020497 9020796 -139762676 + AluJb SINE Alu 4 300 -12 2035 153 3 0 chr11 9021197 9021498 -139761974 - AluJb SINE Alu -10 302 1 304 293 151 46 chr11 9021525 9021764 -139761708 + L2 LINE L2 3009 3272 0 2579 53 0 0 chr11 9022914 9023217 -139760255 - AluY SINE Alu -8 303 1 1885 147 17 3 chr11 9023293 9023586 -139759886 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr11 9023822 9023843 -139759629 + AT_rich Low_complexity Low_complexity 1 21 0 309 0 0 0 chr11 9024473 9024509 -139758963 - MER11C LTR ERVK -1035 36 1 378 254 152 0 chr11 9025250 9025388 -139758084 - MIR SINE MIR -10 252 94 35 0 0 0 chr11 9025438 9025473 -139757999 + AT_rich Low_complexity Low_complexity 1 35 0 1748 146 46 30 chr11 9025501 9025803 -139757669 - AluJo SINE Alu -5 307 1 414 271 33 33 chr11 9026120 9026271 -139757201 - L2 LINE L2 -193 3120 2970 2077 148 0 0 chr11 9026425 9026723 -139756749 + AluSx SINE Alu 1 298 -14 2069 120 7 13 chr11 9026842 9027141 -139756331 + AluSx SINE Alu 1 297 -15 9501 125 38 66 chr11 9027159 9028274 -139755198 + L1M1 LINE L1 22 1167 -6398 1924 168 13 0 chr11 9028274 9028577 -139754895 + AluSx SINE Alu 1 307 -5 9501 125 38 66 chr11 9028577 9029877 -139753595 + L1M1 LINE L1 1167 3044 -4521 1305 173 35 35 chr11 9029877 9030137 -139753335 + AluJo SINE Alu 45 304 -8 9621 146 23 39 chr11 9030137 9030283 -139753189 + L1M1 LINE L1 3038 3185 -4380 2190 113 0 0 chr11 9030283 9030607 -139752865 + AluSg SINE Alu 1 324 0 9621 146 23 39 chr11 9030607 9031213 -139752259 + L1M1 LINE L1 3185 3800 -3765 2430 93 0 0 chr11 9031213 9031513 -139751959 + AluSx SINE Alu 1 300 -12 9621 146 23 39 chr11 9031513 9032176 -139751296 + L1M1 LINE L1 3800 4473 -3092 1782 164 4 11 chr11 9032176 9032486 -139750986 + AluSx SINE Alu 3 310 0 9621 146 23 39 chr11 9032486 9032659 -139750813 + L1M1 LINE L1 4473 4647 -2918 2321 70 40 7 chr11 9032659 9032960 -139750512 + AluY SINE Alu 1 311 0 9621 146 23 39 chr11 9032960 9033518 -139749954 + L1M1 LINE L1 4647 5213 -2352 9412 96 8 21 chr11 9033518 9034821 -139748651 - HSMAR1 DNA Mariner 0 1287 3 9621 146 23 39 chr11 9034821 9035077 -139748395 + L1M1 LINE L1 5213 5472 -2093 2287 108 0 7 chr11 9035077 9035382 -139748090 + AluSq SINE Alu 1 303 -10 9621 146 23 39 chr11 9035382 9035716 -139747756 + L1M1 LINE L1 5472 5742 -1823 2260 119 0 0 chr11 9035800 9036094 -139747378 + AluSg SINE Alu 1 294 -16 1183 110 0 0 chr11 9036094 9036258 -139747214 + L1MA2 LINE L1 6141 6304 0 21 36 0 0 chr11 9036258 9036286 -139747186 + AT_rich Low_complexity Low_complexity 1 28 0 2296 109 3 0 chr11 9036868 9037172 -139746300 - AluSx SINE Alu -7 305 1 2432 46 0 3 chr11 9037417 9037733 -139745739 - AluY SINE Alu 0 315 1 359 210 76 59 chr11 9037818 9037937 -139745535 - L1M4 LINE L1 -1964 4182 4062 2205 87 17 3 chr11 9037958 9038247 -139745225 + AluSx SINE Alu 1 293 -19 4207 139 70 3 chr11 9038248 9038922 -139744550 - Tigger1 DNA MER2_type -1655 763 45 2046 155 0 3 chr11 9038922 9039231 -139744241 + AluSx SINE Alu 1 308 -4 327 154 0 0 chr11 9039270 9039322 -139744150 + Tigger7 DNA MER2_type 5 56 -283 296 164 36 0 chr11 9039343 9039398 -139744074 - Tigger1 DNA MER2_type -2361 57 1 32 44 0 29 chr11 9039419 9039470 -139744002 + AT_rich Low_complexity Low_complexity 1 51 -15 2237 104 3 0 chr11 9039470 9039757 -139743715 - AluSx SINE Alu -24 288 1 32 44 0 29 chr11 9039757 9039773 -139743699 + AT_rich Low_complexity Low_complexity 51 66 0 266 254 62 110 chr11 9040050 9040324 -139743148 - L1P LINE L1 -2705 3441 3155 2519 64 3 0 chr11 9040324 9040620 -139742852 - AluSg SINE Alu -13 297 1 1713 190 7 0 chr11 9040627 9040917 -139742555 - AluJo SINE Alu -20 292 1 266 254 62 110 chr11 9040917 9041134 -139742338 - L1P LINE L1 -2997 3149 2966 907 217 211 29 chr11 9041174 9041290 -139742182 - L1ME3A LINE L1 0 6170 6076 634 201 107 53 chr11 9041290 9041370 -139742102 - MER45A DNA AcHobo -1403 178 104 2441 71 0 0 chr11 9041370 9041674 -139741798 + AluSx SINE Alu 1 304 0 634 201 107 53 chr11 9041674 9041761 -139741711 - MER45A DNA AcHobo -1477 104 1 907 217 211 29 chr11 9041761 9041957 -139741515 - L1ME3A LINE L1 -94 6076 5801 1934 165 0 0 chr11 9041969 9042266 -139741206 + AluSx SINE Alu 1 297 -15 44036 33 21 1 chr11 9042329 9048359 -139735113 + L1PA3 LINE L1 3 6155 0 292 47 0 0 chr11 9048923 9048966 -139734506 + AluY SINE Alu 259 301 0 22 56 0 0 chr11 9049146 9049182 -139734290 + AT_rich Low_complexity Low_complexity 1 36 0 1883 154 11 0 chr11 9049197 9049482 -139733990 + AluJb SINE Alu 1 288 -24 1378 136 0 0 chr11 9049482 9049680 -139733792 + AluSg/x SINE Alu 107 304 -6 878 178 6 30 chr11 9049683 9049852 -139733620 + AluJo/FRAM SINE Alu 137 301 -1 408 141 0 16 chr11 9049856 9049920 -139733552 - MLT1D LTR MaLR -442 63 1 260 179 179 15 chr11 9050001 9050068 -139733404 - L1ME3A LINE L1 -2029 5779 5702 1572 161 3 49 chr11 9050143 9050447 -139733025 + AluJb SINE Alu 1 290 -22 1566 150 135 0 chr11 9050460 9050726 -139732746 + AluSx SINE Alu 1 302 0 781 226 52 0 chr11 9050743 9050898 -139732574 + FRAM SINE Alu 4 166 0 272 309 49 0 chr11 9050901 9050982 -139732490 - L1ME3A LINE L1 -2289 5519 5435 2606 67 0 3 chr11 9050988 9051300 -139732172 - AluY SINE Alu 0 311 1 353 196 20 20 chr11 9051334 9051436 -139732036 - L1ME3A LINE L1 -2360 5448 5347 1986 116 0 0 chr11 9051490 9051748 -139731724 + AluSx SINE Alu 1 258 -54 195 42 0 0 chr11 9051807 9051831 -139731641 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2452 78 3 3 chr11 9052396 9052704 -139730768 + AluSq SINE Alu 1 308 -5 2235 104 0 3 chr11 9052704 9053001 -139730471 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr11 9053810 9053830 -139729642 + (T)n Simple_repeat Simple_repeat 1 20 0 1140 188 76 144 chr11 9054083 9054240 -139729232 - MER4C LTR ERV1 0 465 299 2692 88 119 12 chr11 9054240 9054660 -139728812 - MER4C LTR ERV1 0 465 1 1140 188 76 144 chr11 9054660 9055001 -139728471 - MER4C LTR ERV1 -166 299 1 496 194 39 10 chr11 9055383 9055486 -139727986 - MER45B DNA AcHobo 0 1040 935 1163 108 84 25 chr11 9055486 9055559 -139727913 + L1MB3 LINE L1 5887 5954 -229 2014 100 0 81 chr11 9055559 9055900 -139727572 + AluSx SINE Alu 1 316 0 1163 108 84 25 chr11 9055900 9056028 -139727444 + L1MB3 LINE L1 5954 6101 -82 1107 162 0 0 chr11 9056028 9056201 -139727271 + MER2 DNA MER2_type 1 173 -172 915 132 0 0 chr11 9056296 9056425 -139727047 - FLAM_C SINE Alu -9 134 6 450 138 0 0 chr11 9056429 9056494 -139726978 + MER2 DNA MER2_type 271 335 -10 292 124 106 4 chr11 9056515 9056587 -139726885 + L1MB3 LINE L1 6100 6180 0 999 176 50 31 chr11 9056597 9056681 -139726791 - MER45B DNA AcHobo -643 938 857 2289 100 3 3 chr11 9056681 9056981 -139726491 + AluSx SINE Alu 1 300 -12 999 176 50 31 chr11 9056981 9057118 -139726354 - MER45B DNA AcHobo -724 857 713 1098 265 87 47 chr11 9057308 9057748 -139725724 - MER45C DNA AcHobo -347 606 101 1860 148 45 0 chr11 9057748 9058039 -139725433 + AluJb SINE Alu 1 304 -8 1098 265 87 47 chr11 9058039 9058145 -139725327 - MER45C DNA AcHobo -852 101 1 393 270 35 47 chr11 9059843 9060043 -139723429 + MIR SINE MIR 17 213 -49 23 54 0 0 chr11 9060148 9060185 -139723287 + AT_rich Low_complexity Low_complexity 1 37 0 1048 141 0 40 chr11 9061422 9061561 -139721911 + AluJo SINE Alu 1 133 -179 2262 70 3 33 chr11 9061561 9061863 -139721609 + AluY SINE Alu 1 293 -18 1048 141 0 40 chr11 9061863 9061900 -139721572 + AluJo SINE Alu 133 170 -142 823 138 0 0 chr11 9061954 9062070 -139721402 + FLAM_C SINE Alu 3 118 -15 26 50 0 0 chr11 9062070 9062110 -139721362 + AT_rich Low_complexity Low_complexity 1 40 0 1567 114 5 0 chr11 9062330 9062541 -139720931 - AluJb SINE Alu -20 292 81 1690 166 7 14 chr11 9062544 9062834 -139720638 - AluJb SINE Alu -24 288 1 634 246 66 44 chr11 9064269 9064497 -139718975 + L1ME LINE L1 1 233 -5837 255 327 18 0 chr11 9064517 9064627 -139718845 + L1ME LINE L1 290 401 -5669 2336 93 7 0 chr11 9064628 9064929 -139718543 - AluSx SINE Alu -9 303 1 24 0 0 0 chr11 9064931 9064955 -139718517 + AT_rich Low_complexity Low_complexity 1 24 0 2565 31 0 3 chr11 9064955 9065243 -139718229 - AluY SINE Alu -24 287 1 431 272 0 0 chr11 9065505 9065619 -139717853 + L1ME LINE L1 526 639 -5431 1488 88 0 34 chr11 9065626 9065830 -139717642 + AluSq SINE Alu 1 197 -116 2381 89 3 0 chr11 9065901 9066204 -139717268 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr11 9066283 9066304 -139717168 + AT_rich Low_complexity Low_complexity 1 21 0 469 217 0 0 chr11 9066306 9066398 -139717074 + FLAM_A SINE Alu 2 93 -49 413 125 0 0 chr11 9066415 9066471 -139717001 - AluS SINE Alu -260 58 3 360 205 197 0 chr11 9066474 9066601 -139716871 - L1M4 LINE L1 -3016 3130 2979 2143 123 3 3 chr11 9066610 9066912 -139716560 - AluSx SINE Alu -10 302 1 1030 244 32 86 chr11 9066914 9067096 -139716376 + L1M4 LINE L1 3314 3504 -2642 180 0 0 0 chr11 9067096 9067116 -139716356 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1030 244 32 86 chr11 9067116 9067399 -139716073 + L1M4 LINE L1 3504 3750 -2396 1659 158 25 19 chr11 9067399 9067715 -139715757 + L1MC1 LINE L1 6016 6333 0 1030 244 32 86 chr11 9067715 9067773 -139715699 + L1M4 LINE L1 3750 3810 -2336 446 168 69 20 chr11 9067784 9067885 -139715587 + L1ME2 LINE L1 5419 5524 -638 469 110 27 0 chr11 9067885 9067958 -139715514 - AluSg SINE Alu -6 306 232 1061 198 37 8 chr11 9068066 9068309 -139715163 - AluSg SINE Alu -60 250 1 1320 176 18 116 chr11 9068311 9068513 -139714959 - AluJo SINE Alu -5 297 138 2182 89 3 0 chr11 9068513 9068795 -139714677 + AluSx SINE Alu 30 312 0 1320 176 18 116 chr11 9068795 9068921 -139714551 - AluJo SINE Alu -164 138 1 2004 205 45 2 chr11 9068959 9069379 -139714093 + L1ME2 LINE L1 5513 5950 -214 596 87 0 12 chr11 9069379 9069609 -139713863 + AluSx SINE Alu 1 296 -16 908 191 70 23 chr11 9069610 9069825 -139713647 + L1ME2 LINE L1 5940 6164 0 2372 76 0 13 chr11 9070089 9070393 -139713079 - AluSq SINE Alu -13 300 1 430 86 0 0 chr11 9070393 9070451 -139713021 - L1M LINE L1 -755 5423 5366 * 435 173 21 21 chr11 9070427 9070522 -139712950 - L1ME LINE L1 -589 5575 5481 763 217 50 75 chr11 9070556 9071075 -139712397 - L1ME LINE L1 -663 5501 5000 1367 213 167 35 chr11 9071148 9071603 -139711869 + L1MC4a LINE L1 5384 5898 -1910 1398 108 159 47 chr11 9071634 9071866 -139711606 + AluJb SINE Alu 1 258 -54 434 281 65 7 chr11 9072182 9072335 -139711137 - MIR SINE MIR -3 259 98 1710 184 0 16 chr11 9072809 9073125 -139710347 - AluJo SINE Alu 0 312 2 2401 89 0 16 chr11 9073140 9073455 -139710017 - AluY SINE Alu 0 311 2 2366 80 14 0 chr11 9073689 9073977 -139709495 - AluSp SINE Alu -21 292 1 328 204 0 25 chr11 9074636 9074859 -139708613 + AluJo SINE Alu 11 285 -17 1706 174 28 0 chr11 9074920 9075208 -139708264 - AluSx SINE Alu -14 298 3 2561 60 0 0 chr11 9076773 9077073 -139706399 + AluY SINE Alu 1 300 -11 2232 92 0 49 chr11 9077082 9077222 -139706250 + AluSp SINE Alu 1 146 -167 2378 82 3 22 chr11 9077222 9077538 -139705934 + AluY SINE Alu 1 310 -1 2232 92 0 49 chr11 9077538 9077724 -139705748 + AluSp SINE Alu 146 311 -2 25 31 0 0 chr11 9078339 9078371 -139705101 + AT_rich Low_complexity Low_complexity 1 32 0 2628 59 0 0 chr11 9078400 9078706 -139704766 + AluY SINE Alu 1 306 -5 748 85 85 0 chr11 9078865 9078983 -139704489 - L1MA7 LINE L1 -161 6130 6003 651 204 151 42 chr11 9080846 9081111 -139702361 - L1MC5 LINE L1 -50 7911 7618 974 211 43 100 chr11 9081130 9081590 -139701882 + L1MC4a LINE L1 6194 6627 -1181 195 129 0 0 chr11 9081994 9082025 -139701447 + (A)n Simple_repeat Simple_repeat 1 31 0 492 237 50 14 chr11 9082205 9082344 -139701128 + MER5B DNA MER1_type 35 178 0 2095 117 0 17 chr11 9082474 9082773 -139700699 - AluSx SINE Alu -13 299 6 2064 130 13 7 chr11 9082920 9083221 -139700251 - AluSx SINE Alu -9 303 1 1825 109 4 4 chr11 9083294 9083541 -139699931 + AluSx SINE Alu 45 291 -21 2341 95 0 3 chr11 9083548 9083843 -139699629 + AluSc SINE Alu 1 294 -15 2458 90 0 3 chr11 9083845 9084155 -139699317 + AluSc SINE Alu 1 309 0 21 57 0 0 chr11 9084204 9084239 -139699233 + AT_rich Low_complexity Low_complexity 1 35 0 4147 139 40 83 chr11 9084314 9084560 -139698912 + L1MB7 LINE L1 5148 5403 -781 2130 133 3 3 chr11 9084560 9084868 -139698604 + AluSg SINE Alu 1 308 -2 2176 104 0 36 chr11 9084868 9085177 -139698295 + AluSx SINE Alu 1 298 -14 4147 139 40 83 chr11 9085177 9085689 -139697783 + L1MB7 LINE L1 5402 5934 -250 2117 71 0 4 chr11 9085689 9085942 -139697530 + AluY SINE Alu 1 252 -59 4147 139 40 83 chr11 9085942 9086196 -139697276 + L1MB7 LINE L1 5934 6115 -69 2362 82 7 0 chr11 9086196 9086489 -139696983 - AluY SINE Alu -16 295 1 4147 139 40 83 chr11 9086489 9086547 -139696925 + L1MB7 LINE L1 6115 6174 -10 231 36 0 0 chr11 9086551 9086579 -139696893 + (A)n Simple_repeat Simple_repeat 1 28 0 2481 84 3 0 chr11 9086582 9086893 -139696579 + AluSp SINE Alu 1 312 -1 233 156 89 0 chr11 9087339 9087384 -139696088 + L2 LINE L2 3224 3272 0 1651 98 0 5 chr11 9088163 9088378 -139695094 + AluSg/x SINE Alu 83 296 -16 1794 171 0 13 chr11 9088568 9088867 -139694605 + AluJb SINE Alu 1 295 -17 1031 146 6 0 chr11 9089092 9089256 -139694216 - FAM SINE Alu -10 165 1 277 102 20 20 chr11 9089450 9089499 -139693973 + MIR3 SINE MIR 150 198 -10 245 264 19 0 chr11 9090380 9090433 -139693039 + MIR SINE MIR 48 101 -107 2662 50 0 0 chr11 9090685 9090987 -139692485 + AluY SINE Alu 1 302 -9 2139 120 3 3 chr11 9091285 9091584 -139691888 + AluSx SINE Alu 1 299 -13 2253 116 6 3 chr11 9091918 9092229 -139691243 + AluSx SINE Alu 1 312 0 431 274 65 6 chr11 9092840 9093008 -139690464 + MIR SINE MIR 16 193 -69 637 245 45 35 chr11 9093015 9093215 -139690257 - MIR SINE MIR -1 261 60 2248 79 14 0 chr11 9093355 9093654 -139689818 - AluSq SINE Alu 0 303 1 328 290 60 0 chr11 9093782 9093882 -139689590 - L2 LINE L2 -14 3258 3153 1508 164 11 35 chr11 9094205 9094492 -139688980 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 9094492 9094513 -139688959 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2364 84 0 7 chr11 9095446 9095744 -139687728 + AluSc SINE Alu 1 296 -13 395 195 34 34 chr11 9096145 9096263 -139687209 + L1MB8 LINE L1 6031 6148 -30 1954 116 29 14 chr11 9096270 9096403 -139687069 + AluSq SINE Alu 2 132 -176 2093 133 0 7 chr11 9096403 9096711 -139686761 + AluSx SINE Alu 1 306 -6 1954 116 29 14 chr11 9096711 9096880 -139686592 + AluSq SINE Alu 132 308 0 1538 185 11 11 chr11 9096887 9097168 -139686304 + AluJb SINE Alu 1 281 -31 2296 75 3 10 chr11 9097168 9097462 -139686010 - AluY SINE Alu -18 293 1 673 207 7 22 chr11 9097578 9097713 -139685759 - FLAM_A SINE Alu 0 133 1 1789 178 3 3 chr11 9097785 9098072 -139685400 + AluJb SINE Alu 1 287 -25 1821 136 39 32 chr11 9098233 9098541 -139684931 + AluJo SINE Alu 3 312 0 343 207 82 52 chr11 9098554 9098612 -139684860 - L1ME4a LINE L1 -92 6029 5974 1717 160 23 39 chr11 9098612 9098919 -139684553 - AluJo SINE Alu -10 302 1 343 207 82 52 chr11 9098919 9098995 -139684477 - L1ME4a LINE L1 -147 5974 5891 24 0 0 0 chr11 9100033 9100057 -139683415 + AT_rich Low_complexity Low_complexity 1 24 0 895 211 0 0 chr11 9100560 9100716 -139682756 - AluSg/x SINE Alu -22 290 135 2278 86 10 3 chr11 9101161 9101462 -139682010 + AluY SINE Alu 1 303 -8 190 296 0 0 chr11 9101466 9101510 -139681962 + MIR SINE MIR 57 100 -108 2455 87 0 0 chr11 9101551 9101850 -139681622 + AluSq SINE Alu 1 299 -14 2341 105 0 0 chr11 9101851 9102155 -139681317 + AluY SINE Alu 1 304 -7 35 0 0 0 chr11 9102349 9102384 -139681088 + AT_rich Low_complexity Low_complexity 1 35 0 469 264 110 40 chr11 9102484 9102711 -139680761 - MIR SINE MIR -5 257 15 2051 126 38 0 chr11 9103077 9103370 -139680102 + AluSx SINE Alu 1 304 -8 2642 49 0 0 chr11 9103621 9103925 -139679547 + AluY SINE Alu 1 304 -7 959 173 0 63 chr11 9103928 9104119 -139679353 + AluSg/x SINE Alu 134 312 0 1806 142 0 65 chr11 9104210 9104535 -139678937 + AluSx SINE Alu 1 304 -8 2251 117 0 0 chr11 9104677 9104977 -139678495 + AluSc SINE Alu 1 300 -9 483 215 188 14 chr11 9104982 9105126 -139678346 + AluSg/x SINE Alu 135 303 -7 2150 124 7 3 chr11 9105130 9105436 -139678036 + AluSg SINE Alu 1 307 -3 1984 153 0 0 chr11 9105436 9105717 -139677755 + AluSx SINE Alu 6 286 -26 27 0 0 0 chr11 9105720 9105747 -139677725 + AT_rich Low_complexity Low_complexity 1 27 0 1386 100 116 4 chr11 9105750 9106000 -139677472 - MER33 DNA MER1_type -46 278 1 2420 68 0 0 chr11 9106153 9106446 -139677026 + AluY SINE Alu 1 293 -18 2479 71 0 0 chr11 9106453 9106749 -139676723 + AluY SINE Alu 1 296 -15 2295 112 7 0 chr11 9106821 9107117 -139676355 - AluSx SINE Alu -14 298 1 1646 179 15 4 chr11 9107341 9107614 -139675858 - AluJo SINE Alu -33 279 4 2424 93 7 3 chr11 9107810 9108120 -139675352 - AluSq SINE Alu -2 311 1 815 122 0 95 chr11 9109419 9109566 -139673906 + FLAM_C SINE Alu 1 133 0 450 119 0 30 chr11 9109950 9110017 -139673455 - AluJ/FLAM SINE Alu -242 70 6 451 304 47 0 chr11 9110418 9110566 -139672906 - MIR SINE MIR -14 248 94 2159 102 0 13 chr11 9110598 9110911 -139672561 + AluSg SINE Alu 1 309 -1 2219 97 3 7 chr11 9111177 9111467 -139672005 + AluSc SINE Alu 9 297 -12 686 35 0 76 chr11 9111467 9111612 -139671860 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 34 42 0 0 chr11 9111639 9111687 -139671785 + AT_rich Low_complexity Low_complexity 1 48 0 2173 69 0 11 chr11 9111701 9111977 -139671495 + AluY SINE Alu 38 310 -1 2221 93 14 0 chr11 9112052 9112341 -139671131 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 9112341 9112368 -139671104 + AT_rich Low_complexity Low_complexity 1 27 0 804 229 65 22 chr11 9112380 9112611 -139670861 - MIR SINE MIR 0 262 22 441 0 0 0 chr11 9112768 9112817 -139670655 + (CA)n Simple_repeat Simple_repeat 2 50 0 1969 122 14 37 chr11 9112825 9113121 -139670351 - AluSx SINE Alu -21 291 3 1347 211 26 68 chr11 9113151 9113459 -139670013 + AluJo SINE Alu 1 295 -7 1667 149 54 17 chr11 9113559 9113855 -139669617 + AluJo SINE Alu 1 307 -5 281 231 0 0 chr11 9113917 9113982 -139669490 - L3 LINE CR1 -175 1402 1338 2384 83 3 3 chr11 9115324 9115624 -139667848 - AluSp SINE Alu -13 300 1 25 31 0 0 chr11 9115794 9115826 -139667646 + AT_rich Low_complexity Low_complexity 1 32 0 2264 101 0 3 chr11 9116181 9116478 -139666994 + AluSg SINE Alu 1 296 -14 2024 158 3 0 chr11 9116504 9116815 -139666657 + AluJb SINE Alu 1 312 0 2238 100 3 17 chr11 9116880 9117180 -139666292 + AluSq SINE Alu 1 296 -17 1365 270 99 17 chr11 9117753 9118514 -139664958 + L2 LINE L2 2488 3313 0 1111 138 0 13 chr11 9118877 9119036 -139664436 + AluSx SINE Alu 1 157 -155 2202 105 0 32 chr11 9119193 9119507 -139663965 + AluSq SINE Alu 1 304 -9 2186 117 7 0 chr11 9119579 9119869 -139663603 - AluSx SINE Alu -18 294 3 724 171 85 0 chr11 9119892 9120021 -139663451 - FRAM SINE Alu -36 140 1 2090 122 10 7 chr11 9120856 9121152 -139662320 - AluSg SINE Alu -8 302 6 1959 139 10 7 chr11 9121191 9121485 -139661987 + AluSq SINE Alu 5 299 -14 2304 80 6 6 chr11 9121530 9121841 -139661631 + AluY SINE Alu 1 311 0 1484 171 6 70 chr11 9121982 9122128 -139661344 + AluJb SINE Alu 1 155 -168 2455 91 0 0 chr11 9122128 9122437 -139661035 + AluSq SINE Alu 2 310 -3 2130 111 35 0 chr11 9122440 9122728 -139660744 + AluSq SINE Alu 1 298 -15 1484 171 6 70 chr11 9122728 9122920 -139660552 + AluJb SINE Alu 157 323 0 22 35 0 0 chr11 9122945 9122974 -139660498 + AT_rich Low_complexity Low_complexity 1 29 0 1574 77 115 51 chr11 9122977 9123235 -139660237 + AluY SINE Alu 37 309 0 2396 92 3 0 chr11 9123241 9123546 -139659926 + AluSg SINE Alu 1 306 -4 2193 82 0 11 chr11 9123792 9124071 -139659401 - AluSg SINE Alu -20 290 15 225 0 0 0 chr11 9124101 9124126 -139659346 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2207 104 0 0 chr11 9124126 9124406 -139659066 - AluSx SINE Alu -32 280 1 1075 130 12 12 chr11 9124421 9124583 -139658889 + AluJb SINE Alu 129 290 -22 378 74 0 0 chr11 9124601 9124655 -139658817 + (CA)n Simple_repeat Simple_repeat 2 55 0 271 183 103 63 chr11 9124656 9124782 -139658690 + L1MC4a LINE L1 5781 5911 -1897 21 0 0 0 chr11 9124895 9124916 -139658556 + AT_rich Low_complexity Low_complexity 1 21 0 3369 196 86 10 chr11 9125026 9125837 -139657635 + L1MB5 LINE L1 5227 6106 -68 2407 76 0 3 chr11 9125844 9126135 -139657337 - AluSq SINE Alu -21 292 3 892 179 48 43 chr11 9126158 9126365 -139657107 - AluJo SINE Alu -17 295 88 358 104 30 30 chr11 9126367 9126434 -139657038 + L1MB8 LINE L1 6112 6178 0 2340 92 0 3 chr11 9129186 9129492 -139653980 - AluSg SINE Alu -5 305 1 1247 60 0 0 chr11 9129603 9129754 -139653718 + AluY SINE Alu 159 309 -2 306 71 24 48 chr11 9130541 9130625 -139652847 + (TA)n Simple_repeat Simple_repeat 1 82 0 2109 86 46 0 chr11 9130669 9130949 -139652523 + AluSg SINE Alu 1 293 -17 2085 143 3 13 chr11 9130949 9131085 -139652387 + AluSq SINE Alu 2 138 -165 2095 99 0 65 chr11 9131085 9131219 -139652253 + AluY SINE Alu 1 142 -169 2339 107 0 0 chr11 9131219 9131528 -139651944 + AluSx SINE Alu 1 309 -3 2095 99 0 65 chr11 9131528 9131715 -139651757 + AluY SINE Alu 142 301 -10 2085 143 3 13 chr11 9131715 9131879 -139651593 + AluSq SINE Alu 138 298 -5 2255 64 10 14 chr11 9131886 9132228 -139651244 + AluY SINE Alu 2 296 -15 3771 184 75 33 chr11 9132234 9132855 -139650617 - L1MB7 LINE L1 -5 6179 5586 2341 50 11 0 chr11 9132855 9133132 -139650340 - AluY SINE Alu -12 299 20 3771 184 75 33 chr11 9133132 9133172 -139650300 - L1MB7 LINE L1 -598 5586 5549 1698 153 32 7 chr11 9133172 9133453 -139650019 - AluSx SINE Alu -24 288 1 3771 184 75 33 chr11 9133453 9133742 -139649730 - L1MB7 LINE L1 -635 5549 5274 2126 132 0 16 chr11 9133742 9133874 -139649598 + AluSx SINE Alu 5 138 -174 2156 121 3 0 chr11 9133874 9134172 -139649300 + AluSx SINE Alu 1 299 -13 2126 132 0 16 chr11 9134172 9134341 -139649131 + AluSx SINE Alu 138 301 -11 2109 99 0 33 chr11 9134341 9134476 -139648996 + AluSc SINE Alu 1 139 -170 3771 184 75 33 chr11 9134342 9134476 -139648996 - L1MB7 LINE L1 -910 5274 5147 2427 89 3 0 chr11 9134476 9134780 -139648692 + AluSp SINE Alu 1 305 -8 3771 184 75 33 chr11 9134780 9135068 -139648404 - L1MB7 LINE L1 -1037 5147 5039 2109 99 0 33 chr11 9134780 9134946 -139648526 + AluSc SINE Alu 139 292 -17 1689 165 21 10 chr11 9135068 9135359 -139648113 - AluJb SINE Alu -18 294 1 3771 184 75 33 chr11 9135359 9135622 -139647850 - L1MB7 LINE L1 -1145 5039 4789 2034 120 0 24 chr11 9135623 9135845 -139647627 - AluSx SINE Alu 0 311 97 4750 170 71 48 chr11 9135845 9136892 -139646580 + MER11C LTR ERVK 1 1071 0 2034 120 0 24 chr11 9136892 9136987 -139646485 - AluSx SINE Alu -214 97 1 2028 214 133 24 chr11 9137038 9137315 -139646157 - L1MB7 LINE L1 -1446 4700 4455 2023 100 23 27 chr11 9137315 9137616 -139645856 - AluSc SINE Alu -9 300 1 2028 214 133 24 chr11 9137616 9137675 -139645797 - L1MB7 LINE L1 -1691 4455 4404 2096 105 17 7 chr11 9137675 9137970 -139645502 - AluSq SINE Alu -15 298 1 2028 214 133 24 chr11 9137970 9138023 -139645449 - L1MB7 LINE L1 -1742 4404 4358 1869 113 94 0 chr11 9138023 9138298 -139645174 - AluSx SINE Alu -11 301 1 2028 214 133 24 chr11 9138298 9138574 -139644898 - L1MB7 LINE L1 -1788 4358 3960 2221 117 0 0 chr11 9138623 9138923 -139644549 + AluSp SINE Alu 1 300 -13 2228 112 3 0 chr11 9139000 9139295 -139644177 - AluSx SINE Alu -16 296 1 840 156 8 0 chr11 9139303 9139425 -139644047 - FLAM_C SINE Alu -10 123 1 2165 120 3 0 chr11 9139481 9139781 -139643691 + AluSg SINE Alu 1 301 -9 248 355 40 0 chr11 9139892 9140016 -139643456 + MLT1J LTR MaLR 92 220 -291 21 0 0 0 chr11 9140625 9140646 -139642826 + AT_rich Low_complexity Low_complexity 1 21 0 1823 101 0 16 chr11 9143770 9144027 -139639445 - AluSx SINE Alu -11 301 49 298 191 15 29 chr11 9144027 9144095 -139639377 + AluSg SINE Alu 63 129 -171 304 233 11 40 chr11 9144146 9144322 -139639150 + C-rich Low_complexity Low_complexity 4 174 0 1462 106 5 10 chr11 9144565 9144763 -139638709 + AluSg/x SINE Alu 68 264 -46 37 0 0 0 chr11 9144775 9144812 -139638660 + AT_rich Low_complexity Low_complexity 1 37 0 2243 112 0 10 chr11 9144862 9145174 -139638298 - AluSx SINE Alu -3 309 1 1787 175 11 0 chr11 9145261 9145546 -139637926 - AluJb SINE Alu -24 288 1 2484 60 7 0 chr11 9145557 9145856 -139637616 - AluSp SINE Alu -12 301 1 1089 141 6 0 chr11 9145947 9146110 -139637362 - AluSp SINE Alu -14 299 136 1999 154 3 3 chr11 9146121 9146426 -139637046 - AluSx SINE Alu -7 305 1 2219 107 0 0 chr11 9146454 9146772 -139636700 + AluY SINE Alu 1 311 0 22 70 0 0 chr11 9146879 9146922 -139636550 + AT_rich Low_complexity Low_complexity 1 43 0 2302 87 10 13 chr11 9149295 9149604 -139633868 + AluSc SINE Alu 2 309 0 202 211 88 0 chr11 9149669 9149726 -139633746 - MIR SINE MIR -27 235 174 2253 113 0 10 chr11 9149751 9150062 -139633410 + AluSq SINE Alu 1 308 -5 649 188 0 0 chr11 9150064 9150165 -139633307 - FLAM_A SINE Alu -32 110 10 192 284 30 15 chr11 9150349 9150416 -139633056 - L2 LINE L2 -12 3301 3234 2226 105 0 7 chr11 9150528 9150822 -139632650 - AluSg SINE Alu -18 292 1 198 91 0 0 chr11 9150886 9150919 -139632553 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2484 57 10 19 chr11 9151598 9151912 -139631560 + AluY SINE Alu 1 311 0 2086 125 3 6 chr11 9151965 9152278 -139631194 + AluSx SINE Alu 1 312 0 834 161 73 0 chr11 9152293 9152430 -139631042 + AluSg/x SINE Alu 130 276 -36 224 39 39 39 chr11 9152437 9152489 -139630983 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr11 9153481 9153505 -139629967 + AT_rich Low_complexity Low_complexity 1 24 0 1371 197 37 54 chr11 9154322 9154617 -139628855 - AluJo SINE Alu -12 290 1 2456 77 3 0 chr11 9154914 9155212 -139628260 + AluSp SINE Alu 1 299 -14 2388 76 13 3 chr11 9155850 9156152 -139627320 + AluSq SINE Alu 1 305 -8 2187 109 3 0 chr11 9156646 9156940 -139626532 + AluSx SINE Alu 6 300 -12 2326 97 0 3 chr11 9157142 9157450 -139626022 - AluSx SINE Alu -5 307 1 423 109 0 0 chr11 9157621 9157676 -139625796 + Alu SINE Alu 238 292 -17 621 172 62 0 chr11 9157714 9157842 -139625630 + L1MB3 LINE L1 6041 6176 -7 224 308 175 17 chr11 9158433 9158553 -139624919 + MIR SINE MIR 75 213 -49 202 296 217 9 chr11 9158718 9158833 -139624639 + MIR SINE MIR 12 150 -112 1123 152 173 12 chr11 9158928 9159215 -139624257 + MER1B DNA MER1_type 1 338 -1 28 0 0 0 chr11 9159610 9159638 -139623834 + AT_rich Low_complexity Low_complexity 1 28 0 1432 181 55 15 chr11 9159638 9159909 -139623563 - AluJo SINE Alu -30 282 1 833 115 0 0 chr11 9161002 9161115 -139622357 - AluSg/x SINE Alu -10 299 187 832 237 10 5 chr11 9161246 9161444 -139622028 + L1MD3 LINE L1 7719 7917 -78 2147 130 3 0 chr11 9161582 9161883 -139621589 + AluSx SINE Alu 1 302 -10 363 82 16 0 chr11 9161930 9161991 -139621481 + L1MB8 LINE L1 5268 5329 -817 1543 106 128 0 chr11 9161992 9162218 -139621254 + AluSq SINE Alu 1 255 -58 929 142 43 6 chr11 9162229 9162391 -139621081 + AluSg/x SINE Alu 138 305 -5 2300 192 143 14 chr11 9162408 9163066 -139620406 + L1MB8 LINE L1 5324 6135 -49 2139 99 13 35 chr11 9163069 9163245 -139620227 - AluSx SINE Alu -6 306 139 2417 76 0 13 chr11 9163245 9163547 -139619925 - AluY SINE Alu -12 299 2 2139 99 13 35 chr11 9163547 9163683 -139619789 - AluSx SINE Alu -173 139 1 811 165 0 15 chr11 9163685 9163818 -139619654 - FLAM_C SINE Alu -12 131 1 2097 116 7 3 chr11 9164387 9164681 -139618791 - AluSx SINE Alu -17 295 1 867 153 0 29 chr11 9166339 9166476 -139616996 - FLAM_C SINE Alu 0 133 1 545 211 57 171 chr11 9166628 9166844 -139616628 + Charlie1a DNA MER1_type 11 250 -2511 330 26 0 0 chr11 9166844 9166883 -139616589 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 545 211 57 171 chr11 9166883 9166899 -139616573 + Charlie1a DNA MER1_type 250 266 -2495 1899 98 4 0 chr11 9166899 9167144 -139616328 - AluSp SINE Alu -67 246 1 545 211 57 171 chr11 9167144 9167185 -139616287 + Charlie1a DNA MER1_type 266 252 -2509 2259 95 0 0 chr11 9167185 9167479 -139615993 - AluY SINE Alu -17 294 1 545 211 57 171 chr11 9167479 9167502 -139615970 + Charlie1a DNA MER1_type 251 275 -1180 2275 70 0 0 chr11 9167502 9167773 -139615699 - AluSg SINE Alu -18 292 22 510 232 18 0 chr11 9167776 9167881 -139615591 + Charlie1a DNA MER1_type 547 656 -2105 2047 101 4 11 chr11 9167881 9168157 -139615315 + AluSp SINE Alu 1 274 -39 598 217 145 6 chr11 9168164 9168330 -139615142 + Charlie1a DNA MER1_type 1264 1452 -3 1820 80 121 15 chr11 9168836 9169100 -139614372 - AluY SINE Alu -19 292 1 338 306 83 6 chr11 9169328 9169508 -139613964 + L1ME LINE L1 5625 5818 -303 216 0 0 0 chr11 9169554 9169578 -139613894 + (TA)n Simple_repeat Simple_repeat 2 25 0 2458 77 0 0 chr11 9169578 9169876 -139613596 - AluSc SINE Alu -11 298 1 1632 219 215 4 chr11 9169911 9170428 -139613044 + L1ME2 LINE L1 5502 6127 -37 2161 106 0 3 chr11 9170775 9171079 -139612393 + AluSg1 SINE Alu 1 303 0 2435 94 0 0 chr11 9171131 9171440 -139612032 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr11 9171453 9171476 -139611996 + AT_rich Low_complexity Low_complexity 1 23 0 473 174 43 0 chr11 9171499 9171591 -139611881 + L1MB7 LINE L1 6080 6175 -9 676 248 44 60 chr11 9172235 9172550 -139610922 - L1M4 LINE L1 -2040 4106 3797 613 153 194 69 chr11 9172955 9173099 -139610373 - FRAM SINE Alu -4 162 1 2583 64 0 0 chr11 9173276 9173587 -139609885 - AluY SINE Alu 0 311 1 2131 113 0 13 chr11 9173806 9174108 -139609364 - AluSp SINE Alu -15 298 1 2173 70 11 0 chr11 9174313 9174586 -139608886 + AluSg SINE Alu 31 306 -4 440 259 133 14 chr11 9175173 9175316 -139608156 - MIR SINE MIR -102 160 1 292 225 28 14 chr11 9175549 9175620 -139607852 - MIR SINE MIR -114 148 77 39 22 0 0 chr11 9175674 9175720 -139607752 + AT_rich Low_complexity Low_complexity 1 46 0 478 114 29 0 chr11 9175931 9176001 -139607471 + AluS SINE Alu 225 296 -15 2368 52 42 0 chr11 9176024 9176313 -139607159 + AluY SINE Alu 1 301 -10 1788 138 10 52 chr11 9176362 9176667 -139606805 - AluJb SINE Alu -20 292 1 1216 218 45 8 chr11 9379151 9379417 -139404055 - AluJo SINE Alu -36 276 1 2450 53 3 17 chr11 9379448 9379749 -139403723 - AluY SINE Alu -14 297 1 1381 183 122 0 chr11 9379751 9380013 -139403459 - AluJo SINE Alu -7 295 2 646 93 131 19 chr11 9380124 9380231 -139403241 + MER21A LTR ERV1 15 133 -798 2088 123 0 3 chr11 9380231 9380515 -139402957 + AluSx SINE Alu 1 283 -29 495 227 7 27 chr11 9380611 9380761 -139402711 + MER39 LTR ERV1 219 365 -342 189 0 0 0 chr11 9381183 9381204 -139402268 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9381218 9381432 -139402040 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9381432 9381724 -139401748 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9381963 9382222 -139401250 - AluSq SINE Alu -53 260 1 1785 170 3 14 chr11 9382419 9382713 -139400759 + AluJo SINE Alu 9 299 -13 534 98 0 0 chr11 9382733 9382815 -139400657 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 200 224 15 0 chr11 9383474 9383541 -139399931 + CT-rich Low_complexity Low_complexity 1 68 0 237 277 128 69 chr11 9383789 9383977 -139399495 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9383996 9384302 -139399170 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9384324 9384650 -139398822 + L2 LINE L2 1728 2088 -1226 3270 146 2 28 chr11 9384671 9385205 -139398267 + MER1A DNA MER1_type 1 520 -9 2348 93 30 0 chr11 9385332 9385634 -139397838 + AluSx SINE Alu 1 311 -1 671 254 98 23 chr11 9386026 9386290 -139397182 + L2 LINE L2 2915 3198 -115 493 49 0 0 chr11 9386389 9386450 -139397022 + AluY SINE Alu 2 62 -256 1315 109 0 6 chr11 9386450 9386624 -139396848 + AluSg/x SINE Alu 95 267 -43 626 170 0 0 chr11 9386627 9386721 -139396751 + AluSg/x SINE Alu 72 165 -145 314 327 19 19 chr11 9387115 9387222 -139396250 - MLT1B-int LTR MaLR -509 862 756 1704 147 25 39 chr11 9387243 9387529 -139395943 - AluJo SINE Alu -30 282 1 783 186 0 0 chr11 9387710 9387839 -139395633 - FLAM_C SINE Alu -4 129 1 673 183 8 0 chr11 9388174 9388300 -139395172 - FLAM_A SINE Alu -5 137 11 225 333 0 0 chr11 9388314 9388392 -139395080 - MLT1B-int LTR MaLR -961 410 333 457 111 0 0 chr11 9388394 9388457 -139395015 - MLT1B LTR MaLR 0 390 328 1779 165 0 20 chr11 9388759 9389056 -139394416 - AluJo SINE Alu -21 291 1 357 312 16 24 chr11 9389224 9389349 -139394123 - L2 LINE L2 -1 3271 3148 2091 133 0 13 chr11 9390061 9390398 -139393074 - AluSx SINE Alu 0 312 1 612 144 17 0 chr11 9391007 9391180 -139392292 + (TA)n Simple_repeat Simple_repeat 1 176 0 383 154 51 29 chr11 9391181 9391356 -139392116 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr11 9391356 9391387 -139392085 + AT_rich Low_complexity Low_complexity 1 31 0 198 103 23 58 chr11 9391387 9391474 -139391998 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 373 192 92 67 chr11 9391477 9391597 -139391875 + L1MCa LINE L1 1952 2074 -4352 1604 174 30 33 chr11 9391722 9392021 -139391451 - AluJo SINE Alu -14 298 1 3229 157 33 117 chr11 9392288 9393052 -139390420 - MER21A LTR ERV1 -19 912 213 2436 84 3 0 chr11 9394004 9394314 -139389158 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9394315 9394616 -139388856 - AluSg1 SINE Alu -8 301 1 1997 150 0 0 chr11 9395490 9395776 -139387696 - AluJo SINE Alu -26 286 1 1664 164 27 14 chr11 9395961 9396254 -139387218 - AluJb SINE Alu -5 307 11 299 328 51 69 chr11 9396431 9396763 -139386709 - L2 LINE L2 -22 3250 2925 318 50 0 0 chr11 9397813 9397853 -139385619 + (CA)n Simple_repeat Simple_repeat 1 40 0 1958 132 16 13 chr11 9397988 9398291 -139385181 - AluSq SINE Alu -1 312 9 442 257 9 0 chr11 9398486 9398591 -139384881 - L2 LINE L2 -507 2807 2702 1017 147 0 85 chr11 9398628 9398805 -139384667 - AluJo SINE Alu -148 164 3 1355 144 5 0 chr11 9398825 9399026 -139384446 + AluSg/x SINE Alu 87 288 -24 342 98 0 0 chr11 9399027 9399078 -139384394 + (TG)n Simple_repeat Simple_repeat 1 51 0 445 295 58 31 chr11 9399221 9399546 -139383926 - L1MEd LINE L1 -4908 1211 878 488 290 141 19 chr11 9400382 9400644 -139382828 + L2 LINE L2 1832 2125 -1189 716 169 0 0 chr11 9400652 9400770 -139382702 + FLAM_C SINE Alu 7 124 -19 24 0 0 0 chr11 9400772 9400796 -139382676 + AT_rich Low_complexity Low_complexity 1 24 0 829 254 33 12 chr11 9400824 9401064 -139382408 + L2 LINE L2 2159 2403 -911 607 120 11 0 chr11 9401401 9401493 -139381979 - AluS SINE Alu -216 97 5 862 154 0 0 chr11 9401550 9401673 -139381799 + FLAM_C SINE Alu 3 125 -18 2293 219 70 10 chr11 9401728 9402239 -139381233 - MLT1F LTR MaLR 0 542 1 182 162 27 0 chr11 9402295 9402332 -139381140 + MIR SINE MIR 117 154 -108 216 111 0 0 chr11 9402347 9402383 -139381089 + (T)n Simple_repeat Simple_repeat 1 36 0 2209 105 7 3 chr11 9402948 9403244 -139380228 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 9403246 9403268 -139380204 + AT_rich Low_complexity Low_complexity 1 22 0 1127 288 65 47 chr11 9403381 9404104 -139379368 + MLT2F LTR ERVL 10 626 -2 1617 49 0 0 chr11 9404150 9404333 -139379139 + AluY SINE Alu 1 183 -128 1343 184 39 12 chr11 9404434 9404690 -139378782 - AluJo SINE Alu -49 263 1 2308 81 0 3 chr11 9404918 9405201 -139378271 - AluSx SINE Alu -30 282 1 207 0 0 0 chr11 9407852 9407875 -139375597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2409 100 3 0 chr11 9408127 9408437 -139375035 - AluSx SINE Alu -1 311 1 1570 108 0 5 chr11 9408608 9408820 -139374652 + AluSg/x SINE Alu 88 298 -14 21 36 0 0 chr11 9410554 9410582 -139372890 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 9410653 9410812 -139372660 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 9410812 9410890 -139372582 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 9411019 9411052 -139372420 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 9411585 9411886 -139371586 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 9412907 9413142 -139370330 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 9413657 9413750 -139369722 + MER5B DNA MER1_type 24 116 -62 1778 129 65 14 chr11 9413767 9414045 -139369427 - AluSx SINE Alu -12 300 9 2275 108 3 3 chr11 9414190 9414495 -139368977 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9414636 9414781 -139368691 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9414814 9414911 -139368561 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9415007 9415178 -139368294 + AluSg/x SINE Alu 113 286 -24 577 151 0 0 chr11 9415885 9415971 -139367501 - AluJ/FLAM SINE Alu -225 87 2 3956 171 4 19 chr11 9416071 9416101 -139367371 + L1M4 LINE L1 3239 3268 -2878 1702 167 14 3 chr11 9416101 9416395 -139367077 + AluJb SINE Alu 3 299 -13 3956 171 4 19 chr11 9416395 9417099 -139366373 + L1M4 LINE L1 3268 3962 -2184 300 247 74 39 chr11 9417506 9417737 -139365735 + L1MEc LINE L1 1428 1666 -4730 22 70 0 0 chr11 9417925 9417968 -139365504 + AT_rich Low_complexity Low_complexity 1 43 0 427 305 60 54 chr11 9418017 9418847 -139364625 + L1M4 LINE L1 4335 5169 -977 873 136 0 0 chr11 9418868 9418986 -139364486 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 9418986 9419016 -139364456 + AT_rich Low_complexity Low_complexity 1 30 0 2156 125 3 0 chr11 9419147 9419451 -139364021 + AluSx SINE Alu 3 307 -5 2368 115 0 0 chr11 9419554 9419858 -139363614 + AluSx SINE Alu 1 304 -8 2168 123 0 3 chr11 9420269 9420562 -139362910 - AluSg SINE Alu -18 292 1 1285 127 0 11 chr11 9420573 9420762 -139362710 - AluSx SINE Alu -14 298 112 650 234 135 35 chr11 9421127 9421209 -139362263 - L2 LINE L2 -266 3047 2975 1697 193 0 16 chr11 9421209 9421520 -139361952 - AluJb SINE Alu -6 306 1 650 234 135 35 chr11 9421520 9421838 -139361634 - L2 LINE L2 -338 2975 2596 2210 110 3 0 chr11 9421897 9422197 -139361275 - AluSp SINE Alu -12 301 1 1036 76 15 0 chr11 9422197 9422328 -139361144 - AluSx SINE Alu -175 137 5 595 242 124 60 chr11 9422341 9422655 -139360817 - L2 LINE L2 -797 2517 2184 * 1995 235 113 32 chr11 9422653 9423161 -139360311 + L2 LINE L2 2247 2826 -487 2375 94 7 3 chr11 9423161 9423469 -139360003 + AluSc SINE Alu 1 309 0 1995 235 113 32 chr11 9423469 9423677 -139359795 + L2 LINE L2 2826 3016 -297 195 139 0 0 chr11 9423817 9423853 -139359619 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2178 107 31 0 chr11 9423944 9424234 -139359238 + AluSx SINE Alu 1 299 -13 1755 180 27 3 chr11 9425093 9425393 -139358079 - AluJb SINE Alu -5 307 1 336 203 16 0 chr11 9425507 9425571 -139357901 + MER58 DNA MER1_type 2356 2420 0 510 280 56 36 chr11 9425874 9426225 -139357247 + L2 LINE L2 2889 3306 -7 977 311 107 28 chr11 9426416 9427088 -139356384 - L2 LINE L2 -1480 1834 1080 893 200 16 5 chr11 9427088 9427273 -139356199 + MER5A DNA MER1_type 1 187 -2 977 311 107 28 chr11 9427273 9427447 -139356025 - L2 LINE L2 -2234 1080 921 1715 221 21 18 chr11 9427454 9427834 -139355638 - MLT1E2 LTR MaLR 0 626 246 889 141 0 28 chr11 9427836 9427978 -139355494 - FLAM_C SINE Alu -5 138 1 1031 227 8 25 chr11 9428027 9428269 -139355203 - MLT1E2 LTR MaLR -388 238 1 387 293 64 16 chr11 9428340 9428528 -139354944 - L2 LINE L2 -2498 816 620 199 310 0 0 chr11 9428552 9428623 -139354849 + MER5A DNA MER1_type 36 106 -83 24 53 0 0 chr11 9428828 9428866 -139354606 + AT_rich Low_complexity Low_complexity 1 38 0 845 156 0 0 chr11 9428866 9428988 -139354484 - FLAM_C SINE Alu -16 127 6 4315 121 15 126 chr11 9429066 9430619 -139352853 + pTR5 LTR ERV1 741 2606 0 836 222 233 15 chr11 9430619 9431022 -139352450 + Charlie2b DNA MER1_type 176 666 -2116 811 208 49 70 chr11 9431112 9431279 -139352193 + Charlie2a DNA MER1_type 1528 1688 -1174 830 176 0 0 chr11 9431279 9431410 -139352062 + FLAM_C SINE Alu 3 133 0 811 208 49 70 chr11 9431410 9431526 -139351946 + Charlie2a DNA MER1_type 1688 1805 -1057 455 69 0 0 chr11 9431526 9431584 -139351888 - Alu SINE Alu -14 295 238 493 232 24 65 chr11 9431688 9431802 -139351670 + L2 LINE L2 2233 2339 -975 1507 177 10 20 chr11 9431802 9432096 -139351376 + AluJb SINE Alu 1 291 -21 493 232 24 65 chr11 9432096 9432149 -139351323 + L2 LINE L2 2339 2393 -921 2058 137 0 0 chr11 9432188 9432495 -139350977 - AluSx SINE Alu -5 307 1 1516 232 60 64 chr11 9432497 9432831 -139350641 + L2 LINE L2 2784 3116 -197 1436 179 32 21 chr11 9432831 9433116 -139350356 - AluJo SINE Alu -24 288 1 1516 232 60 64 chr11 9433116 9433312 -139350160 + L2 LINE L2 3116 3311 -2 488 172 0 50 chr11 9433747 9433846 -139349626 + FLAM SINE Alu 38 131 -12 22 0 0 0 chr11 9433846 9433868 -139349604 + AT_rich Low_complexity Low_complexity 1 22 0 2187 95 3 0 chr11 9433875 9434179 -139349293 + AluSp SINE Alu 1 305 -8 261 269 192 10 chr11 9434377 9434481 -139348991 - MLT1K LTR MaLR -355 233 111 240 266 203 28 chr11 9434937 9435080 -139348392 + L2 LINE L2 331 498 -2816 503 305 40 34 chr11 9435107 9435432 -139348040 + L2 LINE L2 603 929 -2385 509 386 92 16 chr11 9436050 9436560 -139346912 + L2 LINE L2 1831 2379 -935 2184 89 23 3 chr11 9436584 9436887 -139346585 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr11 9437013 9437041 -139346431 + AT_rich Low_complexity Low_complexity 1 28 0 2157 95 0 0 chr11 9437262 9437573 -139345899 + AluSx SINE Alu 1 311 0 1200 113 0 11 chr11 9437577 9437763 -139345709 + AluSg/x SINE Alu 129 312 0 2131 74 14 7 chr11 9438645 9438930 -139344542 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 9438933 9438962 -139344510 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 317 173 0 0 chr11 9439100 9439152 -139344320 - Tigger2a DNA MER2_type -67 377 326 729 138 9 0 chr11 9439156 9439272 -139344200 + L1 LINE L1 4699 4815 -1331 1669 112 84 21 chr11 9439282 9439568 -139343904 - Tigger2a DNA MER2_type -130 304 1 4514 179 32 34 chr11 9439810 9441338 -139342134 - L1MB2 LINE L1 -1 6170 4640 1866 117 29 0 chr11 9441338 9441611 -139341861 - AluSq SINE Alu -31 282 2 4514 179 32 34 chr11 9441611 9441765 -139341707 - L1MB2 LINE L1 -1531 4640 4501 2337 93 3 0 chr11 9441765 9442076 -139341396 - AluSp SINE Alu -1 312 1 4514 179 32 34 chr11 9442076 9442180 -139341292 - L1MB2 LINE L1 -1670 4501 4398 593 194 0 9 chr11 9442199 9442307 -139341165 - FLAM_C SINE Alu -12 131 25 2146 162 25 10 chr11 9442318 9442725 -139340747 - L1MB2 LINE L1 -1735 4411 3999 2309 82 3 0 chr11 9442852 9443155 -139340317 - AluSg SINE Alu -6 304 1 190 250 0 0 chr11 9443673 9443713 -139339759 - MIR SINE MIR -64 198 159 370 282 117 28 chr11 9444117 9444330 -139339142 + L2 LINE L2 2829 3060 -212 342 0 0 0 chr11 9444707 9444745 -139338727 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 940 236 64 130 chr11 9444881 9444939 -139338533 - MLT1G LTR MaLR -7 583 523 2175 101 0 0 chr11 9444939 9445237 -139338235 - AluSg1 SINE Alu -11 298 1 940 236 64 130 chr11 9445237 9445741 -139337731 - MLT1G LTR MaLR -67 523 58 626 207 52 0 chr11 9445934 9446050 -139337422 - MER68 LTR ERV1 0 562 441 1735 150 11 0 chr11 9446050 9446324 -139337148 + AluSx SINE Alu 1 277 -35 363 23 0 0 chr11 9446355 9446399 -139337073 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1033 171 0 0 chr11 9446420 9446590 -139336882 - AluJo/FRAM SINE Alu -8 304 135 1504 193 24 0 chr11 9446591 9446887 -139336585 - AluJb SINE Alu -9 303 1 358 85 34 34 chr11 9446888 9446947 -139336525 - MER68 LTR ERV1 -503 59 1 2194 106 3 3 chr11 9447021 9447332 -139336140 + AluSx SINE Alu 1 311 -1 946 132 7 13 chr11 9447346 9447498 -139335974 + AluSq/x SINE Alu 1 151 -161 956 158 0 0 chr11 9447599 9447751 -139335721 + AluJb SINE Alu 157 308 -4 2097 86 7 13 chr11 9448102 9448403 -139335069 - AluSg SINE Alu -11 299 1 757 132 0 47 chr11 9448441 9448570 -139334902 - FRAM SINE Alu -22 154 32 203 313 31 21 chr11 9448596 9448692 -139334780 + L2 LINE L2 2988 3084 -188 993 285 115 26 chr11 9448876 9449381 -139334091 - MLT1K LTR MaLR -12 576 27 1610 131 7 53 chr11 9449484 9449766 -139333706 + AluJo SINE Alu 31 299 -13 2242 113 0 0 chr11 9450567 9450878 -139332594 - AluSx SINE Alu -1 311 1 1914 140 7 0 chr11 9451748 9452041 -139331431 - AluSx SINE Alu -13 299 5 464 289 134 30 chr11 9452041 9452242 -139331230 + MIR SINE MIR 30 251 -11 306 378 30 22 chr11 9452321 9452456 -139331016 - L3b LINE CR1 -108 1475 1340 2219 90 0 29 chr11 9452491 9452802 -139330670 + AluSx SINE Alu 1 302 -10 195 232 12 98 chr11 9452906 9452988 -139330484 - L2 LINE L2 -11 3261 3187 889 260 64 35 chr11 9453422 9453734 -139329738 + MER102b DNA MER1_type 21 341 0 2130 103 0 0 chr11 9453986 9454276 -139329196 - AluSx SINE Alu -22 290 1 2011 128 27 0 chr11 9454440 9454737 -139328735 - AluSx SINE Alu -7 305 1 256 200 0 18 chr11 9454796 9454851 -139328621 - MLT1L LTR MaLR -16 599 546 1072 169 0 76 chr11 9454851 9455087 -139328385 - AluJb SINE Alu -9 303 86 302 146 0 0 chr11 9455087 9455135 -139328337 - MLT1L LTR MaLR -65 550 503 608 213 47 0 chr11 9455316 9455443 -139328029 - MLT1L LTR MaLR -341 274 142 1388 154 33 18 chr11 9455903 9456176 -139327296 - L1MB8 LINE L1 -2 6176 5900 1473 87 0 0 chr11 9456288 9456484 -139326988 + AluSg/x SINE Alu 117 312 0 225 178 0 0 chr11 9456657 9456702 -139326770 + T-rich Low_complexity Low_complexity 1 45 0 342 283 10 10 chr11 9457228 9457327 -139326145 - MIR3 SINE MIR -10 198 100 2460 50 3 0 chr11 9457377 9457675 -139325797 - AluSp SINE Alu -14 299 1 181 143 232 18 chr11 9459667 9459723 -139323749 - MIR3 SINE MIR -5 203 136 1417 238 88 7 chr11 9459736 9460143 -139323329 - L1ME1 LINE L1 -19 6147 5708 1529 213 47 14 chr11 9460143 9460410 -139323062 - L1MDa LINE L1 -3847 2693 2436 1959 145 0 0 chr11 9460410 9460713 -139322759 - AluSx SINE Alu -9 303 1 1529 213 47 14 chr11 9460713 9461035 -139322437 - L1MDa LINE L1 -4104 2436 2082 2080 121 0 0 chr11 9461052 9461350 -139322122 - AluSg SINE Alu -12 298 1 736 172 0 8 chr11 9461362 9461484 -139321988 - AluSq/x SINE Alu -184 129 9 193 292 97 0 chr11 9461496 9461568 -139321904 - MIR SINE MIR -103 105 27 216 0 0 0 chr11 9461577 9461601 -139321871 + (GA)n Simple_repeat Simple_repeat 1 24 0 1381 188 7 7 chr11 9461601 9461877 -139321595 - AluJb SINE Alu -34 278 3 1626 181 14 0 chr11 9461891 9462184 -139321288 - AluJb SINE Alu -11 301 5 2180 112 0 0 chr11 9462220 9462516 -139320956 - AluSx SINE Alu -16 296 1 204 207 35 52 chr11 9462899 9462957 -139320515 - L2 LINE L2 0 3272 3216 1761 130 67 0 chr11 9463587 9463857 -139319615 - AluSx SINE Alu -24 288 1 1043 140 0 0 chr11 9464174 9464324 -139319148 + AluSq/x SINE Alu 2 151 -162 404 170 53 23 chr11 9464425 9464522 -139318950 - AluSc SINE Alu -91 208 119 982 238 114 65 chr11 9464557 9464654 -139318818 - L1MC4a LINE L1 -1944 5864 5773 2028 105 23 10 chr11 9464654 9464959 -139318513 + AluSg SINE Alu 1 309 -1 982 238 114 65 chr11 9464959 9465150 -139318322 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9465150 9465184 -139318288 + (CA)n Simple_repeat Simple_repeat 2 35 0 982 238 114 65 chr11 9465184 9465340 -139318132 - L1MC4a LINE L1 -2215 5593 5397 1877 86 4 0 chr11 9466248 9466540 -139316932 + AluSg SINE Alu 37 329 0 559 192 0 0 chr11 9467290 9467389 -139316083 - U13 snRNA snRNA -2 102 4 227 261 11 57 chr11 9469116 9469204 -139314268 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9470847 9470904 -139312568 + GC_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr11 9470981 9471026 -139312446 + GC_rich Low_complexity Low_complexity 1 45 0 35 78 0 0 chr11 9471224 9471301 -139312171 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9471356 9471387 -139312085 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9471432 9471463 -139312009 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9471957 9471990 -139311482 + GC_rich Low_complexity Low_complexity 1 33 0 2138 98 3 22 chr11 9472713 9473029 -139310443 - AluSx SINE Alu -2 310 1 311 282 264 17 chr11 9473031 9473084 -139310388 - L1ME LINE L1 -386 5735 5696 1817 92 32 51 chr11 9473084 9473398 -139310074 - AluSx SINE Alu -4 308 1 311 282 264 17 chr11 9473398 9473518 -139309954 - L1ME LINE L1 -425 5696 5519 1576 179 41 0 chr11 9474063 9474354 -139309118 - AluSx SINE Alu -4 308 6 24 53 0 0 chr11 9474368 9474406 -139309066 + AT_rich Low_complexity Low_complexity 1 38 0 184 303 106 0 chr11 9474462 9474528 -139308944 - L3 LINE CR1 -1261 316 244 * 396 277 91 22 chr11 9474494 9474677 -139308795 - MIR SINE MIR -60 202 3 485 277 92 8 chr11 9476510 9476658 -139306814 - MIR3 SINE MIR -36 172 30 233 278 144 0 chr11 9477569 9477659 -139305813 + L1ME4a LINE L1 5353 5455 -2353 445 184 10 78 chr11 9477738 9477841 -139305631 - MER20 DNA MER1_type -5 214 119 322 276 71 63 chr11 9477844 9478010 -139305462 + L1ME4a LINE L1 5724 5895 -226 1610 153 44 0 chr11 9478010 9478323 -139305149 + AluJb SINE Alu 1 325 0 322 276 71 63 chr11 9478323 9478394 -139305078 + L1ME4a LINE L1 5895 5964 -157 36 23 0 0 chr11 9478586 9478629 -139304843 + AT_rich Low_complexity Low_complexity 1 43 0 1747 185 14 71 chr11 9478644 9478725 -139304747 + MLT1A1 LTR MaLR 1 85 -280 2030 94 0 30 chr11 9478725 9479022 -139304450 + AluSc SINE Alu 2 289 -20 1747 185 14 71 chr11 9479022 9479307 -139304165 + MLT1A1 LTR MaLR 85 346 -19 555 128 12 0 chr11 9479459 9479545 -139303927 + AluSg/x SINE Alu 212 298 -11 1770 172 7 0 chr11 9480279 9480570 -139302902 + AluJo SINE Alu 1 293 -19 31 0 0 0 chr11 9480624 9480655 -139302817 + AT_rich Low_complexity Low_complexity 1 31 0 233 304 108 39 chr11 9480873 9480975 -139302497 + LTR16B LTR ERVL 119 227 -237 1832 147 6 55 chr11 9481215 9481541 -139301931 - AluJb SINE Alu -2 310 1 1987 144 7 3 chr11 9481847 9482153 -139301319 + AluSx SINE Alu 1 307 -5 28 61 0 0 chr11 9482186 9482235 -139301237 + AT_rich Low_complexity Low_complexity 1 49 0 423 214 151 31 chr11 9482754 9482913 -139300559 - MIR3 SINE MIR -25 183 6 386 286 26 94 chr11 9483000 9483192 -139300280 + L2 LINE L2 3021 3199 -73 936 115 0 183 chr11 9483662 9483897 -139299575 - 7SK RNA RNA 0 193 2 872 211 100 21 chr11 9483983 9484125 -139299347 - MER33 DNA MER1_type -2273 312 183 2086 117 0 0 chr11 9484125 9484406 -139299066 + AluSq SINE Alu 19 299 -14 872 211 100 21 chr11 9484406 9484552 -139298920 - MER33 DNA MER1_type -2402 183 1 2187 106 0 3 chr11 9484854 9485176 -139298296 + AluY SINE Alu 1 321 0 189 0 0 0 chr11 9486259 9486280 -139297192 + (A)n Simple_repeat Simple_repeat 1 21 0 313 101 0 117 chr11 9486500 9486577 -139296895 + Alu SINE Alu 1 47 -255 947 195 5 70 chr11 9487740 9487955 -139295517 - AluJo SINE Alu -27 285 85 1495 205 10 27 chr11 9487956 9488253 -139295219 - AluJo SINE Alu -15 297 6 195 340 0 0 chr11 9488260 9488307 -139295165 + MIR SINE MIR 46 92 -170 2277 113 2 59 chr11 9488332 9488360 -139295112 - Tigger2a DNA MER2_type -2316 392 364 1387 155 143 19 chr11 9488360 9488618 -139294854 - AluSg SINE Alu -20 290 1 2277 113 2 59 chr11 9488618 9488998 -139294474 - Tigger2a DNA MER2_type -2344 364 7 309 296 144 8 chr11 9488999 9489124 -139294348 + MIR SINE MIR 103 244 -18 192 40 0 0 chr11 9489163 9489188 -139294284 + (CTG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr11 9489482 9489519 -139293953 + AT_rich Low_complexity Low_complexity 1 37 0 1597 187 3 47 chr11 9489519 9489819 -139293653 - AluJb SINE Alu -25 287 1 311 318 99 26 chr11 9490250 9490401 -139293071 + MIR3 SINE MIR 20 181 -27 198 0 0 0 chr11 9490819 9490841 -139292631 + (TA)n Simple_repeat Simple_repeat 2 23 0 403 225 181 0 chr11 9491002 9491162 -139292310 - L1MC4a LINE L1 -1860 5948 5760 24 32 0 0 chr11 9491336 9491367 -139292105 + AT_rich Low_complexity Low_complexity 1 31 0 287 246 43 14 chr11 9492227 9492296 -139291176 - MIR3 SINE MIR -51 157 87 195 324 14 28 chr11 9492481 9492552 -139290920 + L2 LINE L2 3239 3308 -5 6258 51 14 14 chr11 9493183 9493610 -139289862 + L1PA8A LINE L1 5254 5683 -448 2151 120 0 17 chr11 9493610 9493911 -139289561 + AluSq SINE Alu 3 298 -15 6258 51 14 14 chr11 9493911 9494332 -139289140 + L1PA8A LINE L1 5682 6102 -29 198 91 0 0 chr11 9494333 9494366 -139289106 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1161 142 25 15 chr11 9494409 9494613 -139288859 - AluJb SINE Alu -22 290 85 21 0 0 0 chr11 9494909 9494930 -139288542 + AT_rich Low_complexity Low_complexity 1 21 0 234 174 0 0 chr11 9495093 9495139 -139288333 + (CA)n Simple_repeat Simple_repeat 2 47 0 759 199 23 0 chr11 9495531 9495662 -139287810 + AluJo SINE Alu 1 134 -178 30 27 0 0 chr11 9495745 9495782 -139287690 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 9495822 9495843 -139287629 + AT_rich Low_complexity Low_complexity 1 21 0 2094 120 29 13 chr11 9495876 9496184 -139287288 - AluSq SINE Alu 0 313 1 1676 189 0 17 chr11 9496386 9496687 -139286785 - AluJo SINE Alu -16 296 1 2121 137 0 0 chr11 9496695 9497002 -139286470 - AluSx SINE Alu -5 307 1 1932 147 0 23 chr11 9497006 9497306 -139286166 - AluSx SINE Alu -19 293 1 1015 142 73 0 chr11 9497387 9497591 -139285881 - L1MA8 LINE L1 -3 6288 6070 1378 163 38 0 chr11 9497665 9497929 -139285543 + L1MB7 LINE L1 5895 6168 -16 1681 163 4 8 chr11 9498174 9498425 -139285047 + AluJo SINE Alu 1 250 -62 324 316 175 12 chr11 9499116 9499287 -139284185 - MIR SINE MIR -58 204 6 288 102 20 0 chr11 9499773 9499822 -139283650 - AluSp/q SINE Alu -7 296 247 2744 138 8 6 chr11 9499923 9500415 -139283057 + L1MB1 LINE L1 5298 5790 -378 698 139 8 23 chr11 9500415 9500537 -139282935 + L1PB2 LINE L1 6025 6151 0 1723 168 28 31 chr11 9500556 9500568 -139282904 + L1MB1 LINE L1 5769 5780 -388 2290 119 0 0 chr11 9500568 9500880 -139282592 + AluSx SINE Alu 1 312 0 1723 168 28 31 chr11 9500880 9501259 -139282213 + L1MB1 LINE L1 5780 6159 -9 22 56 0 0 chr11 9501973 9502009 -139281463 + AT_rich Low_complexity Low_complexity 1 36 0 186 385 68 17 chr11 9502818 9502935 -139280537 - L2 LINE L2 -14 3258 3136 1996 146 13 0 chr11 9502983 9503291 -139280181 + AluSx SINE Alu 1 312 0 438 234 0 0 chr11 9503560 9503667 -139279805 + L1MB7 LINE L1 6059 6165 -19 729 319 53 83 chr11 9503900 9504311 -139279161 - L2 LINE L2 0 3272 2874 1988 153 51 33 chr11 9504315 9504765 -139278707 + L1MB7 LINE L1 5727 6184 0 1790 160 16 44 chr11 9504955 9505274 -139278198 + AluJb SINE Alu 1 310 -2 192 40 0 0 chr11 9505988 9506013 -139277459 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1642 168 3 52 chr11 9506312 9506640 -139276832 - AluJo SINE Alu 0 312 1 313 117 39 0 chr11 9506651 9506728 -139276744 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr11 9506735 9506758 -139276714 + AT_rich Low_complexity Low_complexity 1 23 0 670 205 0 0 chr11 9506758 9506870 -139276602 - FLAM_C SINE Alu -25 118 7 198 91 0 0 chr11 9507048 9507081 -139276391 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 328 238 95 106 chr11 9507081 9507270 -139276202 + LTR67 LTR ERVL 32 218 -339 318 219 15 133 chr11 9507329 9507525 -139275947 + LTR67 LTR ERVL 363 535 -22 362 347 55 36 chr11 9507567 9507786 -139275686 + L2 LINE L2 2869 3091 -181 207 383 74 0 chr11 9507992 9508073 -139275399 + L2 LINE L2 3125 3211 -61 581 178 0 0 chr11 9508094 9508184 -139275288 + FLAM_C SINE Alu 29 118 -25 29 60 0 0 chr11 9508184 9508234 -139275238 + AT_rich Low_complexity Low_complexity 1 50 0 1744 88 161 4 chr11 9508390 9508651 -139274821 - AluSx SINE Alu 0 302 1 437 262 117 0 chr11 9509955 9510100 -139273372 + MIR SINE MIR 86 247 -15 430 299 7 0 chr11 9510113 9510257 -139273215 - L1ME LINE L1 -426 5695 5551 1064 137 37 0 chr11 9510462 9510623 -139272849 - AluSq SINE Alu -8 305 139 1825 153 13 32 chr11 9510625 9510933 -139272539 - AluJb SINE Alu -10 302 1 513 283 127 67 chr11 9510935 9511144 -139272328 - LTR67 LTR ERVL -60 497 302 2348 102 76 15 chr11 9511144 9511487 -139271985 - THE1B LTR MaLR 0 364 1 513 283 127 67 chr11 9511487 9511743 -139271729 - LTR67 LTR ERVL -255 302 4 928 245 69 4 chr11 9512056 9512289 -139271183 + MIR SINE MIR 1 248 -14 599 334 63 12 chr11 9512456 9512788 -139270684 - L2 LINE L2 -1108 2206 1858 1778 135 0 80 chr11 9513006 9513332 -139270140 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 9514260 9514282 -139269190 + AT_rich Low_complexity Low_complexity 1 22 0 1832 147 45 0 chr11 9514479 9514765 -139268707 + AluJb SINE Alu 1 299 -13 1402 154 123 11 chr11 9514777 9515037 -139268435 + AluSg SINE Alu 1 289 -21 1055 114 81 0 chr11 9515053 9515202 -139268270 + AluSg/x SINE Alu 134 294 -18 21 0 0 0 chr11 9515585 9515606 -139267866 + AT_rich Low_complexity Low_complexity 1 21 0 258 302 12 36 chr11 9516434 9516467 -139267005 + T-rich Low_complexity Low_complexity 4 36 -206 2222 119 0 0 chr11 9516467 9516769 -139266703 - AluSx SINE Alu -9 303 2 258 302 12 36 chr11 9516769 9516897 -139266575 + T-rich Low_complexity Low_complexity 36 242 0 1734 194 16 10 chr11 9517112 9517422 -139266050 - AluJo SINE Alu 0 312 1 460 266 94 0 chr11 9517765 9517893 -139265579 - MIR SINE MIR -6 256 117 403 266 165 19 chr11 9518107 9518265 -139265207 - MER5A DNA MER1_type 0 189 9 735 211 108 5 chr11 9518420 9518614 -139264858 + MER58C DNA MER1_type 2 215 0 279 274 142 25 chr11 9518654 9518858 -139264614 - L2 LINE L2 -464 2850 2623 270 190 138 0 chr11 9519060 9519118 -139264354 + MER112 DNA MER1_type 178 243 -17 186 303 40 50 chr11 9519218 9519317 -139264155 - L2 LINE L2 -887 2427 2330 2057 129 10 10 chr11 9519418 9519728 -139263744 - AluSx SINE Alu -2 310 1 1821 121 86 0 chr11 9520652 9520932 -139262540 - AluSx SINE Alu -8 304 1 22 0 0 0 chr11 9521034 9521056 -139262416 + AT_rich Low_complexity Low_complexity 1 22 0 720 151 8 0 chr11 9521056 9521175 -139262297 + AluSq/x SINE Alu 1 120 -193 360 0 0 0 chr11 9521186 9521226 -139262246 + (TA)n Simple_repeat Simple_repeat 2 41 0 2204 120 0 3 chr11 9521226 9521526 -139261946 - AluSc SINE Alu -10 299 1 289 228 65 16 chr11 9521689 9521812 -139261660 + L1ME4a LINE L1 5989 6117 -4 7698 61 10 6 chr11 9522043 9523403 -139260069 - L1P2 LINE L1 -529 5625 4264 625 183 7 10 chr11 9523513 9523648 -139259824 - LTR27 LTR ERV1 -213 423 299 926 147 11 17 chr11 9523715 9523892 -139259580 - LTR28 LTR ERV1 -844 176 1 202 354 0 0 chr11 9523916 9523981 -139259491 - L2 LINE L2 -940 2374 2310 581 306 83 20 chr11 9523996 9524073 -139259399 + L2 LINE L2 2084 2155 -1159 2218 158 85 5 chr11 9524073 9524460 -139259012 + MER47B DNA MER2_type 1 418 0 581 306 83 20 chr11 9524460 9524634 -139258838 + L2 LINE L2 2155 2351 -963 1620 119 0 4 chr11 9524964 9525191 -139258281 - AluSc SINE Alu -83 226 1 346 204 64 14 chr11 9525339 9525493 -139257979 + L1ME4a LINE L1 1196 6118 0 2142 97 14 10 chr11 9526444 9526732 -139256740 + AluSg SINE Alu 1 289 -21 892 123 0 0 chr11 9526732 9526849 -139256623 - AluJo/FLAM SINE Alu -183 129 13 679 206 85 11 chr11 9526927 9527116 -139256356 - L1MC5 LINE L1 -68 7893 7691 21 82 0 0 chr11 9528613 9528662 -139254810 + AT_rich Low_complexity Low_complexity 1 49 0 2091 107 24 7 chr11 9528848 9529139 -139254333 - AluSg SINE Alu -14 296 1 1188 142 9 0 chr11 9529359 9529570 -139253902 - L1PA16 LINE L1 -153 6013 5801 300 207 187 20 chr11 9529731 9529881 -139253591 + MIR SINE MIR 14 188 -74 318 277 0 0 chr11 9529926 9530009 -139253463 + L1MC/D LINE L1 5725 5807 -2001 25 0 0 0 chr11 9530417 9530442 -139253030 + AT_rich Low_complexity Low_complexity 1 25 0 366 210 59 183 chr11 9530680 9530899 -139252573 - MIR3 SINE MIR -13 195 4 28 0 0 0 chr11 9532262 9532290 -139251182 + AT_rich Low_complexity Low_complexity 1 28 0 1231 119 0 97 chr11 9532392 9532619 -139250853 - MER46A DNA MER2_type 0 236 32 773 162 14 0 chr11 9532637 9532785 -139250687 - L1MD3 LINE L1 -1999 5996 5847 1533 161 61 7 chr11 9533081 9533360 -139250112 - AluJo SINE Alu -18 294 1 23 101 0 0 chr11 9533460 9533539 -139249933 + AT_rich Low_complexity Low_complexity 1 79 0 1091 253 30 33 chr11 9533626 9533993 -139249479 - L1MC4a LINE L1 -1833 5975 5610 4065 183 51 20 chr11 9534152 9535368 -139248104 - L1M4c LINE L1 -4831 2024 872 654 119 50 10 chr11 9535374 9535475 -139247997 + FLAM_C SINE Alu 9 113 -30 287 193 0 0 chr11 9535505 9535562 -139247910 - L1M4c LINE L1 -5978 881 825 * 1746 216 48 20 chr11 9535561 9535960 -139247512 - L1M4c LINE L1 -6439 420 11 2159 90 0 0 chr11 9536051 9536353 -139247119 + AluSc SINE Alu 1 302 0 298 297 143 0 chr11 9536904 9536995 -139246477 - L2 LINE L2 -1 3271 3168 1739 135 50 30 chr11 9537020 9537317 -139246155 + AluJo SINE Alu 1 303 -9 551 211 92 0 chr11 9537346 9537455 -139246017 - MER94 DNA DNA 0 134 16 25 75 0 0 chr11 9539727 9539780 -139243692 + AT_rich Low_complexity Low_complexity 1 53 0 188 198 62 123 chr11 9540206 9540287 -139243185 - MER5A DNA MER1_type 0 189 114 934 185 121 24 chr11 9540291 9540540 -139242932 + AluSg SINE Alu 35 307 -3 28 48 0 0 chr11 9540690 9540732 -139242740 + AT_rich Low_complexity Low_complexity 1 42 0 1970 110 10 14 chr11 9540780 9541071 -139242401 - AluSc SINE Alu -19 290 1 7580 25 0 0 chr11 9541338 9542211 -139241261 - L1PA3 LINE L1 -3 6152 5280 328 264 365 6 chr11 9542497 9542664 -139240808 + MIR SINE MIR 16 242 -20 585 254 258 10 chr11 9542687 9542982 -139240490 + L3 LINE CR1 685 1052 -525 407 279 39 16 chr11 9542991 9543120 -139240352 - MIR SINE MIR -21 241 110 501 293 86 82 chr11 9543141 9543690 -139239782 - LTR67 LTR ERVL -4 553 3 289 279 89 0 chr11 9543738 9543817 -139239655 + L2 LINE L2 3228 3313 0 948 269 142 24 chr11 9543819 9544242 -139239230 + L3 LINE CR1 1042 1514 -63 317 251 280 23 chr11 9544493 9544668 -139238804 + MIR SINE MIR 30 249 -13 631 279 71 5 chr11 9544783 9544980 -139238492 + MIR SINE MIR 53 262 0 191 303 61 15 chr11 9545052 9545118 -139238354 + MIR3 SINE MIR 109 177 -31 815 207 52 123 chr11 9545569 9545878 -139237594 - LTR41 LTR ERVL -17 756 470 659 186 124 12 chr11 9545965 9546126 -139237346 - LTR41 LTR ERVL -594 179 1 754 204 137 31 chr11 9546159 9546385 -139237087 + MIR SINE MIR 11 260 -2 2312 73 0 19 chr11 9546572 9546889 -139236583 - AluY SINE Alu 0 311 1 2119 84 0 11 chr11 9547435 9547749 -139235723 + AluSx SINE Alu 1 311 0 21 36 0 0 chr11 9550262 9550290 -139233182 + AT_rich Low_complexity Low_complexity 1 28 0 2053 47 0 4 chr11 9550830 9551086 -139232386 + AluY SINE Alu 47 301 -10 1352 133 38 0 chr11 9551103 9551314 -139232158 + MER20 DNA MER1_type 1 219 0 1391 227 174 10 chr11 9551983 9552467 -139231005 + L1ME3 LINE L1 5580 6142 -20 1823 118 35 0 chr11 9552507 9552795 -139230677 - AluSx SINE Alu -14 298 1 207 286 91 13 chr11 9553898 9553975 -139229497 + MIR SINE MIR 20 102 -160 282 93 0 0 chr11 9555221 9555264 -139228208 + MADE1 DNA Mariner 38 80 0 351 241 120 8 chr11 9555854 9555987 -139227485 - MIR SINE MIR -68 194 47 250 132 0 57 chr11 9557452 9557505 -139225967 + L2 LINE L2 3223 3272 0 427 358 53 24 chr11 9558105 9558351 -139225121 + L2 LINE L2 2578 2830 -484 296 266 22 43 chr11 9558374 9558500 -139224972 + (TGGA)n Simple_repeat Simple_repeat 1 123 -57 2261 97 10 0 chr11 9558500 9558808 -139224664 + AluSq SINE Alu 1 311 -2 296 266 22 43 chr11 9558808 9558865 -139224607 + (TGGA)n Simple_repeat Simple_repeat 123 180 0 1931 240 48 26 chr11 9559156 9559966 -139223506 - L2 LINE L2 0 3313 2482 264 219 25 50 chr11 9560394 9560513 -139222959 + (TA)n Simple_repeat Simple_repeat 1 116 0 915 221 13 24 chr11 9560815 9561038 -139222434 + MLT1A1 LTR MaLR 173 365 0 909 239 6 0 chr11 9561165 9561332 -139222140 - MER5A DNA MER1_type -21 168 1 1382 323 113 23 chr11 9561804 9562798 -139220674 + L2 LINE L2 1606 2688 -626 205 219 62 16 chr11 9563353 9563417 -139220055 - MIR3 SINE MIR -33 175 109 412 264 33 30 chr11 9563862 9564008 -139219464 + MIR SINE MIR 1 149 -59 236 258 18 126 chr11 9564488 9564655 -139218817 + L2 LINE L2 2966 3114 -158 2942 67 14 3 chr11 9565093 9565464 -139218008 + THE1C LTR MaLR 1 375 0 2110 147 68 66 chr11 9565817 9566315 -139217157 - MLT1D LTR MaLR -2 503 5 239 259 36 9 chr11 9566450 9566562 -139216910 + LTR16B LTR ERVL 291 405 -59 940 284 46 18 chr11 9566569 9566851 -139216621 + ERVL LTR ERVL 1739 2028 -2968 840 314 20 4 chr11 9566891 9567146 -139216326 + ERVL LTR ERVL 4254 4512 -1252 303 311 42 36 chr11 9567171 9567364 -139216108 + ERVL LTR ERVL 4935 5128 -636 351 308 23 0 chr11 9567476 9567609 -139215863 + ERVL LTR ERVL 5191 5326 -328 2203 218 78 53 chr11 9567754 9567804 -139215668 - MER65A-int LTR ERV1 -3972 899 852 1781 159 7 0 chr11 9567804 9568099 -139215373 - AluSx SINE Alu -8 304 8 2203 218 78 53 chr11 9568099 9568150 -139215322 - MER65A-int LTR ERV1 -4019 852 804 1893 139 0 0 chr11 9568150 9568476 -139214996 - AluJb SINE Alu 0 326 1 2203 218 78 53 chr11 9568476 9568870 -139214602 - MER65A-int LTR ERV1 -4067 804 376 3793 41 5 2 chr11 9568870 9569311 -139214161 - MLT2A1 LTR ERVL -2 442 1 2203 218 78 53 chr11 9569311 9569513 -139213959 - MER65A-int LTR ERV1 -4495 376 181 2883 152 46 67 chr11 9569513 9570126 -139213346 + LTR9 LTR ERV1 1 600 -12 288 287 16 25 chr11 9570153 9570275 -139213197 - MER65A-int LTR ERV1 -4703 168 48 2712 111 27 36 chr11 9570319 9570377 -139213095 - MER65A LTR ERV1 0 445 388 2353 122 71 29 chr11 9570377 9570417 -139213055 - MSTA LTR MaLR 0 428 391 2840 6 0 0 chr11 9570417 9570733 -139212739 + AluYb8 SINE Alu 1 316 -2 2353 122 71 29 chr11 9570733 9570745 -139212727 - MSTA LTR MaLR -37 391 381 1777 160 24 0 chr11 9570745 9571038 -139212434 + AluJo SINE Alu 2 301 -11 2353 122 71 29 chr11 9571038 9571395 -139212077 - MSTA LTR MaLR -47 381 1 2712 111 27 36 chr11 9571395 9571744 -139211728 - MER65A LTR ERV1 -57 388 40 252 59 0 0 chr11 9571744 9571778 -139211694 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2712 111 27 36 chr11 9571778 9571818 -139211654 - MER65A LTR ERV1 -405 40 1 1309 267 55 0 chr11 9571825 9572155 -139211317 + LTR16B LTR ERVL 9 356 -108 450 161 354 15 chr11 9572250 9572380 -139211092 + MER5A DNA MER1_type 16 189 0 331 301 116 7 chr11 9572473 9572619 -139210853 - MIR3 SINE MIR -43 165 4 361 291 0 0 chr11 9572684 9572770 -139210702 + MER21B LTR ERV1 1 86 -777 1267 215 109 15 chr11 9572842 9573400 -139210072 + MER21B LTR ERV1 98 754 -109 561 172 203 44 chr11 9573453 9573680 -139209792 + MER33 DNA MER1_type 62 324 0 4606 147 62 25 chr11 9574125 9575003 -139208469 - MER4D LTR ERV1 0 872 1 2084 55 0 36 chr11 9575459 9575734 -139207738 + AluY SINE Alu 38 302 -9 21 0 0 0 chr11 9576574 9576595 -139206877 + AT_rich Low_complexity Low_complexity 1 21 0 1837 133 30 10 chr11 9579278 9579578 -139203894 + AluJb SINE Alu 1 306 -6 494 274 116 3 chr11 9579580 9579933 -139203539 + L1ME4a LINE L1 5203 5597 -743 2273 94 3 0 chr11 9579966 9580274 -139203198 + AluSx SINE Alu 1 309 -3 227 343 0 0 chr11 9581212 9581279 -139202193 + L2 LINE L2 3206 3272 0 268 204 148 37 chr11 9582040 9582148 -139201324 + L1ME4a LINE L1 6000 6119 -2 294 273 230 21 chr11 9582394 9582581 -139200891 + MIR SINE MIR 32 257 -5 2361 66 0 14 chr11 9582650 9582937 -139200535 - AluSc SINE Alu -23 286 4 2247 82 0 50 chr11 9584337 9584656 -139198816 - AluY SINE Alu -8 303 1 1903 264 107 35 chr11 9585154 9585801 -139197671 - MER115 DNA AcHobo 0 693 1 703 209 68 12 chr11 9587288 9587451 -139196021 + MER5B DNA MER1_type 1 172 -6 2108 104 7 0 chr11 9587906 9588194 -139195278 + AluSx SINE Alu 6 295 -17 192 143 89 54 chr11 9588437 9588493 -139194979 + MIR3 SINE MIR 143 200 -8 1725 137 0 83 chr11 9588517 9588830 -139194642 - AluJb SINE Alu -25 287 1 394 259 118 22 chr11 9588911 9589046 -139194426 - MIR SINE MIR -30 232 85 941 170 0 82 chr11 9589088 9589135 -139194337 - MER5B DNA MER1_type 0 178 129 2118 140 0 3 chr11 9589135 9589443 -139194029 - AluSx SINE Alu -5 307 1 941 170 0 82 chr11 9589443 9589589 -139193883 - MER5B DNA MER1_type -49 129 1 1043 179 10 0 chr11 9589739 9589957 -139193515 + AluJb SINE Alu 87 306 0 1956 124 32 38 chr11 9590145 9590459 -139193013 + AluSx SINE Alu 1 312 0 597 249 24 83 chr11 9590984 9591237 -139192235 - MIR SINE MIR -8 254 17 503 281 59 59 chr11 9591863 9592119 -139191353 - MIR SINE MIR -6 256 1 1902 112 11 21 chr11 9593444 9593729 -139189743 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr11 9593729 9593760 -139189712 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2493 69 0 19 chr11 9594415 9594732 -139188740 + AluY SINE Alu 1 311 0 809 185 94 22 chr11 9595590 9595706 -139187766 - L1MC/D LINE L1 -743 5403 5297 1865 179 3 0 chr11 9595706 9596002 -139187470 + AluSx SINE Alu 1 297 -15 809 185 94 22 chr11 9596002 9596141 -139187331 - L1MC/D LINE L1 -849 5297 5167 27 0 0 0 chr11 9596141 9596168 -139187304 + AT_rich Low_complexity Low_complexity 1 27 0 2429 59 0 3 chr11 9596168 9596457 -139187015 - AluY SINE Alu -23 288 1 831 158 24 0 chr11 9596467 9596594 -139186878 - FLAM_C SINE Alu -1 132 3 644 209 44 0 chr11 9596601 9596759 -139186713 - L1MC/D LINE L1 -2811 3335 3171 30 27 0 0 chr11 9598755 9598792 -139184680 + AT_rich Low_complexity Low_complexity 1 37 0 625 281 98 72 chr11 9599496 9599884 -139183588 + HAL1 LINE L1 73 482 -2025 183 42 0 0 chr11 9599884 9599908 -139183564 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 625 281 98 72 chr11 9599908 9600102 -139183370 + HAL1 LINE L1 482 670 -1837 1777 233 24 9 chr11 9600191 9600616 -139182856 - L1ME1 LINE L1 -5 6161 5731 1108 201 97 37 chr11 9600617 9600712 -139182760 - L1MD2 LINE L1 -315 6044 5956 1967 164 0 3 chr11 9600712 9601010 -139182462 + AluSx SINE Alu 1 297 -15 1108 201 97 37 chr11 9601010 9601213 -139182259 - L1MD2 LINE L1 -403 5956 5728 2108 101 3 7 chr11 9601373 9601670 -139181802 - AluSc SINE Alu -13 296 1 232 337 50 40 chr11 9601798 9601899 -139181573 - L2 LINE L2 -48 3224 3123 349 191 24 36 chr11 9601993 9602077 -139181395 + MIR SINE MIR 180 262 0 858 193 99 9 chr11 9602443 9602666 -139180806 + L1MB8 LINE L1 5931 6173 -5 1263 124 0 0 chr11 9603090 9603281 -139180191 - L1PA16 LINE L1 -194 5957 5767 22 35 0 0 chr11 9604607 9604636 -139178836 + AT_rich Low_complexity Low_complexity 1 29 0 776 206 0 0 chr11 9604935 9605066 -139178406 + AluSq/x SINE Alu 3 133 -180 2171 115 3 3 chr11 9605294 9605589 -139177883 - AluSx SINE Alu -12 300 6 528 194 0 40 chr11 9605611 9605735 -139177737 + L1MB7 LINE L1 6051 6169 -15 2106 133 3 3 chr11 9605743 9606044 -139177428 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr11 9606202 9606224 -139177248 + AT_rich Low_complexity Low_complexity 1 22 0 5033 95 37 1 chr11 9606431 9607107 -139176365 + L1PA15 LINE L1 5463 6162 -3 719 141 0 0 chr11 9607584 9607683 -139175789 + AluJ/FLAM SINE Alu 2 100 -212 262 225 142 33 chr11 9608958 9609078 -139174394 - L1ME4a LINE L1 -1 6120 5988 2151 102 10 7 chr11 9609080 9609373 -139174099 - AluSc SINE Alu -15 294 1 2089 134 0 7 chr11 9609407 9609713 -139173759 + AluSx SINE Alu 1 304 -8 630 158 17 25 chr11 9610040 9610160 -139173312 + L1MB2 LINE L1 6038 6156 -15 255 196 0 20 chr11 9610168 9610219 -139173253 + L1ME LINE L1 5615 5664 -457 1677 127 13 71 chr11 9610908 9611216 -139172256 + AluSc SINE Alu 3 292 -17 211 300 0 17 chr11 9611236 9611296 -139172176 + GA-rich Low_complexity Low_complexity 3 61 0 228 246 0 0 chr11 9612377 9612438 -139171034 + (TA)n Simple_repeat Simple_repeat 1 61 0 1286 179 71 40 chr11 9613374 9613671 -139169801 + AluJb SINE Alu 5 310 -2 2407 87 3 0 chr11 9613693 9613992 -139169480 - AluSp SINE Alu -13 300 1 2405 76 0 0 chr11 9614479 9614769 -139168703 - AluSp SINE Alu -23 290 1 21 0 0 0 chr11 9615380 9615401 -139168071 + AT_rich Low_complexity Low_complexity 1 21 0 394 335 158 28 chr11 9616326 9616522 -139166950 + L2 LINE L2 2942 3188 -84 2430 96 207 5 chr11 9616522 9616909 -139166563 + MER4C LTR ERV1 1 465 0 394 335 158 28 chr11 9616909 9616996 -139166476 + L2 LINE L2 3188 3262 -10 492 211 48 80 chr11 9617366 9617658 -139165814 - MER112 DNA MER1_type -8 252 1 518 276 99 5 chr11 9617795 9617987 -139165485 - MIR SINE MIR 0 262 53 2673 33 0 0 chr11 9618006 9618307 -139165165 - AluY SINE Alu -10 301 1 204 309 29 15 chr11 9618533 9618601 -139164871 + L2 LINE L2 3187 3255 -17 323 221 15 0 chr11 9618633 9618701 -139164771 + MIR SINE MIR 54 122 -86 221 269 0 30 chr11 9619212 9619279 -139164193 + GA-rich Low_complexity Low_complexity 2 66 0 2392 89 0 19 chr11 9620025 9620340 -139163132 + AluSc SINE Alu 1 309 0 2845 110 106 9 chr11 9620805 9621231 -139162241 + MLT1C LTR MaLR 1 467 0 820 311 196 36 chr11 9621589 9622452 -139161020 + L3 LINE CR1 480 1480 -97 332 164 15 0 chr11 9622453 9622520 -139160952 + (TG)n Simple_repeat Simple_repeat 2 69 0 1941 83 0 149 chr11 9622538 9622888 -139160584 - AluSq SINE Alu -15 298 1 1791 148 16 26 chr11 9622998 9623302 -139160170 + AluJo SINE Alu 1 301 -11 899 125 0 0 chr11 9624758 9624886 -139158586 + FLAM_C SINE Alu 16 143 0 294 29 0 0 chr11 9625303 9625338 -139158134 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 411 143 12 168 chr11 9626041 9626202 -139157270 - MER104 DNA Tc2 -3 177 42 2468 90 0 0 chr11 9626208 9626520 -139156952 + AluSx SINE Alu 1 312 0 1887 153 7 7 chr11 9626749 9627049 -139156423 - AluJb SINE Alu -12 300 1 261 264 11 22 chr11 9628183 9628274 -139155198 + GA-rich Low_complexity Low_complexity 5 94 0 891 161 0 0 chr11 9628361 9628491 -139154981 - FLAM_C SINE Alu -3 130 1 2502 64 0 16 chr11 9629159 9629470 -139154002 - AluY SINE Alu -5 306 1 595 104 26 149 chr11 9629482 9629525 -139153947 - L1MB4 LINE L1 -6 6174 6127 2340 75 17 0 chr11 9629525 9629819 -139153653 - AluSp SINE Alu -14 299 1 595 104 26 149 chr11 9629819 9629830 -139153642 - L1MB4 LINE L1 -53 6127 6116 2203 94 3 0 chr11 9629830 9630116 -139153356 - AluSp SINE Alu 0 313 27 595 104 26 149 chr11 9630116 9630214 -139153258 - L1MB4 LINE L1 -64 6116 6040 1613 224 52 72 chr11 9630986 9631088 -139152384 - L1ME3A LINE L1 -99 6140 6037 1726 145 10 52 chr11 9631088 9631398 -139152074 + AluJo SINE Alu 2 298 -14 1613 224 52 72 chr11 9631398 9631834 -139151638 - L1ME3A LINE L1 -202 6037 5613 * 1934 246 108 62 chr11 9631833 9632940 -139150532 - L1ME3A LINE L1 -945 5270 4113 360 286 0 0 chr11 9633201 9633299 -139150173 - L1ME3A LINE L1 -2262 3953 3856 589 258 52 34 chr11 9633353 9633497 -139149975 - L1ME3A LINE L1 -3921 2475 2335 2264 93 0 0 chr11 9633497 9633786 -139149686 - AluSc SINE Alu -20 289 1 589 258 52 34 chr11 9633786 9633990 -139149482 - L1ME3A LINE L1 -4061 2335 2121 578 220 64 7 chr11 9634762 9634903 -139148569 + MER58B DNA MER1_type 191 339 -2 2185 88 6 50 chr11 9635513 9635830 -139147642 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 9636663 9636684 -139146788 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 3 10 chr11 9637090 9637391 -139146081 - AluSx SINE Alu -13 299 1 22 0 0 0 chr11 9639350 9639372 -139144100 + AT_rich Low_complexity Low_complexity 1 22 0 416 102 17 0 chr11 9639374 9639433 -139144039 - U7 snRNA snRNA -2 61 2 949 209 51 105 chr11 9640117 9640307 -139143165 + L1MC4 LINE L1 7620 7819 -223 1282 69 0 17 chr11 9640307 9640482 -139142990 + L1PA8 LINE L1 6001 6172 0 949 209 51 105 chr11 9640482 9640721 -139142751 + L1MC4 LINE L1 7819 8026 -16 28 0 0 0 chr11 9641430 9641458 -139142014 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 9643271 9643292 -139140180 + AT_rich Low_complexity Low_complexity 1 21 0 460 236 73 73 chr11 9644617 9644795 -139138677 - MER5B DNA MER1_type 0 178 1 297 254 70 0 chr11 9644811 9644882 -139138590 - MIR3 SINE MIR -52 156 81 282 56 0 0 chr11 9645790 9645826 -139137646 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1843 158 0 7 chr11 9645826 9646104 -139137368 - AluJo SINE Alu -26 286 11 362 327 12 48 chr11 9646326 9646410 -139137062 + L1MC4a LINE L1 5777 5854 -1954 2349 102 0 6 chr11 9646410 9646724 -139136748 + AluSx SINE Alu 1 312 0 362 327 12 48 chr11 9646724 9646807 -139136665 + L1MC4a LINE L1 5854 5938 -1870 1798 150 3 18 chr11 9647321 9647633 -139135839 - AluJb SINE Alu 0 308 1 387 272 35 26 chr11 9647719 9647833 -139135639 - MER5A DNA MER1_type -30 159 45 300 324 42 35 chr11 9647720 9647862 -139135610 + MER5A DNA MER1_type 43 185 -4 * 2543 153 84 19 chr11 9648396 9648964 -139134508 + L1MB4 LINE L1 5575 6179 -1 1648 149 38 60 chr11 9650133 9650449 -139133023 - AluJo SINE Alu -3 309 1 834 248 220 28 chr11 9651134 9651633 -139131839 - L2 LINE L2 -2 3311 2716 2629 43 0 0 chr11 9652343 9652643 -139130829 - AluY SINE Alu -11 300 1 351 294 203 0 chr11 9653074 9653227 -139130245 - MIR SINE MIR -8 254 71 27 49 0 0 chr11 9653286 9653327 -139130145 + AT_rich Low_complexity Low_complexity 1 41 0 1270 109 5 65 chr11 9655818 9656019 -139127453 - AluJb SINE Alu -11 301 113 231 108 0 0 chr11 9656022 9656059 -139127413 + Alu SINE Alu 198 234 -65 875 145 0 0 chr11 9656063 9656187 -139127285 - AluJb SINE Alu -188 124 1 1134 180 88 0 chr11 9656574 9656760 -139126712 - MER46A DNA MER2_type -2495 236 27 1517 173 40 40 chr11 9656760 9656938 -139126534 - AluJo SINE Alu -12 300 120 2365 109 0 0 chr11 9656938 9657240 -139126232 + AluSx SINE Alu 1 302 -10 1517 173 40 40 chr11 9657240 9657361 -139126111 - AluJo SINE Alu -191 121 1 1134 180 88 0 chr11 9657361 9657391 -139126081 - MER46A DNA MER2_type -2704 27 1 39 38 0 0 chr11 9658278 9658331 -139125141 + AT_rich Low_complexity Low_complexity 1 53 0 1876 163 0 0 chr11 9659951 9660240 -139123232 - AluJb SINE Alu -21 291 3 1264 165 5 27 chr11 9660463 9660687 -139122785 - AluJb SINE Alu -9 303 85 21 36 0 0 chr11 9660804 9660832 -139122640 + AT_rich Low_complexity Low_complexity 1 28 0 199 285 123 62 chr11 9660832 9660962 -139122510 - MIR SINE MIR -1 261 124 1648 186 33 3 chr11 9660965 9661266 -139122206 + AluSx SINE Alu 3 312 0 478 171 51 68 chr11 9661291 9661408 -139122064 - MIR SINE MIR -135 127 13 296 259 73 0 chr11 9661414 9661542 -139121930 - L1ME LINE L1 -345 5817 5682 3925 148 24 6 chr11 9661774 9662579 -139120893 + L1MA4 LINE L1 4634 5443 -743 1819 55 47 8 chr11 9662579 9662832 -139120640 + L1MA2 LINE L1 6037 6301 -3 4802 123 56 2 chr11 9662878 9663701 -139119771 + L1MA4 LINE L1 5428 6294 -6 247 67 67 0 chr11 9663701 9663746 -139119726 - L1MC5 LINE L1 -311 7650 7603 2043 55 3 86 chr11 9663770 9664060 -139119412 + AluY SINE Alu 5 270 -41 189 74 0 0 chr11 9664065 9664092 -139119380 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1578 210 72 71 chr11 9664157 9664808 -139118664 - L1MC5 LINE L1 -392 7569 6918 1662 113 0 0 chr11 9664871 9665093 -139118379 - AluSg/x SINE Alu -11 301 80 6864 139 11 9 chr11 9665093 9666247 -139117225 + L1P LINE L1 3828 4986 -1160 2302 91 0 3 chr11 9666247 9666544 -139116928 + AluSc SINE Alu 1 296 -13 6864 139 11 9 chr11 9666544 9666608 -139116864 + L1P LINE L1 4986 5048 -1098 880 97 28 28 chr11 9666739 9666883 -139116589 + AluY SINE Alu 168 311 0 7928 84 22 2 chr11 9666883 9668102 -139115370 + L1PA11 LINE L1 3294 4536 -1610 4587 111 44 0 chr11 9668402 9669090 -139114382 + L1PA11 LINE L1 5455 6172 -2 951 194 87 0 chr11 9669098 9669340 -139114132 + L1ME LINE L1 5310 5572 -594 546 181 0 0 chr11 9669351 9669434 -139114038 + AluS SINE Alu 1 83 -230 1906 92 0 0 chr11 9669600 9669849 -139113623 + AluY SINE Alu 59 307 -4 2283 76 0 33 chr11 9670384 9670688 -139112784 + AluSq SINE Alu 1 294 -19 180 419 73 0 chr11 9672555 9672679 -139110793 - MIR3 SINE MIR -24 184 52 229 388 54 0 chr11 9672810 9672939 -139110533 + L2 LINE L2 2917 3052 -220 880 187 113 127 chr11 9672963 9673342 -139110130 + MLT1A2 LTR MaLR 1 374 0 2140 124 3 0 chr11 9673358 9673656 -139109816 - AluSx SINE Alu -13 299 1 7108 53 11 0 chr11 9674018 9675137 -139108335 - L1PA6 LINE L1 -7 6147 5028 271 284 30 0 chr11 9676159 9676226 -139107246 + L2 LINE L2 3150 3218 -54 349 317 156 27 chr11 9676275 9676419 -139107053 - MIR SINE MIR -6 256 132 2195 139 3 0 chr11 9676419 9676729 -139106743 + AluSx SINE Alu 1 311 -1 349 317 156 27 chr11 9676729 9676808 -139106664 - MIR SINE MIR -130 132 4 406 279 79 19 chr11 9676875 9677090 -139106382 + Charlie8 DNA MER1_type 27 254 -2163 360 288 153 0 chr11 9677429 9677540 -139105932 + L3 LINE CR1 568 695 -882 1308 164 0 23 chr11 9678403 9678622 -139104850 + AluJo SINE Alu 87 300 -12 2174 92 41 3 chr11 9679143 9679437 -139104035 + AluSg SINE Alu 1 305 -5 1238 198 8 21 chr11 9679642 9679934 -139103538 - L1M1 LINE L1 -398 5785 5494 2444 62 10 0 chr11 9680006 9680298 -139103174 - AluSx SINE Alu -17 295 1 387 150 168 9 chr11 9680312 9680425 -139103047 - HsTC2 DNA Tc2 -49 1849 1 460 246 231 10 chr11 9681055 9681258 -139102214 + L2 LINE L2 3064 3311 -2 323 119 51 0 chr11 9681735 9681794 -139101678 - LTR50 LTR ERVL 0 795 734 2140 137 0 6 chr11 9681794 9682109 -139101363 - AluSq SINE Alu 0 313 1 1879 156 0 20 chr11 9682111 9682273 -139101199 - AluJb SINE Alu -17 295 140 2260 108 0 3 chr11 9682273 9682570 -139100902 - AluSc SINE Alu -12 297 2 1879 156 0 20 chr11 9682570 9682708 -139100764 - AluJb SINE Alu -172 140 1 857 163 0 7 chr11 9682709 9682844 -139100628 - AluJb SINE Alu -178 134 1 616 156 50 124 chr11 9682846 9683064 -139100408 - LTR41 LTR ERVL -54 719 518 610 265 6 11 chr11 9683289 9683470 -139100002 - LTR41 LTR ERVL -586 187 8 22 56 0 0 chr11 9683710 9683746 -139099726 + AT_rich Low_complexity Low_complexity 1 36 0 190 250 96 67 chr11 9683752 9683856 -139099616 - L2 LINE L2 -12 3301 3195 2231 100 3 0 chr11 9683951 9684242 -139099230 + AluSp SINE Alu 3 294 -19 21 0 0 0 chr11 9684242 9684263 -139099209 + AT_rich Low_complexity Low_complexity 1 21 0 1816 115 0 0 chr11 9684443 9684687 -139098785 + AluSx SINE Alu 55 298 -14 2345 90 0 7 chr11 9685657 9685956 -139097516 - AluSq SINE Alu -16 297 1 1251 170 54 81 chr11 9686443 9686570 -139096902 - L1MB7 LINE L1 -17 6167 6038 255 61 0 0 chr11 9686570 9686603 -139096869 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2153 141 0 3 chr11 9686603 9686916 -139096556 + AluSx SINE Alu 1 312 0 1251 170 54 81 chr11 9686916 9687122 -139096350 - L1MB7 LINE L1 -144 6040 5842 222 317 142 17 chr11 9687919 9688039 -139095433 - MIR SINE MIR -113 149 15 1635 186 7 29 chr11 9688285 9688592 -139094880 - AluJb SINE Alu -12 300 1 45 45 0 0 chr11 9689546 9689612 -139093860 + AT_rich Low_complexity Low_complexity 1 66 0 260 87 239 0 chr11 9690161 9690207 -139093265 + AluSc SINE Alu 232 288 -11 26 30 0 0 chr11 9691406 9691439 -139092033 + AT_rich Low_complexity Low_complexity 1 33 0 2311 123 0 0 chr11 9691532 9691840 -139091632 - AluSx SINE Alu -4 308 1 466 250 57 14 chr11 9692648 9692788 -139090684 + MER5B DNA MER1_type 4 149 -29 216 292 42 31 chr11 9693205 9693301 -139090171 - MIR SINE MIR 0 262 166 1989 131 3 7 chr11 9693947 9694237 -139089235 + AluSx SINE Alu 1 289 -23 205 167 0 0 chr11 9694602 9694638 -139088834 + A-rich Low_complexity Low_complexity 3 38 0 1680 191 7 33 chr11 9694770 9695074 -139088398 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr11 9695588 9695615 -139087857 + AT_rich Low_complexity Low_complexity 1 27 0 1803 181 148 19 chr11 9695782 9696267 -139087205 + LTR10A LTR ERV1 1 548 -61 1709 159 41 21 chr11 9696299 9696589 -139086883 - AluJo SINE Alu -16 296 1 304 326 91 21 chr11 9696616 9696803 -139086669 + L1MEd LINE L1 2 201 -5918 1234 151 139 4 chr11 9696922 9697173 -139086299 + MER49 LTR ERV1 1 285 -638 * 2904 152 96 46 chr11 9697157 9697203 -139086269 + MER4D LTR ERV1 50 92 -811 1673 158 18 14 chr11 9697203 9697488 -139085984 - AluJb SINE Alu -10 302 17 2904 152 96 46 chr11 9697488 9698151 -139085321 + MER4D LTR ERV1 92 893 -10 224 331 0 22 chr11 9698495 9698598 -139084874 + A-rich Low_complexity Low_complexity 1 102 -31 2437 70 0 3 chr11 9698598 9698900 -139084572 + AluY SINE Alu 1 301 -10 224 331 0 22 chr11 9698900 9698932 -139084540 + A-rich Low_complexity Low_complexity 102 133 0 1998 218 110 28 chr11 9698988 9699658 -139083814 - MER50 LTR ERV1 0 734 10 1344 245 24 63 chr11 9699683 9700301 -139083171 + L1MEd LINE L1 2137 2726 -3403 1633 201 10 7 chr11 9700301 9700604 -139082868 + AluJo SINE Alu 1 304 -8 1344 245 24 63 chr11 9700604 9700684 -139082788 + L1MEd LINE L1 2726 2808 -3321 312 231 15 0 chr11 9700684 9700749 -139082723 + MIR SINE MIR 197 262 0 353 93 0 37 chr11 9701010 9701064 -139082408 - L2 LINE L2 -1 3312 3261 900 293 8 16 chr11 9703318 9703567 -139079905 - MIR SINE MIR 0 262 16 2536 37 0 7 chr11 9703902 9704196 -139079276 + AluY SINE Alu 1 292 -19 186 43 0 0 chr11 9704244 9704267 -139079205 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1645 167 48 11 chr11 9704275 9704545 -139078927 - AluJb SINE Alu -32 280 1 2598 40 0 7 chr11 9704946 9705247 -139078225 + AluY SINE Alu 1 299 -12 411 328 162 18 chr11 9705452 9705681 -139077791 + L1ME LINE L1 4869 5130 -1016 6411 120 27 64 chr11 9705698 9706325 -139077147 + Tigger3b DNA MER2_type 2 651 -2377 2092 111 6 44 chr11 9706325 9706641 -139076831 + AluSc SINE Alu 1 304 -5 2114 96 0 61 chr11 9706644 9706957 -139076515 + AluSg1 SINE Alu 1 294 -15 6411 120 27 64 chr11 9706957 9707479 -139075993 + Tigger3b DNA MER2_type 653 1193 -1835 1172 107 45 102 chr11 9707479 9707594 -139075878 - MER30 DNA MER1_type 0 230 110 1958 93 12 0 chr11 9707594 9707842 -139075630 + AluSg SINE Alu 1 251 -59 1172 107 45 102 chr11 9707842 9707864 -139075608 - MER30 DNA MER1_type -120 110 88 2206 100 10 3 chr11 9707864 9708154 -139075318 + AluSg SINE Alu 1 292 -18 1172 107 45 102 chr11 9708154 9708259 -139075213 - MER30 DNA MER1_type -142 88 1 6411 120 27 64 chr11 9708259 9708367 -139075105 + Tigger3b DNA MER2_type 1193 1217 -14 1028 233 82 35 chr11 9708458 9708565 -139074907 + L1ME LINE L1 5258 5358 -804 1714 174 41 0 chr11 9708565 9708858 -139074614 + AluJb SINE Alu 2 306 -6 1028 233 82 35 chr11 9708858 9709203 -139074269 + L1ME LINE L1 5358 5624 -538 369 0 0 0 chr11 9709203 9709244 -139074228 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1028 233 82 35 chr11 9709244 9709274 -139074198 + L1ME LINE L1 5624 5651 -511 649 176 8 15 chr11 9709285 9709417 -139074055 + L1MCb LINE L1 579 923 -5373 717 148 0 25 chr11 9709442 9709564 -139073908 - FLAM_C SINE Alu -24 119 1 2214 124 8 3 chr11 9709564 9709927 -139073545 + L1MCb LINE L1 907 1271 -5293 1383 271 5 0 chr11 9709924 9710350 -139073122 + L1M4 LINE L1 4816 5246 -900 * 1315 166 0 4 chr11 9710350 9710579 -139072893 + L1MC1 LINE L1 6105 6332 -1 236 366 30 0 chr11 9710595 9710726 -139072746 - L2 LINE L2 -1190 2124 1990 2409 93 0 0 chr11 9710726 9711028 -139072444 + AluSc SINE Alu 1 302 -7 2216 128 0 3 chr11 9711340 9711645 -139071827 + AluSx SINE Alu 1 304 -8 1818 171 47 0 chr11 9712145 9712443 -139071029 - AluJo SINE Alu 0 312 1 26 30 0 0 chr11 9712780 9712813 -139070659 + AT_rich Low_complexity Low_complexity 1 33 0 2302 108 0 0 chr11 9712885 9713191 -139070281 - AluSx SINE Alu -6 306 1 333 260 125 82 chr11 9713327 9713535 -139069937 + L2 LINE L2 2237 2453 -861 531 259 89 57 chr11 9713798 9713907 -139069565 - HAL1 LINE L1 -2222 285 181 1852 152 3 59 chr11 9713907 9714230 -139069242 - AluJb SINE Alu -7 305 1 531 259 89 57 chr11 9714230 9714305 -139069167 - HAL1 LINE L1 -2326 181 110 2364 71 0 14 chr11 9714305 9714601 -139068871 - AluY SINE Alu -19 292 1 531 259 89 57 chr11 9714601 9714662 -139068810 - HAL1 LINE L1 -2397 110 31 504 139 0 0 chr11 9714812 9714898 -139068574 - AluSp SINE Alu 0 313 228 1906 170 68 32 chr11 9714898 9715339 -139068133 - LTR2B LTR ERV1 0 490 34 1669 112 4 9 chr11 9715361 9715593 -139067879 - AluSp SINE Alu -82 231 1 226 170 0 0 chr11 9715755 9715802 -139067670 + LTR66 LTR ERVL 394 440 -170 835 197 16 42 chr11 9716569 9716623 -139066849 + MER5A DNA MER1_type 2 56 -133 2287 101 3 0 chr11 9716623 9716931 -139066541 - AluSp SINE Alu -4 309 1 835 197 16 42 chr11 9716931 9717069 -139066403 + MER5A DNA MER1_type 56 189 0 1807 178 3 16 chr11 9717525 9717840 -139065632 + AluJo SINE Alu 1 311 -1 3879 140 18 2 chr11 9718258 9718859 -139064613 + LTR36 LTR ERV1 1 611 0 234 0 0 0 chr11 9718870 9718896 -139064576 + (CAA)n Simple_repeat Simple_repeat 2 27 0 832 192 31 104 chr11 9719669 9719690 -139063782 - MER33 DNA MER1_type -2261 324 303 2245 132 0 52 chr11 9719690 9719986 -139063486 + MER47A DNA MER2_type 1 311 -2012 2183 99 0 0 chr11 9719986 9720292 -139063180 - AluSx SINE Alu 0 306 1 1918 175 0 6 chr11 9720295 9720609 -139062863 - AluJb SINE Alu 0 312 1 2245 132 0 52 chr11 9720609 9720693 -139062779 + MER47A DNA MER2_type 313 366 0 832 192 31 104 chr11 9720693 9720861 -139062611 - MER33 DNA MER1_type -2282 303 165 1988 91 51 7 chr11 9720861 9721136 -139062336 - AluSp SINE Alu -26 287 1 832 192 31 104 chr11 9721136 9721263 -139062209 - MER33 DNA MER1_type -2420 165 30 569 254 47 22 chr11 9722012 9723015 -139060457 + L1ME1 LINE L1 2676 3786 -2360 430 235 130 9 chr11 9723015 9723130 -139060342 + FLAM_C SINE Alu 3 131 -2 569 254 47 22 chr11 9723130 9723392 -139060080 + L1ME1 LINE L1 3786 4040 -2106 1935 225 31 11 chr11 9723437 9724286 -139059186 + L1ME1 LINE L1 4906 5767 -399 7953 104 20 16 chr11 9724286 9725494 -139057978 + HSMAR1 DNA Mariner 11 1223 -64 1460 88 18 14 chr11 9725509 9725726 -139057746 + L1PA10 LINE L1 5950 6167 -1 537 79 0 0 chr11 9725742 9725818 -139057654 + HSMAR1 DNA Mariner 1212 1287 0 639 238 58 56 chr11 9725818 9726171 -139057301 + L1ME1 LINE L1 5781 6005 -161 34944 85 6 34 chr11 9726193 9729529 -139053943 + L1PA6 LINE L1 12 3196 -2958 744 112 26 0 chr11 9729529 9729645 -139053827 + AluY SINE Alu 168 286 -25 34944 85 6 34 chr11 9729645 9732452 -139051020 + L1PA6 LINE L1 3196 6082 -72 447 232 10 0 chr11 9732520 9732619 -139050853 - MSTD LTR MaLR -294 102 3 590 237 29 29 chr11 9732679 9732852 -139050620 + HAL1 LINE L1 1292 1464 -1043 300 311 73 24 chr11 9732872 9733464 -139050008 + L1ME LINE L1 3813 4433 -1713 2259 82 3 7 chr11 9733570 9733875 -139049597 + AluY SINE Alu 1 304 -7 386 348 40 6 chr11 9734369 9734547 -139048925 + L1ME LINE L1 4769 4952 -1194 2049 96 7 7 chr11 9734914 9735233 -139048239 - AluSg SINE Alu 0 319 1 360 259 24 0 chr11 9735328 9735413 -139048059 - L2 LINE L2 0 3313 3227 313 302 42 0 chr11 9735487 9735583 -139047889 + L1ME LINE L1 5494 5593 -528 1718 251 24 57 chr11 9735709 9735959 -139047513 + MER119 DNA MER1_type 6 263 -320 2448 51 0 7 chr11 9735959 9736251 -139047221 + AluY SINE Alu 1 290 -21 1718 251 24 57 chr11 9736251 9736597 -139046875 + MER119 DNA MER1_type 263 582 -1 426 261 96 56 chr11 9736795 9736870 -139046602 + L1ME3A LINE L1 3419 3490 -2656 1702 141 19 58 chr11 9736870 9737183 -139046289 + AluJo SINE Alu 1 301 -11 426 261 96 56 chr11 9737183 9737356 -139046116 + L1ME3A LINE L1 3490 3677 -2469 295 262 47 13 chr11 9737415 9737564 -139045908 + L1ME3A LINE L1 3904 4057 -2089 698 278 98 36 chr11 9737622 9737920 -139045552 + L1ME3A LINE L1 4154 4432 -1714 1557 167 71 0 chr11 9737920 9738189 -139045283 - AluJb SINE Alu -24 288 1 698 278 98 36 chr11 9738189 9738473 -139044999 + L1ME3A LINE L1 4432 4772 -1374 1244 143 0 43 chr11 9738474 9738859 -139044613 + AluJb SINE Alu 91 466 0 1330 285 49 18 chr11 9738878 9739998 -139043474 + L1ME3A LINE L1 4795 5954 -216 3869 170 31 13 chr11 9740397 9740661 -139042811 + L1PA16 LINE L1 4395 4653 -1513 1839 167 3 3 chr11 9740661 9740954 -139042518 + AluJo SINE Alu 2 294 -18 3869 170 31 13 chr11 9740954 9742152 -139041320 + L1PA16 LINE L1 4653 5874 -292 349 207 12 0 chr11 9742154 9742236 -139041236 + L1PA16 LINE L1 6082 6164 -2 2280 109 3 3 chr11 9742276 9742589 -139040883 - AluSp SINE Alu 0 313 1 269 302 55 76 chr11 9743049 9743340 -139040132 + ERVL LTR ERVL 306 590 -5174 503 265 168 5 chr11 9743340 9743525 -139039947 + MLT2F LTR ERVL 1 215 -448 4457 145 48 4 chr11 9743526 9744284 -139039188 + L1MB3 LINE L1 5386 6176 -7 1564 232 50 13 chr11 9744310 9744763 -139038709 - L1MC4 LINE L1 -1122 6920 6431 210 191 0 0 chr11 9744887 9744929 -139038543 + GA-rich Low_complexity Low_complexity 3 44 0 319 324 9 0 chr11 9744997 9745108 -139038364 - L1 LINE L1 -1780 4366 4255 620 316 129 2 chr11 9745204 9745600 -139037872 - L1 LINE L1 -2049 4097 3652 405 108 40 0 chr11 9745767 9745841 -139037631 + L1MA8 LINE L1 6211 6287 -4 485 321 38 11 chr11 9746010 9746194 -139037278 - L3 LINE CR1 -6 1571 1383 223 290 39 29 chr11 9746157 9746262 -139037210 + MER5A DNA MER1_type 19 130 -53 * 206 378 0 14 chr11 9746298 9746372 -139037100 - MER5B DNA MER1_type 0 178 106 218 224 0 0 chr11 9746710 9746759 -139036713 - L2 LINE L2 0 3313 3265 319 321 44 0 chr11 9746859 9746996 -139036476 - L2 LINE L2 -182 3090 2948 193 327 40 59 chr11 9747121 9747323 -139036149 - L2 LINE L2 -560 2754 2557 2148 272 80 25 chr11 9747763 9748077 -139035395 - HAL1 LINE L1 -1716 791 496 330 67 0 0 chr11 9748077 9748122 -139035350 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2148 272 80 25 chr11 9748122 9748556 -139034916 - HAL1 LINE L1 -2011 496 2 2968 79 48 33 chr11 9748656 9749003 -139034469 + L1PB1 LINE L1 5420 5777 -374 2257 106 20 0 chr11 9749003 9749304 -139034168 + AluSg1 SINE Alu 1 307 -2 2968 79 48 33 chr11 9749304 9749410 -139034062 + L1PB1 LINE L1 5777 5880 -271 27 0 0 0 chr11 9749747 9749774 -139033698 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr11 9750520 9750544 -139032928 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 386 256 76 40 chr11 9751104 9751381 -139032091 - L1ME4a LINE L1 -122 5999 5713 1035 282 72 52 chr11 9751875 9752389 -139031083 - L1ME3A LINE L1 -278 5892 5369 21 0 0 0 chr11 9752859 9752880 -139030592 + AT_rich Low_complexity Low_complexity 1 21 0 2224 118 0 0 chr11 9753294 9753598 -139029874 - AluY SINE Alu -7 304 1 2490 24 7 3 chr11 9754193 9754483 -139028989 - AluY SINE Alu -6 305 15 980 199 12 0 chr11 9755827 9755998 -139027474 - FAM SINE Alu -2 173 1 1086 252 84 61 chr11 9756027 9756516 -139026956 - L1ME3A LINE L1 -925 5221 4708 2192 105 0 0 chr11 9756516 9756802 -139026670 - AluSg SINE Alu -24 286 1 1086 252 84 61 chr11 9756802 9757047 -139026425 - L1ME3A LINE L1 -1438 4708 4470 2088 146 0 0 chr11 9759022 9759330 -139024142 + AluSx SINE Alu 1 308 -4 1666 161 11 0 chr11 9759808 9760087 -139023385 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr11 9760588 9760619 -139022853 + AT_rich Low_complexity Low_complexity 1 31 0 1539 139 0 8 chr11 9760712 9760957 -139022515 - L1PB4 LINE L1 -2 6154 5912 2217 83 48 0 chr11 9761137 9761427 -139022045 - AluSp SINE Alu -9 304 1 578 248 45 20 chr11 9761427 9761620 -139021852 - L1MD3 LINE L1 -7 7988 7788 2189 117 0 16 chr11 9761914 9762230 -139021242 - AluSx SINE Alu -1 311 1 365 245 91 7 chr11 9762310 9762453 -139021019 + L1M4 LINE L1 2448 2602 -3544 * 687 159 165 0 chr11 9762451 9762627 -139020845 + L1MB7 LINE L1 5199 5403 -743 3083 163 21 44 chr11 9762648 9762930 -139020542 + L1MB7 LINE L1 5544 5831 -353 2267 69 0 13 chr11 9762930 9763235 -139020237 + AluY SINE Alu 1 301 -10 3083 163 21 44 chr11 9763235 9763478 -139019994 + L1MB7 LINE L1 5831 6078 -106 2174 98 4 0 chr11 9763478 9763753 -139019719 + AluSp SINE Alu 2 277 -36 366 85 0 0 chr11 9763755 9763814 -139019658 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 233 29 29 0 chr11 9763815 9763849 -139019623 + (TA)n Simple_repeat Simple_repeat 1 35 0 3083 163 21 44 chr11 9763849 9763973 -139019499 + L1MB7 LINE L1 6078 6184 0 338 265 143 0 chr11 9764022 9764120 -139019352 + L1ME3A LINE L1 6006 6117 -53 2261 262 173 22 chr11 9764530 9765722 -139017750 + L2 LINE L2 1930 3287 -26 367 358 51 11 chr11 9765858 9766034 -139017438 - L3b LINE CR1 -70 1513 1331 2046 71 4 0 chr11 9766054 9766309 -139017163 - AluY SINE Alu -16 295 40 181 333 72 14 chr11 9766490 9766559 -139016913 + MIR SINE MIR 39 111 -97 281 374 81 17 chr11 9766736 9766910 -139016562 - L3 LINE CR1 -1292 285 101 21 36 0 0 chr11 9767016 9767044 -139016428 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 9767067 9767092 -139016380 + AT_rich Low_complexity Low_complexity 1 25 0 1808 183 3 10 chr11 9767238 9767550 -139015922 + AluJb SINE Alu 1 310 -2 515 291 58 28 chr11 9767562 9767889 -139015583 + L1M4 LINE L1 4589 4925 -1221 693 253 16 31 chr11 9767902 9768096 -139015376 + MIR SINE MIR 25 215 -47 183 42 0 0 chr11 9768096 9768120 -139015352 + (CA)n Simple_repeat Simple_repeat 2 25 0 2250 108 0 7 chr11 9768318 9768624 -139014848 - AluSg SINE Alu -6 304 1 29 0 0 0 chr11 9771332 9771361 -139012111 + AT_rich Low_complexity Low_complexity 1 29 0 1600 194 11 0 chr11 9771818 9772102 -139011370 - AluJo SINE Alu -25 287 1 465 118 24 0 chr11 9772136 9772221 -139011251 + L1MB4 LINE L1 6094 6180 0 274 319 0 0 chr11 9772359 9772431 -139011041 + L2 LINE L2 2552 2623 -691 1113 298 32 34 chr11 9772431 9772898 -139010574 + L2 LINE L2 2848 3313 0 23 0 0 0 chr11 9773539 9773562 -139009910 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 9773726 9773753 -139009719 + (CA)n Simple_repeat Simple_repeat 2 28 0 1804 78 0 41 chr11 9775091 9775336 -139008136 - AluY SINE Alu -76 235 1 6746 69 6 2 chr11 9775336 9776487 -139006985 + L1PA6 LINE L1 5001 6154 0 458 279 46 9 chr11 9776627 9776794 -139006678 - MIR3 SINE MIR -28 180 3 227 176 28 190 chr11 9778303 9778445 -139005027 + MIR SINE MIR 114 232 -30 29 60 0 0 chr11 9778915 9778965 -139004507 + AT_rich Low_complexity Low_complexity 1 50 0 2268 261 69 65 chr11 9779729 9780998 -139002474 + L1MC4 LINE L1 6768 8042 0 1890 225 33 18 chr11 9783478 9783641 -138999831 + L1M4 LINE L1 2710 2869 -3277 1706 197 7 3 chr11 9783641 9783936 -138999536 - AluJo SINE Alu -16 296 1 1890 225 33 18 chr11 9783936 9784372 -138999100 + L1M4 LINE L1 2869 3318 -2828 1588 81 88 59 chr11 9784372 9784644 -138998828 - LTR66 LTR ERVL 0 610 331 253 0 0 57 chr11 9784645 9784673 -138998799 - LTR66 LTR ERVL -210 400 375 244 253 123 12 chr11 9784673 9784816 -138998656 + LTR10B LTR ERV1 1 250 -297 607 189 30 30 chr11 9784886 9785018 -138998454 + LTR10B LTR ERV1 416 547 0 2834 86 0 18 chr11 9785018 9785229 -138998243 - LTR66 LTR ERVL -234 376 174 2200 107 7 0 chr11 9785229 9785529 -138997943 - AluSx SINE Alu -10 302 1 2834 86 0 18 chr11 9785529 9785700 -138997772 - LTR66 LTR ERVL -436 174 1 5095 240 34 20 chr11 9785704 9785959 -138997513 + L1M4 LINE L1 3315 3565 -2581 1431 194 81 6 chr11 9785959 9786279 -138997193 - MER2 DNA MER2_type 0 344 1 5095 240 34 20 chr11 9786279 9787547 -138995925 + L1M4 LINE L1 3565 4859 -1287 234 258 15 15 chr11 9787551 9787617 -138995855 + MIR SINE MIR 196 261 -1 603 258 0 8 chr11 9788145 9788277 -138995195 + MER8 DNA MER2_type 6 136 -103 278 222 16 0 chr11 9788378 9788441 -138995031 + Charlie1 DNA MER1_type 58 121 -2640 * 807 211 26 0 chr11 9788438 9788594 -138994878 + Charlie1 DNA MER1_type 1460 1619 -1142 3379 181 88 25 chr11 9788610 9789387 -138994085 + Charlie1 DNA MER1_type 1809 2652 -109 1981 145 3 3 chr11 9789387 9789683 -138993789 + AluSq SINE Alu 1 296 -17 3379 181 88 25 chr11 9789683 9789800 -138993672 + Charlie1 DNA MER1_type 2652 2760 -1 1890 128 38 85 chr11 9790390 9790788 -138992684 - Tigger7 DNA MER2_type -4 2583 2205 1414 171 75 4 chr11 9790774 9791026 -138992446 - Tigger7 DNA MER2_type -461 272 3 * 302 283 133 18 chr11 9792809 9792922 -138990550 - MIR SINE MIR -63 145 20 207 100 0 0 chr11 9793066 9793096 -138990376 + (TATG)n Simple_repeat Simple_repeat 4 33 0 570 243 79 26 chr11 9793105 9793372 -138990100 - L1ME4a LINE L1 -196 5925 5645 1327 169 3 112 chr11 9793673 9794004 -138989468 + AluJb SINE Alu 1 295 -7 5048 132 24 40 chr11 9794565 9794965 -138988507 + L1PB3 LINE L1 5083 5488 -666 2021 130 33 0 chr11 9794965 9795265 -138988207 - AluSx SINE Alu 0 312 3 5048 132 24 40 chr11 9795265 9795590 -138987882 + L1PB3 LINE L1 5488 5817 -337 432 0 0 0 chr11 9795590 9795638 -138987834 + (CA)n Simple_repeat Simple_repeat 2 49 0 5048 132 24 40 chr11 9795638 9796005 -138987467 + L1PB3 LINE L1 5817 6154 0 2670 201 0 0 chr11 9796171 9796699 -138986773 - L1P LINE L1 -1358 4788 4261 * 10785 119 19 6 chr11 9796697 9798247 -138985225 + L1PA12 LINE L1 1013 2582 -4999 1728 222 98 18 chr11 9798370 9798888 -138984584 + L1ME1 LINE L1 5608 6324 -10 2083 133 3 3 chr11 9799301 9799609 -138983863 - AluSg SINE Alu -2 308 1 1036 175 0 0 chr11 9799692 9799863 -138983609 + FAM SINE Alu 5 175 0 409 100 0 43 chr11 9800005 9800075 -138983397 - AluYb8 SINE Alu -1 307 241 236 202 12 95 chr11 9800023 9800107 -138983365 + AluJo/FRAM SINE Alu 183 259 -43 * 1535 123 54 0 chr11 9800833 9801094 -138982378 + L1MA8 LINE L1 6013 6287 -4 1564 192 3 27 chr11 9801312 9801609 -138981863 - AluJo SINE Alu -22 290 1 256 268 18 0 chr11 9801894 9801950 -138981522 + MER20B DNA MER1_type 84 140 -643 1989 138 0 3 chr11 9802159 9802463 -138981009 + AluSx SINE Alu 3 305 -7 389 353 40 20 chr11 9802834 9803086 -138980386 + L1MEd LINE L1 594 850 -5269 549 309 57 45 chr11 9803108 9803501 -138979971 + L1M3d LINE L1 1 1552 -5475 1344 217 77 68 chr11 9803629 9804173 -138979299 + L1ME2 LINE L1 5500 6102 -62 2575 191 18 0 chr11 9804182 9804678 -138978794 + L1MB7 LINE L1 5652 6156 -28 861 222 199 73 chr11 9804690 9805308 -138978164 + L1MC5 LINE L1 6837 7532 -429 297 211 119 108 chr11 9805416 9805601 -138977871 + L1ME3A LINE L1 5977 6163 -7 252 252 0 87 chr11 9805678 9805781 -138977691 - MLT1J LTR MaLR -58 453 360 232 263 100 25 chr11 9805849 9805929 -138977543 + L2 LINE L2 3186 3271 -1 21 0 0 0 chr11 9806028 9806049 -138977423 + AT_rich Low_complexity Low_complexity 1 21 0 4277 152 10 15 chr11 9807363 9808078 -138975394 - MER50 LTR ERV1 -23 711 1 416 198 0 85 chr11 9808423 9808529 -138974943 + MER34B LTR ERV1 467 583 -2 344 347 41 0 chr11 9808878 9808999 -138974473 - L2 LINE L2 -9 3263 3138 23 0 0 0 chr11 9809232 9809255 -138974217 + AT_rich Low_complexity Low_complexity 1 23 0 223 389 14 0 chr11 9809712 9809784 -138973688 + L2 LINE L2 3101 3173 -99 310 216 227 0 chr11 9810530 9810618 -138972854 + L2 LINE L2 3204 3311 -2 2341 71 0 0 chr11 9811273 9811580 -138971892 + AluY SINE Alu 2 308 0 1763 106 102 0 chr11 9811981 9812246 -138971226 + AluSx SINE Alu 1 292 -20 578 146 50 19 chr11 9812567 9812730 -138970742 + MLT1D LTR MaLR 236 505 0 289 262 61 55 chr11 9812752 9812893 -138970579 - L1MD3 LINE L1 -11 7984 7839 1840 145 0 28 chr11 9812893 9813210 -138970262 - AluJb SINE Alu 0 309 1 289 262 61 55 chr11 9813210 9813231 -138970241 - L1MD3 LINE L1 -156 7839 7820 2052 249 90 84 chr11 9813231 9814151 -138969321 + L1MC4 LINE L1 6084 7093 -808 189 0 0 0 chr11 9814151 9814172 -138969300 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2052 249 90 84 chr11 9814172 9814482 -138968990 + L1MC4 LINE L1 7093 7400 -501 406 301 65 56 chr11 9814458 9814764 -138968708 + L1M4 LINE L1 22 624 -6231 * 1552 277 65 52 chr11 9814960 9815616 -138967856 + L1M4 LINE L1 1004 1650 -5309 1724 176 13 10 chr11 9815616 9815918 -138967554 + AluJo SINE Alu 1 303 -9 1552 277 65 52 chr11 9815918 9816539 -138966933 + L1M4 LINE L1 1650 2312 -4647 1741 182 30 3 chr11 9816539 9816841 -138966631 + AluJb SINE Alu 1 310 -2 1552 277 65 52 chr11 9816841 9816932 -138966540 + L1M4 LINE L1 2312 2400 -4559 7168 95 20 2 chr11 9816989 9818795 -138964677 + L1PA7 LINE L1 4319 6149 -5 13103 158 31 17 chr11 9818991 9822347 -138961125 - MER50-int LTR ERV1 -1323 3894 1 4374 148 14 15 chr11 9822383 9823106 -138960366 - MER50 LTR ERV1 -12 722 1 1969 117 139 115 chr11 9823107 9823603 -138959869 - MER4A LTR ERV1 -156 508 1 220 416 0 0 chr11 9823870 9823971 -138959501 - L2 LINE L2 -619 2695 2595 1935 112 11 0 chr11 9824392 9824669 -138958803 + AluY SINE Alu 1 280 -31 284 221 0 0 chr11 9824744 9824821 -138958651 + L1M4 LINE L1 2982 3058 -4080 383 175 24 22 chr11 9824831 9824922 -138958550 + Tigger5 DNA MER2_type 4 2323 0 297 221 53 0 chr11 9824945 9825040 -138958432 + L1M4 LINE L1 3073 3172 -3785 506 214 87 53 chr11 9825776 9825982 -138957490 + L1MC5 LINE L1 7638 7850 -111 22 0 0 30 chr11 9826214 9826231 -138957241 + AT_rich Low_complexity Low_complexity 1 18 -14 2283 81 0 7 chr11 9826231 9826528 -138956944 + AluY SINE Alu 1 295 -16 22 0 0 30 chr11 9826528 9826543 -138956929 + AT_rich Low_complexity Low_complexity 18 32 0 23 0 0 0 chr11 9827343 9827366 -138956106 + AT_rich Low_complexity Low_complexity 1 23 0 1058 320 139 25 chr11 9827522 9828132 -138955340 + L3 LINE CR1 895 1574 -3 21 36 0 0 chr11 9828209 9828237 -138955235 + AT_rich Low_complexity Low_complexity 1 28 0 2103 112 7 3 chr11 9828436 9828721 -138954751 + AluSx SINE Alu 1 286 -26 480 18 0 0 chr11 9828721 9828778 -138954694 + (CATA)n Simple_repeat Simple_repeat 2 58 0 386 292 93 62 chr11 9829164 9829517 -138953955 - MLT1J LTR MaLR -43 468 105 2544 44 0 0 chr11 9830268 9830561 -138952911 - AluY SINE Alu -18 293 1 216 328 109 17 chr11 9831047 9831166 -138952306 + MIR3 SINE MIR 9 138 -70 27 29 0 0 chr11 9831256 9831290 -138952182 + AT_rich Low_complexity Low_complexity 1 34 0 2398 75 0 3 chr11 9831369 9831676 -138951796 + AluSg SINE Alu 1 306 -4 415 217 0 0 chr11 9831691 9831783 -138951689 - MER113 DNA MER1_type? -415 106 15 2150 109 3 31 chr11 9832101 9832421 -138951051 + AluSq SINE Alu 3 313 0 2199 115 0 13 chr11 9832999 9833304 -138950168 - AluSx SINE Alu -11 301 1 2669 33 0 3 chr11 9833561 9833866 -138949606 - AluY SINE Alu -7 304 1 229 313 52 10 chr11 9834676 9834772 -138948700 + MIR3 SINE MIR 103 202 -6 670 130 0 0 chr11 9835887 9835987 -138947485 + L1PB3 LINE L1 6041 6140 -14 25 83 0 0 chr11 9835990 9836050 -138947422 + AT_rich Low_complexity Low_complexity 1 60 0 247 283 0 0 chr11 9836947 9837007 -138946465 + MIR3 SINE MIR 146 205 -3 584 248 50 0 chr11 9837969 9838110 -138945362 - MIR3 SINE MIR -23 185 38 14257 197 58 10 chr11 9838605 9842437 -138941035 - L1PB1 LINE L1 0 6867 2602 2058 133 0 10 chr11 9842437 9842755 -138940717 + AluSx SINE Alu 1 312 0 14257 197 58 10 chr11 9842755 9845485 -138937987 - L1PB1 LINE L1 -4265 2602 6 1149 163 32 0 chr11 9846596 9846817 -138936655 - L1PA16 LINE L1 -9 6157 5930 2070 76 73 0 chr11 9847195 9847470 -138936002 + AluY SINE Alu 2 296 -15 1697 139 12 111 chr11 9847624 9847780 -138935692 + AluJo SINE Alu 1 108 -204 2303 102 7 0 chr11 9847780 9848074 -138935398 + AluSx SINE Alu 1 296 -16 1697 139 12 111 chr11 9848074 9848249 -138935223 + AluJo SINE Alu 108 299 -13 22 0 0 0 chr11 9848654 9848676 -138934796 + AT_rich Low_complexity Low_complexity 1 22 0 375 198 57 47 chr11 9848773 9848879 -138934593 - MIR SINE MIR -20 242 136 1771 117 0 12 chr11 9849045 9849302 -138934170 - AluJb SINE Alu -14 298 45 594 174 8 25 chr11 9849303 9849424 -138934048 + AluJb SINE Alu 189 307 -5 201 222 32 63 chr11 9849595 9849658 -138933814 - L2 LINE L2 -1 3312 3252 1914 162 0 19 chr11 9850549 9850858 -138932614 - AluJo SINE Alu -9 303 1 8609 108 35 3 chr11 9951208 9952726 -138830746 + MER57-int LTR ERV1 5546 7148 -389 600 123 44 0 chr11 9952726 9952840 -138830632 + LTR54B LTR ERV1 3 121 -377 198 0 0 0 chr11 9953593 9953615 -138829857 + (TA)n Simple_repeat Simple_repeat 2 23 0 341 335 74 7 chr11 9953701 9954076 -138829396 + LTR16B LTR ERVL 18 455 -8 195 235 0 0 chr11 9954764 9954798 -138828674 + L2 LINE L2 3008 3041 -272 985 105 42 0 chr11 9955298 9955441 -138828031 + AluSp SINE Alu 1 149 -164 6956 157 49 34 chr11 9955544 9956250 -138827222 - MER51-int LTR ERV1 -2478 5338 4644 2324 85 0 3 chr11 9956250 9956555 -138826917 - AluY SINE Alu -7 304 1 6956 157 49 34 chr11 9956555 9957421 -138826051 - MER51-int LTR ERV1 -3172 4644 2410 1266 150 19 0 chr11 9957421 9957634 -138825838 - L1M1 LINE L1 -7333 232 16 2068 115 0 50 chr11 9957648 9957971 -138825501 - AluSx SINE Alu -5 307 1 593 246 85 71 chr11 9957998 9958282 -138825190 - L1M4 LINE L1 -2283 3863 3570 1462 193 27 48 chr11 9958282 9958577 -138824895 - AluJo SINE Alu -23 289 1 593 246 85 71 chr11 9958577 9958715 -138824757 - L1M4 LINE L1 -2576 3570 3435 2226 117 7 0 chr11 9958789 9959098 -138824374 + AluSq SINE Alu 3 313 0 3560 227 26 62 chr11 9959100 9960003 -138823469 - L1MA10 LINE L1 -44 6992 6058 724 236 6 13 chr11 9960003 9960160 -138823312 - FAM SINE Alu -19 156 1 3560 227 26 62 chr11 9960160 9960269 -138823203 - L1MA10 LINE L1 -978 6058 6031 1815 168 7 0 chr11 9960269 9960567 -138822905 - AluJb SINE Alu -12 300 1 3560 227 26 62 chr11 9960567 9960752 -138822720 - L1MA10 LINE L1 -1005 6031 5841 2350 196 35 2 chr11 9960748 9961268 -138822204 + L1 LINE L1 4595 5131 -1015 * 5136 238 60 10 chr11 9961268 9963238 -138820234 - L1MA10 LINE L1 -2289 4559 2493 303 321 63 79 chr11 9963283 9963473 -138819999 - L1MA10 LINE L1 -5454 1395 1209 606 249 143 19 chr11 9963684 9964052 -138819420 - L1M4 LINE L1 -2689 3457 3030 2037 128 7 10 chr11 9964052 9964349 -138819123 - AluSx SINE Alu -16 296 1 606 249 143 19 chr11 9964349 9964398 -138819074 - L1M4 LINE L1 -3116 3030 2988 599 220 0 0 chr11 9964498 9964618 -138818854 + AluJb SINE Alu 182 301 0 1360 216 7 38 chr11 9964698 9964989 -138818483 + AluJo SINE Alu 1 282 -30 2240 87 0 20 chr11 9964989 9965289 -138818183 - AluSc SINE Alu -13 296 3 1855 151 0 0 chr11 9965628 9965906 -138817566 + AluSx SINE Alu 35 312 0 513 230 8 50 chr11 9966129 9966394 -138817078 - L1MA10 LINE L1 -5 6297 5916 575 250 0 0 chr11 9966423 9966555 -138816917 - L1ME LINE L1 -370 5796 5665 296 134 41 103 chr11 9966621 9966655 -138816817 + L1M4 LINE L1 2271 2306 -3840 1790 184 0 7 chr11 9966655 9966960 -138816512 + AluJb SINE Alu 1 303 -9 296 134 41 103 chr11 9966960 9967022 -138816450 + L1M4 LINE L1 2306 2361 -3785 227 263 59 48 chr11 9967023 9967160 -138816312 + L1M4 LINE L1 2390 2531 -3615 2198 138 0 0 chr11 9967160 9967472 -138816000 + AluSx SINE Alu 1 312 0 227 263 59 48 chr11 9967472 9967520 -138815952 + L1M4 LINE L1 2531 2577 -3569 332 248 8 0 chr11 9967568 9967685 -138815787 + (TATATG)n Simple_repeat Simple_repeat 3 120 0 714 276 27 0 chr11 9967697 9967998 -138815474 + L1M4 LINE L1 2670 2978 -3168 909 35 0 0 chr11 9969447 9969560 -138813912 - L1P LINE L1 -6033 113 1 11434 156 33 19 chr11 9969565 9969739 -138813733 + L1MA3 LINE L1 2746 2916 -3389 2105 130 0 3 chr11 9969739 9970040 -138813432 + AluSx SINE Alu 1 300 -12 11434 156 33 19 chr11 9970040 9970054 -138813418 + L1MA3 LINE L1 2916 2928 -3377 2244 89 3 3 chr11 9970054 9970347 -138813125 + AluSx SINE Alu 1 293 -19 11434 156 33 19 chr11 9970347 9973662 -138809810 + L1MA3 LINE L1 2928 6305 0 597 260 40 35 chr11 9974448 9974648 -138808824 - L2 LINE L2 -4 3309 3109 2218 122 0 0 chr11 9974673 9974976 -138808496 - AluSx SINE Alu -9 303 1 231 36 0 0 chr11 9975115 9975143 -138808329 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1095 199 5 23 chr11 9975145 9975361 -138808111 - AluJb SINE Alu -31 281 70 252 0 0 0 chr11 9975724 9975752 -138807720 + (TG)n Simple_repeat Simple_repeat 1 28 0 1917 154 4 0 chr11 9975753 9976033 -138807439 - AluSx SINE Alu -31 281 1 214 358 0 81 chr11 9976413 9976536 -138806936 - L3 LINE CR1 -7 1570 1458 383 297 18 27 chr11 9976555 9976666 -138806806 - L2 LINE L2 -4 3268 3159 324 319 183 0 chr11 9978356 9978547 -138804925 + L3 LINE CR1 766 991 -586 504 273 36 7 chr11 9978788 9978927 -138804545 + MIR SINE MIR 7 149 -113 1925 256 109 24 chr11 9979250 9980140 -138803332 + L1M4 LINE L1 2654 3467 -2679 252 0 0 0 chr11 9980140 9980168 -138803304 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2097 91 29 4 chr11 9980171 9980446 -138803026 - AluSx SINE Alu -30 282 1 1925 256 109 24 chr11 9980446 9980518 -138802954 + L1M4 LINE L1 3468 3702 -2444 2695 234 36 9 chr11 9980524 9981319 -138802153 + L1M4 LINE L1 3904 4720 -1426 590 269 145 28 chr11 9981371 9981620 -138801852 - MER21B LTR ERV1 -57 806 529 655 244 134 38 chr11 9981660 9981870 -138801602 - MER21B LTR ERV1 -553 310 122 2199 127 30 43 chr11 9981870 9982239 -138801233 + THE1B LTR MaLR 1 364 0 11691 94 4 1 chr11 9982240 9983814 -138799658 + THE1B-int LTR MaLR 2 1580 0 2378 116 30 25 chr11 9983814 9984176 -138799296 + THE1B LTR MaLR 1 364 0 655 244 134 38 chr11 9984176 9984200 -138799272 - MER21B LTR ERV1 -740 123 50 306 276 13 0 chr11 9984204 9984280 -138799192 - MER21B LTR ERV1 -768 95 19 4330 118 15 126 chr11 9984301 9985852 -138797620 + pTR5 LTR ERV1 743 2606 0 360 240 13 0 chr11 9985857 9985932 -138797540 - MER21B LTR ERV1 -773 90 15 956 221 49 49 chr11 9985955 9986304 -138797168 + L1M4 LINE L1 4796 5144 -1002 257 360 54 27 chr11 9986797 9986944 -138796528 - MIR3 SINE MIR -57 151 1 6606 104 77 14 chr11 9987293 9988431 -138795041 + L1M1 LINE L1 2337 3546 -4019 1303 213 39 3 chr11 9988434 9988716 -138794756 + L1M1 LINE L1 3870 4161 -3404 300 62 31 31 chr11 9988725 9988790 -138794682 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 41814 35 21 2 chr11 9988793 9994722 -138788750 - L1PA3 LINE L1 -4 6151 103 270 174 0 0 chr11 9994822 9994868 -138788604 + Alu SINE Alu 250 295 -7 791 230 97 18 chr11 9994880 9995106 -138788366 - L1ME LINE L1 -640 5526 5283 1848 140 9 43 chr11 9995142 9995154 -138788318 - AluJo SINE Alu 0 312 301 204 40 0 0 chr11 9995154 9995179 -138788293 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1848 140 9 43 chr11 9995179 9995355 -138788117 - AluJo SINE Alu -11 301 137 2341 59 45 0 chr11 9995355 9995641 -138787831 - AluY SINE Alu -12 299 1 1848 140 9 43 chr11 9995641 9995773 -138787699 - AluJo SINE Alu -175 137 2 23 0 0 0 chr11 9995930 9995953 -138787519 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 9996254 9996299 -138787173 + AT_rich Low_complexity Low_complexity 1 45 0 508 261 151 23 chr11 9996663 9996881 -138786591 - MIR SINE MIR 0 262 17 1613 191 7 17 chr11 9997667 9997966 -138785506 + AluJo SINE Alu 1 296 -16 231 36 0 0 chr11 9997966 9997994 -138785478 + (TG)n Simple_repeat Simple_repeat 2 29 0 294 279 38 0 chr11 9998001 9998080 -138785392 - MER103 DNA DNA -47 119 38 1324 154 154 8 chr11 9998084 9998351 -138785121 - AluSg1 SINE Alu -3 306 1 1498 188 32 29 chr11 9998375 9998684 -138784788 - AluJb SINE Alu -2 310 1 491 295 26 3 chr11 9998858 9999058 -138784414 + MIR SINE MIR 1 260 -2 226 309 93 21 chr11 10000209 10000306 -138783166 + MIR SINE MIR 36 139 -69 4830 153 32 13 chr11 10000689 10001127 -138782345 - L1MA8 LINE L1 0 6291 5863 2005 130 27 10 chr11 10001127 10001426 -138782046 - AluSx SINE Alu -4 308 5 4830 153 32 13 chr11 10001426 10001652 -138781820 - L1MA8 LINE L1 -428 5863 5643 1828 131 44 34 chr11 10001652 10001950 -138781522 - AluJb SINE Alu -8 304 4 4830 153 32 13 chr11 10001950 10002190 -138781282 - L1MA8 LINE L1 -648 5643 5369 230 206 26 153 chr11 10002759 10002948 -138780524 - HAL1 LINE L1 0 2507 2343 2761 117 7 32 chr11 10002994 10003206 -138780266 - MER57B LTR ERV1 -10 424 227 2495 60 0 22 chr11 10003206 10003523 -138779949 - AluY SINE Alu -1 310 1 2761 117 7 32 chr11 10003523 10003745 -138779727 - MER57B LTR ERV1 -207 227 1 588 90 0 22 chr11 10003869 10003958 -138779514 + AluJb SINE Alu 213 299 -13 2664 223 132 18 chr11 10003962 10004771 -138778701 + L1HS LINE L1 5465 7992 -3 2261 99 0 0 chr11 10004810 10005103 -138778369 - AluY SINE Alu -17 294 2 1283 194 55 22 chr11 10005146 10005324 -138778148 - AluJo SINE Alu -6 306 114 189 0 0 0 chr11 10005324 10005345 -138778127 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1283 194 55 22 chr11 10005345 10005439 -138778033 - AluJo SINE Alu -198 114 25 857 231 9 0 chr11 10005447 10005663 -138777809 + Charlie2a DNA MER1_type 1755 1972 -890 2240 103 13 0 chr11 10005782 10006083 -138777389 + AluSx SINE Alu 1 305 -7 257 308 28 75 chr11 10006881 10006988 -138776484 - L2 LINE L2 -49 3223 3122 427 227 177 14 chr11 10007142 10007283 -138776189 - MIR SINE MIR -8 254 91 216 216 52 113 chr11 10007409 10007506 -138775966 - L2 LINE L2 -46 3267 3177 2741 198 12 14 chr11 10007960 10008551 -138774921 - L1MB3 LINE L1 0 6183 5594 22 35 0 0 chr11 10008554 10008583 -138774889 + AT_rich Low_complexity Low_complexity 1 29 0 346 301 135 31 chr11 10008798 10009124 -138774348 + L1MC/D LINE L1 3127 3486 -2660 2384 182 44 14 chr11 10009136 10009637 -138773835 + L1MD3 LINE L1 7455 7970 -25 361 343 83 6 chr11 10009861 10010030 -138773442 + L1MC/D LINE L1 3718 3899 -2247 2442 72 0 10 chr11 10010057 10010364 -138773108 - AluSq SINE Alu -9 304 1 21 36 0 0 chr11 10010398 10010426 -138773046 + AT_rich Low_complexity Low_complexity 1 28 0 1022 194 24 65 chr11 10010533 10010873 -138772599 - LTR37B LTR ERV1 -11 457 132 330 284 140 53 chr11 10010976 10011240 -138772232 + L1MC/D LINE L1 5273 5559 -2249 366 221 10 0 chr11 10011527 10011611 -138771861 - MER31B LTR ERV1 -89 377 293 26 50 0 0 chr11 10011642 10011682 -138771790 + AT_rich Low_complexity Low_complexity 1 40 0 505 223 0 0 chr11 10012095 10012198 -138771274 + MER3 DNA MER1_type 1 103 -106 489 175 10 52 chr11 10012788 10012885 -138770587 + MER21B LTR ERV1 1 93 -770 2843 248 63 11 chr11 10012904 10013649 -138769823 + MER21B LTR ERV1 19 802 -61 1929 98 4 4 chr11 10015929 10016185 -138767287 - AluSp SINE Alu -18 295 40 418 230 30 30 chr11 10016325 10016460 -138767012 + L1M4 LINE L1 4500 4634 -1512 2409 69 0 7 chr11 10016465 10016771 -138766701 - AluY SINE Alu -7 304 1 1771 170 3 3 chr11 10016958 10017263 -138766209 + AluJb SINE Alu 1 305 0 1794 277 69 5 chr11 10017727 10018280 -138765192 - MLT1G LTR MaLR -2 588 1 6201 147 15 5 chr11 10018527 10020399 -138763073 + L1PA13 LINE L1 4191 6072 -91 985 142 0 35 chr11 10020514 10020683 -138762789 + FRAM SINE Alu 14 176 0 43787 39 6 1 chr11 10020773 10026896 -138756576 + L1PA4 LINE L1 2 6152 -3 231 275 11 22 chr11 10027226 10027317 -138756155 - L1ME LINE L1 -455 5735 5646 818 312 152 21 chr11 10028260 10028938 -138754534 - L2 LINE L2 -5 3308 2535 320 229 0 0 chr11 10028938 10028999 -138754473 + Tigger2 DNA MER2_type 2 62 -2656 283 321 38 31 chr11 10029129 10029288 -138754184 + MIR SINE MIR 97 256 -6 276 208 119 40 chr11 10029579 10029680 -138753792 - MLT1J2 LTR MaLR -305 145 37 669 292 165 23 chr11 10030940 10031334 -138752138 - MLT1J2 LTR MaLR 0 450 1 28 0 0 0 chr11 10031727 10031755 -138751717 + AT_rich Low_complexity Low_complexity 1 28 0 2407 87 3 0 chr11 10033498 10033810 -138749662 + AluSp SINE Alu 1 313 0 1294 258 65 4 chr11 10034501 10034990 -138748482 + L1M4 LINE L1 2714 3232 -2914 1177 219 43 41 chr11 10035017 10035409 -138748063 - L1ME LINE L1 -1109 5106 4714 279 277 57 14 chr11 10035412 10035553 -138747919 - L1ME LINE L1 -1787 4428 4282 260 287 47 15 chr11 10035555 10035756 -138747716 - L1ME LINE L1 -5040 1165 956 386 329 36 15 chr11 10035798 10035935 -138747537 - L1ME LINE L1 -5474 922 783 2179 175 103 119 chr11 10037105 10037868 -138745604 + MER52A LTR ERV1 1 853 -688 5060 173 7 1 chr11 10037868 10038819 -138744653 + L1P LINE L1 4359 5315 -831 1754 98 0 4 chr11 10038823 10039058 -138744414 + Charlie3 DNA MER1_type 2469 2702 -8 4208 205 166 15 chr11 10039058 10040329 -138743143 + L1 LINE L1 2621 4166 -1980 5120 75 20 20 chr11 10040329 10040852 -138742620 + LTR8 LTR ERV1 1 526 -165 2197 82 43 0 chr11 10040852 10041132 -138742340 + AluY SINE Alu 1 292 -19 5120 75 20 20 chr11 10041132 10041299 -138742173 + LTR8 LTR ERV1 525 691 0 4208 205 166 15 chr11 10041299 10041450 -138742022 + L1 LINE L1 4166 4293 -1853 288 250 0 0 chr11 10041672 10041732 -138741740 + GA-rich Low_complexity Low_complexity 3 62 0 436 174 46 28 chr11 10041741 10041850 -138741622 + L1ME4a LINE L1 5962 6072 -49 281 331 45 6 chr11 10041970 10042127 -138741345 + L2 LINE L2 2886 3048 -224 2139 117 7 0 chr11 10042149 10042439 -138741033 + AluSx SINE Alu 14 305 -7 369 282 33 98 chr11 10042736 10042934 -138740538 + MLT1J LTR MaLR 1 221 -289 1258 179 68 64 chr11 10042939 10043235 -138740237 + AluJo SINE Alu 5 301 -11 228 313 17 108 chr11 10043343 10043519 -138739953 + MLT1J LTR MaLR 342 501 -10 21 0 0 0 chr11 10043817 10043838 -138739634 + AT_rich Low_complexity Low_complexity 1 21 0 306 224 0 0 chr11 10044749 10044807 -138738665 - MIR SINE MIR -24 238 181 2402 90 0 3 chr11 10045027 10045328 -138738144 - AluSq SINE Alu -13 300 1 742 176 55 48 chr11 10045332 10045497 -138737975 - FRAM SINE Alu 0 166 1 2295 94 0 13 chr11 10045649 10045958 -138737514 - AluSq SINE Alu -8 305 1 1268 250 89 39 chr11 10046482 10046922 -138736550 - MLT1C LTR MaLR -5 462 1 622 137 21 0 chr11 10047189 10047311 -138736161 - FLAM_C SINE Alu 0 144 21 499 70 0 0 chr11 10047312 10047383 -138736089 - Alu SINE Alu -8 304 234 749 168 0 0 chr11 10047392 10047517 -138735955 - FLAM_C SINE Alu -18 125 1 24 0 0 0 chr11 10048828 10048852 -138734620 + AT_rich Low_complexity Low_complexity 1 24 0 2326 91 0 0 chr11 10049691 10049987 -138733485 - AluSx SINE Alu -5 307 12 303 28 0 0 chr11 10051352 10051388 -138732084 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2123 107 4 0 chr11 10051393 10051673 -138731799 - AluSx SINE Alu -30 282 2 1429 174 97 0 chr11 10051676 10051958 -138731514 - AluJb SINE Alu 0 307 1 23 33 0 0 chr11 10051961 10051991 -138731481 + AT_rich Low_complexity Low_complexity 1 30 0 293 244 24 24 chr11 10052203 10052285 -138731187 - L1M4 LINE L1 -688 5496 5415 2456 62 3 10 chr11 10052338 10052647 -138730825 - AluY SINE Alu -1 310 4 2362 143 33 21 chr11 10052754 10053182 -138730290 + Tigger2a DNA MER2_type 1 433 -1 29 78 0 0 chr11 10053205 10053269 -138730203 + AT_rich Low_complexity Low_complexity 1 64 0 225 279 0 0 chr11 10053278 10053339 -138730133 - L1P2 LINE L1 -397 5758 5698 850 227 0 0 chr11 10053436 10053590 -138729882 + FRAM SINE Alu 1 154 -12 891 231 40 27 chr11 10053590 10053807 -138729665 + MIR SINE MIR 15 236 -26 303 332 48 48 chr11 10053975 10054225 -138729247 + MLT1K LTR MaLR 230 479 -109 377 276 10 0 chr11 10054228 10054326 -138729146 - L1ME LINE L1 -511 5610 5512 182 351 152 12 chr11 10055819 10055990 -138727482 + L2 LINE L2 2426 2620 -694 369 259 114 11 chr11 10055997 10056226 -138727246 - MLT1J LTR MaLR -4 507 211 321 47 0 0 chr11 10056226 10056269 -138727203 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 1930 130 7 18 chr11 10056269 10056553 -138726919 - AluSx SINE Alu -29 283 3 225 94 0 0 chr11 10056657 10056689 -138726783 + (CAT)n Simple_repeat Simple_repeat 2 33 0 443 256 55 91 chr11 10057090 10057289 -138726183 + MIR SINE MIR 7 198 -64 1580 149 0 102 chr11 10057343 10057665 -138725807 + AluJb SINE Alu 2 290 -22 6505 69 8 3 chr11 10057907 10058762 -138724710 + L1PA7 LINE L1 5285 6143 -11 28 29 0 0 chr11 10058762 10058797 -138724675 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 75 0 chr11 10058797 10058890 -138724582 + L2 LINE L2 3169 3268 -4 23 0 0 0 chr11 10060349 10060372 -138723100 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 10060713 10060736 -138722736 + AT_rich Low_complexity Low_complexity 1 23 0 2187 204 30 22 chr11 10061358 10061857 -138721615 - L1ME2 LINE L1 -146 6018 5516 3917 166 51 10 chr11 10062718 10063419 -138720053 - MER44D DNA MER2_type -3 602 1 555 146 0 10 chr11 10063955 10064058 -138719414 + L1MB2 LINE L1 5394 5495 -676 1018 116 0 7 chr11 10064061 10064207 -138719265 + AluSq/x SINE Alu 1 145 -167 2366 84 3 6 chr11 10064207 10064518 -138718954 + AluSg SINE Alu 1 310 0 3350 174 34 25 chr11 10064520 10065194 -138718278 + L1MB2 LINE L1 5491 6170 -1 408 276 39 31 chr11 10065197 10065324 -138718148 - MER5B DNA MER1_type -50 128 1 181 87 22 43 chr11 10066177 10066223 -138717249 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 10066538 10066581 -138716891 + AT_rich Low_complexity Low_complexity 1 43 0 2305 106 0 0 chr11 10067665 10067968 -138715504 - AluSx SINE Alu -9 303 1 227 371 24 67 chr11 10068410 10068620 -138714852 - L2 LINE L2 -420 2894 2694 2485 59 0 10 chr11 10068935 10069242 -138714230 - AluY SINE Alu -7 304 1 238 254 48 0 chr11 10069328 10069391 -138714081 - HsTC2 DNA Tc2 -1816 82 17 269 259 73 88 chr11 10070106 10070380 -138713092 + L1MEd LINE L1 569 838 -5281 453 276 32 40 chr11 10070604 10070854 -138712618 + L1MEd LINE L1 1010 1257 -4862 815 230 55 32 chr11 10070878 10071095 -138712377 - MIR SINE MIR 0 262 41 372 375 7 28 chr11 10071463 10071607 -138711865 + L2 LINE L2 3132 3272 0 28 0 0 0 chr11 10071720 10071748 -138711724 + AT_rich Low_complexity Low_complexity 1 28 0 1894 164 0 0 chr11 10071834 10072139 -138711333 + AluJo SINE Alu 1 305 -7 2416 122 8 19 chr11 10072541 10072909 -138710563 - THE1B LTR MaLR 0 364 1 2180 117 0 3 chr11 10073234 10073534 -138709938 - AluSx SINE Alu -13 299 1 23 33 0 0 chr11 10073921 10073951 -138709521 + AT_rich Low_complexity Low_complexity 1 30 0 2793 13 0 0 chr11 10076304 10076611 -138706861 + AluY SINE Alu 1 307 -4 2558 230 56 42 chr11 10077046 10077223 -138706249 - L1ME1 LINE L1 -47 6119 5946 1436 226 81 25 chr11 10077223 10077665 -138705807 + MLT1C LTR MaLR 1 467 0 2558 230 56 42 chr11 10077665 10078478 -138704994 - L1ME1 LINE L1 -220 5946 5114 2037 104 3 16 chr11 10078478 10078785 -138704687 - AluSx SINE Alu -9 303 1 2558 230 56 42 chr11 10078785 10078860 -138704612 - L1ME1 LINE L1 -1052 5114 5042 333 217 41 152 chr11 10078887 10078927 -138704545 - L1ME1 LINE L1 -10 6156 6113 1032 144 0 0 chr11 10078927 10079087 -138704385 + L1PA16 LINE L1 5988 6147 -19 333 217 41 152 chr11 10079087 10079336 -138704136 - L1ME1 LINE L1 -53 6113 5899 302 326 39 54 chr11 10079395 10079524 -138703948 - LTR67 LTR ERVL -386 171 45 964 258 32 0 chr11 10079979 10080227 -138703245 + L1M4 LINE L1 3584 3839 -2307 443 156 0 0 chr11 10080288 10080365 -138703107 + L1M4b LINE L1 95 171 -6688 2621 182 53 0 chr11 10080366 10080838 -138702634 + L1M4b LINE L1 595 1091 -5868 586 259 35 6 chr11 10080840 10081014 -138702458 + L1 LINE L1 2685 2863 -3283 1506 197 3 23 chr11 10081025 10081330 -138702142 - AluJo SINE Alu -13 299 1 10133 108 29 25 chr11 10081337 10083091 -138700381 - HUERS-P1 LTR ERV1 -1327 5271 3060 10107 101 13 67 chr11 10083078 10083436 -138700036 - HUERS-P1 LTR ERV1 -4659 1604 1228 * 297 0 0 0 chr11 10083436 10083469 -138700003 + (CA)n Simple_repeat Simple_repeat 2 34 0 10107 101 13 67 chr11 10083469 10084806 -138698666 - HUERS-P1 LTR ERV1 -5035 1228 1 448 162 0 0 chr11 10084806 10084874 -138698598 - LTR8 LTR ERV1 0 691 624 648 125 0 0 chr11 10084976 10085072 -138698400 + Tigger2 DNA MER2_type 649 744 -1974 1079 156 147 0 chr11 10085137 10085208 -138698264 + Tigger2 DNA MER2_type 2462 2521 -197 450 0 0 0 chr11 10085208 10085258 -138698214 + (TA)n Simple_repeat Simple_repeat 1 50 0 1079 156 147 0 chr11 10085258 10085410 -138698062 + Tigger2 DNA MER2_type 2521 2718 0 182 355 0 0 chr11 10085410 10085472 -138698000 - L2 LINE L2 -777 2537 2476 24 32 0 0 chr11 10085690 10085721 -138697751 + AT_rich Low_complexity Low_complexity 1 31 0 852 85 78 0 chr11 10085776 10085905 -138697567 - MER85 DNA T2_type 0 139 1 3031 248 42 45 chr11 10086034 10087065 -138696407 - L1ME LINE L1 -5041 1029 2 2145 115 20 7 chr11 10087240 10087536 -138695936 + AluSx SINE Alu 1 300 -12 402 302 65 103 chr11 10087536 10088250 -138695222 - L2 LINE L2 -107 3165 2456 2458 109 3 35 chr11 10088253 10088628 -138694844 + THE1B LTR MaLR 2 364 0 10527 98 32 38 chr11 10088628 10090218 -138693254 + THE1B-int LTR MaLR 1 1580 0 2400 98 0 70 chr11 10090221 10090458 -138693014 + THE1B LTR MaLR 4 205 -159 2075 121 10 14 chr11 10090458 10090755 -138692717 + AluSx SINE Alu 1 296 -16 2400 98 0 70 chr11 10090755 10090905 -138692567 + THE1B LTR MaLR 205 364 0 244 287 57 25 chr11 10091417 10091539 -138691933 - HAL1b LINE L1 -438 910 785 238 305 0 0 chr11 10091592 10091651 -138691821 - HAL1b LINE L1 -447 901 843 2185 105 0 0 chr11 10091785 10092071 -138691401 - AluSx SINE Alu -26 286 1 296 269 93 83 chr11 10092202 10092395 -138691077 + L3 LINE CR1 1219 1413 -164 322 258 206 7 chr11 10092810 10092965 -138690507 - L2 LINE L2 -542 2772 2587 807 129 0 0 chr11 10093019 10093135 -138690337 - AluJb SINE Alu -12 300 185 2293 97 0 0 chr11 10094009 10094318 -138689154 - AluY SINE Alu -2 309 1 1097 162 65 51 chr11 10094354 10094570 -138688902 + MER20 DNA MER1_type 1 219 0 466 347 50 8 chr11 10094986 10095343 -138688129 + ERVL LTR ERVL 869 1240 -4524 2340 86 3 0 chr11 10095598 10095890 -138687582 - AluSc SINE Alu -16 293 1 1750 321 83 48 chr11 10096108 10097365 -138686107 + ERVL LTR ERVL 1800 3099 -2665 2306 102 0 3 chr11 10097624 10097929 -138685543 - AluSq SINE Alu -9 304 1 743 261 74 110 chr11 10098066 10098317 -138685155 + MLT1J LTR MaLR 3 227 -284 1846 156 0 31 chr11 10098317 10098637 -138684835 - AluJb SINE Alu -2 310 1 743 261 74 110 chr11 10098637 10098913 -138684559 + MLT1J LTR MaLR 227 511 0 192 380 8 25 chr11 10098913 10099034 -138684438 - L2 LINE L2 -873 2441 2323 453 265 184 14 chr11 10100457 10100604 -138682868 - MIR3 SINE MIR -16 192 21 3227 199 88 53 chr11 10101270 10102739 -138680733 - L1MDb LINE L1 -4487 1919 407 2321 275 39 2 chr11 10102712 10103334 -138680138 - L1MDb LINE L1 -5753 656 12 * 628 111 10 0 chr11 10103352 10103451 -138680021 - L1MB7 LINE L1 -15 6169 6070 204 40 0 0 chr11 10103451 10103476 -138679996 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1629 123 0 8 chr11 10103485 10103737 -138679735 - L1PA10 LINE L1 -11 6157 5908 1372 144 35 42 chr11 10103738 10103990 -138679482 - L1MB7 LINE L1 -106 6078 5827 2081 89 3 73 chr11 10103990 10104305 -138679167 - AluY SINE Alu -18 293 1 1372 144 35 42 chr11 10104305 10104364 -138679108 - L1MB7 LINE L1 -357 5827 5769 623 241 85 66 chr11 10104355 10105837 -138677635 - L1MEc LINE L1 -4760 1636 36 * 2373 57 0 10 chr11 10105860 10106156 -138677316 - AluY SINE Alu -18 293 1 292 355 33 44 chr11 10106168 10106441 -138677031 - L2 LINE L2 -540 2774 2505 243 132 0 0 chr11 10106775 10106813 -138676659 - Alu SINE Alu -9 299 262 1064 42 0 0 chr11 10106816 10106934 -138676538 - AluSq/x SINE Alu -182 130 13 310 328 178 35 chr11 10107990 10108328 -138675144 + L3 LINE CR1 726 1111 -466 550 256 83 22 chr11 10108352 10108532 -138674940 - MIR SINE MIR -56 206 16 343 296 0 0 chr11 10108593 10108674 -138674798 - FRAM/FAM SINE Alu -88 78 1 840 116 6 110 chr11 10108675 10108848 -138674624 - L1M3 LINE L1 -500 5671 5517 855 173 105 0 chr11 10108851 10109013 -138674459 - AluJo SINE Alu -133 179 1 13143 129 59 19 chr11 10109058 10111382 -138672090 + Tigger1 DNA MER2_type 1 2418 0 334 284 45 0 chr11 10111619 10111707 -138671765 + L1ME LINE L1 5666 5757 -364 183 42 0 0 chr11 10111797 10111821 -138671651 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 157 148 17 chr11 10111849 10111964 -138671508 + L1ME4a LINE L1 5989 6118 -3 1883 151 11 0 chr11 10111977 10112262 -138671210 + AluJb SINE Alu 1 288 -24 201 205 0 121 chr11 10112430 10112513 -138670959 - L2 LINE L2 -4 3268 3196 345 333 42 0 chr11 10112600 10112696 -138670776 + L2 LINE L2 3121 3220 -52 855 202 5 31 chr11 10113370 10113563 -138669909 + MER20 DNA MER1_type 32 219 0 2157 128 0 0 chr11 10113845 10114135 -138669337 + AluSx SINE Alu 1 290 -22 1322 201 58 15 chr11 10114172 10114501 -138668971 + MER2 DNA MER2_type 2 344 0 2463 60 7 0 chr11 10115004 10115304 -138668168 + AluY SINE Alu 1 302 -9 771 262 62 9 chr11 10115874 10116084 -138667388 + MIR SINE MIR 4 224 -38 376 349 0 0 chr11 10117620 10117729 -138665743 - MIR SINE MIR -68 140 32 2232 102 3 3 chr11 10118490 10118785 -138664687 - AluSp SINE Alu -18 295 1 274 341 16 0 chr11 10119344 10119470 -138664002 + L3 LINE CR1 735 862 -715 357 256 7 66 chr11 10120817 10120954 -138662518 - MLT1J1 LTR MaLR 0 446 318 688 238 150 35 chr11 10120976 10121262 -138662210 - LTR36 LTR ERV1 0 611 293 338 75 60 0 chr11 10121327 10121394 -138662078 + GA-rich Low_complexity Low_complexity 2 72 0 596 269 56 15 chr11 10121483 10121680 -138661792 - MLT1J2 LTR MaLR -245 205 1 1398 230 104 47 chr11 10121764 10122097 -138661375 + MER21B LTR ERV1 1 370 -493 1539 185 20 30 chr11 10122097 10122399 -138661073 - AluJo SINE Alu -13 299 1 1398 230 104 47 chr11 10122399 10122535 -138660937 + MER21B LTR ERV1 370 497 -366 306 263 0 42 chr11 10122805 10122923 -138660549 + L1MC/D LINE L1 5720 5832 -1976 2216 153 8 99 chr11 10122923 10123037 -138660435 + L1MB2 LINE L1 5375 5498 -685 773 213 7 13 chr11 10123037 10123192 -138660280 + FRAM SINE Alu 1 154 -12 2216 153 8 99 chr11 10123192 10123600 -138659872 + L1MB2 LINE L1 5498 5849 -334 1654 140 12 43 chr11 10123638 10123700 -138659772 + L1MB2 LINE L1 5849 5911 -260 1838 91 0 0 chr11 10123700 10123941 -138659531 + AluY SINE Alu 71 311 0 1654 140 12 43 chr11 10123941 10124206 -138659266 + L1MB2 LINE L1 5911 6166 -5 652 210 57 17 chr11 10124279 10124455 -138659017 + L1M4 LINE L1 4676 4858 -1288 2088 165 21 35 chr11 10124518 10124942 -138658530 - L1MA5 LINE L1 0 6300 5883 855 196 80 9 chr11 10124953 10125178 -138658294 + L1M4 LINE L1 4856 5096 -1050 1258 146 0 101 chr11 10125532 10125585 -138657887 + AluJb SINE Alu 83 140 -172 2357 69 3 0 chr11 10125585 10125874 -138657598 + AluSc SINE Alu 1 290 -19 241 25 0 50 chr11 10125880 10125920 -138657552 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1258 146 0 101 chr11 10125920 10126106 -138657366 + AluJb SINE Alu 145 304 -8 210 259 0 0 chr11 10126239 10126297 -138657175 + (TA)n Simple_repeat Simple_repeat 1 58 0 487 264 136 13 chr11 10227491 10227646 -138555826 - MIR SINE MIR -72 190 17 481 206 112 9 chr11 10227869 10227976 -138555496 + L2 LINE L2 3196 3313 0 4476 200 30 8 chr11 10228278 10229225 -138554247 - L1P LINE L1 -5169 977 11 322 282 111 8 chr11 10229905 10230022 -138553450 + L2 LINE L2 3138 3266 -6 998 305 191 22 chr11 10231349 10231567 -138551905 + L2 LINE L2 2204 2384 -930 8554 53 1 0 chr11 10231567 10232535 -138550937 + LTR5 LTR ERVK 1 969 0 998 305 191 22 chr11 10232535 10232948 -138550524 + L2 LINE L2 2384 2942 -372 23 0 0 0 chr11 10233127 10233150 -138550322 + AT_rich Low_complexity Low_complexity 1 23 0 567 331 50 35 chr11 10233352 10233692 -138549780 - L1ME3 LINE L1 -332 5830 5480 2936 149 13 63 chr11 10233692 10234234 -138549238 + MLT2B2 LTR ERVL 1 515 0 567 331 50 35 chr11 10234234 10234352 -138549120 - L1ME3 LINE L1 -682 5480 5365 359 248 27 67 chr11 10234376 10234525 -138548947 - L1ME4a LINE L1 -190 5931 5789 360 0 0 0 chr11 10234613 10234653 -138548819 + (TG)n Simple_repeat Simple_repeat 2 41 0 1411 158 18 4 chr11 10234654 10234882 -138548590 - AluJo SINE Alu -39 273 43 607 153 0 9 chr11 10234982 10235093 -138548379 + LTR5 LTR ERVK 858 967 -2 405 348 128 19 chr11 10235244 10235722 -138547750 + L2 LINE L2 2638 3183 -130 360 64 0 0 chr11 10235914 10235961 -138547511 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 274 139 125 14 chr11 10237689 10237761 -138545711 + MIR3 SINE MIR 5 84 -124 265 336 66 0 chr11 10239317 10239439 -138544033 - L2 LINE L2 -1 3271 3142 1679 155 8 4 chr11 10239634 10239892 -138543580 - AluJo SINE Alu -27 285 27 7784 42 3 0 chr11 10240854 10241925 -138541547 - L1PA4 LINE L1 -4 6151 5082 26 0 0 0 chr11 10241995 10242021 -138541451 + AT_rich Low_complexity Low_complexity 1 26 0 1031 92 8 0 chr11 10242091 10242222 -138541250 + AluSp SINE Alu 39 170 -143 234 0 0 0 chr11 10242557 10242583 -138540889 + (T)n Simple_repeat Simple_repeat 1 26 0 242 261 38 76 chr11 10242693 10242850 -138540622 - MIR SINE MIR -40 222 72 647 210 59 41 chr11 10242909 10243106 -138540366 + MIR SINE MIR 64 262 0 1840 122 59 0 chr11 10243113 10243383 -138540089 - AluSg SINE Alu -24 286 1 1626 214 40 81 chr11 10243821 10244036 -138539436 + HAL1b LINE L1 794 1016 -332 1787 190 0 0 chr11 10244036 10244336 -138539136 + AluJb SINE Alu 1 300 -12 1626 214 40 81 chr11 10244336 10244699 -138538773 + HAL1b LINE L1 1016 1348 0 21 36 0 0 chr11 10245512 10245540 -138537932 + AT_rich Low_complexity Low_complexity 1 28 0 1755 207 36 66 chr11 10246877 10247132 -138536340 - LTR16C LTR ERVL -2 489 253 2345 104 0 0 chr11 10247132 10247429 -138536043 - AluSx SINE Alu -15 297 1 1755 207 36 66 chr11 10247429 10247642 -138535830 - LTR16C LTR ERVL -238 253 35 1982 146 3 19 chr11 10247771 10248079 -138535393 - AluJb SINE Alu -9 303 1 689 264 31 22 chr11 10248354 10248581 -138534891 + L1M4 LINE L1 4616 4844 -1302 251 118 0 0 chr11 10248612 10248646 -138534826 - U2 snRNA snRNA -154 34 1 244 279 54 58 chr11 10248720 10248996 -138534476 + L1M4 LINE L1 4931 5205 -941 2273 112 0 3 chr11 10249586 10249890 -138533582 + AluSx SINE Alu 1 303 -9 2375 84 3 0 chr11 10250103 10250400 -138533072 + AluSx SINE Alu 1 298 -14 1274 125 22 5 chr11 10250620 10250804 -138532668 + AluSg/x SINE Alu 111 297 -15 1665 169 54 30 chr11 10250810 10251142 -138532330 - THE1C LTR MaLR -35 340 1 306 176 20 0 chr11 10251142 10251190 -138532282 - AluSp SINE Alu -121 182 134 426 137 0 68 chr11 10251198 10251249 -138532223 - MLT1B LTR MaLR -318 72 26 1868 153 85 23 chr11 10251249 10251602 -138531870 + THE1C LTR MaLR 1 375 0 426 137 0 68 chr11 10251602 10251623 -138531849 - MLT1B LTR MaLR -364 26 5 297 75 0 0 chr11 10251679 10251719 -138531753 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2385 226 48 35 chr11 10251865 10252444 -138531028 - MLT1E LTR MaLR -2 591 5 256 353 58 14 chr11 10252848 10252987 -138530485 + L2 LINE L2 3169 3313 0 1875 177 3 0 chr11 10252989 10253289 -138530183 + AluJo SINE Alu 1 301 -11 288 224 15 30 chr11 10253688 10253755 -138529717 - L2 LINE L2 0 3272 3207 1988 167 0 0 chr11 10253874 10254180 -138529292 + AluJb SINE Alu 1 306 -6 288 0 0 0 chr11 10254180 10254212 -138529260 + (TA)n Simple_repeat Simple_repeat 2 33 0 1554 171 0 32 chr11 10254245 10254526 -138528946 - AluJo SINE Alu -40 272 1 958 231 192 34 chr11 10254526 10254937 -138528535 + L3 LINE CR1 636 1111 -466 380 332 82 26 chr11 10256031 10256263 -138527209 - MLT1L LTR MaLR 0 615 371 2570 51 0 0 chr11 10261397 10261693 -138521779 + AluY SINE Alu 1 296 -15 724 164 0 64 chr11 10261765 10261905 -138521567 - FLAM_C SINE Alu 0 133 3 670 254 86 35 chr11 10263259 10263491 -138519981 - MIR SINE MIR -12 250 7 363 96 0 0 chr11 10263894 10263946 -138519526 + (TG)n Simple_repeat Simple_repeat 1 52 0 182 377 0 14 chr11 10264410 10264479 -138518993 + L2 LINE L2 2557 2624 -690 215 236 0 83 chr11 10264485 10264557 -138518915 + L2 LINE L2 3248 3313 0 1781 179 101 31 chr11 10264700 10265058 -138518414 - MLT1B LTR MaLR -3 387 5 326 273 8 83 chr11 10265519 10265640 -138517832 - MER5B DNA MER1_type -66 112 1 433 286 70 36 chr11 10266764 10267065 -138516407 + L1MC5 LINE L1 7451 7761 -200 235 127 32 48 chr11 10267099 10267162 -138516310 + A-rich Low_complexity Low_complexity 4 65 0 370 254 0 25 chr11 10267209 10267327 -138516145 + L1MC5 LINE L1 7806 7920 -41 23 54 0 0 chr11 10267394 10267431 -138516041 + AT_rich Low_complexity Low_complexity 1 37 0 331 315 98 74 chr11 10267709 10267803 -138515669 + L1ME LINE L1 4915 5005 -1141 1577 129 0 0 chr11 10267803 10268020 -138515452 + AluJb SINE Alu 87 303 -9 331 315 98 74 chr11 10268020 10268344 -138515128 + L1ME LINE L1 5005 5343 -803 1746 148 16 0 chr11 10268389 10268645 -138514827 + AluJo SINE Alu 22 281 -31 215 59 0 29 chr11 10268651 10268685 -138514787 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2146 169 5 63 chr11 10268794 10269220 -138514252 + MER57A LTR ERV1 1 401 -2 712 252 191 36 chr11 10269228 10269537 -138513935 + L1MEd LINE L1 3 359 -5760 814 253 77 37 chr11 10269554 10269851 -138513621 + L1MEd LINE L1 515 823 -5296 384 259 79 79 chr11 10269945 10269989 -138513483 + L1ME LINE L1 5477 5520 -601 2326 104 0 3 chr11 10269989 10270288 -138513184 - AluSq SINE Alu -15 298 1 384 259 79 79 chr11 10270288 10270432 -138513040 + L1ME LINE L1 5519 5665 -456 1304 254 105 32 chr11 10270550 10271141 -138512331 + L1MEd LINE L1 966 1599 -4530 780 174 0 42 chr11 10271164 10271308 -138512164 - AluJo SINE Alu -174 138 1 870 236 117 34 chr11 10271325 10271770 -138511702 + L1MEd LINE L1 1647 2128 -4182 900 108 31 8 chr11 10271771 10271901 -138511571 + AluSq/x SINE Alu 1 133 -180 2189 128 0 16 chr11 10271913 10272225 -138511247 + AluSg SINE Alu 1 307 -3 210 37 0 0 chr11 10272228 10272255 -138511217 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3290 221 43 66 chr11 10272255 10272429 -138511043 + L1MEd LINE L1 2104 2280 -3849 1892 155 0 32 chr11 10272429 10272745 -138510727 + AluJb SINE Alu 1 306 -6 3290 221 43 66 chr11 10272745 10273439 -138510033 + L1MEd LINE L1 2280 2988 -3141 2005 129 4 0 chr11 10273439 10273756 -138509716 + AluSx SINE Alu 1 318 0 3290 221 43 66 chr11 10273756 10274483 -138508989 + L1MEd LINE L1 2988 3825 -2304 23 0 0 0 chr11 10274860 10274883 -138508589 + AT_rich Low_complexity Low_complexity 1 23 0 1253 273 44 9 chr11 10274939 10275394 -138508078 - L1MC4a LINE L1 -1788 6020 5550 1985 219 67 39 chr11 10275427 10276145 -138507327 + MER21B LTR ERV1 15 809 -54 270 273 68 23 chr11 10276187 10276319 -138507153 - L1MC4a LINE L1 -2267 5541 5404 * 486 317 128 29 chr11 10276308 10276884 -138506588 - L1MC4a LINE L1 -1825 4321 3669 537 16 0 0 chr11 10276884 10276946 -138506526 + (TG)n Simple_repeat Simple_repeat 1 62 0 486 317 128 29 chr11 10276946 10277026 -138506446 - L1MC4a LINE L1 -2477 3669 3598 704 285 65 5 chr11 10277959 10278173 -138505299 + MIR SINE MIR 29 255 -7 2751 111 3 6 chr11 10278173 10278535 -138504937 + THE1B LTR MaLR 1 361 -3 258 303 91 24 chr11 10278700 10278865 -138504607 + L2 LINE L2 2919 3094 -178 2301 117 0 0 chr11 10279035 10279344 -138504128 - AluSx SINE Alu -3 309 1 816 272 128 13 chr11 10280325 10280638 -138502834 + MLT1I LTR MaLR 7 355 -54 1098 215 173 16 chr11 10280953 10281365 -138502107 + MLT1F LTR MaLR 1 541 -1 1420 120 93 31 chr11 10282068 10282248 -138501224 + L1MA8 LINE L1 5976 6182 -109 9348 108 16 4 chr11 10282248 10283530 -138499942 - HSMAR2 DNA Mariner -4 1298 1 1420 120 93 31 chr11 10283530 10283640 -138499832 + L1MA8 LINE L1 6182 6284 -7 258 221 180 49 chr11 10283784 10283906 -138499566 - MIR SINE MIR -65 197 60 667 124 18 44 chr11 10284292 10284405 -138499067 + L1MB2 LINE L1 6060 6169 -2 260 282 65 0 chr11 10284743 10284866 -138498606 - L1MC4 LINE L1 -1139 6646 6544 246 303 0 22 chr11 10284844 10284933 -138498539 + L1MC4 LINE L1 6617 6703 -1339 * 395 309 99 4 chr11 10286127 10286286 -138497186 - MIR3 SINE MIR -22 186 17 225 0 0 0 chr11 10286661 10286686 -138496786 + (T)n Simple_repeat Simple_repeat 1 25 0 647 210 59 41 chr11 10287012 10287209 -138496263 + MIR SINE MIR 64 262 0 974 149 0 0 chr11 10287216 10287364 -138496108 - AluSg/x SINE Alu -24 288 141 1779 127 16 65 chr11 10287488 10287811 -138495661 + MLT1B LTR MaLR 84 390 0 412 337 45 22 chr11 10288748 10288926 -138494546 - L2 LINE L2 -220 3052 2871 2254 135 32 46 chr11 10289034 10289197 -138494275 - L1MC3 LINE L1 0 7785 7621 1859 183 0 0 chr11 10289197 10289497 -138493975 - AluJb SINE Alu -12 300 1 2254 135 32 46 chr11 10289497 10289771 -138493701 - L1MC3 LINE L1 -164 7621 7354 309 291 41 76 chr11 10289855 10290027 -138493445 + L2 LINE L2 2708 2873 -441 1195 176 0 82 chr11 10290045 10290323 -138493149 - AluJo SINE Alu -4 308 54 846 138 8 0 chr11 10290323 10290446 -138493026 + AluJb SINE Alu 1 124 -188 5590 37 0 0 chr11 10290449 10291462 -138492010 - L1PA4 LINE L1 -410 5745 4733 3331 33 10 0 chr11 10291462 10291850 -138491622 + L1PA4 LINE L1 5756 6150 -5 885 210 34 0 chr11 10291855 10292031 -138491441 + AluJb SINE Alu 131 312 0 385 176 47 3 chr11 10292032 10292113 -138491359 - AluJ/FLAM SINE Alu -240 62 1 529 309 72 8 chr11 10292171 10292436 -138491036 - L2 LINE L2 -776 2538 2257 848 200 19 0 chr11 10292862 10293017 -138490455 - FRAM SINE Alu -13 163 6 1660 177 20 23 chr11 10293063 10293362 -138490110 - AluJb SINE Alu -14 298 1 33449 97 12 14 chr11 10293616 10298415 -138485057 + L1P LINE L1 11 4797 -1349 232 169 0 31 chr11 10298402 10298467 -138485005 + L1MC4 LINE L1 6640 6702 -1340 * 333 207 98 0 chr11 10298476 10298558 -138484914 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chr11 10298558 10298589 -138484883 + (TATG)n Simple_repeat Simple_repeat 1 31 0 878 172 53 13 chr11 10298589 10298719 -138484753 + L1PA6 LINE L1 4794 4917 -1229 360 64 0 0 chr11 10298719 10298766 -138484706 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6719 59 29 5 chr11 10298768 10300093 -138483379 + L1PA6 LINE L1 4799 6145 -9 878 172 53 13 chr11 10300093 10300206 -138483266 + L1PA6 LINE L1 4917 5061 -1085 374 277 63 20 chr11 10300230 10300423 -138483049 + MLT1L LTR MaLR 232 531 -84 1076 169 0 0 chr11 10300440 10300606 -138482866 - AluJ SINE Alu -13 299 134 388 304 8 24 chr11 10300634 10300759 -138482713 + MER5B DNA MER1_type 2 124 -54 774 242 0 0 chr11 10300760 10300909 -138482563 - AluJo SINE Alu -27 285 137 277 239 0 0 chr11 10300909 10300976 -138482496 + MER5B DNA MER1_type 112 178 0 745 248 129 0 chr11 10301917 10302127 -138481345 + MIR SINE MIR 26 262 0 4906 254 41 11 chr11 10302163 10303546 -138479926 + HERVL LTR ERVL 3563 5086 -678 22 35 0 0 chr11 10304139 10304168 -138479304 + AT_rich Low_complexity Low_complexity 1 29 0 433 264 136 13 chr11 10304292 10304447 -138479025 - MIR SINE MIR -72 190 17 441 206 112 9 chr11 10304670 10304777 -138478695 + L2 LINE L2 3196 3313 0 246 105 0 0 chr11 10304927 10304965 -138478507 + (GA)n Simple_repeat Simple_repeat 2 39 0 1521 85 27 0 chr11 10305063 10305286 -138478186 - L1MA8 LINE L1 -7 6284 6056 258 323 19 77 chr11 10306182 10306337 -138477135 + L2 LINE L2 3127 3272 0 24 0 0 0 chr11 10306684 10306708 -138476764 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 125 0 chr11 10306708 10306820 -138476652 - AluJo SINE Alu -185 127 2 1847 176 0 22 chr11 10307198 10307671 -138475801 - AluJb SINE Alu 0 466 1 1953 154 17 0 chr11 10307750 10308042 -138475430 - AluJb SINE Alu -15 297 1 929 251 103 48 chr11 10309527 10309765 -138473707 + MLT1G LTR MaLR 4 262 -333 1698 236 137 42 chr11 10309765 10310307 -138473165 - MLT1E LTR MaLR 0 593 1 929 251 103 48 chr11 10310307 10310359 -138473113 + MLT1G LTR MaLR 262 310 -285 1081 234 5 5 chr11 10310368 10310573 -138472899 + MLT1G LTR MaLR 346 550 -40 206 323 20 20 chr11 10312179 10312278 -138471194 + MIR SINE MIR 43 141 -67 276 211 0 0 chr11 10313025 10313077 -138470395 + L2 LINE L2 3219 3270 -2 562 281 80 28 chr11 10313282 10313570 -138469902 + L1ME4a LINE L1 5600 5905 -216 449 51 0 0 chr11 10313678 10313737 -138469735 + Alu SINE Alu 243 301 -10 1027 288 94 15 chr11 10314715 10315253 -138468219 + L2 LINE L2 2725 3313 0 328 111 0 0 chr11 10315619 10315664 -138467808 - MLT2C1 LTR ERVL -2 518 474 221 180 80 0 chr11 10315722 10315772 -138467700 + GA-rich Low_complexity Low_complexity 2 55 0 1720 171 48 12 chr11 10315772 10316106 -138467366 - MLT2C1 LTR ERVL -48 349 4 1187 280 138 6 chr11 10316418 10317240 -138466232 - L2 LINE L2 -81 3232 2302 2570 111 8 13 chr11 10317647 10318024 -138465448 - THE1C LTR MaLR 0 375 1 182 361 55 6 chr11 10318408 10318591 -138464881 - L2 LINE L2 -499 2815 2624 1008 198 5 40 chr11 10319507 10319709 -138463763 - MER21B LTR ERV1 -373 490 296 203 213 43 0 chr11 10319843 10319890 -138463582 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3136 176 55 105 chr11 10319939 10320864 -138462608 - L1MA10 LINE L1 -99 6235 5357 219 253 165 0 chr11 10321251 10321330 -138462142 + MIR SINE MIR 64 155 -107 553 225 9 0 chr11 10321652 10321763 -138461709 - L2 LINE L2 -2 3311 3200 275 289 10 10 chr11 10322351 10322448 -138461024 + MIR SINE MIR 41 137 -71 991 271 86 21 chr11 10323078 10323461 -138460011 + MLT1K LTR MaLR 181 588 0 1897 172 30 9 chr11 10324109 10324259 -138459213 + MER2 DNA MER2_type 1 146 -199 7221 114 46 35 chr11 10324259 10325476 -138457996 + Tigger3b DNA MER2_type 1 1231 0 1897 172 30 9 chr11 10325476 10325662 -138457810 + MER2 DNA MER2_type 146 344 -1 2347 112 0 0 chr11 10325683 10325988 -138457484 + AluSq SINE Alu 1 305 -8 30 93 0 0 chr11 10327027 10327113 -138456359 + AT_rich Low_complexity Low_complexity 1 86 0 796 100 0 17 chr11 10327245 10327365 -138456107 - L1PB4 LINE L1 -2 6154 6037 1463 192 12 51 chr11 10327823 10328156 -138455316 + L1ME2 LINE L1 5842 6161 -3 1332 198 23 0 chr11 10328887 10329145 -138454327 - MER58B DNA MER1_type 0 341 78 1550 108 0 0 chr11 10329147 10329341 -138454131 - AluSg/x SINE Alu -14 298 105 232 330 34 0 chr11 10329370 10329458 -138454014 - MER58B DNA MER1_type -250 91 1 238 291 27 63 chr11 10330780 10330898 -138452574 - MIR SINE MIR -66 142 37 329 290 97 43 chr11 10331053 10331239 -138452233 + MIR3 SINE MIR 3 198 -10 902 284 81 50 chr11 10331707 10332310 -138451162 - HAL1 LINE L1 -1885 622 1 2211 288 83 38 chr11 10332331 10333248 -138450224 + L2 LINE L2 1853 2727 -586 1096 217 159 0 chr11 10333248 10333506 -138449966 - AluJo SINE Alu -3 299 1 2211 288 83 38 chr11 10333506 10333759 -138449713 + L2 LINE L2 2727 2967 -346 1899 89 58 122 chr11 10333759 10334119 -138449353 - MER1B DNA MER1_type 0 337 1 2211 288 83 38 chr11 10334119 10334343 -138449129 + L2 LINE L2 2967 3313 0 2374 96 0 0 chr11 10335470 10335773 -138447699 - AluSc SINE Alu -6 303 1 1775 100 93 7 chr11 10336493 10336762 -138446710 + AluSx SINE Alu 1 292 -20 1544 186 24 17 chr11 10336851 10337142 -138446330 - AluJo SINE Alu -19 293 1 2147 92 43 0 chr11 10338427 10338709 -138444763 - AluSc SINE Alu -15 294 1 273 254 59 67 chr11 10338978 10339287 -138444185 - Charlie1 DNA MER1_type -1027 1734 1378 31565 105 25 55 chr11 10340720 10347043 -138436429 - L1PA7 LINE L1 -14 6140 12 267 281 45 0 chr11 10347056 10347145 -138436327 + MER112 DNA MER1_type 164 256 -4 499 207 121 35 chr11 10347636 10347810 -138435662 - ORSL DNA AcHobo -76 199 11 693 283 105 41 chr11 10348039 10348428 -138435044 - MLT1K LTR MaLR -10 578 165 192 194 129 16 chr11 10348696 10348758 -138434714 - MIR SINE MIR -69 193 125 180 308 0 0 chr11 10348767 10348819 -138434653 - MIR SINE MIR -15 247 196 237 268 7 80 chr11 10348846 10348984 -138434488 - LTR67 LTR ERVL -4 553 426 282 184 0 0 chr11 10349111 10349160 -138434312 - MLT1K LTR MaLR -339 249 201 1549 238 118 9 chr11 10349307 10349749 -138433723 - LTR33 LTR ERVL -31 490 1 466 314 7 7 chr11 10349760 10349900 -138433572 - MIR SINE MIR -118 144 5 778 280 71 4 chr11 10350496 10350735 -138432737 - MIR SINE MIR 0 262 8 396 194 71 51 chr11 10351087 10351185 -138432287 + MLT1J2 LTR MaLR 307 406 -44 3627 119 22 8 chr11 10351209 10351795 -138431677 - L1MA3 LINE L1 -2 6303 5710 8014 215 36 28 chr11 10352139 10354313 -138429159 + L1M4 LINE L1 2183 4374 -1772 7129 193 23 20 chr11 10354521 10356971 -138426501 + L1MB7 LINE L1 3709 6165 -19 1856 174 3 7 chr11 10357160 10357459 -138426013 + AluJb SINE Alu 15 312 0 2628 118 3 3 chr11 10358037 10358401 -138425071 - THE1B LTR MaLR 0 364 1 1210 228 55 78 chr11 10358676 10359317 -138424155 - L1M4 LINE L1 -2447 3699 3074 830 147 0 23 chr11 10359363 10359492 -138423980 - FLAM_C SINE Alu -17 126 1 325 195 0 122 chr11 10359493 10359535 -138423937 - L1M4 LINE L1 -3059 3087 3041 2227 113 3 0 chr11 10359535 10359837 -138423635 - AluSq SINE Alu -10 303 1 325 195 0 122 chr11 10359837 10359917 -138423555 - L1M4 LINE L1 -3105 3041 2980 254 257 119 0 chr11 10360736 10360837 -138422635 - L1ME4a LINE L1 -195 5926 5814 517 279 40 35 chr11 10361804 10362005 -138421467 + LTR33 LTR ERVL 320 521 0 298 265 111 8 chr11 10363045 10363162 -138420310 + L2 LINE L2 3138 3266 -6 243 295 0 0 chr11 10363797 10363858 -138419614 + MLT1J LTR MaLR 229 289 -222 2810 3 0 16 chr11 10363867 10364176 -138419296 - AluYb8 SINE Alu -14 304 1 430 214 152 45 chr11 10364240 10364418 -138419054 + MLT1J LTR MaLR 304 500 -11 481 202 40 8 chr11 10365062 10365186 -138418286 - L1MB4 LINE L1 0 6180 6053 23 33 0 0 chr11 10365192 10365222 -138418250 + AT_rich Low_complexity Low_complexity 1 30 0 521 98 24 0 chr11 10365222 10365304 -138418168 - L1PA16 LINE L1 -4 6162 6079 204 206 48 16 chr11 10367404 10367467 -138416005 + G-rich Low_complexity Low_complexity 3 67 0 2597 236 143 39 chr11 10367547 10368277 -138415195 + Charlie7 DNA MER1_type 32 931 -1681 2337 89 0 16 chr11 10368277 10368581 -138414891 + AluSx SINE Alu 1 299 -13 2597 236 143 39 chr11 10368581 10369018 -138414454 + Charlie7 DNA MER1_type 931 1321 -1291 677 296 126 22 chr11 10369096 10369454 -138414018 - Charlie7 DNA MER1_type -2217 395 1 2363 227 115 50 chr11 10369649 10369986 -138413486 + Charlie7 DNA MER1_type 1345 1659 -953 414 57 0 0 chr11 10369986 10370039 -138413433 + (CA)n Simple_repeat Simple_repeat 2 54 0 2363 227 115 50 chr11 10370039 10370818 -138412654 + Charlie7 DNA MER1_type 1659 2533 -79 207 291 97 63 chr11 10370975 10371563 -138411909 - L2 LINE L2 -828 2486 1879 432 0 0 0 chr11 10371608 10371656 -138411816 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 0 0 0 chr11 10371710 10371746 -138411726 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr11 10372250 10372305 -138411167 + GC_rich Low_complexity Low_complexity 1 55 0 197 211 35 0 chr11 10373959 10374016 -138409456 + L2 LINE L2 3255 3313 0 712 279 68 13 chr11 10374107 10374312 -138409160 - MIR SINE MIR -10 252 31 2334 104 0 3 chr11 10374312 10374621 -138408851 - AluSx SINE Alu -4 308 1 712 279 68 13 chr11 10374621 10374652 -138408820 - MIR SINE MIR -231 31 3 336 248 178 0 chr11 10374722 10374823 -138408649 - L2 LINE L2 0 3313 3195 2192 118 3 19 chr11 10374943 10375257 -138408215 - AluSc SINE Alu 0 309 1 578 156 91 65 chr11 10375819 10375973 -138407499 + MER103 DNA DNA 1 158 -8 1761 175 13 13 chr11 10378340 10378648 -138404824 - AluJb SINE Alu -4 308 1 1881 140 18 0 chr11 10378989 10379261 -138404211 + AluJb SINE Alu 6 282 -30 390 235 0 12 chr11 10379522 10379607 -138403865 - FLAM_A SINE Alu -27 106 23 312 178 0 96 chr11 10379595 10379668 -138403804 + AluJb SINE Alu 88 153 -149 * 372 224 84 19 chr11 10380755 10380862 -138402610 - MIR3 SINE MIR -6 202 89 191 250 17 0 chr11 10381145 10381205 -138402267 + MIR SINE MIR 2 62 -200 372 233 60 21 chr11 10381208 10381354 -138402118 + MIR SINE MIR 12 160 -63 363 81 70 0 chr11 10381384 10381470 -138402002 + (TA)n Simple_repeat Simple_repeat 1 92 0 1880 161 0 17 chr11 10381470 10381769 -138401703 - AluJb SINE Alu -18 294 1 2187 124 0 7 chr11 10381780 10382079 -138401393 - AluSx SINE Alu -15 297 1 247 196 0 0 chr11 10382114 10382165 -138401307 + GA-rich Low_complexity Low_complexity 2 52 0 537 278 124 51 chr11 10383458 10383590 -138399882 - L2 LINE L2 -30 3283 3162 1132 236 167 5 chr11 10383590 10384039 -138399433 - LTR33A LTR ERVL 0 523 2 537 278 124 51 chr11 10384039 10384405 -138399067 - L2 LINE L2 -151 3162 2749 608 213 46 51 chr11 10385355 10385552 -138397920 + MIR SINE MIR 64 259 -3 627 328 25 4 chr11 10385599 10385834 -138397638 - MIR SINE MIR -17 245 6 646 281 74 0 chr11 10386307 10386510 -138396962 + MIR SINE MIR 9 226 -36 29446 94 17 50 chr11 10386795 10387350 -138396122 + L1PA7 LINE L1 12 584 -5570 2302 101 3 0 chr11 10387350 10387648 -138395824 + AluSq SINE Alu 1 299 -14 29446 94 17 50 chr11 10387648 10391128 -138392344 + L1PA7 LINE L1 584 3676 -2478 2817 3 0 3 chr11 10391128 10391428 -138392044 + AluYa5 SINE Alu 1 299 -12 29446 94 17 50 chr11 10391428 10393826 -138389646 + L1PA7 LINE L1 3676 6154 0 1889 146 0 0 chr11 10394092 10394386 -138389086 + AluSx SINE Alu 1 294 -18 1639 164 0 0 chr11 10394396 10394665 -138388807 + AluSx SINE Alu 39 307 -5 197 284 62 119 chr11 10395425 10395601 -138387871 + L2 LINE L2 3057 3222 -50 190 313 24 12 chr11 10396237 10396320 -138387152 + L3 LINE CR1 1305 1388 -189 2345 141 58 22 chr11 10396373 10396785 -138386687 - MSTA LTR MaLR 0 428 2 2210 229 86 11 chr11 10396909 10397482 -138385990 + MLT1E2 LTR MaLR 11 626 0 233 168 0 178 chr11 10398140 10398247 -138385225 - L2 LINE L2 -588 2726 2639 613 291 171 0 chr11 10398403 10398613 -138384859 - MIR SINE MIR -15 247 2 732 261 52 36 chr11 10401644 10401950 -138381522 - L1MC4a LINE L1 -1763 6045 5735 325 229 219 0 chr11 10403096 10403192 -138380280 + MIR SINE MIR 28 144 -118 3140 161 51 4 chr11 10403566 10404100 -138379372 - MER68 LTR ERV1 0 562 4 1854 137 3 44 chr11 10404565 10404880 -138378592 - AluJb SINE Alu -10 302 1 764 252 56 39 chr11 10404980 10405214 -138378258 + MIR SINE MIR 20 257 -5 264 283 164 45 chr11 10406076 10406253 -138377219 - MIR SINE MIR 0 262 65 674 237 97 43 chr11 10406539 10406818 -138376654 - L2 LINE L2 -1 3312 3019 1706 155 14 7 chr11 10407309 10407599 -138375873 - AluSx SINE Alu -20 292 1 287 259 98 27 chr11 10408179 10408291 -138375181 + L3 LINE CR1 1450 1569 -8 899 76 18 1 chr11 10409784 10409917 -138373555 - L1PA10 LINE L1 -196 5972 5855 897 80 0 43 chr11 10409917 10410052 -138373420 + L1PA11 LINE L1 6043 6174 0 2098 122 0 0 chr11 10411740 10412035 -138371437 - AluSq SINE Alu -18 295 1 287 264 36 2 chr11 10412394 10412514 -138370958 + MER117 DNA MER1_type 2 159 -38 1579 316 60 17 chr11 10413501 10414153 -138369319 - L2 LINE L2 -588 2726 2047 317 289 148 0 chr11 10414639 10414767 -138368705 - L2 LINE L2 -1 3312 3166 196 295 156 49 chr11 10414925 10415335 -138368137 - L2 LINE L2 -337 2977 2524 316 313 84 8 chr11 10415783 10415916 -138367556 + MIR SINE MIR 19 160 -65 3500 158 16 6 chr11 10415949 10416570 -138366902 + L1MB4 LINE L1 5554 6180 0 2212 97 0 3 chr11 10417971 10418269 -138365203 - AluSg1 SINE Alu -12 297 1 1960 115 33 13 chr11 10419593 10419897 -138363575 - AluSg SINE Alu 0 310 1 378 254 52 37 chr11 10419908 10420042 -138363430 + MIR SINE MIR 90 225 -37 206 274 32 0 chr11 10420653 10420715 -138362757 + (CATG)n Simple_repeat Simple_repeat 1 64 0 313 297 55 0 chr11 10421054 10421145 -138362327 - L2 LINE L2 -5 3308 3213 413 340 53 5 chr11 10421368 10421556 -138361916 + MIR3 SINE MIR 1 197 -11 436 325 143 51 chr11 10422097 10422525 -138360947 - L1ME4a LINE L1 0 6121 5655 218 283 0 0 chr11 10423021 10423067 -138360405 + polypyrimidine Low_complexity Low_complexity 4 49 0 386 239 107 50 chr11 10423518 10423677 -138359795 + MIR SINE MIR 65 232 -30 1292 190 145 21 chr11 10423870 10424243 -138359229 - Charlie1 DNA MER1_type 0 2761 2343 253 310 17 0 chr11 10424243 10424301 -138359171 - Charlie1 DNA MER1_type -2702 59 1 488 16 16 0 chr11 10424498 10424559 -138358913 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 244 250 29 0 chr11 10425086 10425154 -138358318 - L2 LINE L2 -30 3242 3173 865 235 171 7 chr11 10425201 10425482 -138357990 + L2 LINE L2 2986 3312 -1 257 227 182 11 chr11 10426852 10426940 -138356532 + MIR3 SINE MIR 99 201 -7 232 229 62 0 chr11 10427077 10427125 -138356347 + MIR3 SINE MIR 152 202 -6 * 262 328 117 8 chr11 10427123 10427251 -138356221 - MIR3 SINE MIR -51 157 16 189 0 0 0 chr11 10427278 10427299 -138356173 + (TG)n Simple_repeat Simple_repeat 2 22 0 272 235 0 0 chr11 10427460 10427511 -138355961 + L2 LINE L2 3263 3313 0 2250 129 6 24 chr11 10431529 10431870 -138351602 + MER1B DNA MER1_type 2 336 -1 224 217 0 22 chr11 10433016 10433062 -138350410 - L3b LINE CR1 -10 1573 1529 30 0 0 0 chr11 10433134 10433164 -138350308 + AT_rich Low_complexity Low_complexity 1 30 0 183 288 75 12 chr11 10433417 10433497 -138349975 - MIR SINE MIR -118 144 60 2027 113 14 0 chr11 10434060 10434352 -138349120 - AluSx SINE Alu -10 302 7 348 207 83 33 chr11 10435503 10435624 -138347848 - HAL1 LINE L1 0 2507 2381 475 261 78 22 chr11 10435713 10435905 -138347567 - L1MC4a LINE L1 -325 5796 5682 4954 233 65 27 chr11 10436622 10438161 -138345311 + L1ME4a LINE L1 37 1634 -4762 1215 204 83 6 chr11 10438175 10438513 -138344959 + L1ME4a LINE L1 4302 4665 -1550 * 1722 220 28 8 chr11 10438508 10438908 -138344564 + L1ME4a LINE L1 5595 6002 -231 275 232 29 0 chr11 10438913 10438990 -138344482 + L1MA10 LINE L1 6074 6148 -14 219 292 31 0 chr11 10439016 10439081 -138344391 + MIR3 SINE MIR 133 199 -9 2555 129 5 15 chr11 10439876 10440258 -138343214 - Tigger3b DNA MER2_type -14 1217 840 1367 97 88 23 chr11 10440258 10440474 -138342998 + MER30 DNA MER1_type 1 230 0 * 4720 102 80 26 chr11 10440474 10441276 -138342196 - Tigger3b DNA MER2_type -384 847 3 192 229 82 49 chr11 10441396 10441457 -138342015 - L2 LINE L2 -51 3221 3159 375 231 0 22 chr11 10441763 10441854 -138341618 + L1ME4a LINE L1 6101 6189 -1 216 318 15 0 chr11 10442389 10442455 -138341017 - L2 LINE L2 -653 2661 2595 716 293 104 41 chr11 10442780 10443118 -138340354 + L3 LINE CR1 988 1346 -231 654 242 108 36 chr11 10443125 10443348 -138340124 - MIR SINE MIR 0 262 24 236 356 0 11 chr11 10443397 10443484 -138339988 + L3 LINE CR1 1371 1456 -121 390 266 85 0 chr11 10443538 10443632 -138339840 + MER5A DNA MER1_type 10 111 -78 457 302 117 9 chr11 10443664 10443886 -138339586 + MIR SINE MIR 6 251 -11 2218 53 49 11 chr11 10444411 10444696 -138338776 + AluY SINE Alu 1 296 -15 2312 94 3 0 chr11 10446521 10446819 -138336653 + AluY SINE Alu 1 299 -12 1581 240 94 72 chr11 10447135 10448011 -138335461 - L2 LINE L2 -4 3309 2419 455 236 43 36 chr11 10448774 10448914 -138334558 - L2 LINE L2 -5 3308 3168 578 276 105 0 chr11 10449070 10449298 -138334174 + MLT1L LTR MaLR 1 252 -363 232 325 8 32 chr11 10449284 10449410 -138334062 + MLT1L LTR MaLR 466 588 -27 * 215 408 33 0 chr11 10449611 10449731 -138333741 - L2 LINE L2 -560 2754 2631 184 224 271 35 chr11 10449771 10449856 -138333616 + L2 LINE L2 3163 3267 -5 23 54 0 0 chr11 10450792 10450829 -138332643 + AT_rich Low_complexity Low_complexity 1 37 0 2384 78 3 0 chr11 10451115 10451408 -138332064 + AluSg SINE Alu 1 294 -16 378 0 0 0 chr11 10452516 10452558 -138330914 + (CA)n Simple_repeat Simple_repeat 2 43 0 230 298 0 0 chr11 10452994 10453051 -138330421 + L2 LINE L2 3208 3264 -8 240 35 0 0 chr11 10454497 10454526 -138328946 + (CA)n Simple_repeat Simple_repeat 2 30 0 597 318 80 29 chr11 10454580 10454819 -138328653 - MIR SINE MIR -10 252 2 26 0 0 0 chr11 10454889 10454915 -138328557 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 10455235 10455257 -138328215 + AT_rich Low_complexity Low_complexity 1 22 0 187 330 171 0 chr11 10455518 10455606 -138327866 + L3 LINE CR1 505 607 -970 481 312 42 89 chr11 10455979 10456383 -138327089 - L2 LINE L2 -37 3235 2851 347 293 249 9 chr11 10456406 10456635 -138326837 + L3 LINE CR1 636 919 -658 748 126 21 98 chr11 10456637 10456780 -138326692 - FLAM_C SINE Alu -10 133 2 630 310 191 40 chr11 10456798 10457327 -138326145 + L3 LINE CR1 934 1542 -35 2390 220 21 14 chr11 10457531 10458044 -138325428 - MER34 LTR ERV1 0 542 26 224 204 0 23 chr11 10458627 10458671 -138324801 + L2 LINE L2 3227 3269 -3 215 289 0 0 chr11 10461800 10461838 -138321634 - L2 LINE L2 -25 3247 3210 228 312 87 33 chr11 10461857 10461949 -138321523 - MIR SINE MIR -102 106 12 830 286 57 0 chr11 10462039 10462284 -138321188 - MIR SINE MIR -2 260 2 206 369 10 19 chr11 10462297 10462400 -138321072 + L2 LINE L2 3198 3299 -14 4708 201 43 43 chr11 10462541 10462900 -138320572 + L1ME1 LINE L1 4106 4464 -1702 2656 130 70 2 chr11 10462900 10463314 -138320158 + L1PA16 LINE L1 5718 6159 -7 4708 201 43 43 chr11 10463314 10463814 -138319658 + L1ME1 LINE L1 4464 4963 -1203 8982 170 117 11 chr11 10463814 10465401 -138318071 - MER52A LTR ERV1 0 1755 1 4708 201 43 43 chr11 10465401 10466606 -138316866 + L1ME1 LINE L1 4963 6161 -5 25 51 0 0 chr11 10466780 10466819 -138316653 + AT_rich Low_complexity Low_complexity 1 39 0 2221 96 0 10 chr11 10467286 10467606 -138315866 - AluSc SINE Alu 0 309 1 604 303 23 27 chr11 10467752 10467947 -138315525 - MIR3 SINE MIR -11 197 2 2561 60 0 0 chr11 10470061 10470361 -138313111 - AluY SINE Alu -11 300 1 1442 247 72 49 chr11 10471151 10471708 -138311764 + MLT1F1 LTR MaLR 1 567 0 1467 189 4 19 chr11 10472113 10472373 -138311099 - LTR26B LTR ERV1 0 531 276 3061 147 157 136 chr11 10472375 10472760 -138310712 + L1MC3 LINE L1 6740 7115 -670 229 323 21 10 chr11 10472760 10472856 -138310616 + MLT1F1 LTR MaLR 35 131 -436 3061 147 157 136 chr11 10472856 10473399 -138310073 + L1MC3 LINE L1 7115 7785 0 859 214 80 5 chr11 10473835 10474036 -138309436 + MIR SINE MIR 23 238 -24 365 310 239 6 chr11 10474360 10474695 -138308777 + L3 LINE CR1 1052 1464 -113 2153 116 0 0 chr11 10474703 10474988 -138308484 + AluSx SINE Alu 3 287 -25 364 204 65 21 chr11 10475005 10475098 -138308374 - MER5A DNA MER1_type -55 134 38 222 174 0 0 chr11 10475409 10475455 -138308017 + (TG)n Simple_repeat Simple_repeat 1 46 0 317 306 46 10 chr11 10477063 10477259 -138306213 - L1ME LINE L1 -383 5738 5536 21 0 0 0 chr11 10477355 10477376 -138306096 + AT_rich Low_complexity Low_complexity 1 21 0 424 302 0 0 chr11 10477464 10477580 -138305892 + MIR SINE MIR 75 190 -72 597 296 136 51 chr11 10478223 10478863 -138304609 + L2 LINE L2 2579 3271 -1 444 311 119 49 chr11 10479012 10479619 -138303853 - L2 LINE L2 -314 2999 2336 247 329 47 12 chr11 10479650 10479735 -138303737 + MIR SINE MIR 45 132 -76 340 220 159 15 chr11 10479765 10479897 -138303575 + HAL1b LINE L1 987 1137 -211 191 324 29 0 chr11 10480054 10480122 -138303350 - L2 LINE L2 -999 2315 2246 248 189 27 14 chr11 10480399 10480473 -138302999 - HAL1b LINE L1 0 1348 1274 308 228 234 18 chr11 10480532 10480699 -138302773 - HAL1b LINE L1 -211 1137 935 201 158 0 0 chr11 10480710 10480748 -138302724 + T-rich Low_complexity Low_complexity 1 38 0 251 238 42 83 chr11 10480770 10480938 -138302534 - L1ME4a LINE L1 -12 6109 5949 1984 89 48 10 chr11 10480950 10481241 -138302231 - AluY SINE Alu -9 302 1 404 330 22 60 chr11 10481513 10481695 -138301777 + MIR3 SINE MIR 5 179 -29 305 272 133 63 chr11 10482113 10482216 -138301256 + MIR SINE MIR 3 122 -140 2598 56 13 0 chr11 10482216 10482522 -138300950 - AluY SINE Alu -1 310 1 305 272 133 63 chr11 10482522 10482576 -138300896 + MIR SINE MIR 122 171 -91 1466 183 103 3 chr11 10482576 10482876 -138300596 - MER2 DNA MER2_type -15 330 1 674 286 34 49 chr11 10484217 10484470 -138299002 + MIR SINE MIR 2 249 -13 758 165 8 16 chr11 10484936 10485063 -138298409 - FLAM_A SINE Alu -5 137 12 876 185 14 28 chr11 10485086 10485302 -138298170 - AluSp SINE Alu -12 301 89 1251 84 60 0 chr11 10485404 10485571 -138297901 - L1PA7 LINE L1 -14 6140 5964 21 0 0 0 chr11 10485606 10485627 -138297845 + AT_rich Low_complexity Low_complexity 1 21 0 480 194 0 11 chr11 10485631 10485724 -138297748 + MIR SINE MIR 63 154 -108 202 188 0 0 chr11 10485956 10485988 -138297484 + polypyrimidine Low_complexity Low_complexity 5 36 0 574 322 180 7 chr11 10485988 10486542 -138296930 - L2 LINE L2 -8 3264 2613 229 217 0 0 chr11 10487015 10487061 -138296411 - MIR3 SINE MIR -3 205 160 286 273 0 0 chr11 10489113 10489168 -138294304 - L2 LINE L2 -8 3264 3210 758 301 38 15 chr11 10489904 10490166 -138293306 + Charlie8 DNA MER1_type 18 285 -2132 276 203 14 14 chr11 10490225 10490294 -138293178 + Charlie8 DNA MER1_type 2340 2408 -9 486 0 0 0 chr11 10490618 10490672 -138292800 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 447 246 96 62 chr11 10490684 10490907 -138292565 - MIR SINE MIR -13 249 19 196 307 221 6 chr11 10491146 10491309 -138292163 - MIR3 SINE MIR -3 205 8 1095 46 0 0 chr11 10491908 10492038 -138291434 - L1PA5 LINE L1 -429 5726 5597 3699 46 5 0 chr11 10492038 10492467 -138291005 + L1PA5 LINE L1 5719 6151 -3 5033 125 67 57 chr11 10492512 10493296 -138290176 - MER21A LTR ERV1 0 931 135 2256 113 0 3 chr11 10493296 10493597 -138289875 + AluSx SINE Alu 1 300 -12 5033 125 67 57 chr11 10493597 10493718 -138289754 - MER21A LTR ERV1 -796 135 17 1354 142 8 25 chr11 10493870 10494110 -138289362 - AluSp SINE Alu -77 236 1 2188 124 0 0 chr11 10494111 10494410 -138289062 - AluSx SINE Alu -13 299 1 239 240 128 8 chr11 10494768 10494893 -138288579 + MIR SINE MIR 120 259 -3 249 355 0 11 chr11 10495045 10495138 -138288334 + MIR SINE MIR 19 110 -152 502 275 116 9 chr11 10495233 10495466 -138288006 + MARNA DNA Mariner 261 518 -68 801 169 0 0 chr11 10496020 10496144 -138287328 + FLAM_C SINE Alu 3 126 -17 1980 190 87 3 chr11 10498035 10498414 -138285058 - MLT1E2 LTR MaLR 0 626 216 469 136 57 23 chr11 10498438 10498526 -138284946 - AluJb SINE Alu -24 288 198 2553 59 7 0 chr11 10498538 10498841 -138284631 - AluY SINE Alu -5 306 2 486 169 124 90 chr11 10498842 10499019 -138284453 - MLT1E2 LTR MaLR -348 157 1 3238 127 91 2 chr11 10499251 10499842 -138283630 - L1MA5A LINE L1 0 6297 5654 404 291 40 29 chr11 10500490 10500754 -138282718 - MLT1J2 LTR MaLR 0 450 155 215 344 117 23 chr11 10502347 10502475 -138280997 - L2 LINE L2 -16 3256 3117 678 244 27 45 chr11 10502803 10503024 -138280448 + MIR SINE MIR 21 237 -25 249 296 112 65 chr11 10504678 10504847 -138278625 + MER5B DNA MER1_type 1 177 -1 325 324 14 14 chr11 10505259 10505404 -138278068 + CT-rich Low_complexity Low_complexity 2 146 0 201 306 16 0 chr11 10508993 10509055 -138274417 + L2 LINE L2 3209 3271 -1 382 319 84 51 chr11 10510370 10510676 -138272796 - L2 LINE L2 -14 3299 2974 2226 99 14 0 chr11 10510676 10510960 -138272512 + AluSx SINE Alu 1 288 -24 382 319 84 51 chr11 10510960 10511067 -138272405 - L2 LINE L2 -339 2974 2872 * 1224 301 163 18 chr11 10511061 10512097 -138271375 - L2 LINE L2 -951 2363 1178 342 0 0 0 chr11 10512551 10512589 -138270883 + (TA)n Simple_repeat Simple_repeat 2 39 0 372 274 210 14 chr11 10512675 10512894 -138270578 + MIR SINE MIR 1 262 0 195 327 0 0 chr11 10513552 10513604 -138269868 - MIR SINE MIR -171 91 40 292 258 113 0 chr11 10513656 10513753 -138269719 - MIR SINE MIR -63 145 38 186 277 0 0 chr11 10514213 10514260 -138269212 + L2 LINE L2 3006 3052 -220 2372 103 0 0 chr11 10514305 10514606 -138268866 - AluSx SINE Alu -11 301 1 780 227 22 16 chr11 10515770 10515955 -138267517 + MIR SINE MIR 64 249 -13 1872 140 7 26 chr11 10516230 10516537 -138266935 - AluJb SINE Alu -11 301 1 216 365 24 0 chr11 10516655 10516740 -138266732 + L2 LINE L2 3088 3174 -98 189 0 0 0 chr11 10517309 10517330 -138266142 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 980 88 8 0 chr11 10517330 10517455 -138266017 - AluSg1 SINE Alu -183 126 1 692 249 116 37 chr11 10518666 10519020 -138264452 + MLT1L LTR MaLR 6 387 -228 390 194 187 52 chr11 10520036 10520191 -138263281 - MER5B DNA MER1_type -1 177 2 360 302 99 39 chr11 10520600 10520832 -138262640 - L1ME4a LINE L1 -2 6119 5874 342 271 52 0 chr11 10520869 10520965 -138262507 - L1ME4a LINE L1 -324 5797 5697 2018 146 7 0 chr11 10523008 10523302 -138260170 - AluSx SINE Alu -16 296 1 3037 128 15 2 chr11 10523776 10524253 -138259219 - L1PA13 LINE L1 -3 6160 5678 1373 283 59 50 chr11 10524257 10524869 -138258603 - L1MEd LINE L1 -4653 1657 1052 856 255 60 82 chr11 10524869 10525284 -138258188 - MLT1I LTR MaLR -3 406 1 1373 283 59 50 chr11 10525284 10525409 -138258063 - L1MEd LINE L1 -5258 1052 930 1567 150 6 104 chr11 10525409 10525735 -138257737 - AluJo SINE Alu -18 294 1 1373 283 59 50 chr11 10525735 10525995 -138257477 - L1MEd LINE L1 -5380 930 578 873 304 88 23 chr11 10526073 10526504 -138256968 - L1MEd LINE L1 -5655 464 6 252 275 110 0 chr11 10526517 10526626 -138256846 + L1P LINE L1 5269 5389 -762 338 288 108 36 chr11 10526630 10526880 -138256592 + L1ME LINE L1 5411 5678 -443 239 317 117 0 chr11 10527287 10527407 -138256065 + L2 LINE L2 3139 3272 0 332 282 71 18 chr11 10527856 10528026 -138255446 + L2 LINE L2 2580 2758 -556 281 325 41 35 chr11 10528144 10528313 -138255159 + L2 LINE L2 2921 3090 -182 343 326 39 48 chr11 10528423 10528653 -138254819 + L2 LINE L2 2575 2802 -512 252 321 19 28 chr11 10529555 10529661 -138253811 + MER94 DNA DNA 17 121 -13 325 308 14 14 chr11 10530426 10530569 -138252903 - MIR SINE MIR -85 177 35 497 236 61 14 chr11 10530856 10531004 -138252468 + MER103 DNA DNA 10 164 -2 1874 146 43 15 chr11 10531389 10531717 -138251755 - MER1B DNA MER1_type 0 337 1 1530 194 36 47 chr11 10531719 10532079 -138251393 + MLT1A1 LTR MaLR 10 365 0 624 282 107 0 chr11 10533531 10533747 -138249725 - MIR SINE MIR -15 247 9 948 173 6 45 chr11 10535123 10535302 -138248170 - AluJb SINE Alu -138 174 3 2052 166 80 13 chr11 10535480 10535957 -138247515 - L1M4 LINE L1 -751 5395 4887 638 174 0 35 chr11 10536169 10536284 -138247188 + AluJo SINE Alu 37 147 -165 217 238 95 0 chr11 10536284 10536347 -138247125 - MIR3 SINE MIR -130 78 10 377 303 62 28 chr11 10536800 10537016 -138246456 - MIR SINE MIR -18 244 16 314 293 185 48 chr11 10537309 10537827 -138245645 - L3 LINE CR1 -235 1342 754 329 319 28 7 chr11 10538013 10538157 -138245315 + L3 LINE CR1 1422 1568 -9 1226 282 142 29 chr11 10539901 10540650 -138242822 + HAL1b LINE L1 66 898 -450 2006 234 45 19 chr11 10540664 10541198 -138242274 + MER74B LTR ERVL 65 612 -10 2421 93 6 3 chr11 10541244 10541587 -138241885 + L1P LINE L1 4571 4914 -1232 184 133 0 0 chr11 10541689 10541719 -138241753 + MIR SINE MIR 112 141 -67 1789 164 27 3 chr11 10541846 10542175 -138241297 + L1MB3 LINE L1 5845 6181 -2 1715 137 22 30 chr11 10542550 10542821 -138240651 - AluJb SINE Alu -22 290 22 275 219 16 0 chr11 10542856 10542920 -138240552 - L2 LINE L2 0 3313 3249 234 0 0 0 chr11 10542920 10542946 -138240526 + (CA)n Simple_repeat Simple_repeat 2 27 0 506 291 112 6 chr11 10542975 10543154 -138240318 - MIR SINE MIR -1 261 64 314 223 165 39 chr11 10548248 10548351 -138235121 - MIR SINE MIR -126 136 21 1052 71 0 0 chr11 10550412 10550539 -138232933 - AluSg/x SINE Alu -8 304 178 1153 226 167 15 chr11 10550904 10551306 -138232166 + MLT1K LTR MaLR 126 588 0 336 300 80 89 chr11 10551370 10551607 -138231865 + L2 LINE L2 2945 3179 -93 2313 118 7 0 chr11 10552180 10552530 -138230942 - AluSx SINE Alu 0 352 1 718 165 83 0 chr11 10552605 10552738 -138230734 + MER5A DNA MER1_type 46 189 0 231 197 105 0 chr11 10552740 10552816 -138230656 + LTR37B LTR ERV1 115 198 -270 * 776 256 47 24 chr11 10552790 10553107 -138230365 + LTR37B LTR ERV1 88 452 -16 2659 51 0 3 chr11 10553107 10553419 -138230053 - AluY SINE Alu 0 311 1 776 256 47 24 chr11 10553419 10553433 -138230039 + LTR37B LTR ERV1 452 464 -4 2782 105 50 121 chr11 10554256 10554798 -138228674 - L1MA9 LINE L1 -5 6307 5817 297 0 0 0 chr11 10554798 10554831 -138228641 + (TG)n Simple_repeat Simple_repeat 2 34 0 2782 105 50 121 chr11 10554831 10554935 -138228537 - L1MA9 LINE L1 -495 5817 5707 379 206 235 42 chr11 10556053 10556203 -138227269 + MIR SINE MIR 16 188 -74 24 0 0 0 chr11 10556237 10556261 -138227211 + AT_rich Low_complexity Low_complexity 1 24 0 1415 183 12 20 chr11 10556269 10556521 -138226951 - AluJo SINE Alu -62 250 1 338 282 91 92 chr11 10556604 10557109 -138226363 - L2 LINE L2 -6 3266 2741 404 301 120 0 chr11 10558178 10558361 -138225111 + Charlie8 DNA MER1_type 1 205 -2212 2240 124 7 0 chr11 10558957 10559264 -138224208 - AluSx SINE Alu -3 309 1 351 266 13 0 chr11 10559968 10560047 -138223425 - L2 LINE L2 -1 3271 3192 563 234 174 12 chr11 10560809 10560976 -138222496 + MIR SINE MIR 7 200 -62 387 167 65 37 chr11 10560982 10561090 -138222382 - MER53 DNA DNA 0 189 79 564 194 97 0 chr11 10561105 10561208 -138222264 - FLAM_A SINE Alu -29 113 1 183 311 256 0 chr11 10561853 10561943 -138221529 - MIR SINE MIR -107 155 43 271 252 63 54 chr11 10562644 10562755 -138220717 + MIR SINE MIR 81 192 -70 2478 47 3 44 chr11 10562927 10563244 -138220228 + AluY SINE Alu 1 304 -7 195 146 0 0 chr11 10563757 10563798 -138219674 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 199 313 54 54 chr11 10563798 10563910 -138219562 - L2 LINE L2 -24 3248 3137 421 273 41 8 chr11 10564230 10564351 -138219121 + MIR SINE MIR 47 171 -91 31 26 0 0 chr11 10564408 10564446 -138219026 + AT_rich Low_complexity Low_complexity 1 38 0 428 250 116 0 chr11 10564582 10564694 -138218778 + MIR SINE MIR 116 240 -22 183 296 0 0 chr11 10565117 10565161 -138218311 + L2 LINE L2 3187 3230 -83 190 80 0 0 chr11 10565235 10565260 -138218212 - L2 LINE L2 -17 3296 3272 451 299 22 15 chr11 10565386 10565520 -138217952 + MIR SINE MIR 56 190 -72 218 289 0 0 chr11 10565716 10565768 -138217704 - MIR SINE MIR -17 245 194 773 260 54 27 chr11 10565778 10566001 -138217471 + MIR SINE MIR 34 262 0 239 325 0 26 chr11 10566002 10566079 -138217393 - MIR SINE MIR -100 162 88 200 281 0 0 chr11 10566394 10566451 -138217021 + CT-rich Low_complexity Low_complexity 3 59 0 686 287 96 9 chr11 10568575 10568805 -138214667 - MIR SINE MIR -12 250 1 564 299 111 27 chr11 10569090 10569461 -138214011 + MLT1K LTR MaLR 170 571 -17 525 287 81 6 chr11 10569606 10569780 -138213692 + MIR SINE MIR 2 188 -74 209 261 0 0 chr11 10570094 10570140 -138213332 - L2 LINE L2 -18 3254 3209 254 228 202 35 chr11 10570577 10570691 -138212781 - L2 LINE L2 0 3313 3181 593 373 159 7 chr11 10571229 10571650 -138211822 + L3 LINE CR1 986 1470 -107 230 197 115 16 chr11 10572416 10572477 -138210995 - MIR SINE MIR -118 144 78 661 296 30 15 chr11 10572657 10572881 -138210591 - MIR SINE MIR -23 239 5 459 166 80 160 chr11 10573208 10573395 -138210077 - MIR SINE MIR -56 206 35 270 281 33 52 chr11 10573858 10574011 -138209461 - MIR3 SINE MIR -30 178 29 495 225 159 0 chr11 10574355 10574493 -138208979 + MIR SINE MIR 52 211 -51 273 196 0 95 chr11 10574828 10574996 -138208476 + (CTGTG)n Simple_repeat Simple_repeat 4 155 0 1991 181 65 14 chr11 10576209 10576623 -138206849 - MER63B DNA MER1_type -1 435 1 468 307 132 60 chr11 10576719 10577441 -138206031 + L2 LINE L2 2275 3097 -175 2555 168 19 41 chr11 10577441 10577953 -138205519 - MLT1D LTR MaLR 0 505 5 468 307 132 60 chr11 10577953 10578143 -138205329 + L2 LINE L2 3097 3272 0 1065 122 0 0 chr11 10578188 10578327 -138205145 + AluSq/x SINE Alu 1 139 -174 334 254 0 0 chr11 10579526 10579593 -138203879 - L2 LINE L2 0 3313 3247 258 172 62 16 chr11 10579607 10579671 -138203801 + L2 LINE L2 3019 3085 -187 469 235 83 0 chr11 10579907 10580029 -138203443 - MIR SINE MIR -65 143 41 239 282 82 24 chr11 10580529 10580614 -138202858 + MIR3 SINE MIR 68 157 -51 690 302 108 23 chr11 10580713 10581110 -138202362 + MLT1K LTR MaLR 158 588 0 243 0 0 0 chr11 10581190 10581217 -138202255 + (CCCTAA)n Simple_repeat Simple_repeat 2 28 0 663 326 89 8 chr11 10582260 10582496 -138200976 - MIR SINE MIR -6 256 2 404 352 6 17 chr11 10583795 10583971 -138199501 + MER5B DNA MER1_type 4 177 -1 898 248 33 0 chr11 10584493 10584707 -138198765 + MER58A DNA MER1_type 1 221 -3 266 258 70 15 chr11 10585345 10585488 -138197984 + MIR SINE MIR 76 228 -34 2173 149 17 61 chr11 10586644 10587052 -138196420 + MLT1B LTR MaLR 1 390 0 4337 205 60 28 chr11 10587247 10587494 -138195978 + L1MB7 LINE L1 4186 4424 -1760 2067 133 0 0 chr11 10587494 10587821 -138195651 + AluSx SINE Alu 1 327 0 4337 205 60 28 chr11 10587821 10589065 -138194407 + L1MB7 LINE L1 4424 5803 -381 2275 107 0 3 chr11 10589065 10589356 -138194116 + AluSx SINE Alu 1 290 -22 4337 205 60 28 chr11 10589356 10589741 -138193731 + L1MB7 LINE L1 5803 6174 -10 291 241 24 12 chr11 10589810 10589893 -138193579 + MIR3 SINE MIR 108 191 -17 324 263 143 30 chr11 10590125 10590258 -138193214 - L2 LINE L2 -1 3312 3165 607 308 155 24 chr11 10592476 10592902 -138190570 + MLT1K LTR MaLR 106 587 -1 2984 145 34 6 chr11 10593711 10594058 -138189414 - L1MB5 LINE L1 -36 6138 5767 395 68 17 0 chr11 10594058 10594117 -138189355 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2984 145 34 6 chr11 10594117 10594325 -138189147 - L1MB5 LINE L1 -407 5767 5566 389 236 130 26 chr11 10594484 10594672 -138188800 - MIR SINE MIR -47 215 9 1062 156 6 0 chr11 10595292 10595465 -138188007 - L1MB5 LINE L1 -43 6131 5958 482 271 90 30 chr11 10595465 10595660 -138187812 - MIR SINE MIR -52 210 10 564 172 35 17 chr11 10595892 10596008 -138187464 + MER103 DNA DNA 48 165 -1 1895 142 17 0 chr11 10596056 10596352 -138187120 + AluSq SINE Alu 1 301 -12 910 156 17 8 chr11 10596367 10596605 -138186867 + GA-rich Low_complexity Low_complexity 1 240 0 674 220 226 0 chr11 10596696 10596873 -138186599 + MIR SINE MIR 8 224 -38 350 307 0 10 chr11 10597671 10597772 -138185700 - MIR SINE MIR -68 140 41 681 291 58 0 chr11 10598084 10598273 -138185199 + MIR SINE MIR 60 259 -3 515 328 75 33 chr11 10599143 10599475 -138183997 + Charlie7 DNA MER1_type 108 453 -2159 381 276 162 42 chr11 10599574 10599882 -138183590 + LTR33 LTR ERVL 1 345 -176 544 180 69 65 chr11 10599918 10600163 -138183309 + Charlie7 DNA MER1_type 2366 2611 -1 4148 37 0 0 chr11 10600185 10600712 -138182760 + L1PA3 LINE L1 5657 6183 0 1611 135 113 14 chr11 10601225 10601507 -138181965 + AluSx SINE Alu 1 310 -2 1421 170 0 45 chr11 10601519 10601807 -138181665 + AluJb SINE Alu 25 299 -13 267 240 240 0 chr11 10602253 10602353 -138181119 - MIR SINE MIR -32 176 52 205 261 141 22 chr11 10602850 10602942 -138180530 + MIR SINE MIR 154 256 -6 345 300 140 33 chr11 10603957 10603984 -138179488 - MIR SINE MIR -89 173 150 1292 150 12 38 chr11 10603984 10604224 -138179248 + MER46A DNA MER2_type 1 234 -2 345 300 140 33 chr11 10604224 10604346 -138179126 - MIR SINE MIR -112 150 8 231 288 0 0 chr11 10604809 10604882 -138178590 + MER113 DNA MER1_type? 21 93 -428 1026 258 9 0 chr11 10604898 10605123 -138178349 + MIR SINE MIR 36 262 0 518 212 112 39 chr11 10605132 10605315 -138178157 + MER113 DNA MER1_type? 127 295 -226 355 236 85 19 chr11 10605315 10605421 -138178051 - MER81 DNA DNA -1 113 1 518 212 112 39 chr11 10605421 10605573 -138177899 + MER113 DNA MER1_type? 295 519 -2 332 222 111 87 chr11 10605681 10606050 -138177422 + L1ME4a LINE L1 5742 6119 -2 1844 112 65 0 chr11 10606172 10606449 -138177023 + AluSx SINE Alu 1 295 -17 209 175 0 0 chr11 10606861 10606901 -138176571 + L2 LINE L2 3256 3295 -18 270 265 60 86 chr11 10607286 10607403 -138176069 - L2 LINE L2 -1 3271 3158 329 331 63 35 chr11 10607930 10608072 -138175400 + MIR SINE MIR 92 237 -25 280 229 83 104 chr11 10608388 10608532 -138174940 + MIR SINE MIR 13 153 -55 311 270 22 0 chr11 10609047 10609136 -138174336 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 453 286 34 20 chr11 10610223 10610370 -138173102 + MIR SINE MIR 103 251 -11 440 157 36 3 chr11 10610547 10610689 -138172783 - MER53 DNA DNA -2 187 1 421 339 83 12 chr11 10611190 10611358 -138172114 - MER5A DNA MER1_type -3 186 7 324 0 0 0 chr11 10611448 10611484 -138171988 + (TG)n Simple_repeat Simple_repeat 1 36 0 509 301 125 23 chr11 10611519 10611735 -138171737 - MIR SINE MIR -16 246 9 998 251 150 6 chr11 10611925 10612282 -138171190 + L1MC4a LINE L1 5530 5761 -403 242 281 0 0 chr11 10612282 10612367 -138171105 + (CATA)n Simple_repeat Simple_repeat 1 85 0 660 243 17 17 chr11 10612669 10612850 -138170622 - L1MD3 LINE L1 -11 7984 7804 294 320 72 16 chr11 10612888 10613013 -138170459 - L2 LINE L2 0 3272 3141 240 305 86 23 chr11 10613680 10613808 -138169664 - MIR SINE MIR -33 229 94 311 261 62 50 chr11 10613884 10614045 -138169427 + HAL1 LINE L1 26 188 -2319 1004 225 67 11 chr11 10614216 10614500 -138168972 + L1MC4a LINE L1 6272 6571 -1237 642 49 0 0 chr11 10614521 10614603 -138168869 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1232 90 0 24 chr11 10614621 10614788 -138168684 + THE1B LTR MaLR 200 362 -2 11719 86 24 5 chr11 10614790 10616341 -138167131 + THE1B-int LTR MaLR 1 1580 0 2314 121 3 62 chr11 10616341 10616508 -138166964 + THE1B LTR MaLR 1 176 -188 2678 16 0 7 chr11 10616508 10616817 -138166655 + AluYb8 SINE Alu 1 307 -11 2314 121 3 62 chr11 10616817 10617036 -138166436 + THE1B LTR MaLR 176 364 0 1069 216 127 27 chr11 10617037 10617402 -138166070 + L1MC4 LINE L1 7460 7934 -61 2075 116 3 13 chr11 10617402 10617705 -138165767 - AluSx SINE Alu -12 300 1 1069 216 127 27 chr11 10617705 10617761 -138165711 + L1MC4 LINE L1 7934 7983 -12 211 222 0 0 chr11 10618085 10618121 -138165351 + MER5B DNA MER1_type 1 36 -142 * 236 264 0 56 chr11 10618120 10618192 -138165280 - MER5B DNA MER1_type -85 93 26 248 157 17 209 chr11 10618216 10618271 -138165201 - MER5B DNA MER1_type -5 173 109 1865 107 29 0 chr11 10618271 10618543 -138164929 + AluSx SINE Alu 1 280 -32 261 0 0 0 chr11 10618543 10618572 -138164900 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 248 157 17 209 chr11 10618572 10618630 -138164842 - MER5B DNA MER1_type -67 111 81 270 267 116 27 chr11 10618693 10618839 -138164633 + HAL1 LINE L1 745 903 -1604 1302 263 25 50 chr11 10618842 10619242 -138164230 + L2 LINE L2 2921 3310 -3 687 265 130 41 chr11 10619242 10619759 -138163713 + HAL1 LINE L1 896 1458 -1049 1916 154 0 0 chr11 10620018 10620324 -138163148 + AluSx SINE Alu 1 306 -6 43 0 0 0 chr11 10620436 10620479 -138162993 + AT_rich Low_complexity Low_complexity 1 43 0 317 288 54 9 chr11 10620634 10620745 -138162727 - L2 LINE L2 -3 3269 3154 250 313 22 22 chr11 10621133 10621267 -138162205 - L2 LINE L2 -495 2819 2686 212 226 19 0 chr11 10621345 10621398 -138162074 + MIR SINE MIR 88 141 -121 460 259 90 55 chr11 10621740 10621941 -138161531 - L2 LINE L2 -832 2482 2275 237 237 26 26 chr11 10622315 10622410 -138161062 + GA-rich Low_complexity Low_complexity 2 152 0 216 0 0 0 chr11 10623075 10623099 -138160373 + (TTA)n Simple_repeat Simple_repeat 2 25 0 183 326 0 0 chr11 10623138 10623181 -138160291 + L2 LINE L2 3137 3179 -93 734 284 19 45 chr11 10623218 10623486 -138159986 - MIR SINE MIR 0 262 2 296 186 0 34 chr11 10624161 10624220 -138159252 - LTR67 LTR ERVL -9 548 492 303 122 0 0 chr11 10624431 10624480 -138158992 + (TCC)n Simple_repeat Simple_repeat 1 49 0 647 285 105 6 chr11 10624757 10624987 -138158485 - MIR SINE MIR -12 250 1 516 309 157 47 chr11 10625304 10625750 -138157722 - L3 LINE CR1 -193 1384 890 1620 257 90 23 chr11 10626283 10626805 -138156667 + L2 LINE L2 2094 2650 -664 1162 137 26 6 chr11 10626821 10627053 -138156419 - AluJb SINE Alu -6 306 26 1186 223 156 35 chr11 10627064 10627113 -138156359 + L2 LINE L2 2692 2734 -579 2031 126 7 3 chr11 10627113 10627415 -138156057 - AluSx SINE Alu -9 303 1 1186 223 156 35 chr11 10627415 10627921 -138155551 + L2 LINE L2 2734 3311 -2 182 308 0 0 chr11 10627954 10628006 -138155466 - MIR SINE MIR -101 161 110 443 252 71 24 chr11 10628709 10628836 -138154636 - L2 LINE L2 0 3272 3140 206 62 31 0 chr11 10628836 10628868 -138154604 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 883 268 68 8 chr11 10628870 10629105 -138154367 - MIR SINE MIR -5 257 9 273 306 97 73 chr11 10629351 10629557 -138153915 - MIR SINE MIR -6 256 46 581 136 64 129 chr11 10630259 10630312 -138153160 - AluJ SINE Alu -171 131 76 2247 64 40 0 chr11 10630312 10630608 -138152864 - AluY SINE Alu -3 308 1 581 136 64 129 chr11 10630608 10630694 -138152778 - AluJ SINE Alu -226 76 1 252 299 65 0 chr11 10631421 10631498 -138151974 + L2 LINE L2 2624 2705 -609 187 275 208 20 chr11 10632347 10632496 -138150976 - MER5B DNA MER1_type -1 177 1 465 310 75 16 chr11 10632959 10633343 -138150129 + MLT1L LTR MaLR 121 584 -31 378 331 93 65 chr11 10635062 10635719 -138147753 + L2 LINE L2 2596 3264 -8 2013 151 0 0 chr11 10636041 10636345 -138147127 + AluSx SINE Alu 1 304 -8 1724 144 56 105 chr11 10637109 10637519 -138145953 + MLT1B LTR MaLR 1 390 0 382 253 69 120 chr11 10637532 10637759 -138145713 - MIR SINE MIR -53 209 3 1900 167 0 0 chr11 10638854 10639166 -138144306 + AluSx SINE Alu 1 312 0 547 248 35 14 chr11 10639227 10639368 -138144104 + MER117 DNA MER1_type 1 144 -53 2229 94 3 3 chr11 10639465 10639774 -138143698 - AluSp SINE Alu -2 311 3 418 154 0 0 chr11 10641031 10641123 -138142349 - AluJo SINE Alu 0 311 220 1134 164 0 0 chr11 10641123 10641300 -138142172 - AluJo SINE Alu -135 177 1 1586 144 55 74 chr11 10641712 10641965 -138141507 - MLT1F1 LTR MaLR -261 306 59 713 110 0 0 chr11 10641965 10642065 -138141407 + HY3 scRNA scRNA 1 100 -1 1586 144 55 74 chr11 10642065 10642123 -138141349 - MLT1F1 LTR MaLR -508 59 1 301 332 135 52 chr11 10642137 10642366 -138141106 - L2 LINE L2 -45 3227 2980 1879 125 14 0 chr11 10642781 10643061 -138140411 + AluSx SINE Alu 24 307 -5 189 305 17 0 chr11 10644256 10644315 -138139157 - L2 LINE L2 -91 3222 3163 247 313 30 0 chr11 10645061 10645160 -138138312 - LTR67 LTR ERVL -17 540 439 232 257 86 38 chr11 10645374 10645479 -138137993 - LTR67 LTR ERVL -349 208 99 201 319 124 9 chr11 10645626 10645739 -138137733 - MIR SINE MIR -34 228 103 2019 169 0 3 chr11 10645752 10646065 -138137407 - AluJb SINE Alu 0 312 1 2124 101 10 42 chr11 10646813 10647121 -138136351 + AluSq SINE Alu 1 298 -15 4486 125 5 65 chr11 10647245 10647980 -138135492 + LTR8 LTR ERV1 1 691 0 333 0 0 0 chr11 10648004 10648041 -138135431 + (TG)n Simple_repeat Simple_repeat 2 38 0 392 196 54 71 chr11 10648042 10648154 -138135318 + MLT1F1 LTR MaLR 88 197 -370 210 71 0 0 chr11 10648154 10648182 -138135290 + (TC)n Simple_repeat Simple_repeat 2 29 0 589 247 80 7 chr11 10648187 10648337 -138135135 + MER96 DNA MER1_type? 12 172 -3 391 297 16 104 chr11 10648848 10649097 -138134375 - MIR SINE MIR -34 228 2 1967 122 18 0 chr11 10649181 10649467 -138134005 + AluSx SINE Alu 2 292 -20 366 249 127 24 chr11 10649666 10649831 -138133641 + MIR SINE MIR 25 206 -56 32 57 0 0 chr11 10649831 10649884 -138133588 + AT_rich Low_complexity Low_complexity 1 53 0 938 161 0 0 chr11 10650277 10650414 -138133058 + FRAM SINE Alu 1 137 -39 210 71 0 0 chr11 10650417 10650445 -138133027 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 287 254 40 111 chr11 10650673 10650860 -138132612 - MLT1L LTR MaLR -360 228 87 203 139 38 13 chr11 10650905 10650984 -138132488 + (TG)n Simple_repeat Simple_repeat 1 81 0 207 250 26 13 chr11 10650994 10651070 -138132402 + (TATG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr11 10651122 10651146 -138132326 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1183 106 10 60 chr11 10651146 10651345 -138132127 - L1PB2 LINE L1 -11 6140 5952 197 278 67 44 chr11 10652221 10652311 -138131161 + MIR SINE MIR 110 201 -61 * 336 219 105 44 chr11 10652305 10652419 -138131053 - L2 LINE L2 0 3313 3193 1986 109 24 10 chr11 10652751 10653044 -138130428 + AluSx SINE Alu 9 305 -7 2102 131 0 13 chr11 10653044 10653357 -138130115 + AluSg SINE Alu 1 309 -1 451 257 128 57 chr11 10653369 10653735 -138129737 + L2 LINE L2 2024 2415 -899 723 218 0 0 chr11 10653811 10653935 -138129537 - FLAM_C SINE Alu -18 125 2 633 317 71 44 chr11 10653953 10654386 -138129086 + L2 LINE L2 2645 3088 -184 240 280 106 26 chr11 10654389 10654578 -138128894 + L1MC4a LINE L1 4726 4929 -1217 628 126 39 19 chr11 10654864 10654967 -138128505 + FLAM_C SINE Alu 29 133 -10 686 289 117 57 chr11 10655051 10655544 -138127928 + L1MC4a LINE L1 5297 5830 -1978 1299 189 12 114 chr11 10655544 10655690 -138127782 + AluSp SINE Alu 1 96 -217 1937 130 7 4 chr11 10655690 10655967 -138127505 + AluSx SINE Alu 1 278 -34 1299 189 12 114 chr11 10655967 10656154 -138127318 + AluSp SINE Alu 96 300 -13 686 289 117 57 chr11 10656154 10656224 -138127248 + L1MC4a LINE L1 5830 5894 -1914 496 239 43 43 chr11 10656477 10656640 -138126832 + LTR41 LTR ERVL 10 172 -601 1894 126 20 7 chr11 10657112 10657406 -138126066 + L1PA13 LINE L1 5866 6163 0 710 209 0 20 chr11 10657429 10657582 -138125890 + MIR SINE MIR 104 253 -9 222 327 62 18 chr11 10657574 10657622 -138125850 + L3 LINE CR1 1165 1209 -368 * 2205 134 0 0 chr11 10657622 10657921 -138125551 + AluSx SINE Alu 1 299 -13 222 327 62 18 chr11 10657921 10657985 -138125487 + L3 LINE CR1 1209 1282 -295 438 235 17 59 chr11 10658057 10658176 -138125296 - MER81 DNA DNA 0 114 1 190 345 35 17 chr11 10658203 10658319 -138125153 + L3 LINE CR1 1425 1542 -35 676 287 56 3 chr11 10658342 10658564 -138124908 + MIR SINE MIR 20 249 -13 819 225 22 6 chr11 10658609 10658791 -138124681 + MER5A DNA MER1_type 5 189 0 1971 158 19 3 chr11 10659608 10659931 -138123541 + LTR32 LTR ERVL 15 342 -129 1007 128 0 6 chr11 10659990 10660146 -138123326 + LTR32 LTR ERVL 317 471 0 817 180 0 0 chr11 10660717 10660839 -138122633 + FLAM_C SINE Alu 2 123 -20 278 188 165 24 chr11 10661148 10661233 -138122239 + MIR SINE MIR 164 260 -2 639 261 117 51 chr11 10661296 10661553 -138121919 - L1MEd LINE L1 -5509 610 337 334 191 43 21 chr11 10661683 10661714 -138121758 - L1MEd LINE L1 -6001 118 89 333 0 0 0 chr11 10661714 10661751 -138121721 + (TG)n Simple_repeat Simple_repeat 2 38 0 334 191 43 21 chr11 10661751 10661813 -138121659 - L1MEd LINE L1 -6030 89 23 2464 112 6 6 chr11 10662140 10662480 -138120992 + L1PB1 LINE L1 5803 6142 -9 2420 157 8 18 chr11 10662546 10662940 -138120532 + MLT1B LTR MaLR 1 390 0 865 180 0 7 chr11 10663056 10663206 -138120266 + AluJb SINE Alu 140 288 -24 563 77 70 4 chr11 10663206 10663499 -138119973 + (TA)n Simple_repeat Simple_repeat 1 312 0 914 198 6 0 chr11 10663569 10663726 -138119746 + FRAM SINE Alu 1 158 -18 1214 300 31 80 chr11 10664134 10664821 -138118651 + L2 LINE L2 2054 2706 -608 1975 132 7 20 chr11 10664824 10665127 -138118345 - AluSx SINE Alu -13 299 1 403 292 146 10 chr11 10665701 10665893 -138117579 + L2 LINE L2 2836 3053 -219 1095 167 82 26 chr11 10666114 10666459 -138117013 + Charlie5 DNA MER1_type 5 2530 -82 2164 100 7 0 chr11 10666459 10666760 -138116712 - AluSx SINE Alu -9 303 1 426 182 52 0 chr11 10668181 10668258 -138115214 - L1MB7 LINE L1 -56 6128 6048 205 29 59 0 chr11 10669735 10669769 -138113703 + (TA)n Simple_repeat Simple_repeat 2 37 0 561 309 100 9 chr11 10669892 10670112 -138113360 + MIR SINE MIR 20 259 -3 622 228 18 0 chr11 10670117 10670231 -138113241 - FLAM_A SINE Alu -16 117 2 245 277 60 24 chr11 10670259 10670342 -138113130 - MIR SINE MIR -81 127 42 2259 209 8 31 chr11 10670473 10670989 -138112483 - L1ME1 LINE L1 -4 6162 5659 812 144 0 0 chr11 10672104 10672215 -138111257 + AluJ SINE Alu 17 127 -185 2248 67 14 0 chr11 10672315 10672598 -138110874 - L1PA13 LINE L1 -4 6159 5873 1855 170 10 0 chr11 10673068 10673362 -138110110 + AluJb SINE Alu 1 297 -15 1502 173 46 11 chr11 10673369 10673653 -138109819 + AluJo SINE Alu 1 294 -18 4254 260 103 22 chr11 10673713 10674666 -138108806 - L2 LINE L2 -2 3311 2436 2349 184 70 11 chr11 10674666 10675107 -138108365 + LTR24 LTR ERV1 1 467 0 4254 260 103 22 chr11 10675107 10675792 -138107680 - L2 LINE L2 -877 2436 1526 752 218 151 67 chr11 10676425 10676737 -138106735 - MER46C DNA MER2_type 0 338 1 422 252 96 69 chr11 10676883 10677101 -138106371 - MLT1L LTR MaLR -175 440 217 976 164 31 6 chr11 10677112 10677271 -138106201 - MER20 DNA MER1_type -2 217 55 345 255 48 75 chr11 10677296 10677484 -138105988 - MLT1L LTR MaLR -432 183 1 851 226 0 0 chr11 10677526 10677685 -138105787 + AluJ SINE Alu 137 295 -17 240 338 103 15 chr11 10678283 10678419 -138105053 - L2 LINE L2 0 3272 3125 1887 161 0 13 chr11 10678786 10679084 -138104388 + AluJb SINE Alu 3 296 -16 379 209 136 0 chr11 10679086 10679196 -138104276 - MIR SINE MIR -52 210 86 762 157 50 0 chr11 10679337 10679477 -138103995 + L1MB4 LINE L1 6034 6180 0 234 285 87 23 chr11 10679665 10679837 -138103635 - L1ME LINE L1 -292 5829 5647 21 0 0 0 chr11 10680109 10680130 -138103342 + AT_rich Low_complexity Low_complexity 1 21 0 1326 130 10 0 chr11 10680224 10680424 -138103048 + MER68 LTR ERV1 17 218 -344 1266 215 97 35 chr11 10681976 10682316 -138101156 - MLT1A1 LTR MaLR 0 365 5 408 281 54 18 chr11 10682631 10682798 -138100674 - L1ME3A LINE L1 -314 5856 5684 515 276 49 49 chr11 10682802 10683045 -138100427 - L1ME3A LINE L1 -2035 4111 3869 266 327 10 29 chr11 10683075 10683179 -138100293 + LTR16C LTR ERVL 75 176 -315 211 234 0 31 chr11 10684374 10684438 -138099034 + CT-rich Low_complexity Low_complexity 2 63 0 347 149 172 0 chr11 10684995 10685082 -138098390 - L1MC2 LINE L1 -5 6339 6238 245 211 18 0 chr11 10685727 10685784 -138097688 + tRNA-Thr-ACT tRNA tRNA 8 65 -12 231 289 13 26 chr11 10691093 10691169 -138092303 + tRNA-Ala-GCG tRNA tRNA 1 75 0 540 265 141 103 chr11 10692286 10692684 -138090788 + L2 LINE L2 2590 3029 -284 2615 55 0 0 chr11 10692684 10692993 -138090479 - AluY SINE Alu -2 309 1 540 265 141 103 chr11 10692993 10693280 -138090192 + L2 LINE L2 3029 3304 -9 268 167 0 0 chr11 10693468 10693516 -138089956 + FLAM_A SINE Alu 86 133 0 1425 142 36 113 chr11 10693531 10693868 -138089604 + AluJo SINE Alu 2 312 0 193 284 148 23 chr11 10693879 10693967 -138089505 + MIR SINE MIR 153 251 -11 34 0 0 22 chr11 10695921 10695943 -138087529 + AT_rich Low_complexity Low_complexity 1 22 -22 725 180 0 33 chr11 10695943 10696065 -138087407 + FLAM_C SINE Alu 1 118 -15 34 0 0 22 chr11 10696065 10696087 -138087385 + AT_rich Low_complexity Low_complexity 22 44 0 189 0 74 0 chr11 10696198 10696225 -138087247 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2048 131 0 0 chr11 10696225 10696507 -138086965 - AluSx SINE Alu -1 309 2 736 219 65 69 chr11 10697635 10697881 -138085591 + MER112 DNA MER1_type 12 256 -4 197 62 0 31 chr11 10698405 10698437 -138085035 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 493 253 136 32 chr11 10699373 10699594 -138083878 + MIR SINE MIR 11 254 -8 2236 104 0 31 chr11 10699678 10699996 -138083476 + AluSg SINE Alu 1 308 -2 21 0 0 56 chr11 10702801 10702820 -138080652 + AT_rich Low_complexity Low_complexity 1 19 -15 2191 111 7 7 chr11 10702820 10703126 -138080346 + AluSp SINE Alu 1 306 -7 21 0 0 56 chr11 10703126 10703142 -138080330 + AT_rich Low_complexity Low_complexity 19 34 0 2217 109 0 23 chr11 10703485 10703789 -138079683 + AluSx SINE Alu 2 298 -14 2118 131 13 3 chr11 10704352 10704650 -138078822 + AluSx SINE Alu 1 301 -11 220 258 45 0 chr11 10704827 10704916 -138078556 + GA-rich Low_complexity Low_complexity 2 94 0 257 211 195 44 chr11 10705182 10705357 -138078115 + MIR SINE MIR 22 217 -45 1556 70 15 10 chr11 10706805 10707037 -138076435 - AluSp SINE Alu 0 313 95 280 217 121 0 chr11 10707286 10707369 -138076103 - L2 LINE L2 0 3272 3180 2124 134 3 0 chr11 10707437 10707743 -138075729 + AluSx SINE Alu 1 307 -5 791 131 0 0 chr11 10707997 10708104 -138075368 + FLAM_C SINE Alu 2 108 -35 249 231 58 0 chr11 10709281 10709333 -138074139 - L1ME3A LINE L1 -75 6095 6041 360 273 70 31 chr11 10711034 10711050 -138072422 + MIR3 SINE MIR 3 17 -191 1686 163 0 11 chr11 10711050 10711326 -138072146 + AluJo SINE Alu 1 273 -39 360 273 70 31 chr11 10711326 10711437 -138072035 + MIR3 SINE MIR 17 135 -73 23 0 0 0 chr11 10711567 10711590 -138071882 + AT_rich Low_complexity Low_complexity 1 23 0 261 241 193 0 chr11 10712334 10712417 -138071055 + MIR SINE MIR 48 146 -62 1943 130 0 3 chr11 10712460 10712776 -138070696 - AluSx SINE Alu 0 315 1 878 147 0 22 chr11 10712917 10713048 -138070424 + AluJo/FLAM SINE Alu 1 129 -169 2399 72 3 0 chr11 10713048 10713340 -138070132 - AluSp SINE Alu -19 294 2 2267 111 7 0 chr11 10713403 10713729 -138069743 - AluSx SINE Alu 0 332 5 2260 113 7 0 chr11 10714209 10714511 -138068961 + AluSx SINE Alu 1 304 -8 235 303 131 16 chr11 10714908 10715030 -138068442 + L2 LINE L2 3137 3272 0 211 363 81 0 chr11 10716121 10716245 -138067227 - L2 LINE L2 -1739 1575 1442 425 229 93 34 chr11 10716378 10716496 -138066976 - MER5A DNA MER1_type -56 133 9 657 278 18 39 chr11 10716812 10717093 -138066379 - L2 LINE L2 -2900 414 140 2322 99 3 3 chr11 10717461 10717765 -138065707 - AluSx SINE Alu -8 304 1 1579 195 7 0 chr11 10718279 10718571 -138064901 - AluJb SINE Alu -16 296 3 457 193 30 66 chr11 10718852 10718958 -138064514 + L1M4 LINE L1 4395 4494 -1652 2191 122 3 3 chr11 10718958 10719262 -138064210 + AluJb SINE Alu 1 304 -8 457 193 30 66 chr11 10719262 10719321 -138064151 + L1M4 LINE L1 4494 4554 -1592 1697 155 37 0 chr11 10719410 10719713 -138063759 + AluJb SINE Alu 1 313 0 353 349 67 7 chr11 10719805 10719954 -138063518 + MIR SINE MIR 27 184 -78 892 173 28 56 chr11 10720145 10720324 -138063148 + MER69A DNA AcHobo 2 175 -2 2370 77 13 7 chr11 10720357 10720667 -138062805 + AluSx SINE Alu 1 312 0 2103 163 94 25 chr11 10721006 10721443 -138062029 - MLT1C LTR MaLR 0 467 1 192 324 27 0 chr11 10721634 10721708 -138061764 + MIR SINE MIR 15 90 -172 2030 138 26 64 chr11 10721730 10722120 -138061352 + THE1C LTR MaLR 1 375 0 339 268 35 81 chr11 10722140 10722338 -138061134 + MIR SINE MIR 69 257 -5 636 263 129 32 chr11 10722432 10722931 -138060541 + L2 LINE L2 2738 3299 -14 331 307 222 15 chr11 10723664 10723934 -138059538 - L2 LINE L2 -924 2390 2065 338 235 292 25 chr11 10724132 10724375 -138059097 - L2 LINE L2 -1267 2047 1740 1964 107 21 17 chr11 10724674 10724965 -138058507 - AluSp SINE Alu -21 292 1 330 207 200 64 chr11 10727111 10727251 -138056221 + MER5A DNA MER1_type 1 159 -30 1736 132 59 24 chr11 10727368 10727655 -138055817 - AluJb SINE Alu -15 297 1 195 42 0 0 chr11 10728089 10728113 -138055359 + (A)n Simple_repeat Simple_repeat 1 24 0 1968 130 10 10 chr11 10731557 10731858 -138051614 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr11 10732102 10732133 -138051339 + AT_rich Low_complexity Low_complexity 1 31 0 2265 88 3 7 chr11 10734430 10734725 -138048747 - AluSx SINE Alu -18 294 1 771 201 107 12 chr11 10735151 10735320 -138048152 - MER5A DNA MER1_type -1 188 4 825 141 8 31 chr11 10735323 10735451 -138048021 - FLAM_C SINE Alu -7 126 2 243 71 0 143 chr11 10735925 10735981 -138047491 - Alu SINE Alu -170 132 85 235 179 0 75 chr11 10737734 10737801 -138045671 + GA-rich Low_complexity Low_complexity 1 62 0 23 68 0 0 chr11 10739709 10739753 -138043719 + AT_rich Low_complexity Low_complexity 1 44 0 2094 135 0 0 chr11 10740001 10740290 -138043182 - AluSx SINE Alu -21 291 3 21 36 0 0 chr11 10740292 10740320 -138043152 + AT_rich Low_complexity Low_complexity 1 28 0 1482 171 19 15 chr11 10740482 10740745 -138042727 + AluJo SINE Alu 32 295 -17 1771 161 14 0 chr11 10740746 10741026 -138042446 + AluJb SINE Alu 2 285 -27 216 242 0 55 chr11 10741246 10741337 -138042135 + L2 LINE L2 2211 2296 -1018 632 283 115 4 chr11 10741367 10741611 -138041861 + MER102a DNA MER1_type 44 314 -16 604 264 66 0 chr11 10741684 10741851 -138041621 + MIR SINE MIR 37 214 -48 214 387 52 11 chr11 10741962 10742153 -138041319 + L2 LINE L2 2442 2640 -674 2313 108 0 3 chr11 10742213 10742519 -138040953 + AluSg SINE Alu 1 305 -5 1134 174 0 6 chr11 10742585 10742763 -138040709 + MER5B DNA MER1_type 2 178 0 195 337 59 0 chr11 10743136 10743237 -138040235 + L2 LINE L2 2728 2834 -480 518 239 220 62 chr11 10743318 10743577 -138039895 - L2 LINE L2 -775 2539 2240 256 247 21 86 chr11 10743936 10743984 -138039488 - L2 LINE L2 -607 2707 2666 1969 154 7 3 chr11 10743984 10744289 -138039183 + AluJb SINE Alu 5 310 -2 256 247 21 86 chr11 10744289 10744333 -138039139 - L2 LINE L2 -648 2666 2621 2139 278 89 51 chr11 10744494 10745683 -138037789 + L2 LINE L2 2035 3252 -61 1909 168 0 3 chr11 10745709 10746013 -138037459 + AluSx SINE Alu 1 303 -9 274 226 16 0 chr11 10746086 10746148 -138037324 + L2 LINE L2 3251 3313 0 209 293 83 53 chr11 10746146 10746279 -138037193 - MIR SINE MIR -59 203 67 * 1357 173 108 138 chr11 10746384 10746905 -138036567 - MLT1D LTR MaLR 0 505 1 341 259 25 0 chr11 10747041 10747122 -138036350 - L2 LINE L2 0 3272 3190 465 244 0 0 chr11 10747142 10747232 -138036240 + MER94 DNA DNA 45 134 0 2138 117 35 132 chr11 10747556 10747817 -138035655 + Tigger2a DNA MER2_type 1 285 -2423 1963 141 0 54 chr11 10747817 10748130 -138035342 + AluJb SINE Alu 1 296 -16 882 147 0 22 chr11 10748133 10748269 -138035203 - AluJo/FLAM SINE Alu -169 133 1 2138 117 35 132 chr11 10748269 10748482 -138034990 + Tigger2a DNA MER2_type 287 433 -1 189 0 0 0 chr11 10748711 10748732 -138034740 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1920 138 0 7 chr11 10748732 10749014 -138034458 - AluSx SINE Alu -32 280 1 23 101 0 0 chr11 10749016 10749095 -138034377 + AT_rich Low_complexity Low_complexity 1 79 0 1678 107 99 12 chr11 10749101 10749383 -138034089 + AluSx SINE Alu 11 314 0 1694 158 59 33 chr11 10749669 10749973 -138033499 - AluJo SINE Alu 0 312 1 1934 169 36 2 chr11 10750050 10750464 -138033008 + L1 LINE L1 3140 3567 -2579 2460 166 98 35 chr11 10750482 10750972 -138032500 - L1 LINE L1 -2647 3499 3042 432 0 0 0 chr11 10750972 10751020 -138032452 + (TG)n Simple_repeat Simple_repeat 1 48 0 2003 114 4 4 chr11 10751027 10751299 -138032173 - AluSq SINE Alu -41 272 1 2460 166 98 35 chr11 10751299 10751461 -138032011 - L1 LINE L1 -3109 3037 2797 1236 128 190 0 chr11 10751500 10751711 -138031761 + MER21A LTR ERV1 13 263 -668 2702 146 56 79 chr11 10751717 10752286 -138031186 + MER21A LTR ERV1 376 931 0 581 198 63 0 chr11 10752967 10753078 -138030394 + FLAM_C SINE Alu 2 119 -24 842 168 0 0 chr11 10753390 10753515 -138029957 - FLAM_C SINE Alu -8 125 1 221 311 54 14 chr11 10753602 10753676 -138029796 + L2 LINE L2 3229 3305 -8 454 249 305 5 chr11 10753732 10753929 -138029543 - MIR SINE MIR -4 258 3 207 345 64 36 chr11 10754134 10754244 -138029228 - MER91A DNA MER1_type -62 134 22 863 227 0 0 chr11 10754529 10754701 -138028771 - FRAM SINE Alu -1 175 4 198 128 0 0 chr11 10754719 10754758 -138028714 + (A)n Simple_repeat Simple_repeat 1 39 0 1843 211 3 37 chr11 10754766 10755025 -138028447 + MLT1A1 LTR MaLR 1 245 -120 2189 103 10 10 chr11 10755025 10755326 -138028146 - AluSx SINE Alu -11 301 1 1843 211 3 37 chr11 10755326 10755440 -138028032 + MLT1A1 LTR MaLR 245 361 -4 22 0 0 0 chr11 10755521 10755543 -138027929 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 10755732 10755759 -138027713 + (A)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr11 10755935 10755961 -138027511 + AT_rich Low_complexity Low_complexity 1 26 0 605 241 0 35 chr11 10756151 10756292 -138027180 - L2 LINE L2 0 3272 3137 2312 135 21 26 chr11 10757081 10757458 -138026014 - THE1C LTR MaLR 0 375 1 10449 119 26 38 chr11 10757458 10758577 -138024895 - THE1C-int LTR MaLR 0 1580 484 2043 131 0 13 chr11 10758577 10758875 -138024597 - AluSx SINE Alu -18 294 1 10449 119 26 38 chr11 10758875 10759354 -138024118 - THE1C-int LTR MaLR -1096 484 1 2236 135 18 61 chr11 10759354 10759397 -138024075 - THE1C LTR MaLR 0 375 332 2373 82 3 0 chr11 10759397 10759702 -138023770 + AluY SINE Alu 1 306 -5 2236 135 18 61 chr11 10759702 10760050 -138023422 - THE1C LTR MaLR -43 332 1 205 291 81 12 chr11 10760330 10760416 -138023056 + MIR3 SINE MIR 104 195 -13 506 302 132 19 chr11 10760453 10760665 -138022807 - MIR SINE MIR -21 241 6 2583 54 0 0 chr11 10760841 10761139 -138022333 + AluY SINE Alu 1 298 -13 1648 194 14 0 chr11 10761625 10761919 -138021553 - AluJb SINE Alu -8 304 7 1938 125 44 0 chr11 10762221 10762518 -138020954 + AluSq SINE Alu 1 309 0 1606 193 3 10 chr11 10762583 10762717 -138020755 + AluJo SINE Alu 1 134 -178 2186 137 0 0 chr11 10762717 10763017 -138020455 + AluSx SINE Alu 1 300 -12 1606 193 3 10 chr11 10763017 10763187 -138020285 + AluJo SINE Alu 134 303 -9 345 345 79 23 chr11 10763266 10763570 -138019902 + ERVL LTR ERVL 299 619 -5145 2252 96 93 31 chr11 10763655 10764008 -138019464 - THE1C LTR MaLR 0 375 1 2174 200 107 14 chr11 10764030 10764515 -138018957 + MLT1F LTR MaLR 5 534 -8 3395 106 22 22 chr11 10764626 10765119 -138018353 + MER1A DNA MER1_type 37 529 0 343 358 0 6 chr11 10765150 10765323 -138018149 + ERVL LTR ERVL 960 1131 -4633 2024 138 14 0 chr11 10765427 10765723 -138017749 - AluSx SINE Alu -11 301 2 3863 107 24 0 chr11 10765734 10766266 -138017206 - L1PA14 LINE L1 -1 6160 5616 892 188 6 12 chr11 10766339 10766499 -138016973 - FRAM SINE Alu -17 159 1 260 268 134 31 chr11 10767093 10767220 -138016252 + ERVL LTR ERVL 1852 1991 -3663 422 224 31 10 chr11 10767222 10767320 -138016152 + ERVL LTR ERVL 4565 4664 -1100 2625 120 26 0 chr11 10767327 10767711 -138015761 - L1PA14 LINE L1 -91 6070 5677 619 243 78 34 chr11 10767763 10767969 -138015503 + MER58C DNA MER1_type 1 215 0 467 317 65 9 chr11 10767979 10768209 -138015263 + ERVL LTR ERVL 4721 4963 -801 629 154 95 53 chr11 10768401 10768538 -138014934 + L1MD3 LINE L1 7812 7959 -36 2096 109 53 0 chr11 10768538 10768822 -138014650 - AluSx SINE Alu -13 299 1 629 154 95 53 chr11 10768822 10768853 -138014619 + L1MD3 LINE L1 7959 7987 -8 654 183 17 35 chr11 10768854 10768969 -138014503 + FLAM_C SINE Alu 2 114 -29 22 35 0 0 chr11 10768987 10769016 -138014456 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr11 10769184 10769228 -138014244 + AT_rich Low_complexity Low_complexity 1 44 0 869 147 0 0 chr11 10769228 10769344 -138014128 - FLAM_C SINE Alu -15 118 3 23 0 0 0 chr11 10769569 10769592 -138013880 + AT_rich Low_complexity Low_complexity 1 23 0 1906 152 3 0 chr11 10769595 10769891 -138013581 - AluJb SINE Alu -10 302 6 192 200 0 0 chr11 10770001 10770036 -138013436 + MIR SINE MIR 195 229 -33 1586 171 36 43 chr11 10770708 10771013 -138012459 + AluJo SINE Alu 1 303 -9 2170 108 7 0 chr11 10771463 10771749 -138011723 - AluSg SINE Alu -22 288 1 1801 195 142 33 chr11 10771967 10772310 -138011162 + MLT1F1 LTR MaLR 1 411 -156 2519 61 0 0 chr11 10772310 10772607 -138010865 - AluY SINE Alu -14 297 1 1801 195 142 33 chr11 10772607 10772784 -138010688 + MLT1F1 LTR MaLR 411 567 0 384 204 159 0 chr11 10772786 10772899 -138010573 + MIR SINE MIR 117 247 -15 373 250 52 46 chr11 10773023 10773204 -138010268 - MIR SINE MIR -49 213 34 445 276 29 0 chr11 10773224 10773329 -138010143 - L2 LINE L2 -12 3301 3194 24 0 0 0 chr11 10774622 10774646 -138008826 + AT_rich Low_complexity Low_complexity 1 24 0 555 282 219 15 chr11 10775278 10775692 -138007780 + L2 LINE L2 2726 3244 -69 318 341 133 9 chr11 10776066 10776292 -138007180 - MER112 DNA MER1_type -4 256 3 1762 181 7 0 chr11 10776700 10776999 -138006473 - AluJo SINE Alu -11 301 1 1409 192 130 11 chr11 10777008 10777269 -138006203 - AluJo SINE Alu -10 292 1 376 174 257 28 chr11 10777270 10777379 -138006093 - MIR3 SINE MIR -41 167 34 1466 173 36 11 chr11 10777584 10777861 -138005611 + AluJo SINE Alu 11 294 -18 929 190 0 6 chr11 10777934 10778092 -138005380 - AluJb SINE Alu -155 157 1 195 215 65 129 chr11 10779560 10779622 -138003850 + MIR SINE MIR 161 217 -45 2140 113 0 44 chr11 10779622 10779758 -138003714 + AluSx SINE Alu 1 141 -171 1654 125 0 62 chr11 10779758 10780030 -138003442 + AluSx SINE Alu 1 255 -57 2140 113 0 44 chr11 10780030 10780212 -138003260 + AluSx SINE Alu 141 305 -7 195 215 65 129 chr11 10780212 10780242 -138003230 + MIR SINE MIR 217 247 -15 289 329 58 15 chr11 10780410 10780547 -138002925 - MIR SINE MIR -6 256 114 231 328 15 76 chr11 10781443 10781574 -138001898 - L2 LINE L2 -337 2935 2813 1869 310 52 47 chr11 10781817 10783588 -137999884 - Charlie1 DNA MER1_type -236 2525 746 814 165 0 15 chr11 10784330 10784463 -137999009 - MER58A DNA MER1_type 0 167 37 371 296 186 20 chr11 10785664 10785863 -137997609 - MIR SINE MIR -19 243 12 289 259 76 61 chr11 10787247 10787378 -137996094 - MER5A DNA MER1_type 0 189 57 23 33 0 0 chr11 10788381 10788411 -137995061 + AT_rich Low_complexity Low_complexity 1 30 0 2063 61 34 4 chr11 10788611 10788875 -137994597 - L1PA5 LINE L1 -2 6152 5881 1601 162 80 52 chr11 10788997 10789362 -137994110 + THE1C LTR MaLR 1 375 0 777 107 214 0 chr11 10789482 10789613 -137993859 + AluSp SINE Alu 153 311 -2 829 301 44 72 chr11 10789613 10790293 -137993179 + ERVL LTR ERVL 785 1445 -4319 2025 142 7 20 chr11 10791326 10791628 -137991844 - AluJb SINE Alu -14 298 1 796 176 0 0 chr11 10791712 10791843 -137991629 - FLAM_C SINE Alu 0 143 13 226 246 0 0 chr11 10792049 10792114 -137991358 - HAL1 LINE L1 0 2507 2443 341 152 3 5 chr11 10792173 10792247 -137991225 + FLAM SINE Alu 72 131 -2 2732 124 13 52 chr11 10792265 10792726 -137990746 + MER65A LTR ERV1 1 443 -2 1177 132 11 11 chr11 10792950 10793124 -137990348 + AluSg/x SINE Alu 123 296 -14 2338 101 0 0 chr11 10793124 10793420 -137990052 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr11 10793753 10793779 -137989693 + AT_rich Low_complexity Low_complexity 1 26 0 1862 152 0 3 chr11 10793779 10794069 -137989403 - AluSx SINE Alu -23 289 1 203 183 67 50 chr11 10794155 10794215 -137989257 - MIR SINE MIR -98 164 104 181 248 191 57 chr11 10794680 10794821 -137988651 + MIR SINE MIR 56 215 -47 28 61 0 0 chr11 10795172 10795221 -137988251 + AT_rich Low_complexity Low_complexity 1 49 0 671 168 55 45 chr11 10795331 10795363 -137988109 + L1 LINE L1 4614 4644 -1502 2378 100 0 0 chr11 10795363 10795663 -137987809 + AluSc SINE Alu 1 300 -9 671 168 55 45 chr11 10795663 10795962 -137987510 + L1 LINE L1 4644 5202 -944 1404 173 79 11 chr11 10795965 10796231 -137987241 + AluJo SINE Alu 16 299 -13 5231 155 19 28 chr11 10796231 10796890 -137986582 + L1MD1 LINE L1 5279 5928 -314 1650 121 55 8 chr11 10796890 10797146 -137986326 - AluSx SINE Alu -44 268 1 5231 155 19 28 chr11 10797146 10797443 -137986029 + L1MD1 LINE L1 5928 6226 -16 409 201 87 27 chr11 10797502 10797651 -137985821 + L1MC5 LINE L1 7783 7940 -21 22 0 0 0 chr11 10797665 10797687 -137985785 + AT_rich Low_complexity Low_complexity 1 22 0 355 308 100 51 chr11 10797864 10798355 -137985117 + L1M4 LINE L1 4492 5006 -1140 1923 177 99 48 chr11 10798526 10799023 -137984449 + LTR64 LTR ERVK 20 541 -17 1045 171 0 0 chr11 10799068 10799232 -137984240 - AluJb SINE Alu -13 299 136 1035 121 54 0 chr11 10799342 10799491 -137983981 - LTR47A LTR ERVL -295 157 1 495 234 39 19 chr11 10799491 10799645 -137983827 + L1 LINE L1 2771 2927 -3219 539 283 67 87 chr11 10799743 10800132 -137983340 - MLT1I LTR MaLR -13 396 16 510 176 0 0 chr11 10801745 10801830 -137981642 + Charlie1a DNA MER1_type 57 141 -1314 4941 169 60 57 chr11 10801830 10802894 -137980578 + MER11C LTR ERVK 1 1067 -4 593 241 147 75 chr11 10802947 10803267 -137980205 - MLT1A1 LTR MaLR -22 343 1 * 6294 164 52 15 chr11 10803267 10804484 -137978988 + Charlie1a DNA MER1_type 193 1455 0 924 229 233 7 chr11 10805094 10805395 -137978077 + MLT1K LTR MaLR 218 586 -2 2362 89 0 16 chr11 10805666 10805979 -137977493 - AluSc SINE Alu -1 308 1 237 146 0 0 chr11 10806299 10806347 -137977125 + (TG)n Simple_repeat Simple_repeat 2 49 0 555 253 129 0 chr11 10806570 10806740 -137976732 + MIR SINE MIR 1 192 -70 543 239 100 32 chr11 10807032 10807283 -137976189 + L1ME4a LINE L1 5617 5884 -237 1664 169 14 27 chr11 10807288 10807583 -137975889 + AluJo SINE Alu 1 291 -21 25 51 0 0 chr11 10807915 10807954 -137975518 + AT_rich Low_complexity Low_complexity 1 39 0 200 339 0 0 chr11 10807988 10808053 -137975419 + MIR SINE MIR 186 250 -12 526 321 75 0 chr11 10808070 10808282 -137975190 - MIR SINE MIR -22 240 13 333 47 0 0 chr11 10810349 10810392 -137973080 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 301 0 12 chr11 10811223 10811306 -137972166 - MLT1K LTR MaLR -437 151 70 189 80 0 0 chr11 10812501 10812526 -137970946 + MIR SINE MIR 83 107 -101 36 23 0 0 chr11 10812594 10812637 -137970835 + AT_rich Low_complexity Low_complexity 1 43 0 464 281 118 0 chr11 10812754 10812889 -137970583 + MER117 DNA MER1_type 10 160 -37 588 269 70 70 chr11 10812978 10813320 -137970152 - MLT1I LTR MaLR -26 383 42 961 107 5 131 chr11 10813470 10813676 -137969796 + MER4B LTR ERV1 3 182 -428 246 354 15 54 chr11 10813761 10813891 -137969581 - L2 LINE L2 -12 3260 3136 * 501 242 92 172 chr11 10813888 10814617 -137968855 + L2 LINE L2 1226 1881 -1433 6964 73 45 0 chr11 10814617 10815575 -137967897 - L1PA13 LINE L1 -3 6160 5195 501 242 92 172 chr11 10815575 10815688 -137967784 + L2 LINE L2 1881 2001 -1313 204 40 0 0 chr11 10815778 10815803 -137967669 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5001 91 9 36 chr11 10815819 10816519 -137966953 + LTR8 LTR ERV1 1 681 -10 690 304 185 5 chr11 10816593 10817004 -137966468 + L2 LINE L2 2445 2929 -385 1699 210 8 20 chr11 10817130 10817530 -137965942 + L1M4 LINE L1 2380 2774 -3372 1044 131 98 61 chr11 10817531 10817625 -137965847 - LTR47A LTR ERVL 0 452 363 1844 166 3 3 chr11 10817625 10817926 -137965546 - AluJo SINE Alu -11 301 1 1044 131 98 61 chr11 10817926 10818045 -137965427 - LTR47A LTR ERVL -89 363 231 1269 171 72 24 chr11 10818163 10818219 -137965253 - L1M2c LINE L1 -4760 2089 2037 2161 136 0 0 chr11 10818219 10818514 -137964958 - AluSx SINE Alu -17 295 1 1269 171 72 24 chr11 10818514 10818609 -137964863 - L1M2c LINE L1 -4812 2037 1948 2520 48 0 13 chr11 10818609 10818921 -137964551 - AluY SINE Alu -3 308 1 1269 171 72 24 chr11 10818921 10819127 -137964345 - L1M2c LINE L1 -4901 1948 1688 1160 193 60 0 chr11 10819144 10819362 -137964110 - AluJo SINE Alu -27 285 55 1921 137 33 10 chr11 10819400 10819699 -137963773 - AluSx SINE Alu -6 306 1 304 215 93 47 chr11 10819699 10819806 -137963666 - L1ME LINE L1 -5956 114 3 8785 175 29 11 chr11 10819834 10820619 -137962853 - L1PB2 LINE L1 0 6151 5382 1687 166 53 3 chr11 10820619 10820902 -137962570 - AluJb SINE Alu -15 297 1 8785 175 29 11 chr11 10820902 10822850 -137960622 - L1PB2 LINE L1 -769 5382 3374 693 283 109 32 chr11 10822878 10823426 -137960046 - L1M4 LINE L1 -1926 4220 3641 273 180 0 33 chr11 10823500 10823561 -137959911 - MIR SINE MIR -94 168 110 838 146 0 36 chr11 10823861 10823998 -137959474 - FLAM_C SINE Alu -1 132 1 737 237 104 73 chr11 10824063 10824623 -137958849 + LTR50 LTR ERVL 1 462 -61 255 213 20 27 chr11 10824742 10824892 -137958580 + CT-rich Low_complexity Low_complexity 1 149 0 383 307 17 28 chr11 10825153 10825332 -137958140 + CT-rich Low_complexity Low_complexity 1 177 0 363 255 137 116 chr11 10825416 10825978 -137957494 + L1M2 LINE L1 791 1382 -5467 377 245 109 71 chr11 10826316 10826500 -137956972 - MIR SINE MIR -42 220 30 2029 107 4 0 chr11 10826789 10827061 -137956411 + AluSx SINE Alu 1 273 -39 1222 153 149 89 chr11 10827170 10827451 -137956021 - AluJo SINE Alu -4 298 1 213 381 53 59 chr11 10827871 10828228 -137955244 + L2 LINE L2 2866 3220 -52 529 291 27 85 chr11 10828306 10828443 -137955029 + MIR SINE MIR 20 137 -125 1881 108 52 4 chr11 10828443 10828712 -137954760 + AluSq SINE Alu 5 286 -27 529 291 27 85 chr11 10828712 10828832 -137954640 + MIR SINE MIR 137 262 0 207 334 117 20 chr11 10829141 10829304 -137954168 - MIR3 SINE MIR -14 194 2 2071 123 0 7 chr11 10830522 10830815 -137952657 + AluSx SINE Alu 1 291 -21 884 238 33 9 chr11 10830837 10831051 -137952421 - MIR SINE MIR -12 250 32 266 277 117 0 chr11 10831197 10831291 -137952181 - L2 LINE L2 -1 3312 3208 2105 125 3 13 chr11 10832021 10832325 -137951147 + AluSx SINE Alu 1 301 -11 323 137 0 0 chr11 10832473 10832524 -137950948 + Alu SINE Alu 248 298 -2 2746 141 54 21 chr11 10832769 10833181 -137950291 + L1MA9 LINE L1 5815 6247 -65 2177 123 3 0 chr11 10833181 10833483 -137949989 + AluSc SINE Alu 1 303 -6 2746 141 54 21 chr11 10833483 10833552 -137949920 + L1MA9 LINE L1 6247 6312 0 912 313 43 54 chr11 10833584 10834044 -137949428 + MLT1K LTR MaLR 132 586 -2 446 196 9 45 chr11 10834228 10834340 -137949132 + MIR SINE MIR 148 255 -7 277 204 6 204 chr11 10834804 10834895 -137948577 + MIR SINE MIR 20 62 -200 1627 156 52 7 chr11 10834895 10835188 -137948284 - AluJb SINE Alu 0 308 4 277 204 6 204 chr11 10835188 10835271 -137948201 + MIR SINE MIR 62 160 -102 821 267 112 21 chr11 10835295 10835670 -137947802 + MLT1I LTR MaLR 1 409 0 281 347 14 4 chr11 10835816 10835957 -137947515 + L1ME4a LINE L1 5455 5596 -617 581 250 96 35 chr11 10835985 10836377 -137947095 + L1ME4a LINE L1 5689 6119 -2 214 170 43 0 chr11 10836408 10836471 -137947001 + (CAGAGA)n Simple_repeat Simple_repeat 1 65 0 1465 208 36 0 chr11 10836727 10837035 -137946437 + MER33 DNA MER1_type 6 324 0 2598 132 54 12 chr11 10837815 10838224 -137945248 + MSTB LTR MaLR 1 426 0 10065 178 21 2 chr11 10838224 10839844 -137943628 + MSTB-int LTR MaLR 1 1651 0 2302 136 39 13 chr11 10839844 10840233 -137943239 + MSTB LTR MaLR 1 399 -27 1286 161 28 0 chr11 10840259 10840470 -137943002 - AluJo SINE Alu -11 301 85 247 105 79 0 chr11 10840471 10840509 -137942963 + MSTB LTR MaLR 386 426 0 2261 107 10 0 chr11 10840565 10840864 -137942608 + AluSx SINE Alu 1 302 -10 232 171 0 100 chr11 10840871 10840941 -137942531 + L1ME4a LINE L1 5369 5431 -690 877 266 119 16 chr11 10841057 10841436 -137942036 + L1ME4a LINE L1 5493 5910 -211 1935 173 73 67 chr11 10841617 10842033 -137941439 + MLT1D LTR MaLR 24 445 -60 1983 149 10 10 chr11 10842033 10842328 -137941144 + AluJb SINE Alu 1 295 -17 1935 173 73 67 chr11 10842328 10842390 -137941082 + MLT1D LTR MaLR 445 505 0 453 19 0 0 chr11 10843031 10843085 -137940387 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 267 0 12 chr11 10843264 10843350 -137940122 + GA-rich Low_complexity Low_complexity 4 88 0 2454 232 65 65 chr11 10844105 10844880 -137938592 - MER21B LTR ERV1 -70 793 19 448 194 9 83 chr11 10844878 10844986 -137938486 - MER21B LTR ERV1 -757 106 7 * 201 74 0 0 chr11 10845086 10845113 -137938359 + (TC)n Simple_repeat Simple_repeat 1 27 0 279 200 31 15 chr11 10845233 10845298 -137938174 - MLT1K LTR MaLR -342 246 181 945 254 88 3 chr11 10845411 10845694 -137937778 - MER46C DNA MER2_type -22 316 10 590 209 23 25 chr11 10845755 10845902 -137937570 + MER5A DNA MER1_type 4 133 -45 2431 89 0 0 chr11 10846260 10846564 -137936908 + AluSq SINE Alu 1 304 -9 2324 164 42 22 chr11 10847483 10847831 -137935641 + MLT1C LTR MaLR 1 362 -105 3193 122 106 76 chr11 10847831 10848447 -137935025 - MER51A LTR ERV1 0 634 1 2324 164 42 22 chr11 10848447 10848556 -137934916 + MLT1C LTR MaLR 362 467 0 422 329 122 18 chr11 10848861 10849189 -137934283 + L2 LINE L2 2373 2734 -580 253 345 12 12 chr11 10849489 10849573 -137933899 - L2 LINE L2 -22 3291 3208 * 443 308 207 53 chr11 10849560 10849826 -137933646 + L2 LINE L2 2965 3271 -1 729 281 60 50 chr11 10850631 10851194 -137932278 + L1MC4 LINE L1 7317 8016 -26 880 185 11 34 chr11 10851237 10851415 -137932057 + FRAM SINE Alu 1 173 -3 2407 41 45 0 chr11 10852590 10852880 -137930592 + AluY SINE Alu 1 303 -8 2135 132 3 0 chr11 10853508 10853811 -137929661 - AluSg SINE Alu -6 304 1 333 71 0 0 chr11 10854004 10854046 -137929426 + 5S rRNA rRNA 2 43 -78 1886 142 30 48 chr11 10854240 10854538 -137928934 + L1MB3 LINE L1 5846 6139 -32 4229 102 29 46 chr11 10854538 10854895 -137928577 + L1MA5A LINE L1 5616 5964 -333 2414 68 0 40 chr11 10854895 10855219 -137928253 + AluY SINE Alu 1 311 0 4229 102 29 46 chr11 10855219 10855543 -137927929 + L1MA5A LINE L1 5964 6292 -5 1886 142 30 48 chr11 10855543 10855576 -137927896 + L1MB3 LINE L1 6139 6171 0 401 258 67 8 chr11 10856066 10856186 -137927286 - MIR3 SINE MIR -72 136 10 284 244 24 55 chr11 10856420 10856547 -137926925 + GA-rich Low_complexity Low_complexity 3 125 0 217 273 45 0 chr11 10856610 10856676 -137926796 - L2 LINE L2 -4 3309 3241 1711 195 17 0 chr11 10856744 10857046 -137926426 + AluJo SINE Alu 1 307 -5 308 271 0 0 chr11 10857079 10857164 -137926308 + MIR SINE MIR 92 176 -86 486 282 14 21 chr11 10857415 10857557 -137925915 + MER5A DNA MER1_type 28 168 -21 252 247 84 84 chr11 10857580 10857758 -137925714 + L2 LINE L2 2913 3090 -182 842 161 36 12 chr11 10858844 10859012 -137924460 - MER5A DNA MER1_type 0 189 18 2220 169 111 31 chr11 10859612 10859795 -137923677 - MLT1D LTR MaLR 0 505 338 1668 164 45 14 chr11 10859795 10860081 -137923391 - AluJo SINE Alu -17 295 1 2220 169 111 31 chr11 10860081 10860346 -137923126 - MLT1D LTR MaLR -167 338 21 510 280 78 10 chr11 10860587 10860780 -137922692 - L1ME LINE L1 -301 5820 5615 345 179 36 0 chr11 10860830 10860886 -137922586 - MLT1D LTR MaLR -447 58 1 186 274 51 68 chr11 10860887 10861004 -137922468 + MIR SINE MIR 117 231 -31 204 40 0 0 chr11 10861114 10861139 -137922333 + (TG)n Simple_repeat Simple_repeat 1 25 0 458 312 29 29 chr11 10861234 10861404 -137922068 - MER5B DNA MER1_type -2 176 7 387 0 0 0 chr11 10862239 10862282 -137921190 + (CA)n Simple_repeat Simple_repeat 1 43 0 737 301 7 1 chr11 10862294 10862499 -137920973 - MIR SINE MIR -56 206 2 406 211 24 0 chr11 10862830 10862953 -137920519 + CT-rich Low_complexity Low_complexity 2 127 0 244 122 0 61 chr11 10863734 10863783 -137919689 - MIR SINE MIR -57 151 106 1803 214 52 33 chr11 10864097 10864555 -137918917 + MLT1C LTR MaLR 1 467 0 498 311 80 64 chr11 10865151 10865541 -137917931 + MLT1L LTR MaLR 159 586 -29 3123 190 25 11 chr11 10865541 10866099 -137917373 + MLT1F1 LTR MaLR 1 566 -1 498 311 80 64 chr11 10866099 10866122 -137917350 + MLT1L LTR MaLR 586 607 -8 474 115 26 0 chr11 10866661 10866739 -137916733 - L1MA5 LINE L1 -5 6295 6216 274 339 197 0 chr11 10867434 10867561 -137915911 + L2 LINE L2 3112 3263 -9 639 259 7 0 chr11 10869214 10869361 -137914111 + MER5B DNA MER1_type 1 148 -30 234 235 71 35 chr11 10869302 10869387 -137914085 - MER5A DNA MER1_type -90 99 12 * 1448 230 54 48 chr11 10870102 10870580 -137912892 - HAL1 LINE L1 -6 2501 2021 33641 98 15 58 chr11 10870595 10876953 -137906519 - L1PA7 LINE L1 -67 6087 12 801 264 129 25 chr11 10876968 10877331 -137906141 - HAL1 LINE L1 -475 2032 1632 1053 275 62 10 chr11 10877343 10877634 -137905838 - MER45C DNA AcHobo -647 306 1 372 274 119 79 chr11 10877718 10877992 -137905480 + L1M2 LINE L1 4972 5233 -1079 1890 157 7 3 chr11 10877992 10878279 -137905193 + AluJo SINE Alu 1 288 -24 372 274 119 79 chr11 10878279 10878826 -137904646 + L1M2 LINE L1 5233 5825 -487 2017 132 184 11 chr11 10878843 10879207 -137904265 + MSTA LTR MaLR 1 427 -1 2685 121 2 48 chr11 10879210 10879647 -137903825 + MSTA-int LTR MaLR 3 419 -1161 1007 185 0 0 chr11 10879673 10879830 -137903642 + FRAM SINE Alu 1 153 -23 249 246 109 9 chr11 10879836 10879946 -137903526 + L1M4 LINE L1 5249 5369 -777 6945 145 21 29 chr11 10879975 10881138 -137902334 + MSTA-int LTR MaLR 427 1580 0 2092 128 177 11 chr11 10881138 10881505 -137901967 + MSTA LTR MaLR 1 428 0 5419 247 80 26 chr11 10882326 10883922 -137899550 + L1M3c LINE L1 1359 2968 -4528 * 8661 230 85 13 chr11 10883906 10886601 -137896871 + L1M3c LINE L1 2871 5369 -2196 2221 105 0 13 chr11 10886601 10886905 -137896567 + AluSq SINE Alu 1 300 -13 8661 230 85 13 chr11 10886905 10887092 -137896380 + L1M3c LINE L1 5369 5541 -2024 1801 181 0 25 chr11 10887092 10887406 -137896066 + AluJb SINE Alu 1 306 -6 8661 230 85 13 chr11 10887406 10887681 -137895791 + L1M3c LINE L1 5541 5795 -1770 180 0 0 0 chr11 10887681 10887701 -137895771 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8661 230 85 13 chr11 10887701 10887835 -137895637 + L1M3c LINE L1 5795 6591 -974 354 45 0 0 chr11 10888681 10888725 -137894747 + (GA)n Simple_repeat Simple_repeat 1 44 0 1020 210 48 24 chr11 10889389 10889637 -137893835 - MIR SINE MIR -7 255 2 324 250 169 29 chr11 10889644 10889780 -137893692 - MIR3 SINE MIR -31 177 23 517 304 78 11 chr11 10890359 10890550 -137892922 - MIR SINE MIR -10 252 49 225 280 0 0 chr11 10890678 10890728 -137892744 + (CATA)n Simple_repeat Simple_repeat 3 52 0 526 339 38 29 chr11 10890750 10890989 -137892483 - MIR SINE MIR 0 262 22 287 354 23 0 chr11 10891099 10891229 -137892243 + L2 LINE L2 2921 3053 -219 482 185 0 0 chr11 10891371 10891452 -137892020 - LTR40a LTR ERVL -7 512 432 180 338 0 0 chr11 10891474 10891542 -137891930 + L2 LINE L2 3203 3270 -2 613 243 37 0 chr11 10891764 10891900 -137891572 + FLAM_A SINE Alu 1 141 -1 256 250 0 44 chr11 10891903 10891971 -137891501 + G-rich Low_complexity Low_complexity 4 68 0 303 229 98 16 chr11 10892017 10892139 -137891333 - FRAM SINE Alu -29 137 6 26 50 0 0 chr11 10892399 10892439 -137891033 + AT_rich Low_complexity Low_complexity 1 40 0 546 281 25 12 chr11 10892629 10892789 -137890683 - MER20B DNA MER1_type -621 162 1 1837 33 0 24 chr11 10892793 10893006 -137890466 + L1PA3 LINE L1 5948 6155 0 3263 190 52 50 chr11 10893142 10893946 -137889526 - L1MD2 LINE L1 -1 6358 5553 2459 68 0 3 chr11 10893971 10894280 -137889192 - AluY SINE Alu -3 308 1 1402 174 39 12 chr11 10894281 10894539 -137888933 - L1MC/D LINE L1 -425 5817 5553 614 234 30 41 chr11 10894556 10894753 -137888719 - L1MC/D LINE L1 -816 5330 5136 25429 87 8 21 chr11 10894853 10898437 -137885035 - L1P LINE L1 -2004 4142 606 460 209 48 0 chr11 10898438 10898543 -137884929 - L1 LINE L1 -813 5333 5224 270 316 13 0 chr11 10898839 10898918 -137884554 - L2 LINE L2 -217 3055 2976 186 256 0 0 chr11 10899053 10899096 -137884376 + L3 LINE CR1 1112 1154 -423 597 245 92 22 chr11 10899667 10899851 -137883621 + Charlie8 DNA MER1_type 306 502 -1915 27 29 0 0 chr11 10900755 10900789 -137882683 + AT_rich Low_complexity Low_complexity 1 34 0 623 252 124 18 chr11 10902540 10902766 -137880706 + MIR SINE MIR 13 262 0 1945 236 35 27 chr11 10904270 10904757 -137878715 + MLT1D LTR MaLR 1 491 -14 3363 195 75 10 chr11 10905401 10906189 -137877283 - L1MC4 LINE L1 0 8042 7204 1308 159 49 4 chr11 10906190 10906598 -137876874 - LTR54 LTR ERV1 0 510 2 1449 209 62 57 chr11 10906599 10906779 -137876693 - L1MC4 LINE L1 -838 7204 7026 2357 99 10 0 chr11 10906779 10907081 -137876391 - AluSq SINE Alu -8 305 1 1449 209 62 57 chr11 10907081 10907324 -137876148 - L1MC4 LINE L1 -1016 7026 6703 1068 153 45 0 chr11 10907326 10907503 -137875969 + AluJo SINE Alu 1 185 -127 518 88 0 0 chr11 10907509 10907577 -137875895 + AluS SINE Alu 23 90 -222 3183 202 39 14 chr11 10907583 10908281 -137875191 - L1MC4a LINE L1 -1779 6029 5315 619 230 0 43 chr11 10908289 10908428 -137875044 - FLAM_A SINE Alu 0 133 1 2304 82 3 7 chr11 10908477 10908771 -137874701 - AluY SINE Alu -18 293 1 219 279 96 39 chr11 10909514 10909618 -137873854 + L2 LINE L2 3150 3259 -13 583 298 47 62 chr11 10909631 10910052 -137873420 - L2 LINE L2 -40 3232 2806 430 302 95 0 chr11 10910052 10910231 -137873241 + MER91A DNA MER1_type 1 196 0 583 298 47 62 chr11 10910231 10910276 -137873196 - L2 LINE L2 -466 2806 2770 844 185 26 32 chr11 10910276 10910465 -137873007 - MER5A DNA MER1_type 0 189 2 583 298 47 62 chr11 10910465 10910498 -137872974 - L2 LINE L2 -502 2770 2738 198 0 0 0 chr11 10910944 10910966 -137872506 + (TG)n Simple_repeat Simple_repeat 2 23 0 964 85 0 14 chr11 10911226 10911367 -137872105 - MER85 DNA T2_type 0 139 1 250 197 79 13 chr11 10912572 10912648 -137870824 + MIR SINE MIR 105 185 -77 700 232 40 15 chr11 10913344 10913542 -137869930 + L1ME3A LINE L1 3 205 -5914 342 0 0 0 chr11 10913545 10913583 -137869889 + (TG)n Simple_repeat Simple_repeat 2 39 0 383 288 37 42 chr11 10913686 10913877 -137869595 + L1ME3A LINE L1 682 871 -5248 1739 107 37 0 chr11 10914002 10914245 -137869227 - AluSc SINE Alu -57 252 1 530 210 64 13 chr11 10914247 10914404 -137869068 + L1ME3A LINE L1 903 1067 -5052 204 97 0 0 chr11 10914407 10914438 -137869034 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 271 0 0 chr11 10914482 10914530 -137868942 + (TG)n Simple_repeat Simple_repeat 1 48 0 650 311 102 44 chr11 10914538 10915505 -137867967 + L1ME3A LINE L1 1131 1746 -744 2386 94 0 3 chr11 10915512 10915819 -137867653 + AluSx SINE Alu 1 306 -6 1010 276 104 42 chr11 10915914 10916872 -137866600 + L1ME3A LINE L1 2237 3254 -2875 1187 268 136 35 chr11 10917023 10917479 -137865993 - REP3 LTR ERV -47 515 14 1029 140 6 0 chr11 10917479 10917650 -137865822 - L1P LINE L1 -1733 4413 4242 226 174 0 0 chr11 10917647 10917693 -137865779 + L1P LINE L1 4803 4848 -1298 * 538 279 124 21 chr11 10917781 10918201 -137865271 + L1ME3A LINE L1 4742 5204 -925 292 272 95 17 chr11 10918226 10918501 -137864971 + L1ME3A LINE L1 5240 5592 -543 1398 218 122 26 chr11 10918504 10918971 -137864501 - LTR33 LTR ERVL 0 521 10 584 299 26 29 chr11 10918995 10919303 -137864169 + L1ME3A LINE L1 5606 5912 -241 22 0 0 0 chr11 10919442 10919464 -137864008 + AT_rich Low_complexity Low_complexity 1 22 0 239 252 36 18 chr11 10919473 10919584 -137863888 + L1MC4 LINE L1 7929 8041 -1 810 244 119 5 chr11 10919672 10919873 -137863599 - MER58A DNA MER1_type 0 224 1 2275 103 0 31 chr11 10919926 10920247 -137863225 - AluSx SINE Alu -1 311 1 230 211 35 18 chr11 10920707 10920764 -137862708 - MLT1G1 LTR MaLR 0 595 538 222 200 0 20 chr11 10921062 10921112 -137862360 + MIR SINE MIR 192 240 -22 439 200 0 12 chr11 10921151 10921231 -137862241 + AluJ/FLAM SINE Alu 4 82 -230 266 158 73 37 chr11 10921679 10921761 -137861711 + (CTGGGG)n Simple_repeat Simple_repeat 5 89 0 931 218 49 0 chr11 10921942 10922167 -137861305 - MIR SINE MIR -11 251 16 387 252 149 7 chr11 10922194 10922346 -137861126 - MIR3 SINE MIR -31 177 4 880 289 42 60 chr11 10923125 10923627 -137859845 + L3 LINE CR1 822 1314 -263 221 312 38 37 chr11 10923629 10923777 -137859695 + MIR SINE MIR 4 153 -83 1867 232 131 77 chr11 10925139 10926458 -137857014 - L1MC5 LINE L1 -398 7957 6525 598 283 48 54 chr11 10926579 10926915 -137856557 - LTR16C LTR ERVL 0 491 158 1646 266 42 24 chr11 10927175 10927724 -137855748 - L1MC5 LINE L1 -1871 6331 5773 595 276 39 6 chr11 10928013 10928194 -137855278 - MIR SINE MIR -71 191 5 230 335 116 6 chr11 10928772 10928945 -137854527 + MIR SINE MIR 56 247 -15 2791 133 22 27 chr11 10930506 10931105 -137852367 - MER4E LTR ERV1 0 766 1 331 280 75 94 chr11 10931371 10931785 -137851687 - L2 LINE L2 -38 3234 2829 965 203 112 0 chr11 10931950 10932147 -137851325 + MER58A DNA MER1_type 1 219 -5 288 297 102 0 chr11 10932887 10933005 -137850467 - L3 LINE CR1 -268 1309 1180 8330 213 47 38 chr11 10933645 10936133 -137847339 - L1MC5 LINE L1 -1147 5393 2929 2363 92 3 0 chr11 10936133 10936436 -137847036 - AluSq SINE Alu -9 304 1 8330 213 47 38 chr11 10936436 10937311 -137846161 - L1MC5 LINE L1 -3611 2929 2063 798 167 8 0 chr11 10937311 10937443 -137846029 + FLAM_C SINE Alu 1 133 0 8330 213 47 38 chr11 10937443 10937853 -137845619 - L1MC5 LINE L1 -4477 2063 1658 2404 95 0 7 chr11 10937853 10938158 -137845314 - AluY SINE Alu -8 303 1 8330 213 47 38 chr11 10938158 10939069 -137844403 - L1MC5 LINE L1 -4882 1658 664 2507 167 142 2 chr11 10939089 10939539 -137843933 + MLT2B2 LTR ERVL 1 513 -2 2196 209 12 39 chr11 10939540 10940027 -137843445 - L1MC5 LINE L1 -6059 481 8 13639 113 56 37 chr11 10941003 10942123 -137841349 + Tigger1 DNA MER2_type 6 1103 -1315 1786 136 73 3 chr11 10942123 10942453 -137841019 + L1MA5 LINE L1 5948 6300 0 13639 113 56 37 chr11 10942453 10942751 -137840721 + Tigger1 DNA MER2_type 1103 1394 -1024 1522 107 236 8 chr11 10942751 10942993 -137840479 - AluSp SINE Alu -14 299 3 13639 113 56 37 chr11 10942993 10943777 -137839695 + Tigger1 DNA MER2_type 1394 2251 -167 981 182 12 0 chr11 10943814 10943979 -137839493 - FRAM SINE Alu -12 164 1 1288 152 0 5 chr11 10943980 10944177 -137839295 + Tigger1 DNA MER2_type 2221 2416 -2 314 224 95 43 chr11 10944422 10944538 -137838934 + MLT2F LTR ERVL 39 160 -503 1630 180 131 13 chr11 10944888 10945101 -137838371 - MLT1C LTR MaLR -34 415 228 213 108 0 0 chr11 10945101 10945138 -137838334 + (TG)n Simple_repeat Simple_repeat 2 38 0 1630 180 131 13 chr11 10945138 10945312 -137838160 - MLT1C LTR MaLR -221 228 1 199 304 167 11 chr11 10945312 10945588 -137837884 - L2 LINE L2 -988 2326 2008 474 237 106 85 chr11 10947081 10947364 -137836108 - LTR16A LTR ERVL -99 351 63 1317 197 66 71 chr11 10947387 10947767 -137835705 + MLT1B LTR MaLR 2 379 -11 393 39 0 0 chr11 10947857 10947908 -137835564 + (TC)n Simple_repeat Simple_repeat 1 51 0 281 340 10 0 chr11 10948017 10948120 -137835352 - MLT1K LTR MaLR -324 264 161 1782 173 0 23 chr11 10948248 10948549 -137834923 + AluJo SINE Alu 1 294 -18 372 261 147 25 chr11 10948557 10948714 -137834758 + MIR SINE MIR 73 248 -14 279 228 38 0 chr11 10948870 10948949 -137834523 - MIR SINE MIR -120 142 61 229 364 70 7 chr11 10949804 10949947 -137833525 + MIR SINE MIR 18 169 -93 1037 241 24 16 chr11 10950173 10950493 -137832979 + L1ME3 LINE L1 5851 6183 -1 207 245 19 0 chr11 10950530 10950583 -137832889 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1233 153 39 39 chr11 10950732 10950961 -137832511 - MER2 DNA MER2_type -113 232 4 360 0 0 0 chr11 10950964 10951004 -137832468 + (TG)n Simple_repeat Simple_repeat 1 40 0 1296 234 124 30 chr11 10951035 10951509 -137831963 + MLT1F1 LTR MaLR 49 567 0 252 247 118 21 chr11 10951509 10951602 -137831870 + MLT1F-int LTR MaLR 1 102 -1269 6773 151 35 42 chr11 10951633 10952884 -137830588 - Ricksha_b DNA DNA 0 1254 13 806 259 17 44 chr11 10952911 10952983 -137830489 + MLT1F-int LTR MaLR 293 365 -1006 1417 209 23 67 chr11 10952983 10953198 -137830274 - MLT1A2 LTR MaLR -4 370 178 2114 136 13 3 chr11 10953198 10953506 -137829966 - AluJb SINE Alu -1 311 1 1417 209 23 67 chr11 10953506 10953677 -137829795 - MLT1A2 LTR MaLR -196 178 1 806 259 17 44 chr11 10953677 10953898 -137829574 + MLT1F-int LTR MaLR 365 578 -793 713 124 0 0 chr11 10954343 10954448 -137829024 + AluSp/q SINE Alu 207 311 -2 596 282 30 101 chr11 10954559 10954995 -137828477 + MLT1F-int LTR MaLR 961 1365 -6 2237 176 79 30 chr11 10955011 10955506 -137827966 + MLT1F LTR MaLR 24 542 0 2246 90 3 30 chr11 10955994 10956294 -137827178 + AluSg SINE Alu 1 292 -18 236 255 53 21 chr11 10956507 10956601 -137826871 + MIR3 SINE MIR 109 205 -3 2366 167 64 52 chr11 10957112 10957626 -137825846 - MLT2B1 LTR ERVL 0 520 1 235 267 171 0 chr11 10959597 10959702 -137823770 + MIR3 SINE MIR 14 136 -72 32 0 0 0 chr11 10959811 10959843 -137823629 + AT_rich Low_complexity Low_complexity 1 32 0 5114 128 16 37 chr11 10960017 10960114 -137823358 + L1MA9 LINE L1 5428 5526 -786 2079 130 0 17 chr11 10960114 10960413 -137823059 - AluSx SINE Alu -18 294 1 5114 128 16 37 chr11 10960413 10960684 -137822788 + L1MA9 LINE L1 5526 5801 -511 7295 123 38 22 chr11 10960684 10961602 -137821870 - Tigger3b DNA MER2_type -1797 1231 288 2376 96 0 6 chr11 10961602 10961915 -137821557 + AluSx SINE Alu 1 311 -1 7295 123 38 22 chr11 10961915 10962208 -137821264 - Tigger3b DNA MER2_type -2740 288 1 186 103 0 0 chr11 10962211 10962240 -137821232 + (CA)n Simple_repeat Simple_repeat 2 30 0 5114 128 16 37 chr11 10962240 10962486 -137820986 + L1MA9 LINE L1 5803 6053 -259 2506 69 3 0 chr11 10962486 10962790 -137820682 - AluSc SINE Alu -4 305 1 5114 128 16 37 chr11 10962790 10963064 -137820408 + L1MA9 LINE L1 6053 6303 -9 802 287 146 21 chr11 10963149 10963739 -137819733 - L1ME4a LINE L1 -6 6115 5447 305 318 26 20 chr11 10963891 10964042 -137819430 - MIR SINE MIR -51 211 60 306 299 37 9 chr11 10964216 10964323 -137819149 + MIR SINE MIR 19 128 -80 617 211 7 35 chr11 10965386 10965528 -137817944 - L2 LINE L2 -3 3310 3173 458 232 138 0 chr11 10965764 10965902 -137817570 - MIR SINE MIR -29 233 77 288 309 62 31 chr11 10966756 10966950 -137816522 - MIR SINE MIR -56 206 7 2335 161 108 68 chr11 10967211 10967756 -137815716 - MLT1F1 LTR MaLR 0 567 1 192 208 21 0 chr11 10969301 10969349 -137814123 + L2 LINE L2 3265 3313 0 496 160 26 0 chr11 10969506 10969663 -137813809 + CT-rich Low_complexity Low_complexity 1 161 0 5917 120 11 6 chr11 10969712 10971482 -137811990 + L1PA14 LINE L1 4411 6161 0 5687 243 156 24 chr11 10971491 10972810 -137810662 - HAL1 LINE L1 -5 2502 1359 2281 58 24 7 chr11 10972810 10973104 -137810368 - AluY SINE Alu -12 299 1 5687 243 156 24 chr11 10973104 10973899 -137809573 - HAL1 LINE L1 -1148 1359 108 389 280 101 32 chr11 10974295 10974484 -137808988 + MIR SINE MIR 5 206 -56 696 229 124 14 chr11 10974503 10974713 -137808759 + MIR SINE MIR 1 233 -29 684 238 99 0 chr11 10974737 10974939 -137808533 + MIR SINE MIR 3 224 -38 272 246 15 23 chr11 10974977 10975107 -137808365 + CT-rich Low_complexity Low_complexity 2 130 0 314 180 0 0 chr11 10975107 10975157 -137808315 - MER66B LTR ERV1 -142 344 295 221 264 0 0 chr11 10976319 10976371 -137807101 + MIR SINE MIR 100 152 -56 321 286 80 9 chr11 10976698 10976810 -137806662 - L2 LINE L2 -39 3233 3114 479 259 62 16 chr11 10976927 10977129 -137806343 + MLT1J LTR MaLR 62 285 -165 287 141 16 0 chr11 10977460 10977524 -137805948 + (TG)n Simple_repeat Simple_repeat 1 65 0 193 361 64 48 chr11 10977533 10977890 -137805582 - L2 LINE L2 -415 2899 2537 592 142 94 9 chr11 10978012 10978149 -137805323 + FLAM_A SINE Alu 4 149 0 791 241 62 18 chr11 10978201 10978425 -137805047 - MIR SINE MIR -21 241 8 272 314 35 12 chr11 10978755 10978841 -137804631 - MIR SINE MIR -162 100 13 222 111 16 32 chr11 10979376 10979439 -137804033 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2169 124 15 21 chr11 10979648 10979987 -137803485 + MER1B DNA MER1_type 1 337 0 984 267 65 49 chr11 10980238 10980763 -137802709 + L2 LINE L2 2789 3313 0 367 314 59 8 chr11 10981874 10981992 -137801480 - MIR SINE MIR -133 129 6 1519 190 100 67 chr11 10982251 10982672 -137800800 - LTR41 LTR ERVL -2 771 337 493 175 0 105 chr11 10982748 10982862 -137800610 - LTR41 LTR ERVL -594 179 78 489 162 0 0 chr11 10982880 10982954 -137800518 - AluJ/FLAM SINE Alu -237 75 2 269 148 74 19 chr11 10982998 10983052 -137800420 - LTR41 LTR ERVL -716 57 1 1722 290 87 52 chr11 10983186 10983268 -137800204 - L1MEd LINE L1 -4862 1257 1179 1928 164 7 7 chr11 10983268 10983573 -137799899 - AluSx SINE Alu -7 305 1 1722 290 87 52 chr11 10983573 10983591 -137799881 - L1MEd LINE L1 -4940 1179 1163 2154 101 40 0 chr11 10983591 10983888 -137799584 - AluSp SINE Alu -4 309 1 1722 290 87 52 chr11 10983888 10985108 -137798364 - L1MEd LINE L1 -4956 1163 1 242 289 0 93 chr11 10985194 10985291 -137798181 - MIR3 SINE MIR -116 92 5 1138 223 113 11 chr11 10985389 10985663 -137797809 + AluJo SINE Alu 1 302 0 3676 55 9 0 chr11 10985666 10986123 -137797349 + L1PA7 LINE L1 5693 6153 -1 183 156 0 0 chr11 10986446 10986478 -137796994 + CT-rich Low_complexity Low_complexity 2 33 0 546 286 27 32 chr11 10986902 10987087 -137796385 + MIR SINE MIR 49 232 -30 242 226 0 0 chr11 10987953 10988006 -137795466 - HAL1 LINE L1 -1050 1457 1405 1302 210 5 0 chr11 10988035 10988259 -137795213 - MSTB LTR MaLR 0 426 202 1234 168 36 9 chr11 10988298 10988518 -137794954 - MSTB LTR MaLR -198 228 3 1467 245 33 37 chr11 10988527 10989069 -137794403 - HAL1 LINE L1 -1133 1374 835 689 113 0 75 chr11 10989118 10989222 -137794250 + Charlie5 DNA MER1_type 1 94 -2530 2298 96 0 3 chr11 10989222 10989513 -137793959 + AluSg SINE Alu 1 290 -20 689 113 0 75 chr11 10989513 10989541 -137793931 + Charlie5 DNA MER1_type 94 123 -2501 1598 150 105 3 chr11 10989544 10989897 -137793575 + Charlie5 DNA MER1_type 2236 2624 0 616 286 69 36 chr11 10990003 10990279 -137793193 - HAL1 LINE L1 -2222 285 1 211 361 47 30 chr11 10990398 10990567 -137792905 + L2 LINE L2 2686 2857 -457 242 279 3 0 chr11 10990789 10990864 -137792608 - MIR SINE MIR -62 146 74 385 257 7 73 chr11 10990946 10991082 -137792390 + L2 LINE L2 3137 3263 -9 578 275 79 31 chr11 10992124 10992353 -137791119 + MIR SINE MIR 2 241 -21 759 321 125 15 chr11 10994157 10994630 -137788842 - L3 LINE CR1 -7 1570 1046 221 310 76 33 chr11 10996325 10996509 -137786963 + L3 LINE CR1 1037 1228 -349 305 316 76 6 chr11 10997083 10997241 -137786231 - L2 LINE L2 -256 3057 2889 602 307 117 22 chr11 10997287 10997655 -137785817 + L2 LINE L2 2911 3313 0 264 180 20 0 chr11 10998434 10998484 -137784988 - MLT2F LTR ERVL 0 663 613 232 130 65 32 chr11 10998484 10998607 -137784865 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 1361 286 125 8 chr11 10998629 10999157 -137784315 - MLT2F LTR ERVL -44 619 30 227 240 0 13 chr11 11001708 11001783 -137781689 - L1MCa LINE L1 -4347 2079 2006 225 0 0 0 chr11 11001786 11001811 -137781661 + (CA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr11 11001810 11001834 -137781638 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 259 293 67 125 chr11 11001986 11002175 -137781297 + L2 LINE L2 2824 3022 -250 1722 146 44 14 chr11 11002175 11002469 -137781003 - AluJo SINE Alu -1 311 9 259 293 67 125 chr11 11002469 11002744 -137780728 + L2 LINE L2 3022 3261 -11 557 274 70 75 chr11 11003514 11003872 -137779600 + L2 LINE L2 2958 3313 0 338 324 84 0 chr11 11004975 11005117 -137778355 + MIR SINE MIR 40 193 -69 278 362 13 34 chr11 11005582 11005731 -137777741 + MER5A DNA MER1_type 44 189 0 203 161 0 0 chr11 11006196 11006227 -137777245 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 200 0 0 chr11 11006277 11006312 -137777160 + L2 LINE L2 3222 3256 -16 334 292 174 0 chr11 11007052 11007196 -137776276 - L3 LINE CR1 -177 1400 1232 1450 209 165 8 chr11 11007198 11007567 -137775905 + MLT1C LTR MaLR 4 430 -37 569 320 221 27 chr11 11007591 11008138 -137775334 - L3 LINE CR1 -357 1220 568 407 298 61 0 chr11 11008140 11008254 -137775218 - L2 LINE L2 0 3272 3152 644 254 26 24 chr11 11009081 11009378 -137774094 + MER93b LTR ERV1 3 353 -20 275 343 71 91 chr11 11009945 11010254 -137773218 + L2 LINE L2 2969 3271 -1 424 232 261 0 chr11 11010277 11010419 -137773053 - MIR SINE MIR -10 252 74 23 68 0 0 chr11 11010495 11010539 -137772933 + AT_rich Low_complexity Low_complexity 1 44 0 1040 232 84 66 chr11 11010641 11011068 -137772404 - LTR37B LTR ERV1 -5 463 29 348 201 96 113 chr11 11011412 11011651 -137771821 - L1MC5 LINE L1 -145 7816 7582 314 349 9 0 chr11 11011661 11011770 -137771702 - L2 LINE L2 -16 3297 3188 706 309 51 0 chr11 11012203 11012420 -137771052 - L3 LINE CR1 -745 832 605 279 0 0 0 chr11 11012503 11012534 -137770938 + (TG)n Simple_repeat Simple_repeat 1 31 0 464 398 36 4 chr11 11012765 11013044 -137770428 - L3 LINE CR1 -1001 576 289 356 300 27 47 chr11 11013494 11013644 -137769828 - MIR3 SINE MIR -23 185 39 264 77 0 0 chr11 11013875 11013914 -137769558 + (CATCC)n Simple_repeat Simple_repeat 5 43 0 859 217 10 44 chr11 11013996 11014077 -137769395 + MER58A DNA MER1_type 29 111 -2309 2918 68 6 0 chr11 11014077 11014429 -137769043 + THE1A LTR MaLR 1 354 -1 859 217 10 44 chr11 11014429 11014550 -137768922 + MER58A DNA MER1_type 111 224 0 2652 105 32 32 chr11 11015553 11015886 -137767586 + LTR23 LTR ERV1 1 336 -101 2095 168 111 137 chr11 11015886 11016632 -137766840 + LTR8A LTR ERV1 1 727 0 2652 105 32 32 chr11 11016632 11016735 -137766737 + LTR23 LTR ERV1 335 437 0 376 232 21 32 chr11 11016743 11016838 -137766634 - MIR SINE MIR 0 262 169 203 138 0 0 chr11 11017310 11017339 -137766133 + (CA)n Simple_repeat Simple_repeat 1 29 0 414 347 16 0 chr11 11017392 11017513 -137765959 - L2 LINE L2 -4 3268 3146 1778 84 0 4 chr11 11017624 11017851 -137765621 + AluY SINE Alu 86 311 0 2246 89 0 25 chr11 11017862 11018177 -137765295 + AluSc SINE Alu 1 307 -2 1339 157 62 7 chr11 11018205 11018479 -137764993 - MER33 DNA MER1_type -27 297 9 394 234 194 34 chr11 11018490 11018786 -137764686 - L2 LINE L2 -207 3065 2736 314 291 68 8 chr11 11019509 11019626 -137763846 + L3 LINE CR1 1312 1435 -142 487 223 66 0 chr11 11020936 11021057 -137762415 - MER103 DNA DNA -17 149 21 610 276 168 0 chr11 11021758 11021954 -137761518 + MIR SINE MIR 33 261 -1 1984 159 51 38 chr11 11021957 11022327 -137761145 - THE1C LTR MaLR 0 375 1 259 296 10 20 chr11 11022556 11022654 -137760818 + MIR SINE MIR 156 252 -10 2489 139 28 14 chr11 11022815 11023174 -137760298 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr11 11023178 11023201 -137760271 + AT_rich Low_complexity Low_complexity 1 23 0 632 246 27 44 chr11 11023777 11023960 -137759512 - MER117 DNA MER1_type 0 197 18 2239 170 88 55 chr11 11024165 11024727 -137758745 - LTR49 LTR ERV1 -15 638 2 14558 154 43 70 chr11 11024735 11027999 -137755473 - LTR49-int LTR ERV1 -3 6328 3154 472 139 139 90 chr11 11028008 11028152 -137755320 - LTR49-int LTR ERV1 -2317 4014 3864 3030 163 27 48 chr11 11028193 11028863 -137754609 - LTR49-int LTR ERV1 -3188 3143 1259 573 157 58 16 chr11 11028863 11028984 -137754488 - LTR49 LTR ERV1 -469 126 1 942 427 19 33 chr11 11029136 11029499 -137753973 + MLT1A2 LTR MaLR 1 358 -16 518 220 60 48 chr11 11029641 11029809 -137753663 + MIR SINE MIR 72 241 -21 184 370 113 35 chr11 11029893 11030096 -137753376 - L2 LINE L2 -236 3036 2818 1986 209 21 24 chr11 11030364 11030785 -137752687 + MER66B LTR ERV1 1 420 -66 24 0 0 0 chr11 11030885 11030909 -137752563 + AT_rich Low_complexity Low_complexity 1 24 0 603 118 0 0 chr11 11030995 11031088 -137752384 + AluSg/x SINE Alu 218 310 0 2376 112 0 0 chr11 11032314 11032626 -137750846 - AluSx SINE Alu 0 312 1 207 0 0 0 chr11 11033821 11033844 -137749628 + (T)n Simple_repeat Simple_repeat 1 23 0 307 73 0 0 chr11 11033894 11033935 -137749537 + L1PBa LINE L1 1741 1781 -5082 551 247 174 26 chr11 11034238 11034623 -137748849 - L1MEc LINE L1 -2884 3331 2890 322 211 33 11 chr11 11034735 11034825 -137748647 + MER66B LTR ERV1 395 486 0 2741 198 19 101 chr11 11034869 11035622 -137747850 + LTR8 LTR ERV1 1 691 0 5321 97 3 20 chr11 11035752 11036455 -137747017 + LTR8 LTR ERV1 1 691 0 586 204 167 19 chr11 11036739 11036901 -137746571 - MER5A DNA MER1_type 0 189 4 5187 161 42 8 chr11 11037715 11038850 -137744622 - L1MB2 LINE L1 -2 6169 4994 703 303 25 29 chr11 11039144 11039388 -137744084 + MIR SINE MIR 19 261 -1 319 230 27 0 chr11 11039408 11039482 -137743990 - MLT1E LTR MaLR 0 593 518 6607 197 29 20 chr11 11039482 11040992 -137742480 + L1M4 LINE L1 3841 5362 -784 485 76 30 0 chr11 11040988 11041054 -137742418 + L1MB8 LINE L1 6070 6137 -41 * 189 0 0 0 chr11 11041075 11041096 -137742376 + (CA)n Simple_repeat Simple_repeat 2 22 0 775 243 123 22 chr11 11041096 11041491 -137741981 - MLT1E LTR MaLR -64 529 1 408 256 48 24 chr11 11041721 11041846 -137741626 - MIR SINE MIR -130 132 5 184 380 14 0 chr11 11041950 11042021 -137741451 - L2 LINE L2 -18 3254 3183 824 251 104 25 chr11 11042064 11042448 -137741024 - L1MEc LINE L1 -3655 2560 2168 1973 142 130 24 chr11 11042448 11042787 -137740685 + THE1C LTR MaLR 1 375 0 824 251 104 25 chr11 11042787 11042876 -137740596 - L1MEc LINE L1 -4047 2168 2087 1729 192 29 35 chr11 11043121 11043465 -137740007 + MER2 DNA MER2_type 2 343 -1 351 235 152 23 chr11 11043471 11043688 -137739784 - L1MEc LINE L1 -5112 1093 849 2543 54 0 0 chr11 11043691 11043989 -137739483 - AluY SINE Alu -13 298 1 322 109 0 0 chr11 11044015 11044061 -137739411 - L1MA9 LINE L1 -38 6274 6229 1848 133 20 51 chr11 11044061 11044415 -137739057 + THE1B LTR MaLR 1 343 -21 327 273 23 53 chr11 11047934 11048066 -137735406 + MER103 DNA DNA 38 165 -1 1047 318 75 20 chr11 11048153 11048797 -137734675 + L2 LINE L2 1835 3232 -40 2768 144 36 0 chr11 11048825 11049242 -137734230 - MSTB1 LTR MaLR 0 432 1 608 180 29 22 chr11 11049480 11049619 -137733853 + LTR41 LTR ERVL 1 140 -633 311 308 0 0 chr11 11049742 11049833 -137733639 + L2 LINE L2 2593 2683 -631 561 307 49 32 chr11 11050088 11050560 -137732912 - L1M4 LINE L1 -1567 4636 4157 3139 223 51 35 chr11 11050575 11051693 -137731779 + L1ME1 LINE L1 4930 6080 -86 210 231 0 0 chr11 11051798 11051863 -137731609 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 339 339 48 32 chr11 11051898 11052022 -137731450 - L2 LINE L2 0 3272 3147 194 167 83 21 chr11 11054908 11054956 -137728516 + MER5B DNA MER1_type 2 52 -126 1303 300 103 25 chr11 11056003 11056797 -137726675 + HAL1b LINE L1 56 911 -437 190 222 0 22 chr11 11057043 11057088 -137726384 + MIR SINE MIR 200 243 -19 1834 141 4 7 chr11 11057090 11057360 -137726112 - AluSx SINE Alu -43 269 1 221 261 6 78 chr11 11057692 11057872 -137725600 + T-rich Low_complexity Low_complexity 2 168 0 769 83 0 0 chr11 11058558 11058654 -137724818 + L1PA3 LINE L1 2 97 -6049 * 32752 40 0 6 chr11 11058653 11059899 -137723573 + L1PA3 LINE L1 600 1851 -4295 8103 27 0 4 chr11 11059899 11061254 -137722218 + L1PA3 LINE L1 4806 6152 -3 32752 40 0 6 chr11 11061254 11063956 -137719516 + L1PA3 LINE L1 1851 4526 -1620 5757 183 50 16 chr11 11064056 11066491 -137716981 - L1PBb LINE L1 -3025 3178 658 308 300 106 33 chr11 11066629 11066809 -137716663 + MIR SINE MIR 68 260 -2 268 256 11 44 chr11 11067030 11067120 -137716352 + MER102b DNA MER1_type 232 318 -23 1101 286 66 40 chr11 11067199 11068113 -137715359 + L1MC4a LINE L1 747 1715 -4595 4879 264 81 46 chr11 11068393 11068990 -137714482 + L1MC4a LINE L1 4499 5074 -2717 2417 52 35 0 chr11 11068990 11069276 -137714196 - AluY SINE Alu -14 297 2 4879 264 81 46 chr11 11069276 11071059 -137712413 + L1MC4a LINE L1 5074 6980 -811 203 88 29 0 chr11 11071059 11071093 -137712379 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 4879 264 81 46 chr11 11071093 11071322 -137712150 + L1MC4a LINE L1 6980 7200 -591 1119 240 78 35 chr11 11071449 11071933 -137711539 + L1MEd LINE L1 2231 2735 -3394 192 200 0 0 chr11 11072878 11072918 -137710554 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 236 236 56 chr11 11073583 11073778 -137709694 - L2 LINE L2 -337 2977 2748 1510 150 4 4 chr11 11073904 11074130 -137709342 - AluSx SINE Alu -86 226 1 377 325 8 16 chr11 11074130 11074256 -137709216 - L2 LINE L2 -249 3023 2899 378 283 33 25 chr11 11075650 11075770 -137707702 + L2 LINE L2 3193 3313 0 1048 239 147 21 chr11 11075815 11076196 -137707276 - LTR33 LTR ERVL -3 518 90 970 177 111 5 chr11 11076331 11076529 -137706943 + MER20 DNA MER1_type 1 219 0 304 276 69 26 chr11 11077154 11077270 -137706202 - MIR SINE MIR -77 185 65 196 222 44 0 chr11 11077515 11077560 -137705912 - L2 LINE L2 -3 3310 3264 540 232 139 0 chr11 11077662 11077813 -137705659 - MIR SINE MIR -12 250 79 1476 167 63 20 chr11 11077827 11078127 -137705345 + L1MB3 LINE L1 5828 6140 -43 2260 80 14 0 chr11 11078130 11078419 -137705053 + AluY SINE Alu 1 293 -18 550 30 0 0 chr11 11078491 11078557 -137704915 - L1PA4 LINE L1 -3 6152 6087 288 258 45 22 chr11 11078618 11078707 -137704765 + L2 LINE L2 3180 3270 -2 287 91 0 0 chr11 11078747 11078791 -137704681 + L1MB4 LINE L1 6136 6179 -1 1992 203 17 17 chr11 11078889 11079303 -137704169 - MLT2D LTR ERVL 0 414 1 2160 110 3 13 chr11 11079889 11080189 -137703283 + AluSx SINE Alu 1 297 -15 284 326 160 22 chr11 11081355 11081536 -137701936 - MIR SINE MIR -23 239 34 314 304 36 9 chr11 11082458 11082570 -137700902 + MIR SINE MIR 26 140 -122 764 187 122 75 chr11 11082894 11082986 -137700486 - MER58A DNA MER1_type -2196 224 138 2267 151 14 38 chr11 11082986 11083356 -137700116 - MLT1A1 LTR MaLR -4 361 1 764 187 122 75 chr11 11083356 11083477 -137699995 - MER58A DNA MER1_type -2282 138 1 381 173 12 12 chr11 11083618 11083699 -137699773 - L1ME3 LINE L1 -215 5947 5867 586 275 20 64 chr11 11083721 11083972 -137699500 - L1ME3 LINE L1 -403 5767 5528 1212 209 63 54 chr11 11083978 11084478 -137698994 - MER34B LTR ERV1 -6 559 5 759 265 34 32 chr11 11084488 11084955 -137698517 - L1ME3 LINE L1 -634 5528 5056 2415 165 17 40 chr11 11085663 11086068 -137697404 - MSTD LTR MaLR 0 396 1 810 249 46 10 chr11 11086714 11086911 -137696561 + MIR SINE MIR 29 232 -30 392 352 57 0 chr11 11087227 11087386 -137696086 + MIR SINE MIR 47 214 -48 954 222 236 33 chr11 11087419 11087784 -137695688 - MLT1E LTR MaLR -154 439 1 401 287 8 25 chr11 11088601 11088723 -137694749 - MIR3 SINE MIR -85 123 4 1609 188 32 0 chr11 11088747 11089029 -137694443 - AluJb SINE Alu -21 291 1 860 281 39 17 chr11 11089636 11089995 -137693477 + LTR16A LTR ERVL 84 450 0 21 36 0 0 chr11 11091854 11091882 -137691590 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr11 11092222 11092254 -137691218 + AT_rich Low_complexity Low_complexity 1 32 0 213 94 0 0 chr11 11092990 11093022 -137690450 + (TG)n Simple_repeat Simple_repeat 1 32 0 2028 163 98 21 chr11 11093355 11093773 -137689699 - MLT1D LTR MaLR 0 505 56 893 188 0 18 chr11 11093773 11093943 -137689529 + LTR28 LTR ERV1 1 167 -853 272 105 0 0 chr11 11093929 11093967 -137689505 + MER61B LTR ERV1 102 139 -286 * 298 203 16 0 chr11 11093980 11094044 -137689428 + LTR1 LTR ERV1 121 185 -600 * 1427 240 21 24 chr11 11094018 11094356 -137689116 + LTR27 LTR ERV1 299 635 -1 11052 171 11 9 chr11 11094543 11097214 -137686258 + L1PB3 LINE L1 3146 5823 -331 2091 125 0 0 chr11 11097214 11097518 -137685954 + AluSc SINE Alu 1 304 0 11052 171 11 9 chr11 11097518 11097849 -137685623 + L1PB3 LINE L1 5823 6152 -2 812 121 14 57 chr11 11099126 11099266 -137684206 + L1MA9 LINE L1 6179 6312 0 3898 132 32 10 chr11 11100152 11100737 -137682735 - MER7C DNA MER2_type 0 602 5 210 71 0 0 chr11 11101213 11101241 -137682231 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 699 204 25 46 chr11 11101340 11101536 -137681936 + LTR33 LTR ERVL 330 521 0 780 189 18 92 chr11 11101875 11102103 -137681369 + L1MD3 LINE L1 7777 7987 -8 711 292 89 57 chr11 11102413 11102852 -137680620 + MLT1L LTR MaLR 2 454 -161 282 73 0 0 chr11 11103893 11103934 -137679538 + (CAT)n Simple_repeat Simple_repeat 1 41 0 201 294 0 0 chr11 11103988 11104039 -137679433 - MIR SINE MIR -32 230 180 193 291 164 9 chr11 11104188 11104298 -137679174 - MIR SINE MIR -75 187 61 609 253 123 113 chr11 11105030 11105559 -137677913 - LTR67 LTR ERVL 0 557 24 739 295 32 14 chr11 11105598 11105883 -137677589 - L1M4 LINE L1 -2169 3977 3688 192 227 45 0 chr11 11106089 11106133 -137677339 - L2 LINE L2 -6 3266 3221 219 69 0 0 chr11 11106380 11106409 -137677063 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 269 240 272 0 chr11 11106614 11106739 -137676733 + MIR SINE MIR 3 161 -101 200 302 32 0 chr11 11106772 11106835 -137676637 - L2 LINE L2 -18 3254 3190 294 279 0 0 chr11 11107525 11107593 -137675879 + MIR SINE MIR 68 135 -73 364 303 53 0 chr11 11108232 11108364 -137675108 - MIR3 SINE MIR -27 181 43 233 365 31 50 chr11 11108879 11109101 -137674371 - L2 LINE L2 -56 3216 2999 512 241 131 76 chr11 11109105 11109342 -137674130 - MIR SINE MIR -1 261 12 671 327 38 44 chr11 11109401 11109924 -137673548 - L2 LINE L2 -411 2903 2384 460 255 167 14 chr11 11110576 11110907 -137672565 + LTR16A LTR ERVL 23 450 0 359 269 67 15 chr11 11110908 11111042 -137672430 + MLT2F LTR ERVL 1 141 -522 1118 171 136 17 chr11 11111101 11111388 -137672084 + MLT2F LTR ERVL 303 623 -40 1406 220 83 40 chr11 11112695 11113156 -137670316 + MLT1D LTR MaLR 21 387 -3 253 366 66 11 chr11 11113372 11113555 -137669917 + MIR SINE MIR 49 241 -21 946 185 21 85 chr11 11113834 11114023 -137669449 - MER45A DNA AcHobo 0 178 2 196 254 30 45 chr11 11114194 11114261 -137669211 - MIR SINE MIR -2 260 195 346 266 18 18 chr11 11114375 11114488 -137668984 - MIR SINE MIR -56 206 94 348 267 118 25 chr11 11114582 11114743 -137668729 - MIR SINE MIR -48 214 39 400 286 202 0 chr11 11115055 11115233 -137668239 + MIR SINE MIR 40 253 -9 353 350 16 0 chr11 11115532 11115655 -137667817 + MIR3 SINE MIR 32 156 -52 2238 115 0 3 chr11 11115658 11115954 -137667518 - AluSg SINE Alu -15 295 1 7995 30 2 0 chr11 11116130 11117609 -137665863 + L1PA4 LINE L1 4672 6152 -3 190 143 0 0 chr11 11118094 11118129 -137665343 + L2 LINE L2 3270 3304 -9 14806 191 26 7 chr11 11118223 11118663 -137664809 - L1P LINE L1 -1291 4855 4425 2040 142 0 16 chr11 11118663 11118980 -137664492 - AluSx SINE Alu 0 312 1 14806 191 26 7 chr11 11118980 11121543 -137661929 - L1P LINE L1 -1721 4425 1795 650 226 14 14 chr11 11121543 11121689 -137661783 - MER58 DNA MER1_type -2274 146 1 1237 145 181 68 chr11 11122623 11122948 -137660524 + THE1B LTR MaLR 1 362 -2 604 232 85 12 chr11 11123329 11123493 -137659979 + MER5B DNA MER1_type 3 178 0 2918 257 64 31 chr11 11124959 11126319 -137657153 - L1ME3A LINE L1 0 6170 4755 1209 209 93 11 chr11 11126342 11126697 -137656775 - L1ME3A LINE L1 -1505 4641 4258 1498 198 112 34 chr11 11126698 11127081 -137656391 - MLT1D LTR MaLR 0 505 93 1597 171 21 21 chr11 11127081 11127367 -137656105 + LTR32 LTR ERVL 15 300 -171 234 259 120 28 chr11 11127371 11127479 -137655993 - L1M4 LINE L1 -1228 4918 4801 497 229 97 21 chr11 11127603 11127747 -137655725 + LTR32 LTR ERVL 317 471 0 267 212 26 142 chr11 11127747 11127857 -137655615 - MLT1D LTR MaLR -408 97 1 232 265 44 0 chr11 11127858 11127926 -137655546 - L1ME3A LINE L1 -1890 4256 4186 309 310 69 48 chr11 11127934 11128079 -137655393 - MIR SINE MIR -113 149 2 369 238 38 29 chr11 11128281 11128386 -137655086 + MIR SINE MIR 40 145 -63 335 236 154 8 chr11 11128680 11128803 -137654669 - L2 LINE L2 -214 3058 2918 269 280 20 30 chr11 11129476 11129576 -137653896 + L3 LINE CR1 1277 1375 -202 336 164 66 0 chr11 11130781 11130842 -137652630 - L2 LINE L2 -12 3301 3237 * 521 347 16 5 chr11 11130830 11131020 -137652452 + L3 LINE CR1 1379 1570 -7 208 305 12 49 chr11 11131146 11131228 -137652244 - MIR SINE MIR -93 115 37 692 228 175 16 chr11 11131379 11131625 -137651847 + MER45C DNA AcHobo 1 285 -668 465 303 88 44 chr11 11131774 11132048 -137651424 + MER45C DNA AcHobo 487 772 -181 1733 162 62 3 chr11 11132179 11132487 -137650985 + MER45B DNA AcHobo 715 1040 0 454 217 17 35 chr11 11233627 11233742 -137549730 - L1ME2 LINE L1 0 6164 6052 243 281 0 0 chr11 11234240 11234304 -137549168 - MLT1D LTR MaLR -438 67 4 2297 83 0 22 chr11 11234452 11234764 -137548708 + AluSg SINE Alu 1 305 -5 352 315 94 10 chr11 11234878 11235081 -137548391 + MIR SINE MIR 41 260 -2 519 266 189 0 chr11 11235398 11235567 -137547905 + MIR SINE MIR 6 206 -56 1379 179 0 5 chr11 11238921 11239145 -137544327 + MLT1A1 LTR MaLR 143 365 0 240 233 0 0 chr11 11239145 11239188 -137544284 + Charlie8 DNA MER1_type 218 260 -2157 932 214 64 30 chr11 11239257 11239702 -137543770 - MLT1F1 LTR MaLR 0 567 1 239 276 0 26 chr11 11239705 11239781 -137543691 + MIR SINE MIR 183 256 -6 548 286 87 12 chr11 11239788 11240029 -137543443 - MIR SINE MIR -2 260 2 1307 193 78 43 chr11 11240284 11240606 -137542866 - MLT1A1 LTR MaLR -12 353 21 191 304 29 53 chr11 11240638 11240809 -137542663 + L2 LINE L2 2814 2980 -292 545 124 21 21 chr11 11241679 11241776 -137541696 + MER103 DNA DNA 25 121 -45 465 306 23 23 chr11 11242352 11242525 -137540947 - MIR SINE MIR -31 231 59 219 69 0 0 chr11 11242542 11242571 -137540901 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 3531 59 9 0 chr11 11243068 11243511 -137539961 - L1PA8 LINE L1 -19 6153 5707 224 222 100 33 chr11 11243688 11243778 -137539694 + L2 LINE L2 3168 3263 -9 377 255 20 31 chr11 11245677 11245775 -137537697 + MIR SINE MIR 36 132 -76 203 341 24 0 chr11 11245978 11246060 -137537412 - L2 LINE L2 -6 3307 3224 645 231 75 0 chr11 11246227 11246413 -137537059 - L1ME3A LINE L1 -7 6163 5964 1671 241 59 16 chr11 11247393 11247887 -137535585 + HAL1 LINE L1 1420 1934 -573 1234 226 81 59 chr11 11247994 11248499 -137534973 + LTR33A LTR ERVL 2 517 -6 446 269 102 44 chr11 11248504 11248779 -137534693 + HAL1 LINE L1 2079 2369 -138 563 268 162 0 chr11 11248884 11249063 -137534409 + MIR SINE MIR 34 241 -21 369 264 64 9 chr11 11249390 11249500 -137533972 - MIR SINE MIR -128 134 19 261 325 0 0 chr11 11250004 11250081 -137533391 - L2 LINE L2 -339 2974 2898 242 366 15 15 chr11 11251079 11251213 -137532259 + MIR SINE MIR 20 153 -109 722 257 31 62 chr11 11251227 11251453 -137532019 + MIR SINE MIR 40 258 -4 184 233 0 0 chr11 11251498 11251541 -137531931 + L2 LINE L2 3271 3313 0 729 217 32 6 chr11 11251691 11251848 -137531624 - MER63 DNA MER1_type -272 789 629 184 203 106 114 chr11 11252525 11252648 -137530824 - MER5B DNA MER1_type -56 122 1 552 196 101 34 chr11 11253299 11253447 -137530025 + MER5A DNA MER1_type 13 170 -19 609 306 107 10 chr11 11253473 11253679 -137529793 + MIR SINE MIR 5 230 -32 864 265 60 36 chr11 11253883 11254136 -137529336 - LTR16C LTR ERVL 0 491 227 2339 177 64 11 chr11 11254136 11254576 -137528896 - MLT1C LTR MaLR 0 467 5 864 265 60 36 chr11 11254576 11254658 -137528814 - LTR16C LTR ERVL -264 227 148 2680 127 16 45 chr11 11254665 11254723 -137528749 + MSTB1 LTR MaLR 1 59 -373 2564 61 0 0 chr11 11254723 11255019 -137528453 + AluY SINE Alu 1 296 -15 2680 127 16 45 chr11 11255019 11255401 -137528071 + MSTB1 LTR MaLR 59 428 -4 1421 153 39 49 chr11 11255473 11255716 -137527756 - MLT1A1 LTR MaLR 0 365 124 903 224 124 59 chr11 11255716 11256055 -137527417 + MLT1A1 LTR MaLR 1 361 -4 1421 153 39 49 chr11 11256055 11256119 -137527353 - MLT1A1 LTR MaLR -241 124 61 204 245 0 0 chr11 11256365 11256414 -137527058 + A-rich Low_complexity Low_complexity 1 49 0 199 345 12 12 chr11 11258246 11258330 -137525142 - MIR SINE MIR -133 129 46 986 336 117 26 chr11 11258721 11259364 -137524108 - L3 LINE CR1 -22 1555 855 823 263 96 82 chr11 11259630 11260233 -137523239 + L2 LINE L2 2536 3152 -161 486 0 0 0 chr11 11260233 11260287 -137523185 + (CA)n Simple_repeat Simple_repeat 2 55 0 823 263 96 82 chr11 11260287 11260452 -137523020 + L2 LINE L2 3152 3313 0 212 210 0 16 chr11 11260645 11260707 -137522765 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 29 0 0 0 chr11 11260866 11260895 -137522577 + AT_rich Low_complexity Low_complexity 1 29 0 2149 131 3 3 chr11 11261442 11261747 -137521725 + AluSx SINE Alu 1 305 -7 487 291 35 8 chr11 11263220 11263377 -137520095 + MIR SINE MIR 32 194 -65 535 189 11 105 chr11 11263399 11263589 -137519883 + MER20 DNA MER1_type 47 218 -1 251 320 90 0 chr11 11266619 11266719 -137516753 - L2 LINE L2 -4 3268 3160 227 172 299 11 chr11 11266733 11266820 -137516652 - MER81 DNA DNA -2 112 1 386 338 36 0 chr11 11266924 11267063 -137516409 - MIR3 SINE MIR -30 178 35 534 200 44 37 chr11 11267540 11267675 -137515797 - L2 LINE L2 -5 3308 3173 725 285 91 30 chr11 11268562 11268860 -137514612 + L2 LINE L2 2986 3301 -12 251 408 8 0 chr11 11269696 11269821 -137513651 + MIR SINE MIR 20 145 -63 204 328 0 0 chr11 11270112 11270173 -137513299 - L2 LINE L2 -2 3270 3210 267 214 0 0 chr11 11270990 11271060 -137512412 + (TGG)n Simple_repeat Simple_repeat 3 72 0 238 348 144 0 chr11 11271849 11271967 -137511505 + L2 LINE L2 3138 3272 0 1484 94 29 1 chr11 11272411 11272766 -137510706 - L1P4 LINE L1 -685 5481 5115 417 240 13 87 chr11 11272876 11273026 -137510446 + MIR3 SINE MIR 32 170 -38 260 292 46 31 chr11 11273047 11273177 -137510295 + MLT1J2 LTR MaLR 47 178 -231 2090 169 91 5 chr11 11273212 11273632 -137509840 + MLT1C LTR MaLR 6 461 -6 1329 232 16 27 chr11 11273738 11274104 -137509368 + LTR37B LTR ERV1 6 367 -101 384 151 161 0 chr11 11274388 11274481 -137508991 + MLT1C LTR MaLR 152 259 -208 224 382 34 0 chr11 11274513 11274602 -137508870 - L3 LINE CR1 -3 1574 1483 245 315 74 19 chr11 11274710 11274818 -137508654 - L3 LINE CR1 -321 1256 1143 673 191 85 163 chr11 11274824 11275107 -137508365 - MIR SINE MIR 0 262 2 278 269 0 0 chr11 11275254 11275306 -137508166 + MER91 DNA MER1_type 87 138 -2 458 279 125 5 chr11 11276161 11276369 -137507103 + L1ME3 LINE L1 5927 6159 -3 2296 112 0 7 chr11 11276539 11276842 -137506630 - AluSx SINE Alu -11 301 1 811 253 51 39 chr11 11277008 11277265 -137506207 - MIR SINE MIR -2 260 1 992 212 5 0 chr11 11277453 11277678 -137505794 + L1ME3A LINE L1 5356 5589 -567 1357 209 66 50 chr11 11277679 11278043 -137505429 - MLT1A2 LTR MaLR -4 370 1 2040 211 31 20 chr11 11278043 11278527 -137504945 - MLT-int LTR MaLR 0 1735 1140 359 169 45 22 chr11 11278512 11278601 -137504871 - MLT-int LTR MaLR -966 769 679 * 531 242 43 30 chr11 11278665 11278893 -137504579 - MLT1-int LTR MaLR -489 882 561 1153 196 29 57 chr11 11278893 11279174 -137504298 + MLT1A2 LTR MaLR 98 370 -4 1212 250 7 0 chr11 11279178 11279470 -137504002 + L1ME3A LINE L1 5582 5875 -295 * 1760 89 30 11 chr11 11279467 11279820 -137503652 - L1PB2 LINE L1 -619 5532 5169 4668 76 2 22 chr11 11279821 11280463 -137503009 + L1PB2 LINE L1 5521 6149 -2 23 0 0 0 chr11 11280463 11280486 -137502986 + AT_rich Low_complexity Low_complexity 1 23 0 228 299 13 0 chr11 11280486 11280563 -137502909 + L1ME3A LINE L1 5877 5954 -210 317 242 33 0 chr11 11280575 11280666 -137502806 + L1ME3A LINE L1 6077 6170 0 2533 73 0 0 chr11 11280979 11281280 -137502192 - AluY SINE Alu -10 301 1 957 215 5 20 chr11 11284293 11284493 -137498979 - MIR SINE MIR -64 198 2 207 173 0 0 chr11 11285961 11286013 -137497459 + (TG)n Simple_repeat Simple_repeat 1 52 0 340 307 102 15 chr11 11286507 11286595 -137496877 - MIR3 SINE MIR -6 202 96 2093 118 0 50 chr11 11286595 11286918 -137496554 + AluSx SINE Alu 1 307 -5 340 307 102 15 chr11 11286918 11286966 -137496506 - MIR3 SINE MIR -112 96 54 720 230 18 6 chr11 11286986 11287151 -137496321 + MER5A DNA MER1_type 5 171 -18 394 148 12 49 chr11 11288244 11288325 -137495147 - MSTB2 LTR MaLR 0 457 351 2071 193 33 51 chr11 11288919 11289433 -137494039 + MLT1D LTR MaLR 1 505 0 727 265 73 32 chr11 11290050 11290269 -137493203 + MIR SINE MIR 35 262 0 329 304 82 15 chr11 11290305 11290440 -137493032 - MIR SINE MIR -6 256 113 255 338 136 43 chr11 11290471 11290773 -137492699 + L2 LINE L2 2943 3272 0 245 212 12 82 chr11 11290954 11291039 -137492433 - MIR SINE MIR -152 110 32 394 290 131 15 chr11 11293044 11293200 -137490272 - MIR SINE MIR -61 147 3 584 245 52 62 chr11 11294391 11294583 -137488889 - MIR SINE MIR -56 206 17 2425 79 0 3 chr11 11295285 11295588 -137487884 + AluY SINE Alu 1 302 -9 243 296 56 24 chr11 11295796 11295921 -137487551 + L2 LINE L2 3143 3271 -1 297 328 156 46 chr11 11297071 11297373 -137486099 - L2 LINE L2 -25 3247 2913 2164 124 0 13 chr11 11297617 11297931 -137485541 - AluSg SINE Alu 0 310 1 410 316 128 5 chr11 11298258 11298454 -137485018 - MIR SINE MIR -10 252 33 235 259 276 0 chr11 11299656 11299772 -137483700 - MIR SINE MIR -18 244 97 812 352 54 31 chr11 11300409 11300986 -137482486 + L2 LINE L2 2247 2836 -478 241 320 67 52 chr11 11303846 11304040 -137479432 - MIR SINE MIR -18 244 48 1473 256 60 14 chr11 11304412 11304858 -137478614 + MLT1C LTR MaLR 1 467 0 873 278 40 86 chr11 11305193 11306080 -137477392 + L1MEd LINE L1 660 1545 -4765 311 253 11 11 chr11 11307854 11307949 -137475523 - LTR67 LTR ERVL -5 552 458 5453 76 10 0 chr11 11308407 11309116 -137474356 + L1PA8A LINE L1 5416 6131 0 3793 214 73 66 chr11 11309163 11310445 -137473027 - L1MC5 LINE L1 -60 7901 6591 186 43 0 0 chr11 11310445 11310468 -137473004 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3793 214 73 66 chr11 11310468 11310786 -137472686 - L1MC5 LINE L1 -1370 6591 6277 25 75 0 0 chr11 11310843 11310896 -137472576 + AT_rich Low_complexity Low_complexity 1 53 0 1932 268 83 26 chr11 11311054 11311752 -137471720 - L1MC5 LINE L1 -747 5399 5154 189 0 0 0 chr11 11311752 11311773 -137471699 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1932 268 83 26 chr11 11311773 11312215 -137471257 - L1MC5 LINE L1 -992 5154 4738 285 316 158 5 chr11 11312402 11312592 -137470880 + L3 LINE CR1 1244 1462 -115 1004 260 13 13 chr11 11312641 11312876 -137470596 - MIR SINE MIR -2 260 26 194 292 0 0 chr11 11312906 11312954 -137470518 + L3 LINE CR1 433 480 -1097 187 273 0 0 chr11 11313025 11313069 -137470403 - L2 LINE L2 -90 3182 3139 215 315 11 11 chr11 11313820 11313909 -137469563 - L2 LINE L2 -188 3084 2996 290 350 139 0 chr11 11314159 11314339 -137469133 - MIR SINE MIR -57 205 1 351 44 0 0 chr11 11315265 11315310 -137468162 + (TG)n Simple_repeat Simple_repeat 2 46 0 606 163 31 148 chr11 11316194 11316390 -137467082 + MER5B DNA MER1_type 6 178 0 356 232 0 80 chr11 11316400 11316512 -137466960 - MER5A DNA MER1_type -1 188 86 188 310 85 85 chr11 11317986 11318244 -137465228 + L2 LINE L2 3006 3263 -9 224 297 249 12 chr11 11319685 11319850 -137463622 + L2 LINE L2 3068 3271 -1 203 333 0 0 chr11 11320228 11320300 -137463172 - MIR SINE MIR -133 129 58 318 336 32 8 chr11 11321235 11321360 -137462112 - MIR SINE MIR -28 234 107 1000 181 0 0 chr11 11321382 11321548 -137461924 + FRAM SINE Alu 1 166 0 2030 134 3 0 chr11 11322319 11322624 -137460848 + AluSx SINE Alu 1 306 -6 576 341 182 0 chr11 11322710 11323190 -137460282 - L2 LINE L2 -225 3088 2508 722 208 104 20 chr11 11323765 11323967 -137459505 + MIR SINE MIR 7 225 -37 630 290 86 14 chr11 11324128 11324349 -137459123 + MIR SINE MIR 20 256 -6 1881 117 7 23 chr11 11324585 11324884 -137458588 + AluSq SINE Alu 1 294 -19 315 229 43 43 chr11 11326846 11326938 -137456534 + MIR SINE MIR 112 232 -30 278 306 54 108 chr11 11327938 11328419 -137455053 + L2 LINE L2 2818 3272 0 213 132 0 0 chr11 11328912 11328950 -137454522 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 195 328 16 0 chr11 11329461 11329525 -137453947 + MIR SINE MIR 79 143 -65 27 0 0 0 chr11 11329537 11329564 -137453908 + AT_rich Low_complexity Low_complexity 1 27 0 2072 96 3 0 chr11 11329716 11329998 -137453474 - AluSp SINE Alu -10 303 21 306 229 209 9 chr11 11330126 11330231 -137453241 - L2 LINE L2 0 3272 3147 603 275 68 25 chr11 11330440 11330676 -137452796 + LTR16C LTR ERVL 2 247 -244 190 275 0 72 chr11 11330678 11330747 -137452725 + MIR SINE MIR 117 180 -82 486 206 22 37 chr11 11330998 11331131 -137452341 - L2 LINE L2 -383 2931 2801 781 178 25 18 chr11 11331131 11331294 -137452178 + MER5B DNA MER1_type 3 166 -12 1002 259 64 0 chr11 11331307 11331573 -137451899 - L2 LINE L2 -508 2806 2524 307 247 71 11 chr11 11331979 11332080 -137451392 - MIR SINE MIR -73 135 44 733 252 80 25 chr11 11332762 11333000 -137450472 - MIR SINE MIR -10 252 2 263 292 0 28 chr11 11333653 11333725 -137449747 - L2 LINE L2 0 3272 3203 462 125 0 0 chr11 11334132 11334196 -137449276 + MLT1D LTR MaLR 4 67 -438 508 200 17 35 chr11 11334694 11334809 -137448663 + L1ME2 LINE L1 6052 6164 0 1662 234 52 41 chr11 11335714 11336198 -137447274 + MLT1D LTR MaLR 4 492 -13 728 212 14 20 chr11 11336231 11336377 -137447095 + MER45A DNA AcHobo 34 178 0 527 300 48 36 chr11 11336480 11336712 -137446760 - MIR SINE MIR -23 239 3 555 347 63 0 chr11 11336845 11337084 -137446388 + L3 LINE CR1 826 1079 -498 487 294 206 0 chr11 11337177 11337391 -137446081 + MIR SINE MIR 5 262 0 245 298 48 0 chr11 11337396 11337480 -137445992 + L3 LINE CR1 1197 1284 -293 356 353 43 0 chr11 11338475 11338591 -137444881 - L2 LINE L2 -18 3254 3134 342 263 21 81 chr11 11339574 11339760 -137443712 + MIR SINE MIR 88 262 0 188 355 16 16 chr11 11340471 11340533 -137442939 - L3 LINE CR1 -1304 273 212 330 153 0 0 chr11 11341047 11341106 -137442366 + CT-rich Low_complexity Low_complexity 4 62 0 1239 246 107 41 chr11 11342143 11342603 -137440869 - LTR16C LTR ERVL -1 490 1 283 234 26 13 chr11 11342642 11342719 -137440753 + L2 LINE L2 3203 3280 -33 218 322 66 66 chr11 11342734 11342917 -137440555 + L2 LINE L2 3004 3186 -86 549 252 155 7 chr11 11343690 11343845 -137439627 + MER5A DNA MER1_type 6 183 -6 337 284 155 21 chr11 11343929 11344168 -137439304 + L2 LINE L2 2843 3113 -159 399 270 97 65 chr11 11344845 11345030 -137438442 - MIR SINE MIR -21 241 51 2232 94 3 3 chr11 11345136 11345443 -137438029 + AluSp SINE Alu 1 307 -6 240 224 0 92 chr11 11345782 11345858 -137437614 + MIR SINE MIR 57 125 -83 1736 162 109 6 chr11 11345996 11346317 -137437155 - MER21B LTR ERV1 -107 756 403 320 193 18 0 chr11 11346329 11346386 -137437086 - MER21B LTR ERV1 -805 58 1 1324 117 5 15 chr11 11348042 11348247 -137435225 + L1PB1 LINE L1 5948 6150 -1 24 32 0 0 chr11 11348249 11348280 -137435192 + AT_rich Low_complexity Low_complexity 1 31 0 353 298 232 15 chr11 11348796 11348932 -137434540 + MIR SINE MIR 14 119 -143 1760 201 100 21 chr11 11348932 11349400 -137434072 - MLT1D LTR MaLR 0 505 1 353 298 232 15 chr11 11349400 11349461 -137434011 + MIR SINE MIR 119 254 -8 287 351 27 0 chr11 11349941 11350052 -137433420 - MIR SINE MIR -3 259 146 358 267 103 0 chr11 11350395 11350511 -137432961 + MIR SINE MIR 17 144 -64 870 220 42 35 chr11 11350521 11350780 -137432692 - MIR SINE MIR 0 262 2 1412 191 62 74 chr11 11350794 11351028 -137432444 + MSTD LTR MaLR 1 236 -160 261 0 0 0 chr11 11351028 11351057 -137432415 + (TC)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr11 11351058 11351088 -137432384 + (CA)n Simple_repeat Simple_repeat 2 31 0 1412 191 62 74 chr11 11351088 11351187 -137432285 + MSTD LTR MaLR 235 332 -64 340 373 19 28 chr11 11351287 11351499 -137431973 - L2 LINE L2 -198 3074 2865 617 324 105 30 chr11 11352558 11352919 -137430553 - L3 LINE CR1 -25 1552 1165 180 262 24 0 chr11 11355552 11355594 -137427878 - MIR SINE MIR 0 262 220 2080 117 13 10 chr11 11357460 11357759 -137425713 + AluSx SINE Alu 1 300 -12 445 265 29 18 chr11 11359564 11359734 -137423738 + LTR33 LTR ERVL 341 512 -9 1683 159 11 8 chr11 11360399 11360663 -137422809 + AluJo SINE Alu 1 265 -47 250 226 16 0 chr11 11360881 11360943 -137422529 - MER81 DNA DNA 0 114 52 895 253 60 65 chr11 11361034 11361480 -137421992 - LTR16A1 LTR ERVL -13 444 1 1301 246 72 3 chr11 11362215 11362549 -137420923 + LTR16C LTR ERVL 122 478 -13 1454 293 110 27 chr11 11363223 11364137 -137419335 + L2 LINE L2 2278 3282 -31 2240 213 72 40 chr11 11364137 11364738 -137418734 - MLT1E3 LTR MaLR 0 624 5 1454 293 110 27 chr11 11364738 11364773 -137418699 + L2 LINE L2 3282 3313 0 283 345 55 0 chr11 11364924 11365034 -137418438 + MIR SINE MIR 30 145 -63 189 121 0 0 chr11 11365101 11365134 -137418338 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 610 258 67 53 chr11 11367111 11367320 -137416152 + MIR SINE MIR 3 214 -48 305 271 262 8 chr11 11367639 11367761 -137415711 + MIR SINE MIR 97 249 -13 427 312 58 98 chr11 11367843 11368138 -137415334 + L2 LINE L2 2990 3272 0 * 457 279 87 12 chr11 11368126 11368287 -137415185 + MIR3 SINE MIR 7 179 -29 2441 108 0 0 chr11 11368683 11368989 -137414483 + AluSx SINE Alu 1 306 -6 198 236 236 0 chr11 11369277 11369366 -137414106 + L2 LINE L2 3204 3313 0 323 268 106 78 chr11 11371183 11371325 -137412147 - MER91A DNA MER1_type -16 180 35 203 184 0 0 chr11 11371969 11372007 -137411465 + T-rich Low_complexity Low_complexity 1 38 0 194 143 20 0 chr11 11372465 11372514 -137410958 + (CA)n Simple_repeat Simple_repeat 1 50 0 283 307 37 31 chr11 11372521 11372747 -137410725 + (CATG)n Simple_repeat Simple_repeat 1 227 0 425 244 224 50 chr11 11373111 11373312 -137410160 + MIR SINE MIR 12 247 -15 411 268 23 90 chr11 11373704 11373876 -137409596 + MIR SINE MIR 7 165 -48 188 326 61 20 chr11 11373893 11373991 -137409481 - L2 LINE L2 0 3272 3171 227 240 52 31 chr11 11374367 11374463 -137409009 + MIR SINE MIR 34 131 -77 203 200 0 0 chr11 11375084 11375119 -137408353 - L2 LINE L2 -17 3255 3221 191 272 148 0 chr11 11375788 11375869 -137407603 - MER5A DNA MER1_type 0 189 97 * 274 253 40 0 chr11 11375801 11375876 -137407596 + MER5A DNA MER1_type 34 111 -78 * 1023 252 40 89 chr11 11375871 11376299 -137407173 - L2 LINE L2 0 3313 2907 24 32 0 0 chr11 11376306 11376337 -137407135 + AT_rich Low_complexity Low_complexity 1 31 0 839 136 0 0 chr11 11376337 11376455 -137407017 - FLAM_C SINE Alu -15 118 1 483 251 90 6 chr11 11376917 11377084 -137406388 - MIR SINE MIR -62 200 20 311 282 48 40 chr11 11378003 11378127 -137405345 - MER5B DNA MER1_type -51 127 3 466 214 13 82 chr11 11378168 11378327 -137405145 - MER112 DNA MER1_type -82 178 31 286 301 55 68 chr11 11378989 11379135 -137404337 - MIR SINE MIR -110 152 9 1800 167 33 3 chr11 11379231 11379530 -137403942 + AluJo SINE Alu 1 308 -4 198 349 0 16 chr11 11379531 11379594 -137403878 + MER5B DNA MER1_type 44 105 -73 930 241 76 17 chr11 11379604 11379895 -137403577 - L1MD2 LINE L1 0 6359 6052 192 306 108 45 chr11 11379976 11380244 -137403228 + L2 LINE L2 2386 2670 -644 441 127 25 0 chr11 11381281 11381360 -137402112 + L1MB7 LINE L1 6103 6183 -1 1775 168 35 0 chr11 11383588 11383874 -137399598 - AluJb SINE Alu -14 298 3 211 349 96 64 chr11 11384268 11384517 -137398955 + L2 LINE L2 3014 3270 -2 209 191 24 0 chr11 11385192 11385234 -137398238 + CT-rich Low_complexity Low_complexity 4 46 0 633 269 282 4 chr11 11385624 11385777 -137397695 - L2 LINE L2 0 3313 3204 2647 110 6 3 chr11 11385777 11386140 -137397332 - THE1B LTR MaLR 0 364 1 633 269 282 4 chr11 11386140 11386448 -137397024 - L2 LINE L2 -109 3204 2703 874 219 85 18 chr11 11387250 11387474 -137395998 - MIR SINE MIR -9 253 15 756 199 139 35 chr11 11387581 11387782 -137395690 - MER58A DNA MER1_type -2 222 1 196 324 130 28 chr11 11387792 11387900 -137395572 + MIR SINE MIR 20 138 -124 238 288 54 9 chr11 11387934 11388045 -137395427 - L2 LINE L2 -15 3298 3183 843 239 73 28 chr11 11388743 11388990 -137394482 + MIR SINE MIR 4 261 -1 523 322 29 37 chr11 11389759 11390004 -137393468 - MIR SINE MIR -1 261 19 231 262 79 56 chr11 11390996 11391122 -137392350 + MIR3 SINE MIR 5 133 -75 724 209 34 75 chr11 11391762 11391805 -137391667 - L2 LINE L2 -19 3294 3251 2432 91 50 19 chr11 11391805 11392169 -137391303 + THE1C LTR MaLR 1 375 0 724 209 34 75 chr11 11392169 11392364 -137391108 - L2 LINE L2 -62 3251 3066 490 297 34 0 chr11 11393229 11393347 -137390125 - L2 LINE L2 -3 3310 3189 * 562 230 38 61 chr11 11393337 11393539 -137389933 - MIR SINE MIR -44 218 23 408 156 0 21 chr11 11394523 11394619 -137388853 + L1MC4 LINE L1 7689 7782 -260 28 29 0 0 chr11 11395537 11395572 -137387900 + AT_rich Low_complexity Low_complexity 1 35 0 567 214 34 0 chr11 11395572 11395689 -137387783 + MER94 DNA DNA 14 134 0 410 162 40 50 chr11 11395711 11395810 -137387662 - MLT1A2 LTR MaLR -274 100 3 429 242 17 33 chr11 11395834 11395954 -137387518 + L2 LINE L2 3195 3312 -1 * 1076 285 71 18 chr11 11395950 11396403 -137387069 - L2 LINE L2 -576 2738 2262 690 336 8 8 chr11 11396486 11396739 -137386733 - MIR SINE MIR 0 262 10 212 278 167 0 chr11 11396806 11396878 -137386594 + MIR3 SINE MIR 112 195 -13 270 267 82 52 chr11 11400233 11400368 -137383104 - MLT1J2 LTR MaLR -90 360 222 915 266 136 57 chr11 11401506 11402190 -137381282 + L1ME3A LINE L1 5324 6066 -104 2520 88 0 0 chr11 11402722 11403030 -137380442 - AluSq SINE Alu -5 308 1 491 297 7 7 chr11 11403598 11403753 -137379719 - MER117 DNA MER1_type -42 155 1 333 271 0 12 chr11 11403911 11403996 -137379476 - MIR3 SINE MIR -7 201 118 190 222 44 0 chr11 11404211 11404256 -137379216 - MIR SINE MIR -166 96 50 463 291 233 18 chr11 11404800 11405143 -137378329 - L2 LINE L2 0 3313 2897 26 30 0 0 chr11 11406116 11406149 -137377323 + AT_rich Low_complexity Low_complexity 1 33 0 334 260 57 37 chr11 11406415 11406554 -137376918 - MIR SINE MIR -58 150 7 418 305 42 37 chr11 11407009 11407199 -137376273 - L2 LINE L2 -585 2729 2539 277 259 71 80 chr11 11407705 11407739 -137375733 + MIR SINE MIR 75 108 -154 2068 127 0 40 chr11 11407739 11408063 -137375409 - AluJb SINE Alu 0 312 2 277 259 71 80 chr11 11408063 11408140 -137375332 + MIR SINE MIR 108 185 -77 860 263 46 39 chr11 11408157 11408416 -137375056 - MIR SINE MIR 0 262 2 254 241 0 35 chr11 11408419 11408477 -137374995 + L2 LINE L2 3205 3260 -12 247 293 106 123 chr11 11408905 11409165 -137374307 - L2 LINE L2 0 3272 3020 917 124 0 0 chr11 11409165 11409286 -137374186 - FLAM_C SINE Alu -12 121 1 247 293 106 123 chr11 11409286 11409449 -137374023 - L2 LINE L2 -252 3020 2856 262 264 55 0 chr11 11410537 11410628 -137372844 + MIR3 SINE MIR 110 205 -3 927 300 171 19 chr11 11412058 11412857 -137370615 + L2 LINE L2 1829 2749 -565 2345 95 7 13 chr11 11412858 11413164 -137370308 + AluSx SINE Alu 1 304 -8 215 288 64 116 chr11 11413263 11413513 -137369959 + L2 LINE L2 2819 3055 -217 190 268 0 0 chr11 11413609 11413650 -137369822 + MER5B DNA MER1_type 1 41 -137 * 266 203 51 63 chr11 11413646 11413725 -137369747 - MER5B DNA MER1_type -64 114 37 230 336 78 78 chr11 11413740 11413868 -137369604 + L2 LINE L2 3145 3272 0 300 255 156 50 chr11 11413905 11414046 -137369426 + MER5A DNA MER1_type 2 157 -32 * 340 256 146 36 chr11 11413939 11414076 -137369396 - MER5B DNA MER1_type -24 154 3 236 298 92 50 chr11 11414265 11414406 -137369066 + L2 LINE L2 3124 3270 -2 408 239 84 52 chr11 11414518 11414673 -137368799 + MIR SINE MIR 102 261 -1 774 213 120 0 chr11 11415118 11415301 -137368171 - MLT1D LTR MaLR 0 505 301 7047 49 3 4 chr11 11515309 11516803 -137266669 - L1PA6 LINE L1 -166 5988 4495 230 352 111 28 chr11 11516819 11516927 -137266545 + L2 LINE L2 3145 3261 -11 344 167 14 14 chr11 11517480 11517552 -137265920 + MLT1C LTR MaLR 269 340 -127 29 28 0 0 chr11 11517676 11517712 -137265760 + AT_rich Low_complexity Low_complexity 1 36 0 2231 160 34 3 chr11 11517712 11518069 -137265403 + MLT1C LTR MaLR 100 467 0 849 270 38 5 chr11 11518358 11518569 -137264903 - MIR SINE MIR -14 248 31 193 324 169 7 chr11 11518684 11518820 -137264652 + L2 LINE L2 2232 2389 -925 1771 73 5 0 chr11 11519447 11519667 -137263805 - L1PA5 LINE L1 0 6154 5934 576 300 58 61 chr11 11519997 11520106 -137263366 + L2 LINE L2 2516 2624 -690 1005 216 0 0 chr11 11520106 11520273 -137263199 + FAM SINE Alu 1 167 -8 576 300 58 61 chr11 11520273 11520493 -137262979 + L2 LINE L2 2624 2844 -470 1659 173 3 18 chr11 11520505 11520789 -137262683 - AluJb SINE Alu -20 292 13 233 259 0 0 chr11 11520791 11520849 -137262623 + L2 LINE L2 2912 2969 -303 1466 195 62 0 chr11 11520914 11521186 -137262286 - AluJo SINE Alu -23 289 1 381 22 0 0 chr11 11521595 11521641 -137261831 + (CA)n Simple_repeat Simple_repeat 2 47 0 4291 191 43 69 chr11 11522585 11524133 -137259339 - L1MD3 LINE L1 -743 5403 4442 378 0 0 0 chr11 11524133 11524175 -137259297 + (TA)n Simple_repeat Simple_repeat 2 43 0 4291 191 43 69 chr11 11524175 11524278 -137259194 - L1MD3 LINE L1 -1704 4442 4338 637 231 14 0 chr11 11524273 11524420 -137259052 + L1MD3 LINE L1 7842 7990 -5 * 355 227 182 9 chr11 11524637 11524747 -137258725 + MIR SINE MIR 29 157 -105 581 277 36 36 chr11 11524876 11525042 -137258430 + MIR SINE MIR 13 178 -84 1911 124 10 27 chr11 11525100 11525398 -137258074 + AluSq SINE Alu 1 293 -20 1838 140 14 3 chr11 11525415 11525708 -137257764 + AluJb SINE Alu 4 299 -13 1017 78 35 0 chr11 11525750 11525891 -137257581 - AluSg/x SINE Alu -10 300 155 1465 50 0 28 chr11 11525991 11526172 -137257300 - AluY SINE Alu -135 176 1 5282 144 27 47 chr11 11526172 11527011 -137256461 - L1MA7 LINE L1 -136 6155 5314 1742 155 3 24 chr11 11527011 11527307 -137256165 + AluJo SINE Alu 1 290 -22 5282 144 27 47 chr11 11527307 11527621 -137255851 - L1MA7 LINE L1 -977 5314 4995 610 290 56 52 chr11 11527699 11527752 -137255720 - MIR SINE MIR -3 259 208 2394 87 7 0 chr11 11527752 11528050 -137255422 - AluY SINE Alu -11 300 1 610 290 56 52 chr11 11528050 11528248 -137255224 - MIR SINE MIR -54 208 7 488 48 71 36 chr11 11529561 11529645 -137253827 + L1MA4 LINE L1 6213 6299 -1 892 118 0 52 chr11 11529691 11529826 -137253646 + FLAM_C SINE Alu 1 128 -15 213 180 40 20 chr11 11529983 11530033 -137253439 + MIR3 SINE MIR 109 159 -49 443 191 0 75 chr11 11530670 11530764 -137252708 + MER21B LTR ERV1 1 87 -776 3458 197 78 30 chr11 11530788 11531560 -137251912 + MER21B LTR ERV1 19 827 -36 312 295 72 0 chr11 11532607 11532746 -137250726 - MIR SINE MIR -13 249 101 189 0 0 0 chr11 11535167 11535188 -137248284 + (CTG)n Simple_repeat Simple_repeat 3 23 0 188 295 16 16 chr11 11535251 11535312 -137248160 - L2 LINE L2 -4 3309 3249 317 288 24 0 chr11 11535841 11535966 -137247506 + L1MEc LINE L1 1545 1672 -4724 4891 221 78 41 chr11 11535972 11536227 -137247245 + L1M4 LINE L1 2901 3145 -3001 2791 52 41 9 chr11 11536227 11536570 -137246902 + L1PA7 LINE L1 5801 6154 0 4891 221 78 41 chr11 11536570 11536675 -137246797 + L1M4 LINE L1 3145 3245 -2901 1930 151 10 13 chr11 11536675 11536987 -137246485 + AluJb SINE Alu 1 311 -1 4891 221 78 41 chr11 11536987 11538552 -137244920 + L1M4 LINE L1 3245 4953 -1193 792 160 6 12 chr11 11538552 11538721 -137244751 + GA-rich Low_complexity Low_complexity 2 169 0 510 141 101 0 chr11 11538731 11538830 -137244642 + L1M4 LINE L1 4964 5072 -1074 561 254 6 48 chr11 11538885 11539050 -137244422 - MLT2F LTR ERVL -505 158 1 692 291 4 16 chr11 11539051 11539302 -137244170 + L1ME3A LINE L1 4932 5179 -967 1042 219 89 11 chr11 11539404 11539732 -137243740 + L1ME3A LINE L1 5258 5637 -533 1255 147 87 19 chr11 11539812 11540194 -137243278 - MLT2A2 LTR ERVL 0 453 146 390 58 0 0 chr11 11540188 11540240 -137243232 + MADE1 DNA Mariner 29 80 0 * 913 230 72 57 chr11 11540246 11540564 -137242908 + L1ME3A LINE L1 5840 6162 -8 230 203 31 0 chr11 11543309 11543373 -137240099 + MLT1H LTR MaLR 21 86 -463 1044 224 120 87 chr11 11543409 11543834 -137239638 - MER41B LTR ERV1 -35 600 162 1123 69 0 2 chr11 11545830 11546078 -137237394 + AluY SINE Alu 1 301 -10 263 286 133 0 chr11 11547435 11547540 -137235932 - MIR SINE MIR -65 197 79 757 296 98 24 chr11 11548897 11549502 -137233970 + L1MC4a LINE L1 5176 5849 -355 747 133 59 0 chr11 11549501 11549636 -137233836 + L1MD3 LINE L1 7729 7871 -124 * 265 231 0 0 chr11 11549638 11549690 -137233782 + LTR30 LTR ERV1 1 52 -670 1554 53 126 0 chr11 11549690 11549897 -137233575 + LTR12 LTR ERV1 53 285 -429 269 239 28 0 chr11 11549897 11549968 -137233504 + LTR30 LTR ERV1 552 624 -98 734 180 25 0 chr11 11549968 11550090 -137233382 + LTR12 LTR ERV1 359 483 -231 305 130 0 0 chr11 11550112 11550166 -137233306 + L1MD3 LINE L1 7942 7995 0 2399 103 0 0 chr11 11550427 11550739 -137232733 - AluSx SINE Alu 0 312 1 826 234 20 70 chr11 11550940 11551184 -137232288 - MIR SINE MIR -2 260 29 2453 82 3 0 chr11 11551537 11551842 -137231630 - AluSp SINE Alu -7 306 1 24 0 0 0 chr11 11552351 11552375 -137231097 + AT_rich Low_complexity Low_complexity 1 24 0 244 330 89 18 chr11 11552609 11552721 -137230751 - L2 LINE L2 -4 3268 3149 385 345 17 0 chr11 11552757 11552873 -137230599 - MER91A DNA MER1_type -77 119 2 22 35 0 0 chr11 11553479 11553508 -137229964 + AT_rich Low_complexity Low_complexity 1 29 0 698 230 35 74 chr11 11553519 11553589 -137229883 - Charlie7 DNA MER1_type -1920 692 621 1432 185 31 28 chr11 11553589 11553876 -137229596 + AluJo SINE Alu 1 288 -24 698 230 35 74 chr11 11553876 11554062 -137229410 - Charlie7 DNA MER1_type -1991 621 446 840 278 68 0 chr11 11554064 11554298 -137229174 + MIR SINE MIR 2 251 -11 2193 189 7 36 chr11 11554298 11554743 -137228729 - Tigger2a DNA MER2_type -1 433 2 344 231 16 58 chr11 11554777 11554898 -137228574 - Charlie7 DNA MER1_type -2170 442 327 288 263 53 21 chr11 11554992 11555087 -137228385 - Charlie7 DNA MER1_type -2428 184 87 222 233 0 0 chr11 11555090 11555150 -137228322 + (TA)n Simple_repeat Simple_repeat 1 60 0 754 163 27 54 chr11 11555150 11555297 -137228175 - MER7A DNA MER2_type 0 346 204 2585 94 20 8 chr11 11555298 11555649 -137227823 + THE1A LTR MaLR 1 355 0 10419 103 3 8 chr11 11555649 11557233 -137226239 + THE1A-int LTR MaLR 1 1580 0 2627 98 8 14 chr11 11557233 11557590 -137225882 + THE1A LTR MaLR 1 355 0 1387 145 10 0 chr11 11557590 11557797 -137225675 - MER7A DNA MER2_type -139 207 1 460 219 21 25 chr11 11557805 11558050 -137225422 + (TATG)n Simple_repeat Simple_repeat 1 244 0 346 255 0 59 chr11 11558051 11558153 -137225319 - Charlie7 DNA MER1_type -2512 100 5 198 315 27 27 chr11 11558417 11558490 -137224982 - L2 LINE L2 -4 3268 3196 23 54 0 0 chr11 11558574 11558611 -137224861 + AT_rich Low_complexity Low_complexity 1 37 0 429 20 0 0 chr11 11558721 11558771 -137224701 + (TG)n Simple_repeat Simple_repeat 2 51 0 1960 123 3 11 chr11 11558772 11559056 -137224416 - AluSx SINE Alu -30 282 1 324 266 48 48 chr11 11559148 11559272 -137224200 + L2 LINE L2 3189 3312 -1 415 301 74 40 chr11 11559320 11559413 -137224059 - MIR3 SINE MIR -8 200 112 1564 212 98 22 chr11 11559413 11559781 -137223691 + MSTD LTR MaLR 1 396 0 415 301 74 40 chr11 11559781 11559863 -137223609 - MIR3 SINE MIR -96 112 19 2181 90 11 0 chr11 11560292 11560596 -137222876 + AluSq SINE Alu 3 309 0 1545 205 7 3 chr11 11560617 11560915 -137222557 - L1MD3 LINE L1 -127 7868 7570 348 247 13 0 chr11 11561023 11561100 -137222372 - L2 LINE L2 -5 3308 3231 1148 334 87 23 chr11 11561104 11561888 -137221584 - L2 LINE L2 -245 3068 2236 760 250 102 12 chr11 11562104 11562478 -137220994 + Charlie7 DNA MER1_type 57 509 -2103 385 160 53 0 chr11 11562527 11562600 -137220872 + Charlie7 DNA MER1_type 1817 1893 -719 792 168 15 86 chr11 11562600 11562797 -137220675 - MER96B DNA MER1_type? 0 417 235 1774 179 145 81 chr11 11562801 11563471 -137220001 + Charlie7 DNA MER1_type 1898 2610 -2 192 125 0 0 chr11 11564493 11564525 -137218947 + (CGG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr11 11565356 11565376 -137218096 + (T)n Simple_repeat Simple_repeat 1 20 0 598 292 23 12 chr11 11566913 11567084 -137216388 - MIR3 SINE MIR -6 202 30 1083 189 137 8 chr11 11567433 11567681 -137215791 + MER58 DNA MER1_type 1 280 -61 186 340 0 0 chr11 11568136 11568186 -137215286 + L2 LINE L2 3213 3262 -10 276 325 207 32 chr11 11568194 11568600 -137214872 - L3 LINE CR1 -18 1559 1083 412 219 52 10 chr11 11569110 11569206 -137214266 - MIR SINE MIR 0 262 163 512 315 158 20 chr11 11569830 11570322 -137213150 + L2 LINE L2 2148 2707 -607 518 216 74 27 chr11 11570407 11570555 -137212917 - MIR SINE MIR -30 232 78 567 192 110 107 chr11 11570628 11570699 -137212773 - HAL1 LINE L1 0 2507 2438 1766 157 109 3 chr11 11570699 11571012 -137212460 - MER7A DNA MER2_type -1 345 2 567 192 110 107 chr11 11571012 11571123 -137212349 - HAL1 LINE L1 -69 2438 2329 2398 77 0 7 chr11 11571123 11571422 -137212050 - AluSc SINE Alu -12 297 1 567 192 110 107 chr11 11571422 11571566 -137211906 - HAL1 LINE L1 -178 2329 2179 832 179 0 8 chr11 11571592 11571715 -137211757 - FLAM_C SINE Alu -20 123 2 1741 250 103 29 chr11 11571774 11571836 -137211636 - HAL1 LINE L1 -456 2051 1995 928 182 101 57 chr11 11571836 11572045 -137211427 + MER20 DNA MER1_type 2 219 0 1741 250 103 29 chr11 11572045 11572742 -137210730 - HAL1 LINE L1 -512 1995 1236 196 319 62 0 chr11 11572920 11573033 -137210439 + L2 LINE L2 2519 2638 -676 * 462 219 38 9 chr11 11573032 11573137 -137210335 - L2 LINE L2 -2 3311 3204 246 340 46 26 chr11 11573179 11573373 -137210099 + L2 LINE L2 2662 2859 -455 414 348 63 63 chr11 11573960 11574354 -137209118 + L2 LINE L2 2870 3263 -9 643 268 168 24 chr11 11574374 11574714 -137208758 + L2 LINE L2 2908 3296 -17 426 85 0 0 chr11 11574721 11574780 -137208692 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 596 278 17 6 chr11 11575297 11575473 -137207999 - MER5B DNA MER1_type 0 178 1 327 384 141 0 chr11 11576042 11576339 -137207133 - L2 LINE L2 -2 3270 2932 723 243 53 70 chr11 11576440 11576683 -137206789 - MIR SINE MIR -4 258 20 2278 106 10 10 chr11 11576689 11577000 -137206472 - AluSx SINE Alu 0 312 2 208 351 236 3 chr11 11577171 11577464 -137206008 - L2 LINE L2 -670 2644 2284 947 128 54 0 chr11 11578613 11578762 -137204710 - AluSg/x SINE Alu -4 308 152 293 324 120 21 chr11 11578913 11579055 -137204417 + L2 LINE L2 3111 3266 -6 344 338 47 27 chr11 11579348 11579496 -137203976 - MIR SINE MIR -76 186 36 363 327 111 35 chr11 11580393 11580592 -137202880 + MIR SINE MIR 49 262 0 329 0 0 24 chr11 11580637 11580679 -137202793 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 20119 39 1 0 chr11 11580679 11583745 -137199727 - L1PA4 LINE L1 -11 6144 3071 2193 91 30 7 chr11 11584060 11584356 -137199116 - AluSx SINE Alu -9 303 1 470 283 43 8 chr11 11584869 11585021 -137198451 - MIR SINE MIR -67 141 36 596 267 27 14 chr11 11585217 11585363 -137198109 - MIR SINE MIR -34 228 81 868 245 65 86 chr11 11585386 11585769 -137197703 + MLT1I LTR MaLR 35 409 0 290 348 0 0 chr11 11585769 11585858 -137197614 - MIR SINE MIR -169 93 5 25 0 0 0 chr11 11585969 11585994 -137197478 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr11 11586311 11586344 -137197128 + AT_rich Low_complexity Low_complexity 1 33 0 1426 204 50 66 chr11 11586897 11587293 -137196179 - MLT1B LTR MaLR 0 390 1 1967 144 0 22 chr11 11587662 11587974 -137195498 - AluSx SINE Alu -7 305 1 2049 94 7 21 chr11 11588954 11589267 -137194205 - AluSx SINE Alu 0 309 1 1507 207 78 21 chr11 11589553 11589925 -137193547 - L1ME1 LINE L1 -8 6158 5766 2415 48 21 0 chr11 11589941 11590230 -137193242 - AluY SINE Alu -16 295 1 243 265 294 0 chr11 11590246 11590348 -137193124 + MIR SINE MIR 104 235 -27 216 0 0 0 chr11 11591816 11591840 -137191632 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3343 22 16 0 chr11 11591840 11592211 -137191261 - L1PA2 LINE L1 0 6155 5779 25 0 0 0 chr11 11592294 11592319 -137191153 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr11 11592390 11592414 -137191058 + (CAA)n Simple_repeat Simple_repeat 3 26 0 821 339 93 13 chr11 11592498 11592958 -137190514 + L3 LINE CR1 1056 1552 -25 346 187 68 13 chr11 11594129 11594237 -137189235 + FRAM/FAM SINE Alu 11 73 -102 884 199 18 58 chr11 11596416 11596642 -137186830 - L1MA10 LINE L1 0 6334 6118 1194 136 57 0 chr11 11596652 11596948 -137186524 - L1P LINE L1 -730 5426 5106 3438 190 3 0 chr11 11597037 11597699 -137185773 - L1 LINE L1 -919 5227 4564 3598 108 124 47 chr11 11597709 11598387 -137185085 + L1PB4 LINE L1 5427 6156 0 1913 198 44 5 chr11 11598386 11598770 -137184702 - L1MA9 LINE L1 -188 6124 5726 * 1988 146 10 0 chr11 11598894 11599188 -137184284 + AluSx SINE Alu 1 297 -15 2064 111 7 30 chr11 11599322 11599619 -137183853 + AluSc SINE Alu 1 290 -19 221 106 0 85 chr11 11599704 11599751 -137183721 - L2 LINE L2 0 3313 3271 183 102 0 184 chr11 11599724 11599773 -137183699 - MIR SINE MIR -10 252 213 * 220 335 100 39 chr11 11600389 11600699 -137182773 + L2 LINE L2 858 1186 -2128 2293 285 191 13 chr11 11600847 11602064 -137181408 + L2 LINE L2 1808 3255 -58 447 257 142 0 chr11 11602246 11602394 -137181078 + L2 LINE L2 2587 2755 -559 754 183 14 0 chr11 11602562 11602704 -137180768 + L1MA8 LINE L1 6145 6288 -3 187 256 0 0 chr11 11604756 11604795 -137178677 + L2 LINE L2 3226 3264 -8 307 204 45 57 chr11 11606159 11606247 -137177225 - LTR33A LTR ERVL 0 523 437 241 280 140 64 chr11 11606374 11606531 -137176941 - MLT2E LTR ERVL -420 208 40 654 236 13 25 chr11 11606769 11606926 -137176546 - L2 LINE L2 0 3313 3159 1266 196 19 11 chr11 11606939 11607205 -137176267 - L1MB8 LINE L1 0 6178 5911 415 305 47 0 chr11 11607861 11607989 -137175483 + MIR SINE MIR 113 246 -16 738 214 107 28 chr11 11609005 11609220 -137174252 + MIR SINE MIR 18 249 -13 458 319 27 21 chr11 11609302 11609489 -137173983 + MIR SINE MIR 30 216 -46 461 249 112 6 chr11 11609837 11610006 -137173466 + MIR SINE MIR 73 259 -3 329 282 194 70 chr11 11610321 11610707 -137172765 - L2 LINE L2 -22 3250 2817 190 324 40 40 chr11 11610824 11610972 -137172500 - L2 LINE L2 -840 2474 2327 210 405 32 14 chr11 11612829 11613049 -137170423 - L2 LINE L2 -208 3064 2841 331 395 34 8 chr11 11613367 11613486 -137169986 + L2 LINE L2 3111 3232 -40 2094 118 3 23 chr11 11614314 11614619 -137168853 + AluSx SINE Alu 1 299 -13 885 253 54 8 chr11 11614975 11615216 -137168256 - MIR SINE MIR -10 252 1 2040 149 12 18 chr11 11615234 11615569 -137167903 + L1MB5 LINE L1 5842 6174 0 564 260 38 53 chr11 11617417 11617777 -137165695 - L1MC4a LINE L1 -85 6036 5684 188 245 20 0 chr11 11619157 11619206 -137164266 - L2 LINE L2 0 3313 3264 598 255 139 23 chr11 11619406 11619622 -137163850 - MIR SINE MIR 0 262 22 2385 81 0 19 chr11 11619622 11619930 -137163542 - AluSc SINE Alu -7 302 1 745 224 51 41 chr11 11620338 11620534 -137162938 + MIR SINE MIR 20 217 -45 366 127 18 0 chr11 11620710 11620765 -137162707 - MLT1B LTR MaLR 0 467 412 2090 110 3 32 chr11 11620803 11620833 -137162639 + MER1A DNA MER1_type 230 259 -2443 2177 115 0 3 chr11 11620833 11621128 -137162344 + AluSc SINE Alu 1 294 -15 2090 110 3 32 chr11 11621128 11621406 -137162066 + MER1A DNA MER1_type 259 529 0 1594 164 16 85 chr11 11621406 11621775 -137161697 - MLT1B LTR MaLR -47 343 1 332 309 36 27 chr11 11621875 11621985 -137161487 - MIR SINE MIR -131 131 21 402 272 24 0 chr11 11622103 11622228 -137161244 - MIR3 SINE MIR -4 204 77 433 311 40 6 chr11 11622905 11623082 -137160390 + MIR SINE MIR 62 244 -18 22 0 0 0 chr11 11623083 11623105 -137160367 + AT_rich Low_complexity Low_complexity 1 22 0 684 246 66 66 chr11 11623540 11623796 -137159676 + Charlie8 DNA MER1_type 31 286 -2131 181 246 0 66 chr11 11623965 11624026 -137159446 - MIR SINE MIR -2 260 204 1863 138 0 0 chr11 11624330 11624599 -137158873 + AluJb SINE Alu 26 294 -18 1038 295 107 44 chr11 11625122 11626794 -137156678 - L1P4 LINE L1 -529 5636 3838 1800 158 11 0 chr11 11626794 11627099 -137156373 + AluSx SINE Alu 1 308 0 1038 295 107 44 chr11 11627099 11627224 -137156248 - L1P4 LINE L1 -2327 3838 3722 198 0 0 0 chr11 11628945 11628967 -137154505 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 21 0 0 0 chr11 11629247 11629268 -137154204 + AT_rich Low_complexity Low_complexity 1 21 0 1158 273 129 19 chr11 11629451 11629979 -137153493 - L1ME3A LINE L1 -202 5968 5383 239 312 81 43 chr11 11630145 11630331 -137153141 + L2 LINE L2 2687 2879 -435 21 36 0 0 chr11 11631045 11631073 -137152399 + AT_rich Low_complexity Low_complexity 1 28 0 393 180 19 50 chr11 11631082 11631203 -137152269 - MIR SINE MIR -93 115 25 358 156 78 0 chr11 11632353 11632417 -137151055 + MER3 DNA MER1_type 40 108 -101 1873 121 71 4 chr11 11632646 11632927 -137150545 - L1MB7 LINE L1 -2 6182 5883 393 347 41 0 chr11 11633043 11633191 -137150281 - MIR SINE MIR -65 143 38 583 333 51 81 chr11 11634249 11634718 -137148754 + L2 LINE L2 2817 3271 -1 620 317 75 33 chr11 11635176 11635627 -137147845 + MLT1L LTR MaLR 142 611 -4 252 59 0 0 chr11 11636159 11636193 -137147279 + (TTA)n Simple_repeat Simple_repeat 1 34 0 243 255 96 0 chr11 11636206 11636300 -137147172 - L1ME3 LINE L1 -20 6142 6040 848 240 47 108 chr11 11636545 11636907 -137146565 + MER102b DNA MER1_type 2 341 0 258 321 252 0 chr11 11637064 11637195 -137146277 + MIR SINE MIR 86 249 -13 646 318 37 30 chr11 11637759 11638055 -137145417 + L2 LINE L2 2644 2941 -373 345 361 28 14 chr11 11638334 11638478 -137144994 + L2 LINE L2 3127 3272 0 195 302 0 19 chr11 11639850 11639903 -137143569 + MIR SINE MIR 35 86 -176 575 315 34 17 chr11 11640311 11640549 -137142923 + L2 LINE L2 2508 2749 -565 508 196 10 20 chr11 11640636 11640738 -137142734 - L2 LINE L2 0 3313 3213 1670 183 75 51 chr11 11642882 11642938 -137140534 - MLT2B1 LTR ERVL 0 414 361 477 0 0 0 chr11 11642938 11642991 -137140481 + (CA)n Simple_repeat Simple_repeat 2 54 0 1670 183 75 51 chr11 11642991 11643370 -137140102 - MLT2B1 LTR ERVL -53 361 3 561 217 78 0 chr11 11644124 11644253 -137139219 - L2 LINE L2 0 3313 3175 276 272 12 12 chr11 11644401 11644482 -137138990 - MLT1K LTR MaLR 0 588 508 232 210 48 16 chr11 11644742 11644804 -137138668 - MLT1K LTR MaLR -343 245 182 272 193 24 60 chr11 11645054 11645137 -137138335 + MIR SINE MIR 183 262 0 24 32 0 0 chr11 11645653 11645684 -137137788 + AT_rich Low_complexity Low_complexity 1 31 0 747 181 222 6 chr11 11645948 11646119 -137137353 + MER3 DNA MER1_type 1 208 -1 244 284 202 0 chr11 11646259 11646368 -137137104 - L2 LINE L2 -1 3271 3141 380 364 12 24 chr11 11646815 11646980 -137136492 - L2 LINE L2 -528 2786 2624 2382 94 0 0 chr11 11647303 11647601 -137135871 - AluY SINE Alu -13 298 1 376 368 118 0 chr11 11647972 11648176 -137135296 + L3 LINE CR1 1302 1529 -48 302 208 0 0 chr11 11648455 11648508 -137134964 + MER20 DNA MER1_type 167 219 0 265 310 155 8 chr11 11649288 11649417 -137134055 + MIR SINE MIR 22 169 -93 186 286 24 0 chr11 11649427 11649469 -137134003 + L2 LINE L2 3259 3301 -12 855 201 84 80 chr11 11649485 11649837 -137133635 - L1MA9 LINE L1 -25 6275 5928 811 203 7 0 chr11 11650209 11650362 -137133110 - FRAM SINE Alu -14 162 9 2411 66 3 13 chr11 11650379 11650682 -137132790 - AluY SINE Alu -11 300 1 1768 156 25 3 chr11 11651881 11652163 -137131309 + AluJb SINE Alu 1 288 -24 1714 201 27 70 chr11 11652248 11652662 -137130810 + MSTD LTR MaLR 1 396 0 2115 133 0 0 chr11 11652695 11652989 -137130483 + AluSx SINE Alu 1 294 -18 239 146 0 0 chr11 11653001 11653042 -137130430 + L1MC4 LINE L1 6663 6703 -1339 200 132 94 19 chr11 11653042 11653063 -137130409 + (CATA)n Simple_repeat Simple_repeat 4 22 -38 2458 190 68 6 chr11 11653063 11653536 -137129936 + MLT1D LTR MaLR 3 504 -1 200 132 94 19 chr11 11653536 11653567 -137129905 + (CATA)n Simple_repeat Simple_repeat 22 60 0 918 161 57 16 chr11 11653671 11653863 -137129609 + MIR SINE MIR 41 240 -22 357 252 173 22 chr11 11653855 11653994 -137129478 - MIR SINE MIR -100 162 3 * 37 23 0 0 chr11 11654132 11654176 -137129296 + AT_rich Low_complexity Low_complexity 1 44 0 852 292 67 29 chr11 11654358 11655050 -137128422 - L1MC4a LINE L1 -367 5795 5273 989 209 0 31 chr11 11655139 11655335 -137128137 + MER58A DNA MER1_type 27 216 -8 464 281 41 51 chr11 11655339 11655535 -137127937 - L1M4 LINE L1 -330 5791 5598 688 328 42 4 chr11 11655618 11655856 -137127616 - MIR SINE MIR -15 247 1 248 231 0 0 chr11 11656181 11656233 -137127239 + MIR SINE MIR 80 131 -131 18692 61 2 1 chr11 11656574 11659630 -137123842 + L1P LINE L1 11 3069 -3077 214 247 27 0 chr11 11759807 11759880 -137023592 + G-rich Low_complexity Low_complexity 3 77 0 21 71 0 0 chr11 11759919 11759961 -137023511 + GC_rich Low_complexity Low_complexity 1 42 0 191 59 0 59 chr11 11760521 11760555 -137022917 + (CGGGG)n Simple_repeat Simple_repeat 3 34 0 360 210 25 0 chr11 11761464 11761545 -137021927 + MIR SINE MIR 47 129 -133 663 284 43 43 chr11 11764375 11764629 -137018843 - MIR SINE MIR -1 261 8 194 427 68 0 chr11 11764910 11765027 -137018445 - MER5B DNA MER1_type -26 152 28 26 0 0 0 chr11 11765414 11765440 -137018032 + AT_rich Low_complexity Low_complexity 1 26 0 934 292 101 11 chr11 11765947 11766314 -137017158 - LTR16C LTR ERVL -16 475 76 648 301 44 40 chr11 11766393 11766619 -137016853 + MIR SINE MIR 35 261 -1 315 351 97 0 chr11 11768069 11768223 -137015249 + MIR SINE MIR 38 206 -56 2075 115 16 45 chr11 11768350 11768662 -137014810 + AluSx SINE Alu 1 303 -9 2294 83 0 7 chr11 11768662 11768989 -137014483 + AluSx SINE Alu 1 325 0 236 314 122 58 chr11 11769324 11769480 -137013992 - MIR3 SINE MIR -7 201 36 1446 122 19 14 chr11 11769492 11769730 -137013742 - AluSg/x SINE Alu 0 310 87 348 316 8 8 chr11 11770075 11770192 -137013280 - MIR SINE MIR -3 259 143 1800 152 17 26 chr11 11773780 11774082 -137009390 + AluJo SINE Alu 1 299 -13 268 326 42 0 chr11 11774809 11774904 -137008568 + MIR SINE MIR 109 207 -55 24 32 0 0 chr11 11775798 11775829 -137007643 + AT_rich Low_complexity Low_complexity 1 31 0 550 288 87 6 chr11 11776008 11776271 -137007201 - L1MC/D LINE L1 -480 5641 5401 621 134 31 0 chr11 11776292 11776389 -137007083 - MSTB1 LTR MaLR -13 419 320 729 272 35 17 chr11 11776770 11777002 -137006470 + MIR SINE MIR 14 249 -13 319 175 53 0 chr11 11777290 11777347 -137006125 + LTR40a LTR ERVL 3 62 -457 918 196 91 5 chr11 11777347 11777556 -137005916 - MSTB1 LTR MaLR -2 430 204 917 170 0 0 chr11 11777586 11777727 -137005745 - FLAM_C SINE Alu -2 141 1 875 183 118 0 chr11 11777727 11777896 -137005576 - MSTB1 LTR MaLR -236 190 2 1642 215 27 9 chr11 11777899 11778287 -137005185 + LTR40a LTR ERVL 58 519 0 189 269 51 115 chr11 11778287 11778521 -137004951 - L2 LINE L2 -227 3045 2827 397 323 87 0 chr11 11779183 11779344 -137004128 - MIR SINE MIR -35 227 53 3025 158 32 62 chr11 11779423 11780082 -137003390 - L1MB2 LINE L1 -7 6164 5526 419 318 13 7 chr11 11781510 11781661 -137001811 - MER117 DNA MER1_type -3 194 43 213 333 53 0 chr11 11781699 11781774 -137001698 - MIR3 SINE MIR -49 159 81 199 288 81 54 chr11 11782010 11782121 -137001351 + L2 LINE L2 3199 3312 -1 455 278 123 11 chr11 11782265 11782452 -137001020 - MIR SINE MIR -7 255 48 345 297 100 65 chr11 11783358 11783587 -136999885 - MIR SINE MIR -6 256 20 384 291 44 16 chr11 11783637 11783822 -136999650 - MIR SINE MIR -7 255 61 208 254 0 0 chr11 11784453 11784508 -136998964 + T-rich Low_complexity Low_complexity 1 55 0 1399 257 66 0 chr11 11784632 11785056 -136998416 + Charlie4a DNA MER1_type 56 507 -1 767 232 49 40 chr11 11789387 11789611 -136993861 + MIR SINE MIR 36 261 -1 748 148 0 37 chr11 11789686 11789821 -136993651 + FLAM_C SINE Alu 3 132 -1 799 110 0 15 chr11 11789840 11789976 -136993496 + (GAA)n Simple_repeat Simple_repeat 2 135 0 618 210 114 0 chr11 11790250 11790417 -136993055 - MER53 DNA DNA 0 189 4 333 173 102 87 chr11 11791784 11791911 -136991561 + MIR SINE MIR 18 146 -62 435 239 190 7 chr11 11792340 11792482 -136990990 - MIR SINE MIR -48 214 47 875 159 26 7 chr11 11793186 11793337 -136990135 - MLT1C LTR MaLR 0 467 314 1047 165 16 31 chr11 11793434 11793628 -136989844 - AluSg/x SINE Alu -4 306 116 1681 185 87 6 chr11 11793680 11794026 -136989446 + MSTD LTR MaLR 21 394 -2 278 202 83 36 chr11 11795076 11795160 -136988312 + MIR SINE MIR 62 149 -113 256 246 0 0 chr11 11796212 11796269 -136987203 - MIR SINE MIR -150 112 56 285 234 0 0 chr11 11796875 11796939 -136986533 - L2 LINE L2 -1 3312 3249 427 291 85 83 chr11 11797044 11797398 -136986074 - L1MC4a LINE L1 -297 5824 5495 1475 193 99 68 chr11 11797398 11797884 -136985588 - MLT1D LTR MaLR -2 503 3 427 291 85 83 chr11 11797884 11798109 -136985363 - L1MC4a LINE L1 -626 5495 5272 205 248 168 56 chr11 11798409 11798534 -136984938 + MIR SINE MIR 90 228 -34 456 145 12 12 chr11 11800247 11800330 -136983142 + AluJ/FLAM SINE Alu 2 84 -228 205 272 72 16 chr11 11802079 11802204 -136981268 + L2 LINE L2 2926 3057 -215 247 310 128 38 chr11 11802625 11802938 -136980534 - L2 LINE L2 -927 2387 2047 855 128 0 0 chr11 11803112 11803229 -136980243 + FLAM_C SINE Alu 7 123 -20 268 314 112 18 chr11 11804436 11804659 -136978813 - MIR SINE MIR -15 247 4 357 331 100 0 chr11 11805596 11805726 -136977746 - MIR SINE MIR -16 246 104 370 338 105 32 chr11 11805854 11806262 -136977210 - L2 LINE L2 -6 3266 2829 1097 215 67 38 chr11 11806785 11807104 -136976368 - MLT1D LTR MaLR -100 374 57 526 160 47 9 chr11 11807095 11807201 -136976271 - MLT1D LTR MaLR -361 144 35 * 335 290 105 0 chr11 11812585 11812709 -136970763 - MIR SINE MIR 0 262 126 1535 156 44 16 chr11 11812782 11813097 -136970375 + MER33 DNA MER1_type 1 324 0 233 160 20 20 chr11 11813805 11813855 -136969617 - L1MC/D LINE L1 -2048 5760 5711 317 82 41 0 chr11 11813879 11813928 -136969544 + AluY SINE Alu 85 135 -166 231 326 87 23 chr11 11814071 11814243 -136969229 - L1MC/D LINE L1 -529 5592 5410 385 279 101 73 chr11 11814270 11814696 -136968776 - L1MC/D LINE L1 -824 5322 4885 30 0 0 0 chr11 11815032 11815062 -136968410 + AT_rich Low_complexity Low_complexity 1 30 0 226 303 151 0 chr11 11815817 11815936 -136967536 + L2 LINE L2 3128 3264 -8 2033 158 74 12 chr11 11816584 11816988 -136966484 + MLT1C LTR MaLR 1 429 -38 859 43 29 22 chr11 11818588 11818726 -136964746 + (GAAA)n Simple_repeat Simple_repeat 1 139 0 431 311 64 38 chr11 11819269 11819594 -136963878 + L1ME2 LINE L1 5621 5953 -246 3205 164 36 93 chr11 11820067 11820903 -136962569 + L1PA16 LINE L1 4710 5593 -573 2500 112 16 19 chr11 11820903 11821279 -136962193 + THE1C LTR MaLR 1 375 0 9736 112 40 52 chr11 11821279 11822878 -136960594 + THE1B-int LTR MaLR 1 1580 0 2790 97 0 0 chr11 11822878 11823239 -136960233 + THE1B LTR MaLR 1 361 -3 3205 164 36 93 chr11 11823239 11823887 -136959585 + L1PA16 LINE L1 5590 6107 -59 186 71 0 0 chr11 11823896 11823924 -136959548 + (TAA)n Simple_repeat Simple_repeat 3 30 0 351 282 0 51 chr11 11825717 11825834 -136957638 - MER5B DNA MER1_type -1 177 67 1357 223 64 9 chr11 11826348 11826693 -136956779 + L1ME1 LINE L1 5803 6166 0 187 378 25 17 chr11 11826873 11826992 -136956480 + MIR SINE MIR 16 135 -73 549 294 23 14 chr11 11827083 11827297 -136956175 + MIR SINE MIR 47 262 0 396 250 214 14 chr11 11827996 11828136 -136955336 - MER5A DNA MER1_type -9 180 13 1618 116 102 69 chr11 11828573 11828897 -136954575 + THE1C LTR MaLR 1 340 -35 2200 93 41 0 chr11 11828897 11829188 -136954284 - AluY SINE Alu -7 304 2 1618 116 102 69 chr11 11829188 11829226 -136954246 + THE1C LTR MaLR 340 375 0 517 306 88 10 chr11 11829448 11829742 -136953730 - L2 LINE L2 0 3313 2997 1897 122 16 7 chr11 11829761 11830052 -136953420 + L1MB5 LINE L1 5254 5550 -624 2541 113 13 5 chr11 11830052 11830424 -136953048 + THE1C LTR MaLR 1 375 0 9604 130 37 40 chr11 11830424 11832004 -136951468 + THE1C-int LTR MaLR 1 1575 -5 2290 150 16 11 chr11 11832007 11832380 -136951092 + THE1C LTR MaLR 1 375 0 2886 179 69 14 chr11 11832381 11832973 -136950499 + L1MB5 LINE L1 5542 6166 -8 21 0 0 0 chr11 11833170 11833191 -136950281 + AT_rich Low_complexity Low_complexity 1 21 0 309 332 83 5 chr11 11833200 11833405 -136950067 + MIR SINE MIR 30 250 -12 3065 223 55 64 chr11 11833427 11834229 -136949243 - MER21B LTR ERV1 -60 803 9 3083 121 47 25 chr11 11834394 11834880 -136948592 - LOR1a LTR ERV1 0 497 1 3479 174 20 0 chr11 11835286 11835879 -136947593 - LTR31 LTR ERV1 0 619 15 1242 238 20 16 chr11 11836679 11836982 -136946490 + MER31B LTR ERV1 1 304 -162 2553 123 65 5 chr11 11836983 11837398 -136946074 + MER83 LTR ERV1 1 440 -8 923 195 11 16 chr11 11837399 11837589 -136945883 + MER31A LTR ERV1 297 485 0 2489 115 69 20 chr11 11838493 11838901 -136944571 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr11 11838965 11838986 -136944486 + (TG)n Simple_repeat Simple_repeat 2 22 0 195 371 41 0 chr11 11839079 11839176 -136944296 - MER5B DNA MER1_type 0 178 78 1188 164 93 22 chr11 11840502 11840771 -136942701 - MER33 DNA MER1_type -36 288 1 255 294 37 0 chr11 11840841 11840950 -136942522 + L1ME LINE L1 5593 5705 -2103 383 314 114 11 chr11 11840960 11841135 -136942337 + MIR SINE MIR 20 212 -50 228 268 0 0 chr11 11841191 11841247 -136942225 + L1ME LINE L1 5736 5791 -330 218 340 87 0 chr11 11841252 11841355 -136942117 + L2 LINE L2 3199 3310 -3 12809 216 36 14 chr11 11841409 11845093 -136938379 + L1PA13 LINE L1 1085 4841 -1956 1216 214 33 17 chr11 11845068 11845367 -136938105 + L1PA15 LINE L1 3891 4194 -2603 * 6325 101 11 12 chr11 11845374 11847352 -136936120 + L1PA15 LINE L1 4830 6808 -8 473 179 28 28 chr11 11847360 11847466 -136936006 + L1M3 LINE L1 5406 5511 -660 2209 137 27 36 chr11 11847469 11847834 -136935638 - THE1B LTR MaLR -2 362 1 11254 98 13 12 chr11 11847837 11848864 -136934608 - THE1B-int LTR MaLR -28 1552 521 2035 135 37 0 chr11 11848864 11849161 -136934311 + AluSg SINE Alu 1 308 -2 11254 98 13 12 chr11 11849161 11849677 -136933795 - THE1B-int LTR MaLR -1059 521 7 2092 148 36 41 chr11 11849688 11850052 -136933420 - THE1B LTR MaLR 0 364 3 537 190 0 0 chr11 11850054 11850154 -136933318 + L1M3 LINE L1 5507 5606 -565 182 320 20 46 chr11 11851213 11851366 -136932106 + MIR SINE MIR 68 216 -46 361 244 13 0 chr11 11851535 11851613 -136931859 + MIR3 SINE MIR 83 161 -47 450 104 0 0 chr11 11851768 11851835 -136931637 - MER41A LTR ERV1 -86 468 402 1692 192 7 7 chr11 11852990 11853292 -136930180 + AluJo SINE Alu 1 302 -10 2066 141 6 13 chr11 11853292 11853605 -136929867 + AluJo SINE Alu 1 311 -1 888 128 32 166 chr11 11853610 11853883 -136929589 - MER33 DNA MER1_type -89 274 1 692 159 7 0 chr11 11853905 11854043 -136929429 + (CA)n Simple_repeat Simple_repeat 1 139 0 1769 139 157 16 chr11 11854099 11854474 -136928998 + MSTA LTR MaLR 1 428 0 200 306 81 18 chr11 11854477 11854588 -136928884 - L2 LINE L2 -190 3082 2965 382 289 0 0 chr11 11854649 11854732 -136928740 + MER58 DNA MER1_type 4 86 -255 620 202 0 0 chr11 11854732 11854846 -136928626 - AluJb SINE Alu -22 290 177 922 152 64 59 chr11 11855846 11855924 -136927548 - MER3 DNA MER1_type -2 207 131 1744 163 27 7 chr11 11855924 11856225 -136927247 + AluJb SINE Alu 5 311 -1 922 152 64 59 chr11 11856225 11856350 -136927122 - MER3 DNA MER1_type -78 131 3 427 260 10 0 chr11 11856523 11856627 -136926845 - MER8 DNA MER2_type -134 105 1 395 280 73 13 chr11 11856628 11856778 -136926694 + MIR SINE MIR 76 234 -28 2234 85 48 3 chr11 11857749 11858044 -136925428 + AluSg SINE Alu 1 308 -2 263 279 0 13 chr11 11858117 11858196 -136925276 + (CA)n Simple_repeat Simple_repeat 1 78 0 880 209 51 5 chr11 11859367 11859581 -136923891 + MIR SINE MIR 40 261 -1 1557 166 53 28 chr11 11859594 11859878 -136923594 - AluJo SINE Alu -21 291 1 578 210 76 32 chr11 11859920 11860005 -136923467 - L2 LINE L2 -4 3309 3229 2039 178 53 59 chr11 11860005 11860512 -136922960 + MLT1D LTR MaLR 1 504 -1 578 210 76 32 chr11 11860512 11860583 -136922889 - L2 LINE L2 -84 3229 3146 318 222 0 0 chr11 11861703 11861757 -136921715 + MER91 DNA MER1_type 127 180 -10 287 282 99 28 chr11 11862052 11862194 -136921278 + L1ME LINE L1 5600 5751 -370 2492 116 7 52 chr11 11862377 11862815 -136920657 - L1MA9 LINE L1 -3 6309 5892 1107 144 134 119 chr11 11862815 11862963 -136920509 + MER2 DNA MER2_type 16 160 -185 2094 132 0 0 chr11 11862963 11863273 -136920199 - AluSx SINE Alu -2 310 1 1107 144 134 119 chr11 11863273 11863444 -136920028 + MER2 DNA MER2_type 160 340 -5 573 92 0 0 chr11 11863452 11863528 -136919944 - L1MA9 LINE L1 -389 5902 5827 462 295 0 7 chr11 11863575 11863714 -136919758 - LTR16C LTR ERVL 0 491 354 826 178 7 0 chr11 11863718 11863864 -136919608 + FRAM SINE Alu 1 142 -34 519 254 146 9 chr11 11864085 11864298 -136919174 - Tigger8 DNA MER2_type -174 492 251 757 172 8 0 chr11 11864300 11864422 -136919050 + FLAM_A SINE Alu 1 123 -10 763 238 81 0 chr11 11864519 11864679 -136918793 - MIR SINE MIR -75 187 15 350 321 46 0 chr11 11864695 11864804 -136918668 - Tigger8 DNA MER2_type -518 148 35 2154 148 97 8 chr11 11865080 11865471 -136918001 + MSTA LTR MaLR 3 428 0 302 176 44 29 chr11 11865852 11865920 -136917552 - MLT1G LTR MaLR 0 590 522 802 156 38 59 chr11 11866020 11866206 -136917266 - MER53 DNA DNA -7 182 1 666 285 65 43 chr11 11866356 11866633 -136916839 - MLT1H1 LTR MaLR -272 283 1 31 26 0 0 chr11 11866892 11866930 -136916542 + AT_rich Low_complexity Low_complexity 1 38 0 1511 133 17 4 chr11 11867077 11867310 -136916162 - AluSx SINE Alu -75 237 2 1502 179 78 38 chr11 11867446 11867598 -136915874 + MLT1A1 LTR MaLR 5 149 -216 1893 146 3 3 chr11 11867598 11867899 -136915573 + AluJb SINE Alu 1 301 -11 1502 179 78 38 chr11 11867899 11868027 -136915445 + MLT1A1 LTR MaLR 149 304 -61 2067 119 0 0 chr11 11868027 11868321 -136915151 + AluSx SINE Alu 1 294 -18 1502 179 78 38 chr11 11868321 11868386 -136915086 + MLT1A1 LTR MaLR 304 365 0 351 286 124 0 chr11 11868422 11868527 -136914945 - L2 LINE L2 -13 3300 3183 418 214 0 0 chr11 11869148 11869232 -136914240 + MER103 DNA DNA 75 158 -8 1719 206 79 12 chr11 11869246 11869677 -136913795 + MLT1C LTR MaLR 6 465 -2 327 277 40 33 chr11 11869731 11869894 -136913578 - MIR SINE MIR -62 146 9 869 220 165 20 chr11 11870358 11870613 -136912859 + AluSg SINE Alu 1 292 -8 1576 167 7 7 chr11 11870622 11870909 -136912563 - AluJb SINE Alu -25 287 1 296 290 72 83 chr11 11871153 11871429 -136912043 - L1ME4a LINE L1 -244 5877 5605 1850 158 0 13 chr11 11871432 11871730 -136911742 - AluJb SINE Alu -18 294 1 2862 168 33 58 chr11 11871741 11872646 -136910826 - L1MB8 LINE L1 -2 6176 5217 1918 135 13 7 chr11 11872646 11872950 -136910522 - AluSx SINE Alu -6 306 1 2862 168 33 58 chr11 11872950 11873168 -136910304 - L1MB8 LINE L1 -961 5217 4995 1148 168 0 5 chr11 11873185 11873201 -136910271 + AluJb SINE Alu 118 133 -179 1597 132 48 44 chr11 11873201 11873496 -136909976 + AluSg SINE Alu 5 300 -10 1148 168 0 5 chr11 11873496 11873675 -136909797 + AluJb SINE Alu 133 312 0 1791 246 118 33 chr11 11873760 11874304 -136909168 - MLT1F1 LTR MaLR -2 565 2 287 199 80 119 chr11 11874359 11874510 -136908962 + MER5B DNA MER1_type 33 177 -1 198 0 0 0 chr11 11875329 11875351 -136908121 + (T)n Simple_repeat Simple_repeat 1 22 0 211 361 0 14 chr11 11875413 11875485 -136907987 + L2 LINE L2 3123 3193 -79 180 344 185 13 chr11 11875719 11876027 -136907445 - L3 LINE CR1 -114 1463 1103 2332 88 0 0 chr11 11876456 11876763 -136906709 + AluSg SINE Alu 1 307 -3 232 189 38 5 chr11 11878221 11878282 -136905190 + MIR SINE MIR 106 167 -41 510 313 53 31 chr11 11878677 11878904 -136904568 + MIR SINE MIR 19 250 -12 2128 102 7 10 chr11 11879990 11880293 -136903179 - AluSc SINE Alu -7 302 1 415 309 196 21 chr11 11880324 11880615 -136902857 - MLT1J2 LTR MaLR 0 450 109 2104 179 116 15 chr11 11880765 11881223 -136902249 + MLT1D LTR MaLR 1 504 -1 240 267 0 78 chr11 11881636 11881726 -136901746 + MIR SINE MIR 6 88 -174 1031 254 124 54 chr11 11881732 11882051 -136901421 - MLT1G1 LTR MaLR -1 578 219 774 162 0 22 chr11 11882051 11882187 -136901285 + FLAM_C SINE Alu 1 133 0 1031 254 124 54 chr11 11882187 11882423 -136901049 - MLT1G1 LTR MaLR -360 219 1 216 291 201 0 chr11 11882423 11882557 -136900915 + MIR SINE MIR 91 251 -11 203 321 0 37 chr11 11882550 11882631 -136900841 + L2 LINE L2 3199 3276 -37 * 1015 218 137 79 chr11 11882665 11883184 -136900288 - MLT1H LTR MaLR 0 549 1 305 279 89 32 chr11 11883329 11883487 -136899985 - MLT1L LTR MaLR -52 563 397 257 266 0 0 chr11 11883548 11883612 -136899860 - MLT1L LTR MaLR -343 272 209 1866 186 55 50 chr11 11883641 11884097 -136899375 - MLT1C LTR MaLR -5 462 5 183 129 0 0 chr11 11884173 11884204 -136899268 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 210 256 97 120 chr11 11885440 11885536 -136897936 + L2 LINE L2 2626 2723 -549 942 220 204 27 chr11 11885536 11885977 -136897495 + LTR33 LTR ERVL 3 521 0 210 256 97 120 chr11 11885977 11886032 -136897440 + L2 LINE L2 2723 2778 -494 1934 127 0 13 chr11 11886032 11886332 -136897140 + AluSq SINE Alu 1 296 -17 210 256 97 120 chr11 11886332 11886546 -136896926 + L2 LINE L2 2778 2981 -291 5915 101 7 1 chr11 11886566 11887396 -136896076 - L1PA10 LINE L1 -2 6166 5332 1655 132 18 0 chr11 11887395 11887676 -136895796 + L1PA10 LINE L1 5055 5340 -806 * 222 91 0 0 chr11 11887762 11887795 -136895677 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 13765 28 2 0 chr11 11888614 11890993 -136892479 - L1PA4 LINE L1 0 6155 3773 304 272 68 20 chr11 11891572 11891719 -136891753 + MLT1K LTR MaLR 402 555 -33 1424 237 27 29 chr11 11892090 11892503 -136890969 + L1ME3A LINE L1 5545 5956 -214 233 290 57 80 chr11 11892576 11892639 -136890833 + L1ME3A LINE L1 5988 6051 -119 2216 91 0 7 chr11 11892639 11892936 -136890536 - AluSx SINE Alu -17 295 1 233 290 57 80 chr11 11892936 11893048 -136890424 + L1ME3A LINE L1 6051 6159 -11 192 294 0 0 chr11 11893604 11893655 -136889817 + L2 LINE L2 3201 3251 -21 265 351 61 7 chr11 11895123 11895271 -136888201 + MIR3 SINE MIR 3 158 -50 988 156 18 6 chr11 11895671 11895838 -136887634 - FRAM SINE Alu -8 168 1 1652 200 74 56 chr11 11895870 11896330 -136887142 + MLT1H LTR MaLR 1 531 -24 1048 222 151 67 chr11 11896332 11896881 -136886591 - MLT1G1 LTR MaLR 0 595 1 236 203 0 81 chr11 11897067 11897141 -136886331 + MER117 DNA MER1_type 96 163 -34 1904 94 23 0 chr11 11897546 11897802 -136885670 + L1PA10 LINE L1 5905 6166 -2 650 119 0 10 chr11 11898461 11898562 -136884910 + AluSg/x SINE Alu 202 301 -9 1610 168 0 4 chr11 11898947 11899209 -136884263 - AluSx SINE Alu -49 263 3 267 312 0 11 chr11 11899614 11899707 -136883765 + CT-rich Low_complexity Low_complexity 5 96 0 206 125 0 25 chr11 11899709 11899749 -136883723 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 299 243 28 103 chr11 11899800 11899907 -136883565 + MIR SINE MIR 49 146 -62 300 298 81 0 chr11 11900508 11900632 -136882840 + MER117 DNA MER1_type 9 142 -55 342 318 109 22 chr11 11900844 11901165 -136882307 + L1M4 LINE L1 4504 4852 -1294 909 150 0 0 chr11 11901502 11901635 -136881837 + FLAM_C SINE Alu 1 133 0 935 90 0 0 chr11 11902232 11902354 -136881118 + AluSg SINE Alu 1 122 -188 303 109 87 0 chr11 11902378 11902516 -136880956 + (TA)n Simple_repeat Simple_repeat 1 150 0 1165 140 5 0 chr11 11902521 11902707 -136880765 + AluSq SINE Alu 127 313 0 602 289 7 0 chr11 11903789 11903941 -136879531 - MIR SINE MIR -25 237 85 237 273 203 75 chr11 11904059 11904246 -136879226 - L2 LINE L2 0 3272 3062 592 222 105 6 chr11 11904252 11904414 -136879058 - MER5B DNA MER1_type 0 178 1 2888 123 27 7 chr11 11904504 11904953 -136878519 - LTR32 LTR ERVL 0 471 14 566 295 134 42 chr11 11904969 11905372 -136878100 - MLT1K LTR MaLR -61 527 88 183 260 82 41 chr11 11905454 11905527 -136877945 - L2 LINE L2 -568 2746 2671 1723 151 7 7 chr11 11905537 11905829 -136877643 - AluSx SINE Alu -7 305 14 324 194 58 87 chr11 11905858 11905961 -136877511 + AluJ/FLAM SINE Alu 1 61 -241 890 164 7 7 chr11 11906077 11906229 -136877243 + FRAM SINE Alu 1 146 -30 270 339 194 25 chr11 11906234 11906749 -136876723 - L2 LINE L2 -685 2629 2202 1620 161 33 13 chr11 11906749 11907054 -136876418 + AluJb SINE Alu 1 311 -1 270 339 194 25 chr11 11907054 11907282 -136876190 - L2 LINE L2 -1112 2202 1761 741 129 26 0 chr11 11907444 11907560 -136875912 + L1MB5 LINE L1 5948 6066 -108 355 90 62 0 chr11 11907583 11907641 -136875831 + L1MB5 LINE L1 6042 6103 -71 1723 144 41 0 chr11 11907644 11907935 -136875537 - AluSx SINE Alu 0 302 1 389 311 135 7 chr11 11907937 11908085 -136875387 - MIR SINE MIR -80 182 16 426 268 143 12 chr11 11909288 11909456 -136874016 + MIR SINE MIR 13 202 -60 1423 280 101 21 chr11 11909501 11909995 -136873477 - MLT2F LTR ERVL 0 663 109 2164 116 0 0 chr11 11909995 11910297 -136873175 + AluSx SINE Alu 1 302 -10 1423 280 101 21 chr11 11910297 11910416 -136873056 - MLT2F LTR ERVL -554 109 1 256 253 11 66 chr11 11911091 11911182 -136872290 - L2 LINE L2 -1 3271 3186 1223 269 68 37 chr11 11911234 11911662 -136871810 - LTR16C LTR ERVL 0 491 51 585 311 145 12 chr11 11911701 11912039 -136871433 + MLT1K LTR MaLR 32 414 -174 348 291 0 0 chr11 11912456 11912542 -136870930 + L2 LINE L2 3227 3312 -1 350 308 64 19 chr11 11912752 11912908 -136870564 + MIR SINE MIR 2 164 -98 586 237 79 0 chr11 11913097 11913236 -136870236 - MIR SINE MIR -107 155 6 2398 115 0 0 chr11 11914836 11915173 -136868299 - AluSq SINE Alu 0 337 1 315 122 0 0 chr11 11915216 11915265 -136868207 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 2296 124 3 10 chr11 11915267 11915581 -136867891 - AluSx SINE Alu 0 312 1 240 163 0 0 chr11 11916238 11916281 -136867191 + CT-rich Low_complexity Low_complexity 2 44 0 1403 132 5 10 chr11 11916297 11916501 -136866971 - AluSx SINE Alu -107 205 3 601 251 86 11 chr11 11916926 11917113 -136866359 + MIR SINE MIR 10 210 -52 252 278 82 0 chr11 11917527 11917624 -136865848 - L2 LINE L2 -9 3263 3159 405 253 163 25 chr11 11919785 11919987 -136863485 - MIR SINE MIR -13 249 20 264 167 11 133 chr11 11921031 11921082 -136862390 - MIR SINE MIR -113 149 112 649 174 7 43 chr11 11921082 11921220 -136862252 + FLAM_C SINE Alu 1 133 0 264 167 11 133 chr11 11921220 11921258 -136862214 - MIR SINE MIR -150 112 71 1520 144 86 16 chr11 11921355 11921668 -136861804 + MER44D DNA MER2_type 3 607 -2 314 285 62 73 chr11 11921880 11922248 -136861224 - L1MC5 LINE L1 -41 7920 7557 855 188 8 0 chr11 11923303 11923436 -136860036 - AluJo SINE Alu -178 134 1 2303 96 13 7 chr11 11923792 11924095 -136859377 - AluY SINE Alu -6 305 1 234 0 0 0 chr11 11924169 11924195 -136859277 + (T)n Simple_repeat Simple_repeat 1 26 0 230 287 185 13 chr11 11926524 11926681 -136856791 + MIR SINE MIR 79 262 0 220 242 51 56 chr11 11927588 11927761 -136855711 - MIR3 SINE MIR 0 208 60 479 286 26 26 chr11 11929934 11930088 -136853384 + MIR SINE MIR 81 234 -28 2176 118 10 3 chr11 11930230 11930526 -136852946 - AluSx SINE Alu -14 298 1 335 310 0 10 chr11 11930761 11930861 -136852611 - L3 LINE CR1 -224 1353 1255 2217 234 96 10 chr11 11930868 11931548 -136851924 - HsTC2a DNA Tc2 -5 739 2 794 312 199 13 chr11 11931549 11932158 -136851314 - L3 LINE CR1 -319 1258 537 2307 80 0 7 chr11 11933081 11933370 -136850102 - AluSg SINE Alu -22 288 2 316 352 83 10 chr11 11933429 11933622 -136849850 + L1MC4a LINE L1 5870 6076 -1732 274 197 79 40 chr11 11934389 11934465 -136849007 - L2 LINE L2 -7 3265 3187 21 0 0 0 chr11 11934522 11934543 -136848929 + AT_rich Low_complexity Low_complexity 1 21 0 666 226 52 87 chr11 11935126 11935414 -136848058 - L2 LINE L2 0 3313 3036 510 259 20 27 chr11 11935691 11935838 -136847634 + MIR SINE MIR 108 253 -9 487 263 143 0 chr11 11936118 11936293 -136847179 - MIR SINE MIR -14 248 49 647 224 154 20 chr11 11936568 11936769 -136846703 + MIR SINE MIR 35 262 0 22 35 0 0 chr11 11936782 11936811 -136846661 + AT_rich Low_complexity Low_complexity 1 29 0 363 250 29 19 chr11 11937153 11937257 -136846215 - MIR SINE MIR -67 195 91 210 143 0 0 chr11 11937439 11937474 -136845998 + (T)n Simple_repeat Simple_repeat 1 35 0 1894 145 0 17 chr11 11937533 11937829 -136845643 - AluJo SINE Alu -19 293 3 2957 13 0 0 chr11 11938830 11939143 -136844329 + AluYb8 SINE Alu 1 313 -5 569 275 47 28 chr11 11939554 11939765 -136843707 + MIR SINE MIR 48 262 0 387 331 98 11 chr11 11939730 11939914 -136843558 - MIR SINE MIR -16 246 47 * 2264 114 13 0 chr11 11940892 11941200 -136842272 - AluSx SINE Alu 0 312 1 411 263 41 53 chr11 11941862 11942033 -136841439 + MIR SINE MIR 76 244 -18 316 217 0 0 chr11 11942465 11942534 -136840938 - MLT1K LTR MaLR -2 586 518 580 208 33 0 chr11 11942538 11942658 -136840814 + AluJo SINE Alu 13 136 -176 782 180 180 5 chr11 11943059 11943270 -136840202 - MIR SINE MIR -1 261 14 750 292 16 24 chr11 11943284 11943534 -136839938 - MIR SINE MIR -1 261 14 304 185 31 0 chr11 11943777 11943842 -136839630 - L2 LINE L2 0 3272 3206 398 301 76 59 chr11 11944069 11944305 -136839167 + MIR SINE MIR 3 242 -20 246 213 0 113 chr11 11944368 11944448 -136839024 - MIR3 SINE MIR -25 183 113 210 37 0 0 chr11 11945415 11945442 -136838030 + (TG)n Simple_repeat Simple_repeat 1 27 0 202 291 38 113 chr11 11946424 11946637 -136836835 + L2 LINE L2 3076 3272 0 233 336 52 15 chr11 11946878 11947012 -136836460 - MIR3 SINE MIR -41 167 29 336 282 118 20 chr11 11948042 11948237 -136835235 - MIR3 SINE MIR -46 216 3 223 220 0 0 chr11 11948258 11948308 -136835164 + L2 LINE L2 3263 3312 -1 326 323 27 48 chr11 11948997 11949183 -136834289 + MIR3 SINE MIR 5 186 -22 551 264 73 28 chr11 11949741 11949919 -136833553 - MIR3 SINE MIR -6 202 17 460 301 150 10 chr11 11950481 11950674 -136832798 - MIR SINE MIR -20 242 23 334 351 140 30 chr11 11950751 11951087 -136832385 - L2 LINE L2 -14 3258 2886 237 65 0 0 chr11 11951750 11951781 -136831691 + (GA)n Simple_repeat Simple_repeat 1 31 0 7060 45 7 0 chr11 11953829 11955042 -136828430 + L1PA5 LINE L1 4936 6154 0 289 216 81 0 chr11 11955142 11955216 -136828256 - L2 LINE L2 0 3272 3193 255 247 91 0 chr11 11955521 11955598 -136827874 + L2 LINE L2 3188 3271 -1 243 361 82 25 chr11 11955611 11955769 -136827703 - MER5B DNA MER1_type -1 177 11 631 253 19 0 chr11 11956710 11956868 -136826604 - MIR SINE MIR -74 188 28 485 337 93 51 chr11 11956907 11957686 -136825786 - L2 LINE L2 -257 3015 2205 279 319 58 5 chr11 11957777 11957965 -136825507 - L2 LINE L2 -1366 1948 1751 628 162 43 0 chr11 11958156 11958273 -136825199 + AluJb SINE Alu 188 309 -3 783 315 72 17 chr11 11959286 11959635 -136823837 - MLT1J2 LTR MaLR 0 450 83 2186 118 3 31 chr11 11959825 11960147 -136823325 + AluSq SINE Alu 1 313 0 1031 143 54 93 chr11 11960804 11960846 -136822626 - L1MB3 LINE L1 -9 6174 6132 1890 151 3 32 chr11 11960846 11961158 -136822314 - AluJo SINE Alu -9 303 1 1031 143 54 93 chr11 11961158 11961266 -136822206 - L1MB3 LINE L1 -51 6132 6036 1803 106 0 0 chr11 11961266 11961492 -136821980 - AluSg SINE Alu -21 289 64 1031 143 54 93 chr11 11961492 11961598 -136821874 - L1MB3 LINE L1 -147 6036 5927 787 260 104 12 chr11 11962258 11962596 -136820876 - L1ME4a LINE L1 -10 6111 5743 247 361 62 8 chr11 11962716 11962846 -136820626 + MIR SINE MIR 16 154 -54 21 57 0 0 chr11 11963071 11963106 -136820366 + AT_rich Low_complexity Low_complexity 1 35 0 231 232 0 0 chr11 11963116 11963172 -136820300 + (CA)n Simple_repeat Simple_repeat 1 56 0 214 254 0 34 chr11 11963175 11963234 -136820238 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 570 196 12 24 chr11 11963237 11963405 -136820067 + (CATA)n Simple_repeat Simple_repeat 2 167 0 299 305 195 11 chr11 11965664 11965838 -136817634 - MIR SINE MIR -36 226 21 1238 152 39 17 chr11 11965854 11966085 -136817387 + MER46A DNA MER2_type 1 236 0 1114 171 5 14 chr11 11966475 11966686 -136816786 + AluSx SINE Alu 3 211 -101 219 186 0 0 chr11 11966695 11966738 -136816734 + GA-rich Low_complexity Low_complexity 2 44 0 533 190 0 10 chr11 11967397 11967497 -136815975 + AluJb SINE Alu 2 100 -212 279 290 83 59 chr11 11968601 11968770 -136814702 - MIR SINE MIR -12 250 78 1027 285 72 42 chr11 11968999 11969427 -136814045 + LTR16C LTR ERVL 51 491 0 218 275 11 66 chr11 11969479 11969570 -136813902 + L2 LINE L2 3186 3271 -1 520 252 87 0 chr11 11972117 11972244 -136811228 + MIR SINE MIR 18 155 -107 374 308 64 19 chr11 11972433 11972589 -136810883 - MIR SINE MIR -98 164 2 306 309 0 0 chr11 11972799 11972883 -136810589 - L2 LINE L2 -1 3312 3229 237 65 0 0 chr11 11973656 11973687 -136809785 + (GA)n Simple_repeat Simple_repeat 1 31 0 683 295 68 0 chr11 11974177 11974384 -136809088 + L2 LINE L2 3093 3313 0 277 339 161 0 chr11 11974588 11974718 -136808754 + L2 LINE L2 3105 3255 -17 2058 111 3 46 chr11 11975856 11976180 -136807292 + AluSq SINE Alu 1 310 -3 513 272 12 58 chr11 11976336 11976509 -136806963 + MIR SINE MIR 42 206 -56 1107 181 5 0 chr11 11976643 11976853 -136806619 + AluJb SINE Alu 92 302 -10 369 265 58 155 chr11 11977018 11977309 -136806163 + L2 LINE L2 2985 3247 -25 540 205 26 8 chr11 11978222 11978339 -136805133 + L1MB5 LINE L1 5948 6066 -108 259 157 59 0 chr11 11978367 11978418 -136805054 + L1MB7 LINE L1 6049 6102 -82 1313 176 40 15 chr11 11978423 11978716 -136804756 - AluSx SINE Alu 0 302 3 404 309 128 7 chr11 11978720 11978869 -136804603 - MIR SINE MIR -80 182 16 384 312 32 25 chr11 11980223 11980380 -136803092 + MIR SINE MIR 81 238 -24 336 206 41 14 chr11 11980530 11980603 -136802869 - AluSg/x SINE Alu -15 287 213 360 115 0 33 chr11 11980704 11980765 -136802707 + Alu SINE Alu 242 300 0 243 242 32 89 chr11 11981212 11981336 -136802136 + MLT1K LTR MaLR 411 527 -61 2336 183 27 7 chr11 11981352 11981801 -136801671 + LTR32 LTR ERVL 14 471 0 344 286 110 13 chr11 11981898 11982052 -136801420 + MER5B DNA MER1_type 8 176 -2 1191 197 32 12 chr11 11982181 11982430 -136801042 + MER61B LTR ERV1 172 425 0 243 273 124 8 chr11 11982558 11982679 -136800793 + LTR16A LTR ERVL 316 450 0 414 242 11 11 chr11 11982685 11982780 -136800692 - L2 LINE L2 -33 3280 3186 356 187 51 23 chr11 11982840 11982927 -136800545 + MLT1J LTR MaLR 239 411 -195 1140 197 87 3 chr11 11982927 11983226 -136800246 + MER33 DNA MER1_type 1 324 0 230 310 164 14 chr11 11983976 11984189 -136799283 - L1MC4a LINE L1 -1694 6114 5870 2103 87 0 7 chr11 11984248 11984537 -136798935 + AluSg SINE Alu 2 288 -22 1791 141 0 10 chr11 11985749 11986046 -136797426 + AluSx SINE Alu 2 295 -17 1315 249 27 29 chr11 11986182 11986595 -136796877 - L1ME3A LINE L1 -214 5956 5545 254 279 54 41 chr11 11986969 11987116 -136796356 - MLT1K LTR MaLR -38 550 402 771 304 77 23 chr11 11988109 11988458 -136795014 - MLT1J2 LTR MaLR 0 450 83 2083 112 3 31 chr11 11988648 11988970 -136794502 + AluSq SINE Alu 1 313 0 549 161 0 85 chr11 11989627 11989669 -136793803 - L1MB3 LINE L1 -9 6174 6130 1415 189 3 32 chr11 11989669 11989981 -136793491 - AluJo SINE Alu -9 303 1 549 161 0 85 chr11 11989981 11990068 -136793404 - L1MB3 LINE L1 -53 6130 6056 1333 140 0 18 chr11 11990089 11990318 -136793154 - AluSg/x SINE Alu -21 289 65 519 211 0 0 chr11 11990321 11990425 -136793047 - L1MB3 LINE L1 -153 6030 5927 1469 190 0 0 chr11 11990977 11991251 -136792221 + AluSx SINE Alu 3 276 -36 329 314 120 23 chr11 11992267 11992442 -136791030 + MIR SINE MIR 47 238 -24 * 496 284 53 21 chr11 11992437 11992627 -136790845 - MIR SINE MIR -19 243 48 2498 45 0 0 chr11 11993040 11993349 -136790123 - AluYb8 SINE Alu -7 311 3 524 304 179 9 chr11 11994560 11994784 -136788688 - MIR SINE MIR 0 262 1 287 281 0 0 chr11 11995140 11995197 -136788275 - L2 LINE L2 -16 3297 3241 205 205 26 0 chr11 11995990 11996029 -136787443 + L2 LINE L2 3255 3294 -19 587 304 78 0 chr11 11996677 11996881 -136786591 - MIR SINE MIR -14 248 29 914 240 86 5 chr11 11996933 11997154 -136786318 + MER8 DNA MER2_type 1 239 0 185 322 192 7 chr11 11999235 11999381 -136784091 + MIR SINE MIR 79 251 -11 520 257 22 22 chr11 11999906 12000042 -136783430 + MIR SINE MIR 16 151 -111 1522 157 39 0 chr11 12000042 12000297 -136783175 + MER2 DNA MER2_type 1 265 -80 381 271 119 46 chr11 12000435 12000586 -136782886 - MIR SINE MIR -34 228 67 1035 250 135 20 chr11 12000805 12001244 -136782228 + L2 LINE L2 2649 3036 -277 188 29 0 88 chr11 12001244 12001278 -136782194 + (CA)n Simple_repeat Simple_repeat 2 32 0 1035 250 135 20 chr11 12001278 12001302 -136782170 + L2 LINE L2 3036 3056 -257 195 42 0 0 chr11 12001302 12001326 -136782146 + (TC)n Simple_repeat Simple_repeat 1 24 0 1035 250 135 20 chr11 12001326 12001360 -136782112 + L2 LINE L2 3056 3085 -228 2151 120 0 0 chr11 12001360 12001668 -136781804 - AluSx SINE Alu -2 310 3 1035 250 135 20 chr11 12001668 12001730 -136781742 + L2 LINE L2 3085 3138 -175 1538 193 3 7 chr11 12001730 12002025 -136781447 - AluJb SINE Alu -18 294 1 1035 250 135 20 chr11 12002025 12002051 -136781421 + L2 LINE L2 3138 3313 0 2657 184 62 17 chr11 12002100 12002683 -136780789 + L1MB3 LINE L1 5568 6176 -7 644 177 14 14 chr11 12002701 12002842 -136780630 + Charlie5 DNA MER1_type 2238 2378 -234 1359 206 0 4 chr11 12003205 12003467 -136780005 + AluSx SINE Alu 3 263 -49 661 117 0 10 chr11 12003852 12003955 -136779517 - AluSg/x SINE Alu -9 301 200 1676 132 19 4 chr11 12004613 12004871 -136778601 - L1PA10 LINE L1 -2 6166 5905 236 203 0 81 chr11 12005278 12005352 -136778120 - MER117 DNA MER1_type -34 163 96 842 244 147 65 chr11 12005538 12006088 -136777384 + MLT1G1 LTR MaLR 1 595 0 804 184 81 10 chr11 12006316 12006541 -136776931 - MER61B LTR ERV1 -97 328 1 26 74 0 0 chr11 12006663 12006717 -136776755 + AT_rich Low_complexity Low_complexity 1 54 0 1461 226 33 19 chr11 12007170 12007532 -136775940 - L1MB4 LINE L1 -1 6179 5813 1399 134 61 4 chr11 12007535 12007812 -136775660 - Charlie5 DNA MER1_type -82 2530 2238 2674 174 58 28 chr11 12007818 12008416 -136775056 - L1MB3 LINE L1 0 6183 5568 248 157 135 90 chr11 12008465 12008491 -136774981 - L2 LINE L2 0 3313 3290 1242 235 3 3 chr11 12008491 12008785 -136774687 + AluJb SINE Alu 1 294 -18 248 157 135 90 chr11 12008785 12008847 -136774625 - L2 LINE L2 -23 3290 3221 1695 140 0 4 chr11 12008847 12009111 -136774361 + AluSq SINE Alu 3 265 -48 1049 131 0 0 chr11 12009313 12009473 -136773999 + FRAM SINE Alu 1 40 0 426 249 186 70 chr11 12009738 12009875 -136773597 - L1MC4a LINE L1 -1906 5902 5782 2050 112 0 0 chr11 12009875 12010175 -136773297 - AluSg SINE Alu 0 305 6 426 249 186 70 chr11 12010175 12010381 -136773091 - L1MC4a LINE L1 -2026 5782 5518 1695 157 3 0 chr11 12010679 12010965 -136772507 + AluJb SINE Alu 16 302 -10 435 253 58 154 chr11 12011130 12011422 -136772050 + L2 LINE L2 2985 3248 -24 1281 174 87 3 chr11 12012270 12012569 -136770903 - MER33 DNA MER1_type 0 324 1 356 187 51 23 chr11 12012569 12012656 -136770816 - MLT1J LTR MaLR -195 316 239 442 232 11 11 chr11 12012715 12012810 -136770662 + L2 LINE L2 3186 3280 -33 261 273 116 0 chr11 12012816 12012937 -136770535 - LTR16A LTR ERVL 0 450 316 696 159 8 8 chr11 12013065 12013191 -136770281 - MER61A LTR ERV1 0 343 218 942 235 25 42 chr11 12013812 12013972 -136769500 - MIR SINE MIR -25 237 81 1879 151 10 7 chr11 12013972 12014264 -136769208 + AluJb SINE Alu 6 298 -14 942 235 25 42 chr11 12014264 12014341 -136769131 - MIR SINE MIR -181 81 4 271 301 160 0 chr11 12015583 12015711 -136767761 - MIR SINE MIR -67 141 2 426 245 10 0 chr11 12015783 12015885 -136767587 - Charlie4a DNA MER1_type 0 508 406 927 188 35 99 chr11 12015910 12016192 -136767280 - Charlie4a DNA MER1_type -206 302 39 2208 111 3 49 chr11 12016803 12017128 -136766344 + AluSq SINE Alu 1 310 -3 512 272 12 58 chr11 12017285 12017458 -136766014 + MIR SINE MIR 42 206 -56 267 367 85 19 chr11 12017819 12018078 -136765394 - L2 LINE L2 -1303 2011 1736 1061 107 0 0 chr11 12019181 12019321 -136764151 + AluJb SINE Alu 156 295 -17 2560 107 43 36 chr11 12019340 12019779 -136763693 + MER4D LTR ERV1 457 898 -5 946 192 93 10 chr11 12019797 12020127 -136763345 - MER21B LTR ERV1 -467 396 3 209 228 0 35 chr11 12020140 12020197 -136763275 - L2 LINE L2 -1034 2280 2226 4385 157 27 29 chr11 12020357 12021558 -136761914 + L1MB3 LINE L1 4958 6157 -26 327 270 35 61 chr11 12021621 12021736 -136761736 - MIR SINE MIR -34 228 117 356 204 86 0 chr11 12022033 12022126 -136761346 + L2 LINE L2 2693 2793 -521 498 181 0 0 chr11 12022265 12022370 -136761102 + (TGGA)n Simple_repeat Simple_repeat 4 108 0 192 250 0 0 chr11 12022379 12022415 -136761057 - L2 LINE L2 -46 3267 3232 183 80 0 0 chr11 12023358 12023383 -136760089 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr11 12023636 12023665 -136759807 + AT_rich Low_complexity Low_complexity 1 29 0 226 214 0 0 chr11 12023725 12023767 -136759705 + MIR SINE MIR 110 151 -111 241 268 12 24 chr11 12024218 12024300 -136759172 + CT-rich Low_complexity Low_complexity 2 82 0 1336 167 53 17 chr11 12025164 12025463 -136758009 + MER33 DNA MER1_type 5 314 -10 1015 195 14 32 chr11 12025463 12025684 -136757788 + MER20 DNA MER1_type 1 217 -2 544 238 107 42 chr11 12025810 12025978 -136757494 + MIR SINE MIR 84 262 0 221 0 35 0 chr11 12026401 12026430 -136757042 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 248 356 70 0 chr11 12026430 12026545 -136756927 + L2 LINE L2 3150 3272 0 440 302 68 29 chr11 12027835 12028040 -136755432 + MIR SINE MIR 12 224 -38 180 0 0 0 chr11 12028104 12028124 -136755348 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 677 291 73 45 chr11 12028129 12028287 -136755185 - L2 LINE L2 -4 3309 3157 2284 108 0 23 chr11 12028287 12028592 -136754880 + AluSx SINE Alu 1 298 -14 677 291 73 45 chr11 12028592 12028605 -136754867 - L2 LINE L2 -156 3157 3146 2079 126 0 11 chr11 12028605 12028891 -136754581 + AluJb SINE Alu 20 302 -10 677 291 73 45 chr11 12028891 12029076 -136754396 - L2 LINE L2 -167 3146 2942 191 35 0 35 chr11 12029141 12029170 -136754302 + (CCCCCA)n Simple_repeat Simple_repeat 4 31 0 303 143 36 0 chr11 12029226 12029282 -136754190 + MER58 DNA MER1_type 2348 2405 -15 2260 105 0 14 chr11 12029601 12029897 -136753575 + AluSx SINE Alu 6 297 -15 490 291 33 39 chr11 12029943 12030125 -136753347 - MIR SINE MIR -8 254 74 189 319 51 0 chr11 12030724 12030802 -136752670 + MIR SINE MIR 17 99 -109 454 315 199 19 chr11 12030802 12031018 -136752454 + MIR SINE MIR 4 258 -4 329 255 101 60 chr11 12031011 12031160 -136752312 + MIR SINE MIR 92 246 -16 * 857 242 13 17 chr11 12031389 12031620 -136751852 + AluSg SINE Alu 56 285 -25 21 0 0 0 chr11 12031620 12031641 -136751831 + AT_rich Low_complexity Low_complexity 1 21 0 323 288 73 101 chr11 12031654 12031942 -136751530 + L1MC4a LINE L1 5775 6054 -1754 1127 131 0 0 chr11 12032041 12032201 -136751271 - FRAM SINE Alu 0 40 1 366 263 0 0 chr11 12032365 12032479 -136750993 + (TA)n Simple_repeat Simple_repeat 1 114 0 696 173 27 11 chr11 12032479 12032869 -136750603 + (TG)n Simple_repeat Simple_repeat 1 396 0 745 203 0 0 chr11 12032869 12032997 -136750475 - FLAM_C SINE Alu -14 129 2 752 255 10 25 chr11 12034301 12034497 -136748975 - MIR SINE MIR -1 261 69 269 250 0 0 chr11 12034496 12034552 -136748920 + L2 LINE L2 3256 3311 -2 * 257 303 20 10 chr11 12034752 12034851 -136748621 + MIR3 SINE MIR 96 195 -13 194 271 21 0 chr11 12035329 12035377 -136748095 + L2 LINE L2 3217 3265 -7 2411 98 0 13 chr11 12035849 12036165 -136747307 - AluSx SINE Alu 0 312 1 274 268 303 7 chr11 12038159 12038301 -136745171 + MIR SINE MIR 77 260 -2 21 0 0 0 chr11 12041449 12041470 -136742002 + AT_rich Low_complexity Low_complexity 1 21 0 1651 151 56 40 chr11 12041930 12042234 -136741238 + AluJo SINE Alu 1 309 -3 328 259 100 118 chr11 12042263 12042483 -136740989 + L1MC4 LINE L1 7826 8041 -1 1981 279 132 9 chr11 12042702 12043543 -136739929 - L2 LINE L2 -338 2976 2033 188 132 0 26 chr11 12043741 12043779 -136739693 + (TC)n Simple_repeat Simple_repeat 1 37 0 403 328 54 12 chr11 12044163 12044387 -136739085 + MIR SINE MIR 30 262 0 201 171 0 0 chr11 12044388 12044423 -136739049 + (TTA)n Simple_repeat Simple_repeat 2 36 0 557 269 130 23 chr11 12045086 12045302 -136738170 + MIR SINE MIR 14 252 -10 329 292 10 10 chr11 12045995 12046091 -136737381 + MIR SINE MIR 19 114 -148 617 230 93 0 chr11 12046117 12046256 -136737216 + MIR SINE MIR 89 240 -22 223 333 13 0 chr11 12047018 12047096 -136736376 - L2 LINE L2 -9 3304 3226 2351 91 0 10 chr11 12048787 12049085 -136734387 + AluSp SINE Alu 1 295 -18 931 254 45 0 chr11 12049273 12049493 -136733979 + MIR SINE MIR 28 257 -5 239 376 32 38 chr11 12049513 12049670 -136733802 + L2 LINE L2 3031 3186 -86 4227 166 62 8 chr11 12049736 12050823 -136732649 - L1MB7 LINE L1 0 6184 5034 195 258 146 30 chr11 12050831 12050966 -136732506 - MIR3 SINE MIR -75 133 2 211 325 0 36 chr11 12050972 12051055 -136732417 + L2 LINE L2 3193 3272 0 534 290 0 8 chr11 12051588 12051719 -136731753 + L2 LINE L2 3143 3272 0 196 236 18 18 chr11 12051929 12051984 -136731488 - L2 LINE L2 -557 2757 2703 1265 191 86 0 chr11 12052268 12052488 -136730984 - MER8 DNA MER2_type 0 239 1 648 294 78 0 chr11 12052540 12052744 -136730728 + MIR SINE MIR 29 248 -14 205 205 26 0 chr11 12053393 12053432 -136730040 - L2 LINE L2 -19 3294 3255 241 150 0 0 chr11 12054713 12054753 -136728719 - L2 LINE L2 -2 3270 3231 609 326 26 0 chr11 12055863 12056053 -136727419 - MIR SINE MIR -34 228 34 271 226 108 29 chr11 12056858 12056960 -136726512 - MIR SINE MIR -144 118 9 926 209 22 6 chr11 12057190 12057372 -136726100 + MER5A DNA MER1_type 5 189 0 216 0 0 0 chr11 12057949 12057973 -136725499 + (TG)n Simple_repeat Simple_repeat 1 24 0 796 228 179 8 chr11 12057975 12058243 -136725229 - MER58B DNA MER1_type -27 314 1 735 280 68 0 chr11 12058617 12058824 -136724648 + L2 LINE L2 3093 3313 0 257 323 141 0 chr11 12059058 12059157 -136724315 + L2 LINE L2 3143 3255 -17 996 97 18 24 chr11 12060052 12060217 -136723255 + MLT1C LTR MaLR 28 191 -276 216 0 0 0 chr11 12060295 12060319 -136723153 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1071 174 9 43 chr11 12060321 12060551 -136722921 - AluJb SINE Alu -31 281 60 1957 152 30 3 chr11 12060603 12060933 -136722539 + LTR32 LTR ERVL 14 352 -119 804 166 26 7 chr11 12060978 12061129 -136722343 + LTR32 LTR ERVL 318 471 0 2399 97 0 3 chr11 12061388 12061699 -136721773 - AluSx SINE Alu -2 310 1 831 239 44 5 chr11 12061797 12062002 -136721470 + MER20 DNA MER1_type 7 219 0 181 282 26 51 chr11 12062792 12062870 -136720602 + MIR SINE MIR 184 259 -3 269 263 33 25 chr11 12062894 12063012 -136720460 - MIR SINE MIR -50 212 94 257 188 0 0 chr11 12164996 12165044 -136618428 - Alu SINE Alu -252 48 1 2379 87 17 7 chr11 12165633 12165932 -136617540 - AluSq SINE Alu -11 302 1 719 196 94 86 chr11 12166195 12166440 -136617032 + MIR SINE MIR 2 248 -14 203 204 19 19 chr11 12166440 12166494 -136616978 + (CATAC)n Simple_repeat Simple_repeat 5 58 0 2078 134 0 0 chr11 12167206 12167513 -136615959 - AluSx SINE Alu 0 307 1 618 85 0 0 chr11 12170095 12170189 -136613283 + (TC)n Simple_repeat Simple_repeat 1 94 0 213 39 0 0 chr11 12171086 12171112 -136612360 + (T)n Simple_repeat Simple_repeat 1 26 0 421 318 62 26 chr11 12171261 12171456 -136612016 - MIR SINE MIR -14 248 47 353 336 7 0 chr11 12171827 12171964 -136611508 - MIR SINE MIR -13 249 112 697 133 0 0 chr11 12172065 12172170 -136611302 - AluSq/x SINE Alu -207 106 2 434 265 10 10 chr11 12172171 12172269 -136611203 - MER2 DNA MER2_type -247 98 1 * 581 191 0 0 chr11 12172269 12172383 -136611089 + MER2 DNA MER2_type 97 210 -135 24 32 0 0 chr11 12172393 12172424 -136611048 + AT_rich Low_complexity Low_complexity 1 31 0 261 318 12 35 chr11 12172537 12172622 -136610850 - L2 LINE L2 0 3313 3231 200 313 127 55 chr11 12173217 12173492 -136609980 - L2 LINE L2 -13 3259 2965 314 290 235 5 chr11 12173553 12173753 -136609719 + MIR SINE MIR 5 250 -12 819 316 178 27 chr11 12173770 12174890 -136608582 - L3 LINE CR1 -5 1572 284 2315 67 6 35 chr11 12174896 12175211 -136608261 - AluY SINE Alu 0 311 6 18891 67 13 1 chr11 12175311 12177947 -136605525 - L1P2 LINE L1 -608 5546 2882 306 194 0 30 chr11 12178048 12178115 -136605357 - Tigger7 DNA MER2_type -668 65 1 1988 148 7 0 chr11 12178160 12178463 -136605009 - AluSx SINE Alu -6 306 2 323 288 55 43 chr11 12178485 12178648 -136604824 + MIR SINE MIR 48 212 -50 286 329 30 18 chr11 12178770 12178934 -136604538 - MIR SINE MIR -3 259 94 434 271 33 0 chr11 12179259 12179381 -136604091 + L2 LINE L2 3188 3313 0 22267 39 3 0 chr11 12181154 12183833 -136599639 - L1P LINE L1 -2836 3310 623 756 56 0 0 chr11 12183833 12183922 -136599550 - L1P LINE L1 -6050 96 8 416 222 0 0 chr11 12183926 12183998 -136599474 + MER2 DNA MER2_type 274 345 0 1307 282 75 26 chr11 12183998 12184691 -136598781 + L1ME3 LINE L1 5225 5954 -208 416 39 0 0 chr11 12185467 12185518 -136597954 - L1P LINE L1 -2352 3794 3744 2298 110 0 0 chr11 12185647 12185946 -136597526 + AluSg SINE Alu 1 299 -11 18185 128 19 16 chr11 12185956 12188257 -136595215 + L1PA4 LINE L1 13 2324 -3822 216 0 0 0 chr11 12188257 12188281 -136595191 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 18185 128 19 16 chr11 12188281 12188841 -136594631 + L1PA4 LINE L1 2324 2881 -3265 16981 36 3 4 chr11 12188941 12191722 -136591750 + L1PA4 LINE L1 3370 6152 -3 1783 171 3 0 chr11 12191738 12192025 -136591447 - MER2 DNA MER2_type -57 288 1 356 299 17 0 chr11 12192099 12192237 -136591235 - L1M4 LINE L1 -1100 5046 4906 1201 254 64 34 chr11 12192351 12192917 -136590555 - L1M4 LINE L1 -1704 4442 3860 622 260 54 31 chr11 12193388 12193657 -136589815 + LTR40c LTR ERVL 154 464 -55 407 275 133 33 chr11 12194337 12194548 -136588924 - MIR SINE MIR -10 252 21 339 270 70 0 chr11 12195905 12196005 -136587467 + MIR SINE MIR 49 155 -107 2074 126 10 7 chr11 12196196 12196490 -136586982 - AluSx SINE Alu -17 295 1 2403 74 3 16 chr11 12197346 12197658 -136585814 - AluY SINE Alu -3 308 1 201 182 23 0 chr11 12198260 12198304 -136585168 - L2 LINE L2 0 3313 3269 764 167 0 22 chr11 12198401 12198539 -136584933 - MER119 DNA MER1_type -1 582 448 397 218 178 0 chr11 12198544 12198645 -136584827 - MER119 DNA MER1_type -462 121 3 2304 90 3 3 chr11 12198760 12199050 -136584422 + AluSq SINE Alu 9 298 -15 238 150 17 17 chr11 12200931 12200991 -136582481 + GA-rich Low_complexity Low_complexity 1 60 0 424 302 161 0 chr11 12202107 12202299 -136581173 + MIR SINE MIR 28 250 -12 22 0 0 0 chr11 12202909 12202931 -136580541 + AT_rich Low_complexity Low_complexity 1 22 0 284 332 65 32 chr11 12202953 12203200 -136580272 - MIR SINE MIR -7 255 1 889 179 25 46 chr11 12203766 12203962 -136579510 - MER3 DNA MER1_type -4 205 14 2222 129 0 0 chr11 12205221 12205530 -136577942 - AluSx SINE Alu -3 309 1 1879 142 43 58 chr11 12205557 12205951 -136577521 - MLT1B LTR MaLR 0 390 3 267 114 0 0 chr11 12207544 12207579 -136575893 + U2 snRNA snRNA 1 35 -153 315 266 32 40 chr11 12207784 12207908 -136575564 + MIR SINE MIR 59 181 -81 449 278 31 41 chr11 12208031 12208225 -136575247 + MIR SINE MIR 59 250 -12 397 308 57 106 chr11 12208258 12208625 -136574847 - L2 LINE L2 -8 3264 2916 257 247 181 24 chr11 12210885 12211051 -136572421 + MIR SINE MIR 71 262 0 2243 112 3 0 chr11 12211350 12211645 -136571827 - AluSx SINE Alu -16 296 1 1472 266 54 37 chr11 12211696 12212889 -136570583 + L1MEc LINE L1 46 4627 -1588 * 1897 222 49 86 chr11 12212875 12213698 -136569774 + L1M4 LINE L1 2132 2923 -3223 273 114 0 0 chr11 12213705 12213740 -136569732 - Alu SINE Alu -15 285 251 573 241 64 15 chr11 12213740 12213943 -136569529 + L1M4 LINE L1 2908 3120 -3026 * 1421 264 55 77 chr11 12213915 12214370 -136569102 + L1MEc LINE L1 1479 1943 -4272 2431 63 0 26 chr11 12214370 12214673 -136568799 + AluY SINE Alu 1 295 -16 1421 264 55 77 chr11 12214673 12215172 -136568300 + L1MEc LINE L1 1943 2368 -3847 198 0 0 0 chr11 12215172 12215194 -136568278 + (A)n Simple_repeat Simple_repeat 1 22 0 1421 264 55 77 chr11 12215194 12215709 -136567763 + L1MEc LINE L1 2368 2893 -3322 3411 138 28 32 chr11 12215730 12215967 -136567505 + MER39B LTR ERV1 48 284 -369 2374 66 3 10 chr11 12215967 12216271 -136567201 - AluY SINE Alu -9 302 1 3411 138 28 32 chr11 12216271 12216633 -136566839 + MER39B LTR ERV1 284 645 -8 1583 257 82 51 chr11 12216641 12217450 -136566022 + L1MEc LINE L1 2929 3773 -2442 1802 116 31 57 chr11 12217450 12217726 -136565746 + AluSg SINE Alu 1 269 -41 252 0 0 0 chr11 12217726 12217754 -136565718 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1802 116 31 57 chr11 12217754 12217795 -136565677 + AluSg SINE Alu 269 310 0 1583 257 82 51 chr11 12217795 12217942 -136565530 + L1MEc LINE L1 3773 3914 -2301 * 7050 137 21 20 chr11 12217924 12219867 -136563605 + L1MA4 LINE L1 4179 6120 -249 1575 273 71 50 chr11 12219967 12222028 -136561444 - L1MC/D LINE L1 -748 5398 3694 23 33 0 0 chr11 12222512 12222542 -136560930 + AT_rich Low_complexity Low_complexity 1 30 0 1585 230 24 60 chr11 12222727 12222995 -136560477 - L1ME3 LINE L1 -2 6160 5884 2404 175 80 95 chr11 12222995 12223072 -136560400 + MLT1E1 LTR MaLR 1 78 -576 2044 139 3 0 chr11 12223072 12223366 -136560106 + AluSq SINE Alu 1 295 -18 2404 175 80 95 chr11 12223366 12223952 -136559520 + MLT1E1 LTR MaLR 78 654 0 1585 230 24 60 chr11 12223952 12223994 -136559478 - L1ME3 LINE L1 -278 5884 5842 2958 68 3 3 chr11 12223994 12224349 -136559123 - THE1A LTR MaLR 0 355 1 1585 230 24 60 chr11 12224349 12224571 -136558901 - L1ME3 LINE L1 -320 5842 5646 3238 188 6 30 chr11 12224571 12225204 -136558268 - MER67B LTR ERV1 0 661 44 477 167 48 0 chr11 12225238 12225322 -136558150 - MER67A LTR ERV1 -446 97 10 1367 218 30 52 chr11 12225327 12225732 -136557740 - L1ME3 LINE L1 -513 5649 5237 666 206 110 19 chr11 12225732 12225887 -136557585 - FAM SINE Alu -6 169 1 1367 218 30 52 chr11 12225887 12225930 -136557542 - L1ME3 LINE L1 -925 5237 5195 2020 137 70 20 chr11 12225930 12226287 -136557185 - THE1C LTR MaLR 0 375 1 1367 218 30 52 chr11 12226287 12226363 -136557109 - L1ME3 LINE L1 -967 5195 5054 1037 105 105 6 chr11 12226378 12226559 -136556913 + Charlie5 DNA MER1_type 1 199 -2413 523 222 0 0 chr11 12226558 12226666 -136556806 + Charlie5 DNA MER1_type 2352 2459 -153 * 582 200 77 7 chr11 12226692 12226847 -136556625 - L1M4 LINE L1 -743 5403 5238 1228 203 34 0 chr11 12226847 12227113 -136556359 + AluJo SINE Alu 33 307 -5 571 113 99 28 chr11 12227113 12227255 -136556217 + Charlie5 DNA MER1_type 2473 2624 0 1202 245 70 45 chr11 12227259 12227408 -136556064 - L1M4 LINE L1 -1107 5039 4895 2262 90 0 14 chr11 12227408 12227697 -136555775 + AluSp SINE Alu 1 285 -28 513 0 0 0 chr11 12227697 12227754 -136555718 + (CA)n Simple_repeat Simple_repeat 2 58 0 1202 245 70 45 chr11 12227754 12228089 -136555383 - L1M4 LINE L1 -1250 4896 4542 1762 153 55 15 chr11 12228089 12228162 -136555310 - MER44D DNA MER2_type -1882 609 540 1937 147 50 68 chr11 12228162 12228544 -136554928 - THE1C LTR MaLR 0 375 1 1762 153 55 15 chr11 12228544 12228796 -136554676 - MER44D DNA MER2_type -1951 540 1 374 222 99 19 chr11 12228800 12228962 -136554510 - L1M4 LINE L1 -1607 4539 4365 241 286 12 0 chr11 12228974 12229058 -136554414 - L1ME3 LINE L1 -1588 4558 4474 436 183 147 84 chr11 12229128 12229319 -136554153 - L1ME3A LINE L1 -20 6150 5948 271 294 49 35 chr11 12229332 12229475 -136553997 - L1ME3A LINE L1 -289 5881 5737 4867 212 52 26 chr11 12229512 12230937 -136552535 - L1ME1 LINE L1 -2 6164 4664 1936 147 10 32 chr11 12230937 12231249 -136552223 - AluJo SINE Alu -7 305 1 4867 212 52 26 chr11 12231249 12232051 -136551421 - L1ME1 LINE L1 -1502 4664 3884 1546 204 87 45 chr11 12233571 12234017 -136549455 - MLT1C LTR MaLR -2 465 1 1217 173 27 32 chr11 12234108 12234328 -136549144 + MER20 DNA MER1_type 1 219 0 2243 111 10 0 chr11 12234587 12234884 -136548588 - AluSx SINE Alu -12 300 1 310 345 110 45 chr11 12235049 12235249 -136548223 - L2 LINE L2 -15 3257 3045 930 268 59 13 chr11 12235446 12235752 -136547720 - LTR16B LTR ERVL -4 460 141 203 334 149 20 chr11 12236039 12236395 -136547077 + L2 LINE L2 1914 2315 -999 2181 99 20 0 chr11 12236991 12237285 -136546187 + AluSq SINE Alu 1 300 -13 995 141 53 12 chr11 12237285 12237455 -136546017 + AluSg/x SINE Alu 134 310 -2 264 236 66 75 chr11 12238479 12238585 -136544887 - MIR SINE MIR -63 145 41 2241 109 0 3 chr11 12240353 12240657 -136542815 + AluSg SINE Alu 1 303 -7 206 237 0 0 chr11 12242877 12242915 -136540557 + polypyrimidine Low_complexity Low_complexity 2 39 0 1709 144 3 80 chr11 12244845 12245158 -136538314 - AluJb SINE Alu -23 289 1 1728 218 73 18 chr11 12245163 12245691 -136537781 - L1ME3A LINE L1 -8 6162 5582 332 313 80 18 chr11 12245695 12245807 -136537665 - MIR SINE MIR -62 146 28 811 195 133 17 chr11 12246250 12246433 -136537039 - MER5C DNA MER1_type -55 269 50 4156 83 0 12 chr11 12246433 12246950 -136536522 + MER9 LTR ERVK 1 511 0 811 195 133 17 chr11 12246950 12247007 -136536465 - MER5C DNA MER1_type -274 50 1 1267 202 132 60 chr11 12247117 12247588 -136535884 + MER110A LTR ERV1 11 491 0 487 273 60 33 chr11 12247853 12248003 -136535469 + MER5A DNA MER1_type 36 189 0 337 253 13 13 chr11 12248010 12248085 -136535387 - MIR SINE MIR -55 153 79 21 0 0 0 chr11 12248327 12248348 -136535124 + AT_rich Low_complexity Low_complexity 1 21 0 210 91 0 0 chr11 12249691 12249724 -136533748 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 316 275 88 114 chr11 12250084 12250426 -136533046 + L1M2 LINE L1 776 1108 -5741 186 43 0 0 chr11 12250793 12250816 -136532656 + (T)n Simple_repeat Simple_repeat 1 23 0 970 189 87 33 chr11 12250969 12251054 -136532418 - L1MA4 LINE L1 -5 6295 6216 4427 78 5 7 chr11 12251054 12251605 -136531867 - MER41A LTR ERV1 -4 550 1 970 189 87 33 chr11 12251605 12251794 -136531678 - L1MA4 LINE L1 -84 6216 6006 937 282 95 37 chr11 12252280 12252383 -136531089 - L3 LINE CR1 -323 1254 1158 1225 262 84 25 chr11 12252383 12252872 -136530600 - LTR33 LTR ERVL -1 520 3 937 282 95 37 chr11 12252872 12253233 -136530239 - L3 LINE CR1 -419 1158 763 1446 146 75 4 chr11 12253736 12253976 -136529496 - Tigger2 DNA MER2_type -1 2717 2461 4515 139 23 18 chr11 12254021 12254760 -136528712 - Tigger2 DNA MER2_type -1974 744 2 668 284 57 9 chr11 12254911 12255122 -136528350 + MIR SINE MIR 16 236 -26 367 158 0 0 chr11 12255892 12255949 -136527523 - FLAM SINE Alu -8 125 69 * 829 186 18 6 chr11 12255946 12256113 -136527359 - Tigger2 DNA MER2_type -2545 173 5 1415 277 40 55 chr11 12256557 12257276 -136526196 - L2 LINE L2 -1 3312 2610 1872 149 27 0 chr11 12257276 12257571 -136525901 + AluJo SINE Alu 1 303 -9 1415 277 40 55 chr11 12257571 12257787 -136525685 - L2 LINE L2 -703 2610 2392 1273 204 59 65 chr11 12257790 12258128 -136525344 - MER58B DNA MER1_type -2 339 4 511 360 40 26 chr11 12258445 12258748 -136524724 + L2 LINE L2 2818 3124 -148 453 298 38 0 chr11 12258877 12259008 -136524464 + MIR3 SINE MIR 64 199 -9 214 333 0 14 chr11 12259586 12259655 -136523817 + L2 LINE L2 3202 3269 -3 195 42 0 0 chr11 12259776 12259800 -136523672 + (TG)n Simple_repeat Simple_repeat 2 25 0 252 270 70 20 chr11 12261369 12261469 -136522003 - L2 LINE L2 0 3313 3209 219 193 333 0 chr11 12261563 12261620 -136521852 - L2 LINE L2 -17 3296 3221 347 251 31 68 chr11 12261678 12261841 -136521631 - MER103 DNA DNA -3 163 7 2145 128 14 0 chr11 12262409 12262706 -136520766 + AluSx SINE Alu 1 301 -11 395 292 0 17 chr11 12262792 12262912 -136520560 + L1ME LINE L1 5547 5664 -457 1021 238 135 29 chr11 12263815 12264180 -136519292 + L2 LINE L2 2287 2709 -605 1776 149 66 0 chr11 12264180 12264468 -136519004 - AluSx SINE Alu -5 307 1 1021 238 135 29 chr11 12264468 12264547 -136518925 + L2 LINE L2 2709 2778 -536 438 228 55 39 chr11 12264520 12264647 -136518825 + L2 LINE L2 3182 3310 -3 * 2328 66 3 26 chr11 12265285 12265594 -136517878 + AluY SINE Alu 1 297 -14 470 238 94 44 chr11 12266832 12267246 -136516226 + LTR33A LTR ERVL 1 515 -8 351 292 0 0 chr11 12267316 12267412 -136516060 + MIR SINE MIR 63 158 -104 240 314 58 64 chr11 12268916 12269072 -136514400 + L2 LINE L2 3076 3230 -42 283 289 91 56 chr11 12269328 12269636 -136513836 - MLT1H LTR MaLR -112 297 19 610 295 16 0 chr11 12269713 12269915 -136513557 + MIR SINE MIR 56 262 0 480 284 77 45 chr11 12270427 12270740 -136512732 - L2 LINE L2 -1389 1925 1603 3489 257 51 32 chr11 12270874 12272272 -136511200 - L2 LINE L2 -4 3309 1877 639 227 33 0 chr11 12272839 12272989 -136510483 + MIR SINE MIR 108 262 0 309 288 63 9 chr11 12273185 12273296 -136510176 + MER5A DNA MER1_type 4 120 -69 267 340 124 29 chr11 12273296 12273537 -136509935 - L2 LINE L2 -10 3303 3040 979 246 153 61 chr11 12273560 12274051 -136509421 - MLT1H LTR MaLR -13 536 1 243 338 114 1 chr11 12274051 12274301 -136509171 - L2 LINE L2 -228 3044 2762 3623 126 55 7 chr11 12274304 12274924 -136508548 - Tigger3(Golem) DNA MER2_type 0 3029 2380 924 229 14 9 chr11 12274915 12275125 -136508347 - Tigger3(Golem) DNA MER2_type -2818 211 1 * 216 322 42 42 chr11 12275138 12275256 -136508216 - L2 LINE L2 -575 2739 2622 1215 269 142 40 chr11 12275289 12275963 -136507509 - L2 LINE L2 -801 2513 1771 243 250 0 16 chr11 12276006 12276070 -136507402 - MIR SINE MIR -65 143 81 471 284 0 14 chr11 12276095 12276236 -136507236 - MLT1K LTR MaLR -5 583 445 2073 166 17 64 chr11 12276952 12277361 -136506111 - MLT1B LTR MaLR 0 390 1 190 312 176 8 chr11 12278180 12278305 -136505167 - MIR SINE MIR 0 262 117 991 203 22 0 chr11 12279921 12280163 -136503309 + L1MB3 LINE L1 5652 5902 -269 674 148 12 86 chr11 12280167 12280329 -136503143 + L1MB3 LINE L1 6034 6183 0 197 297 54 68 chr11 12280449 12280597 -136502875 + MER5A DNA MER1_type 22 167 -22 * 344 288 22 29 chr11 12280483 12280622 -136502850 - MER5A DNA MER1_type -44 145 8 4295 120 14 72 chr11 12281475 12282209 -136501263 - LTR8 LTR ERV1 0 691 1 294 277 0 24 chr11 12282987 12283070 -136500402 + (TATG)n Simple_repeat Simple_repeat 3 83 0 1654 140 0 23 chr11 12283164 12283428 -136500044 + AluJb SINE Alu 2 259 -53 225 346 0 58 chr11 12283974 12284078 -136499394 - MIR3 SINE MIR 0 208 111 411 155 0 0 chr11 12284152 12284236 -136499236 + (CA)n Simple_repeat Simple_repeat 2 85 0 296 284 55 9 chr11 12285159 12285268 -136498204 + L2 LINE L2 3200 3313 0 2111 144 0 0 chr11 12286132 12286444 -136497028 - AluSx SINE Alu 0 312 1 307 286 125 0 chr11 12286460 12286572 -136496900 - MIR SINE MIR -66 196 71 196 128 21 21 chr11 12287887 12287934 -136495538 + GA-rich Low_complexity Low_complexity 2 48 0 257 277 0 0 chr11 12288762 12288827 -136494645 + CT-rich Low_complexity Low_complexity 4 68 0 309 330 28 0 chr11 12289316 12289425 -136494047 - L2 LINE L2 0 3313 3202 396 0 0 0 chr11 12291373 12291417 -136492055 + (TCC)n Simple_repeat Simple_repeat 3 46 0 2120 141 0 0 chr11 12291711 12292015 -136491457 - AluSx SINE Alu -8 304 1 644 140 9 26 chr11 12292015 12292129 -136491343 - AluJo SINE Alu -2 310 199 885 175 7 0 chr11 12292129 12292272 -136491200 - AluJo SINE Alu -168 144 1 313 332 76 58 chr11 12292275 12292498 -136490974 - L1ME4a LINE L1 -222 5899 5673 26 50 0 0 chr11 12292579 12292619 -136490853 + AT_rich Low_complexity Low_complexity 1 40 0 1095 287 74 13 chr11 12297350 12297879 -136485593 + L1ME4a LINE L1 5559 6119 -2 603 151 0 59 chr11 12298781 12298900 -136484572 + MER21B LTR ERV1 356 467 -396 978 280 16 0 chr11 12299195 12299452 -136484020 - MIR SINE MIR 0 262 2 1096 162 126 41 chr11 12301543 12301764 -136481708 + L1MB3 LINE L1 5889 6139 -44 2267 105 3 0 chr11 12301764 12302070 -136481402 + AluSp SINE Alu 1 307 -6 1096 162 126 41 chr11 12302070 12302119 -136481353 + L1MB3 LINE L1 6139 6182 -1 268 353 26 0 chr11 12302222 12302338 -136481134 - MIR SINE MIR -60 148 30 318 322 82 13 chr11 12302573 12302755 -136480717 + MIR SINE MIR 41 241 -21 395 242 0 32 chr11 12302780 12302875 -136480597 + MER21B LTR ERV1 1 92 -771 1953 231 58 9 chr11 12302875 12303320 -136480152 + MER21B LTR ERV1 43 509 -354 308 232 0 3 chr11 12303316 12303388 -136480084 - MER21B LTR ERV1 -298 633 497 * 22 0 0 0 chr11 12305377 12305399 -136478073 + AT_rich Low_complexity Low_complexity 1 22 0 346 248 73 0 chr11 12305705 12305814 -136477658 - MER5C DNA MER1_type 0 324 208 206 244 0 0 chr11 12305880 12305925 -136477547 - MER5C DNA MER1_type -279 45 1 260 327 9 0 chr11 12306376 12306462 -136477010 + MIR SINE MIR 86 151 -57 1059 62 0 0 chr11 12306537 12306666 -136476806 + L1MA1 LINE L1 6174 6302 0 326 276 123 18 chr11 12307560 12307723 -136475749 - MIR SINE MIR -33 229 50 419 349 20 0 chr11 12307831 12307977 -136475495 - MIR SINE MIR -44 218 70 278 53 0 0 chr11 12309434 12309472 -136474000 - MIR SINE MIR -135 127 90 487 274 40 67 chr11 12309888 12310187 -136473285 + L2 LINE L2 3017 3307 -6 875 168 0 37 chr11 12310189 12310350 -136473122 + FRAM SINE Alu 8 162 -14 229 250 92 0 chr11 12311236 12311312 -136472160 - MIR SINE MIR -67 141 59 259 286 14 0 chr11 12312558 12312628 -136470844 + L2 LINE L2 3200 3270 -2 236 330 0 10 chr11 12314875 12314975 -136468497 + MER5A DNA MER1_type 13 111 -78 563 203 35 35 chr11 12314982 12315125 -136468347 - MER5B DNA MER1_type -3 175 33 1134 155 58 10 chr11 12317030 12317237 -136466235 + MER58A DNA MER1_type 8 224 0 423 290 124 0 chr11 12317722 12317891 -136465581 + MIR SINE MIR 29 218 -44 2484 187 69 4 chr11 12318067 12318576 -136464896 - L1MD3 LINE L1 0 7995 7454 417 226 20 0 chr11 12319134 12319236 -136464236 - MER5A DNA MER1_type -77 112 9 217 220 85 0 chr11 12320507 12320566 -136462906 - MIR SINE MIR -149 113 50 448 254 7 63 chr11 12321416 12321558 -136461914 - MER94 DNA DNA 0 134 1 370 340 38 6 chr11 12323639 12323798 -136459674 + MIR SINE MIR 49 212 -50 534 206 0 0 chr11 12323819 12323916 -136459556 - Tigger7 DNA MER2_type 0 2491 2395 392 179 30 0 chr11 12323914 12323981 -136459491 - Tigger7 DNA MER2_type -284 266 198 * 228 250 0 0 chr11 12326849 12326913 -136456559 + L2 LINE L2 2219 2282 -1032 1361 130 77 38 chr11 12327082 12327343 -136456129 - L1MB8 LINE L1 0 6178 5908 1357 144 52 45 chr11 12327386 12327498 -136455974 - L1MB8 LINE L1 -252 5926 5816 2378 94 0 0 chr11 12327498 12327796 -136455676 - AluSx SINE Alu -10 302 5 1357 144 52 45 chr11 12327796 12327974 -136455498 - L1MB8 LINE L1 -362 5816 5634 282 56 0 0 chr11 12328276 12328312 -136455160 + (A)n Simple_repeat Simple_repeat 1 36 0 616 238 23 35 chr11 12328432 12328604 -136454868 - MIR SINE MIR -7 255 86 1312 255 115 15 chr11 12328611 12329003 -136454469 - MLT1J2 LTR MaLR 0 450 20 300 182 30 0 chr11 12329017 12329083 -136454389 - MIR SINE MIR -177 85 18 752 271 19 5 chr11 12329238 12329445 -136454027 - MIR SINE MIR 0 262 53 1057 214 36 62 chr11 12329554 12329921 -136453551 + L1MC5 LINE L1 7555 7913 -48 1187 209 4 59 chr11 12329921 12330041 -136453431 + MER8 DNA MER2_type 1 101 -138 2229 114 3 0 chr11 12330041 12330347 -136453125 + AluSq SINE Alu 1 307 -6 1187 209 4 59 chr11 12330347 12330479 -136452993 + MER8 DNA MER2_type 101 239 0 1057 214 36 62 chr11 12330479 12330499 -136452973 + L1MC5 LINE L1 7913 7932 -29 598 244 114 15 chr11 12331266 12331467 -136452005 - MIR SINE MIR -31 231 11 668 263 83 0 chr11 12331663 12331868 -136451604 + MIR SINE MIR 28 249 -13 260 112 101 0 chr11 12332122 12332211 -136451261 + CT-rich Low_complexity Low_complexity 2 99 0 462 315 79 5 chr11 12332433 12332462 -136451010 - L1MC/D LINE L1 -2031 5777 5752 756 199 0 0 chr11 12332462 12332593 -136450879 - FLAM_A SINE Alu -2 131 1 462 315 79 5 chr11 12332593 12332766 -136450706 - L1MC/D LINE L1 -2056 5752 5560 284 192 0 0 chr11 12333340 12333397 -136450075 + L1MD3 LINE L1 7345 7488 -507 198 0 0 0 chr11 12333542 12333564 -136449908 + (T)n Simple_repeat Simple_repeat 1 22 0 2338 100 0 0 chr11 12334132 12334432 -136449040 - AluSx SINE Alu -12 300 1 355 143 0 0 chr11 12334569 12334618 -136448854 + Charlie3 DNA MER1_type 2658 2706 -4 * 884 103 63 0 chr11 12334616 12334742 -136448730 - MSTC LTR MaLR -294 134 1 4633 156 46 7 chr11 12334742 12335573 -136447899 + L1MC3 LINE L1 6122 6984 -801 225 108 15 154 chr11 12335587 12335652 -136447820 + L1MD3 LINE L1 6986 7041 -954 2003 130 20 3 chr11 12335784 12336076 -136447396 + AluJb SINE Alu 1 297 -15 397 188 0 0 chr11 12336294 12336363 -136447109 - MIR SINE MIR 0 262 194 310 352 34 17 chr11 12336387 12336620 -136446852 - L2 LINE L2 -471 2843 2607 749 340 53 34 chr11 12336944 12337415 -136446057 + L2 LINE L2 2377 2856 -458 307 316 123 0 chr11 12337386 12337541 -136445931 + L2 LINE L2 3077 3250 -63 * 922 235 5 14 chr11 12337550 12337784 -136445688 + MIR SINE MIR 21 249 -13 188 316 0 0 chr11 12337804 12337861 -136445611 + L2 LINE L2 3255 3311 -2 5964 171 33 13 chr11 12338869 12340493 -136442979 + L1MA9 LINE L1 4653 6312 0 380 305 86 25 chr11 12341150 12341347 -136442125 + MIR SINE MIR 9 217 -45 993 261 149 0 chr11 12341351 12341707 -136441765 - LTR33 LTR ERVL 0 521 113 458 206 48 74 chr11 12341819 12342008 -136441464 + MIR SINE MIR 68 251 -11 604 315 8 25 chr11 12342551 12342711 -136440761 - MIR SINE MIR -18 244 88 2499 85 8 30 chr11 12342711 12343074 -136440398 - THE1A LTR MaLR 0 355 1 604 315 8 25 chr11 12343074 12343154 -136440318 - MIR SINE MIR -174 88 8 688 148 35 0 chr11 12344394 12344509 -136438963 - Tigger1 DNA MER2_type 0 2418 2300 1136 205 5 0 chr11 12344520 12344720 -136438752 + AluJo SINE Alu 15 215 -97 371 293 24 0 chr11 12344825 12344948 -136438524 - L1ME LINE L1 -320 5801 5676 246 263 38 0 chr11 12345029 12345109 -136438363 + MARNA DNA Mariner 480 562 -24 797 158 8 15 chr11 12345157 12345290 -136438182 + FLAM_C SINE Alu 2 133 0 384 319 99 9 chr11 12346302 12346534 -136436938 - MIR SINE MIR -8 254 2 2103 198 90 67 chr11 12347391 12348002 -136435470 + MLT1E2 LTR MaLR 2 626 0 1050 296 69 36 chr11 12348286 12348780 -136434692 - L2 LINE L2 0 3313 2804 2090 107 53 7 chr11 12349868 12350167 -136433305 + AluSq SINE Alu 1 313 0 2097 114 105 12 chr11 12350257 12350325 -136433147 - THE1B LTR MaLR 0 364 304 2406 90 0 3 chr11 12350325 12350625 -136432847 + AluSg SINE Alu 1 299 -11 2097 114 105 12 chr11 12350625 12350889 -136432583 - THE1B LTR MaLR -60 304 1 649 321 50 34 chr11 12351246 12351664 -136431808 - LTR16C LTR ERVL -2 489 65 427 226 12 0 chr11 12351810 12351894 -136431578 - MLT1D LTR MaLR -420 85 1 595 259 196 49 chr11 12352065 12352572 -136430900 + L2 LINE L2 2709 3307 -6 809 153 33 0 chr11 12354136 12354286 -136429186 - MER63 DNA MER1_type -905 156 2 1780 159 24 10 chr11 12354385 12354681 -136428791 + AluJo SINE Alu 1 300 -12 183 366 0 0 chr11 12355051 12355122 -136428350 - MIR SINE MIR -1 261 191 212 244 0 0 chr11 12355303 12355344 -136428128 + polypyrimidine Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 12356515 12356536 -136426936 + AT_rich Low_complexity Low_complexity 1 21 0 345 231 140 21 chr11 12356745 12356888 -136426584 + L2 LINE L2 2539 2698 -616 447 235 27 91 chr11 12356908 12357129 -136426343 + MIR SINE MIR 21 227 -35 568 244 47 47 chr11 12357236 12357470 -136426002 + L2 LINE L2 2836 3069 -203 915 206 5 0 chr11 12357670 12357859 -136425613 - AluJb SINE Alu 0 312 123 323 271 28 9 chr11 12358174 12358281 -136425191 - MIR SINE MIR -98 164 56 311 365 87 5 chr11 12360920 12361139 -136422333 - L2 LINE L2 -6 3266 3030 2226 177 9 21 chr11 12361519 12361916 -136421556 + L1MC3 LINE L1 7367 7760 -25 515 105 53 0 chr11 12361916 12361992 -136421480 - MADE1 DNA Mariner 0 80 1 2226 177 9 21 chr11 12361992 12362018 -136421454 + L1MC3 LINE L1 7760 7785 0 739 239 81 34 chr11 12362110 12362344 -136421128 - MIR SINE MIR 0 262 18 1289 179 79 4 chr11 12363365 12363605 -136419867 - MLT1D LTR MaLR -1 504 247 1208 288 120 23 chr11 12363794 12364353 -136419119 + MLT1L LTR MaLR 1 613 -2 269 283 54 91 chr11 12364565 12364841 -136418631 - L2 LINE L2 0 3272 3007 2317 212 67 41 chr11 12365393 12366123 -136417349 + L1ME LINE L1 4015 4763 -1383 609 229 62 10 chr11 12366108 12366300 -136417172 + L1ME LINE L1 4974 5175 -971 * 607 98 0 0 chr11 12366301 12366383 -136417089 + AluSg SINE Alu 2 83 -227 662 278 199 19 chr11 12366942 12367370 -136416102 + LTR33 LTR ERVL 17 521 0 1350 156 70 12 chr11 12367816 12368072 -136415400 + AluJo SINE Alu 39 309 -3 2235 92 3 3 chr11 12369036 12369339 -136414133 + AluSc SINE Alu 1 303 -6 2306 68 3 0 chr11 12369346 12369638 -136413834 + AluY SINE Alu 2 294 -17 278 307 150 0 chr11 12370138 12370265 -136413207 - MIR SINE MIR -25 237 92 227 306 28 62 chr11 12370350 12370494 -136412978 + L3 LINE CR1 1436 1574 -3 294 314 75 17 chr11 12371001 12371240 -136412232 + L1ME LINE L1 5414 5666 -500 301 264 96 16 chr11 12372604 12372729 -136410743 + MIR SINE MIR 109 243 -19 252 0 0 0 chr11 12373842 12373870 -136409602 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1725 133 17 20 chr11 12373873 12374174 -136409298 - AluSx SINE Alu -11 301 2 1214 141 8 73 chr11 12374348 12374582 -136408890 + MER20 DNA MER1_type 1 219 0 525 180 71 156 chr11 12374669 12374882 -136408590 - MIR SINE MIR -7 255 57 300 340 19 9 chr11 12374932 12375038 -136408434 - MIR SINE MIR -50 212 106 216 325 33 50 chr11 12375074 12375194 -136408278 + L2 LINE L2 3134 3251 -21 1863 160 44 58 chr11 12375238 12375781 -136407691 - MLT2A2 LTR ERVL 0 554 1 27 81 0 0 chr11 12377657 12377719 -136405753 + AT_rich Low_complexity Low_complexity 1 62 0 2037 120 7 0 chr11 12377740 12378048 -136405424 - AluSx SINE Alu -2 310 1 1395 167 14 44 chr11 12378077 12378352 -136405120 - AluJb SINE Alu -12 300 34 225 239 106 14 chr11 12378466 12378608 -136404864 - L1M4 LINE L1 -1089 5057 4903 459 322 115 51 chr11 12378671 12379340 -136404132 - L1M4 LINE L1 -1299 4847 4006 801 182 32 82 chr11 12379340 12379560 -136403912 - MER3 DNA MER1_type 0 209 1 459 322 115 51 chr11 12379560 12379894 -136403578 - L1M4 LINE L1 -2140 4006 3695 202 314 29 49 chr11 12380125 12380227 -136403245 - L2 LINE L2 -5 3267 3168 584 226 109 105 chr11 12381776 12382015 -136401457 - MIR SINE MIR -2 260 21 458 267 42 8 chr11 12382165 12382285 -136401187 - L2 LINE L2 -1 3312 3189 271 157 39 0 chr11 12382625 12382676 -136400796 - MIR SINE MIR -92 170 118 1249 181 91 15 chr11 12382996 12383261 -136400211 - AluJo SINE Alu -14 298 14 241 272 111 0 chr11 12384449 12384530 -136398942 + MIR SINE MIR 32 121 -141 312 209 93 0 chr11 12384810 12384896 -136398576 - MER117 DNA MER1_type 0 197 104 261 266 56 18 chr11 12385200 12385323 -136398149 - MIR SINE MIR -51 157 33 314 272 99 91 chr11 12385796 12386138 -136397334 + LTR16A LTR ERVL 91 435 -15 247 215 114 13 chr11 12386235 12386314 -136397158 - MIR SINE MIR -92 116 30 572 257 37 37 chr11 12386363 12386550 -136396922 - MIR SINE MIR -56 206 20 1829 186 136 35 chr11 12387178 12387641 -136395831 + MER63 DNA MER1_type 548 1057 -4 206 81 27 0 chr11 12390714 12390751 -136392721 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 199 196 0 43 chr11 12390858 12390904 -136392568 - L3 LINE CR1 -2 1575 1532 292 300 119 31 chr11 12392902 12393010 -136390462 + MIR SINE MIR 13 141 -121 2047 100 0 23 chr11 12393010 12393347 -136390125 - AluY SINE Alu 0 311 1 292 300 119 31 chr11 12393347 12393398 -136390074 + MIR SINE MIR 141 186 -76 1507 79 5 5 chr11 12393789 12393991 -136389481 - AluY SINE Alu -109 202 1 1546 178 4 0 chr11 12394355 12394624 -136388848 - AluJo SINE Alu -37 275 6 387 259 80 18 chr11 12394791 12394903 -136388569 + L2 LINE L2 3149 3267 -5 964 243 162 65 chr11 12395042 12395553 -136387919 + MLT1L LTR MaLR 6 566 -49 378 237 134 0 chr11 12395626 12395723 -136387749 + L3 LINE CR1 1467 1576 -1 509 216 88 14 chr11 12395813 12395961 -136387511 + MIR SINE MIR 34 192 -70 198 281 124 51 chr11 12396541 12396699 -136386773 - MIR SINE MIR -55 207 23 2254 191 62 48 chr11 12398220 12398764 -136384708 - MLT2B3 LTR ERVL -2 552 1 1950 132 7 0 chr11 12398894 12399190 -136384282 - AluSx SINE Alu -14 298 1 226 266 215 27 chr11 12399223 12399369 -136384103 - MIR3 SINE MIR -77 185 13 403 289 20 60 chr11 12399901 12400050 -136383422 - MIR SINE MIR -73 189 47 1300 244 124 10 chr11 12400395 12400813 -136382659 + LTR33 LTR ERVL 14 479 -42 239 302 0 0 chr11 12400857 12400920 -136382552 - MIR SINE MIR -102 106 44 428 81 203 0 chr11 12402071 12402145 -136381327 + L1PA12 LINE L1 5863 5951 -217 753 216 105 0 chr11 12402158 12402320 -136381152 + MER3 DNA MER1_type 29 207 -2 1553 103 36 9 chr11 12402616 12402840 -136380632 + MER30 DNA MER1_type 1 230 0 514 261 38 13 chr11 12403514 12403671 -136379801 - MIR3 SINE MIR 0 208 48 265 351 92 17 chr11 12404725 12404899 -136378573 - MIR SINE MIR -24 238 52 762 148 0 22 chr11 12405060 12405195 -136378277 + AluJb SINE Alu 16 147 -165 574 139 178 0 chr11 12405186 12405287 -136378185 + AluSx SINE Alu 51 169 -143 * 1131 120 80 0 chr11 12405288 12405463 -136378009 + AluSg/x SINE Alu 110 298 -14 454 330 17 0 chr11 12405898 12406016 -136377456 + L2 LINE L2 3137 3256 -16 926 161 87 0 chr11 12406843 12407004 -136376468 + FAM SINE Alu 1 175 0 624 253 147 13 chr11 12407367 12407592 -136375880 + L1ME1 LINE L1 5864 6118 -48 2133 112 3 0 chr11 12407595 12407890 -136375582 - AluSx SINE Alu -16 296 1 691 219 0 0 chr11 12408097 12408225 -136375247 + FLAM_A SINE Alu 1 128 -5 2159 132 0 0 chr11 12408971 12409275 -136374197 + AluSx SINE Alu 1 304 -8 2282 248 69 23 chr11 12409667 12410321 -136373151 - MER21B LTR ERV1 -57 806 123 287 292 29 7 chr11 12410746 12410883 -136372589 - MER117 DNA MER1_type -49 148 9 520 211 41 14 chr11 12411557 12411704 -136371768 - HsTC2 DNA Tc2 -18 1880 1730 701 231 59 6 chr11 12411707 12411876 -136371596 - HsTC2 DNA Tc2 -1719 179 2 187 314 69 49 chr11 12412824 12412926 -136370546 - MIR SINE MIR -139 123 20 29 47 0 0 chr11 12413042 12413085 -136370387 + AT_rich Low_complexity Low_complexity 1 43 0 22 70 0 0 chr11 12413224 12413267 -136370205 + AT_rich Low_complexity Low_complexity 1 43 0 1931 113 10 10 chr11 12414123 12414415 -136369057 - AluSx SINE Alu -20 292 1 2120 113 10 0 chr11 12414651 12414951 -136368521 - AluSx SINE Alu -9 303 1 229 251 82 82 chr11 12415043 12415250 -136368222 - L1MC/D LINE L1 -1991 5817 5611 532 286 39 0 chr11 12415598 12415752 -136367720 - MIR SINE MIR -5 257 98 280 82 82 20 chr11 12415749 12415798 -136367674 + L2 LINE L2 3190 3241 -72 * 764 243 127 64 chr11 12415798 12416254 -136367218 - L1ME4a LINE L1 -101 6020 5536 2209 106 0 3 chr11 12416587 12416899 -136366573 + AluSx SINE Alu 1 311 -1 2057 130 7 0 chr11 12416906 12417202 -136366270 + AluSx SINE Alu 1 295 -17 377 241 8 0 chr11 12417285 12417418 -136366054 + (TA)n Simple_repeat Simple_repeat 1 134 0 292 256 12 109 chr11 12418800 12418982 -136364490 - MIR SINE MIR -61 147 18 1082 143 0 12 chr11 12419551 12419712 -136363760 + FRAM SINE Alu 1 159 -17 2039 165 104 20 chr11 12419797 12420190 -136363282 - MSTB LTR MaLR 0 426 1 204 111 0 0 chr11 12420732 12420768 -136362704 + (TG)n Simple_repeat Simple_repeat 2 37 0 1457 164 0 44 chr11 12421874 12422149 -136361323 + L1MC1 LINE L1 6066 6328 -5 453 221 96 0 chr11 12423657 12423761 -136359711 + MER94 DNA DNA 2 115 -19 249 287 56 28 chr11 12423781 12423889 -136359583 + L2 LINE L2 3141 3251 -21 255 125 0 0 chr11 12423929 12423969 -136359503 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr11 12424064 12424100 -136359372 + (A)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr11 12425039 12425069 -136358403 + AT_rich Low_complexity Low_complexity 1 30 0 324 252 104 9 chr11 12425266 12425381 -136358091 + MIR SINE MIR 8 133 -129 2103 151 0 3 chr11 12425826 12426131 -136357341 - AluJb SINE Alu -8 304 1 1539 202 76 16 chr11 12426340 12426721 -136356751 + L1MC3 LINE L1 6698 7101 -684 292 224 71 24 chr11 12426726 12426811 -136356661 + MLT1F1 LTR MaLR 45 133 -434 1590 195 117 21 chr11 12426829 12427264 -136356208 + L1MC3 LINE L1 7308 7784 -1 2356 107 3 0 chr11 12427269 12427578 -136355894 + AluSp SINE Alu 1 310 -3 2172 142 0 0 chr11 12427581 12427890 -136355582 + AluSx SINE Alu 1 309 -3 702 254 83 0 chr11 12428441 12428634 -136354838 - MER3 DNA MER1_type 0 209 1 22 35 0 0 chr11 12428742 12428771 -136354701 + AT_rich Low_complexity Low_complexity 1 29 0 1901 265 70 80 chr11 12429272 12430060 -136353412 + L1MEd LINE L1 3 797 -5513 863 154 0 22 chr11 12430060 12430196 -136353276 + FLAM_C SINE Alu 1 133 0 1901 265 70 80 chr11 12430196 12430952 -136352520 + L1MEd LINE L1 797 1559 -4751 2461 81 0 0 chr11 12430952 12431250 -136352222 + AluY SINE Alu 1 298 -13 2125 125 26 3 chr11 12431259 12431562 -136351910 + AluSx SINE Alu 1 310 -2 1901 265 70 80 chr11 12431562 12431658 -136351814 + L1MEd LINE L1 1567 1657 -4653 323 302 70 51 chr11 12432130 12432184 -136351288 + L1MEd LINE L1 2172 2223 -3906 1829 159 0 20 chr11 12432184 12432486 -136350986 - AluJo SINE Alu -16 296 1 323 302 70 51 chr11 12432486 12432802 -136350670 + L1MEd LINE L1 2223 2549 -3580 280 254 162 51 chr11 12432803 12433000 -136350472 + L1MEd LINE L1 2571 2789 -3340 215 59 0 29 chr11 12435187 12435221 -136348251 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 271 254 0 18 chr11 12435277 12435391 -136348081 + GA-rich Low_complexity Low_complexity 3 114 0 714 264 138 20 chr11 12435733 12436183 -136347289 + L1ME4a LINE L1 5617 6119 -2 237 268 20 22 chr11 12437212 12437324 -136346148 + MIR SINE MIR 33 142 -66 626 253 30 0 chr11 12437433 12437599 -136345873 - MIR SINE MIR -2 260 90 3998 158 27 4 chr11 12437700 12438401 -136345071 - L1MB2 LINE L1 -7 6164 5448 1034 242 25 0 chr11 12439240 12439480 -136343992 - MIR SINE MIR 0 262 17 1023 234 87 18 chr11 12440232 12440518 -136342954 - MLT1D LTR MaLR -195 310 5 192 321 0 0 chr11 12441591 12441644 -136341828 + L2 LINE L2 3247 3299 -14 981 171 25 10 chr11 12442261 12442460 -136341012 - MIR SINE MIR -56 206 5 255 148 19 0 chr11 12442806 12442860 -136340612 - L1ME4a LINE L1 0 6121 6067 294 284 153 11 chr11 12442933 12443116 -136340356 - L1ME4a LINE L1 -188 5933 5725 1766 155 86 10 chr11 12443260 12443550 -136339922 - AluJb SINE Alu 0 312 1 256 303 70 14 chr11 12443700 12443842 -136339630 - LTR16C LTR ERVL -66 425 276 204 222 0 0 chr11 12444634 12444670 -136338802 - L2 LINE L2 -23 3290 3255 278 226 200 26 chr11 12444909 12445024 -136338448 + L2 LINE L2 3138 3272 0 246 261 49 63 chr11 12445868 12446010 -136337462 - L2 LINE L2 -157 3115 2976 220 320 55 23 chr11 12446356 12446484 -136336988 + MIR SINE MIR 125 256 -6 1972 174 166 76 chr11 12446959 12447681 -136335791 + L1MC5 LINE L1 6688 7474 -487 671 191 93 118 chr11 12447685 12448084 -136335388 + L1MC5 LINE L1 7525 7913 -48 486 242 67 19 chr11 12449191 12449396 -136334076 - L1PA8A LINE L1 -630 5501 5291 253 302 47 33 chr11 12449570 12449768 -136333704 - L1M4 LINE L1 -991 5155 4950 2611 194 115 14 chr11 12449768 12450361 -136333111 - MER82 DNA MER2_type 0 653 1 253 302 47 33 chr11 12450361 12450437 -136333035 - L1M4 LINE L1 -1196 4950 4877 1473 155 41 4 chr11 12450456 12450701 -136332771 + AluJo SINE Alu 47 300 -12 354 309 95 8 chr11 12450703 12450946 -136332526 - L1M4 LINE L1 -1408 4738 4475 692 233 88 33 chr11 12451237 12451477 -136331995 - MIR SINE MIR -8 254 2 5040 161 28 4 chr11 12451509 12452353 -136331119 + MER6 DNA MER2_type 1 865 0 306 311 59 22 chr11 12453463 12453733 -136329739 + L1ME LINE L1 5290 5569 -593 646 266 57 9 chr11 12453800 12454029 -136329443 + MIR SINE MIR 8 247 -15 282 265 15 0 chr11 12454211 12454279 -136329193 - L2 LINE L2 -20 3293 3225 268 250 0 0 chr11 12454454 12454506 -136328966 + HsTC2 DNA Tc2 34 85 -1813 238 186 0 0 chr11 12454482 12454525 -136328947 + HsTC2 DNA Tc2 1853 1895 -3 * 245 271 14 14 chr11 12454845 12454915 -136328557 - MLT1K LTR MaLR 0 588 519 255 260 47 55 chr11 12457022 12457149 -136326323 - MARNA DNA Mariner -13 573 448 324 229 0 0 chr11 12457311 12457381 -136326091 - MIR SINE MIR -105 157 88 321 249 139 11 chr11 12457922 12458094 -136325378 - MIR3 SINE MIR -65 143 1 315 224 106 0 chr11 12459462 12459547 -136323925 - L1MC4 LINE L1 -32 8010 7917 441 218 50 0 chr11 12459548 12459649 -136323823 - L1MC4 LINE L1 -190 7852 7747 389 154 0 77 chr11 12459655 12459692 -136323780 + MER116 DNA Mariner 1 31 -49 2308 97 10 3 chr11 12459692 12460002 -136323470 - AluSq SINE Alu -1 312 1 389 154 0 77 chr11 12460002 12460042 -136323430 + MER116 DNA Mariner 31 72 -8 1225 242 81 28 chr11 12460044 12460441 -136323031 - L1MC4 LINE L1 -355 7687 7270 1957 146 0 10 chr11 12461060 12461355 -136322117 - AluJb SINE Alu -20 292 1 777 262 34 42 chr11 12461910 12462173 -136321299 - MIR SINE MIR 0 262 2 1769 157 53 10 chr11 12465883 12466182 -136317290 + AluJb SINE Alu 1 312 0 304 250 141 0 chr11 12466555 12466647 -136316825 + L1ME3 LINE L1 5465 5569 -2426 1623 177 58 131 chr11 12466781 12467300 -136316172 + MLT1D LTR MaLR 25 505 0 302 233 256 35 chr11 12467305 12467477 -136315995 + L1ME3 LINE L1 5619 5828 -334 2424 76 20 0 chr11 12467630 12467934 -136315538 - AluSq SINE Alu -3 310 1 416 268 155 44 chr11 12468006 12468323 -136315149 + L1ME3 LINE L1 5811 6162 0 22 0 0 0 chr11 12468311 12468333 -136315139 + AT_rich Low_complexity Low_complexity 1 22 0 * 299 183 83 17 chr11 12469339 12469399 -136314073 - MER91B DNA MER1_type -126 64 1 340 233 111 0 chr11 12469480 12469570 -136313902 - MIR SINE MIR -111 151 52 297 289 150 57 chr11 12470012 12470441 -136313031 - L2 LINE L2 -94 3219 2755 391 275 7 120 chr11 12470442 12470584 -136312888 - MER91C DNA MER1_type -11 129 4 982 169 10 34 chr11 12471234 12471441 -136312031 + L1PB3 LINE L1 5952 6153 -1 541 252 37 70 chr11 12471707 12471949 -136311523 - L1ME3A LINE L1 -10 6160 5927 333 207 0 0 chr11 12472484 12472571 -136310901 + GA-rich Low_complexity Low_complexity 2 88 0 500 280 48 36 chr11 12473489 12473657 -136309815 - MIR SINE MIR -5 257 88 275 111 111 0 chr11 12473694 12473748 -136309724 - L1ME3 LINE L1 -169 5993 5934 1806 152 93 60 chr11 12478759 12479121 -136304351 - Tigger2a DNA MER2_type -2274 434 54 2009 116 0 3 chr11 12479121 12479429 -136304043 + AluSg SINE Alu 1 307 0 1806 152 93 60 chr11 12479429 12479485 -136303987 - Tigger2a DNA MER2_type -2654 54 1 279 274 0 24 chr11 12581518 12581602 -136201870 - MIR SINE MIR -169 93 12 220 243 100 0 chr11 12582292 12582362 -136201110 - L2 LINE L2 -1 3312 3236 180 0 0 0 chr11 12582429 12582449 -136201023 + (A)n Simple_repeat Simple_repeat 1 20 0 2423 88 0 19 chr11 12583302 12583610 -136199862 + AluSq SINE Alu 1 302 -11 255 209 22 22 chr11 12583640 12583731 -136199741 + CT-rich Low_complexity Low_complexity 2 92 0 933 198 17 17 chr11 12583732 12583909 -136199563 - AluJb SINE Alu -18 294 118 252 326 0 0 chr11 12584534 12584631 -136198841 - MER5B DNA MER1_type 0 178 92 191 291 197 8 chr11 12584573 12584690 -136198782 + MER5A DNA MER1_type 50 188 -1 * 603 296 99 17 chr11 12584869 12585224 -136198248 + L2 LINE L2 2266 2649 -665 187 207 58 81 chr11 12585388 12585475 -136197997 + L2 LINE L2 2897 2981 -291 2017 111 25 0 chr11 12586847 12587152 -136196320 + AluSq SINE Alu 1 312 0 34 0 0 0 chr11 12587301 12587335 -136196137 + AT_rich Low_complexity Low_complexity 1 34 0 430 265 44 0 chr11 12588577 12588713 -136194759 + MIR SINE MIR 56 197 -65 478 298 69 23 chr11 12588808 12589026 -136194446 - MIR SINE MIR -27 235 8 379 161 23 35 chr11 12589086 12589173 -136194299 - L2 LINE L2 -27 3245 3160 1610 107 49 23 chr11 12589615 12589878 -136193594 - L1PA13 LINE L1 -3 6160 5891 3900 165 33 27 chr11 12590696 12591777 -136191695 + L1MD2 LINE L1 4992 5997 -245 612 277 15 15 chr11 12591900 12592102 -136191370 + MIR SINE MIR 42 243 -19 205 170 43 0 chr11 12592734 12592781 -136190691 - L2 LINE L2 -3 3269 3221 4522 218 78 26 chr11 12593612 12593873 -136189599 + L1MB8 LINE L1 4058 4304 -1880 2342 104 0 0 chr11 12593873 12594172 -136189300 - AluSq SINE Alu -11 302 4 4522 218 78 26 chr11 12594172 12595468 -136188004 + L1MB8 LINE L1 4304 5691 -493 710 157 0 0 chr11 12595488 12595634 -136187838 + FLAM_C SINE Alu 29 174 0 272 315 21 72 chr11 12595774 12596203 -136187269 + L1MB8 LINE L1 5679 6085 -93 2093 121 17 3 chr11 12597045 12597334 -136186138 - AluSx SINE Alu -19 293 1 605 211 50 39 chr11 12599098 12599278 -136184194 + MER53 DNA DNA 8 189 0 609 303 84 32 chr11 12600793 12601140 -136182332 - L3 LINE CR1 -467 1110 746 1706 143 110 10 chr11 12601730 12602038 -136181434 + MER7A DNA MER2_type 1 337 -9 1720 154 3 66 chr11 12602710 12603028 -136180444 - AluJb SINE Alu -14 298 1 315 0 0 0 chr11 12603218 12603253 -136180219 + (CA)n Simple_repeat Simple_repeat 2 36 0 2069 133 3 17 chr11 12604870 12605171 -136178301 - AluJb SINE Alu -15 297 1 192 216 0 0 chr11 12607409 12607446 -136176026 + MIR SINE MIR 118 154 -108 198 153 51 17 chr11 12607691 12607750 -136175722 + CT-rich Low_complexity Low_complexity 6 66 0 953 303 125 56 chr11 12609992 12610431 -136173041 + L1M4 LINE L1 2865 3272 -2874 342 0 0 0 chr11 12610431 12610469 -136173003 + (CA)n Simple_repeat Simple_repeat 2 39 0 953 303 125 56 chr11 12610469 12610635 -136172837 + L1M4 LINE L1 3272 3425 -2721 1528 135 39 4 chr11 12610635 12610895 -136172577 + L1MA8 LINE L1 6018 6286 -5 953 303 125 56 chr11 12610895 12611067 -136172405 + L1M4 LINE L1 3425 3584 -2562 1732 159 48 10 chr11 12611067 12611362 -136172110 + AluJb SINE Alu 5 310 -2 953 303 125 56 chr11 12611362 12611731 -136171741 + L1M4 LINE L1 3584 4093 -2053 317 295 106 39 chr11 12611859 12612350 -136171122 + L1M4 LINE L1 4402 4925 -1221 1850 153 7 19 chr11 12612497 12612804 -136170668 + AluJo SINE Alu 1 303 -9 183 42 0 0 chr11 12614084 12614108 -136169364 + (CCA)n Simple_repeat Simple_repeat 3 26 0 182 234 64 0 chr11 12614217 12614264 -136169208 + L2 LINE L2 3004 3053 -219 2451 94 0 0 chr11 12614645 12614952 -136168520 + AluSx SINE Alu 1 307 -5 2167 102 20 20 chr11 12615577 12615881 -136167591 - AluSx SINE Alu -8 304 1 1059 225 96 47 chr11 12615887 12616274 -136167198 - L1MA9 LINE L1 -25 6287 5882 476 248 50 21 chr11 12616751 12616892 -136166580 + MIR SINE MIR 42 186 -76 1996 125 3 3 chr11 12616951 12617239 -136166233 - AluSp SINE Alu -25 288 1 22 0 0 0 chr11 12617920 12617942 -136165530 + AT_rich Low_complexity Low_complexity 1 22 0 2433 84 0 0 chr11 12618574 12618873 -136164599 + AluSx SINE Alu 1 299 -13 804 291 79 88 chr11 12619194 12619957 -136163515 - HsTC2 DNA Tc2 -1025 873 121 2519 80 3 6 chr11 12619957 12620295 -136163177 - L1PA8A LINE L1 -1 6130 5794 804 291 79 88 chr11 12620295 12620415 -136163057 - HsTC2 DNA Tc2 -1777 121 1 368 139 38 6 chr11 12620662 12620737 -136162735 + Alu SINE Alu 235 295 -7 294 200 71 12 chr11 12621097 12621182 -136162290 + MER88 LTR ERVL 79 168 -296 * 1264 268 46 52 chr11 12621109 12621587 -136161885 - MER74B LTR ERVL -74 548 74 313 305 186 11 chr11 12621779 12621956 -136161516 + MIR SINE MIR 20 227 -35 215 330 153 8 chr11 12624357 12624475 -136158997 - MIR SINE MIR -108 154 20 261 246 73 64 chr11 12627359 12627469 -136156003 - MIR SINE MIR -66 142 32 425 235 11 158 chr11 12627903 12628163 -136155309 - MIR SINE MIR -28 234 13 944 262 141 93 chr11 12628770 12629572 -136153900 - HAL1 LINE L1 -68 2439 1600 260 293 80 0 chr11 12629862 12629937 -136153535 + L2 LINE L2 3197 3277 -36 407 269 35 55 chr11 12630949 12631094 -136152378 + MIR3 SINE MIR 3 144 -64 2295 95 3 0 chr11 12631460 12631755 -136151717 - AluSx SINE Alu -16 296 1 264 297 55 47 chr11 12631757 12631885 -136151587 - MIR SINE MIR -16 246 118 304 306 16 25 chr11 12633064 12633133 -136150339 + MER103 DNA DNA 2 71 -95 1511 197 14 21 chr11 12633133 12633422 -136150050 - AluJo SINE Alu -25 287 1 304 306 16 25 chr11 12633422 12633473 -136149999 + MER103 DNA DNA 71 121 -45 237 284 0 30 chr11 12633556 12633623 -136149849 - MIR SINE MIR -70 192 128 516 251 72 6 chr11 12634055 12634222 -136149250 - MER5B DNA MER1_type 0 178 1 281 209 45 0 chr11 12636137 12636204 -136147268 - MIR SINE MIR -14 248 179 1942 152 10 0 chr11 12636596 12636886 -136146586 + AluJb SINE Alu 3 295 -17 870 243 42 11 chr11 12637050 12637239 -136146233 + Charlie1a DNA MER1_type 3 197 -1258 911 193 61 10 chr11 12637309 12637506 -136145966 + Charlie1a DNA MER1_type 553 759 -696 832 174 0 19 chr11 12637506 12637661 -136145811 + Charlie1a DNA MER1_type 879 1030 -425 746 164 106 34 chr11 12637664 12637872 -136145600 + Charlie1a DNA MER1_type 1186 1408 -47 387 86 0 35 chr11 12638009 12638067 -136145405 + Charlie1a DNA MER1_type 1399 1454 -1 276 221 17 0 chr11 12638827 12638906 -136144566 + MLT1D LTR MaLR 421 626 0 21 0 0 0 chr11 12638941 12638962 -136144510 + AT_rich Low_complexity Low_complexity 1 21 0 401 123 0 0 chr11 12638962 12639019 -136144453 - FLAM_A SINE Alu -25 117 61 206 220 0 0 chr11 12639732 12639791 -136143681 + (TA)n Simple_repeat Simple_repeat 2 60 0 1660 228 102 27 chr11 12640032 12640554 -136142918 + L1ME3A LINE L1 5607 6167 -3 573 226 5 35 chr11 12640713 12640911 -136142561 + MER97a DNA MER1_type? 2 230 -823 1721 145 17 47 chr11 12640911 12641208 -136142264 - AluJo SINE Alu -10 302 15 573 226 5 35 chr11 12641208 12641233 -136142239 + MER97a DNA MER1_type? 230 254 -799 619 260 56 20 chr11 12641354 12641550 -136141922 + MER97b DNA MER1_type? 423 625 -428 309 215 165 0 chr11 12641550 12641629 -136141843 + MER97c DNA MER1_type? 999 1090 0 728 181 17 0 chr11 12641941 12642057 -136141415 - FLAM_A SINE Alu -15 118 1 245 298 48 0 chr11 12642256 12642340 -136141132 + L1ME LINE L1 5732 5819 -302 2317 90 7 10 chr11 12642678 12642979 -136140493 + AluSp SINE Alu 2 301 -12 2566 11 0 0 chr11 12643610 12643885 -136139587 - AluYa5 SINE Alu -3 308 34 1839 157 17 0 chr11 12644078 12644372 -136139100 + AluSx SINE Alu 10 308 -4 226 279 38 13 chr11 12644416 12644495 -136138977 + L2 LINE L2 2550 2630 -684 242 356 25 8 chr11 12644875 12644993 -136138479 + L2 LINE L2 3139 3258 -14 776 120 30 30 chr11 12645019 12645152 -136138320 - MSTD LTR MaLR 0 396 264 530 221 15 8 chr11 12645205 12645336 -136138136 - MSTD LTR MaLR -264 132 1 200 135 0 0 chr11 12645796 12645833 -136137639 + L2 LINE L2 3274 3310 -3 1350 142 125 83 chr11 12646586 12646946 -136136526 - THE1C LTR MaLR 0 375 1 189 296 12 37 chr11 12647979 12648060 -136135412 - L2 LINE L2 -1015 2299 2221 198 281 61 12 chr11 12649799 12649881 -136133591 + L2 LINE L2 3026 3111 -161 233 209 47 0 chr11 12650531 12650574 -136132898 + tRNA-Pro-CCT tRNA tRNA 20 64 -11 21 0 0 0 chr11 12651988 12652009 -136131463 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 12652360 12652388 -136131084 + AT_rich Low_complexity Low_complexity 1 28 0 324 127 0 0 chr11 12652588 12652643 -136130829 + (CA)n Simple_repeat Simple_repeat 2 56 0 387 0 0 0 chr11 12653064 12653107 -136130365 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 189 0 0 0 chr11 12655718 12655739 -136127733 + (A)n Simple_repeat Simple_repeat 1 21 0 2306 82 4 0 chr11 12655739 12656020 -136127452 - AluSp SINE Alu -31 282 1 291 352 9 9 chr11 12656783 12656891 -136126581 + L2 LINE L2 2989 3096 -176 254 227 61 0 chr11 12657012 12657078 -136126394 + L2 LINE L2 3168 3237 -35 226 274 155 12 chr11 12657424 12657592 -136125880 - L3 LINE CR1 -156 1421 1230 378 234 0 27 chr11 12658880 12658997 -136124475 + MIR SINE MIR 25 136 -72 2156 109 6 16 chr11 12659342 12659655 -136123817 - AluSx SINE Alu -2 310 1 193 294 29 15 chr11 12660279 12660347 -136123125 + MIR SINE MIR 52 120 -142 2101 147 0 0 chr11 12660949 12661235 -136122237 + AluSx SINE Alu 1 286 -26 383 131 82 0 chr11 12661589 12661650 -136121822 - Charlie3 DNA MER1_type -4 2706 2641 2099 142 0 7 chr11 12661992 12662301 -136121171 + AluJb SINE Alu 1 307 -5 236 278 31 31 chr11 12663146 12663253 -136120219 + MIR SINE MIR 1 108 -100 2237 117 0 0 chr11 12663497 12663787 -136119685 - AluSq SINE Alu -23 290 1 180 232 111 20 chr11 12663873 12663972 -136119500 + MIR SINE MIR 127 234 -28 2549 64 3 6 chr11 12664619 12664931 -136118541 + AluY SINE Alu 1 311 0 768 181 0 0 chr11 12665222 12665349 -136118123 + FLAM_A SINE Alu 4 130 -3 723 258 26 5 chr11 12665368 12665558 -136117914 + L2 LINE L2 3116 3309 -4 326 323 84 47 chr11 12665873 12666170 -136117302 + L2 LINE L2 2958 3265 -7 2497 57 0 7 chr11 12666479 12666779 -136116693 + AluY SINE Alu 3 300 -11 330 171 110 0 chr11 12666871 12666953 -136116519 + MIR SINE MIR 81 171 -91 206 338 21 7 chr11 12667195 12667337 -136116135 - L3b LINE CR1 -295 1288 1145 2212 70 63 3 chr11 12667998 12668282 -136115190 - AluSc SINE Alu -8 301 1 559 295 95 17 chr11 12668352 12668593 -136114879 + MIR SINE MIR 3 262 0 26 0 0 0 chr11 12669596 12669622 -136113850 + GC_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chr11 12669703 12669744 -136113728 + (A)n Simple_repeat Simple_repeat 1 41 0 782 188 0 0 chr11 12669744 12669882 -136113590 + AluSc SINE Alu 119 256 -53 2488 164 14 53 chr11 12669898 12670411 -136113061 + L1MB8 LINE L1 5681 6173 -5 324 0 0 0 chr11 12670855 12670891 -136112581 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr11 12670948 12670971 -136112501 + (T)n Simple_repeat Simple_repeat 1 23 0 193 281 0 83 chr11 12671356 12671452 -136112020 - MIR SINE MIR -167 95 8 261 155 84 14 chr11 12672998 12673069 -136110403 - MIR3 SINE MIR -22 186 111 480 252 76 0 chr11 12673209 12673328 -136110144 + MER94 DNA DNA 6 133 -1 521 200 0 0 chr11 12674207 12674302 -136109170 + MER53 DNA DNA 1 95 -94 729 270 242 10 chr11 12674388 12674912 -136108560 - L2 LINE L2 -2 3311 2655 277 105 0 0 chr11 12675683 12675721 -136107751 + U5 snRNA snRNA 1 38 -78 1116 147 0 18 chr11 12675721 12675891 -136107581 - AluSq SINE Alu -13 300 134 2215 90 23 3 chr11 12675891 12676190 -136107282 - AluSx SINE Alu -7 305 1 760 158 0 0 chr11 12676688 12676808 -136106664 - FLAM_C SINE Alu -13 120 1 273 244 84 25 chr11 12676961 12677080 -136106392 + MIR SINE MIR 128 253 -9 26 0 0 0 chr11 12677106 12677132 -136106340 + AT_rich Low_complexity Low_complexity 1 26 0 206 222 63 0 chr11 12678058 12678121 -136105351 + MIR SINE MIR 65 131 -77 1900 166 73 5 chr11 12678449 12678824 -136104648 + L1M4 LINE L1 5332 5714 -464 242 237 0 53 chr11 12680059 12680135 -136103337 + A-rich Low_complexity Low_complexity 5 76 0 208 282 164 9 chr11 12680374 12680484 -136102988 + MIR SINE MIR 82 208 -54 1584 173 16 38 chr11 12680533 12680846 -136102626 + AluJo SINE Alu 1 306 -6 26 0 0 0 chr11 12680880 12680906 -136102566 + AT_rich Low_complexity Low_complexity 1 26 0 328 285 163 31 chr11 12680908 12681227 -136102245 - L1MC/D LINE L1 -2036 5772 5412 1541 239 51 20 chr11 12682746 12683198 -136100274 - MLT1C LTR MaLR 0 467 2 256 296 41 10 chr11 12683221 12683319 -136100153 - MIR SINE MIR -142 120 20 207 170 132 0 chr11 12683325 12683378 -136100094 - MER5A DNA MER1_type -11 178 119 384 190 0 60 chr11 12683392 12683492 -136099980 + MER5A DNA MER1_type 4 97 -92 215 148 19 37 chr11 12683489 12683543 -136099929 - MER5B DNA MER1_type -123 55 3 * 353 260 50 83 chr11 12683560 12683741 -136099731 + MER5B DNA MER1_type 4 178 0 276 196 0 0 chr11 12684203 12684249 -136099223 + Alu SINE Alu 1 46 -257 2158 112 13 10 chr11 12684514 12684818 -136098654 + AluSx SINE Alu 2 306 -6 405 277 77 32 chr11 12684869 12684886 -136098586 - MIR SINE MIR -32 230 215 1829 177 0 13 chr11 12684886 12685196 -136098276 - AluJo SINE Alu -6 306 1 405 277 77 32 chr11 12685196 12685398 -136098074 - MIR SINE MIR -47 215 1 255 281 66 33 chr11 12685578 12685699 -136097773 - L2 LINE L2 -7 3306 3182 763 167 8 0 chr11 12686038 12686170 -136097302 + FLAM_C SINE Alu 1 133 0 265 240 53 40 chr11 12686781 12686856 -136096616 - L2 LINE L2 -44 3228 3153 2198 99 13 7 chr11 12688598 12688900 -136094572 + AluSg1 SINE Alu 1 304 -5 234 0 0 0 chr11 12691767 12691793 -136091679 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 182 250 47 16 chr11 12691991 12692055 -136091417 + MIR SINE MIR 66 131 -131 2651 58 0 0 chr11 12693586 12693894 -136089578 - AluY SINE Alu -3 308 1 180 343 9 29 chr11 12693915 12694020 -136089452 + L2 LINE L2 2623 2725 -589 2190 139 0 0 chr11 12694421 12694731 -136088741 - AluSx SINE Alu -2 310 1 224 341 8 16 chr11 12695073 12695196 -136088276 - MIR3 SINE MIR -2 206 85 2076 102 33 13 chr11 12695763 12696068 -136087404 + AluSq SINE Alu 1 311 -2 465 138 8 41 chr11 12696068 12696191 -136087281 + GA-rich Low_complexity Low_complexity 4 122 0 1122 159 30 52 chr11 12696191 12696423 -136087049 + MLT1B LTR MaLR 164 390 0 24 0 0 0 chr11 12696565 12696589 -136086883 + AT_rich Low_complexity Low_complexity 1 24 0 400 226 0 0 chr11 12697165 12697249 -136086223 + L1MA9 LINE L1 6044 6127 -185 2456 74 0 0 chr11 12697423 12697721 -136085751 - AluY SINE Alu -13 298 1 1585 153 59 7 chr11 12697739 12698027 -136085445 - L1MA7 LINE L1 0 6291 5989 1481 113 132 39 chr11 12698242 12698499 -136084973 + AluSx SINE Alu 3 283 -29 180 0 0 0 chr11 12698499 12698519 -136084953 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 906 162 116 95 chr11 12698964 12699248 -136084224 + AluJo SINE Alu 23 312 0 475 320 82 18 chr11 12699272 12699491 -136083981 - MIR SINE MIR -12 250 18 1207 193 0 19 chr11 12702062 12702275 -136081197 - AluSc SINE Alu -14 295 87 222 208 0 0 chr11 12703068 12703116 -136080356 + (TG)n Simple_repeat Simple_repeat 1 48 0 208 148 37 19 chr11 12703139 12703193 -136080279 + (TA)n Simple_repeat Simple_repeat 1 55 0 388 266 13 65 chr11 12705665 12705819 -136077653 - MIR SINE MIR -33 229 84 210 272 139 44 chr11 12706050 12706230 -136077242 - MIR SINE MIR -46 216 20 181 279 81 23 chr11 12706751 12706837 -136076635 + MIR SINE MIR 36 126 -136 283 273 61 20 chr11 12706866 12706965 -136076507 - L2 LINE L2 -34 3238 3136 236 271 29 0 chr11 12707403 12707473 -136075999 + L2 LINE L2 3242 3313 0 433 325 121 5 chr11 12707951 12708157 -136075315 - MIR SINE MIR -14 248 19 211 348 65 13 chr11 12710181 12710336 -136073136 - MIR SINE MIR -12 250 88 259 346 112 39 chr11 12710820 12710999 -136072473 + L3 LINE CR1 326 517 -1060 209 262 82 0 chr11 12711233 12711294 -136072178 - L2 LINE L2 -33 3280 3215 270 256 165 33 chr11 12711498 12711619 -136071853 + L3 LINE CR1 1345 1481 -96 1006 298 59 15 chr11 12712514 12713111 -136070361 - MER115 DNA AcHobo 0 693 3 676 248 86 22 chr11 12713891 12714113 -136069359 + MIR SINE MIR 25 260 -2 358 221 74 0 chr11 12715306 12715401 -136068071 + MIR SINE MIR 104 205 -57 2258 119 0 0 chr11 12716461 12716764 -136066708 - AluSg SINE Alu -3 307 5 225 232 0 36 chr11 12717884 12717940 -136065532 + MLT1K LTR MaLR 490 543 -45 213 39 0 0 chr11 12718335 12718361 -136065111 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 184 250 45 0 chr11 12720103 12720147 -136063325 + MIR SINE MIR 79 124 -138 580 75 0 38 chr11 12721267 12721373 -136062099 + (TG)n Simple_repeat Simple_repeat 1 102 0 276 200 0 0 chr11 12721729 12721789 -136061683 + CT-rich Low_complexity Low_complexity 1 60 0 236 364 53 23 chr11 12723202 12723334 -136060138 - L2 LINE L2 -19 3253 3118 2489 57 3 10 chr11 12725939 12726240 -136057232 - AluY SINE Alu -12 299 1 184 365 0 0 chr11 12727766 12727829 -136055643 + MIR SINE MIR 32 94 -114 210 257 9 73 chr11 12728334 12728443 -136055029 + CT-rich Low_complexity Low_complexity 2 103 0 2480 64 3 0 chr11 12728445 12728742 -136054730 - AluY SINE Alu -4 307 10 21 0 0 0 chr11 12729445 12729466 -136054006 + AT_rich Low_complexity Low_complexity 1 21 0 291 203 43 0 chr11 12729754 12729823 -136053649 + MIR SINE MIR 71 142 -120 2996 212 130 42 chr11 12731667 12732631 -136050841 + L1M4 LINE L1 4067 5114 -1032 564 296 28 24 chr11 12733045 12733258 -136050214 + MIR SINE MIR 23 236 -26 354 237 32 121 chr11 12733900 12734090 -136049382 - MIR SINE MIR -62 200 28 255 172 195 35 chr11 12836421 12836508 -135946964 - MER103 DNA DNA -50 116 16 1336 249 23 20 chr11 12836681 12837023 -135946449 + L1MDa LINE L1 3 345 -6195 728 235 10 73 chr11 12837026 12837230 -135946242 - AluJb SINE Alu -13 299 109 1791 165 0 14 chr11 12837487 12837784 -135945688 + AluJb SINE Alu 3 295 -17 24 0 0 0 chr11 12837784 12837808 -135945664 + AT_rich Low_complexity Low_complexity 1 24 0 294 236 104 42 chr11 12837950 12838094 -135945378 - L1ME4a LINE L1 -1 6120 5968 2063 34 0 0 chr11 12838492 12838726 -135944746 - L1PA2 LINE L1 0 6155 5922 1928 154 0 3 chr11 12839081 12839379 -135944093 - AluSx SINE Alu -15 297 1 329 289 8 31 chr11 12839581 12839709 -135943763 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 421 326 168 24 chr11 12840813 12841724 -135941748 - L2 LINE L2 -212 3060 1992 440 261 24 101 chr11 12841968 12842175 -135941297 + MIR SINE MIR 48 238 -24 511 251 30 36 chr11 12842199 12842366 -135941106 - MIR SINE MIR -37 225 60 321 197 53 0 chr11 12842376 12842452 -135941020 + MIR SINE MIR 126 205 -57 2118 90 3 3 chr11 12842554 12842864 -135940608 + L1P LINE L1 3126 3435 -2711 1748 278 66 30 chr11 12843005 12843827 -135939645 - L2 LINE L2 -90 3223 2375 1164 286 35 21 chr11 12843880 12844254 -135939218 + LTR16C LTR ERVL 24 402 -89 426 268 95 12 chr11 12844493 12844661 -135938811 - LTR16C LTR ERVL -3 488 307 2251 85 3 3 chr11 12844720 12845002 -135938470 + AluSg SINE Alu 6 287 -23 325 220 110 10 chr11 12845016 12845116 -135938356 + L1MC4 LINE L1 7933 8042 0 2005 143 0 0 chr11 12845130 12845410 -135938062 + AluSx SINE Alu 1 280 -32 351 0 0 0 chr11 12845412 12845451 -135938021 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 956 271 43 15 chr11 12845461 12845789 -135937683 + L1PBa LINE L1 6 342 -6521 3818 144 14 29 chr11 12845929 12846741 -135936731 - L1MA9 LINE L1 -387 5925 5126 375 216 129 9 chr11 12846996 12847112 -135936360 - MIR SINE MIR -12 250 121 182 274 168 0 chr11 12847315 12847428 -135936044 + L2 LINE L2 3136 3267 -5 254 301 163 24 chr11 12848073 12848196 -135935276 + MIR SINE MIR 13 152 -110 917 197 77 19 chr11 12848418 12848626 -135934846 + MIR SINE MIR 2 221 -41 481 284 105 12 chr11 12849884 12850046 -135933426 + MIR SINE MIR 3 179 -83 627 262 62 8 chr11 12851021 12851211 -135932261 + MIR SINE MIR 38 238 -24 23 0 0 0 chr11 12851480 12851503 -135931969 + AT_rich Low_complexity Low_complexity 1 23 0 344 305 123 32 chr11 12851648 12851835 -135931637 + MIR SINE MIR 53 256 -6 8624 129 23 3 chr11 12851863 12853133 -135930339 - HSMAR2 DNA Mariner -3 1299 5 483 268 16 0 chr11 12853250 12853287 -135930185 - L1MA10 LINE L1 -44 6290 6254 257 319 45 38 chr11 12853287 12853444 -135930028 - L1MD2 LINE L1 -246 6113 5956 508 192 39 0 chr11 12853453 12853557 -135929915 - L1M4 LINE L1 -835 5311 5204 * 2231 243 88 26 chr11 12853556 12853704 -135929768 - L1MC3 LINE L1 -380 7405 7268 2022 209 8 3 chr11 12853704 12854067 -135929405 - MLT1A1 LTR MaLR 0 365 1 2231 243 88 26 chr11 12854067 12854269 -135929203 - L1MC3 LINE L1 -517 7268 7080 189 107 0 0 chr11 12854269 12854297 -135929175 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2231 243 88 26 chr11 12854297 12854637 -135928835 - L1MC3 LINE L1 -705 7080 6671 268 188 13 0 chr11 12854723 12854782 -135928690 + MER5A DNA MER1_type 2 61 -128 287 212 158 6 chr11 12854982 12855147 -135928325 + L1MC/D LINE L1 5386 5576 -594 1963 174 68 3 chr11 12855311 12855650 -135927822 + MLT1A1 LTR MaLR 1 361 -4 248 307 68 28 chr11 12855734 12855910 -135927562 + L1M4 LINE L1 4525 4707 -1439 303 180 0 0 chr11 12855933 12855983 -135927489 + (CCCTAA)n Simple_repeat Simple_repeat 3 52 0 242 247 32 54 chr11 12856035 12856128 -135927344 + L1M4 LINE L1 4910 5000 -1146 1470 157 92 29 chr11 12856164 12856445 -135927027 - AluJb SINE Alu -9 303 5 1628 197 0 0 chr11 12857753 12858037 -135925435 - AluJb SINE Alu -8 304 21 1758 172 3 27 chr11 12858690 12858987 -135924485 + AluJo SINE Alu 1 290 -22 418 313 28 17 chr11 12860519 12860713 -135922759 - MER5B DNA MER1_type 0 178 1 228 323 53 41 chr11 12861453 12861575 -135921897 - MIR SINE MIR -68 140 43 246 176 0 88 chr11 12862004 12862095 -135921377 + CT-rich Low_complexity Low_complexity 5 87 0 237 162 0 0 chr11 12863831 12863868 -135919604 - LTR16C LTR ERVL -2 489 453 602 281 90 34 chr11 12863927 12864194 -135919278 - LTR16C LTR ERVL -167 324 43 562 198 60 126 chr11 12866689 12866871 -135916601 + MER5B DNA MER1_type 3 172 -6 552 152 107 9 chr11 12867009 12867121 -135916351 - L2 LINE L2 0 3313 3191 303 248 0 0 chr11 12867491 12867596 -135915876 + (ATG)n Simple_repeat Simple_repeat 2 106 0 22230 65 9 5 chr11 12869906 12873602 -135909870 + L1PA7 LINE L1 2447 6148 -6 1188 203 63 3 chr11 12873611 12873914 -135909558 - MER33 DNA MER1_type -14 310 1 659 277 69 36 chr11 12873927 12874230 -135909242 - L1ME LINE L1 -330 5791 5479 617 273 105 72 chr11 12874249 12874310 -135909162 + HAL1 LINE L1 790 848 -1659 1684 276 33 14 chr11 12874310 12874821 -135908651 + LTR33 LTR ERVL 1 521 0 617 273 105 72 chr11 12874821 12875480 -135907992 + HAL1 LINE L1 848 1534 -973 348 375 46 18 chr11 12875481 12875886 -135907586 + L2 LINE L2 2652 3074 -198 193 320 195 8 chr11 12875934 12876062 -135907410 - L2 LINE L2 -15 3257 3106 351 65 0 0 chr11 12876716 12876762 -135906710 + (T)n Simple_repeat Simple_repeat 1 46 0 4604 223 34 20 chr11 12876875 12877505 -135905967 + L1M4 LINE L1 3797 4453 -1693 2011 145 0 10 chr11 12877505 12877816 -135905656 + AluSq SINE Alu 1 308 -5 4604 223 34 20 chr11 12877816 12878355 -135905117 + L1M4 LINE L1 4453 4983 -1163 569 269 20 30 chr11 12878545 12878742 -135904730 + MIR SINE MIR 43 237 -25 220 68 23 23 chr11 12879659 12879703 -135903769 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1129 103 0 0 chr11 12879703 12879849 -135903623 - AluSg/x SINE Alu -32 280 135 306 87 0 0 chr11 12881401 12881447 -135902025 + (GA)n Simple_repeat Simple_repeat 1 46 0 3100 163 11 15 chr11 12881956 12882489 -135900983 + LTR26B LTR ERV1 1 531 0 204 40 0 0 chr11 12882634 12882659 -135900813 + (CAGT)n Simple_repeat Simple_repeat 4 28 0 345 330 0 0 chr11 12882662 12882765 -135900707 - L2 LINE L2 -10 3303 3201 488 348 48 48 chr11 12882816 12883345 -135900127 - L2 LINE L2 -267 3005 2467 965 188 6 11 chr11 12883410 12883586 -135899886 - MLT1C LTR MaLR 0 467 293 206 335 5 61 chr11 12883640 12883837 -135899635 - L2 LINE L2 -912 2402 2217 2882 3 0 0 chr11 12885423 12885725 -135897747 - AluYa5 SINE Alu -7 304 3 2235 119 0 0 chr11 12886310 12886605 -135896867 - AluSq SINE Alu -18 295 1 1531 165 98 32 chr11 12887098 12887305 -135896167 - MLT1C LTR MaLR -10 616 424 180 97 0 0 chr11 12887305 12887336 -135896136 + (TG)n Simple_repeat Simple_repeat 2 32 0 1531 165 98 32 chr11 12887336 12887514 -135895958 - MLT1C LTR MaLR -202 424 2 277 114 0 23 chr11 12887610 12887654 -135895818 + MER39 LTR ERV1 1 43 -664 * 974 164 0 6 chr11 12887646 12887805 -135895667 + MER39 LTR ERV1 549 706 -1 9989 102 5 6 chr11 12888554 12889952 -135893520 - Tigger1 DNA MER2_type -320 2098 703 371 155 0 0 chr11 12890236 12890294 -135893178 - L1MA9 LINE L1 -5 6307 6250 331 244 24 41 chr11 12890535 12890658 -135892814 + MIR3 SINE MIR 36 156 -52 281 272 116 10 chr11 12891499 12891691 -135891781 + MIR SINE MIR 11 225 -37 203 184 0 0 chr11 12891719 12891757 -135891715 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1225 177 20 19 chr11 12891892 12892827 -135890645 - L1MB8 LINE L1 0 6178 5092 328 239 15 30 chr11 12893314 12893448 -135890024 + L2 LINE L2 2930 3061 -211 453 211 112 33 chr11 12894673 12894825 -135888647 - L2 LINE L2 -42 3271 3108 201 299 117 22 chr11 12894971 12895108 -135888364 - L2 LINE L2 -224 3089 2940 183 273 0 0 chr11 12895801 12895856 -135887616 + L2 LINE L2 3210 3264 -8 591 241 143 16 chr11 12895978 12896223 -135887249 - L1ME4a LINE L1 -26 6095 5820 318 318 128 10 chr11 12896246 12896535 -135886937 - L2 LINE L2 -629 2685 2363 740 255 75 36 chr11 12896813 12897091 -135886381 - L2 LINE L2 -6 3307 3019 319 252 86 60 chr11 12897096 12897247 -135886225 - L2 LINE L2 -3135 179 25 22 0 0 0 chr11 12897889 12897911 -135885561 + AT_rich Low_complexity Low_complexity 1 22 0 810 217 122 30 chr11 12898139 12898369 -135885103 + MER112 DNA MER1_type 8 258 -2 265 345 18 9 chr11 12898476 12898586 -135884886 + L2 LINE L2 3197 3307 -6 488 250 55 6 chr11 12898990 12899009 -135884463 - L1MA10 LINE L1 0 6334 6316 1514 238 133 66 chr11 12899009 12899648 -135883824 - L1ME2 LINE L1 -11 6153 5447 1913 145 16 10 chr11 12899648 12899952 -135883520 - AluSx SINE Alu -6 306 1 1514 238 133 66 chr11 12899952 12900127 -135883345 - L1ME2 LINE L1 -717 5447 5285 489 174 29 6 chr11 12900183 12900355 -135883117 + (TA)n Simple_repeat Simple_repeat 2 177 0 350 74 19 0 chr11 12900355 12900409 -135883063 - L1ME2 LINE L1 -904 5242 5188 1437 29 0 6 chr11 12900415 12900586 -135882886 - L1PA5 LINE L1 0 6154 5985 1739 177 0 32 chr11 12900767 12901107 -135882365 + AluJb SINE Alu 1 330 0 204 284 49 20 chr11 12901224 12901326 -135882146 - MIR SINE MIR -6 256 152 1640 125 24 52 chr11 12901401 12901729 -135881743 + MER33 DNA MER1_type 6 324 0 1168 254 98 33 chr11 12901875 12902361 -135881111 + MLT1H LTR MaLR 18 545 -4 2847 13 0 3 chr11 12902493 12902805 -135880667 + AluYa5 SINE Alu 1 311 0 264 137 0 0 chr11 12903978 12904029 -135879443 + (A)n Simple_repeat Simple_repeat 1 51 0 395 229 137 0 chr11 12904182 12904313 -135879159 - MIR SINE MIR -37 225 77 254 246 8 102 chr11 12904373 12904491 -135878981 + MER34 LTR ERV1 41 147 -395 1576 193 20 7 chr11 12904806 12905107 -135878365 + AluJb SINE Alu 1 305 -7 240 170 75 0 chr11 12905117 12905170 -135878302 + Alu SINE Alu 246 302 0 854 119 33 12 chr11 12905175 12905431 -135878041 + GA-rich Low_complexity Low_complexity 1 261 0 380 292 50 0 chr11 12906865 12906985 -135876487 - L2 LINE L2 0 3272 3147 411 290 51 18 chr11 12907229 12907446 -135876026 - L2 LINE L2 -501 2813 2590 362 253 11 11 chr11 12907924 12908011 -135875461 + MIR SINE MIR 21 107 -155 336 317 41 24 chr11 12908151 12908274 -135875198 + L2 LINE L2 3144 3268 -4 986 323 100 29 chr11 12908477 12909567 -135873905 + L2 LINE L2 2147 3309 -4 2112 215 16 49 chr11 12909914 12910520 -135872952 + LTR27 LTR ERV1 3 1232 -141 2223 124 0 7 chr11 12911134 12911441 -135872031 + AluSx SINE Alu 1 305 -7 378 290 143 51 chr11 12911460 12911677 -135871795 - MIR SINE MIR -20 242 6 696 220 77 0 chr11 12911747 12911915 -135871557 - L1MD2 LINE L1 -18 6341 6161 5709 36 7 0 chr11 12912087 12912790 -135870682 - L1PA5 LINE L1 -226 5928 5222 1519 174 70 86 chr11 12913239 12913612 -135869860 + MLT1B LTR MaLR 1 367 -23 242 145 53 26 chr11 12913612 12913688 -135869784 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 192 152 0 0 chr11 12913716 12913749 -135869723 + MIR SINE MIR 78 110 -152 543 273 82 8 chr11 12913811 12914120 -135869352 + MLT1I LTR MaLR 1 370 -39 1524 199 0 33 chr11 12914754 12915056 -135868416 + AluJo SINE Alu 4 295 -17 274 182 36 0 chr11 12915127 12915182 -135868290 + L2 LINE L2 3254 3310 -3 241 252 90 27 chr11 12915193 12915304 -135868168 + MIR SINE MIR 25 142 -120 318 243 45 90 chr11 12916274 12916451 -135867021 + L2 LINE L2 2336 2504 -810 303 299 111 8 chr11 12918528 12918645 -135864827 + L2 LINE L2 3183 3311 -2 614 267 74 0 chr11 12919186 12919362 -135864110 + MIR SINE MIR 74 262 0 1289 258 109 28 chr11 12919671 12920066 -135863406 - LTR16A LTR ERVL -6 444 18 2388 200 114 137 chr11 12920909 12921771 -135861701 + L1MC4 LINE L1 6356 7236 -806 232 31 0 0 chr11 12921771 12921803 -135861669 + MADE1 DNA Mariner 1 32 -48 1898 70 8 0 chr11 12921803 12922070 -135861402 + L1PA8 LINE L1 5912 6180 0 455 84 0 56 chr11 12922075 12922146 -135861326 - MADE1 DNA Mariner -12 68 2 2388 200 114 137 chr11 12922146 12922447 -135861025 + L1MC4 LINE L1 7239 7599 -443 3160 178 24 43 chr11 12922455 12922541 -135860931 + L1MB7 LINE L1 5478 5564 -620 2256 82 26 10 chr11 12922541 12922844 -135860628 + AluSg SINE Alu 1 308 -2 3160 178 24 43 chr11 12922844 12923477 -135859995 + L1MB7 LINE L1 5564 6183 -1 719 313 108 33 chr11 12923591 12924074 -135859398 - L2 LINE L2 -1391 1923 1405 1916 249 69 68 chr11 12924075 12924781 -135858691 - MER72 LTR ERV1 -10 712 6 427 255 108 19 chr11 12924858 12925015 -135858457 + MIR SINE MIR 86 256 -6 264 304 35 61 chr11 12925071 12925186 -135858286 + L2 LINE L2 3190 3301 -12 282 346 28 22 chr11 12925210 12925389 -135858083 - MIR SINE MIR -14 248 69 2017 134 3 0 chr11 12925860 12926175 -135857297 - AluSq SINE Alu 0 316 1 439 59 15 15 chr11 12926525 12926593 -135856879 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 568 257 80 33 chr11 12926606 12926906 -135856566 - L1MC5 LINE L1 -387 7574 7261 220 299 75 19 chr11 12927095 12927202 -135856270 - L2 LINE L2 -1 3271 3159 222 303 103 49 chr11 12929013 12929198 -135854274 + MIR SINE MIR 61 255 -7 698 293 108 13 chr11 12929251 12929483 -135853989 + MIR SINE MIR 8 261 -1 202 256 0 0 chr11 12929962 12930005 -135853467 + A-rich Low_complexity Low_complexity 1 43 0 2554 38 0 0 chr11 12930501 12930793 -135852679 - AluY SINE Alu -19 292 1 326 170 2 31 chr11 12931231 12931307 -135852165 + L1M2 LINE L1 5767 5841 -339 279 0 0 0 chr11 12931395 12931426 -135852046 + (CA)n Simple_repeat Simple_repeat 1 31 0 408 284 149 37 chr11 12931433 12931754 -135851718 + L2 LINE L2 2231 2587 -727 8091 127 19 3 chr11 12931935 12933144 -135850328 + Tigger3b DNA MER2_type 4 1231 0 276 306 101 44 chr11 12933229 12933592 -135849880 + L2 LINE L2 2683 3061 -211 8036 136 11 11 chr11 12933621 12933953 -135849519 - HSMAR2 DNA Mariner -68 1234 903 13107 81 0 0 chr11 12933953 12936389 -135847083 + L1PA7 LINE L1 3709 6149 -5 8036 136 11 11 chr11 12936389 12937289 -135846183 - HSMAR2 DNA Mariner -399 903 3 287 262 24 24 chr11 12937485 12937569 -135845903 - HAL1b LINE L1 -437 911 828 22 88 0 0 chr11 12938224 12938281 -135845191 + AT_rich Low_complexity Low_complexity 1 57 0 245 316 55 33 chr11 12938289 12938564 -135844908 - L1M4 LINE L1 -2988 3158 2878 22 56 0 0 chr11 12938601 12938637 -135844835 + AT_rich Low_complexity Low_complexity 1 36 0 1093 243 98 3 chr11 12938866 12939183 -135844289 + L2 LINE L2 2403 2749 -565 346 148 56 0 chr11 12939183 12939237 -135844235 - Tigger3(Golem) DNA MER2_type -1 3028 2972 * 1863 93 7 7 chr11 12939236 12939505 -135843967 - Tigger3(Golem) DNA MER2_type -226 2803 2535 481 296 147 75 chr11 12940696 12941353 -135842119 + L2 LINE L2 2571 3270 -2 2299 93 0 7 chr11 12941457 12941757 -135841715 + AluSg SINE Alu 1 298 -12 322 285 75 92 chr11 12942317 12942675 -135840797 - L2 LINE L2 -4 3268 2917 420 228 119 0 chr11 12942738 12942839 -135840633 + MER94 DNA DNA 1 113 -21 1677 158 63 36 chr11 12943042 12943084 -135840388 - THE1C LTR MaLR 0 428 389 2303 108 0 0 chr11 12943084 12943405 -135840067 + AluSq SINE Alu 1 313 0 1677 158 63 36 chr11 12943405 12943454 -135840018 - THE1C LTR MaLR -39 389 343 4444 92 37 2 chr11 12943454 12944051 -135839421 - L1PA10 LINE L1 -5 6163 5546 1677 158 63 36 chr11 12944051 12944377 -135839095 - THE1C LTR MaLR -85 343 1 234 268 0 122 chr11 12944416 12944539 -135838933 + L2 LINE L2 3150 3257 -15 585 255 112 48 chr11 12944547 12944798 -135838674 + L2 LINE L2 3042 3308 -5 287 291 201 0 chr11 12946272 12946406 -135837066 - L2 LINE L2 0 3272 3112 190 261 0 0 chr11 12947445 12947491 -135835981 - MIR SINE MIR -65 143 98 242 279 109 24 chr11 12947780 12947945 -135835527 + MIR3 SINE MIR 9 187 -21 1518 252 94 29 chr11 12948692 12948738 -135834734 - MLT2B1 LTR ERVL 0 520 478 306 0 0 0 chr11 12948738 12948772 -135834700 + (TG)n Simple_repeat Simple_repeat 2 35 0 1518 252 94 29 chr11 12948772 12948959 -135834513 - MLT2B1 LTR ERVL -42 478 305 297 0 0 0 chr11 12948959 12948992 -135834480 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1518 252 94 29 chr11 12948992 12949245 -135834227 - MLT2B1 LTR ERVL -215 305 1 249 283 43 11 chr11 12950174 12950266 -135833206 - LTR67 LTR ERVL -75 482 388 1882 154 51 0 chr11 12950849 12951141 -135832331 - AluJb SINE Alu -5 307 1 181 282 24 89 chr11 12951166 12951290 -135832182 - L2 LINE L2 0 3272 3157 460 321 23 0 chr11 12951355 12951486 -135831986 + MER94 DNA DNA 1 134 0 1923 153 3 16 chr11 12951540 12951848 -135831624 - AluSx SINE Alu -8 304 1 695 257 77 80 chr11 12951950 12952154 -135831318 - MLT1K LTR MaLR -19 569 365 2351 153 80 5 chr11 12952154 12952552 -135830920 - MSTA LTR MaLR 0 428 1 695 257 77 80 chr11 12952552 12952736 -135830736 - MLT1K LTR MaLR -223 365 182 726 242 76 114 chr11 12952806 12953307 -135830165 + LTR38 LTR ERV1 50 541 -15 1336 183 71 11 chr11 12953750 12954018 -135829454 - AluJo SINE Alu -18 294 11 323 329 63 0 chr11 12954026 12954169 -135829303 + MIR SINE MIR 70 221 -41 2097 133 3 0 chr11 12954205 12954499 -135828973 - AluSq SINE Alu -18 295 1 436 234 95 7 chr11 12954785 12954922 -135828550 + MIR SINE MIR 85 233 -29 1772 169 13 13 chr11 12955608 12955916 -135827556 - AluJb SINE Alu -3 309 2 597 283 25 29 chr11 12955916 12956156 -135827316 - LTR16A1 LTR ERVL -6 451 213 212 255 20 0 chr11 12956387 12956438 -135827034 - L3 LINE CR1 -204 1373 1322 190 339 18 0 chr11 12956459 12956515 -135826957 - L2 LINE L2 -8 3264 3208 332 344 16 0 chr11 12956515 12956640 -135826832 - L3 LINE CR1 -829 748 622 2003 125 3 56 chr11 12956964 12957284 -135826188 + AluSx SINE Alu 1 303 -9 28 91 0 0 chr11 12957310 12957387 -135826085 + AT_rich Low_complexity Low_complexity 1 77 0 236 279 0 0 chr11 12958060 12958121 -135825351 + L1M4 LINE L1 3881 3941 -2205 409 264 0 98 chr11 12958199 12958362 -135825110 - MIR SINE MIR -21 241 95 631 251 81 51 chr11 12958670 12958767 -135824705 + MIR SINE MIR 14 107 -155 9254 161 22 2 chr11 12958767 12959498 -135823974 - L1PA13 LINE L1 0 6163 5448 1534 186 33 20 chr11 12959498 12959799 -135823673 - AluJb SINE Alu -7 305 1 9254 161 22 2 chr11 12959799 12961414 -135822058 - L1PA13 LINE L1 -715 5448 3793 631 251 81 51 chr11 12961414 12961551 -135821921 + MIR SINE MIR 107 255 -7 570 212 114 8 chr11 12961625 12961757 -135821715 + MER5A DNA MER1_type 1 146 -43 1836 253 48 23 chr11 12961757 12962235 -135821237 + MLT1F LTR MaLR 1 490 -52 7061 43 1 1 chr11 12962248 12963088 -135820384 - L1PA5 LINE L1 -4 6150 5311 426 138 0 0 chr11 12963103 12963168 -135820304 + MLT1F LTR MaLR 501 565 -2 262 235 0 0 chr11 12963170 12963221 -135820251 + MER5A DNA MER1_type 139 189 0 2214 108 3 13 chr11 12963304 12963620 -135819852 + AluSq SINE Alu 1 313 0 197 294 24 24 chr11 12963689 12963774 -135819698 + L3 LINE CR1 1065 1149 -428 1035 242 58 31 chr11 12965788 12966239 -135817233 - Charlie2 DNA MER1_type -1 2861 2399 * 2177 277 70 45 chr11 12966234 12967062 -135816410 - Charlie2b DNA MER1_type -1741 1041 193 216 196 0 0 chr11 12967082 12967128 -135816344 + A-rich Low_complexity Low_complexity 1 46 0 273 292 28 0 chr11 12967221 12967293 -135816179 - LTR67 LTR ERVL -370 187 114 215 336 167 9 chr11 12967495 12967819 -135815653 + L2 LINE L2 2353 2727 -587 826 208 60 0 chr11 12967842 12968010 -135815462 + MER5B DNA MER1_type 1 178 0 308 263 70 32 chr11 12968051 12968207 -135815265 + L2 LINE L2 2845 3006 -266 2817 3 0 7 chr11 12968296 12968601 -135814871 + AluYa5 SINE Alu 1 303 -8 189 121 0 0 chr11 12968724 12968757 -135814715 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 210 171 0 0 chr11 12969022 12969057 -135814415 + (TTA)n Simple_repeat Simple_repeat 1 35 0 802 268 77 45 chr11 12969701 12970260 -135813212 - L1ME4a LINE L1 -41 6080 5504 252 301 36 0 chr11 12971277 12971360 -135812112 - MER117 DNA MER1_type 0 197 112 186 318 106 0 chr11 12971422 12971488 -135811984 + L2 LINE L2 3199 3271 -1 215 316 88 52 chr11 12971869 12972062 -135811410 - MIR SINE MIR -41 221 22 395 134 0 56 chr11 12972202 12972344 -135811128 + (CAGAGA)n Simple_repeat Simple_repeat 5 138 0 202 244 0 0 chr11 12972478 12972523 -135810949 + T-rich Low_complexity Low_complexity 1 45 0 1653 183 30 21 chr11 12973603 12973937 -135809535 + L1MA9 LINE L1 5972 6308 -4 2109 132 3 10 chr11 12974971 12975282 -135808190 + AluSx SINE Alu 1 309 -3 466 240 78 0 chr11 12975451 12975605 -135807867 + HAL1 LINE L1 2237 2402 -105 378 297 93 0 chr11 12975812 12975930 -135807542 + L2 LINE L2 3136 3264 -8 343 262 223 53 chr11 12976360 12976566 -135806906 - MIR SINE MIR 0 262 22 349 269 11 0 chr11 12976806 12976899 -135806573 - MIR SINE MIR -2 260 167 2125 111 0 0 chr11 12976943 12977251 -135806221 + AluSg SINE Alu 1 308 0 610 200 9 0 chr11 12977265 12977375 -135806097 + MER58A DNA MER1_type 5 115 0 320 64 0 21 chr11 12977376 12977423 -135806049 - AluSc SINE Alu -172 127 82 559 77 13 0 chr11 12977523 12977601 -135805871 - AluY SINE Alu -232 79 1 363 204 158 0 chr11 12977601 12977753 -135805719 + L1MD1 LINE L1 4318 4493 -1653 4942 174 40 14 chr11 12977764 12979195 -135804277 + L1MD1 LINE L1 4769 6235 -7 26 30 0 0 chr11 12979360 12979393 -135804079 + AT_rich Low_complexity Low_complexity 1 33 0 403 255 45 41 chr11 12979461 12979642 -135803830 - MIR SINE MIR -67 141 11 645 314 75 9 chr11 12979650 12979876 -135803596 + MIR SINE MIR 8 248 -14 938 197 86 4 chr11 12981068 12981301 -135802171 + Charlie1 DNA MER1_type 1721 1972 -789 258 291 203 11 chr11 12981328 12981510 -135801962 - L2 LINE L2 -1094 2220 2004 532 210 168 0 chr11 12982131 12982298 -135801174 - MER5C DNA MER1_type -2 322 128 767 173 60 0 chr11 12982860 12983010 -135800462 - FRAM SINE Alu -18 158 1 210 71 0 0 chr11 12983803 12983831 -135799641 + (A)n Simple_repeat Simple_repeat 1 28 0 1948 148 3 3 chr11 12983879 12984170 -135799302 + AluSx SINE Alu 3 293 -19 2084 143 0 3 chr11 12984354 12984655 -135798817 - AluSx SINE Alu -12 300 1 6520 57 5 8 chr11 12984863 12985712 -135797760 + L1PA6 LINE L1 5308 6153 -1 25 31 0 0 chr11 12985713 12985745 -135797727 + AT_rich Low_complexity Low_complexity 1 32 0 258 179 0 90 chr11 12986418 12986459 -135797013 - MER5C DNA MER1_type -200 124 92 2099 122 7 3 chr11 12986459 12986746 -135796726 - AluSg SINE Alu -22 288 1 258 179 0 90 chr11 12986746 12986782 -135796690 - MER5C DNA MER1_type -232 92 54 339 85 0 0 chr11 12987060 12987107 -135796365 + (TG)n Simple_repeat Simple_repeat 2 48 0 26 88 0 0 chr11 12987366 12987434 -135796038 + AT_rich Low_complexity Low_complexity 1 68 0 344 295 93 51 chr11 12987611 12987848 -135795624 + L1MC/D LINE L1 5313 5559 -2249 464 308 49 45 chr11 12988486 12988733 -135794739 - MIR SINE MIR -13 249 2 3316 72 28 0 chr11 12990087 12990517 -135792955 + MLT2A1 LTR ERVL 1 442 -2 1069 264 108 24 chr11 12990517 12990963 -135792509 - LTR33 LTR ERVL -14 507 21 1453 165 12 5 chr11 12991269 12991607 -135791865 + MSTB LTR MaLR 1 426 0 2681 151 15 0 chr11 12991607 12992072 -135791400 + MSTB-int LTR MaLR 1 472 -1179 611 261 72 57 chr11 12992084 12992559 -135790913 - L1MEd LINE L1 -3220 3721 3240 232 211 0 53 chr11 12992880 12992956 -135790516 - HAL1 LINE L1 -904 1603 1532 330 274 86 43 chr11 12993138 12993393 -135790079 - L1MEd LINE L1 -4908 2023 1758 235 230 62 45 chr11 12993485 12993663 -135789809 - L1MEd LINE L1 -4961 1462 1282 2354 75 34 0 chr11 12993663 12993957 -135789515 + AluY SINE Alu 1 304 -7 210 139 0 0 chr11 12994133 12994169 -135789303 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 760 152 46 53 chr11 12994488 12994639 -135788833 - MER5B DNA MER1_type -28 150 1 594 242 45 93 chr11 12994696 12994965 -135788507 + MER102b DNA MER1_type 54 309 -32 297 0 0 0 chr11 12995417 12995450 -135788022 + (TG)n Simple_repeat Simple_repeat 1 33 0 972 134 0 0 chr11 12995450 12995607 -135787865 + (TA)n Simple_repeat Simple_repeat 1 157 0 5069 211 19 16 chr11 12996206 12997555 -135785917 + L1 LINE L1 2798 4151 -1995 1021 184 40 5 chr11 12997557 12997758 -135785714 - MSTA LTR MaLR 0 428 221 264 219 0 0 chr11 12997774 12997838 -135785634 + L1M4 LINE L1 3179 3242 -2904 932 121 57 0 chr11 12997840 12997997 -135785475 + MSTA LTR MaLR 42 207 -221 527 71 24 0 chr11 12997985 12998069 -135785403 - MSTA LTR MaLR -342 86 1 * 1507 91 45 0 chr11 12998085 12998283 -135785189 + AluSx SINE Alu 1 207 -105 4438 64 0 2 chr11 12998386 12998949 -135784523 + L1PA6 LINE L1 5593 6154 0 347 285 41 49 chr11 12999229 12999352 -135784120 - MIR SINE MIR -67 141 20 209 341 32 16 chr11 12999575 12999701 -135783771 + L2 LINE L2 2599 2726 -588 274 267 103 26 chr11 12999751 12999867 -135783605 + MIR3 SINE MIR 70 194 -14 311 154 0 0 chr11 12999893 12999945 -135783527 + A-rich Low_complexity Low_complexity 1 52 0 224 240 40 0 chr11 13000032 13000082 -135783390 + MIR SINE MIR 53 104 -158 212 261 101 0 chr11 13000408 13000477 -135782995 + L2 LINE L2 3238 3313 0 804 249 173 25 chr11 13000908 13001266 -135782206 - L2 LINE L2 -30 3283 2873 35 24 0 0 chr11 13001384 13001426 -135782046 + AT_rich Low_complexity Low_complexity 1 42 0 387 241 29 95 chr11 13001967 13002104 -135781368 + MIR3 SINE MIR 15 142 -66 308 253 13 13 chr11 13003058 13003137 -135780335 + L2 LINE L2 3223 3301 -12 486 236 57 48 chr11 13003355 13003669 -135779803 - L1M4 LINE L1 -2736 3410 3094 1819 180 0 10 chr11 13003697 13004002 -135779470 - AluJo SINE Alu -2 310 9 5532 194 65 3 chr11 13004070 13005186 -135778286 + MSTB-int LTR MaLR 466 1651 0 2390 183 9 12 chr11 13005186 13005613 -135777859 + MSTB LTR MaLR 1 426 0 726 211 106 0 chr11 13005695 13005875 -135777597 - L2 LINE L2 0 3313 3115 181 301 39 68 chr11 13005981 13006084 -135777388 + L3 LINE CR1 60 159 -1418 270 258 97 32 chr11 13006181 13006274 -135777198 - MLT2E LTR ERVL -473 155 57 21 57 0 0 chr11 13006367 13006402 -135777070 + AT_rich Low_complexity Low_complexity 1 35 0 1138 256 77 59 chr11 13006412 13007040 -135776432 + L1ME LINE L1 4416 5062 -1084 2191 107 17 0 chr11 13007040 13007330 -135776142 - AluSg SINE Alu -15 295 1 1138 256 77 59 chr11 13007330 13007494 -135775978 + L1ME LINE L1 5062 5222 -924 321 209 114 19 chr11 13007496 13007601 -135775871 + MLT1H LTR MaLR 1 115 -434 258 152 0 0 chr11 13007747 13007793 -135775679 + MLT1G LTR MaLR 540 585 -5 1187 226 40 13 chr11 13007815 13008192 -135775280 + L1ME LINE L1 5317 5703 -467 639 223 22 44 chr11 13008172 13008401 -135775071 + L1ME LINE L1 4973 5196 -950 * 4865 148 3 5 chr11 13008395 13009159 -135774313 + L1PA15-16 LINE L1 12 773 -6076 2369 62 12 0 chr11 13009164 13009501 -135773971 + L1PA15-16 LINE L1 1757 2097 -4752 416 79 13 13 chr11 13009514 13009590 -135773882 - L1PA15-16 LINE L1 -4663 2186 2111 * 3091 252 23 8 chr11 13009581 13010504 -135772968 + L1PA15-16 LINE L1 2525 3461 -3388 545 299 89 82 chr11 13010611 13011096 -135772376 + L2 LINE L2 2806 3293 -20 215 290 127 68 chr11 13011121 13011624 -135771848 - L2 LINE L2 -1242 2072 1540 454 340 24 15 chr11 13011672 13011878 -135771594 - MIR SINE MIR -54 208 1 224 298 57 50 chr11 13012358 13012499 -135770973 - L2 LINE L2 -2570 744 603 572 258 129 58 chr11 13012941 13013075 -135770397 + MIR SINE MIR 6 129 -133 1636 163 33 39 chr11 13013075 13013382 -135770090 + AluJb SINE Alu 1 305 -7 572 258 129 58 chr11 13013382 13013487 -135769985 + MIR SINE MIR 129 262 0 1349 146 13 4 chr11 13013799 13014038 -135769434 + L1MB3 LINE L1 5935 6175 -8 248 269 45 45 chr11 13014257 13014391 -135769081 + L1ME LINE L1 5518 5651 -470 1782 161 4 4 chr11 13014393 13014673 -135768799 + AluSx SINE Alu 1 280 -32 1301 92 58 0 chr11 13014673 13014846 -135768626 + AluY SINE Alu 97 279 -32 261 0 0 0 chr11 13014861 13014890 -135768582 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 48 0 0 chr11 13015778 13015820 -135767652 + AT_rich Low_complexity Low_complexity 1 42 0 618 150 30 8 chr11 13015925 13016058 -135767414 + L1MB2 LINE L1 5935 6070 -101 238 292 104 58 chr11 13016080 13016234 -135767238 - L2 LINE L2 -236 3036 2876 191 250 12 0 chr11 13016470 13016554 -135766918 + GA-rich Low_complexity Low_complexity 2 86 0 399 296 75 80 chr11 13016837 13017402 -135766070 - L2 LINE L2 -85 3187 2635 338 261 140 7 chr11 13019158 13019338 -135764134 + MIR SINE MIR 63 262 0 252 301 92 6 chr11 13019578 13019741 -135763731 + L2 LINE L2 2703 2879 -435 266 369 51 41 chr11 13019768 13019963 -135763509 + L2 LINE L2 2982 3178 -94 332 123 0 31 chr11 13020046 13020111 -135763361 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 404 245 176 15 chr11 13020899 13021103 -135762369 + MIR SINE MIR 20 256 -6 430 258 0 41 chr11 13021238 13021335 -135762137 - L2 LINE L2 0 3272 3180 994 182 16 31 chr11 13021400 13021592 -135761880 - MER5A DNA MER1_type 0 189 1 436 335 81 0 chr11 13022215 13022400 -135761072 + MIR SINE MIR 49 248 -14 209 348 127 17 chr11 13022589 13022770 -135760702 - L2 LINE L2 -1335 1979 1779 2177 98 3 0 chr11 13022802 13023089 -135760383 + AluSp SINE Alu 1 288 -25 213 39 0 0 chr11 13023859 13023885 -135759587 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2008 131 3 10 chr11 13024158 13024456 -135759016 - AluSq SINE Alu -17 296 1 470 270 40 81 chr11 13024599 13024773 -135758699 + MIR SINE MIR 16 182 -80 871 257 40 32 chr11 13024775 13025028 -135758444 + MIR SINE MIR 8 262 0 186 143 0 0 chr11 13025093 13025128 -135758344 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 27 0 0 0 chr11 13026397 13026424 -135757048 + AT_rich Low_complexity Low_complexity 1 27 0 240 111 0 0 chr11 13027034 13027079 -135756393 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 498 313 128 4 chr11 13027082 13027325 -135756147 - L2 LINE L2 -20 3293 3021 237 197 71 79 chr11 13027611 13027738 -135755734 - L2 LINE L2 -211 3061 2936 670 113 35 21 chr11 13027738 13027880 -135755592 + CT-rich Low_complexity Low_complexity 3 146 0 558 192 10 0 chr11 13028494 13028598 -135754874 - Tigger5 DNA MER2_type 0 2323 2219 246 245 0 0 chr11 13028593 13028646 -135754826 - Tigger5 DNA MER2_type -2270 53 1 * 397 294 125 19 chr11 13028646 13028850 -135754622 + L1ME4a LINE L1 5715 5896 -225 776 188 16 0 chr11 13028850 13028978 -135754494 + FLAM_A SINE Alu 1 130 -3 397 294 125 19 chr11 13028978 13029141 -135754331 + L1ME4a LINE L1 5896 6121 0 507 298 50 22 chr11 13029671 13029993 -135753479 - L1M4 LINE L1 -1083 5063 4733 320 310 0 0 chr11 13030596 13030683 -135752789 + MER5B DNA MER1_type 68 154 -24 210 294 44 0 chr11 13030731 13030799 -135752673 + MIR SINE MIR 111 181 -81 * 856 241 5 0 chr11 13030797 13030988 -135752484 - MIR SINE MIR 0 262 71 191 247 178 0 chr11 13031011 13031084 -135752388 + MIR SINE MIR 167 252 -10 1128 302 186 8 chr11 13031450 13032192 -135751280 - L3 LINE CR1 -100 1477 604 695 228 56 0 chr11 13032243 13032423 -135751049 + MIR SINE MIR 52 241 -21 578 262 87 0 chr11 13032445 13032594 -135750878 - L3 LINE CR1 -982 595 434 23 33 0 0 chr11 13034055 13034085 -135749387 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 13034208 13034236 -135749236 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 13034311 13034346 -135749126 + GC_rich Low_complexity Low_complexity 1 35 0 342 333 21 36 chr11 13036222 13036414 -135747058 + MIR3 SINE MIR 17 205 -3 295 265 191 5 chr11 13037231 13037420 -135746052 + MIR SINE MIR 15 238 -24 1746 166 28 0 chr11 13037840 13038129 -135745343 - AluJb SINE Alu -15 297 1 681 278 43 17 chr11 13038489 13038723 -135744749 + MIR SINE MIR 14 253 -9 200 127 309 0 chr11 13039609 13039664 -135743808 + MIR SINE MIR 82 153 -109 570 225 151 23 chr11 13039673 13039891 -135743581 - MIR SINE MIR 0 262 17 3801 103 14 4 chr11 13040021 13040574 -135742898 + L1PA16 LINE L1 5599 6157 -9 3786 181 23 74 chr11 13040583 13041155 -135742317 + L1MB5 LINE L1 5114 5714 -620 1667 180 0 46 chr11 13041155 13041461 -135742011 + AluJo SINE Alu 1 292 -20 3786 181 23 74 chr11 13041461 13042016 -135741456 + L1MB5 LINE L1 5714 6334 0 380 200 139 9 chr11 13042014 13042129 -135741343 + L1MB4 LINE L1 6049 6178 -2 * 1072 274 80 38 chr11 13042138 13042565 -135740907 + L1ME3A LINE L1 5691 6135 -35 1857 149 3 3 chr11 13042852 13043134 -135740338 - AluJb SINE Alu -30 282 1 691 249 81 23 chr11 13043685 13043906 -135739566 + MLT1J2 LTR MaLR 5 238 -212 473 285 86 19 chr11 13044314 13044581 -135738891 + L1ME4a LINE L1 5619 5903 -218 606 152 72 58 chr11 13045054 13045192 -135738280 + AluJb SINE Alu 173 312 0 234 270 171 0 chr11 13045929 13046040 -135737432 + L2 LINE L2 3184 3313 0 379 283 136 11 chr11 13046441 13046632 -135736840 - MIR SINE MIR -34 228 14 337 267 115 30 chr11 13047032 13047197 -135736275 + MIR SINE MIR 8 186 -76 310 263 53 0 chr11 13047295 13047390 -135736082 + L1MC4a LINE L1 5542 5641 -480 356 237 112 26 chr11 13047422 13047574 -135735898 + L1MC4a LINE L1 5723 5887 -1921 282 29 0 0 chr11 13047575 13047610 -135735862 + (CA)n Simple_repeat Simple_repeat 1 35 0 286 359 75 35 chr11 13047698 13048016 -135735456 + L2 LINE L2 2887 3217 -55 364 270 47 62 chr11 13049107 13049318 -135734154 - L2 LINE L2 -8 3305 3098 1562 337 84 24 chr11 13049567 13050818 -135732654 - L2 LINE L2 -199 3073 1747 242 258 210 44 chr11 13050940 13051169 -135732303 - L2 LINE L2 -2808 506 240 2112 99 21 7 chr11 13051173 13051482 -135731990 + AluSc SINE Alu 1 309 0 259 311 92 8 chr11 13052537 13052656 -135730816 - L2 LINE L2 -229 3043 2915 258 286 57 19 chr11 13052785 13052890 -135730582 - L2 LINE L2 -490 2824 2716 385 249 40 79 chr11 13053389 13053516 -135729956 + MIR SINE MIR 37 157 -105 2267 101 0 3 chr11 13053516 13053812 -135729660 + AluSq SINE Alu 3 297 -16 385 249 40 79 chr11 13053812 13053861 -135729611 + MIR SINE MIR 157 206 -56 264 282 13 13 chr11 13055465 13055543 -135727929 + CT-rich Low_complexity Low_complexity 3 80 0 418 242 46 134 chr11 13055796 13055930 -135727542 + MIR SINE MIR 21 134 -128 1778 178 20 0 chr11 13055930 13056222 -135727250 + AluJb SINE Alu 1 298 -14 418 242 46 134 chr11 13056222 13056281 -135727191 + MIR SINE MIR 134 197 -65 4295 64 2 6 chr11 13056543 13057089 -135726383 + L1PA8 LINE L1 5629 6172 0 25 0 0 0 chr11 13057118 13057143 -135726329 + AT_rich Low_complexity Low_complexity 1 25 0 1932 128 69 3 chr11 13058585 13058874 -135724598 - AluJo SINE Alu -4 308 1 297 0 0 0 chr11 13059068 13059101 -135724371 + (TG)n Simple_repeat Simple_repeat 2 34 0 2307 81 3 0 chr11 13059123 13059407 -135724065 - AluSp SINE Alu -28 285 1 228 182 0 0 chr11 13061677 13061721 -135721751 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 119 17 0 chr11 13061729 13061788 -135721684 + (TA)n Simple_repeat Simple_repeat 1 60 0 1015 258 133 28 chr11 13061946 13062722 -135720750 + L2 LINE L2 2451 3313 0 376 307 40 7 chr11 13063324 13063474 -135719998 - MER117 DNA MER1_type -37 160 6 251 208 0 0 chr11 13064957 13065010 -135718462 - L2 LINE L2 -3 3269 3217 499 253 114 6 chr11 13065096 13065262 -135718210 + MIR SINE MIR 15 198 -64 516 279 137 24 chr11 13065965 13066302 -135717170 + L1MC4 LINE L1 7656 8030 -12 383 282 25 43 chr11 13066546 13066713 -135716759 - MIR SINE MIR -57 205 42 1314 272 21 3 chr11 13066748 13067083 -135716389 - LTR16C LTR ERVL 0 491 151 638 310 40 35 chr11 13068384 13068610 -135714862 - MIR SINE MIR -15 247 21 2010 161 62 5 chr11 13068659 13068892 -135714580 - L1MB4 LINE L1 -1 6179 5961 2163 123 7 0 chr11 13068892 13069194 -135714278 + AluSq SINE Alu 1 304 -9 2010 161 62 5 chr11 13069194 13069383 -135714089 - L1MB4 LINE L1 -219 5961 5733 393 247 142 12 chr11 13069823 13069985 -135713487 - MIR SINE MIR -7 255 73 484 307 80 13 chr11 13069991 13070229 -135713243 - L1ME LINE L1 -308 5813 5560 183 100 0 0 chr11 13070334 13070364 -135713108 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 403 225 80 152 chr11 13070628 13071068 -135712404 + L1ME4a LINE L1 5641 6048 -73 872 252 20 20 chr11 13071750 13071996 -135711476 + MIR SINE MIR 7 252 -10 438 202 20 10 chr11 13072286 13072385 -135711087 - MIR SINE MIR -69 193 94 1796 159 33 0 chr11 13073027 13073298 -135710174 + AluJb SINE Alu 5 284 -28 405 0 0 0 chr11 13073298 13073343 -135710129 + (CA)n Simple_repeat Simple_repeat 2 46 0 2360 109 0 0 chr11 13073967 13074271 -135709201 - AluSx SINE Alu -8 304 1 561 203 0 0 chr11 13074313 13074420 -135709052 - MER5A DNA MER1_type -79 110 4 214 312 0 0 chr11 13074592 13074669 -135708803 + MIR SINE MIR 175 251 -11 519 260 8 16 chr11 13075175 13075302 -135708170 + L2 LINE L2 3188 3313 0 393 208 30 56 chr11 13075336 13075473 -135707999 + MIR SINE MIR 17 146 -62 435 278 75 75 chr11 13076134 13076361 -135707111 - MIR SINE MIR -2 260 34 234 258 99 60 chr11 13076559 13076710 -135706762 - MIR SINE MIR -30 232 76 367 286 101 73 chr11 13077115 13077363 -135706109 - MIR SINE MIR 0 262 8 222 200 100 14 chr11 13077493 13077563 -135705909 - MIR SINE MIR -62 200 125 1421 127 0 0 chr11 13077915 13078112 -135705360 + AluSg/x SINE Alu 84 280 -32 204 40 0 0 chr11 13078112 13078137 -135705335 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 22 35 0 0 chr11 13078447 13078476 -135704996 + AT_rich Low_complexity Low_complexity 1 29 0 914 155 0 0 chr11 13078674 13078816 -135704656 - FLAM_C SINE Alu -1 142 1 1142 194 138 3 chr11 13078961 13079244 -135704228 + MER33 DNA MER1_type 3 323 -1 784 180 112 0 chr11 13079517 13079678 -135703794 + MIR SINE MIR 36 214 -48 334 302 35 53 chr11 13079727 13079898 -135703574 - L1ME LINE L1 -690 5432 5267 259 340 0 30 chr11 13080344 13080444 -135703028 + MIR SINE MIR 34 130 -132 266 254 40 54 chr11 13080732 13080904 -135702568 - MIR SINE MIR -79 129 19 705 279 29 33 chr11 13080950 13081194 -135702278 + MIR SINE MIR 2 244 -18 2037 142 6 3 chr11 13081963 13082274 -135701198 - AluSx SINE Alu 0 312 1 762 274 48 36 chr11 13082593 13082841 -135700631 - MIR SINE MIR 0 262 12 264 315 14 0 chr11 13083045 13083118 -135700354 - L2 LINE L2 -30 3283 3210 21 0 0 0 chr11 13083945 13083966 -135699506 + AT_rich Low_complexity Low_complexity 1 21 0 701 205 0 0 chr11 13083966 13084083 -135699389 - FLAM_C SINE Alu -24 119 3 265 274 41 0 chr11 13084403 13084476 -135698996 + L2 LINE L2 3196 3271 -1 541 321 47 22 chr11 13084854 13085107 -135698365 - MIR SINE MIR -10 252 1 279 264 46 92 chr11 13085298 13085472 -135698000 + L2 LINE L2 2943 3108 -164 436 295 22 22 chr11 13086213 13086352 -135697120 + MIR SINE MIR 14 152 -110 431 185 37 0 chr11 13086357 13086438 -135697034 + Tigger3(Golem) DNA MER2_type 3 86 -2943 4340 116 52 13 chr11 13086523 13087240 -135696232 + Tigger3(Golem) DNA MER2_type 2278 3022 -7 460 237 51 17 chr11 13087290 13087408 -135696064 - MIR SINE MIR -105 157 36 903 222 143 17 chr11 13087440 13087670 -135695802 + MIR SINE MIR 2 260 -2 419 284 182 33 chr11 13087772 13087914 -135695558 - L3 LINE CR1 -307 1270 1151 1119 169 42 33 chr11 13087914 13088127 -135695345 - MER20 DNA MER1_type -1 218 4 419 284 182 33 chr11 13088127 13088319 -135695153 - L3 LINE CR1 -426 1151 886 183 366 158 12 chr11 13088478 13088642 -135694830 + L2 LINE L2 2993 3180 -92 268 290 30 20 chr11 13089108 13089208 -135694264 + MIR SINE MIR 37 137 -125 1969 196 62 3 chr11 13089220 13089588 -135693884 - MSTD LTR MaLR -4 392 3 249 353 39 0 chr11 13089602 13089704 -135693768 + MIR SINE MIR 155 260 -2 499 350 101 53 chr11 13089868 13090305 -135693167 - L2 LINE L2 0 3272 2815 871 249 145 39 chr11 13090574 13090645 -135692827 + L2 LINE L2 2651 2713 -600 2553 137 77 20 chr11 13090645 13091048 -135692424 - MSTC LTR MaLR 0 428 3 871 249 145 39 chr11 13091048 13091524 -135691948 + L2 LINE L2 2713 3251 -62 315 0 0 0 chr11 13091858 13091893 -135691579 + (TTA)n Simple_repeat Simple_repeat 1 35 0 552 296 91 14 chr11 13091909 13092129 -135691343 - MIR SINE MIR -18 244 8 201 244 0 0 chr11 13092544 13092589 -135690883 - MIR SINE MIR -56 206 162 232 339 86 0 chr11 13092815 13092937 -135690535 - MIR SINE MIR -63 145 14 2467 52 3 13 chr11 13093570 13093875 -135689597 + AluY SINE Alu 10 311 0 335 268 167 26 chr11 13093942 13094306 -135689166 - MLT1J LTR MaLR 0 511 39 331 259 100 62 chr11 13094570 13094746 -135688726 + MIR3 SINE MIR 5 181 -81 397 258 98 8 chr11 13095605 13095737 -135687735 + L1ME4a LINE L1 5975 6118 -3 255 314 67 0 chr11 13096499 13096604 -135686868 - L2 LINE L2 -19 3294 3183 216 191 0 0 chr11 13096605 13096647 -135686825 + GA-rich Low_complexity Low_complexity 1 42 0 182 246 35 18 chr11 13096738 13096795 -135686677 - MIR SINE MIR -133 75 18 21 36 0 0 chr11 13098399 13098427 -135685045 + AT_rich Low_complexity Low_complexity 1 28 0 286 299 106 29 chr11 13098668 13098875 -135684597 - L2 LINE L2 -556 2758 2536 204 346 0 29 chr11 13098949 13099053 -135684419 + L2 LINE L2 2890 2990 -282 * 334 265 77 8 chr11 13099034 13099151 -135684321 + MIR SINE MIR 60 184 -78 587 224 148 19 chr11 13099173 13099383 -135684089 + L2 LINE L2 2614 2850 -464 216 299 179 60 chr11 13099384 13099501 -135683971 + MER91C DNA MER1_type 1 131 -9 1204 234 158 31 chr11 13099504 13099802 -135683670 + L2 LINE L2 2842 3210 -103 208 27 54 27 chr11 13099802 13099839 -135683633 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1204 234 158 31 chr11 13099839 13099959 -135683513 + L2 LINE L2 3210 3313 0 191 313 47 116 chr11 13100053 13100328 -135683144 + L2 LINE L2 3006 3261 -11 244 317 58 8 chr11 13101471 13101591 -135681881 - L1ME LINE L1 -307 5814 5689 2072 125 4 0 chr11 13102227 13102533 -135680939 - AluSc SINE Alu 0 307 1 918 215 77 13 chr11 13103037 13103270 -135680202 - MIR SINE MIR -14 248 1 709 294 34 8 chr11 13104293 13104528 -135678944 - MIR SINE MIR 0 262 22 562 296 115 12 chr11 13104533 13104786 -135678686 - L2 LINE L2 0 3313 3035 1141 234 96 32 chr11 13104806 13105182 -135678290 - MLT1J2 LTR MaLR -29 421 22 1017 243 161 24 chr11 13105204 13105704 -135677768 - L2 LINE L2 -303 3010 2440 212 337 61 10 chr11 13106489 13106587 -135676885 - L2 LINE L2 -15 3257 3155 1524 246 12 10 chr11 13106635 13107046 -135676426 - L1M4 LINE L1 -1732 4414 4003 1496 231 90 38 chr11 13107044 13107443 -135676029 - L1MDa LINE L1 -6102 438 19 * 185 318 0 56 chr11 13107934 13108041 -135675431 - L2 LINE L2 -327 2986 2886 427 228 118 84 chr11 13108141 13108404 -135675068 - MLT1K LTR MaLR -176 412 141 190 316 89 32 chr11 13108536 13108694 -135674778 - L2 LINE L2 -568 2746 2580 1797 213 197 56 chr11 13109194 13109945 -135673527 - L2 LINE L2 -557 2757 1901 216 179 0 0 chr11 13110145 13110184 -135673288 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1196 168 5 5 chr11 13110198 13110407 -135673065 + L1MB3 LINE L1 5973 6181 -2 350 272 48 40 chr11 13110886 13111011 -135672461 - L2 LINE L2 -1 3312 3187 1413 171 0 0 chr11 13111824 13112041 -135671431 - MER58A DNA MER1_type -6 218 2 347 292 120 19 chr11 13114124 13114333 -135669139 - MIR SINE MIR -13 249 20 1098 147 9 76 chr11 13114610 13114835 -135668637 - MER20 DNA MER1_type 0 219 10 237 286 31 31 chr11 13114935 13115033 -135668439 - MIR SINE MIR -90 172 75 432 296 67 64 chr11 13115036 13115307 -135668165 + L2 LINE L2 2782 3073 -240 820 248 48 32 chr11 13115560 13115810 -135667662 - MIR SINE MIR -4 258 5 823 183 0 21 chr11 13116764 13116906 -135666566 + FRAM SINE Alu 23 161 -15 533 157 49 0 chr11 13116910 13117012 -135666460 + L1ME1 LINE L1 5189 5295 -851 2540 215 48 45 chr11 13117026 13117737 -135665735 + L1ME1 LINE L1 5355 6067 -99 283 274 69 29 chr11 13117679 13117753 -135665719 + L1MA10 LINE L1 6170 6251 -83 * 276 30 0 0 chr11 13117753 13117786 -135665686 + (CA)n Simple_repeat Simple_repeat 2 34 0 283 274 69 29 chr11 13117786 13117813 -135665659 + L1MA10 LINE L1 6251 6275 -59 320 86 0 121 chr11 13118446 13118504 -135664968 + U2 snRNA snRNA 1 51 -137 1136 190 30 9 chr11 13118761 13118993 -135664479 + L1MD2 LINE L1 5760 5996 -363 361 275 0 0 chr11 13119126 13119206 -135664266 + L2 LINE L2 3234 3313 0 1975 89 0 0 chr11 13119294 13119540 -135663932 + AluSc SINE Alu 32 277 -32 254 143 20 0 chr11 13119540 13119589 -135663883 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 826 179 0 0 chr11 13120710 13120833 -135662639 - FLAM_C SINE Alu -19 124 2 1962 152 0 19 chr11 13120948 13121263 -135662209 + AluJb SINE Alu 1 309 -3 1939 128 0 41 chr11 13121577 13121897 -135661575 + AluJo SINE Alu 6 312 0 473 299 109 65 chr11 13123721 13124106 -135659366 - L3 LINE CR1 -460 1117 716 324 274 26 21 chr11 13124124 13124237 -135659235 + MIR SINE MIR 32 147 -67 26 0 0 0 chr11 13125661 13125687 -135657785 + AT_rich Low_complexity Low_complexity 1 26 0 204 360 43 43 chr11 13126885 13127046 -135656426 - MIR3 SINE MIR -27 181 21 1768 213 81 88 chr11 13127159 13127951 -135655521 - L1MEc LINE L1 -1323 4892 4107 379 250 94 0 chr11 13127956 13128052 -135655420 - L1M4 LINE L1 -2368 3778 3674 371 219 17 17 chr11 13128052 13128171 -135655301 - L1M4 LINE L1 -3195 2951 2833 * 1165 253 102 0 chr11 13128170 13128574 -135654898 - L1MEc LINE L1 -2482 3733 3289 2562 223 50 51 chr11 13128575 13129394 -135654078 - L1MEc LINE L1 -3083 3132 2335 1623 119 0 4 chr11 13129394 13129641 -135653831 - AluJb SINE Alu 0 304 59 2562 223 50 51 chr11 13129641 13130350 -135653122 - L1MEc LINE L1 -3880 2335 1627 2978 263 64 21 chr11 13130481 13130748 -135652724 - L1MEc LINE L1 -4916 1299 1045 1102 132 22 44 chr11 13130748 13130975 -135652497 - L1MA5 LINE L1 -2 6298 6077 2978 263 64 21 chr11 13130975 13131952 -135651520 - L1MEc LINE L1 -5170 1045 40 774 184 178 0 chr11 13133588 13133751 -135649721 - MER58A DNA MER1_type -15 209 18 217 310 182 0 chr11 13134088 13134250 -135649222 - MIR SINE MIR -6 202 1 336 103 0 0 chr11 13134732 13134790 -135648682 + (GA)n Simple_repeat Simple_repeat 1 58 0 309 26 0 0 chr11 13134792 13134830 -135648642 + (TG)n Simple_repeat Simple_repeat 2 39 0 208 178 56 22 chr11 13134929 13135019 -135648453 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 1004 322 157 17 chr11 13135026 13135657 -135647815 + L2 LINE L2 1723 2441 -873 216 217 50 67 chr11 13135663 13135723 -135647749 + L2 LINE L2 3214 3272 0 1621 243 101 20 chr11 13135840 13136369 -135647103 + MLT1G LTR MaLR 32 583 -7 344 341 8 15 chr11 13136379 13136511 -135646961 + L2 LINE L2 2560 2690 -624 1953 216 145 98 chr11 13136635 13137662 -135645810 + L2 LINE L2 2205 3313 0 535 332 103 38 chr11 13137662 13138032 -135645440 + L2 LINE L2 2812 3205 -67 1161 141 15 5 chr11 13138124 13138330 -135645142 + L1PB2 LINE L1 5941 6148 -3 758 168 16 0 chr11 13138583 13138708 -135644764 - FLAM_C SINE Alu -4 129 3 262 233 189 11 chr11 13139305 13139395 -135644077 - L2 LINE L2 0 3313 3208 1593 137 4 0 chr11 13140082 13140339 -135643133 + AluSx SINE Alu 55 312 0 308 388 39 17 chr11 13141623 13141801 -135641671 - MIR3 SINE MIR -8 200 19 2242 100 6 10 chr11 13142228 13142539 -135640933 + AluY SINE Alu 1 310 -1 1383 112 0 0 chr11 13142539 13142726 -135640746 + AluSg/x SINE Alu 126 312 0 739 180 14 0 chr11 13142964 13143103 -135640369 - AluSg/x SINE Alu -6 306 166 317 106 0 0 chr11 13143103 13143150 -135640322 + LTR3b LTR ERVK 7 53 -384 387 216 27 63 chr11 13143352 13143463 -135640009 + L2 LINE L2 3155 3261 -11 232 273 61 15 chr11 13143506 13143572 -135639900 - L2 LINE L2 -43 3270 3202 387 0 0 0 chr11 13144901 13144944 -135638528 + (CA)n Simple_repeat Simple_repeat 1 43 0 330 308 13 32 chr11 13145887 13146043 -135637429 + L2 LINE L2 2930 3082 -190 189 345 21 49 chr11 13146062 13146204 -135637268 - MIR SINE MIR -8 254 117 185 289 149 61 chr11 13146663 13146891 -135636581 + L2 LINE L2 2927 3174 -98 482 309 92 23 chr11 13147572 13147789 -135635683 + MIR SINE MIR 27 258 -4 939 248 75 16 chr11 13148529 13148851 -135634621 + MER102b DNA MER1_type 1 341 0 1620 152 0 0 chr11 13149100 13149330 -135634142 - AluSx SINE Alu -81 231 2 24 53 0 0 chr11 13150267 13150305 -135633167 + AT_rich Low_complexity Low_complexity 1 38 0 353 279 116 7 chr11 13151313 13151460 -135632012 - MIR SINE MIR -32 230 68 197 152 0 0 chr11 13151625 13151658 -135631814 - MIR SINE MIR -146 62 30 250 178 0 41 chr11 13152558 13152631 -135630841 + CT-rich Low_complexity Low_complexity 4 73 0 516 158 0 0 chr11 13152631 13152713 -135630759 - AluJ/FLAM SINE Alu -230 82 1 874 178 0 0 chr11 13152714 13152849 -135630623 - FRAM SINE Alu -22 154 20 244 320 148 33 chr11 13153536 13153658 -135629814 - L2 LINE L2 -1 3271 3136 272 266 109 47 chr11 13153933 13154061 -135629411 + L2 LINE L2 2387 2522 -792 189 0 0 0 chr11 13154677 13154698 -135628774 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 216 250 160 20 chr11 13154746 13154846 -135628626 - MIR SINE MIR -45 217 104 1811 210 20 13 chr11 13155038 13155429 -135628043 - MSTD LTR MaLR -2 394 1 349 300 66 30 chr11 13156252 13156594 -135626878 + L1ME LINE L1 49 410 -5660 189 132 38 19 chr11 13157106 13157159 -135626313 + (TA)n Simple_repeat Simple_repeat 1 54 0 291 271 79 41 chr11 13157247 13157534 -135625938 - L1MC4 LINE L1 -169 7678 7322 42552 37 2 1 chr11 13157578 13163728 -135619744 + L1PA4 LINE L1 1 6155 0 1358 162 179 23 chr11 13163731 13164077 -135619395 - MSTA LTR MaLR -27 401 2 348 259 38 35 chr11 13164122 13164332 -135619140 - L1MC4 LINE L1 -743 7218 7086 333 339 39 8 chr11 13164333 13164460 -135619012 - MIR SINE MIR -107 155 25 42 36 0 0 chr11 13164470 13164526 -135618946 + AT_rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr11 13165416 13165440 -135618032 + (T)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr11 13165671 13165697 -135617775 + AT_rich Low_complexity Low_complexity 1 26 0 508 306 43 17 chr11 13165934 13166335 -135617137 - L1MC4 LINE L1 -364 5757 5532 703 272 61 29 chr11 13167279 13167525 -135615947 + MIR SINE MIR 2 255 -7 312 316 111 46 chr11 13168169 13168400 -135615072 - MIR SINE MIR -7 255 13 296 357 20 0 chr11 13168718 13168816 -135614656 + MIR SINE MIR 22 121 -87 332 307 57 7 chr11 13168933 13169073 -135614399 + MIR SINE MIR 46 192 -70 263 262 116 113 chr11 13169418 13169649 -135613823 - L2 LINE L2 -18 3254 3020 2041 138 3 25 chr11 13169649 13169967 -135613505 - AluJo SINE Alu -1 311 1 263 262 116 113 chr11 13169967 13170063 -135613409 - L2 LINE L2 -252 3020 2926 955 273 104 75 chr11 13170146 13170495 -135612977 + L2 LINE L2 2214 2551 -762 2172 120 0 0 chr11 13170495 13170787 -135612685 - AluSx SINE Alu -20 292 1 750 125 0 0 chr11 13170793 13170913 -135612559 - L1MA5A LINE L1 -1 6296 6177 955 273 104 75 chr11 13170913 13171622 -135611850 + L2 LINE L2 2555 3287 -26 269 355 57 16 chr11 13171683 13171928 -135611544 - L2 LINE L2 -529 2785 2531 228 111 0 0 chr11 13172302 13172338 -135611134 + (T)n Simple_repeat Simple_repeat 1 36 0 342 0 0 0 chr11 13172528 13172566 -135610906 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 26 0 0 chr11 13172706 13172744 -135610728 + AT_rich Low_complexity Low_complexity 1 38 0 333 22 0 0 chr11 13172747 13172793 -135610679 - HY1 scRNA scRNA -4 108 63 2257 99 0 3 chr11 13172793 13173086 -135610386 + AluSc SINE Alu 1 292 -17 677 238 112 27 chr11 13173199 13173493 -135609979 - MER20B DNA MER1_type -461 322 4 370 296 7 37 chr11 13173644 13173779 -135609693 - MIR SINE MIR -34 228 98 878 280 24 16 chr11 13174650 13174900 -135608572 + MIR SINE MIR 1 252 -10 443 292 78 88 chr11 13174926 13175337 -135608135 + L3 LINE CR1 1168 1574 -3 2314 105 0 0 chr11 13175634 13175938 -135607534 + AluSx SINE Alu 1 304 -8 271 271 37 58 chr11 13177789 13177977 -135605495 + MIR3 SINE MIR 14 197 -11 426 294 0 8 chr11 13179770 13179896 -135603576 + L2 LINE L2 3180 3304 -9 385 289 51 19 chr11 13179931 13180087 -135603385 - MIR SINE MIR -57 205 45 533 121 166 108 chr11 13181158 13181315 -135602157 + MER21A LTR ERV1 14 179 -752 * 756 198 31 25 chr11 13181286 13181448 -135602024 + MER39 LTR ERV1 219 381 -326 1272 177 27 9 chr11 13181695 13181915 -135601557 + MER58A DNA MER1_type 1 224 0 1798 266 77 34 chr11 13182374 13183255 -135600217 - L2 LINE L2 -168 3145 2209 292 226 0 0 chr11 13183365 13183427 -135600045 - L2 LINE L2 -2 3311 3250 25 0 0 0 chr11 13183484 13183509 -135599963 + AT_rich Low_complexity Low_complexity 1 25 0 2177 81 4 4 chr11 13183619 13183892 -135599580 - AluSg SINE Alu -37 273 1 326 305 76 36 chr11 13184134 13184357 -135599115 - L3 LINE CR1 -1 1576 1345 798 194 72 22 chr11 13184372 13184552 -135598920 - MER20 DNA MER1_type -30 189 1 340 311 82 8 chr11 13184645 13184767 -135598705 - MIR SINE MIR -115 147 17 2121 133 0 3 chr11 13184884 13185184 -135598288 - AluSx SINE Alu -13 299 1 250 329 0 0 chr11 13185358 13185443 -135598029 - L3 LINE CR1 -612 965 881 301 321 130 12 chr11 13185658 13185820 -135597652 - L3 LINE CR1 -1066 511 331 367 302 112 39 chr11 13186565 13186896 -135596576 + L1ME4a LINE L1 5760 6114 -7 663 146 92 0 chr11 13189395 13189525 -135593947 + L1MA5A LINE L1 6146 6287 -10 26 30 0 0 chr11 13189569 13189602 -135593870 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr11 13189704 13189732 -135593740 + AT_rich Low_complexity Low_complexity 1 28 0 440 263 85 71 chr11 13189938 13190162 -135593310 + MLT1J LTR MaLR 92 318 -193 387 233 68 30 chr11 13190320 13190453 -135593019 + L1MC5 LINE L1 7771 7908 -53 311 258 103 10 chr11 13190510 13190607 -135592865 + MIR SINE MIR 57 162 -100 879 190 17 35 chr11 13191197 13191371 -135592101 + AluSc SINE Alu 130 300 -9 413 260 62 23 chr11 13192636 13192813 -135590659 - L1ME4a LINE L1 -6 6115 5932 345 241 231 5 chr11 13192798 13193001 -135590471 - L1ME4a LINE L1 -11 6110 5862 * 289 279 122 45 chr11 13193160 13193447 -135590025 - L1ME4a LINE L1 -581 5581 5273 336 272 0 22 chr11 13193488 13193580 -135589892 + MIR SINE MIR 25 114 -148 469 301 84 10 chr11 13194307 13194510 -135588962 + MIR SINE MIR 33 250 -12 189 214 0 36 chr11 13194594 13194650 -135588822 + L2 LINE L2 2309 2362 -952 212 250 83 0 chr11 13194781 13194853 -135588619 + L2 LINE L2 2482 2559 -755 657 270 216 12 chr11 13194906 13195070 -135588402 + L2 LINE L2 2477 2606 -707 243 0 0 0 chr11 13195070 13195097 -135588375 + (CA)n Simple_repeat Simple_repeat 2 28 0 657 270 216 12 chr11 13195097 13195612 -135587860 + L2 LINE L2 2606 3303 -10 453 250 33 41 chr11 13196503 13196708 -135586764 - MIR SINE MIR -48 214 7 272 183 113 0 chr11 13198207 13198278 -135585194 - MER103 DNA DNA -79 87 9 462 263 34 34 chr11 13198425 13198604 -135584868 + MIR SINE MIR 9 187 -75 636 264 51 32 chr11 13198611 13198827 -135584645 - MIR SINE MIR -1 261 42 404 296 7 14 chr11 13199925 13200067 -135583405 - MER91B DNA MER1_type -42 148 8 413 310 76 5 chr11 13201256 13201440 -135582032 + MIR SINE MIR 10 206 -56 630 148 46 0 chr11 13201562 13201670 -135581802 + MER81 DNA DNA 1 113 -1 403 248 101 19 chr11 13201671 13201894 -135581578 - MLT1I LTR MaLR -33 376 93 1896 151 42 0 chr11 13202751 13203036 -135580436 + AluJo SINE Alu 1 297 -15 1772 170 7 10 chr11 13203205 13203494 -135579978 + AluJb SINE Alu 1 288 -24 643 263 26 0 chr11 13205047 13205237 -135578235 + MIR SINE MIR 67 261 -1 301 247 54 0 chr11 13206137 13206230 -135577242 + L1 LINE L1 4733 4830 -1316 26 74 0 0 chr11 13206377 13206431 -135577041 + AT_rich Low_complexity Low_complexity 1 54 0 419 324 96 18 chr11 13206566 13206838 -135576634 - L2 LINE L2 0 3313 3021 1867 256 205 12 chr11 13206887 13208019 -135575453 - L2 LINE L2 -781 2533 1139 455 302 49 24 chr11 13208168 13208373 -135575099 + L1ME LINE L1 5536 5745 -376 218 235 0 0 chr11 13208439 13208490 -135574982 - MIR SINE MIR -58 150 100 1877 129 52 0 chr11 13214909 13215180 -135568292 + AluSx SINE Alu 12 296 -16 271 278 150 32 chr11 13215690 13215877 -135567595 - MLT1L LTR MaLR -6 609 401 234 248 105 38 chr11 13215972 13216077 -135567395 - MLT1J LTR MaLR -302 209 98 349 325 160 37 chr11 13216200 13216581 -135566891 - L3 LINE CR1 -469 1108 681 205 241 17 0 chr11 13216560 13216618 -135566854 - L2 LINE L2 0 3313 3255 * 844 133 167 7 chr11 13216834 13216984 -135566488 + MER45A DNA AcHobo 5 178 0 198 276 17 0 chr11 13217055 13217113 -135566359 - L2 LINE L2 0 3313 3255 366 23 0 0 chr11 13217190 13217233 -135566239 + (TA)n Simple_repeat Simple_repeat 1 43 0 204 281 116 33 chr11 13217670 13217791 -135565681 - L3 LINE CR1 -1269 308 178 222 172 32 151 chr11 13218941 13219034 -135564438 + MER5B DNA MER1_type 2 83 -95 248 187 80 13 chr11 13219089 13219164 -135564308 + L3 LINE CR1 1429 1508 -69 351 0 0 0 chr11 13219345 13219384 -135564088 + (CA)n Simple_repeat Simple_repeat 2 40 0 218 358 58 7 chr11 13220291 13220428 -135563044 - MIR SINE MIR -70 192 49 2166 138 0 13 chr11 13221481 13221793 -135561679 + AluSx SINE Alu 1 308 -4 918 165 82 0 chr11 13221807 13221989 -135561483 + MIR SINE MIR 41 237 -25 207 298 99 28 chr11 13222332 13222473 -135560999 - L2 LINE L2 -220 3052 2902 263 188 101 0 chr11 13222757 13222826 -135560646 - MER5B DNA MER1_type -20 158 83 963 144 51 20 chr11 13222932 13223128 -135560344 - MER33 DNA MER1_type -262 62 1 633 284 255 28 chr11 13224113 13224874 -135558598 + L2 LINE L2 1862 2795 -519 409 300 77 0 chr11 13225117 13225247 -135558225 + L2 LINE L2 3121 3260 -12 302 362 60 39 chr11 13225254 13225903 -135557569 + L2 LINE L2 2315 2977 -337 2016 147 0 3 chr11 13226576 13226876 -135556596 + AluJb SINE Alu 1 299 -13 402 143 0 0 chr11 13227157 13227213 -135556259 - MER3 DNA MER1_type -153 56 1 364 313 26 0 chr11 13227213 13227328 -135556144 - MIR3 SINE MIR -48 160 43 1667 184 3 20 chr11 13227563 13227857 -135555615 - AluJb SINE Alu -23 289 1 317 317 159 48 chr11 13228508 13229069 -135554403 + L2 LINE L2 2334 2956 -358 268 248 229 9 chr11 13229134 13229239 -135554233 + L2 LINE L2 3143 3270 -2 567 309 180 25 chr11 13231181 13232096 -135551376 + L2 LINE L2 2133 3188 -84 950 176 96 5 chr11 13233161 13233348 -135550124 + MER58A DNA MER1_type 20 223 -1 341 261 219 0 chr11 13234561 13234680 -135548792 + MIR SINE MIR 12 156 -106 5478 159 81 49 chr11 13235599 13235852 -135547620 + Charlie1a DNA MER1_type 34 278 -2483 1617 177 7 18 chr11 13235852 13236135 -135547337 + AluJo SINE Alu 1 280 -32 5478 159 81 49 chr11 13236135 13237248 -135546224 + Charlie1a DNA MER1_type 278 1443 -12 1926 135 21 0 chr11 13241719 13242007 -135541465 - AluSx SINE Alu -18 294 1 784 211 28 64 chr11 13242485 13242631 -135540841 - MER58A DNA MER1_type -2198 222 85 2026 117 38 0 chr11 13242631 13242921 -135540551 - AluSx SINE Alu -11 301 1 784 211 28 64 chr11 13242921 13242992 -135540480 - MER58A DNA MER1_type -2335 85 13 18166 28 0 1 chr11 13243324 13246270 -135537202 - L1PA2 LINE L1 -109 6046 3102 1075 234 30 0 chr11 13246498 13246733 -135536739 + MIR SINE MIR 1 242 -20 323 261 34 0 chr11 13247355 13247443 -135536029 + MLT1J1 LTR MaLR 92 182 -264 1985 110 55 14 chr11 13247572 13247862 -135535610 - AluSx SINE Alu -10 302 1 282 200 35 24 chr11 13247871 13247956 -135535516 + MLT1J1 LTR MaLR 353 438 -8 243 218 0 0 chr11 13248266 13248321 -135535151 + (CATATA)n Simple_repeat Simple_repeat 1 55 0 241 188 25 25 chr11 13248334 13248414 -135535058 + (TA)n Simple_repeat Simple_repeat 1 80 0 469 306 66 31 chr11 13248842 13249419 -135534053 + L1M4 LINE L1 4061 4656 -1490 438 231 6 99 chr11 13249540 13249722 -135533750 + L1M3e LINE L1 1 165 -6865 23 0 0 0 chr11 13251130 13251153 -135532319 + AT_rich Low_complexity Low_complexity 1 23 0 26265 92 7 14 chr11 13251360 13255285 -135528187 + L1PA5 LINE L1 11 3907 -2239 6805 64 3 12 chr11 13255285 13256586 -135526886 + L1PA5 LINE L1 4653 5945 -209 4079 80 267 20 chr11 13256586 13257245 -135526227 + LTR12 LTR ERV1 1 822 -4 6805 64 3 12 chr11 13257245 13257451 -135526021 + L1PA5 LINE L1 5945 6151 -3 343 264 23 16 chr11 13257474 13257603 -135525869 + L1M4 LINE L1 5030 5159 -987 5037 89 22 0 chr11 13257981 13258809 -135524663 - pTR5 LTR ERV1 0 2468 1520 1346 134 26 35 chr11 13258895 13259127 -135524345 - MER30 DNA MER1_type 0 230 1 199 323 217 25 chr11 13259253 13259659 -135523813 - L2 LINE L2 -1 3312 2829 289 299 0 0 chr11 13260511 13260588 -135522884 - L1MA10 LINE L1 -68 6266 6190 1865 166 3 10 chr11 13260982 13261283 -135522189 + AluJb SINE Alu 1 299 -13 353 216 173 15 chr11 13261319 13261579 -135521893 + L1M2 LINE L1 5263 5553 -747 259 389 37 9 chr11 13262361 13262469 -135521003 + L2 LINE L2 3110 3220 -52 298 340 10 0 chr11 13262474 13262574 -135520898 + L2 LINE L2 2909 3009 -263 58 0 0 0 chr11 13262649 13262707 -135520765 + AT_rich Low_complexity Low_complexity 1 58 0 557 162 118 7 chr11 13262734 13262870 -135520602 - MER3 DNA MER1_type -58 151 1 504 301 7 22 chr11 13262964 13263100 -135520372 + L2 LINE L2 3180 3313 0 497 144 123 55 chr11 13264114 13264260 -135519212 - MER53 DNA DNA -33 156 1 260 231 0 19 chr11 13264267 13264319 -135519153 - MIR SINE MIR -142 66 16 355 349 72 25 chr11 13264691 13264926 -135518546 - MIR SINE MIR -15 247 2 989 180 19 167 chr11 13266022 13266333 -135517139 + AluJo SINE Alu 1 265 -47 213 39 0 0 chr11 13266336 13266362 -135517110 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1920 149 0 0 chr11 13267158 13267447 -135516025 + AluJb SINE Alu 1 289 -23 1340 142 77 8 chr11 13267540 13267801 -135515671 + L1MA10 LINE L1 6049 6327 -7 1917 167 0 13 chr11 13268479 13268779 -135514693 - AluJo SINE Alu -11 301 6 203 267 83 0 chr11 13269034 13269094 -135514378 + L2 LINE L2 3249 3313 0 4475 120 49 0 chr11 13269346 13270356 -135513116 + L1PA12 LINE L1 4937 5993 -175 1402 204 60 11 chr11 13270490 13270774 -135512698 + AluJo SINE Alu 1 298 -14 1017 329 148 19 chr11 13270882 13271414 -135512058 - L3 LINE CR1 -9 1568 968 335 204 118 112 chr11 13271876 13272028 -135511444 + MIR SINE MIR 109 261 -1 30 27 0 0 chr11 13272042 13272079 -135511393 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr11 13273076 13273104 -135510368 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 13274806 13274828 -135508644 + AT_rich Low_complexity Low_complexity 1 22 0 290 24 48 0 chr11 13275519 13275561 -135507911 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr11 13275737 13275760 -135507712 + AT_rich Low_complexity Low_complexity 1 23 0 899 235 75 112 chr11 13276200 13276974 -135506498 + L1ME LINE L1 305 1049 -5021 929 224 76 32 chr11 13276975 13277319 -135506153 + L1ME1 LINE L1 5808 6166 0 250 258 162 12 chr11 13277914 13278081 -135505391 + L1MC/D LINE L1 5703 5894 -1914 201 167 0 0 chr11 13278111 13278147 -135505325 + A-rich Low_complexity Low_complexity 1 36 0 294 314 98 0 chr11 13278498 13278600 -135504872 + L2 LINE L2 3145 3256 -16 2349 107 0 0 chr11 13278620 13278929 -135504543 + AluSg SINE Alu 1 309 -1 726 200 0 21 chr11 13279419 13279564 -135503908 + FLAM_A SINE Alu 1 142 0 37 23 0 0 chr11 13279564 13279608 -135503864 + AT_rich Low_complexity Low_complexity 1 44 0 220 345 62 9 chr11 13279608 13279721 -135503751 - L2 LINE L2 0 3313 3195 2170 104 3 10 chr11 13279735 13280061 -135503411 - AluSq SINE Alu 0 324 1 234 143 0 0 chr11 13280858 13280893 -135502579 + MER3 DNA MER1_type 24 58 -151 365 310 22 15 chr11 13281068 13281336 -135502136 + L1MC4a LINE L1 4777 5046 -1100 296 173 92 75 chr11 13281465 13281638 -135501834 + L1MC4a LINE L1 5254 5429 -2379 709 253 161 82 chr11 13281642 13281727 -135501745 + L1MC4a LINE L1 5476 5553 -2255 2160 131 0 16 chr11 13281727 13282052 -135501420 + AluJb SINE Alu 1 312 0 709 253 161 82 chr11 13282052 13282610 -135500862 + L1MC4a LINE L1 5553 6170 -1638 824 203 0 0 chr11 13282869 13283002 -135500470 + FLAM_A SINE Alu 1 133 0 243 234 63 9 chr11 13283137 13283248 -135500224 - Charlie7 DNA MER1_type -69 2543 2427 185 277 68 95 chr11 13283352 13283500 -135499972 + MIR3 SINE MIR 38 181 -27 2539 11 0 7 chr11 13283874 13284206 -135499266 - AluYa5 SINE Alu 0 330 1 335 315 76 22 chr11 13286094 13286278 -135497194 + Charlie8 DNA MER1_type 52 245 -2172 298 316 77 47 chr11 13288696 13288930 -135494542 - L2 LINE L2 -86 3186 2946 1355 144 166 15 chr11 13289660 13289986 -135493486 + MSTA LTR MaLR 1 375 -53 2283 92 0 0 chr11 13290293 13290587 -135492885 + AluY SINE Alu 1 294 -17 686 108 100 25 chr11 13291058 13291178 -135492294 + FLAM_C SINE Alu 2 130 -3 2333 86 0 7 chr11 13291314 13291615 -135491857 - AluSx SINE Alu -11 301 3 231 88 0 0 chr11 13291630 13291664 -135491808 + (T)n Simple_repeat Simple_repeat 1 34 0 723 182 34 140 chr11 13291988 13292314 -135491158 - MER65-int LTR ERV1 -1922 2958 2009 21 36 0 0 chr11 13292314 13292342 -135491130 + AT_rich Low_complexity Low_complexity 1 28 0 264 197 0 0 chr11 13292453 13292514 -135490958 - MER65-int LTR ERV1 -2378 2493 2433 791 143 13 164 chr11 13292624 13292855 -135490617 - MER65-int LTR ERV1 -2872 3459 3264 1966 167 3 0 chr11 13292986 13293285 -135490187 + AluJo SINE Alu 13 312 0 754 211 0 0 chr11 13293325 13293458 -135490014 - FLAM_C SINE Alu 0 133 1 1163 160 19 61 chr11 13293471 13293734 -135489738 - MER65-int LTR ERV1 -3116 3215 2964 1201 194 87 85 chr11 13293734 13294240 -135489232 + MER84 LTR ERV1 1 507 0 26784 92 19 21 chr11 13294246 13295552 -135487920 + MER84-int LTR ERV1 11 1318 -3636 7294 50 9 0 chr11 13295552 13296493 -135486979 + L1PA8 LINE L1 5221 6169 -3 26784 92 19 21 chr11 13296493 13299864 -135483608 + MER84-int LTR ERV1 1318 4793 -161 2087 146 24 3 chr11 13299901 13300237 -135483235 - MER61A LTR ERV1 0 343 1 752 189 78 28 chr11 13300242 13300490 -135482982 + L1M4 LINE L1 5222 5480 -704 282 93 0 0 chr11 13300494 13300537 -135482935 + Alu SINE Alu 1 43 -258 4076 18 0 0 chr11 13300637 13301128 -135482344 + L1PA2 LINE L1 5661 6151 -4 2082 135 48 28 chr11 13301153 13301546 -135481926 - MSTA LTR MaLR -27 401 1 3202 203 41 22 chr11 13301546 13302426 -135481046 + L1 LINE L1 3791 4687 -1459 387 0 0 0 chr11 13302434 13302477 -135480995 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 8046 170 26 5 chr11 13302482 13305094 -135478378 - L1PA16 LINE L1 -32 6134 3490 868 224 50 12 chr11 13305093 13305114 -135478358 + L1MC4a LINE L1 4679 4698 -1448 * 3284 21 0 3 chr11 13305114 13305533 -135477939 + L1PA2 LINE L1 5769 6155 0 868 224 50 12 chr11 13305533 13305770 -135477702 + L1MC4a LINE L1 4698 4947 -1199 1352 244 19 27 chr11 13306751 13307120 -135476352 - MLT1F LTR MaLR 0 542 217 4375 173 43 25 chr11 13307148 13308014 -135475458 - L1MB8 LINE L1 0 6178 5282 2003 113 18 0 chr11 13308014 13308324 -135475148 - AluSx SINE Alu 0 316 2 4375 173 43 25 chr11 13308324 13308654 -135474818 - L1MB8 LINE L1 -896 5282 4959 322 288 92 16 chr11 13308660 13308850 -135474622 - MLT1G1 LTR MaLR -393 137 1 222 322 0 23 chr11 13308983 13309070 -135474402 + MIR SINE MIR 149 233 -29 1656 241 89 45 chr11 13309075 13309091 -135474381 + L1MC4a LINE L1 5321 5335 -965 2579 117 5 5 chr11 13309091 13309466 -135474006 + THE1C LTR MaLR 1 375 0 1656 241 89 45 chr11 13309466 13309765 -135473707 + L1MC4a LINE L1 5335 5107 -1193 2317 127 28 19 chr11 13309765 13310126 -135473346 + THE1B LTR MaLR 1 364 0 1656 241 89 45 chr11 13310126 13310492 -135472980 + L1MC4a LINE L1 5106 5454 -846 * 6041 89 3 12 chr11 13310490 13311687 -135471785 + L1PA8A LINE L1 4942 6128 -3 384 284 66 51 chr11 13311763 13312020 -135471452 + L1MC5 LINE L1 7668 7928 -33 331 68 0 0 chr11 13312117 13312161 -135471311 + MLT2D LTR ERVL 371 414 0 2338 74 0 46 chr11 13312244 13312570 -135470902 - AluY SINE Alu 0 311 1 511 298 59 41 chr11 13313572 13313911 -135469561 - L2 LINE L2 -4 3309 2965 621 269 41 101 chr11 13313948 13314264 -135469208 - L2 LINE L2 -454 2860 2564 288 272 179 5 chr11 13314640 13314824 -135468648 - MARNA DNA Mariner -205 381 166 352 289 66 25 chr11 13315027 13315148 -135468324 + L2 LINE L2 3116 3241 -31 1102 234 46 3 chr11 13315454 13315736 -135467736 + LTR16A1 LTR ERVL 160 453 -4 229 214 18 0 chr11 13315938 13315994 -135467478 + MLT1K LTR MaLR 525 581 -7 180 111 0 0 chr11 13316293 13316320 -135467152 + (A)n Simple_repeat Simple_repeat 1 27 0 2145 135 0 7 chr11 13316632 13316929 -135466543 - AluSx SINE Alu -16 296 2 671 361 121 29 chr11 13317468 13317749 -135465723 + L2 LINE L2 2245 2499 -814 759 175 7 36 chr11 13317749 13317886 -135465586 - FLAM_A SINE Alu 0 133 1 671 361 121 29 chr11 13317886 13318577 -135464895 + L2 LINE L2 2499 3313 0 225 279 99 13 chr11 13318732 13318853 -135464619 + MIR SINE MIR 16 152 -61 192 315 0 101 chr11 13318834 13318854 -135464618 + L2 LINE L2 3166 3186 -86 * 1914 154 3 10 chr11 13318854 13319165 -135464307 + AluJo SINE Alu 1 309 -3 192 315 0 101 chr11 13319165 13319233 -135464239 + L2 LINE L2 3186 3245 -27 281 128 13 39 chr11 13319321 13319399 -135464073 + (TA)n Simple_repeat Simple_repeat 2 77 0 528 215 25 0 chr11 13319484 13319605 -135463867 + L1M4 LINE L1 4680 4803 -1343 * 29176 112 17 68 chr11 13319600 13326013 -135457459 - L1PA8 LINE L1 -99 6073 1 237 116 70 0 chr11 13326030 13326073 -135457399 + L1ME LINE L1 5722 5767 -399 1052 70 0 0 chr11 13326119 13326247 -135457225 + AluY SINE Alu 176 303 -8 220 319 106 0 chr11 13326336 13326449 -135457023 - MIR SINE MIR -63 145 21 193 240 29 19 chr11 13327194 13327266 -135456206 - MIR SINE MIR -94 168 97 2656 109 3 8 chr11 13327463 13327840 -135455632 + THE1C LTR MaLR 1 375 0 6758 178 36 91 chr11 13327842 13328263 -135455209 + THE1C-int LTR MaLR 3 445 -1206 2311 107 0 19 chr11 13328263 13328580 -135454892 + AluY SINE Alu 1 311 0 6758 178 36 91 chr11 13328580 13329905 -135453567 + THE1C-int LTR MaLR 445 1651 0 2253 110 84 35 chr11 13329905 13330250 -135453222 + THE1B LTR MaLR 1 362 -2 550 167 10 29 chr11 13330250 13330352 -135453120 + THE1C LTR MaLR 46 145 -230 14663 169 19 8 chr11 13330773 13334555 -135448917 - L1PB2 LINE L1 -3 6205 2381 1305 136 0 5 chr11 13334555 13334739 -135448733 + AluJb SINE Alu 1 183 -129 2244 139 124 2 chr11 13334769 13335255 -135448217 + L1PBa LINE L1 2499 3043 -3819 862 147 0 8 chr11 13335260 13335389 -135448083 - AluSp/q SINE Alu -22 291 164 411 103 0 0 chr11 13335389 13335447 -135448025 - THE1B LTR MaLR -306 58 1 1942 95 62 7 chr11 13335449 13335754 -135447718 + L1PBa LINE L1 2120 2441 -4422 1058 159 0 0 chr11 13335755 13335906 -135447566 - AluSq/x SINE Alu -161 151 1 5963 140 43 24 chr11 13336013 13336319 -135447153 - L1PB2 LINE L1 -4423 1781 1482 2215 149 33 30 chr11 13336319 13336682 -135446790 + THE1B LTR MaLR 1 364 0 12472 103 1 0 chr11 13336682 13338260 -135445212 + THE1B-int LTR MaLR 1 1580 0 2238 138 33 33 chr11 13338262 13338624 -135444848 + THE1B LTR MaLR 3 364 0 5963 140 43 24 chr11 13338624 13340052 -135443420 - L1PB2 LINE L1 -4722 1482 8 * 7977 211 12 7 chr11 13340023 13341652 -135441820 - L1PBa LINE L1 -5223 1640 4 762 262 30 10 chr11 13341991 13342193 -135441279 + MIR SINE MIR 2 207 -55 1823 256 34 15 chr11 13342221 13342749 -135440723 - MER74B LTR ERVL -10 612 75 1536 167 84 14 chr11 13344297 13344572 -135438900 + AluJb SINE Alu 1 294 -18 201 74 0 0 chr11 13344579 13344606 -135438866 + (GGAGAA)n Simple_repeat Simple_repeat 5 31 0 2367 233 41 24 chr11 13344963 13345422 -135438050 + L1M4 LINE L1 4603 5078 -1068 2390 125 48 14 chr11 13345422 13345774 -135437698 - THE1B LTR MaLR 0 364 1 2367 233 41 24 chr11 13345774 13345979 -135437493 + L1M4 LINE L1 5078 5278 -868 43215 38 22 1 chr11 13346001 13352019 -135431453 - L1PA3 LINE L1 0 6155 13 397 173 37 0 chr11 13352018 13352099 -135431373 + L1M LINE L1 5269 5352 -832 * 227 383 39 7 chr11 13352682 13352836 -135430636 + LTR16C LTR ERVL 226 384 -107 3001 112 75 17 chr11 13354130 13354612 -135428860 - MER9 LTR ERVK -1 510 1 1977 68 11 0 chr11 13354867 13355129 -135428343 + L1P2 LINE L1 5493 5726 -428 423 286 30 14 chr11 13355245 13355391 -135428081 - MER5A DNA MER1_type -39 139 4 215 334 24 10 chr11 13355581 13355751 -135427721 + MIR SINE MIR 30 243 -19 324 331 66 18 chr11 13355805 13355971 -135427501 + MIR3 SINE MIR 14 187 -21 2509 84 0 0 chr11 13356970 13357278 -135426194 - AluSc SINE Alu 0 309 2 1796 168 10 3 chr11 13357611 13357914 -135425558 - AluJo SINE Alu -7 305 1 235 174 0 0 chr11 13357916 13357962 -135425510 - L1M4 LINE L1 -3009 3137 3092 258 258 113 13 chr11 13358482 13358633 -135424839 + L1ME4a LINE L1 5952 6117 -4 693 263 134 0 chr11 13358639 13358833 -135424639 - MIR SINE MIR -3 259 40 2006 174 0 0 chr11 13358833 13359138 -135424334 - AluJb SINE Alu -7 305 1 3621 154 73 24 chr11 13360118 13360799 -135422673 + L1MB2 LINE L1 5449 6163 -8 19475 61 3 0 chr11 13360893 13363761 -135419711 + L1PA6 LINE L1 11 2870 -3284 19475 67 4 2 chr11 13363761 13366964 -135416508 + L1PA6 LINE L1 2945 6154 0 19475 61 3 0 chr11 13366964 13367005 -135416467 + L1PA6 LINE L1 2870 6154 0 321 306 92 43 chr11 13367439 13367785 -135415687 - L2 LINE L2 -1201 2113 1751 914 279 93 64 chr11 13367843 13368737 -135414735 - L1MC4a LINE L1 -1635 6173 5254 353 348 40 54 chr11 13369085 13369381 -135414091 - L2 LINE L2 -1898 1416 1125 22219 147 28 4 chr11 13369508 13373026 -135410446 + L1MA3 LINE L1 8 3610 -3955 26877 165 20 20 chr11 13373031 13374731 -135408741 + L1PA10 LINE L1 10 1709 -4774 2836 19 0 3 chr11 13374731 13375044 -135408428 + AluYb8 SINE Alu 1 312 -6 26877 165 20 20 chr11 13375044 13379778 -135403694 + L1PA10 LINE L1 1709 6470 -13 8395 174 48 19 chr11 13380113 13381636 -135401836 + L1MA3 LINE L1 3565 5042 -2682 2046 128 7 7 chr11 13381636 13381940 -135401532 - AluSx SINE Alu -8 304 1 8395 174 48 19 chr11 13381940 13381995 -135401477 + L1MA3 LINE L1 5042 5094 -2630 2308 91 0 14 chr11 13381995 13382292 -135401180 + AluY SINE Alu 1 293 -18 8395 174 48 19 chr11 13382292 13384634 -135398838 + L1MA3 LINE L1 5094 7724 0 757 303 49 67 chr11 13384756 13385311 -135398161 - L2 LINE L2 -2401 913 369 713 252 9 52 chr11 13385701 13385911 -135397561 - MIR SINE MIR -47 215 15 1792 153 0 3 chr11 13386755 13387037 -135396435 + AluJb SINE Alu 5 285 -27 2264 110 7 3 chr11 13388842 13389150 -135394322 + AluSx SINE Alu 1 309 -3 255 79 0 0 chr11 13389515 13389553 -135393919 + (GA)n Simple_repeat Simple_repeat 1 38 0 274 371 81 8 chr11 13389582 13389841 -135393631 - LTR16C LTR ERVL -14 477 200 2407 235 37 14 chr11 13390402 13391134 -135392338 - L1M4 LINE L1 -794 5352 4604 1413 197 95 0 chr11 13391487 13391818 -135391654 - AluSg SINE Alu 0 357 1 271 352 97 22 chr11 13392066 13392333 -135391139 + L2 LINE L2 1859 2145 -1169 1999 149 0 0 chr11 13392591 13392901 -135390571 + AluSx SINE Alu 1 310 0 971 417 44 14 chr11 13393691 13394120 -135389352 + MER74B LTR ERVL 75 516 -106 734 287 31 14 chr11 13394217 13394440 -135389032 - MIR SINE MIR -35 227 1 312 276 301 4 chr11 13395305 13395544 -135387928 + L2 LINE L2 1318 1627 -1687 783 264 9 35 chr11 13395571 13395798 -135387674 + L2 LINE L2 2260 2480 -834 6928 113 20 19 chr11 13395811 13397494 -135385978 - L1MA1 LINE L1 -4 6298 4600 1084 297 145 16 chr11 13397495 13398194 -135385278 + L2 LINE L2 2464 3263 -50 354 121 0 0 chr11 13398782 13398840 -135384632 - MER58A DNA MER1_type -6 218 161 384 224 51 0 chr11 13398842 13398940 -135384532 - MER58A DNA MER1_type -4 103 1 258 282 13 0 chr11 13398957 13399035 -135384437 + MLT1J LTR MaLR 69 147 -364 1926 169 20 0 chr11 13399062 13399364 -135384108 - AluJb SINE Alu -4 308 1 233 216 0 20 chr11 13399368 13399419 -135384053 - MER20 DNA MER1_type 0 219 170 2359 143 46 29 chr11 13399427 13399904 -135383568 - L1MB7 LINE L1 -16 6168 5684 1173 160 10 0 chr11 13399906 13400106 -135383366 - L1MB7 LINE L1 -561 5623 5422 346 285 31 0 chr11 13400104 13400234 -135383238 - L1ME LINE L1 -381 5789 5656 * 992 239 44 10 chr11 13400249 13400577 -135382895 - L1ME LINE L1 -595 5569 5232 750 278 112 42 chr11 13401885 13402460 -135381012 - L1ME LINE L1 -1058 5088 4463 2181 114 0 16 chr11 13402460 13402767 -135380705 - AluSx SINE Alu -10 302 1 750 278 112 42 chr11 13402767 13402828 -135380644 - L1ME LINE L1 -1683 4463 4408 758 273 123 0 chr11 13402911 13403131 -135380341 - MIR SINE MIR -1 261 15 216 0 0 0 chr11 13403139 13403163 -135380309 + (TC)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr11 13403960 13403985 -135379487 + AT_rich Low_complexity Low_complexity 1 25 0 237 300 100 20 chr11 13404412 13404485 -135378987 - L2 LINE L2 0 3272 3187 1303 237 111 8 chr11 13404485 13404844 -135378628 - MSTD LTR MaLR 0 396 1 237 300 100 20 chr11 13404844 13404870 -135378602 - L2 LINE L2 -84 3188 3165 12932 209 11 4 chr11 13405303 13409138 -135374334 - L1PA15 LINE L1 0 6816 2998 575 115 11 0 chr11 13409140 13409227 -135374245 + 5S rRNA rRNA 1 88 -33 4390 231 29 35 chr11 13409228 13410485 -135372987 - L1PA15 LINE L1 -3785 3012 1748 2303 100 3 0 chr11 13410485 13410785 -135372687 + AluSg SINE Alu 1 301 -9 4390 231 29 35 chr11 13410785 13411779 -135371693 - L1PA15 LINE L1 -5049 1748 412 1933 259 29 2 chr11 13411886 13412342 -135371130 - L1PA15 LINE L1 -6319 468 1 21 0 0 0 chr11 13412355 13412376 -135371096 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 13412582 13412607 -135370865 + (TA)n Simple_repeat Simple_repeat 1 25 0 529 326 81 8 chr11 13412719 13412955 -135370517 - MIR SINE MIR -3 259 7 452 255 149 37 chr11 13413328 13413489 -135369983 - MIR SINE MIR -79 183 5 2201 118 0 0 chr11 13413674 13413971 -135369501 - AluSq SINE Alu -16 297 1 582 134 41 0 chr11 13414106 13414203 -135369269 - AluSx SINE Alu -3 309 209 41290 42 2 13 chr11 13414218 13420432 -135363040 - L1PA4 LINE L1 0 6155 14 1374 166 0 22 chr11 13420432 13420661 -135362811 - AluSx SINE Alu -88 224 1 630 285 115 17 chr11 13420938 13421408 -135362064 - L1ME4a LINE L1 -295 5826 5374 1965 152 7 0 chr11 13421533 13421830 -135361642 - AluJb SINE Alu -13 299 1 2780 157 18 33 chr11 13421833 13422405 -135361067 - L1MB5 LINE L1 0 6174 5612 1203 222 30 22 chr11 13422405 13422770 -135360702 - L1MB5 LINE L1 -1403 4743 4376 1354 149 0 0 chr11 13422770 13422964 -135360508 - AluSx SINE Alu -118 194 1 1210 196 38 33 chr11 13422964 13423332 -135360140 - L1MB5 LINE L1 -2461 3685 3316 1407 248 104 11 chr11 13423337 13423797 -135359675 - L2 LINE L2 -1124 2190 1688 181 194 119 45 chr11 13424071 13424138 -135359334 + MER5A DNA MER1_type 40 111 -78 2566 110 72 5 chr11 13424726 13425127 -135358345 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr11 13426155 13426183 -135357289 + AT_rich Low_complexity Low_complexity 1 28 0 496 247 89 0 chr11 13426791 13426949 -135356523 + MER96 DNA MER1_type 1 172 -3 1284 227 45 108 chr11 13427074 13427650 -135355822 + MER34 LTR ERV1 1 540 -2 3718 153 67 33 chr11 13428830 13429747 -135353725 - L1MB8 LINE L1 -17 6161 5202 960 196 0 0 chr11 13429750 13429908 -135353564 - AluJb SINE Alu -13 299 142 5935 206 77 31 chr11 13429913 13431480 -135351992 - L1MB8 LINE L1 -926 5220 3582 929 243 158 25 chr11 13431790 13432239 -135351233 - HAL1b LINE L1 -605 743 235 602 225 8 47 chr11 13432707 13432836 -135350636 - FLAM_A SINE Alu -8 125 2 557 247 100 6 chr11 13432949 13433119 -135350353 - MLT1L LTR MaLR -2 613 428 823 225 25 50 chr11 13433412 13433612 -135349860 + MLT1A1 LTR MaLR 171 365 0 243 52 17 190 chr11 13433702 13433760 -135349712 - MLT2D LTR ERVL 0 414 367 350 167 0 17 chr11 13433770 13433830 -135349642 + MER8 DNA MER2_type 2 60 -179 850 201 25 10 chr11 13433872 13434071 -135349401 + L1MD3 LINE L1 6904 7105 -890 505 229 0 0 chr11 13434081 13434177 -135349295 + MLT1F1 LTR MaLR 35 130 -437 3200 160 10 27 chr11 13434179 13434766 -135348706 + L1MD3 LINE L1 7410 7986 -9 3745 63 7 2 chr11 13435010 13435452 -135348020 - MLT2A1 LTR ERVL 0 444 1 2300 130 133 5 chr11 13435604 13435981 -135347491 - MSTA LTR MaLR -3 425 1 2139 175 66 31 chr11 13436815 13437238 -135346234 - LTR47A LTR ERVL -14 438 1 1040 203 25 98 chr11 13437239 13437651 -135345821 - MER4B-int LTR ERV1 -258 4865 4636 2148 125 26 0 chr11 13437706 13438011 -135345461 - AluSq SINE Alu 0 313 1 1685 104 16 108 chr11 13438011 13438327 -135345145 - MER4B-int LTR ERV1 -1509 5249 4963 2698 198 43 11 chr11 13438350 13438886 -135344586 - MER4B-int LTR ERV1 -1905 4853 4301 880 166 8 17 chr11 13438883 13439067 -135344405 - MER4B-int LTR ERV1 -2483 4275 1182 * 2099 138 10 3 chr11 13439076 13439381 -135344091 - AluSx SINE Alu -1 311 5 411 227 0 0 chr11 13439583 13439711 -135343761 + G-rich Low_complexity Low_complexity 1 128 0 22 0 0 0 chr11 13440421 13440443 -135343029 + GC_rich Low_complexity Low_complexity 1 22 0 737 211 21 0 chr11 13441579 13441721 -135341751 - FRAM SINE Alu -30 146 2 1894 123 9 28 chr11 13441763 13442081 -135341391 - AluSx SINE Alu 0 312 1 1939 159 94 74 chr11 13442672 13442827 -135340645 - MLT1C LTR MaLR 0 467 317 2405 125 125 10 chr11 13442827 13443211 -135340261 + MSTA LTR MaLR 1 428 0 1939 159 94 74 chr11 13443211 13443513 -135339959 - MLT1C LTR MaLR -150 317 1 26 0 0 0 chr11 13444134 13444160 -135339312 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 13444276 13444299 -135339173 + AT_rich Low_complexity Low_complexity 1 23 0 262 308 14 98 chr11 13444542 13444685 -135338787 + MLT1H1 LTR MaLR 9 139 -416 23 0 0 0 chr11 13445195 13445218 -135338254 + AT_rich Low_complexity Low_complexity 1 23 0 2355 88 0 0 chr11 13445260 13445554 -135337918 + AluY SINE Alu 1 294 -17 9345 62 2 14 chr11 13445562 13446742 -135336730 + L1P LINE L1 1 1165 -4981 5982 138 5 26 chr11 13446846 13447021 -135336451 - MER4B-int LTR ERV1 -2728 4030 3853 2443 118 128 8 chr11 13447021 13447403 -135336069 + MSTA LTR MaLR 1 428 0 5982 138 5 26 chr11 13447403 13448197 -135335275 - MER4B-int LTR ERV1 -2905 3853 3081 226 278 0 44 chr11 13448207 13448297 -135335175 - L1MC4 LINE L1 -1342 6700 6615 471 213 21 7 chr11 13448301 13448442 -135335030 + (TATATG)n Simple_repeat Simple_repeat 4 146 0 22 35 0 0 chr11 13448475 13448504 -135334968 + AT_rich Low_complexity Low_complexity 1 29 0 837 185 0 60 chr11 13448514 13448740 -135334732 - AluJb SINE Alu -31 281 2 303 93 0 0 chr11 13448780 13448823 -135334649 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1392 183 11 49 chr11 13448823 13449108 -135334364 - AluJo SINE Alu -38 274 1 1471 205 45 45 chr11 13449120 13449663 -135333809 - LTR49-int LTR ERV1 -1950 2936 2559 37036 97 12 12 chr11 13449722 13455873 -135327599 + L1PA6 LINE L1 11 6154 0 2072 225 96 78 chr11 13455935 13456001 -135327471 - LTR49-int LTR ERV1 -2594 2286 2223 2199 129 76 15 chr11 13456001 13456342 -135327130 - THE1B LTR MaLR 0 364 3 2072 225 96 78 chr11 13456342 13456962 -135326510 - LTR49-int LTR ERV1 -2657 2223 1616 2690 145 41 5 chr11 13456962 13457375 -135326097 + MSTA LTR MaLR 1 428 0 9798 157 40 22 chr11 13457375 13458997 -135324475 + MSTA-int LTR MaLR 1 1651 0 2553 124 70 5 chr11 13458997 13459399 -135324073 + MSTA LTR MaLR 1 428 0 2072 225 96 78 chr11 13459399 13459548 -135323924 - LTR49-int LTR ERV1 -3263 1617 751 1713 163 37 59 chr11 13459923 13460298 -135323174 - LTR47A LTR ERVL -2 450 84 1968 127 0 43 chr11 13460298 13460597 -135322875 - AluSx SINE Alu -6 306 21 205 183 33 67 chr11 13460678 13460738 -135322734 + L2 LINE L2 3210 3267 -5 207 332 106 68 chr11 13461100 13461365 -135322107 + L2 LINE L2 2825 3099 -173 2145 143 0 0 chr11 13461404 13461712 -135321760 - AluSx SINE Alu -4 308 1 1005 170 0 23 chr11 13461769 13461940 -135321532 - FRAM SINE Alu -12 164 1 445 67 22 67 chr11 13461942 13462031 -135321441 - Charlie5 DNA MER1_type -56 2556 2472 2306 98 0 3 chr11 13463482 13463778 -135319694 + AluSg SINE Alu 1 295 -15 2124 110 0 10 chr11 13463785 13464077 -135319395 + AluY SINE Alu 1 289 -22 522 288 27 27 chr11 13464163 13464347 -135319125 + MIR SINE MIR 8 191 -71 196 250 130 60 chr11 13465840 13465940 -135317532 + L2 LINE L2 3153 3259 -13 359 251 56 4 chr11 13466250 13466396 -135317076 - L1ME3 LINE L1 0 6164 6005 195 42 0 0 chr11 13467195 13467219 -135316253 + (CGG)n Simple_repeat Simple_repeat 3 26 0 25 65 0 0 chr11 13467371 13467417 -135316055 + GC_rich Low_complexity Low_complexity 1 46 0 737 211 21 0 chr11 13468555 13468697 -135314775 - FRAM SINE Alu -30 146 2 1916 125 6 28 chr11 13468739 13469058 -135314414 - AluSx SINE Alu 0 312 1 193 333 32 32 chr11 13469615 13469741 -135313731 - L2 LINE L2 -189 3083 2958 579 208 213 11 chr11 13470073 13470256 -135313216 - MIR SINE MIR 0 262 43 315 282 13 0 chr11 13470247 13470325 -135313147 - L2 LINE L2 -6 3266 3188 * 1298 178 45 25 chr11 13470786 13471028 -135312444 + AluJb SINE Alu 52 298 -14 534 254 84 33 chr11 13471770 13471983 -135311489 - MIR SINE MIR -16 246 23 30 45 0 0 chr11 13472370 13472414 -135311058 + AT_rich Low_complexity Low_complexity 1 44 0 2443 71 7 3 chr11 13472497 13472805 -135310667 + AluSg SINE Alu 1 309 -1 579 254 0 16 chr11 13472813 13472935 -135310537 + MIR SINE MIR 30 149 -59 403 226 78 10 chr11 13473419 13473521 -135309951 - L1MC5 LINE L1 -97 7864 7756 266 283 123 38 chr11 13475359 13475465 -135308007 - MIR3 SINE MIR -6 202 88 2289 71 3 0 chr11 13476736 13477019 -135306453 - AluY SINE Alu -16 295 12 21 0 0 0 chr11 13477565 13477586 -135305886 + AT_rich Low_complexity Low_complexity 1 21 0 566 270 0 0 chr11 13478733 13478859 -135304613 - FLAM_A SINE Alu -16 126 1 2439 135 54 47 chr11 13478888 13479317 -135304155 - MSTB1 LTR MaLR 0 432 1 304 71 24 0 chr11 13479520 13479562 -135303910 - MER61C LTR ERV1 0 434 392 1011 223 57 32 chr11 13479822 13480143 -135303329 + MLT1G LTR MaLR 1 284 -306 590 233 0 16 chr11 13480184 13480313 -135303159 + MLT1G LTR MaLR 429 555 0 22 0 0 0 chr11 13480358 13480380 -135303092 + AT_rich Low_complexity Low_complexity 1 22 0 930 215 72 0 chr11 13480827 13481036 -135302436 + MER58A DNA MER1_type 1 224 0 1709 199 0 10 chr11 13481067 13481379 -135302093 - AluJb SINE Alu -3 309 1 2224 117 0 0 chr11 13481578 13481877 -135301595 + AluSx SINE Alu 1 299 -13 772 132 7 37 chr11 13482010 13482146 -135301326 - FLAM_C SINE Alu 0 133 2 282 284 68 80 chr11 13482924 13483086 -135300386 - MIR SINE MIR -75 187 28 290 254 0 0 chr11 13484389 13484452 -135299020 - MIR3 SINE MIR -8 200 138 663 135 39 0 chr11 13485021 13485125 -135298347 - HY1 scRNA scRNA -3 109 2 278 256 81 23 chr11 13485425 13485511 -135297961 - MIR SINE MIR -122 140 50 3095 19 11 0 chr11 13486211 13486576 -135296896 + L1PA4 LINE L1 5784 6152 -3 325 109 0 0 chr11 13487069 13487115 -135296357 + L2 LINE L2 3264 3309 -4 624 152 9 9 chr11 13487288 13487400 -135296072 - FLAM_A SINE Alu -4 138 27 496 204 124 26 chr11 13487495 13487608 -135295864 + MER94 DNA DNA 5 128 -6 2034 224 145 37 chr11 13487638 13488340 -135295132 - L1ME3A LINE L1 -9 6161 5536 2371 79 0 3 chr11 13488340 13488643 -135294829 - AluSx SINE Alu -10 302 1 2034 224 145 37 chr11 13488643 13489393 -135294079 - L1ME3A LINE L1 -634 5536 4431 232 81 27 0 chr11 13489435 13489472 -135294000 - L1MB5 LINE L1 -8 6166 6129 1187 180 41 132 chr11 13489474 13489868 -135293604 - MLT1A1 LTR MaLR -7 358 1 3099 184 42 17 chr11 13489868 13490290 -135293182 - L1MB5 LINE L1 -40 6134 5689 1212 160 48 35 chr11 13490290 13490354 -135293118 + MER46A DNA MER2_type 2 64 -2667 2020 125 10 0 chr11 13490354 13490643 -135292829 + AluSx SINE Alu 3 294 -18 1212 160 48 35 chr11 13490643 13490809 -135292663 + MER46A DNA MER2_type 64 235 -1 3099 184 42 17 chr11 13490809 13491029 -135292443 - L1MB5 LINE L1 -485 5689 5476 226 250 38 0 chr11 13491353 13491433 -135292039 - HAL1 LINE L1 -1600 907 825 1288 80 146 0 chr11 13491562 13491761 -135291711 + MER30 DNA MER1_type 3 230 0 293 212 129 24 chr11 13492912 13492997 -135290475 - MIR3 SINE MIR -26 182 89 216 265 59 73 chr11 13493729 13493865 -135289607 - MIR SINE MIR 0 262 129 25 31 0 0 chr11 13494377 13494409 -135289063 + AT_rich Low_complexity Low_complexity 1 32 0 892 186 149 0 chr11 13495374 13495562 -135287910 - MER20 DNA MER1_type 0 219 4 1954 139 3 7 chr11 13495634 13495936 -135287536 + AluSx SINE Alu 1 301 -11 361 330 31 21 chr11 13496451 13496642 -135286830 + L2 LINE L2 2177 2369 -945 292 252 96 52 chr11 13496685 13496800 -135286672 - L2 LINE L2 0 3313 3194 338 299 75 95 chr11 13496939 13497008 -135286464 + L2 LINE L2 2685 2754 -560 2363 65 3 3 chr11 13497008 13497302 -135286170 + AluY SINE Alu 3 296 -15 338 299 75 95 chr11 13497302 13497526 -135285946 + L2 LINE L2 2754 2972 -342 25 51 0 0 chr11 13497796 13497835 -135285637 + AT_rich Low_complexity Low_complexity 1 39 0 438 258 53 23 chr11 13498478 13498610 -135284862 + MIR SINE MIR 37 172 -90 26 0 0 0 chr11 13499433 13499459 -135284013 + AT_rich Low_complexity Low_complexity 1 26 0 942 165 18 0 chr11 13499716 13499880 -135283592 + L1MA5A LINE L1 6128 6294 -3 358 123 192 27 chr11 13499917 13499990 -135283482 + AluJb SINE Alu 43 127 -175 26 30 0 0 chr11 13499990 13500023 -135283449 + AT_rich Low_complexity Low_complexity 1 33 0 389 343 21 14 chr11 13500305 13500448 -135283024 + MIR SINE MIR 8 151 -111 21 0 0 0 chr11 13500830 13500851 -135282621 + AT_rich Low_complexity Low_complexity 1 21 0 1294 151 0 9 chr11 13501629 13501841 -135281631 - AluJb SINE Alu -3 309 100 2155 122 0 0 chr11 13502219 13502522 -135280950 + AluSq SINE Alu 1 303 -10 278 340 36 62 chr11 13502888 13503082 -135280390 - MER5A DNA MER1_type 0 189 1 208 200 0 83 chr11 13503085 13503145 -135280327 - MER5A DNA MER1_type -26 163 109 324 349 66 20 chr11 13503270 13503422 -135280050 - MER5A DNA MER1_type -22 167 9 234 210 16 16 chr11 13504651 13504713 -135278759 - L1MC/D LINE L1 -516 5817 5756 975 133 99 5 chr11 13504959 13505170 -135278302 - L1MA8 LINE L1 -3 6288 6058 503 250 125 45 chr11 13505237 13505461 -135278011 - MIR SINE MIR -5 257 16 342 269 65 43 chr11 13505540 13505726 -135277746 - L1MC/D LINE L1 -1993 5815 5626 23 54 0 0 chr11 13506104 13506141 -135277331 + AT_rich Low_complexity Low_complexity 1 37 0 1689 112 27 12 chr11 13506581 13506840 -135276632 + AluSg SINE Alu 43 305 -5 285 29 0 0 chr11 13506902 13506936 -135276536 + (CA)n Simple_repeat Simple_repeat 1 34 0 205 286 39 26 chr11 13508358 13508435 -135275037 - MIR3 SINE MIR -14 194 117 777 248 142 23 chr11 13508677 13508979 -135274493 - MER46C DNA MER2_type 0 338 1 687 290 82 48 chr11 13514771 13515205 -135268267 - MLT1G LTR MaLR -13 542 82 1442 63 0 5 chr11 13515261 13515452 -135268020 - L1PA5 LINE L1 -16 6138 5949 266 229 0 0 chr11 13515475 13515523 -135267949 - MLT1G LTR MaLR -547 48 1 1107 230 4 13 chr11 13516096 13516322 -135267150 - MER58A DNA MER1_type 0 224 1 786 226 133 99 chr11 13517095 13517646 -135265826 - MLT1G LTR MaLR -10 580 7 836 229 51 0 chr11 13518125 13518300 -135265172 + MER20 DNA MER1_type 36 219 0 2363 91 3 10 chr11 13520920 13521229 -135262243 - AluSx SINE Alu -4 308 2 236 77 26 0 chr11 13521312 13521351 -135262121 + (TA)n Simple_repeat Simple_repeat 1 40 0 698 286 152 21 chr11 13521448 13521539 -135261933 - L1MEd LINE L1 -4711 1599 1521 1624 173 16 19 chr11 13521539 13521851 -135261621 + AluJo SINE Alu 2 312 0 698 286 152 21 chr11 13521851 13522616 -135260856 - L1MEd LINE L1 -4789 1521 592 1951 128 7 13 chr11 13522720 13523024 -135260448 + AluJb SINE Alu 1 302 -10 733 200 35 25 chr11 13523111 13523311 -135260161 - MER33 DNA MER1_type -97 227 26 654 126 0 10 chr11 13523323 13523426 -135260046 + MSTA LTR MaLR 327 428 0 1270 206 60 31 chr11 13523427 13523868 -135259604 - L1ME3A LINE L1 -164 6006 5415 555 313 83 19 chr11 13523866 13524131 -135259341 + L1ME4a LINE L1 5262 5543 -2265 * 436 243 51 86 chr11 13524133 13524517 -135258955 - L1MEc LINE L1 -3845 2581 2234 265 56 0 0 chr11 13524583 13524619 -135258853 + MADE1 DNA Mariner 1 36 -44 541 326 38 23 chr11 13524702 13525049 -135258423 - L1MEc LINE L1 -4584 2023 1672 339 306 45 57 chr11 13525107 13525264 -135258208 - L1MEc LINE L1 -5058 1368 1214 344 305 76 0 chr11 13526374 13526492 -135256980 - MIR3 SINE MIR -67 141 15 25 51 0 0 chr11 13528835 13528874 -135254598 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr11 13530578 13530623 -135252849 + AT_rich Low_complexity Low_complexity 1 45 0 316 176 162 0 chr11 13531247 13531315 -135252157 + MER116 DNA Mariner 1 79 -1 244 200 67 17 chr11 13531342 13531402 -135252070 + MARNA DNA Mariner 44 106 -480 618 269 211 0 chr11 13531571 13531779 -135251693 - MIR SINE MIR -10 252 1 266 140 80 0 chr11 13531872 13531922 -135251550 - L2 LINE L2 0 3272 3219 4052 93 37 2 chr11 13532399 13532934 -135250538 - MER41A LTR ERV1 0 554 1 1135 151 32 32 chr11 13533109 13533295 -135250177 + MER5A DNA MER1_type 4 189 0 2242 113 3 0 chr11 13533401 13533703 -135249769 + AluSg SINE Alu 2 304 -6 233 225 38 38 chr11 13533703 13533783 -135249689 + L1ME4a LINE L1 5953 6032 -89 199 200 0 0 chr11 13534549 13534584 -135248888 + L2 LINE L2 3264 3298 -15 28 29 0 0 chr11 13536010 13536045 -135247427 + AT_rich Low_complexity Low_complexity 1 35 0 1965 154 10 0 chr11 13536432 13536782 -135246690 - AluSx SINE Alu 0 353 1 191 236 181 42 chr11 13536784 13536856 -135246616 - MER5A DNA MER1_type -72 117 36 31 0 0 0 chr11 13537270 13537301 -135246171 + AT_rich Low_complexity Low_complexity 1 31 0 874 167 83 44 chr11 13537301 13537505 -135245967 + AluJo SINE Alu 84 295 -17 604 217 183 6 chr11 13537560 13537740 -135245732 + MIR SINE MIR 36 247 -15 2175 108 3 7 chr11 13538705 13539000 -135244472 - AluSq SINE Alu -18 295 2 1020 240 78 6 chr11 13539307 13539732 -135243740 + LTR33 LTR ERVL 19 505 -16 2323 82 10 0 chr11 13540138 13540430 -135243042 - AluSx SINE Alu -17 295 1 362 358 98 12 chr11 13540431 13540677 -135242795 + L2 LINE L2 2454 2720 -594 25 75 0 0 chr11 13541019 13541072 -135242400 + AT_rich Low_complexity Low_complexity 1 53 0 362 299 57 67 chr11 13541153 13541347 -135242125 + MER117 DNA MER1_type 1 192 -5 326 315 63 0 chr11 13541448 13541591 -135241881 - L1MEc LINE L1 -2254 3961 3810 * 1552 253 83 98 chr11 13541587 13542714 -135240758 - L1MEc LINE L1 -4355 2041 934 1518 190 48 24 chr11 13542714 13543003 -135240469 + AluJo SINE Alu 1 296 -16 1552 253 83 98 chr11 13543003 13543147 -135240325 - L1MEc LINE L1 -5462 934 789 273 136 0 0 chr11 13543149 13543193 -135240279 - AluJ/FLAM SINE Alu -218 84 41 347 333 31 16 chr11 13543398 13543590 -135239882 - L1MEc LINE L1 -5951 445 251 647 317 117 27 chr11 13544253 13544663 -135238809 - LTR16A LTR ERVL -3 447 1 631 326 164 20 chr11 13545800 13547140 -135236332 + L2 LINE L2 1521 3056 -216 776 263 9 9 chr11 13547680 13547893 -135235579 + L1PB1 LINE L1 4 216 -6647 * 15631 179 19 21 chr11 13547870 13548796 -135234676 + L1PB1 LINE L1 1392 2319 -4548 2221 115 30 0 chr11 13548796 13549092 -135234380 - AluSg SINE Alu -5 305 1 15631 179 19 21 chr11 13549092 13550435 -135233037 + L1PB1 LINE L1 2319 3664 -3203 2144 108 0 19 chr11 13550435 13550742 -135232730 + AluY SINE Alu 1 301 -10 15631 179 19 21 chr11 13550742 13553897 -135229575 + L1PB1 LINE L1 3664 6866 -1 543 78 0 0 chr11 13554129 13554206 -135229266 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 2093 136 0 22 chr11 13554750 13555067 -135228405 + AluSg SINE Alu 1 310 0 1601 149 156 53 chr11 13556989 13557439 -135226033 - LTR54B LTR ERV1 -2 496 1 194 224 0 103 chr11 13557824 13557882 -135225590 - MIR SINE MIR -88 174 123 185 280 0 0 chr11 13557980 13558030 -135225442 - MIR SINE MIR -17 245 196 1276 184 56 23 chr11 13558096 13558401 -135225071 - MER33 DNA MER1_type -9 315 1 492 336 24 64 chr11 13559486 13559781 -135223691 - MLT1K LTR MaLR -3 585 303 24 32 0 0 chr11 13560099 13560130 -135223342 + AT_rich Low_complexity Low_complexity 1 31 0 233 329 0 0 chr11 13560213 13560295 -135223177 - L3 LINE CR1 -1071 506 425 702 195 39 95 chr11 13560325 13560556 -135222916 + LTR33 LTR ERVL 4 221 -300 558 254 34 23 chr11 13560614 13560791 -135222681 + LTR33 LTR ERVL 334 512 -9 416 330 91 17 chr11 13560796 13561026 -135222446 - L3 LINE CR1 -1188 389 143 665 301 23 30 chr11 13561076 13561338 -135222134 - MLT1I LTR MaLR -4 405 146 281 140 120 0 chr11 13561810 13561860 -135221612 + L2 LINE L2 3258 3313 0 262 266 55 55 chr11 13562911 13563020 -135220452 - MIR SINE MIR -104 158 50 582 333 72 7 chr11 13563141 13563432 -135220040 + L2 LINE L2 2366 2675 -639 328 333 78 0 chr11 13564042 13564171 -135219301 + L2 LINE L2 3134 3272 0 191 272 12 0 chr11 13564176 13564257 -135219215 + (TA)n Simple_repeat Simple_repeat 2 83 0 2956 103 67 30 chr11 13564303 13564769 -135218703 - MER31A LTR ERV1 -2 483 1 1998 162 0 0 chr11 13565057 13565354 -135218118 + AluSx SINE Alu 1 297 -15 1774 130 6 101 chr11 13565484 13565822 -135217650 - AluJb SINE Alu -6 306 1 3220 158 112 37 chr11 13566555 13567231 -135216241 - LTR8A LTR ERV1 0 727 1 674 221 79 83 chr11 13567431 13567685 -135215787 + MLT1K LTR MaLR 334 586 -2 464 222 140 97 chr11 13568252 13568531 -135214941 - MER102a DNA MER1_type -4 326 36 767 258 74 68 chr11 13568823 13569296 -135214176 + MLT1K LTR MaLR 1 476 0 2245 103 17 0 chr11 13569929 13570229 -135213243 - AluSx SINE Alu -7 305 1 719 312 36 8 chr11 13571664 13571917 -135211555 - MIR SINE MIR 0 262 3 244 193 0 0 chr11 13572135 13572192 -135211280 - Charlie7 DNA MER1_type -2447 165 109 218 31 0 31 chr11 13572192 13572224 -135211248 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5769 146 48 6 chr11 13572377 13572959 -135210513 + L1PA16 LINE L1 4675 5231 -935 236 53 26 0 chr11 13572959 13572997 -135210475 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5769 146 48 6 chr11 13572997 13573846 -135209626 + L1PA16 LINE L1 5231 6163 -3 2451 136 62 14 chr11 13574072 13574507 -135208965 - MLT1C LTR MaLR 0 467 12 1180 203 5 5 chr11 13574597 13574814 -135208658 - MER20 DNA MER1_type 0 219 3 2198 179 126 49 chr11 13575205 13575795 -135207677 - L1MA10 LINE L1 -1 6333 5553 2336 75 3 28 chr11 13575795 13576141 -135207331 + LTR7 LTR ERV1 90 410 -40 184 0 0 88 chr11 13576146 13576180 -135207292 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1496 158 28 47 chr11 13576182 13576630 -135206842 - L1M4 LINE L1 -634 5550 5100 742 229 126 22 chr11 13576805 13577036 -135206436 + MIR SINE MIR 4 258 -4 186 245 0 0 chr11 13577051 13577100 -135206372 + L2 LINE L2 3222 3270 -2 2267 105 3 0 chr11 13577697 13577993 -135205479 - AluSp SINE Alu -14 299 3 1645 164 3 11 chr11 13578583 13578791 -135204681 + L1MB3 LINE L1 5579 5786 -397 1970 176 46 0 chr11 13578791 13579120 -135204352 + MER2 DNA MER2_type 1 344 0 1645 164 3 11 chr11 13579120 13579198 -135204274 + L1MB3 LINE L1 5786 5863 -320 787 165 86 13 chr11 13579895 13580102 -135203370 + MER106B DNA MER1_type 1 1058 -1 27 49 0 0 chr11 13580496 13580537 -135202935 + AT_rich Low_complexity Low_complexity 1 41 0 452 240 82 53 chr11 13580626 13580759 -135202713 - MIR SINE MIR -67 195 54 1336 189 120 63 chr11 13580759 13581125 -135202347 - MLT1B LTR MaLR -2 388 2 452 240 82 53 chr11 13581125 13581162 -135202310 - MIR SINE MIR -208 54 20 502 339 32 29 chr11 13581350 13581774 -135201698 + L2 LINE L2 2560 3059 -213 1616 164 22 50 chr11 13581848 13582008 -135201464 - MLT1A1 LTR MaLR -49 316 168 1993 122 3 10 chr11 13582008 13582304 -135201168 - AluSx SINE Alu -18 294 1 1616 164 22 50 chr11 13582304 13582461 -135201011 - MLT1A1 LTR MaLR -197 168 8 315 326 22 14 chr11 13583693 13583831 -135199641 - L1ME LINE L1 -391 5730 5592 1801 158 11 3 chr11 13583954 13584239 -135199233 + AluJo SINE Alu 1 287 -25 542 232 7 21 chr11 13584613 13584755 -135198717 - MARNA DNA Mariner -124 462 323 1354 244 176 19 chr11 13584844 13585429 -135198043 - LTR50 LTR ERVL -116 679 3 310 303 101 0 chr11 13585433 13585552 -135197920 - MIR SINE MIR -28 234 104 2288 138 24 27 chr11 13585694 13586070 -135197402 + THE1C LTR MaLR 1 375 0 418 315 36 0 chr11 13586386 13586497 -135196975 - MIR SINE MIR -112 150 36 361 283 173 16 chr11 13586562 13586751 -135196721 - MIR SINE MIR -27 235 17 406 195 195 6 chr11 13586751 13586904 -135196568 - MER5A DNA MER1_type 0 189 4 547 199 42 2 chr11 13588117 13588252 -135195220 - L1ME2 LINE L1 -308 5856 5730 628 269 16 33 chr11 13588253 13588435 -135195037 + MLT1H LTR MaLR 134 312 -237 465 212 26 35 chr11 13588425 13588538 -135194934 + MLT1H LTR MaLR 438 549 0 * 192 40 0 0 chr11 13589200 13589225 -135194247 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 178 14 14 chr11 13589329 13589402 -135194070 + (TA)n Simple_repeat Simple_repeat 1 73 0 1338 243 11 0 chr11 13589480 13589747 -135193725 - MER115 DNA AcHobo -6 687 418 1621 198 14 3 chr11 13589788 13590071 -135193401 + MLT1A1 LTR MaLR 80 365 0 828 321 31 42 chr11 13590103 13590390 -135193082 - MER115 DNA AcHobo -338 355 72 336 275 160 42 chr11 13590438 13591158 -135192314 - L1M4 LINE L1 -2334 3812 3008 495 186 58 0 chr11 13591636 13591722 -135191750 - LTR50 LTR ERVL -696 99 9 306 295 116 50 chr11 13591901 13592142 -135191330 + L1ME3A LINE L1 680 936 -5269 205 26 26 51 chr11 13592182 13592221 -135191251 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 38127 36 26 3 chr11 13592221 13597656 -135185816 - L1PA3 LINE L1 -13 6142 578 718 76 0 0 chr11 13597623 13597715 -135185757 - L1PA3 LINE L1 -6048 98 7 * 225 216 189 0 chr11 13597762 13597836 -135185636 + L1ME3A LINE L1 1027 1114 -5091 2352 141 141 65 chr11 13597951 13598300 -135185172 - MLT2B1 LTR ERVL -10 510 114 6810 45 5 22 chr11 13598300 13599105 -135184367 + L1PA5 LINE L1 5361 6151 -3 2352 141 141 65 chr11 13599105 13599229 -135184243 - MLT2B1 LTR ERVL -406 114 1 779 275 112 30 chr11 13599243 13599574 -135183898 + L1ME3A LINE L1 1261 1648 -4748 2273 159 34 0 chr11 13599574 13599926 -135183546 - THE1B LTR MaLR 0 364 1 779 275 112 30 chr11 13599926 13600096 -135183376 + L1ME3A LINE L1 1648 1803 -4593 23 0 0 0 chr11 13600115 13600138 -135183334 + AT_rich Low_complexity Low_complexity 1 23 0 475 290 201 10 chr11 13600340 13600654 -135182818 + L1ME3A LINE L1 2150 2523 -3873 3914 245 98 53 chr11 13600688 13600822 -135182650 + L1ME3A LINE L1 3062 3189 -3042 1862 131 16 32 chr11 13600822 13601135 -135182337 + AluJb SINE Alu 5 312 0 3914 245 98 53 chr11 13601135 13601829 -135181643 + L1ME3A LINE L1 3189 3850 -2381 2226 170 11 22 chr11 13601829 13602194 -135181278 + MLT1A1 LTR MaLR 4 364 -1 3914 245 98 53 chr11 13602194 13602949 -135180523 + L1ME3A LINE L1 3850 4570 -1661 585 112 22 0 chr11 13602949 13603038 -135180434 - L1PA15 LINE L1 -7 6158 6068 3914 245 98 53 chr11 13603038 13603632 -135179840 + L1ME3A LINE L1 4570 5355 -876 330 26 0 0 chr11 13603632 13603671 -135179801 + (TG)n Simple_repeat Simple_repeat 2 40 0 3914 245 98 53 chr11 13603671 13603782 -135179690 + L1ME3A LINE L1 5355 5460 -771 1007 110 41 0 chr11 13603782 13603927 -135179545 + LTR29 LTR ERV1 395 545 -77 422 172 0 0 chr11 13604029 13604093 -135179379 - FLAM SINE Alu -27 116 53 4791 148 42 54 chr11 13604222 13605071 -135178401 + L1MB2 LINE L1 5006 5822 -349 1467 179 13 60 chr11 13605071 13605372 -135178100 + AluJo SINE Alu 11 297 -15 4791 148 42 54 chr11 13605372 13605718 -135177754 + L1MB2 LINE L1 5822 6171 0 1563 247 76 39 chr11 13605737 13606001 -135177471 + L1ME3A LINE L1 5447 5700 -539 1640 217 133 7 chr11 13606001 13606416 -135177056 - MLT1C LTR MaLR 0 467 1 1563 247 76 39 chr11 13606416 13606690 -135176782 + L1ME3A LINE L1 5700 6005 -234 440 303 32 32 chr11 13606769 13606957 -135176515 + L1ME3A LINE L1 6031 6218 -21 242 364 21 50 chr11 13607923 13608063 -135175409 + L2 LINE L2 3137 3272 0 695 266 142 20 chr11 13608228 13608653 -135174819 - L2 LINE L2 -172 3141 2667 849 230 6 0 chr11 13608666 13608844 -135174628 + MER69 DNA AcHobo 525 703 -1823 3687 196 94 26 chr11 13608870 13609714 -135173758 + MER69 DNA AcHobo 1456 2380 -146 1727 166 10 36 chr11 13609714 13610022 -135173450 - AluJo SINE Alu -12 300 1 3687 196 94 26 chr11 13610022 13610175 -135173297 + MER69 DNA AcHobo 2380 2521 -5 374 185 7 141 chr11 13610204 13610258 -135173214 - L2 LINE L2 -1004 2310 2250 2808 91 14 0 chr11 13610258 13610608 -135172864 - THE1A LTR MaLR 0 355 1 12329 97 8 1 chr11 13610608 13612174 -135171298 - THE1A-int LTR MaLR 0 1580 3 2848 75 11 0 chr11 13612178 13612527 -135170945 - THE1A LTR MaLR -2 353 1 374 185 7 141 chr11 13612527 13612601 -135170871 - L2 LINE L2 -1066 2248 2194 445 162 0 14 chr11 13612601 13612675 -135170797 + ORSL DNA AcHobo 1 73 -202 1138 216 52 22 chr11 13612677 13612908 -135170564 + Tigger5 DNA MER2_type 1 238 -2085 * 1219 111 0 0 chr11 13612898 13613069 -135170403 + Tigger5 DNA MER2_type 2085 2255 -68 407 275 50 25 chr11 13613074 13613194 -135170278 - L2 LINE L2 0 3313 3191 228 171 24 0 chr11 13613221 13613262 -135170210 + Tigger5 DNA MER2_type 14 55 -2268 440 141 115 0 chr11 13613272 13613350 -135170122 + Tigger5 DNA MER2_type 2237 2323 0 255 61 0 0 chr11 13613351 13613384 -135170088 + (CA)n Simple_repeat Simple_repeat 2 34 0 679 173 0 0 chr11 13613444 13613548 -135169924 + ORSL DNA AcHobo 169 272 -3 479 274 28 0 chr11 13613548 13613654 -135169818 - L2 LINE L2 -1113 2201 2093 1373 223 177 157 chr11 13613940 13614636 -135168836 - L2 LINE L2 -1223 2091 1173 402 215 48 108 chr11 13614636 13614823 -135168649 + MER69A DNA AcHobo 1 177 0 1373 223 177 157 chr11 13614823 13615242 -135168230 - L2 LINE L2 -2141 1173 764 1321 172 40 73 chr11 13615243 13615485 -135167987 + MER89 LTR ERV1 1 249 -310 2315 111 0 0 chr11 13615485 13615791 -135167681 + AluSg SINE Alu 1 306 -4 1321 172 40 73 chr11 13615791 13615971 -135167501 + MER89 LTR ERV1 249 506 -53 1982 289 34 40 chr11 13615986 13616717 -135166755 - L2 LINE L2 -2548 766 40 225 250 107 0 chr11 13616952 13617008 -135166464 + L2 LINE L2 3207 3268 -4 810 214 26 34 chr11 13617428 13617662 -135165810 - MER93b LTR ERV1 -2 371 140 324 275 198 18 chr11 13617910 13618077 -135165395 - L3 LINE CR1 -27 1550 1354 33132 37 1 0 chr11 13618393 13623148 -135160324 - L1PA4 LINE L1 -3 6152 1393 247 326 155 2 chr11 13623852 13624008 -135159464 + MIR SINE MIR 6 186 -76 566 248 50 134 chr11 13624025 13624384 -135159088 - L2 LINE L2 -2 3311 2983 632 229 392 10 chr11 13624498 13624804 -135158668 - L2 LINE L2 -668 2646 2224 1752 230 100 26 chr11 13625336 13625828 -135157644 - MLT1F1 LTR MaLR -2 565 38 24 0 0 0 chr11 13625914 13625938 -135157534 + AT_rich Low_complexity Low_complexity 1 24 0 219 36 0 0 chr11 13625943 13625971 -135157501 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2392 15 0 0 chr11 13625974 13626243 -135157229 - L1HS LINE L1 -2 6153 5885 * 3663 10 0 0 chr11 13626239 13626638 -135156834 + L1HS LINE L1 5495 5893 -262 890 222 6 0 chr11 13626901 13627072 -135156400 + MER74A LTR ERVL 1 172 -386 1796 184 35 27 chr11 13627284 13627659 -135155813 + MER74A LTR ERVL 177 554 -4 9158 64 3 2 chr11 13628334 13629404 -135154068 - MER11C LTR ERVK 0 1071 1 794 254 113 71 chr11 13630025 13630539 -135152933 - MLT1H LTR MaLR -4 545 12 1453 211 68 9 chr11 13630629 13630965 -135152507 + MLT1A1 LTR MaLR 10 365 0 3262 112 0 23 chr11 13631732 13632206 -135151266 - L1PA13 LINE L1 -5 6158 5696 213 269 135 31 chr11 13632211 13632370 -135151102 - MIR SINE MIR -82 180 1 413 89 0 0 chr11 13634619 13634675 -135148797 + MLT2D LTR ERVL 1 56 -358 313 218 81 0 chr11 13634674 13634761 -135148711 + MLT2D LTR ERVL 317 410 -4 * 400 243 69 28 chr11 13635324 13635468 -135148004 + MIR SINE MIR 77 226 -36 359 314 57 28 chr11 13635565 13635766 -135147706 + MIR SINE MIR 36 240 -22 203 305 0 17 chr11 13636060 13636119 -135147353 + GA-rich Low_complexity Low_complexity 2 59 0 1829 200 108 36 chr11 13637115 13637586 -135145886 - MLT1D LTR MaLR 0 505 1 2099 128 0 7 chr11 13637661 13637959 -135145513 + AluSx SINE Alu 1 296 -16 309 294 116 0 chr11 13639398 13639544 -135143928 + MIR SINE MIR 93 255 -7 241 318 0 0 chr11 13641280 13641343 -135142129 + MLT1J1 LTR MaLR 331 393 -53 370 256 168 48 chr11 13642919 13643191 -135140281 - L1MC4a LINE L1 -188 5933 5620 1413 229 35 50 chr11 13643528 13643926 -135139546 + MLT1I LTR MaLR 18 409 0 2724 23 3 0 chr11 13644667 13644969 -135138503 + AluY SINE Alu 1 303 -8 291 296 102 23 chr11 13645212 13645350 -135138122 - MER112 DNA MER1_type -4 256 130 1595 169 0 25 chr11 13645350 13645634 -135137838 - AluJb SINE Alu 0 312 36 291 296 102 23 chr11 13645634 13645668 -135137804 - MER112 DNA MER1_type -130 130 100 243 0 0 0 chr11 13645668 13645695 -135137777 + (TG)n Simple_repeat Simple_repeat 2 28 0 291 296 102 23 chr11 13645695 13645737 -135137735 - MER112 DNA MER1_type -160 100 24 275 131 16 33 chr11 13647112 13647173 -135136299 - L1MC1 LINE L1 0 6333 6274 1305 114 0 0 chr11 13647264 13647439 -135136033 - AluSg/x SINE Alu 0 310 136 180 0 0 0 chr11 13648498 13648518 -135134954 + (TTA)n Simple_repeat Simple_repeat 2 21 0 211 292 42 10 chr11 13648532 13648628 -135134844 - MIR SINE MIR -132 130 32 188 284 59 49 chr11 13649595 13649697 -135133775 + L2 LINE L2 1164 1266 -2048 340 246 32 32 chr11 13650005 13650131 -135133341 - MIR SINE MIR -12 250 125 554 278 68 45 chr11 13650382 13650648 -135132824 - MLT1K LTR MaLR 0 588 317 711 203 0 7 chr11 13650984 13651127 -135132345 + L1MB7 LINE L1 5981 6122 -62 971 203 0 11 chr11 13651661 13651848 -135131624 + L1MB8 LINE L1 5983 6167 -11 723 208 0 0 chr11 13652029 13652159 -135131313 + FLAM_C SINE Alu 3 132 -11 1481 184 31 27 chr11 13652177 13652471 -135131001 + AluJo SINE Alu 6 300 -12 259 254 17 0 chr11 13652488 13652547 -135130925 + L2 LINE L2 3223 3282 -31 1014 224 72 99 chr11 13652547 13653069 -135130403 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 13653753 13654101 -135129371 + MLT1A1 LTR MaLR 19 365 0 472 184 122 10 chr11 13654688 13654786 -135128686 - MER81 DNA DNA -1 113 5 303 235 24 12 chr11 13654879 13654964 -135128508 + MIR SINE MIR 128 213 -49 238 348 0 11 chr11 13655505 13655597 -135127875 + MER5A DNA MER1_type 95 185 -4 191 345 53 18 chr11 13655595 13655708 -135127764 + L2 LINE L2 3144 3260 -12 * 257 295 152 9 chr11 13656966 13657071 -135126401 + L2 LINE L2 3151 3270 -2 280 232 49 49 chr11 13657094 13657176 -135126296 - MIR SINE MIR -118 144 63 2469 119 86 0 chr11 13657833 13658227 -135125245 - MSTA LTR MaLR 0 428 1 547 224 22 30 chr11 13658283 13658417 -135125055 - MER117 DNA MER1_type -61 136 4 2243 12 0 0 chr11 13660926 13661178 -135122294 - L1P1 LINE L1 -594 5561 5310 1365 53 29 0 chr11 13661178 13661344 -135122128 + L1PA3 LINE L1 5980 6155 0 603 247 28 22 chr11 13661355 13661533 -135121939 - Charlie8 DNA MER1_type -2141 276 98 2039 137 7 13 chr11 13661728 13662035 -135121437 - AluJo SINE Alu -7 305 1 431 242 85 20 chr11 13662476 13662629 -135120843 - HsTC2 DNA Tc2 -1009 889 727 24 32 0 0 chr11 13662728 13662759 -135120713 + AT_rich Low_complexity Low_complexity 1 31 0 239 316 84 0 chr11 13663178 13663273 -135120199 - MIR SINE MIR -79 183 81 864 194 10 36 chr11 13663506 13663702 -135119770 - L1PB4 LINE L1 -1 6155 5965 2061 155 3 18 chr11 13663754 13664096 -135119376 + MER1B DNA MER1_type 1 337 0 566 256 109 14 chr11 13664546 13664757 -135118715 - L1M4 LINE L1 -2448 3698 3468 21 26 0 26 chr11 13664757 13664776 -135118696 + AT_rich Low_complexity Low_complexity 1 19 -19 12525 27 0 0 chr11 13664776 13666989 -135116483 - L1PA3 LINE L1 0 6155 3943 21 26 0 26 chr11 13666989 13667008 -135116464 + AT_rich Low_complexity Low_complexity 19 38 0 1211 253 35 59 chr11 13667012 13667503 -135115969 + L1M4 LINE L1 3689 4167 -1979 1111 234 31 0 chr11 13667505 13667795 -135115677 + L1MC3 LINE L1 7324 7622 -163 953 169 0 0 chr11 13667924 13668105 -135115367 - FRAM SINE Alu 0 185 5 253 210 16 16 chr11 13668576 13668638 -135114834 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 13669083 13669105 -135114367 + AT_rich Low_complexity Low_complexity 1 22 0 2530 127 6 3 chr11 13669294 13669657 -135113815 - THE1B LTR MaLR 0 364 1 858 302 109 9 chr11 13669720 13670271 -135113201 - L2 LINE L2 -2 3311 2707 395 350 14 32 chr11 13670743 13670963 -135112509 + L2 LINE L2 2065 2280 -1034 1785 174 3 7 chr11 13670963 13671262 -135112210 - AluSx SINE Alu -10 302 5 190 266 62 62 chr11 13671298 13671411 -135112061 + L2 LINE L2 3200 3312 -1 684 275 153 14 chr11 13671418 13671862 -135111610 + L2 LINE L2 553 1058 -2256 195 284 53 32 chr11 13671876 13671971 -135111501 - L2 LINE L2 -42 3230 3134 261 83 0 0 chr11 13673148 13673184 -135110288 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 360 0 0 0 chr11 13673183 13673223 -135110249 + (GA)n Simple_repeat Simple_repeat 1 40 0 1615 178 16 33 chr11 13673461 13673827 -135109645 - L1MA4 LINE L1 -5 6295 5936 638 170 9 0 chr11 13673841 13673953 -135109519 - FLAM_A SINE Alu -11 131 19 413 317 6 49 chr11 13674349 13674513 -135108959 - MER117 DNA MER1_type 0 197 41 544 293 19 56 chr11 13676085 13676300 -135107172 + MIR SINE MIR 56 262 0 219 293 13 13 chr11 13676397 13676472 -135107000 + CT-rich Low_complexity Low_complexity 4 78 0 1891 102 55 0 chr11 13676686 13676975 -135106497 + AluSg SINE Alu 15 317 0 475 268 118 18 chr11 13677189 13677409 -135106063 - MIR SINE MIR 0 262 21 282 291 34 8 chr11 13677889 13678006 -135105466 + MIR SINE MIR 134 253 -9 200 143 24 24 chr11 13678023 13678065 -135105407 + GA-rich Low_complexity Low_complexity 2 43 0 187 306 139 29 chr11 13680274 13680447 -135103025 - L2 LINE L2 -863 2451 2260 694 289 43 30 chr11 13681109 13681344 -135102128 + MIR SINE MIR 18 255 -7 231 175 12 125 chr11 13682909 13682989 -135100483 + MIR SINE MIR 69 139 -69 394 264 9 0 chr11 13683102 13683208 -135100264 + MER94 DNA DNA 4 110 -24 341 189 54 0 chr11 13683407 13683481 -135099991 - MER53 DNA DNA -2 187 110 266 115 77 39 chr11 13683696 13683748 -135099724 - L1MB7 LINE L1 0 6184 6131 227 394 37 11 chr11 13683975 13684163 -135099309 - L2 LINE L2 -236 3036 2844 201 333 40 30 chr11 13684181 13684280 -135099192 - L2 LINE L2 -855 2459 2360 347 276 10 0 chr11 13684811 13684909 -135098563 - L1ME4a LINE L1 -66 6055 5957 1129 207 5 0 chr11 13685066 13685274 -135098198 - MER3 DNA MER1_type 0 209 1 1325 254 112 74 chr11 13685379 13685991 -135097481 - L1ME3A LINE L1 -13 6157 5569 1956 133 177 11 chr11 13685991 13686173 -135097299 + MSTA LTR MaLR 1 151 -277 189 0 0 0 chr11 13686173 13686194 -135097278 + (TC)n Simple_repeat Simple_repeat 1 21 0 1956 133 177 11 chr11 13686194 13686378 -135097094 + MSTA LTR MaLR 151 428 0 1325 254 112 74 chr11 13686378 13687055 -135096417 - L1ME3A LINE L1 -601 5569 4805 983 207 103 0 chr11 13687055 13687258 -135096214 + MER58A DNA MER1_type 1 224 0 1325 254 112 74 chr11 13687258 13687428 -135096044 - L1ME3A LINE L1 -1365 4805 4643 22 35 0 0 chr11 13687433 13687462 -135096010 + AT_rich Low_complexity Low_complexity 1 29 0 411 255 21 28 chr11 13687468 13687609 -135095863 - L1ME4a LINE L1 -218 5903 5764 347 301 45 0 chr11 13687670 13687803 -135095669 + L1ME LINE L1 5598 5736 -385 240 125 0 25 chr11 13687935 13687975 -135095497 - tRNA-Gly-GGA tRNA tRNA -36 39 1 392 292 10 0 chr11 13688997 13689093 -135094379 + MER5B DNA MER1_type 50 146 -32 550 316 71 15 chr11 13689403 13689599 -135093873 - MIR SINE MIR -30 232 26 280 270 0 0 chr11 13689648 13689711 -135093761 + MIR SINE MIR 197 259 -3 1518 181 26 0 chr11 13691721 13691991 -135091481 - L1MD3 LINE L1 0 7995 7719 854 136 0 0 chr11 13692010 13692128 -135091344 + FLAM_C SINE Alu 1 118 -15 12266 42 2 9 chr11 13692156 13694355 -135089117 - L1PA5 LINE L1 -5 6149 3960 384 181 0 0 chr11 13695515 13695598 -135087874 + (TG)n Simple_repeat Simple_repeat 2 84 0 498 323 20 92 chr11 13695704 13696007 -135087465 - L2 LINE L2 -27 3245 2965 323 233 108 34 chr11 13696015 13696191 -135087281 + LTR33 LTR ERVL 27 215 -306 1081 300 44 50 chr11 13696293 13696857 -135086615 + MER115 DNA AcHobo 133 693 0 314 194 58 48 chr11 13696926 13697029 -135086443 + LTR33 LTR ERVL 415 518 -3 209 69 0 0 chr11 13697035 13697064 -135086408 - L2 LINE L2 -305 2967 2939 261 57 0 0 chr11 13698905 13698940 -135084532 + (GA)n Simple_repeat Simple_repeat 1 35 0 264 271 56 56 chr11 13699237 13699381 -135084091 + HAL1 LINE L1 1464 1607 -900 972 270 124 45 chr11 13699521 13700266 -135083206 - L2 LINE L2 -2 3311 2517 251 307 64 14 chr11 13700278 13700418 -135083054 + HAL1b LINE L1 1187 1333 -15 798 300 108 13 chr11 13700684 13701072 -135082400 - LTR16A LTR ERVL 0 450 1 608 284 130 5 chr11 13701109 13701317 -135082155 + MIR SINE MIR 27 260 -2 2078 129 14 0 chr11 13701373 13701660 -135081812 - AluJo SINE Alu -21 291 1 2732 121 25 39 chr11 13705263 13705701 -135077771 - MSTB1 LTR MaLR 0 432 1 1112 193 10 5 chr11 13705702 13705909 -135077563 - MIR SINE MIR -5 257 50 476 294 69 36 chr11 13706234 13706652 -135076820 + L1ME4a LINE L1 2670 3101 -3045 694 101 0 0 chr11 13706707 13706796 -135076676 - 5S rRNA rRNA -31 90 2 281 325 25 25 chr11 13707185 13707342 -135076130 + MLT1J LTR MaLR 347 503 -8 355 305 51 25 chr11 13707954 13708072 -135075400 - LTR33A LTR ERVL -345 178 58 399 297 42 18 chr11 13708289 13708454 -135075018 - LTR33 LTR ERVL -22 499 331 1529 210 82 2 chr11 13708454 13708897 -135074575 + MLT1F LTR MaLR 1 465 -77 1829 289 75 13 chr11 13708965 13709580 -135073892 - MLT2F LTR ERVL -10 653 1 957 307 52 40 chr11 13709613 13710280 -135073192 + L1ME4a LINE L1 3739 4414 -1732 1630 226 9 0 chr11 13710282 13710623 -135072849 - L1MC4 LINE L1 -467 7575 7232 629 305 93 28 chr11 13710641 13711038 -135072434 + L1ME4a LINE L1 5491 5913 -208 21 82 0 0 chr11 13711157 13711206 -135072266 + AT_rich Low_complexity Low_complexity 1 49 0 2819 106 48 14 chr11 13711651 13712065 -135071407 + MSTA LTR MaLR 1 428 0 282 289 178 22 chr11 13712086 13712221 -135071251 + MIR3 SINE MIR 46 201 -7 224 238 32 16 chr11 13712981 13713044 -135070428 - MIR SINE MIR -128 134 71 442 236 0 0 chr11 13713145 13713234 -135070238 - L2 LINE L2 0 3272 3184 2813 84 6 0 chr11 13713368 13713726 -135069746 - L1PB1 LINE L1 0 6151 5792 642 132 0 0 chr11 13713832 13713923 -135069549 + FRAM SINE Alu 74 164 -12 279 254 17 0 chr11 13713940 13713999 -135069473 + L2 LINE L2 3223 3282 -31 1007 224 72 99 chr11 13713999 13714521 -135068951 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 13715205 13715553 -135067919 + MLT1A1 LTR MaLR 19 365 0 510 184 122 10 chr11 13716140 13716238 -135067234 - MER81 DNA DNA -1 113 5 326 235 24 12 chr11 13716331 13716416 -135067056 + MIR SINE MIR 128 213 -49 261 348 0 11 chr11 13716957 13717049 -135066423 + MER5A DNA MER1_type 95 185 -4 224 345 53 18 chr11 13717047 13717160 -135066312 + L2 LINE L2 3144 3260 -12 * 291 295 152 9 chr11 13718418 13718523 -135064949 + L2 LINE L2 3151 3270 -2 307 232 49 49 chr11 13718546 13718628 -135064844 - MIR SINE MIR -118 144 63 2611 119 86 0 chr11 13719285 13719679 -135063793 - MSTA LTR MaLR 0 428 1 549 224 22 30 chr11 13719735 13719869 -135063603 - MER117 DNA MER1_type -61 136 4 12570 25 0 0 chr11 13722378 13723997 -135059475 - L1P1 LINE L1 -594 5561 3943 1244 253 35 59 chr11 13724020 13724511 -135058961 + L1M4 LINE L1 3689 4167 -1979 1135 234 31 0 chr11 13724513 13724803 -135058669 + L1MC3 LINE L1 7324 7622 -163 941 169 0 0 chr11 13724932 13725113 -135058359 - FRAM SINE Alu 0 185 5 257 210 16 16 chr11 13725584 13725646 -135057826 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 13726091 13726113 -135057359 + AT_rich Low_complexity Low_complexity 1 22 0 2668 127 6 3 chr11 13726302 13726665 -135056807 - THE1B LTR MaLR 0 364 1 990 300 109 9 chr11 13726728 13727279 -135056193 - L2 LINE L2 -2 3311 2707 184 368 103 23 chr11 13727397 13727707 -135055765 + L2 LINE L2 183 517 -2797 448 350 14 32 chr11 13727751 13727971 -135055501 + L2 LINE L2 2065 2280 -1034 1774 174 3 7 chr11 13727971 13728270 -135055202 - AluSx SINE Alu -10 302 5 223 266 62 62 chr11 13728306 13728419 -135055053 + L2 LINE L2 3200 3312 -1 243 88 0 0 chr11 13728520 13728554 -135054918 + (TA)n Simple_repeat Simple_repeat 2 35 0 5544 166 7 5 chr11 13728554 13730125 -135053347 - L1P5 LINE L1 -371 5780 4204 442 198 73 0 chr11 13730133 13730229 -135053243 - L1 LINE L1 -2060 4086 3984 443 185 11 22 chr11 13730231 13730323 -135053149 - L2 LINE L2 -967 2347 2257 639 328 189 20 chr11 13730418 13731028 -135052444 - L2 LINE L2 -370 2944 2232 188 67 33 0 chr11 13731064 13731094 -135052378 + (TG)n Simple_repeat Simple_repeat 1 31 0 2043 161 24 59 chr11 13731246 13731945 -135051527 - MER4A LTR ERV1 0 689 1 283 345 59 77 chr11 13733052 13733495 -135049977 - L2 LINE L2 -3 3269 2835 420 306 15 0 chr11 13733863 13733997 -135049475 - MIR SINE MIR -121 141 6 227 31 31 0 chr11 13734530 13734562 -135048910 + (TC)n Simple_repeat Simple_repeat 2 34 0 333 0 0 0 chr11 13735323 13735360 -135048112 + (CA)n Simple_repeat Simple_repeat 1 37 0 2378 200 114 82 chr11 13737046 13737815 -135045657 - MER21B LTR ERV1 -69 794 1 1546 218 19 3 chr11 13738154 13738471 -135045001 + MER110 LTR ERV1 10 331 -160 340 333 63 35 chr11 13738623 13738797 -135044675 + L2 LINE L2 2902 3080 -192 369 309 68 65 chr11 13739804 13740128 -135043344 - L2 LINE L2 -49 3264 2940 1057 98 0 0 chr11 13740304 13740437 -135043035 - AluSq/x SINE Alu -179 133 1 600 269 32 13 chr11 13740583 13740739 -135042733 + MIR SINE MIR 2 160 -102 3070 180 12 23 chr11 13741757 13742318 -135041154 - L1MB8 LINE L1 -5 6173 5619 185 370 0 22 chr11 13742479 13742571 -135040901 - L2 LINE L2 -32 3240 3151 676 217 123 18 chr11 13742575 13742792 -135040680 - MIR SINE MIR -3 259 19 725 277 64 12 chr11 13742796 13743045 -135040427 + MIR SINE MIR 1 262 0 222 156 0 0 chr11 13743139 13743184 -135040288 + A-rich Low_complexity Low_complexity 1 45 0 187 347 13 40 chr11 13744088 13744163 -135039309 + L2 LINE L2 3112 3184 -88 354 296 80 8 chr11 13744263 13744388 -135039084 - MIR SINE MIR -72 190 57 1750 154 37 3 chr11 13744609 13744907 -135038565 + AluJb SINE Alu 1 308 -4 486 283 97 18 chr11 13745910 13746109 -135037363 + MIR SINE MIR 20 230 -32 1739 94 34 0 chr11 13746214 13746449 -135037023 - AluSp SINE Alu -70 243 1 24 0 0 0 chr11 13746636 13746660 -135036812 + AT_rich Low_complexity Low_complexity 1 24 0 2292 94 0 0 chr11 13746661 13746949 -135036523 - AluSx SINE Alu -24 288 1 621 152 0 45 chr11 13747373 13747485 -135035987 - FRAM SINE Alu -1 175 69 1171 239 81 0 chr11 13747597 13747907 -135035565 - L1ME1 LINE L1 -25 6141 5807 711 283 25 10 chr11 13747956 13748154 -135035318 + MIR SINE MIR 59 259 -3 21 0 0 0 chr11 13748154 13748175 -135035297 + AT_rich Low_complexity Low_complexity 1 21 0 539 252 0 0 chr11 13748734 13748849 -135034623 - MIR SINE MIR -118 144 30 964 196 50 10 chr11 13748850 13749049 -135034423 + MER3 DNA MER1_type 3 209 0 250 303 106 38 chr11 13749927 13750059 -135033413 - MIR SINE MIR -15 247 107 190 299 45 30 chr11 13750049 13750116 -135033356 - MIR3 SINE MIR -126 82 15 * 193 262 24 0 chr11 13750933 13750975 -135032497 - L2 LINE L2 -21 3251 3209 4316 248 80 27 chr11 13751273 13752962 -135030510 + L1ME3A LINE L1 3700 5557 -610 180 0 0 0 chr11 13752962 13752982 -135030490 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4316 248 80 27 chr11 13752982 13753626 -135029846 + L1ME3A LINE L1 5557 6165 -2 477 343 28 58 chr11 13753992 13754356 -135029116 - L2 LINE L2 -9 3263 2911 215 269 0 0 chr11 13754490 13754542 -135028930 + MIR SINE MIR 54 105 -157 2458 101 33 19 chr11 13754619 13754987 -135028485 + L1MA1 LINE L1 5930 6302 0 2704 16 0 7 chr11 13754996 13755302 -135028170 + AluY SINE Alu 1 304 -7 943 277 43 0 chr11 13756251 13756486 -135026986 - MIR SINE MIR 0 262 18 180 111 0 0 chr11 13756734 13756761 -135026711 + (T)n Simple_repeat Simple_repeat 1 27 0 225 298 18 0 chr11 13757441 13757498 -135025974 - L2 LINE L2 -16 3256 3199 245 330 110 0 chr11 13757866 13757975 -135025497 - L2 LINE L2 -2 3270 3150 1321 237 61 53 chr11 13757980 13758452 -135025020 + MLT2B3 LTR ERVL 1 547 -7 313 294 98 28 chr11 13759081 13759224 -135024248 - L2 LINE L2 -20 3293 3141 30 45 0 0 chr11 13759260 13759304 -135024168 + AT_rich Low_complexity Low_complexity 1 44 0 411 208 26 0 chr11 13759605 13759682 -135023790 + FRAM/FAM SINE Alu 11 89 -87 277 358 0 11 chr11 13759756 13759851 -135023621 - L2 LINE L2 -207 3065 2972 505 279 132 5 chr11 13760647 13760844 -135022628 - MIR SINE MIR 0 262 41 501 268 52 20 chr11 13760841 13760994 -135022478 - MIR SINE MIR -79 183 26 * 189 0 0 0 chr11 13761258 13761279 -135022193 + (T)n Simple_repeat Simple_repeat 1 21 0 1245 194 8 28 chr11 13766069 13766317 -135017155 + L1MC4 LINE L1 7454 7696 -346 1500 166 26 26 chr11 13766318 13766620 -135016852 + MER33 DNA MER1_type 1 302 -22 1279 172 52 85 chr11 13766652 13767018 -135016454 + L1MC4 LINE L1 7687 8040 -2 301 294 134 0 chr11 13767298 13767417 -135016055 + HAL1 LINE L1 1219 1353 -1154 36 0 0 0 chr11 13767428 13767464 -135016008 + AT_rich Low_complexity Low_complexity 1 36 0 2208 111 0 0 chr11 13767464 13767752 -135015720 - AluSx SINE Alu -24 288 1 282 310 123 15 chr11 13767876 13768079 -135015393 + HAL1 LINE L1 1450 1674 -833 345 308 78 75 chr11 13768716 13768773 -135014699 + L1 LINE L1 2740 2795 -3351 2671 136 44 7 chr11 13768773 13769184 -135014288 + MSTB LTR MaLR 1 426 0 345 308 78 75 chr11 13769184 13769564 -135013908 + L1 LINE L1 2795 3178 -2968 319 193 23 0 chr11 13770126 13770214 -135013258 + CT-rich Low_complexity Low_complexity 2 91 0 259 286 79 57 chr11 13770214 13770354 -135013118 + MIR SINE MIR 44 186 -76 241 344 26 7 chr11 13770435 13770586 -135012886 + L1 LINE L1 3788 3941 -2205 2451 42 0 3 chr11 13770586 13770870 -135012602 + AluY SINE Alu 14 296 -15 884 158 11 84 chr11 13771061 13771251 -135012221 - AluJb SINE Alu -2 310 135 225 244 59 50 chr11 13771344 13771463 -135012009 + L1 LINE L1 4326 4445 -1701 567 241 107 18 chr11 13772030 13772462 -135011010 - LTR33 LTR ERVL -2 519 25 257 269 51 0 chr11 13772554 13772632 -135010840 - HAL1 LINE L1 -2422 85 4 1805 188 152 5 chr11 13773003 13773418 -135010054 + MLT2B1 LTR ERVL 1 486 -34 442 31 15 15 chr11 13773418 13773483 -135009989 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1805 188 152 5 chr11 13773483 13773509 -135009963 + MLT2B1 LTR ERVL 486 507 -13 389 326 78 8 chr11 13773820 13774065 -135009407 + L2 LINE L2 2427 2688 -626 272 263 40 10 chr11 13774174 13774273 -135009199 - L2 LINE L2 0 3313 3212 404 325 60 40 chr11 13774290 13774588 -135008884 + L1ME LINE L1 5360 5663 -458 2248 118 3 0 chr11 13774642 13774938 -135008534 - AluSx SINE Alu -15 297 1 337 319 72 14 chr11 13775947 13776085 -135007387 + MIR3 SINE MIR 18 163 -45 1034 206 143 20 chr11 13776471 13776723 -135006749 + Charlie1a DNA MER1_type 1 283 -1172 1498 138 0 40 chr11 13776731 13776978 -135006494 + L1PA8 LINE L1 7 243 -6218 4204 142 34 91 chr11 13776978 13778012 -135005460 + pTR5 LTR ERV1 745 2131 -475 183 42 0 0 chr11 13778012 13778036 -135005436 + (G)n Simple_repeat Simple_repeat 1 24 0 4204 142 34 91 chr11 13778036 13778487 -135004985 + pTR5 LTR ERV1 2131 2606 0 30945 112 9 27 chr11 13778487 13784704 -134998768 + L1PA8 LINE L1 253 6460 -27 5840 161 35 44 chr11 13784704 13785931 -134997541 + Charlie1a DNA MER1_type 240 1455 0 189 379 53 0 chr11 13786348 13786443 -134997029 - L2 LINE L2 -56 3216 3117 365 306 9 18 chr11 13787527 13787638 -134995834 + L2 LINE L2 3136 3245 -27 1591 128 68 68 chr11 13787762 13788058 -134995414 - AluJo SINE Alu -16 296 1 2303 106 0 0 chr11 13788331 13788633 -134994839 + AluSx SINE Alu 1 302 -10 695 255 109 21 chr11 13790048 13790287 -134993185 - MIR SINE MIR 0 262 3 272 296 26 17 chr11 13790921 13791036 -134992436 + T-rich Low_complexity Low_complexity 3 118 0 811 98 0 0 chr11 13791074 13791176 -134992296 + AluSx SINE Alu 1 102 -211 1508 103 25 0 chr11 13791231 13791434 -134992038 + AluSx SINE Alu 99 306 -4 646 297 91 13 chr11 13792219 13792451 -134991021 + MIR SINE MIR 13 262 0 213 271 43 29 chr11 13792794 13792864 -134990608 - MIR SINE MIR -171 91 21 418 319 122 18 chr11 13793534 13793763 -134989709 + MIR SINE MIR 8 260 -2 255 289 83 107 chr11 13795007 13795370 -134988102 - L2 LINE L2 -9 3263 2910 823 169 8 0 chr11 13795412 13795542 -134987930 + Tigger4(Zombi) DNA MER2_type 1 131 -2600 2052 118 6 72 chr11 13795545 13795908 -134987564 + Tigger4(Zombi) DNA MER2_type 2393 2731 0 250 314 109 19 chr11 13795908 13796064 -134987408 - L2 LINE L2 -466 2848 2679 186 218 36 55 chr11 13796617 13796672 -134986800 - L2 LINE L2 -18 3254 3201 377 268 0 10 chr11 13796706 13796803 -134986669 - MER46C DNA MER2_type 0 338 243 1946 115 50 4 chr11 13796860 13797138 -134986334 + AluSx SINE Alu 1 291 -21 259 229 0 71 chr11 13798334 13798404 -134985068 + L2 LINE L2 3238 3302 -11 323 324 56 7 chr11 13799147 13799289 -134984183 - L2 LINE L2 -2 3311 3163 629 239 38 19 chr11 13799531 13799690 -134983782 - MIR SINE MIR -13 249 88 760 190 57 0 chr11 13799774 13799932 -134983540 - L1MD2 LINE L1 -10 6349 6183 1675 178 10 13 chr11 13801658 13801961 -134981511 - AluJo SINE Alu -6 306 5 295 305 137 15 chr11 13802854 13802985 -134980487 + L2 LINE L2 3085 3231 -41 261 347 0 0 chr11 13803047 13803145 -134980327 + Charlie4 DNA MER1_type 1860 1957 -4 313 162 14 14 chr11 13805393 13805467 -134978005 + GA-rich Low_complexity Low_complexity 3 76 0 191 203 16 0 chr11 13807458 13807522 -134975950 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 247 327 154 10 chr11 13807628 13807836 -134975636 + MIR SINE MIR 15 252 -10 234 260 52 52 chr11 13807942 13808019 -134975453 + L2 LINE L2 3169 3245 -27 737 271 72 32 chr11 13808077 13808147 -134975325 - MIR SINE MIR 0 262 196 607 252 126 6 chr11 13808147 13808306 -134975166 + MER5B DNA MER1_type 1 178 0 737 271 72 32 chr11 13808306 13808486 -134974986 - MIR SINE MIR -66 196 2 219 255 0 0 chr11 13808668 13808715 -134974757 + MIR SINE MIR 82 128 -80 363 185 15 0 chr11 13809313 13809378 -134974094 + L2 LINE L2 3246 3311 -2 640 242 81 31 chr11 13809923 13810084 -134973388 + MIR SINE MIR 7 175 -87 1688 150 6 70 chr11 13810829 13811143 -134972329 - AluJo SINE Alu -17 295 2 1799 206 194 15 chr11 13811154 13811768 -134971704 - L1MC4 LINE L1 0 8042 7239 206 192 13 51 chr11 13811771 13811849 -134971623 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 2307 66 14 7 chr11 13811958 13812247 -134971225 - AluY SINE Alu -20 291 1 915 259 31 42 chr11 13812570 13812829 -134970643 - MIR SINE MIR 0 262 7 2623 139 10 10 chr11 13815319 13815729 -134967743 + L1MB5 LINE L1 5765 6174 0 377 288 142 34 chr11 13816834 13817039 -134966433 + MIR SINE MIR 2 228 -34 1991 149 10 80 chr11 13817085 13817309 -134966163 - MLT1A1 LTR MaLR 0 365 178 1876 152 0 3 chr11 13817309 13817598 -134965874 - AluJo SINE Alu -16 296 9 1991 149 10 80 chr11 13817598 13817762 -134965710 - MLT1A1 LTR MaLR -187 178 4 355 333 133 27 chr11 13817983 13818277 -134965195 + LTR16C LTR ERVL 157 481 -10 1201 219 23 0 chr11 13818328 13818543 -134964929 - MER58A DNA MER1_type 0 224 5 622 231 90 1 chr11 13818883 13819159 -134964313 - MER46C DNA MER2_type 0 338 3 814 183 157 5 chr11 13819673 13819864 -134963608 + MIR SINE MIR 8 227 -35 2244 105 3 0 chr11 13820607 13820901 -134962571 - AluSq SINE Alu -18 295 1 631 306 108 27 chr11 13821526 13822304 -134961168 + L1MC4a LINE L1 3977 4817 -1329 333 197 13 13 chr11 13822740 13822816 -134960656 + LTR33 LTR ERVL 426 501 -20 392 307 132 18 chr11 13822832 13823112 -134960360 + L1MC4a LINE L1 4967 5278 -868 229 167 48 36 chr11 13823153 13823237 -134960235 + (TA)n Simple_repeat Simple_repeat 1 85 0 21 0 0 0 chr11 13823243 13823264 -134960208 + AT_rich Low_complexity Low_complexity 1 21 0 2085 114 0 26 chr11 13823264 13823571 -134959901 - AluSx SINE Alu -13 299 1 784 294 97 20 chr11 13823653 13824077 -134959395 + L1MC4a LINE L1 5476 5819 -302 2070 154 0 0 chr11 13824223 13824529 -134958943 - AluSx SINE Alu -6 306 1 200 259 35 17 chr11 13824745 13824803 -134958669 + MIR SINE MIR 86 144 -118 257 238 0 109 chr11 13825319 13825420 -134958052 + MER89 LTR ERV1 5 94 -465 * 1583 185 51 46 chr11 13825398 13825749 -134957723 + MER89 LTR ERV1 207 559 0 520 215 52 22 chr11 13826424 13826559 -134956913 + MER103 DNA DNA 26 164 -2 298 179 77 39 chr11 13827444 13827522 -134955950 + L2 LINE L2 3191 3271 -1 251 239 106 62 chr11 13828126 13828239 -134955233 - MIR SINE MIR -10 252 135 753 281 129 33 chr11 13828460 13829313 -134954159 - L1ME3A LINE L1 -273 5897 4943 6284 158 16 40 chr11 13829324 13830364 -134953108 - L1MC1 LINE L1 -6 6327 5264 2036 139 0 10 chr11 13830364 13830675 -134952797 - AluSx SINE Alu 0 308 1 2255 93 21 0 chr11 13830679 13830969 -134952503 - AluSx SINE Alu -16 296 1 6284 158 16 40 chr11 13830969 13831514 -134951958 - L1MC1 LINE L1 -1072 5261 4759 1316 319 148 40 chr11 13831514 13831638 -134951834 + L2 LINE L2 1566 1675 -1639 954 28 0 0 chr11 13831638 13831745 -134951727 + L1PA4 LINE L1 6046 6152 -3 1316 319 148 40 chr11 13831745 13832860 -134950612 + L2 LINE L2 1675 2939 -375 2078 157 3 3 chr11 13832941 13833247 -134950225 + AluJo SINE Alu 1 306 -6 342 284 169 22 chr11 13833399 13833624 -134949848 - MIR SINE MIR 0 262 5 207 200 12 18 chr11 13834084 13834166 -134949306 - MIR SINE MIR -66 142 21 421 189 94 31 chr11 13834556 13834683 -134948789 + L1ME4a LINE L1 5970 6104 -17 749 221 16 0 chr11 13834701 13834828 -134948644 - FLAM_A SINE Alu -4 129 1 490 312 32 37 chr11 13836118 13836307 -134947165 + MIR SINE MIR 11 198 -64 611 303 93 11 chr11 13836501 13836857 -134946615 - L1ME4a LINE L1 -23 6098 5714 4417 147 55 3 chr11 13837540 13838300 -134945172 - L1PA16 LINE L1 -20 6146 5353 514 250 45 13 chr11 13838889 13839045 -134944427 + MIR SINE MIR 70 230 -32 2601 127 42 10 chr11 13839052 13839461 -134944011 + MER61B LTR ERV1 4 425 0 189 0 0 0 chr11 13839713 13839734 -134943738 + (TG)n Simple_repeat Simple_repeat 2 22 0 280 309 66 29 chr11 13839968 13840104 -134943368 + MIR SINE MIR 3 143 -119 1664 141 59 40 chr11 13840354 13840658 -134942814 - AluJo SINE Alu -1 311 2 249 196 107 0 chr11 13840702 13840758 -134942714 - MIR SINE MIR -84 178 117 263 306 116 56 chr11 13841313 13841529 -134941943 - MIR SINE MIR -14 248 20 233 289 96 0 chr11 13843070 13843153 -134940319 + L2 LINE L2 2972 3062 -210 432 318 20 7 chr11 13843248 13843396 -134940076 + MER5B DNA MER1_type 26 175 -3 451 293 0 0 chr11 13843419 13843525 -134939947 + L2 LINE L2 3208 3313 0 516 274 17 0 chr11 13843646 13843763 -134939709 + L2 LINE L2 3193 3311 -2 378 300 100 0 chr11 13843818 13843938 -134939534 + MIR3 SINE MIR 56 187 -21 3714 160 36 46 chr11 13844042 13844818 -134938654 + LTR1 LTR ERV1 1 768 -17 2259 101 0 0 chr11 13844841 13845137 -134938335 - AluSg SINE Alu -14 296 1 909 243 131 16 chr11 13845522 13845835 -134937637 + L2 LINE L2 2614 2962 -352 387 273 59 37 chr11 13846195 13846382 -134937090 - MIR SINE MIR -51 211 21 343 299 87 31 chr11 13847561 13847688 -134935784 - L2 LINE L2 0 3272 3139 687 222 52 26 chr11 13847900 13848094 -134935378 - MIR SINE MIR -32 230 32 593 304 29 58 chr11 13848095 13848408 -134935064 - L1MC4a LINE L1 -1983 5825 5522 733 256 99 67 chr11 13848716 13849282 -134934190 + MLT1L LTR MaLR 2 615 0 237 234 43 0 chr11 13849420 13849514 -134933958 + (TA)n Simple_repeat Simple_repeat 1 98 0 777 235 16 33 chr11 13849526 13849709 -134933763 - MIR SINE MIR -73 189 10 381 286 158 15 chr11 13849707 13849910 -134933562 + L2 LINE L2 2313 2544 -770 * 264 360 79 14 chr11 13850052 13850191 -134933281 + L2 LINE L2 2913 3060 -212 345 248 113 45 chr11 13851185 13851318 -134932154 + MIR SINE MIR 50 191 -71 197 245 0 38 chr11 13851984 13852037 -134931435 + L2 LINE L2 3221 3271 -1 182 203 29 101 chr11 13852589 13852658 -134930814 + MIR SINE MIR 178 241 -21 1818 158 37 79 chr11 13853323 13853703 -134929769 + MLT1A1 LTR MaLR 2 365 0 29 47 0 0 chr11 13854017 13854060 -134929412 + AT_rich Low_complexity Low_complexity 1 43 0 308 206 54 22 chr11 13854278 13854370 -134929102 - MER117 DNA MER1_type -88 109 15 404 227 93 58 chr11 13854371 13854543 -134928929 - MER104 DNA MER2_type 0 180 3 397 283 88 19 chr11 13854979 13855138 -134928334 + MIR SINE MIR 80 249 -13 433 325 60 67 chr11 13855976 13856274 -134927198 - L2 LINE L2 0 3272 2977 556 305 79 5 chr11 13856820 13857010 -134926462 - MIR SINE MIR -34 228 25 248 230 115 23 chr11 13857202 13857289 -134926183 - L2 LINE L2 -497 2817 2723 186 320 81 30 chr11 13858582 13858779 -134924693 + L2 LINE L2 2233 2439 -875 * 490 304 106 94 chr11 13858771 13858879 -134924593 - L2 LINE L2 0 3272 3167 2013 191 22 11 chr11 13858879 13859240 -134924232 + MLT1A1 LTR MaLR 1 365 0 490 304 106 94 chr11 13859240 13859627 -134923845 - L2 LINE L2 -105 3167 2773 439 224 26 35 chr11 13859661 13859777 -134923695 - L2 LINE L2 -9 3304 3190 230 317 128 12 chr11 13859808 13859972 -134923500 - L2 LINE L2 -647 2667 2485 392 350 56 54 chr11 13860049 13860495 -134922977 - L2 LINE L2 -1648 1666 1220 545 173 12 9 chr11 13860534 13860707 -134922765 + MER2 DNA MER2_type 1 211 -134 24 0 0 0 chr11 13860714 13860738 -134922734 + AT_rich Low_complexity Low_complexity 1 24 0 729 213 170 43 chr11 13860796 13861077 -134922395 + MLT1D LTR MaLR 31 347 -158 1959 143 87 15 chr11 13861077 13861173 -134922299 + MER1B DNA MER1_type 1 89 -2623 3290 69 29 40 chr11 13861173 13861622 -134921850 + MLT2A1 LTR ERVL 1 444 0 1959 143 87 15 chr11 13861622 13861846 -134921626 + MER1B DNA MER1_type 89 339 0 985 182 0 6 chr11 13861846 13862008 -134921464 + MLT1D LTR MaLR 340 500 -5 329 323 101 12 chr11 13862022 13862270 -134921202 - L2 LINE L2 -2104 1210 941 219 339 63 42 chr11 13862376 13862565 -134920907 + L2 LINE L2 2588 2780 -534 486 273 162 23 chr11 13862819 13863035 -134920437 - MIR SINE MIR 0 262 17 301 238 135 16 chr11 13863358 13863484 -134919988 - L2 LINE L2 -1064 2250 2110 660 196 153 37 chr11 13863491 13863654 -134919818 + MER20 DNA MER1_type 8 189 -30 635 244 6 6 chr11 13863657 13863833 -134919639 + L1MA9 LINE L1 5029 5204 -942 1321 171 4 13 chr11 13863834 13864062 -134919410 + AluJo SINE Alu 87 312 0 4261 179 38 52 chr11 13864068 13864672 -134918800 + L1MA9 LINE L1 5192 5786 -526 306 50 0 0 chr11 13864672 13864712 -134918760 + (TG)n Simple_repeat Simple_repeat 2 41 0 4261 179 38 52 chr11 13864712 13865188 -134918284 + L1MA9 LINE L1 5786 6267 -45 2896 163 4 6 chr11 13865211 13865677 -134917795 + LTR42 LTR ERVL 1 465 -30 407 284 147 33 chr11 13865688 13865987 -134917485 - L2 LINE L2 -1289 2025 1693 338 311 20 66 chr11 13866439 13866635 -134916837 + MER5A DNA MER1_type 3 189 0 2717 218 55 34 chr11 13866987 13867895 -134915577 - L1MCc LINE L1 -5117 1824 19 246 315 22 11 chr11 13867917 13868006 -134915466 - MIR SINE MIR -108 154 65 873 289 99 12 chr11 13868321 13868663 -134914809 - L2 LINE L2 -18 3295 2924 254 366 28 28 chr11 13868678 13868894 -134914578 + L3 LINE CR1 675 890 -687 2058 103 55 3 chr11 13869150 13869441 -134914031 + AluSq SINE Alu 1 306 -7 336 183 49 24 chr11 13869524 13869606 -134913866 + L2 LINE L2 3192 3275 -38 298 223 71 45 chr11 13870610 13870722 -134912750 + MIR SINE MIR 67 181 -81 329 378 39 0 chr11 13870758 13870885 -134912587 - L2 LINE L2 0 3272 3141 236 281 16 0 chr11 13871344 13871408 -134912064 - MIR SINE MIR -12 250 186 1025 210 62 93 chr11 13871824 13872277 -134911195 + L1ME4a LINE L1 5645 6083 -38 2076 120 63 38 chr11 13873192 13873558 -134909914 + THE1C LTR MaLR 1 375 0 407 231 103 74 chr11 13873634 13873837 -134909635 - L2 LINE L2 0 3313 3105 455 297 30 96 chr11 13874005 13874338 -134909134 - L3 LINE CR1 -553 1024 714 459 288 31 16 chr11 13874432 13874623 -134908849 + L1ME LINE L1 5577 5770 -351 591 281 62 53 chr11 13875050 13875391 -134908081 - L2 LINE L2 -15 3298 2955 33631 102 15 56 chr11 13875837 13882485 -134900987 + L1PA7 LINE L1 2 6154 0 460 221 11 0 chr11 13882719 13882814 -134900658 + L2 LINE L2 3176 3271 -1 414 241 18 112 chr11 13883085 13883255 -134900217 + MIR SINE MIR 90 243 -19 892 269 44 8 chr11 13883288 13883537 -134899935 + MIR SINE MIR 4 261 -1 1195 166 11 5 chr11 13883691 13883878 -134899594 - MER5A DNA MER1_type -1 188 1 232 170 19 19 chr11 13884008 13884061 -134899411 - L2 LINE L2 0 3313 3261 2387 165 28 5 chr11 13884158 13884545 -134898927 + MSTD LTR MaLR 1 396 0 559 198 26 141 chr11 13884558 13884750 -134898722 + MIR SINE MIR 90 259 -3 189 357 21 42 chr11 13885380 13885523 -134897949 - L3b LINE CR1 -324 1259 1120 625 221 35 14 chr11 13886409 13886554 -134896918 + MLT1J2 LTR MaLR 1 148 -302 1048 166 148 42 chr11 13886580 13886656 -134896816 - MER44D DNA MER2_type -1907 584 517 306 0 0 0 chr11 13886656 13886690 -134896782 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1048 166 148 42 chr11 13886690 13886896 -134896576 - MER44D DNA MER2_type -1974 517 2 771 281 100 21 chr11 13886896 13887165 -134896307 + MLT1J2 LTR MaLR 146 436 -14 2468 93 0 0 chr11 13887231 13887542 -134895930 + AluY SINE Alu 1 311 0 341 315 84 14 chr11 13887643 13887786 -134895686 + L2 LINE L2 3111 3263 -9 332 364 8 0 chr11 13887855 13887987 -134895485 - MIR3 SINE MIR -5 203 71 551 53 0 0 chr11 13888239 13888314 -134895158 + L1PA4 LINE L1 6081 6155 0 2178 105 10 3 chr11 13888516 13888810 -134894662 + AluSx SINE Alu 1 296 -16 534 272 31 57 chr11 13889191 13889419 -134894053 + LTR16A1 LTR ERVL 208 429 -28 1932 203 45 7 chr11 13889435 13889853 -134893619 + MLT1C LTR MaLR 34 467 0 250 321 0 0 chr11 13890228 13890312 -134893160 + MIR SINE MIR 131 214 -48 2993 248 42 25 chr11 13890474 13890819 -134892653 + L1ME3A LINE L1 4519 4857 -1313 531 106 0 59 chr11 13890819 13890904 -134892568 + MADE1 DNA Mariner 1 80 0 2993 248 42 25 chr11 13890904 13892167 -134891305 + L1ME3A LINE L1 4857 6163 -7 328 269 244 6 chr11 13892700 13892860 -134890612 + MIR SINE MIR 50 247 -15 296 215 0 11 chr11 13892868 13892961 -134890511 + (ATG)n Simple_repeat Simple_repeat 3 94 0 468 331 20 0 chr11 13893312 13893460 -134890012 + L2 LINE L2 3121 3271 -1 405 307 41 83 chr11 13893576 13893915 -134889557 - L2 LINE L2 -20 3252 2928 199 323 21 37 chr11 13893967 13894156 -134889316 - L2 LINE L2 -452 2862 2677 386 301 67 23 chr11 13894987 13895168 -134888304 + MIR SINE MIR 28 216 -46 22 0 0 0 chr11 13895182 13895204 -134888268 + AT_rich Low_complexity Low_complexity 1 22 0 281 238 83 0 chr11 13895204 13895288 -134888184 + MIR SINE MIR 120 210 -52 383 340 29 29 chr11 13895623 13895829 -134887643 + MLT1K LTR MaLR 216 421 -167 702 237 41 12 chr11 13895902 13896071 -134887401 + MLT1K LTR MaLR 412 585 -3 830 310 172 18 chr11 13896239 13896920 -134886552 + L3 LINE CR1 576 1361 -216 23 0 0 0 chr11 13897307 13897330 -134886142 + AT_rich Low_complexity Low_complexity 1 23 0 708 285 158 12 chr11 13897858 13898275 -134885197 - L2 LINE L2 -9 3304 2827 1657 182 7 23 chr11 13899457 13899759 -134883713 - AluJb SINE Alu -15 297 1 806 298 14 39 chr11 13899878 13900157 -134883315 + MLT1J LTR MaLR 1 272 -239 848 216 129 14 chr11 13900207 13900494 -134882978 - MER33 DNA MER1_type 0 324 5 275 196 18 0 chr11 13900503 13900559 -134882913 + MLT1J LTR MaLR 325 381 -130 191 77 0 77 chr11 13901297 13901336 -134882136 + (T)n Simple_repeat Simple_repeat 1 36 0 563 292 50 10 chr11 13901661 13901863 -134881609 + MIR SINE MIR 15 224 -38 434 291 62 4 chr11 13901914 13902141 -134881331 - MIR SINE MIR -4 258 8 304 209 219 19 chr11 13903869 13903974 -134879498 - MIR SINE MIR -67 141 16 204 97 0 0 chr11 13906115 13906146 -134877326 + (AGCTG)n Simple_repeat Simple_repeat 3 33 0 218 298 28 35 chr11 13906432 13906573 -134876899 - MIR SINE MIR -6 256 117 995 175 134 0 chr11 13906680 13906897 -134876575 - ORSL DNA AcHobo -27 248 3 280 325 75 0 chr11 13907055 13907175 -134876297 + MIR3 SINE MIR 33 161 -47 185 244 59 67 chr11 13907573 13907692 -134875780 + L2 LINE L2 1882 1999 -1315 196 335 70 0 chr11 13907788 13907868 -134875604 - L2 LINE L2 -3 3310 3237 300 120 0 0 chr11 13907868 13907918 -134875554 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 196 335 70 0 chr11 13907918 13908029 -134875443 - L2 LINE L2 -76 3237 3117 418 282 72 72 chr11 13908619 13909043 -134874429 + L2 LINE L2 2555 3061 -211 347 141 16 0 chr11 13909098 13909162 -134874310 + CT-rich Low_complexity Low_complexity 3 67 0 835 176 0 0 chr11 13909182 13909313 -134874159 - FLAM_C SINE Alu -1 132 2 369 308 14 21 chr11 13909377 13909520 -134873952 + L2 LINE L2 3171 3312 -1 276 286 110 0 chr11 13910233 13910324 -134873148 + MER5A DNA MER1_type 2 102 -87 464 197 161 29 chr11 13914762 13914899 -134868573 - MIR SINE MIR -24 238 84 414 183 12 12 chr11 13915634 13915716 -134867756 + L2 LINE L2 3191 3272 0 654 257 10 35 chr11 13915848 13916050 -134867422 + L2 LINE L2 3113 3309 -4 242 260 0 39 chr11 13916111 13916188 -134867284 - L3 LINE CR1 -159 1418 1345 2628 193 99 0 chr11 13916232 13916739 -134866733 + MLT1F1 LTR MaLR 1 557 -10 214 307 40 40 chr11 13916805 13916906 -134866566 - L3 LINE CR1 -403 1174 1074 620 325 27 25 chr11 13917505 13917763 -134865709 + MIR SINE MIR 4 262 0 336 274 203 0 chr11 13917764 13917917 -134865555 - L3 LINE CR1 -789 788 605 241 302 38 19 chr11 13917996 13918102 -134865370 - L3 LINE CR1 -996 581 474 958 66 1 4 chr11 13918103 13918227 -134865245 + L1M4 LINE L1 5646 5767 -398 1326 60 6 0 chr11 13918227 13918391 -134865081 + L1PA5 LINE L1 5986 6153 -1 552 277 74 76 chr11 13918624 13919125 -134864347 + MLT1J LTR MaLR 1 500 -11 2771 160 2 32 chr11 13919358 13919821 -134863651 + MER70A LTR ERVL 24 472 0 221 81 0 27 chr11 13920691 13920728 -134862744 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1193 62 0 0 chr11 13920728 13920873 -134862599 - MER107 DNA MER1_type -52 145 1 1020 261 110 0 chr11 13920877 13921141 -134862331 - MER58B DNA MER1_type -48 293 1 205 410 0 0 chr11 13921693 13921793 -134861679 + L2 LINE L2 3148 3247 -25 777 267 102 39 chr11 13921858 13922191 -134861281 - MLT1L LTR MaLR -115 500 147 1096 156 0 95 chr11 13922194 13922383 -134861089 + MER20 DNA MER1_type 5 170 -49 2349 113 0 3 chr11 13922383 13922693 -134860779 + AluSc SINE Alu 1 309 0 1096 156 0 95 chr11 13922693 13922734 -134860738 + MER20 DNA MER1_type 170 213 -6 379 188 23 188 chr11 13922740 13922916 -134860556 - MLT1L LTR MaLR -461 154 8 240 328 43 0 chr11 13923177 13923293 -134860179 - MIR SINE MIR -31 231 111 489 251 62 34 chr11 13924423 13924638 -134858834 - MLT1H LTR MaLR -2 548 329 1151 177 107 69 chr11 13926079 13926454 -134857018 - MLT1E1 LTR MaLR 0 654 190 1724 179 0 7 chr11 13926454 13926745 -134856727 + AluJo SINE Alu 1 289 -23 1151 177 107 69 chr11 13926745 13926943 -134856529 - MLT1E1 LTR MaLR -464 190 1 2069 117 4 0 chr11 13927108 13927413 -134856059 - AluSq SINE Alu 0 306 1 192 40 0 0 chr11 13927417 13927442 -134856030 + (TTA)n Simple_repeat Simple_repeat 1 25 0 460 276 59 6 chr11 13927603 13927773 -134855699 - MIR SINE MIR -30 232 54 42758 59 3 4 chr11 13929337 13932276 -134851196 + L1P2 LINE L1 1 2930 -3224 2577 68 0 0 chr11 13932276 13932584 -134850888 + AluY SINE Alu 2 309 -2 42758 59 3 4 chr11 13932584 13935412 -134848060 + L1P2 LINE L1 2930 5760 -394 1572 315 93 28 chr11 14135447 14135554 -134647918 + L2 LINE L2 1988 2087 -1227 1345 201 37 0 chr11 14135554 14135853 -134647619 - L1MA6 LINE L1 0 6300 5991 1572 315 93 28 chr11 14135853 14136530 -134646942 + L2 LINE L2 2087 2823 -491 2257 68 0 17 chr11 14136632 14136926 -134646546 - AluY SINE Alu -22 289 1 35 24 0 0 chr11 14137624 14137666 -134645806 + AT_rich Low_complexity Low_complexity 1 42 0 1891 168 0 3 chr11 14137722 14138020 -134645452 - AluSx SINE Alu -15 297 1 2413 81 0 0 chr11 14138226 14138523 -134644949 + AluSx SINE Alu 1 297 -15 925 117 4 18 chr11 14138569 14138817 -134644655 + AluSx SINE Alu 1 301 -11 874 127 0 15 chr11 14139486 14139620 -134643852 - FLAM_C SINE Alu 0 133 2 3223 60 22 44 chr11 14139732 14139944 -134643528 + MLT2A1 LTR ERVL 1 216 -228 2257 103 0 7 chr11 14139944 14140246 -134643226 + AluSq SINE Alu 1 300 -13 3223 60 22 44 chr11 14140246 14140487 -134642985 + MLT2A1 LTR ERVL 216 444 0 2104 106 7 0 chr11 14140922 14141245 -134642227 + AluSp SINE Alu 1 325 0 234 294 193 0 chr11 14141471 14141580 -134641892 - MIR SINE MIR -19 243 114 476 308 73 21 chr11 14141605 14141839 -134641633 + MIR SINE MIR 14 259 -3 1709 151 4 0 chr11 14142366 14142624 -134640848 - AluJb SINE Alu -9 303 45 1491 85 10 10 chr11 14142725 14142924 -134640548 + AluSc SINE Alu 97 295 -14 763 160 24 0 chr11 14142964 14143089 -134640383 - FLAM_C SINE Alu -3 130 3 1330 181 79 29 chr11 14143106 14143383 -134640089 - AluJo SINE Alu -21 291 1 234 0 0 0 chr11 14143435 14143461 -134640011 + (A)n Simple_repeat Simple_repeat 1 26 0 512 231 116 0 chr11 14144068 14144215 -134639257 + MER103 DNA DNA 3 166 0 186 43 0 0 chr11 14144452 14144475 -134638997 + (T)n Simple_repeat Simple_repeat 1 23 0 2470 64 0 0 chr11 14145232 14145528 -134637944 + AluY SINE Alu 1 296 -15 22 35 0 0 chr11 14145723 14145752 -134637720 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr11 14145783 14145826 -134637646 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr11 14146163 14146192 -134637280 + AT_rich Low_complexity Low_complexity 1 29 0 1314 109 0 6 chr11 14146346 14146521 -134636951 - AluSg/x SINE Alu -7 305 132 2326 82 7 20 chr11 14147035 14147339 -134636133 - AluSx SINE Alu -12 300 1 427 177 91 0 chr11 14147379 14147480 -134635992 + L1ME1 LINE L1 6065 6182 -2 200 343 19 19 chr11 14147483 14147588 -134635884 + L2 LINE L2 3126 3230 -83 25 65 0 0 chr11 14147650 14147696 -134635776 + AT_rich Low_complexity Low_complexity 1 46 0 2109 138 0 3 chr11 14147889 14148187 -134635285 - AluSx SINE Alu -14 298 2 1852 138 50 0 chr11 14148792 14149075 -134634397 - AluJb SINE Alu -15 297 1 782 263 52 0 chr11 14149709 14149903 -134633569 - MIR SINE MIR -14 248 45 2140 135 15 9 chr11 14150077 14150417 -134633055 + MER2 DNA MER2_type 2 343 -1 2292 107 0 3 chr11 14150495 14150803 -134632669 - AluSg SINE Alu -3 307 1 413 349 198 31 chr11 14150841 14151580 -134631892 + L2 LINE L2 1397 2011 -1303 2122 129 3 10 chr11 14151580 14151891 -134631581 - AluSx SINE Alu -3 309 1 413 349 198 31 chr11 14151891 14152420 -134631052 + L2 LINE L2 2011 2877 -437 363 331 54 24 chr11 14152920 14153086 -134630386 + L2 LINE L2 3102 3272 0 432 0 0 0 chr11 14153334 14153382 -134630090 + (CA)n Simple_repeat Simple_repeat 2 49 0 1127 168 0 11 chr11 14153610 14153801 -134629671 - AluJo SINE Alu -18 294 106 5118 151 32 12 chr11 14155278 14156339 -134627133 + L1MB3 LINE L1 5099 6183 0 22 35 0 0 chr11 14156341 14156370 -134627102 + AT_rich Low_complexity Low_complexity 1 29 0 1753 179 3 7 chr11 14157261 14157562 -134625910 - AluJo SINE Alu -6 306 7 544 265 236 18 chr11 14158167 14158658 -134624814 - L1MC4 LINE L1 -84 7958 7361 255 175 63 32 chr11 14158852 14158915 -134624557 + L1MEc LINE L1 415 479 -5917 1068 272 70 19 chr11 14158959 14159171 -134624301 + L1MEc LINE L1 1254 1454 -4942 414 0 0 0 chr11 14159171 14159217 -134624255 + (CA)n Simple_repeat Simple_repeat 2 47 0 1068 272 70 19 chr11 14159217 14159522 -134623950 + L1MEc LINE L1 1454 1797 -4599 2212 85 0 14 chr11 14159907 14160202 -134623270 + AluSq SINE Alu 1 291 -22 8888 123 40 19 chr11 14160429 14161238 -134622234 - Tigger1 DNA MER2_type -946 1472 620 2094 108 30 3 chr11 14161238 14161533 -134621939 - AluSg SINE Alu -4 306 4 8888 123 40 19 chr11 14161533 14162166 -134621306 - Tigger1 DNA MER2_type -1798 620 1 358 270 176 0 chr11 14162166 14162312 -134621160 + MER2 DNA MER2_type 174 345 0 182 225 0 0 chr11 14162708 14162748 -134620724 + L2 LINE L2 3271 3310 -3 2330 100 7 0 chr11 14163085 14163395 -134620077 + AluSx SINE Alu 1 312 0 445 242 100 0 chr11 14163521 14163641 -134619831 + MIR SINE MIR 117 248 -14 311 258 57 6 chr11 14164363 14164473 -134618999 + MIR SINE MIR 2 143 -65 408 335 21 53 chr11 14164723 14164911 -134618561 - MIR3 SINE MIR -17 191 10 186 43 0 0 chr11 14165031 14165054 -134618418 + (T)n Simple_repeat Simple_repeat 1 23 0 807 61 35 0 chr11 14165389 14165503 -134617969 + AluY SINE Alu 16 133 -178 397 119 17 0 chr11 14165701 14165760 -134617712 + U7 snRNA snRNA 2 61 -2 216 0 0 0 chr11 14165766 14165790 -134617682 + (A)n Simple_repeat Simple_repeat 1 24 0 1582 189 10 17 chr11 14166611 14166912 -134616560 - AluJo SINE Alu -13 299 1 21 71 0 0 chr11 14167507 14167549 -134615923 + AT_rich Low_complexity Low_complexity 1 42 0 298 275 91 42 chr11 14168122 14168406 -134615066 + L1MC4a LINE L1 7315 7636 -172 725 219 269 12 chr11 14168510 14168602 -134614870 - L1MC4 LINE L1 -11 8031 7964 2085 124 3 13 chr11 14168602 14168900 -134614572 - AluSx SINE Alu -17 295 1 725 219 269 12 chr11 14168900 14169127 -134614345 - L1MC4 LINE L1 -78 7964 7630 2365 85 0 3 chr11 14169349 14169644 -134613828 - AluSx SINE Alu -18 294 1 284 0 28 0 chr11 14170032 14170068 -134613404 + (CA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr11 14170410 14170446 -134613026 + AT_rich Low_complexity Low_complexity 1 36 0 3064 189 71 46 chr11 14170476 14171249 -134612223 + L1MC4a LINE L1 6947 7744 -64 2233 113 0 3 chr11 14171249 14171551 -134611921 + AluSc SINE Alu 4 304 -5 3064 189 71 46 chr11 14171551 14171618 -134611854 + L1MC4a LINE L1 7744 7808 0 1219 163 69 105 chr11 14171823 14172129 -134611343 - AluJo SINE Alu -6 296 2 691 195 0 0 chr11 14172152 14172275 -134611197 - FLAM_C SINE Alu -20 123 1 1977 111 52 85 chr11 14172278 14172373 -134611099 - Tigger2a DNA MER2_type -2334 374 277 2034 123 17 3 chr11 14172373 14172665 -134610807 + AluSx SINE Alu 1 296 -16 1977 111 52 85 chr11 14172665 14172956 -134610516 - Tigger2a DNA MER2_type -2431 277 1 2248 114 3 0 chr11 14174203 14174511 -134608961 + AluSg SINE Alu 1 309 -1 25 31 0 0 chr11 14175180 14175212 -134608260 + AT_rich Low_complexity Low_complexity 1 32 0 3970 166 22 9 chr11 14175964 14176705 -134606767 + L1MB3 LINE L1 5427 6176 -7 23 0 0 0 chr11 14177105 14177128 -134606344 + AT_rich Low_complexity Low_complexity 1 23 0 2140 117 3 3 chr11 14177595 14177894 -134605578 - AluSg SINE Alu -9 301 3 954 115 8 0 chr11 14177897 14178027 -134605445 - AluSc SINE Alu -54 255 125 2253 117 0 0 chr11 14178269 14178577 -134604895 + AluSq SINE Alu 1 308 -5 483 272 10 77 chr11 14178709 14178904 -134604568 - MER102a DNA MER1_type -9 321 140 284 277 121 15 chr11 14179947 14180102 -134603370 + MIR3 SINE MIR 2 176 -32 328 256 0 12 chr11 14180770 14180852 -134602620 + L3 LINE CR1 1317 1397 -180 1009 113 0 0 chr11 14180934 14181067 -134602405 - AluSq/x SINE Alu -177 135 3 24 0 0 0 chr11 14181656 14181680 -134601792 + AT_rich Low_complexity Low_complexity 1 24 0 6871 119 30 7 chr11 14181740 14183722 -134599750 + L1MA2 LINE L1 4277 6303 -1 301 221 92 107 chr11 14184946 14185077 -134598395 + L1MDb LINE L1 597 725 -5684 629 225 127 6 chr11 14185361 14185534 -134597938 + MLT1L LTR MaLR 422 615 0 38956 81 13 7 chr11 14186035 14192149 -134591323 - L1PA6 LINE L1 -1 6153 11 334 327 10 10 chr11 14193012 14193113 -134590359 - MIR SINE MIR -155 107 7 550 240 53 0 chr11 14194917 14195067 -134588405 + Tigger8 DNA MER2_type 335 492 -174 2009 166 130 6 chr11 14196161 14196629 -134586843 - L1MC4a LINE L1 -2 7806 5815 1929 143 14 7 chr11 14197282 14197575 -134585897 - AluJo SINE Alu -17 295 1 2273 80 0 14 chr11 14197990 14198276 -134585196 - AluSx SINE Alu -19 293 12 339 25 0 0 chr11 14198454 14198494 -134584978 + (TG)n Simple_repeat Simple_repeat 1 40 0 183 246 88 0 chr11 14198833 14198890 -134584582 - MIR SINE MIR -93 115 54 2307 48 65 3 chr11 14198990 14199283 -134584189 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 14199293 14199319 -134584153 + AT_rich Low_complexity Low_complexity 1 26 0 2353 89 0 7 chr11 14199319 14199612 -134583860 - AluSp SINE Alu -22 291 1 21 0 0 0 chr11 14200721 14200742 -134582730 + AT_rich Low_complexity Low_complexity 1 21 0 586 144 16 176 chr11 14200742 14200992 -134582480 + Tigger2 DNA MER2_type 1 210 -2508 1696 182 0 19 chr11 14200992 14201300 -134582172 + AluJo SINE Alu 1 302 -10 829 188 40 0 chr11 14201310 14201459 -134582013 + Tigger2 DNA MER2_type 2554 2708 -10 782 218 65 123 chr11 14201962 14202411 -134581061 + MLT1H LTR MaLR 120 542 -7 2372 76 3 3 chr11 14202432 14202735 -134580737 - AluSc SINE Alu -6 303 1 1955 242 166 98 chr11 14203371 14204748 -134578724 + L2 LINE L2 1201 2671 -643 333 102 0 0 chr11 14204764 14204813 -134578659 - AluSx SINE Alu -6 295 247 1196 121 0 0 chr11 14204813 14204970 -134578502 - AluSx SINE Alu -155 157 1 2574 45 0 29 chr11 14204983 14205292 -134578180 - AluY SINE Alu -11 300 1 1035 280 149 23 chr11 14205293 14205887 -134577585 + L2 LINE L2 2664 3311 -2 3011 226 118 11 chr11 14206568 14206654 -134576818 + L1M4 LINE L1 3626 3701 -2445 225 0 0 0 chr11 14206654 14206679 -134576793 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3011 226 118 11 chr11 14206679 14207362 -134576110 + L1M4 LINE L1 3701 4501 -1645 2367 90 3 0 chr11 14207362 14207663 -134575809 + AluSp SINE Alu 1 302 -11 3011 226 118 11 chr11 14207663 14207767 -134575705 + L1M4 LINE L1 4501 4593 -1553 816 273 125 29 chr11 14207788 14208099 -134575373 + MER68 LTR ERV1 215 555 -7 237 130 87 0 chr11 14208122 14208168 -134575304 - MER103 DNA DNA -114 52 3 181 315 41 27 chr11 14208561 14208634 -134574838 + MER5A DNA MER1_type 76 149 -40 21 0 0 0 chr11 14208711 14208732 -134574740 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 14208802 14208822 -134574650 + (A)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr11 14209017 14209054 -134574418 + AT_rich Low_complexity Low_complexity 1 37 0 1006 183 29 14 chr11 14210511 14210719 -134572753 + MER33 DNA MER1_type 6 216 -108 1763 87 0 0 chr11 14210822 14211041 -134572431 - AluSq SINE Alu -12 301 83 21 0 0 0 chr11 14211219 14211240 -134572232 + AT_rich Low_complexity Low_complexity 1 21 0 2372 88 7 0 chr11 14211240 14211535 -134571937 + AluSx SINE Alu 1 297 -15 1781 164 10 3 chr11 14212702 14212995 -134570477 - AluJo SINE Alu -17 295 1 1424 214 55 48 chr11 14213021 14213442 -134570030 - L1MA9 LINE L1 -39 6273 5850 242 301 43 11 chr11 14214339 14214432 -134569040 + MIR3 SINE MIR 85 180 -28 314 23 186 0 chr11 14215442 14215485 -134567987 - MADE1 DNA Mariner -2 78 28 237 289 175 21 chr11 14215571 14215668 -134567804 + L2 LINE L2 3141 3252 -20 1405 171 45 34 chr11 14215772 14215895 -134567577 + AluJo SINE Alu 1 121 -191 210 105 0 0 chr11 14215895 14215933 -134567539 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1405 171 45 34 chr11 14215933 14216101 -134567371 + AluJo SINE Alu 121 295 -17 2243 59 63 0 chr11 14216101 14216386 -134567086 + AluSg SINE Alu 1 304 -6 413 219 63 0 chr11 14216387 14216496 -134566976 - L1ME LINE L1 -539 5583 5470 284 284 25 0 chr11 14216540 14216621 -134566851 + L2 LINE L2 3231 3313 0 902 273 80 36 chr11 14216807 14217330 -134566142 - L1ME4a LINE L1 -296 5825 5280 447 225 0 0 chr11 14217512 14217592 -134565880 + L2 LINE L2 3234 3313 0 1896 164 0 3 chr11 14217875 14218168 -134565304 - AluJo SINE Alu -20 292 1 1944 140 27 0 chr11 14218188 14218480 -134564992 - AluJo SINE Alu -12 300 1 665 188 30 38 chr11 14218591 14218724 -134564748 + AluJo SINE Alu 2 133 -169 189 171 0 0 chr11 14218739 14218774 -134564698 + GA-rich Low_complexity Low_complexity 4 38 0 532 188 0 0 chr11 14218778 14218858 -134564614 + AluJo SINE Alu 130 209 -103 1409 176 113 74 chr11 14218858 14219291 -134564181 + LTR7 LTR ERV1 1 450 0 712 161 35 7 chr11 14219291 14219434 -134564038 + HERVH LTR ERV1 1 147 -7566 * 13922 104 13 8 chr11 14219431 14221470 -134562002 + HERVH LTR ERV1 1945 3993 -3720 6081 122 5 4 chr11 14221453 14222375 -134561097 + HERVH LTR ERV1 3995 5287 -1804 * 281 29 0 0 chr11 14222374 14222408 -134561064 + HERVH LTR ERV1 4882 4915 -2798 * 1507 173 8 0 chr11 14222405 14222671 -134560801 + HERVH LTR ERV1 5749 6016 -1697 * 3522 114 14 23 chr11 14222664 14223226 -134560246 + HERVH LTR ERV1 7157 7713 0 1329 170 119 77 chr11 14223227 14223656 -134559816 + LTR7 LTR ERV1 2 448 -2 472 89 241 0 chr11 14223660 14223739 -134559733 + AluJo SINE Alu 205 302 -10 493 176 40 101 chr11 14224544 14224692 -134558780 + L2 LINE L2 3175 3313 0 2313 110 0 0 chr11 14225219 14225518 -134557954 + AluSg SINE Alu 1 299 -11 597 292 123 9 chr11 14225685 14225732 -134557740 + LTR33 LTR ERVL 1 41 -480 2315 145 47 0 chr11 14225732 14226054 -134557418 - L1PA16 LINE L1 0 6166 5824 1835 175 10 0 chr11 14226054 14226357 -134557115 - AluJb SINE Alu -6 306 1 2315 145 47 0 chr11 14226357 14226393 -134557079 - L1PA16 LINE L1 -342 5824 5791 597 292 123 9 chr11 14226393 14226564 -134556908 + LTR33 LTR ERVL 41 244 -277 416 219 34 50 chr11 14226940 14227059 -134556413 - MLT1L LTR MaLR -325 290 174 227 239 14 42 chr11 14227110 14227181 -134556291 - MLT1L LTR MaLR -542 73 5 441 0 0 0 chr11 14227321 14227370 -134556102 + (TC)n Simple_repeat Simple_repeat 1 49 0 506 302 111 5 chr11 14227727 14227916 -134555556 + MIR SINE MIR 23 231 -31 581 240 52 70 chr11 14227940 14228169 -134555303 - L2 LINE L2 -89 3224 3000 418 260 0 19 chr11 14228195 14228299 -134555173 - L2 LINE L2 -2 3311 3210 2315 83 0 0 chr11 14228299 14228589 -134554883 + AluY SINE Alu 1 290 -21 207 0 0 0 chr11 14228606 14228629 -134554843 + (GA)n Simple_repeat Simple_repeat 2 24 0 3849 144 65 73 chr11 14228713 14230097 -134553375 - pTR5 LTR ERV1 0 2438 66 314 288 96 35 chr11 14230365 14230563 -134552909 + L2 LINE L2 1837 2046 -1268 2549 147 40 7 chr11 14230616 14231066 -134552406 - L1MB3 LINE L1 -2 6181 5717 1323 166 67 107 chr11 14231140 14231513 -134551959 + LTR47B LTR ERVL 1 358 -85 587 207 7 0 chr11 14231520 14231655 -134551817 + (TA)n Simple_repeat Simple_repeat 2 137 0 924 247 96 53 chr11 14231655 14232032 -134551440 - L2 LINE L2 -97 3216 2824 652 302 31 36 chr11 14232061 14232283 -134551189 - L2 LINE L2 -350 2964 2744 273 323 48 118 chr11 14232688 14233044 -134550428 + L2 LINE L2 2941 3271 -1 437 263 225 10 chr11 14233140 14233349 -134550123 - MIR SINE MIR 0 262 9 754 266 109 46 chr11 14233389 14233848 -134549624 - LTR33A LTR ERVL -24 499 12 1864 127 0 4 chr11 14233962 14234229 -134549243 + AluSc SINE Alu 39 304 -5 2194 124 0 0 chr11 14234536 14234834 -134548638 - AluSx SINE Alu -14 298 1 248 288 12 25 chr11 14235024 14235104 -134548368 - MER5B DNA MER1_type -50 128 50 318 161 0 36 chr11 14235110 14235166 -134548306 - MER31A LTR ERV1 -82 403 350 235 245 0 19 chr11 14235170 14235223 -134548249 - MER5B DNA MER1_type -126 52 1 258 56 0 0 chr11 14236456 14236492 -134546980 + (A)n Simple_repeat Simple_repeat 1 36 0 225 221 21 11 chr11 14237734 14237829 -134545643 + GA-rich Low_complexity Low_complexity 1 96 0 2121 117 3 41 chr11 14238153 14238469 -134545003 + AluSx SINE Alu 1 304 -8 197 33 33 0 chr11 14238502 14238532 -134544940 + (TTG)n Simple_repeat Simple_repeat 1 31 0 338 187 120 13 chr11 14238545 14238620 -134544852 + MER69 DNA AcHobo 1 62 -115 477 193 82 7 chr11 14238746 14238881 -134544591 + MER69 DNA AcHobo 2381 2525 -1 851 287 64 38 chr11 14238982 14239355 -134544117 + MLT1K LTR MaLR 206 588 0 524 216 0 61 chr11 14239460 14239608 -134543864 - MIR SINE MIR -41 221 83 507 335 85 46 chr11 14240334 14240907 -134542565 - L2 LINE L2 -1 3271 2675 1106 210 163 70 chr11 14241413 14241842 -134541630 + MLT1D LTR MaLR 18 486 -19 184 233 256 22 chr11 14241945 14242035 -134541437 + MIR SINE MIR 86 196 -66 1921 60 8 4 chr11 14242750 14243001 -134540471 - L1PA7 LINE L1 -1 6153 5902 956 249 19 5 chr11 14243169 14243374 -134540098 + MIR SINE MIR 7 214 -48 384 264 32 19 chr11 14243426 14243581 -134539891 - L2 LINE L2 -2421 893 737 712 227 4 134 chr11 14243582 14243844 -134539628 + MIR SINE MIR 12 238 -24 8495 48 0 21 chr11 14243844 14245718 -134537754 + L1PA5 LINE L1 4293 6148 -6 712 227 4 134 chr11 14245718 14245732 -134537740 + MIR SINE MIR 238 252 -10 2416 102 13 5 chr11 14245748 14246120 -134537352 - THE1C-int LTR MaLR -1205 375 1 2445 115 30 3 chr11 14246120 14246485 -134536987 - THE1C LTR MaLR 0 375 1 3502 184 70 0 chr11 14246485 14247166 -134536306 - MST-int LTR MaLR -690 961 233 29787 82 9 6 chr11 14247166 14249621 -134533851 - L1P LINE L1 -1852 4294 1816 2050 107 0 4 chr11 14249621 14249922 -134533550 + AluY SINE Alu 1 300 0 29787 82 9 6 chr11 14249922 14251745 -134531727 - L1P LINE L1 -4330 1816 1 1962 129 114 9 chr11 14251747 14252088 -134531384 + THE1-int LTR MaLR 361 737 -843 480 273 36 0 chr11 14252370 14252509 -134530963 + MER117 DNA MER1_type 1 144 -53 3198 179 42 14 chr11 14252817 14253452 -134530020 + MER82 DNA MER2_type 1 653 0 1631 245 90 51 chr11 14254542 14255382 -134528090 + L2 LINE L2 2456 3309 -4 1283 234 46 7 chr11 14255451 14255905 -134527567 + L1M4 LINE L1 2997 3468 -2678 1848 154 26 22 chr11 14255905 14256216 -134527256 + AluJb SINE Alu 1 312 0 3856 168 47 10 chr11 14256243 14257012 -134526460 + L1MD1 LINE L1 5445 6241 -1 342 241 105 23 chr11 14257219 14257352 -134526120 + L1ME4a LINE L1 5977 6120 -1 286 270 190 15 chr11 14257365 14257502 -134525970 - L3 LINE CR1 -37 1540 1380 324 334 48 57 chr11 14257908 14258112 -134525360 + L1M4 LINE L1 4456 4657 -1489 1358 107 226 8 chr11 14258112 14258355 -134525117 + AluJb SINE Alu 1 296 -16 324 334 48 57 chr11 14258355 14258464 -134525008 + L1M4 LINE L1 4657 4766 -1380 666 231 48 11 chr11 14258892 14259078 -134524394 + LTR33A LTR ERVL 331 523 0 704 22 33 0 chr11 14259103 14259195 -134524277 + (TTTAG)n Simple_repeat Simple_repeat 1 95 0 359 298 70 48 chr11 14259889 14260117 -134523355 - L1ME4a LINE L1 -4 6117 5885 476 357 13 37 chr11 14260131 14260431 -134523041 + HERVL LTR ERVL 4572 4864 -790 1050 264 107 22 chr11 14260788 14261189 -134522283 + LTR16A LTR ERVL 16 450 0 237 209 0 0 chr11 14261802 14261845 -134521627 + CT-rich Low_complexity Low_complexity 2 44 0 1511 193 10 26 chr11 14262537 14262848 -134520624 - AluJo SINE Alu -1 311 6 635 311 108 10 chr11 14263044 14263349 -134520123 + HAL1 LINE L1 256 590 -1917 317 216 278 12 chr11 14263365 14263442 -134520030 + HAL1 LINE L1 1045 1100 -1407 2417 72 0 34 chr11 14263442 14263762 -134519710 + AluSc SINE Alu 1 309 0 317 216 278 12 chr11 14263762 14263846 -134519626 + HAL1 LINE L1 1100 1249 -1258 1424 186 29 25 chr11 14263849 14264124 -134519348 + AluJo SINE Alu 1 276 -36 655 224 29 0 chr11 14264146 14264316 -134519156 + L1M4 LINE L1 4865 5039 -1107 2285 224 138 51 chr11 14264411 14265508 -134517964 + HAL1 LINE L1 1303 2494 -13 562 185 141 0 chr11 14266093 14266228 -134517244 + MIR SINE MIR 96 249 -13 5116 190 53 21 chr11 14266272 14267827 -134515645 + L1MD2 LINE L1 4747 6347 -12 1913 158 7 10 chr11 14267859 14268163 -134515309 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr11 14269074 14269097 -134514375 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr11 14270197 14270226 -134513246 + AT_rich Low_complexity Low_complexity 1 29 0 2493 74 0 0 chr11 14271265 14271564 -134511908 - AluY SINE Alu -12 299 1 654 248 0 14 chr11 14272331 14272476 -134510996 + MER63A DNA MER1_type 45 187 -23 359 281 8 31 chr11 14272477 14272605 -134510867 + (CATATA)n Simple_repeat Simple_repeat 3 127 0 350 281 34 0 chr11 14272624 14272713 -134510759 + MIR SINE MIR 26 117 -145 207 275 147 0 chr11 14272794 14272903 -134510569 + MIR SINE MIR 138 262 0 212 0 36 0 chr11 14272938 14272966 -134510506 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr11 14273874 14273895 -134509577 + AT_rich Low_complexity Low_complexity 1 21 0 2071 129 0 0 chr11 14274248 14274527 -134508945 + AluSg SINE Alu 1 279 -31 222 219 0 0 chr11 14274819 14274860 -134508612 + GA-rich Low_complexity Low_complexity 3 43 0 216 269 19 0 chr11 14274873 14274925 -134508547 + MIR SINE MIR 31 83 -125 1237 134 21 198 chr11 14274966 14275330 -134508142 + Charlie4a DNA MER1_type 17 275 -1686 2414 91 26 3 chr11 14275330 14275672 -134507800 + L1PA10 LINE L1 5814 6163 -5 1237 134 21 198 chr11 14275672 14275793 -134507679 + Charlie4a DNA MER1_type 275 416 -92 499 206 131 6 chr11 14275797 14275957 -134507515 - L1MB7 LINE L1 -10 6174 5995 2928 157 21 28 chr11 14275970 14276650 -134506822 - L1MB7 LINE L1 -351 5833 5160 1846 139 35 14 chr11 14276650 14276938 -134506534 + AluJb SINE Alu 1 294 -18 2928 157 21 28 chr11 14276938 14277021 -134506451 - L1MB7 LINE L1 -1024 5160 5078 453 132 28 66 chr11 14277022 14277099 -134506373 + L1MB8 LINE L1 6071 6144 -34 1062 181 34 10 chr11 14277099 14277304 -134506168 - MER6B DNA MER2_type 0 210 1 453 132 28 66 chr11 14277304 14277332 -134506140 + L1MB8 LINE L1 6144 6172 -6 622 153 15 23 chr11 14277465 14277596 -134505876 + L1MB7 LINE L1 6054 6183 -1 696 218 0 0 chr11 14277643 14277767 -134505705 - FLAM_A SINE Alu -9 124 1 438 211 0 70 chr11 14277817 14277853 -134505619 + Charlie4a DNA MER1_type 403 440 -1521 1771 131 91 0 chr11 14277853 14278128 -134505344 + AluSx SINE Alu 1 300 -12 438 211 0 70 chr11 14278128 14278205 -134505267 + Charlie4a DNA MER1_type 440 508 0 269 275 50 12 chr11 14278227 14278307 -134505165 + MIR3 SINE MIR 104 186 -22 1659 47 0 19 chr11 14279878 14280091 -134503381 - L1PA5 LINE L1 0 6154 5946 2523 55 0 13 chr11 14281109 14281420 -134502052 - AluY SINE Alu -4 307 1 23 0 0 0 chr11 14281653 14281676 -134501796 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 14282882 14282905 -134500567 + AT_rich Low_complexity Low_complexity 1 23 0 2178 131 0 0 chr11 14282975 14283272 -134500200 + AluSx SINE Alu 1 297 -15 35 24 0 0 chr11 14283328 14283370 -134500102 + AT_rich Low_complexity Low_complexity 1 42 0 388 307 218 14 chr11 14283740 14284033 -134499439 + L2 LINE L2 2274 2626 -688 21 36 0 0 chr11 14284186 14284214 -134499258 + AT_rich Low_complexity Low_complexity 1 28 0 277 266 0 51 chr11 14284259 14284338 -134499134 + L2 LINE L2 3239 3313 0 2291 79 3 30 chr11 14284475 14284778 -134498694 + AluSx SINE Alu 1 295 -17 201 269 19 0 chr11 14286174 14286226 -134497246 - L2 LINE L2 -213 3059 3007 1625 177 7 45 chr11 14286426 14286736 -134496736 - AluJo SINE Alu -14 298 1 1845 125 63 21 chr11 14286834 14287121 -134496351 + AluJo SINE Alu 1 299 -13 407 218 0 0 chr11 14287417 14287495 -134495977 - MER116 DNA Mariner -2 78 1 373 274 134 26 chr11 14287621 14287829 -134495643 + MIR SINE MIR 3 232 -30 305 282 77 0 chr11 14288411 14288528 -134494944 - L2 LINE L2 -20 3293 3168 1988 150 7 0 chr11 14288991 14289285 -134494187 - AluSx SINE Alu -15 297 2 1666 106 160 4 chr11 14289538 14289794 -134493678 - AluSx SINE Alu -16 296 1 218 200 20 0 chr11 14289808 14289858 -134493614 - MIR SINE MIR -139 123 73 231 199 0 15 chr11 14290172 14290236 -134493236 + MIR SINE MIR 89 148 -65 386 268 146 18 chr11 14291247 14291411 -134492061 - MIR SINE MIR -57 205 21 2352 82 0 7 chr11 14291591 14291884 -134491588 - AluSx SINE Alu -19 293 3 303 326 133 39 chr11 14292127 14292587 -134490885 + L2 LINE L2 531 1033 -2281 207 0 0 0 chr11 14292724 14292747 -134490725 + (T)n Simple_repeat Simple_repeat 1 23 0 2241 94 13 3 chr11 14293258 14293556 -134489916 + AluSq SINE Alu 1 301 -12 665 312 18 113 chr11 14293793 14293946 -134489526 - L2 LINE L2 -4 3268 3102 2654 125 18 66 chr11 14293946 14294178 -134489294 - Tigger2a DNA MER2_type -2274 434 233 2233 129 0 6 chr11 14294178 14294489 -134488983 + AluSx SINE Alu 1 309 -3 2654 125 18 66 chr11 14294489 14294711 -134488761 - Tigger2a DNA MER2_type -2475 233 2 665 312 18 113 chr11 14294711 14294948 -134488524 - L2 LINE L2 -170 3102 2915 236 282 114 30 chr11 14295048 14295179 -134488293 - L2 LINE L2 -562 2752 2611 2426 98 0 0 chr11 14295566 14295871 -134487601 + AluSx SINE Alu 1 305 -7 258 214 0 136 chr11 14296141 14296244 -134487228 + HAL1 LINE L1 1353 1441 -1066 1628 149 50 8 chr11 14296275 14296574 -134486898 + AluJo SINE Alu 19 328 0 791 226 65 0 chr11 14296574 14296773 -134486699 + HAL1 LINE L1 1430 1641 -866 236 339 39 44 chr11 14296794 14296809 -134486663 + HAL1 LINE L1 1756 1770 -737 198 0 0 0 chr11 14296809 14296831 -134486641 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 236 339 39 44 chr11 14296831 14296995 -134486477 + HAL1 LINE L1 1770 1934 -573 * 274 284 37 18 chr11 14296987 14297096 -134486376 + HAL1 LINE L1 1690 1800 -707 2594 127 3 0 chr11 14347942 14348305 -134435167 - THE1B LTR MaLR 0 364 1 628 78 0 0 chr11 14348305 14348395 -134435077 - THE1B-int LTR MaLR 0 1580 1491 356 30 15 164 chr11 14348496 14348563 -134434909 + LTR12 LTR ERV1 357 714 0 742 193 27 13 chr11 14348566 14348716 -134434756 + HERV9 LTR ERV1 2 153 -8246 * 10068 92 4 5 chr11 14348715 14350069 -134433403 + HERV9 LTR ERV1 1283 2635 -5764 390 69 0 0 chr11 14350674 14350732 -134432740 + (TA)n Simple_repeat Simple_repeat 2 59 0 1993 145 0 10 chr11 14350746 14351042 -134432430 - AluSx SINE Alu -19 293 1 2248 129 0 0 chr11 14351052 14351354 -134432118 - AluSg SINE Alu -8 302 1 1881 160 3 22 chr11 14351541 14351859 -134431613 - AluJb SINE Alu 0 312 1 377 125 14 28 chr11 14351863 14351935 -134431537 + HsTC2 DNA Tc2 1823 1893 -5 712 185 8 0 chr11 14352303 14352422 -134431050 + FLAM_A SINE Alu 2 121 -12 811 159 130 0 chr11 14352445 14352633 -134430839 + L1MC4a LINE L1 5218 5426 -744 2247 116 0 0 chr11 14352760 14353053 -134430419 + AluSg SINE Alu 1 293 -17 2436 97 0 0 chr11 14353060 14353370 -134430102 + AluSx SINE Alu 1 310 -2 1415 314 63 21 chr11 14353389 14354183 -134429289 + L1MEc LINE L1 136 962 -5434 496 191 52 43 chr11 14354184 14354299 -134429173 - MER105 DNA DNA 0 204 89 314 230 7 53 chr11 14354403 14354555 -134428917 + L1MEc LINE L1 966 1110 -5286 259 188 0 21 chr11 14354565 14354613 -134428859 + Alu SINE Alu 1 47 -256 1112 195 15 10 chr11 14354727 14354780 -134428692 + AluJb SINE Alu 85 136 -176 2091 112 14 7 chr11 14354780 14355075 -134428397 + AluSx SINE Alu 3 299 -13 1112 195 15 10 chr11 14355075 14355226 -134428246 + AluJb SINE Alu 136 290 -22 272 236 0 0 chr11 14356008 14356063 -134427409 + MLT1K LTR MaLR 532 586 -2 217 186 118 60 chr11 14356536 14356721 -134426751 + MER5C DNA MER1_type 67 320 -4 229 302 93 54 chr11 14357139 14357417 -134426055 + L2 LINE L2 2015 2303 -1011 916 98 28 28 chr11 14357951 14358094 -134425378 - AluSg/x SINE Alu -25 285 143 334 219 167 0 chr11 14358094 14358208 -134425264 - MIR SINE MIR -122 140 8 21 0 0 0 chr11 14358293 14358314 -134425158 + AT_rich Low_complexity Low_complexity 1 21 0 498 256 84 73 chr11 14358412 14358685 -134424787 + L1MC4a LINE L1 5600 5875 -1933 335 279 50 50 chr11 14358897 14359058 -134424414 + MIR3 SINE MIR 38 198 -10 508 276 114 5 chr11 14359377 14359587 -134423885 + MIR SINE MIR 17 249 -13 2147 276 121 11 chr11 14359895 14361121 -134422351 - L2 LINE L2 -3 3310 1947 635 158 117 0 chr11 14361220 14361340 -134422132 + MER94 DNA DNA 1 134 0 870 184 40 17 chr11 14361619 14361793 -134421679 + AluJo SINE Alu 1 178 -134 434 264 87 14 chr11 14362133 14362341 -134421131 + L2 LINE L2 2087 2309 -1005 782 253 67 22 chr11 14362343 14362655 -134420817 + L2 LINE L2 2452 2777 -537 201 167 0 0 chr11 14362706 14362742 -134420730 + (TTAA)n Simple_repeat Simple_repeat 2 37 0 2246 120 13 0 chr11 14362903 14363212 -134420260 - AluSq SINE Alu 0 313 1 1792 243 122 23 chr11 14364404 14364550 -134418922 - L2 LINE L2 -2 3311 3181 1740 179 6 13 chr11 14364550 14364863 -134418609 + AluJo SINE Alu 1 311 -1 1792 243 122 23 chr11 14364863 14365785 -134417687 - L2 LINE L2 -132 3181 2156 2736 175 56 67 chr11 14365930 14366700 -134416772 - L1MB8 LINE L1 -290 5888 5111 2067 144 0 3 chr11 14366700 14366998 -134416474 - AluSx SINE Alu -15 297 1 2736 175 56 67 chr11 14366998 14367055 -134416417 - L1MB8 LINE L1 -1067 5111 5055 2208 125 3 0 chr11 14367055 14367366 -134416106 - AluSx SINE Alu 0 312 1 2736 175 56 67 chr11 14367366 14367461 -134416011 - L1MB8 LINE L1 -1123 5055 4985 2195 118 0 0 chr11 14367771 14368059 -134415413 + AluSx SINE Alu 1 288 -24 1211 219 75 14 chr11 14368630 14368752 -134414720 + AluJo SINE Alu 1 114 -198 429 20 0 0 chr11 14368752 14368802 -134414670 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1211 219 75 14 chr11 14368802 14368958 -134414514 + AluJo SINE Alu 114 296 -16 2290 99 0 0 chr11 14368961 14369266 -134414206 + AluSg SINE Alu 1 305 0 198 0 0 0 chr11 14369579 14369601 -134413871 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2096 150 0 0 chr11 14369680 14369980 -134413492 + AluJb SINE Alu 2 301 -11 26 0 0 0 chr11 14370000 14370026 -134413446 + AT_rich Low_complexity Low_complexity 1 26 0 1082 132 6 12 chr11 14370162 14370329 -134413143 + AluY SINE Alu 1 166 -145 251 188 0 16 chr11 14371165 14371229 -134412243 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 531 327 41 5 chr11 14371321 14371541 -134411931 - MIR SINE MIR -15 247 20 188 251 149 59 chr11 14371803 14372058 -134411414 + L2 LINE L2 382 659 -2655 378 291 14 28 chr11 14372509 14372650 -134410822 - MER5A DNA MER1_type -34 155 17 1045 230 14 10 chr11 14372803 14373012 -134410460 + MER63A DNA MER1_type 1 210 0 2197 126 3 0 chr11 14373168 14373462 -134410010 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr11 14373552 14373587 -134409885 + AT_rich Low_complexity Low_complexity 1 35 0 347 259 43 65 chr11 14374170 14374309 -134409163 - L2 LINE L2 0 3272 3137 1992 123 3 23 chr11 14374610 14374965 -134408507 + AluSq SINE Alu 1 313 0 1850 164 3 10 chr11 14374966 14375271 -134408201 + AluJo SINE Alu 1 303 -9 1964 131 13 29 chr11 14375274 14375580 -134407892 + AluSx SINE Alu 1 301 -11 207 202 36 24 chr11 14375594 14375678 -134407794 + GA-rich Low_complexity Low_complexity 5 89 0 589 249 83 76 chr11 14377064 14377341 -134406131 + MLT1L LTR MaLR 46 324 -291 652 233 109 101 chr11 14377368 14377554 -134405918 + MLT1L LTR MaLR 252 435 -180 1825 74 0 0 chr11 14377554 14377784 -134405688 - L1PA8 LINE L1 -4 6168 5939 652 233 109 101 chr11 14377784 14377797 -134405675 + MLT1L LTR MaLR 435 446 -169 2456 89 3 0 chr11 14377797 14378101 -134405371 - AluSp SINE Alu -8 305 1 652 233 109 101 chr11 14378101 14378248 -134405224 + MLT1L LTR MaLR 446 602 -13 180 0 0 0 chr11 14378260 14378280 -134405192 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1755 146 52 4 chr11 14378284 14378552 -134404920 - AluJb SINE Alu -31 281 1 180 233 75 83 chr11 14378577 14378697 -134404775 - L2 LINE L2 -97 3216 3098 643 241 0 0 chr11 14378876 14379009 -134404463 + FLAM_C SINE Alu 1 133 0 492 276 13 39 chr11 14379875 14380031 -134403441 + LTR16C LTR ERVL 340 491 0 308 309 12 0 chr11 14380057 14380141 -134403331 + HAL1 LINE L1 237 321 -2186 2491 208 76 6 chr11 14380271 14380899 -134402573 - L1MC4 LINE L1 -6 8036 7282 290 226 9 49 chr11 14380906 14381014 -134402458 - L1MC4a LINE L1 -562 7291 7147 254 161 36 0 chr11 14380989 14381045 -134402427 - L1MC4 LINE L1 -954 7088 7031 * 312 140 0 18 chr11 14381045 14381102 -134402370 - MLT2B1 LTR ERVL -1 519 464 24 67 0 0 chr11 14381109 14381154 -134402318 + AT_rich Low_complexity Low_complexity 1 45 0 1050 171 0 0 chr11 14381208 14381378 -134402094 - AluJb SINE Alu -9 303 134 2117 132 3 0 chr11 14381378 14381674 -134401798 - AluSx SINE Alu -15 297 1 2288 104 0 10 chr11 14381682 14381989 -134401483 - AluSq SINE Alu -9 304 1 1572 181 84 36 chr11 14381996 14382380 -134401092 - MLT2B1 LTR ERVL -55 359 1 1466 173 0 12 chr11 14382380 14382623 -134400849 - L1MC4 LINE L1 -1008 7034 6795 932 148 0 39 chr11 14382629 14382821 -134400651 - AluSc SINE Alu 0 316 131 411 73 0 0 chr11 14382821 14382876 -134400596 + (TG)n Simple_repeat Simple_repeat 2 56 0 671 116 5 63 chr11 14382876 14383066 -134400406 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chr11 14383083 14383104 -134400368 + AT_rich Low_complexity Low_complexity 1 21 0 766 107 0 0 chr11 14383104 14383207 -134400265 - AluJb SINE Alu -187 125 23 513 288 6 8 chr11 14383215 14383392 -134400080 - L1MC4a LINE L1 -1040 6745 6570 342 62 0 21 chr11 14383403 14383451 -134400021 - MER50 LTR ERV1 -189 545 499 394 243 111 7 chr11 14383451 14383595 -134399877 - L1MC4 LINE L1 -1379 6663 6505 2531 79 0 0 chr11 14383669 14383972 -134399500 - AluY SINE Alu -8 303 1 26 0 0 0 chr11 14384108 14384134 -134399338 + AT_rich Low_complexity Low_complexity 1 26 0 2130 147 0 0 chr11 14384154 14384454 -134399018 - AluJb SINE Alu -11 301 2 305 282 201 7 chr11 14385240 14385389 -134398083 + MIR SINE MIR 34 211 -51 229 288 125 61 chr11 14385449 14385713 -134397759 - L2 LINE L2 -423 2891 2611 378 179 98 18 chr11 14385983 14386095 -134397377 + L1ME4a LINE L1 5998 6118 -3 22 35 0 0 chr11 14386095 14386124 -134397348 + AT_rich Low_complexity Low_complexity 1 29 0 417 252 62 20 chr11 14386822 14386970 -134396502 - MIR SINE MIR -65 143 38 1638 195 149 16 chr11 14387021 14387390 -134396082 - MER47B DNA MER2_type 0 418 1 1708 199 151 23 chr11 14387453 14387891 -134395581 - MLT1D LTR MaLR -9 496 3 670 213 8 0 chr11 14387897 14388057 -134395415 - FLAM_A SINE Alu 0 161 1 727 218 72 21 chr11 14388370 14388563 -134394909 - MIR SINE MIR -12 250 48 1169 269 76 8 chr11 14389097 14389494 -134393978 - LTR16A LTR ERVL -8 442 19 234 185 19 176 chr11 14389934 14390042 -134393430 - L2 LINE L2 -3 3310 3220 239 273 102 11 chr11 14390361 14390449 -134393023 + L2 LINE L2 3160 3255 -17 255 321 21 71 chr11 14390450 14390590 -134392882 - MIR SINE MIR -67 141 9 471 82 0 0 chr11 14390665 14390738 -134392734 + (TG)n Simple_repeat Simple_repeat 2 74 0 254 194 15 0 chr11 14391477 14391544 -134391928 + CT-rich Low_complexity Low_complexity 1 68 0 1831 137 0 78 chr11 14391554 14391861 -134391611 - AluJo SINE Alu -29 283 1 2362 106 0 0 chr11 14391870 14392181 -134391291 - AluY SINE Alu 0 311 1 330 270 111 75 chr11 14392192 14392499 -134390973 - L1MC4a LINE L1 -1643 6165 5848 216 86 0 0 chr11 14392721 14392756 -134390716 + (TG)n Simple_repeat Simple_repeat 1 35 0 631 253 71 50 chr11 14392883 14393164 -134390308 + L2 LINE L2 3027 3313 0 438 302 112 16 chr11 14393341 14393599 -134389873 + L2 LINE L2 1575 1857 -1457 789 245 343 17 chr11 14393728 14394250 -134389222 + L2 LINE L2 2086 2777 -537 201 167 0 0 chr11 14394301 14394337 -134389135 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 2094 137 13 0 chr11 14394501 14394807 -134388665 - AluSq SINE Alu -3 310 1 1907 116 4 14 chr11 14394965 14395241 -134388231 - AluSq SINE Alu -40 273 1 204 328 39 70 chr11 14395397 14395489 -134387983 - L2 LINE L2 -4 3309 3221 1791 172 7 3 chr11 14395489 14395797 -134387675 - AluJo SINE Alu -3 309 1 204 328 39 70 chr11 14395797 14395832 -134387640 - L2 LINE L2 -92 3221 3186 1447 239 74 29 chr11 14396528 14396975 -134386497 + MLT1C LTR MaLR 1 467 0 2218 94 23 0 chr11 14397760 14398059 -134385413 - AluSx SINE Alu -6 306 1 3567 157 42 18 chr11 14398195 14398820 -134384652 + L1MC3 LINE L1 7130 7769 -16 1651 191 3 10 chr11 14399534 14399822 -134383650 + AluJo SINE Alu 1 286 -26 197 242 95 63 chr11 14399932 14400027 -134383445 - L2 LINE L2 -56 3257 3160 278 227 11 57 chr11 14400045 14400133 -134383339 - HsTC2 DNA Tc2 -1812 86 3 2419 91 0 0 chr11 14400374 14400671 -134382801 + AluSq SINE Alu 1 297 -16 806 247 0 0 chr11 14400861 14401023 -134382449 + FRAM SINE Alu 1 162 -4 1939 139 0 14 chr11 14401293 14401608 -134381864 + AluSx SINE Alu 1 311 0 725 224 139 15 chr11 14401989 14402190 -134381282 - MIR SINE MIR -23 239 14 2882 16 0 0 chr11 14402422 14402734 -134380738 - AluYb8 SINE Alu -6 312 1 2289 88 7 0 chr11 14403975 14404269 -134379203 + AluSx SINE Alu 1 296 -16 1794 153 3 41 chr11 14405227 14405541 -134377931 + AluJb SINE Alu 2 303 -9 918 236 70 87 chr11 14406137 14406242 -134377230 + L1ME1 LINE L1 3342 3447 -2699 1709 178 0 36 chr11 14406242 14406545 -134376927 + AluJb SINE Alu 1 292 -20 918 236 70 87 chr11 14406545 14407063 -134376409 + L1ME1 LINE L1 3447 3955 -2191 350 266 151 85 chr11 14407064 14407666 -134375806 + L1ME1 LINE L1 4012 4653 -1493 390 215 93 19 chr11 14407696 14407803 -134375669 + L2 LINE L2 3195 3309 -4 244 253 70 48 chr11 14407851 14408037 -134375435 + L1ME1 LINE L1 4767 4956 -1190 249 306 97 37 chr11 14408233 14408367 -134375105 + MIR SINE MIR 40 181 -81 2305 52 42 0 chr11 14408388 14408676 -134374796 - AluY SINE Alu -11 300 1 22 0 0 0 chr11 14409462 14409484 -134373988 + AT_rich Low_complexity Low_complexity 1 22 0 2790 13 0 3 chr11 14409856 14410163 -134373309 + AluYa5 SINE Alu 1 306 -5 428 209 19 0 chr11 14411290 14411395 -134372077 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 2093 119 3 14 chr11 14411397 14411691 -134371781 - AluSq SINE Alu -22 291 1 528 222 93 20 chr11 14411710 14411890 -134371582 + MER69 DNA AcHobo 1 2526 0 27 0 0 0 chr11 14411994 14412021 -134371451 + AT_rich Low_complexity Low_complexity 1 27 0 1594 202 0 28 chr11 14412065 14412382 -134371090 + AluJo SINE Alu 1 308 -4 1258 136 17 15 chr11 14412567 14412802 -134370670 + AluJb SINE Alu 1 297 -15 832 219 30 0 chr11 14413189 14413358 -134370114 - FRAM SINE Alu -2 174 1 842 153 15 8 chr11 14413836 14413967 -134369505 + FLAM_A SINE Alu 2 133 0 2144 214 75 11 chr11 14414028 14414630 -134368842 + L1ME1 LINE L1 5192 5830 -334 1082 123 0 7 chr11 14414630 14414784 -134368688 + AluJb SINE Alu 135 287 -25 541 199 15 23 chr11 14414791 14415050 -134368422 + L1ME1 LINE L1 5808 6103 -63 351 308 176 33 chr11 14415371 14415673 -134367799 - L1ME4a LINE L1 -237 5884 5540 368 250 50 0 chr11 14415701 14415821 -134367651 - L1ME4a LINE L1 0 6121 5996 1494 146 73 11 chr11 14415932 14416207 -134367265 - AluJb SINE Alu -20 292 1 239 294 81 38 chr11 14416441 14416601 -134366871 - L1ME4a LINE L1 -570 5551 5385 282 56 0 0 chr11 14416802 14416838 -134366634 + (CA)n Simple_repeat Simple_repeat 1 36 0 240 293 196 36 chr11 14417024 14417713 -134365759 + L2 LINE L2 1562 2360 -954 5515 205 149 17 chr11 14417880 14419369 -134364103 + L1MDa LINE L1 19 1983 -4557 3463 146 91 54 chr11 14419369 14420049 -134363423 + MER44D DNA MER2_type 1 705 0 5515 205 149 17 chr11 14420049 14420492 -134362980 + L1MDa LINE L1 1983 2366 -4174 498 209 98 52 chr11 14420493 14420585 -134362887 - MIR SINE MIR -89 173 70 1883 159 31 25 chr11 14420585 14420944 -134362528 - MER46B DNA MER2_type 0 236 1 498 209 98 52 chr11 14420944 14421004 -134362468 - MIR SINE MIR -192 70 14 1980 191 79 23 chr11 14421182 14421437 -134362035 + LTR54 LTR ERV1 1 240 -270 852 129 15 23 chr11 14421437 14421569 -134361903 + FLAM_C SINE Alu 3 133 0 1980 191 79 23 chr11 14421569 14421796 -134361676 + LTR54 LTR ERV1 240 510 0 444 233 159 41 chr11 14421796 14422109 -134361363 + Charlie4a DNA MER1_type 90 439 -69 700 139 0 0 chr11 14422109 14422210 -134361262 + AluJ/FLAM SINE Alu 2 102 -210 1202 197 34 11 chr11 14422318 14422723 -134360749 - L1M3 LINE L1 -641 5539 5126 1686 168 42 3 chr11 14422735 14423021 -134360451 - AluJo SINE Alu -15 297 1 2333 90 0 0 chr11 14423437 14423736 -134359736 + AluSx SINE Alu 1 299 -13 188 254 17 51 chr11 14423919 14423978 -134359494 + MER5A DNA MER1_type 47 103 -86 700 211 133 6 chr11 14424632 14424798 -134358674 - MER5A DNA MER1_type -1 188 2 758 269 91 123 chr11 14424854 14424904 -134358568 - MLT1K LTR MaLR -6 582 532 1678 144 0 0 chr11 14424904 14425140 -134358332 + MER46A DNA MER2_type 1 236 0 758 269 91 123 chr11 14425140 14425337 -134358135 - MLT1K LTR MaLR -56 532 330 875 183 146 0 chr11 14425337 14425501 -134357971 - MER5A DNA MER1_type 0 189 2 758 269 91 123 chr11 14425501 14425844 -134357628 - MLT1K LTR MaLR -258 330 10 239 323 44 57 chr11 14425985 14426143 -134357329 + MIR SINE MIR 57 212 -50 2105 137 0 0 chr11 14426175 14426468 -134357004 - AluSx SINE Alu -19 293 1 226 290 86 11 chr11 14426548 14426641 -134356831 + L1MC4a LINE L1 5440 5539 -2269 702 243 143 68 chr11 14426705 14427075 -134356397 + LTR16C LTR ERVL 94 491 0 1217 250 62 19 chr11 14427094 14427462 -134356010 + L1MC4a LINE L1 5579 5962 -1846 1349 90 37 0 chr11 14427509 14427697 -134355775 - AluSq SINE Alu -5 308 114 2500 81 0 0 chr11 14427770 14428078 -134355394 - AluY SINE Alu -3 308 1 341 198 167 10 chr11 14428491 14428587 -134354885 - MIR SINE MIR -65 143 33 333 191 0 0 chr11 14428936 14428999 -134354473 + L2 LINE L2 3210 3272 0 384 268 309 6 chr11 14429333 14429501 -134353971 + MIR SINE MIR 32 250 -12 283 205 0 72 chr11 14430087 14430170 -134353302 + (TCTCTG)n Simple_repeat Simple_repeat 4 80 0 234 196 22 0 chr11 14430528 14430574 -134352898 + Alu SINE Alu 147 193 -110 535 108 0 137 chr11 14430580 14430663 -134352809 + FLAM_A SINE Alu 40 108 -203 2495 80 0 0 chr11 14430663 14430963 -134352509 - AluSq SINE Alu -13 300 1 535 108 0 137 chr11 14430963 14430981 -134352491 + FLAM_A SINE Alu 108 127 -184 27 0 0 0 chr11 14431039 14431066 -134352406 + AT_rich Low_complexity Low_complexity 1 27 0 396 224 224 46 chr11 14431131 14431368 -134352104 + L1MC/D LINE L1 5378 5656 -465 279 253 59 106 chr11 14432123 14432396 -134351076 + MLT1J1 LTR MaLR 9 307 -204 227 247 71 0 chr11 14432432 14432517 -134350955 + MLT1L LTR MaLR 503 593 -22 246 192 0 0 chr11 14432571 14432623 -134350849 + (TA)n Simple_repeat Simple_repeat 2 53 0 195 42 0 0 chr11 14432623 14432647 -134350825 + (GA)n Simple_repeat Simple_repeat 2 25 0 349 257 12 15 chr11 14432648 14432767 -134350705 + L1MC/D LINE L1 5696 5813 -308 1851 150 25 0 chr11 14433194 14433480 -134349992 + AluJo SINE Alu 1 293 -19 883 149 0 22 chr11 14433497 14433631 -134349841 + AluJo SINE Alu 6 136 -176 2276 95 0 0 chr11 14433631 14433916 -134349556 + AluSx SINE Alu 1 313 0 192 36 36 0 chr11 14433916 14433944 -134349528 + (TAAAA)n Simple_repeat Simple_repeat 2 175 0 359 134 0 85 chr11 14433947 14434029 -134349443 + AluJ/FRAM SINE Alu 228 302 0 811 285 31 76 chr11 14434567 14434804 -134348668 + L1ME4a LINE L1 5593 5796 -325 2188 119 0 0 chr11 14434804 14435106 -134348366 + AluSx SINE Alu 1 302 -10 811 285 31 76 chr11 14435106 14435381 -134348091 + L1ME4a LINE L1 5796 6082 -39 24 0 0 0 chr11 14435445 14435469 -134348003 + AT_rich Low_complexity Low_complexity 1 24 0 302 299 167 14 chr11 14436215 14436359 -134347113 + MIR SINE MIR 35 200 -62 373 253 73 7 chr11 14436786 14436936 -134346536 + MER113 DNA MER1_type? 6 165 -356 2052 117 78 33 chr11 14437042 14437401 -134346071 - THE1C LTR MaLR 0 375 1 290 274 108 32 chr11 14437498 14437655 -134345817 - MIR3 SINE MIR -10 198 30 232 250 19 0 chr11 14438203 14438255 -134345217 + MER91 DNA MER1_type 135 187 -3 412 207 135 9 chr11 14438580 14438691 -134344781 + MIR3 SINE MIR 11 135 -73 2243 112 0 0 chr11 14438735 14439031 -134344441 + AluSx SINE Alu 1 296 -16 208 228 88 0 chr11 14439173 14439230 -134344242 - MIR SINE MIR -108 100 39 629 296 109 39 chr11 14439430 14439649 -134343823 - L2 LINE L2 -627 2687 2436 2628 141 23 28 chr11 14439649 14440076 -134343396 + MER61B LTR ERV1 1 425 0 629 296 109 39 chr11 14440076 14440187 -134343285 - L2 LINE L2 -878 2436 2334 406 326 39 33 chr11 14440364 14440545 -134342927 + MIR SINE MIR 5 186 -76 2371 132 19 16 chr11 14440643 14441007 -134342465 + MLT1A1 LTR MaLR 1 365 0 533 271 169 4 chr11 14441072 14441297 -134342175 + MIR SINE MIR 1 262 0 198 311 0 0 chr11 14441306 14441351 -134342121 + L2 LINE L2 3217 3261 -11 899 293 87 14 chr11 14442071 14442440 -134341032 - MLT1L LTR MaLR 0 615 220 200 290 58 14 chr11 14442488 14442557 -134340915 - L2 LINE L2 -534 2780 2709 741 192 15 8 chr11 14442569 14442699 -134340773 - FLAM_C SINE Alu -12 131 1 662 305 283 19 chr11 14442701 14443543 -134339929 - L2 LINE L2 -601 2713 1650 2192 114 3 0 chr11 14444014 14444304 -134339168 - AluSx SINE Alu -19 293 3 280 320 0 0 chr11 14446376 14446451 -134337021 + L3 LINE CR1 1501 1575 -2 295 293 95 17 chr11 14446529 14446645 -134336827 + MIR SINE MIR 64 188 -74 852 161 13 13 chr11 14446870 14447025 -134336447 - L1MB3 LINE L1 -13 6170 6016 2334 94 7 3 chr11 14447187 14447494 -134335978 + AluSg SINE Alu 3 310 0 733 274 25 59 chr11 14447825 14448062 -134335410 + MIR SINE MIR 1 228 -34 23 0 0 0 chr11 14448169 14448192 -134335280 + AT_rich Low_complexity Low_complexity 1 23 0 393 275 76 55 chr11 14448765 14449001 -134334471 - L2 LINE L2 -203 3069 2829 5122 241 78 61 chr11 14449489 14450591 -134332881 - L1MDa LINE L1 -1809 4406 3324 838 158 0 34 chr11 14450591 14450737 -134332735 - FLAM_C SINE Alu -2 141 1 5122 241 78 61 chr11 14450737 14452006 -134331466 - L1MDa LINE L1 -2891 3324 2078 829 199 0 0 chr11 14452006 14452137 -134331335 + FLAM_A SINE Alu 1 131 -2 5122 241 78 61 chr11 14452137 14453332 -134330140 - L1MDa LINE L1 -4137 2078 469 2321 115 0 0 chr11 14454328 14454640 -134328832 + AluSx SINE Alu 1 312 0 1659 193 7 10 chr11 14454712 14455017 -134328455 - AluJb SINE Alu -8 304 1 224 232 116 71 chr11 14455671 14455783 -134327689 - L2 LINE L2 0 3313 3197 234 260 233 0 chr11 14456383 14456456 -134327016 + L2 LINE L2 3223 3312 -1 2071 106 7 23 chr11 14456907 14457209 -134326263 + AluSg SINE Alu 1 297 -13 1693 261 217 20 chr11 14457308 14458100 -134325372 - L2 LINE L2 -1177 2137 1190 2322 115 49 14 chr11 14458549 14458898 -134324574 - MER46B DNA MER2_type 0 236 1 2398 74 0 3 chr11 14459563 14459859 -134323613 + AluY SINE Alu 1 295 -16 342 0 0 0 chr11 14459862 14459900 -134323572 + (TA)n Simple_repeat Simple_repeat 2 39 0 2293 105 76 15 chr11 14460183 14460526 -134322946 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr11 14460681 14460703 -134322769 + AT_rich Low_complexity Low_complexity 1 22 0 1600 170 16 35 chr11 14462629 14462941 -134320531 + AluJo SINE Alu 1 306 -6 24 0 0 0 chr11 14462944 14462968 -134320504 + AT_rich Low_complexity Low_complexity 1 24 0 807 168 0 15 chr11 14463650 14463781 -134319691 + AluJb SINE Alu 167 295 -17 1556 182 46 14 chr11 14464230 14464510 -134318962 + AluJo SINE Alu 1 289 -23 24 0 0 0 chr11 14464510 14464534 -134318938 + AT_rich Low_complexity Low_complexity 1 24 0 363 322 133 0 chr11 14465713 14465856 -134317616 + MIR SINE MIR 49 210 -52 518 214 32 40 chr11 14466064 14466190 -134317282 + L1ME3 LINE L1 6028 6152 -10 1181 107 66 66 chr11 14467121 14467317 -134316155 + AluJb SINE Alu 87 282 -30 216 215 87 81 chr11 14468151 14468300 -134315172 + L2 LINE L2 3077 3226 -87 2207 101 7 19 chr11 14468434 14468742 -134314730 + AluSx SINE Alu 1 304 -8 402 21 0 0 chr11 14468802 14468849 -134314623 + (CA)n Simple_repeat Simple_repeat 1 47 0 316 240 40 56 chr11 14469143 14469268 -134314204 + MIR SINE MIR 21 143 -119 480 322 36 30 chr11 14469550 14469786 -134313686 + MIR SINE MIR 9 249 -13 718 194 0 8 chr11 14470193 14470317 -134313155 + FLAM_C SINE Alu 2 124 -19 1098 231 64 16 chr11 14472021 14472332 -134311140 - L2 LINE L2 -1111 2203 1878 182 200 0 0 chr11 14472354 14472389 -134311083 + MIR SINE MIR 114 148 -114 300 302 161 13 chr11 14472895 14473044 -134310428 + MIR SINE MIR 13 183 -79 310 294 149 72 chr11 14473374 14473609 -134309863 + MIR SINE MIR 10 262 0 688 280 60 36 chr11 14474708 14474881 -134308591 - MIR SINE MIR 0 262 80 2056 135 3 0 chr11 14474881 14475178 -134308294 + AluJb SINE Alu 1 298 -14 688 280 60 36 chr11 14475178 14475254 -134308218 - MIR SINE MIR -182 80 7 380 314 99 17 chr11 14475255 14475565 -134307907 + L1ME LINE L1 5445 5725 -396 267 114 0 0 chr11 14475990 14476025 -134307447 - U2 snRNA snRNA -153 35 1 423 0 0 0 chr11 14476027 14476074 -134307398 + (TG)n Simple_repeat Simple_repeat 2 48 0 236 339 94 20 chr11 14479212 14479457 -134304015 + L2 LINE L2 2128 2390 -924 2221 115 3 0 chr11 14479676 14479972 -134303500 + AluSc SINE Alu 1 297 -12 1223 180 5 9 chr11 14479986 14480203 -134303269 + AluJb SINE Alu 85 300 -12 357 191 96 0 chr11 14481732 14481826 -134301646 - MIR SINE MIR -49 213 111 1583 300 120 50 chr11 14482125 14482563 -134300909 - L2 LINE L2 -44 3228 2822 1639 160 44 7 chr11 14482563 14482838 -134300634 + AluJo SINE Alu 1 285 -27 1583 300 120 50 chr11 14482838 14483833 -134299639 - L2 LINE L2 -450 2822 1684 259 275 108 24 chr11 14485213 14485380 -134298092 - MIR SINE MIR -34 228 48 22 35 0 0 chr11 14486247 14486276 -134297196 + AT_rich Low_complexity Low_complexity 1 29 0 323 367 59 34 chr11 14486350 14486587 -134296885 - L2 LINE L2 -2 3270 3028 317 239 174 0 chr11 14487427 14487536 -134295936 - MIR SINE MIR -70 192 65 236 280 54 21 chr11 14488148 14488241 -134295231 - L2 LINE L2 -181 3091 2996 905 183 46 0 chr11 14488248 14488423 -134295049 - MER5A DNA MER1_type -6 183 1 472 263 23 69 chr11 14488761 14488978 -134294494 - MIR SINE MIR -35 227 21 233 317 141 7 chr11 14489137 14489279 -134294193 + MIR SINE MIR 38 198 -64 790 177 0 0 chr11 14489611 14489741 -134293731 + FRAM SINE Alu 40 169 -7 803 289 18 0 chr11 14490558 14490776 -134292696 + MER58A DNA MER1_type 1 222 -2 2273 125 0 0 chr11 14491402 14491707 -134291765 + AluSq SINE Alu 1 305 -8 337 250 12 12 chr11 14491786 14491870 -134291602 + MER117 DNA MER1_type 114 197 0 424 335 45 0 chr11 14492149 14492304 -134291168 + L1ME LINE L1 5533 5694 -427 748 216 126 0 chr11 14492546 14492745 -134290727 + MIR SINE MIR 26 249 -13 327 227 118 18 chr11 14496865 14496975 -134286497 + MIR SINE MIR 77 197 -65 251 246 43 0 chr11 14497260 14497329 -134286143 - MIR SINE MIR -70 192 121 283 234 64 74 chr11 14497915 14498089 -134285383 + MIR SINE MIR 19 192 -66 189 0 0 0 chr11 14498491 14498512 -134284960 + (A)n Simple_repeat Simple_repeat 1 21 0 2355 101 0 7 chr11 14499184 14499492 -134283980 + AluSq SINE Alu 1 306 -7 182 299 145 50 chr11 14499495 14499736 -134283736 - L2 LINE L2 -347 2967 2704 222 191 21 0 chr11 14500048 14500095 -134283377 - L2 LINE L2 -2 3311 3264 825 257 209 23 chr11 14500384 14500790 -134282682 - MLT1H LTR MaLR -13 536 12 187 244 0 0 chr11 14501364 14501405 -134282067 - L3 LINE CR1 -204 1373 1333 21 0 0 0 chr11 14501759 14501780 -134281692 + AT_rich Low_complexity Low_complexity 1 21 0 2226 122 87 44 chr11 14503703 14504139 -134279333 + MSTB2 LTR MaLR 1 455 -2 2320 89 0 3 chr11 14504232 14504524 -134278948 - AluSp SINE Alu -21 292 2 183 42 0 0 chr11 14506141 14506165 -134277307 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 343 302 31 0 chr11 14506854 14506950 -134276522 + MIR SINE MIR 54 152 -110 21 36 0 0 chr11 14507813 14507841 -134275631 + AT_rich Low_complexity Low_complexity 1 28 0 1719 140 0 34 chr11 14508093 14508427 -134275045 + AluJb SINE Alu 1 324 0 1763 123 36 18 chr11 14508431 14508708 -134274764 + AluJb SINE Alu 22 303 -9 2197 116 13 0 chr11 14509535 14509837 -134273635 - AluSx SINE Alu -6 306 1 1006 166 52 0 chr11 14511211 14511422 -134272050 + L1MA8 LINE L1 6070 6291 0 1691 178 0 27 chr11 14511424 14511722 -134271750 + AluJo SINE Alu 1 290 -22 24 0 0 0 chr11 14511725 14511749 -134271723 + AT_rich Low_complexity Low_complexity 1 24 0 1508 161 18 25 chr11 14512099 14512378 -134271094 + AluJo SINE Alu 11 287 -25 22 56 0 0 chr11 14512378 14512414 -134271058 + AT_rich Low_complexity Low_complexity 1 36 0 3716 194 89 109 chr11 14512791 14513512 -134269960 - L1MC4a LINE L1 -505 7303 6569 1516 66 0 0 chr11 14513512 14513695 -134269777 - AluY SINE Alu -7 304 122 2201 98 3 35 chr11 14513697 14514013 -134269459 - AluY SINE Alu -5 306 1 3716 194 89 109 chr11 14514013 14514748 -134268724 - L1MC4a LINE L1 -1240 6568 5873 2487 121 28 15 chr11 14514755 14515151 -134268321 + MSTB1 LTR MaLR 7 407 -25 1105 171 69 9 chr11 14515154 14515371 -134268101 + MER30 DNA MER1_type 1 230 0 583 228 232 13 chr11 14515400 14515624 -134267848 - L1MC4a LINE L1 -1937 5871 5599 1135 201 124 35 chr11 14515657 14515995 -134267477 + L1MC4 LINE L1 7445 7812 -230 2323 96 0 10 chr11 14515996 14516297 -134267175 + AluSq SINE Alu 1 298 -15 1380 82 0 0 chr11 14516297 14516467 -134267005 + AluSg/x SINE Alu 134 303 -9 680 176 85 7 chr11 14516474 14516627 -134266845 + L1MC4 LINE L1 7809 7973 -69 23 0 0 0 chr11 14516879 14516902 -134266570 + AT_rich Low_complexity Low_complexity 1 23 0 366 23 0 0 chr11 14517308 14517351 -134266121 + (GA)n Simple_repeat Simple_repeat 2 44 0 2140 108 3 14 chr11 14517353 14517650 -134265822 - AluSx SINE Alu -18 294 1 1662 110 15 46 chr11 14517898 14518161 -134265311 + AluSq SINE Alu 44 298 -15 205 179 0 0 chr11 14518207 14518246 -134265226 + (CA)n Simple_repeat Simple_repeat 2 40 0 2414 104 0 3 chr11 14519220 14519528 -134263944 - AluSx SINE Alu -5 307 1 401 257 62 45 chr11 14519528 14519707 -134263765 - MIR SINE MIR -10 252 71 798 194 59 5 chr11 14520558 14520744 -134262728 - MIR SINE MIR -32 230 35 384 235 8 0 chr11 14521057 14521158 -134262314 - MIR SINE MIR -40 168 64 2284 70 49 0 chr11 14521353 14521637 -134261835 - AluSg SINE Alu -12 298 1 38 103 0 0 chr11 14523169 14523305 -134260167 + GC_rich Low_complexity Low_complexity 1 136 0 22 35 0 0 chr11 14523775 14523804 -134259668 + GC_rich Low_complexity Low_complexity 1 29 0 611 99 0 0 chr11 14524343 14524424 -134259048 - AluJ/FLAM SINE Alu -230 82 2 743 239 85 11 chr11 14524529 14524717 -134258755 + MLT1H1 LTR MaLR 91 292 -263 534 236 66 22 chr11 14524760 14524943 -134258529 + MLT1F LTR MaLR 269 450 -92 1441 168 98 7 chr11 14524955 14525191 -134258281 - AluJo SINE Alu -13 299 33 1784 148 31 3 chr11 14525191 14525482 -134257990 + AluSx SINE Alu 1 299 -13 1441 168 98 7 chr11 14525482 14525519 -134257953 - AluJo SINE Alu -279 33 1 1638 106 38 72 chr11 14525566 14525859 -134257613 + AluSx SINE Alu 12 294 -18 251 162 0 0 chr11 14525860 14525897 -134257575 - Alu SINE Alu -265 37 1 853 172 0 6 chr11 14525941 14526085 -134257387 + AluSg/x SINE Alu 144 288 -24 3614 174 56 10 chr11 14526085 14526796 -134256676 + L1MB7 LINE L1 5428 6171 -13 853 172 0 6 chr11 14526796 14526808 -134256664 + AluSg/x SINE Alu 288 299 -13 378 192 130 41 chr11 14527187 14527333 -134256139 - MIR3 SINE MIR -15 193 35 730 276 44 56 chr11 14527511 14527830 -134255642 + MER102b DNA MER1_type 26 340 -1 22 0 0 0 chr11 14527880 14527902 -134255570 + AT_rich Low_complexity Low_complexity 1 22 0 260 264 25 15 chr11 14527911 14528015 -134255457 + MER5A DNA MER1_type 24 138 -51 2359 90 0 7 chr11 14528038 14528338 -134255134 + AluSx SINE Alu 1 298 -14 2386 90 3 0 chr11 14528340 14528640 -134254832 + AluSp SINE Alu 1 301 -12 329 319 37 6 chr11 14529209 14529372 -134254100 - MIR3 SINE MIR -7 201 34 2203 127 0 0 chr11 14529507 14529807 -134253665 - AluSx SINE Alu -12 300 1 363 233 196 0 chr11 14529807 14529940 -134253532 + L1ME4a LINE L1 5699 5857 -264 1457 198 73 40 chr11 14529951 14530078 -134253394 + MLT1A1 LTR MaLR 1 122 -243 3298 60 0 79 chr11 14530078 14530558 -134252914 - MLT2A1 LTR ERVL -2 442 1 1457 198 73 40 chr11 14530558 14530759 -134252713 + MLT1A1 LTR MaLR 122 340 -25 2486 90 3 0 chr11 14530797 14531109 -134252363 + AluSp SINE Alu 1 313 0 285 214 128 132 chr11 14531180 14531246 -134252226 - MIR SINE MIR -12 250 185 2425 94 0 0 chr11 14531246 14531545 -134251927 + AluY SINE Alu 1 299 -12 285 214 128 132 chr11 14531545 14531721 -134251751 - MIR SINE MIR -77 185 9 3335 187 31 5 chr11 14531827 14532469 -134251003 - L1MB5 LINE L1 -154 6020 5362 469 333 17 8 chr11 14732537 14732774 -134050698 - L1ME3 LINE L1 -1 6161 5923 1029 230 20 17 chr11 14732851 14733147 -134050325 - L1ME3 LINE L1 -263 5899 5603 2507 98 33 0 chr11 14733163 14733531 -134049941 - L1PA10 LINE L1 -5 6163 5784 14178 50 3 5 chr11 14733631 14735496 -134047976 - L1P LINE L1 -4284 1862 2 3535 32 2 0 chr11 14735502 14735942 -134047530 - L1PA10 LINE L1 -373 5782 5342 181 244 0 24 chr11 14735942 14735983 -134047489 - L2 LINE L2 -81 3232 3193 574 174 0 0 chr11 14736208 14736306 -134047166 + AluJ/FLAM SINE Alu 1 98 -214 242 160 20 0 chr11 14736428 14736478 -134046994 + (TA)n Simple_repeat Simple_repeat 1 51 0 1168 166 67 107 chr11 14736485 14736858 -134046614 - LTR47B LTR ERVL -85 358 1 2317 147 40 7 chr11 14736932 14737382 -134046090 + L1MB3 LINE L1 5717 6181 -2 328 283 96 35 chr11 14737435 14737633 -134045839 - L2 LINE L2 -1268 2046 1837 3414 139 72 76 chr11 14737901 14739281 -134044191 + pTR5 LTR ERV1 45 2438 0 207 0 0 0 chr11 14739365 14739388 -134044084 + (TC)n Simple_repeat Simple_repeat 2 24 0 2303 83 0 0 chr11 14739405 14739695 -134043777 - AluY SINE Alu -21 290 1 430 260 0 19 chr11 14739695 14739799 -134043673 + L2 LINE L2 3210 3311 -2 594 240 52 70 chr11 14739825 14740054 -134043418 + L2 LINE L2 3000 3224 -89 466 323 111 5 chr11 14740078 14740267 -134043205 - MIR SINE MIR -31 231 23 27241 32 10 3 chr11 14740472 14744758 -134038714 + L1PA3 LINE L1 1841 6155 0 2980 46 0 0 chr11 14744776 14745172 -134038300 + L1PA4 LINE L1 5770 6165 0 279 203 257 0 chr11 14745179 14745253 -134038219 + L2 LINE L2 3221 3313 0 963 267 92 49 chr11 14746274 14746764 -134036708 - LTR33 LTR ERVL 0 521 11 1950 67 11 11 chr11 14746777 14747045 -134036427 - L1PA5 LINE L1 -6 6148 5881 650 283 102 13 chr11 14747459 14747685 -134035787 + MIR SINE MIR 17 262 0 635 322 75 33 chr11 14747698 14748030 -134035442 + L3 LINE CR1 1232 1577 0 643 240 16 0 chr11 14748186 14748315 -134035157 - FLAM_A SINE Alu -2 131 1 565 231 41 112 chr11 14748317 14748585 -134034887 - L2 LINE L2 -8 3305 3057 25791 42 47 2 chr11 14748686 14752125 -134031347 - L1P LINE L1 -2548 3598 7 605 91 101 0 chr11 14752125 14752224 -134031248 + MER1B DNA MER1_type 231 339 0 828 154 8 0 chr11 14752485 14752608 -134030864 - AluJb SINE Alu -188 124 1 1120 352 99 38 chr11 14754143 14755479 -134027993 + L2 LINE L2 1825 3254 -18 515 239 120 25 chr11 14755955 14756176 -134027296 - MIR SINE MIR 0 262 25 4576 89 33 34 chr11 14756583 14757533 -134025939 - MER11A LTR ERVK -167 1069 1 2335 123 0 0 chr11 14757686 14757995 -134025477 - AluSx SINE Alu -3 309 1 26 30 0 0 chr11 14758401 14758434 -134025038 + AT_rich Low_complexity Low_complexity 1 33 0 2351 100 0 0 chr11 14758943 14759252 -134024220 - AluY SINE Alu -2 309 1 23 33 0 0 chr11 14759256 14759286 -134024186 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 14760284 14760315 -134023157 + AT_rich Low_complexity Low_complexity 1 31 0 752 132 8 0 chr11 14760315 14760444 -134023028 + (TC)n Simple_repeat Simple_repeat 1 130 0 2017 127 10 0 chr11 14761003 14761303 -134022169 - AluSx SINE Alu 0 312 10 239 284 9 55 chr11 14761525 14761634 -134021838 - L2 LINE L2 -992 2322 2219 1796 235 127 6 chr11 14761974 14762477 -134020995 + MER69 DNA AcHobo 5 568 -658 1012 175 180 43 chr11 14762475 14762920 -134020552 + MER69 DNA AcHobo 2010 2515 -11 * 879 232 73 31 chr11 14763805 14764064 -134019408 - L2 LINE L2 -1 3312 3043 1915 153 0 20 chr11 14764225 14764519 -134018953 + AluJo SINE Alu 1 288 -24 241 191 0 0 chr11 14764530 14764577 -134018895 + MIR SINE MIR 146 192 -70 14069 123 29 13 chr11 14764653 14767003 -134016469 + Tigger1 DNA MER2_type 31 2418 0 692 292 178 8 chr11 14767306 14767730 -134015742 - L2 LINE L2 -238 3075 2581 1730 180 39 0 chr11 14767792 14768075 -134015397 + AluJo SINE Alu 1 294 -18 318 50 0 0 chr11 14768075 14768115 -134015357 + (TA)n Simple_repeat Simple_repeat 2 41 0 366 253 43 116 chr11 14768683 14768950 -134014522 - MLT1J LTR MaLR -154 296 59 24 0 0 0 chr11 14770964 14770988 -134012484 + AT_rich Low_complexity Low_complexity 1 24 0 2375 203 114 43 chr11 14771431 14772258 -134011214 - L1ME2 LINE L1 -6 6158 5274 2847 116 59 15 chr11 14772261 14772737 -134010735 - MER7C DNA MER2_type 0 602 106 934 220 160 18 chr11 14772763 14773150 -134010322 - L1ME2 LINE L1 -876 5270 4829 2757 254 58 32 chr11 14773569 14773977 -134009495 - L1ME1 LINE L1 0 6166 5770 1786 156 10 24 chr11 14773977 14774272 -134009200 - AluSx SINE Alu -21 291 1 2757 254 58 32 chr11 14774272 14775364 -134008108 - L1ME1 LINE L1 -396 5770 4549 1203 84 0 0 chr11 14775367 14775533 -134007939 + MER51B LTR ERV1 212 377 0 812 154 135 0 chr11 14775533 14775699 -134007773 + MER51B-int LTR ERV1 1 165 -4715 1044 165 0 0 chr11 14775702 14775884 -134007588 + MER51B-int LTR ERV1 419 600 -7216 4434 150 18 31 chr11 14775983 14776831 -134006641 + MER51B-int LTR ERV1 608 1444 -6372 565 220 1 0 chr11 14776842 14776990 -134006482 - L1ME1 LINE L1 -1587 4559 4411 466 126 0 58 chr11 14776990 14777077 -134006395 - Tigger5 DNA MER2_type 0 2323 2242 403 203 0 0 chr11 14777218 14777292 -134006180 + Tigger5 DNA MER2_type 2247 2320 -3 397 188 0 71 chr11 14777292 14777321 -134006151 - Tigger5 DNA MER2_type -340 78 48 1444 133 161 41 chr11 14777321 14777638 -134005834 + THE1A LTR MaLR 1 355 0 397 188 0 71 chr11 14777638 14777692 -134005780 - Tigger5 DNA MER2_type -370 48 1 4269 214 49 60 chr11 14777695 14777873 -134005599 - L1ME1 LINE L1 -1741 4405 4227 2567 129 20 41 chr11 14777873 14778316 -134005156 - Tigger2a DNA MER2_type 0 434 1 4269 214 49 60 chr11 14778316 14778987 -134004485 - L1ME1 LINE L1 -1919 4227 3550 2398 80 0 7 chr11 14778987 14779286 -134004186 - AluSp SINE Alu -16 297 1 4269 214 49 60 chr11 14779286 14780098 -134003374 - L1ME1 LINE L1 -2596 3550 2761 934 96 15 0 chr11 14780226 14780361 -134003111 - MER11A LTR ERVK 0 1266 1130 353 67 0 0 chr11 14780461 14780506 -134002966 + (GA)n Simple_repeat Simple_repeat 1 45 0 387 227 17 42 chr11 14780768 14780887 -134002585 + MLT1L LTR MaLR 174 289 -326 556 225 127 6 chr11 14780930 14781103 -134002369 + MLT1L LTR MaLR 422 615 0 31761 76 11 6 chr11 14781603 14787716 -133995756 - L1PA6 LINE L1 -1 6153 11 342 327 10 10 chr11 14788579 14788680 -133994792 - MIR SINE MIR -155 107 7 495 238 54 0 chr11 14790487 14790634 -133992838 + Tigger8 DNA MER2_type 338 492 -174 1765 118 0 8 chr11 14790966 14791203 -133992269 - AluSx SINE Alu -77 235 1 4873 158 27 36 chr11 14791412 14792230 -133991242 - L1PA16 LINE L1 -8 6158 5345 1997 157 0 10 chr11 14792230 14792530 -133990942 - AluJb SINE Alu -15 297 1 4873 158 27 36 chr11 14792530 14793145 -133990327 - L1PA16 LINE L1 -821 5345 4726 720 167 0 8 chr11 14793164 14793290 -133990182 + AluJb SINE Alu 188 312 0 187 319 176 0 chr11 14793538 14793629 -133989843 + MIR SINE MIR 54 160 -102 1399 258 98 7 chr11 14794410 14794828 -133988644 - LTR16B LTR ERVL 0 464 9 1641 181 11 0 chr11 14794916 14795192 -133988280 + AluJo SINE Alu 4 282 -30 21 0 0 0 chr11 14795192 14795213 -133988259 + AT_rich Low_complexity Low_complexity 1 21 0 1609 50 0 0 chr11 14795213 14795415 -133988057 + L1PA4 LINE L1 5951 6152 -3 320 238 43 6 chr11 14795439 14795603 -133987869 + (TA)n Simple_repeat Simple_repeat 1 170 0 1357 239 118 28 chr11 14796159 14796888 -133986584 - L2 LINE L2 0 3313 2511 191 339 0 0 chr11 14798196 14798258 -133985214 + MIR SINE MIR 200 261 -1 185 234 16 0 chr11 14798581 14798645 -133984827 + CT-rich Low_complexity Low_complexity 4 68 0 21 36 0 0 chr11 14799118 14799146 -133984326 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 14799494 14799521 -133983951 + AT_rich Low_complexity Low_complexity 1 27 0 1969 96 3 96 chr11 14800066 14800389 -133983083 - AluSx SINE Alu -19 293 1 185 258 32 32 chr11 14800796 14800858 -133982614 - L2 LINE L2 0 3313 3252 945 362 43 19 chr11 14801276 14802078 -133981394 + L2 LINE L2 2241 3062 -210 1300 270 130 4 chr11 14802100 14802563 -133980909 + LTR33 LTR ERVL 1 521 0 2027 135 10 3 chr11 14803068 14803365 -133980107 - AluSx SINE Alu -10 302 4 1062 239 39 16 chr11 14803467 14803722 -133979750 - MIR SINE MIR 0 262 2 290 348 126 7 chr11 14804211 14804346 -133979126 + L2 LINE L2 3122 3272 0 270 231 0 0 chr11 14804499 14804564 -133978908 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 284 303 67 0 chr11 14804719 14804808 -133978664 + MIR SINE MIR 8 102 -160 208 359 76 0 chr11 14805845 14805937 -133977535 - L2 LINE L2 -2 3270 3172 1607 184 35 0 chr11 14806003 14806285 -133977187 + AluJo SINE Alu 1 292 -20 312 91 0 0 chr11 14806892 14806936 -133976536 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr11 14808108 14808131 -133975341 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1518 125 96 48 chr11 14808135 14808407 -133975065 - AluJo SINE Alu -27 285 1 498 174 33 0 chr11 14808715 14808807 -133974665 - MIR SINE MIR -10 252 158 1821 310 26 5 chr11 14808970 14809547 -133973925 + HERV16 LTR ERVL 2433 3021 -1975 217 233 0 0 chr11 14809693 14809736 -133973736 + L2 LINE L2 2247 2289 -1025 * 228 252 0 107 chr11 14809735 14809838 -133973634 - L2 LINE L2 0 3313 3222 1822 313 84 45 chr11 14809847 14811177 -133972295 + HERV16 LTR ERVL 3135 4314 -682 308 270 24 56 chr11 14811245 14811371 -133972101 - HERV16 LTR ERVL -1644 3352 3231 767 275 33 69 chr11 14811412 14812120 -133971352 + HERV16 LTR ERVL 4505 4996 0 2179 131 3 0 chr11 14812150 14812441 -133971031 + AluSq SINE Alu 3 294 -19 1629 258 42 7 chr11 14812443 14812873 -133970599 + LTR16B LTR ERVL 20 464 0 233 280 144 51 chr11 14813542 14813660 -133969812 + MIR3 SINE MIR 10 138 -70 1758 169 55 39 chr11 14813837 14814221 -133969251 - MLT1B LTR MaLR 0 390 1 550 292 16 65 chr11 14814288 14814473 -133968999 + MER5A DNA MER1_type 14 189 0 540 231 91 91 chr11 14814483 14814725 -133968747 + MIR SINE MIR 20 261 -1 1518 129 64 0 chr11 14814915 14815148 -133968324 + MER1B DNA MER1_type 1 248 -91 11674 27 4 0 chr11 14815148 14817304 -133966168 - L1PA2 LINE L1 0 6155 3995 348 328 88 97 chr11 14818429 14818780 -133964692 + L2 LINE L2 2925 3272 0 240 353 27 60 chr11 14819115 14819265 -133964207 + L2 LINE L2 3119 3263 -9 832 163 6 30 chr11 14819725 14819891 -133963581 + L1PA6 LINE L1 5993 6154 0 281 404 26 26 chr11 14820562 14820755 -133962717 - MIR3 SINE MIR -9 199 7 213 121 0 0 chr11 14820787 14820820 -133962652 + (CA)n Simple_repeat Simple_repeat 1 33 0 338 284 113 105 chr11 14822219 14822741 -133960731 - L1M2 LINE L1 -5506 1343 818 362 296 177 15 chr11 14824564 14824767 -133958705 - MIR SINE MIR -15 247 12 190 130 19 37 chr11 14824908 14824962 -133958510 + CT-rich Low_complexity Low_complexity 3 55 0 269 361 46 0 chr11 14825998 14826106 -133957366 + MIR3 SINE MIR 79 191 -17 21 57 0 0 chr11 14826536 14826571 -133956901 + AT_rich Low_complexity Low_complexity 1 35 0 232 346 23 30 chr11 14827286 14827419 -133956053 + L2 LINE L2 2685 2816 -498 375 275 56 79 chr11 14827996 14828174 -133955298 - MIR3 SINE MIR -5 203 30 1452 165 4 23 chr11 14828880 14829141 -133954331 - AluJb SINE Alu -12 300 45 708 162 147 35 chr11 14829141 14829338 -133954134 + MLT1D LTR MaLR 27 245 -260 499 31 0 0 chr11 14829360 14829424 -133954048 + AluYa5/8 SINE Alu 171 234 -76 1060 212 29 23 chr11 14829427 14829677 -133953795 + MLT1D LTR MaLR 251 630 -24 2149 146 88 52 chr11 14829677 14830122 -133953350 - MLT1C LTR MaLR -2 465 5 1060 212 29 23 chr11 14830122 14830144 -133953328 + MLT1D LTR MaLR 630 650 -4 348 283 5 91 chr11 14830159 14830346 -133953126 - L1M4 LINE L1 -604 5580 5410 524 260 52 24 chr11 14830352 14830602 -133952870 - L1M4 LINE L1 -1161 4985 4729 1004 186 20 69 chr11 14830607 14830913 -133952559 - L1M4 LINE L1 -957 5189 4899 2359 197 25 39 chr11 14831046 14831321 -133952151 - L1M4 LINE L1 -1272 4874 4597 1483 141 70 0 chr11 14831321 14831605 -133951867 - L1MB2 LINE L1 -2 6169 5866 2359 197 25 39 chr11 14831605 14831978 -133951494 - L1M4 LINE L1 -1549 4597 4235 433 319 125 43 chr11 14831998 14832230 -133951242 + L1MEd LINE L1 510 760 -5359 998 93 0 0 chr11 14832242 14832382 -133951090 + AluY SINE Alu 172 311 0 1797 170 7 3 chr11 14832504 14832793 -133950679 + AluJb SINE Alu 1 290 -22 390 290 49 40 chr11 14832832 14833309 -133950163 + L1MEd LINE L1 1078 1601 -4709 405 0 0 0 chr11 14833575 14833620 -133949852 + (CA)n Simple_repeat Simple_repeat 2 46 0 346 250 108 0 chr11 14833922 14834042 -133949430 + L1MEd LINE L1 2318 2450 -3679 180 176 0 0 chr11 14834056 14834090 -133949382 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 195 352 157 0 chr11 14834221 14834329 -133949143 - L2 LINE L2 -20 3252 3128 193 341 73 16 chr11 14834845 14834968 -133948504 - L2 LINE L2 -829 2485 2356 749 238 48 61 chr11 14835262 14835493 -133947979 + MIR SINE MIR 34 261 -1 21 0 0 0 chr11 14836497 14836518 -133946954 + AT_rich Low_complexity Low_complexity 1 21 0 2244 79 3 7 chr11 14837090 14837380 -133946092 - AluSg SINE Alu -16 294 6 1404 70 65 0 chr11 14838245 14838446 -133945026 - L1PA13 LINE L1 -11 6152 5939 1294 151 9 18 chr11 14839032 14839251 -133944221 - AluJb SINE Alu -12 300 84 3404 94 16 2 chr11 14839351 14839841 -133943631 - L1P4 LINE L1 -345 5823 5327 3849 209 78 96 chr11 14839841 14840450 -133943022 - L1ME LINE L1 -544 5618 5000 1501 199 7 10 chr11 14840450 14840741 -133942731 - AluJo SINE Alu -22 290 1 3849 209 78 96 chr11 14840741 14842184 -133941288 - L1ME LINE L1 -1162 5000 3591 208 331 99 8 chr11 14842272 14842393 -133941079 - MIR SINE MIR -108 154 23 657 278 124 22 chr11 14844933 14845296 -133938176 - HAL1 LINE L1 -14 2493 2094 826 284 161 14 chr11 14845308 14845893 -133937579 - HAL1 LINE L1 -979 1528 858 619 253 12 19 chr11 14845942 14846103 -133937369 - LTR16C LTR ERVL -56 435 276 591 174 143 31 chr11 14846103 14846264 -133937208 - MER3 DNA MER1_type 0 209 31 227 71 0 0 chr11 14846275 14846303 -133937169 - MER3 DNA MER1_type -154 55 28 441 317 66 38 chr11 14846481 14846800 -133936672 - HAL1 LINE L1 -2003 504 177 593 253 23 36 chr11 14847025 14847246 -133936226 - L1M4 LINE L1 -2378 3768 3551 183 42 0 0 chr11 14847270 14847294 -133936178 + (TG)n Simple_repeat Simple_repeat 1 24 0 318 266 55 0 chr11 14847345 14847454 -133936018 - HAL1 LINE L1 -810 1697 1583 295 211 22 56 chr11 14847763 14847853 -133935619 - MER5B DNA MER1_type -86 92 6 1665 213 153 46 chr11 14847862 14848563 -133934909 + L1ME1 LINE L1 4566 5341 -805 1907 185 127 37 chr11 14848607 14849126 -133934346 + L1ME1 LINE L1 5563 6128 -38 218 215 0 15 chr11 14849609 14849674 -133933798 + CT-rich Low_complexity Low_complexity 3 66 0 22 0 0 0 chr11 14849748 14849770 -133933702 + AT_rich Low_complexity Low_complexity 1 22 0 452 194 284 0 chr11 14849911 14850045 -133933427 + MIR SINE MIR 81 252 -10 591 328 73 49 chr11 14850439 14850906 -133932566 - L2 LINE L2 -21 3292 2815 2407 155 41 9 chr11 14851515 14851934 -133931538 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chr11 14851946 14851974 -133931498 + AT_rich Low_complexity Low_complexity 1 28 0 1050 246 31 67 chr11 14852023 14852442 -133931030 + L1MC4 LINE L1 7638 8041 -1 423 194 10 39 chr11 14852817 14852920 -133930552 + HsTC2 DNA Tc2 1 100 -1798 405 308 35 50 chr11 14853007 14853205 -133930267 - L1MEd LINE L1 -5509 610 416 306 321 38 6 chr11 14853646 14853805 -133929667 + MIR SINE MIR 99 262 0 403 291 79 65 chr11 14853898 14854190 -133929282 + MLT1K LTR MaLR 126 421 -167 314 280 21 0 chr11 14854310 14854403 -133929069 + MLT1K LTR MaLR 492 586 -2 2387 131 81 0 chr11 14854871 14855267 -133928205 - MSTA LTR MaLR 0 428 1 1863 174 3 0 chr11 14855580 14855885 -133927587 - AluJo SINE Alu -2 310 5 2119 127 3 3 chr11 14855971 14856279 -133927193 - AluSx SINE Alu -4 308 1 777 229 203 62 chr11 14856783 14857200 -133926272 + MLT2B1 LTR ERVL 1 488 -32 342 45 0 0 chr11 14857200 14857244 -133926228 + (CA)n Simple_repeat Simple_repeat 2 45 0 777 229 203 62 chr11 14857244 14857280 -133926192 + MLT2B1 LTR ERVL 488 518 -2 1067 163 6 0 chr11 14857896 14858068 -133925404 + AluJb SINE Alu 134 306 -6 869 215 0 0 chr11 14858189 14858352 -133925120 + MER3 DNA MER1_type 47 209 0 24 53 0 0 chr11 14858429 14858467 -133925005 + AT_rich Low_complexity Low_complexity 1 38 0 5356 30 5 0 chr11 14858684 14859326 -133924146 - L1P LINE L1 -1413 4733 4089 693 46 0 0 chr11 14859324 14859411 -133924061 + L1PA4 LINE L1 5701 5787 -368 * 43121 31 21 1 chr11 14859413 14865443 -133918029 + L1PA2 LINE L1 3 6155 0 3044 34 16 3 chr11 14865444 14865825 -133917647 + L1PA4 LINE L1 5770 6155 0 1280 202 36 4 chr11 14866120 14866367 -133917105 + MLT1F1 LTR MaLR 308 562 -5 290 322 0 0 chr11 14866579 14866666 -133916806 - MIR SINE MIR 0 262 176 253 288 76 30 chr11 14866807 14866939 -133916533 - L2 LINE L2 -55 3258 3121 1826 161 0 26 chr11 14866977 14867282 -133916190 + AluJo SINE Alu 3 299 -13 797 348 98 33 chr11 14867316 14867914 -133915558 - L2 LINE L2 -400 2914 2250 1141 142 42 58 chr11 14867914 14868154 -133915318 + MER46A DNA MER2_type 1 236 0 797 348 98 33 chr11 14868154 14868351 -133915121 - L2 LINE L2 -1064 2250 2067 557 308 25 0 chr11 14868366 14868525 -133914947 - L2 LINE L2 0 3313 3151 299 229 37 83 chr11 14868560 14868669 -133914803 - L2 LINE L2 -902 2412 2309 863 91 40 17 chr11 14868747 14868922 -133914550 + CT-rich Low_complexity Low_complexity 2 180 0 360 293 0 20 chr11 14868923 14869022 -133914450 + C-rich Low_complexity Low_complexity 5 101 0 513 166 7 40 chr11 14869326 14869477 -133913995 + C-rich Low_complexity Low_complexity 5 150 0 1290 271 110 35 chr11 14869478 14870270 -133913202 + L2 LINE L2 2461 3313 0 1129 297 148 10 chr11 14870269 14870781 -133912691 - L2 LINE L2 -1025 2289 1707 * 524 253 137 17 chr11 14871102 14871335 -133912137 - MIR SINE MIR -1 261 1 458 276 125 15 chr11 14872303 14872517 -133910955 - MIR SINE MIR -6 256 19 923 270 83 99 chr11 14873713 14874268 -133909204 - LTR67 LTR ERVL -10 547 2 21 0 0 0 chr11 14874356 14874377 -133909095 + AT_rich Low_complexity Low_complexity 1 21 0 198 318 63 0 chr11 14874637 14874700 -133908772 + MIR SINE MIR 8 74 -188 282 192 0 0 chr11 14874733 14874785 -133908687 - MIR SINE MIR -113 149 98 2472 73 0 0 chr11 14875105 14875407 -133908065 - AluY SINE Alu -9 302 1 1215 294 32 53 chr11 14875609 14876102 -133907370 - L2 LINE L2 0 3313 2831 1096 203 111 9 chr11 14876491 14876708 -133906764 + MER8 DNA MER2_type 1 239 0 22 0 0 0 chr11 14877169 14877191 -133906281 + AT_rich Low_complexity Low_complexity 1 22 0 1743 176 7 3 chr11 14877924 14878220 -133905252 - AluJb SINE Alu -15 297 1 241 291 48 0 chr11 14878399 14878502 -133904970 - L1M4 LINE L1 -2232 3914 3807 266 258 96 48 chr11 14878714 14878881 -133904591 - L1MC4 LINE L1 -267 7775 7601 755 224 83 26 chr11 14879416 14879608 -133903864 - MER3 DNA MER1_type -6 203 1 342 0 0 0 chr11 14879808 14879846 -133903626 + (TG)n Simple_repeat Simple_repeat 1 38 0 415 399 66 7 chr11 14880446 14880719 -133902753 + L3 LINE CR1 31 319 -1258 199 330 64 21 chr11 14880724 14880818 -133902654 + L3 LINE CR1 270 367 -1210 678 310 32 0 chr11 14880824 14881011 -133902461 + MIR SINE MIR 66 258 -4 2260 86 0 17 chr11 14881045 14881347 -133902125 - AluY SINE Alu -14 297 1 279 98 0 0 chr11 14881431 14881472 -133902000 - L1MB5 LINE L1 -6 6168 6128 * 19270 104 11 39 chr11 14881468 14887865 -133895607 - L1PA3 LINE L1 -2 6153 12 1913 217 21 34 chr11 14887873 14888407 -133895065 - L1M4 LINE L1 -1237 4909 4383 997 109 0 0 chr11 14888831 14888969 -133894503 - FLAM_C SINE Alu 0 143 6 335 291 0 50 chr11 14889831 14889972 -133893500 + LTR16A LTR ERVL 21 154 -296 1851 112 35 0 chr11 14889976 14890267 -133893205 + AluSx SINE Alu 16 315 0 425 276 0 19 chr11 14890279 14890384 -133893088 + LTR16A LTR ERVL 147 249 -201 2280 164 34 17 chr11 14890743 14891152 -133892320 - MSTB LTR MaLR -10 416 1 25 51 0 0 chr11 14891573 14891612 -133891860 + AT_rich Low_complexity Low_complexity 1 39 0 1971 150 0 3 chr11 14892726 14893039 -133890433 - AluSx SINE Alu 0 312 1 242 333 76 23 chr11 14893116 14893248 -133890224 - L3 LINE CR1 -22 1555 1417 7280 24 0 0 chr11 14893690 14894537 -133888935 - L1PA3 LINE L1 -3 6152 5306 298 222 16 127 chr11 14894648 14894774 -133888698 - L3 LINE CR1 -295 1282 1171 294 77 0 0 chr11 14894867 14894906 -133888566 - MLT2B1 LTR ERVL -2 462 424 240 135 22 34 chr11 14894939 14895028 -133888444 + (TA)n Simple_repeat Simple_repeat 2 89 0 1134 236 40 53 chr11 14895030 14895422 -133888050 - MLT2B1 LTR ERVL -92 428 1 907 208 104 74 chr11 14895428 14895861 -133887611 + Charlie4a DNA MER1_type 63 508 0 184 324 144 58 chr11 14895869 14896008 -133887464 - L3 LINE CR1 -469 1108 958 185 294 134 50 chr11 14896019 14896138 -133887334 - L3 LINE CR1 -780 797 669 277 294 71 0 chr11 14896141 14896226 -133887246 + MER5B DNA MER1_type 5 95 -83 24 67 0 0 chr11 14896293 14896338 -133887134 + AT_rich Low_complexity Low_complexity 1 45 0 221 292 83 50 chr11 14896479 14896599 -133886873 - L3 LINE CR1 -1137 440 317 638 315 74 61 chr11 14896664 14897055 -133886417 - LTR16C LTR ERVL 0 491 96 201 294 15 29 chr11 14898329 14898397 -133885075 - L2 LINE L2 -9 3304 3238 1946 143 3 25 chr11 14898651 14898965 -133884507 - MER1B DNA MER1_type -16 323 17 352 216 62 0 chr11 14898965 14899062 -133884410 - L1MDa LINE L1 -4527 2013 1911 * 33077 63 15 4 chr11 14899060 14904276 -133879196 - L1PA5 LINE L1 -1 6153 881 1120 220 43 16 chr11 14904377 14904700 -133878772 + L1MDa LINE L1 2213 2544 -3996 353 370 68 22 chr11 14905036 14905314 -133878158 + L1ME LINE L1 5448 5738 -383 608 266 98 29 chr11 14905862 14906106 -133877366 - MIR SINE MIR 0 262 2 23 0 0 0 chr11 14906341 14906364 -133877108 + AT_rich Low_complexity Low_complexity 1 23 0 263 315 56 0 chr11 14907346 14907435 -133876037 - MIR3 SINE MIR -6 202 109 22 56 0 0 chr11 14907889 14907925 -133875547 + AT_rich Low_complexity Low_complexity 1 36 0 962 191 0 27 chr11 14910916 14911104 -133872368 + MER3 DNA MER1_type 1 183 -26 1443 195 104 22 chr11 14911740 14912058 -133871414 + MER2 DNA MER2_type 1 344 -1 216 225 100 38 chr11 14913597 14913677 -133869795 - MIR SINE MIR -49 213 129 773 148 0 22 chr11 14913818 14913953 -133869519 + FLAM_A SINE Alu 1 132 -1 4646 180 58 3 chr11 14914153 14915057 -133868415 + Cheshire DNA MER1_type 1463 2415 -5 181 404 0 47 chr11 14915176 14915347 -133868125 - MIR3 SINE MIR -27 181 19 909 268 54 12 chr11 14915455 14915874 -133867598 - LTR33 LTR ERVL 0 521 6 14843 29 20 1 chr11 14915997 14918566 -133864906 - L1PA2 LINE L1 -1 6154 3550 2231 104 0 0 chr11 14918743 14919041 -133864431 - AluSc SINE Alu -11 298 1 459 312 219 5 chr11 14919243 14919458 -133864014 + MIR SINE MIR 2 262 0 311 274 69 39 chr11 14919528 14919630 -133863842 - L2 LINE L2 -6 3307 3203 1354 124 27 0 chr11 14919987 14920212 -133863260 - L1MA4 LINE L1 -17 6283 6053 800 160 0 0 chr11 14921219 14921338 -133862134 + FLAM_C SINE Alu 1 119 -24 489 196 152 9 chr11 14921349 14921461 -133862011 - FLAM_A SINE Alu -5 128 1 4161 251 106 13 chr11 14921645 14922945 -133860527 - L2 LINE L2 -391 2923 1446 268 238 36 48 chr11 14923021 14923105 -133860367 + MIR SINE MIR 7 89 -173 893 333 40 27 chr11 14923126 14923604 -133859868 - LTR33 LTR ERVL 0 521 38 224 261 226 0 chr11 14923627 14923742 -133859730 + MIR SINE MIR 110 250 -12 483 319 125 14 chr11 14923757 14923973 -133859499 + MIR SINE MIR 5 244 -18 51 31 0 0 chr11 14924997 14925062 -133858410 + AT_rich Low_complexity Low_complexity 1 65 0 30 45 0 0 chr11 14926253 14926297 -133857175 + AT_rich Low_complexity Low_complexity 1 44 0 475 307 60 14 chr11 14926373 14926591 -133856881 + L2 LINE L2 1609 1836 -1478 729 257 59 13 chr11 14926832 14927069 -133856403 - L1ME3A LINE L1 -242 5928 5681 302 236 90 22 chr11 14927070 14927159 -133856313 - MER5C DNA MER1_type -5 319 225 386 138 0 0 chr11 14927168 14927233 -133856239 - MER5C DNA MER1_type -200 124 60 326 114 51 0 chr11 14927983 14928062 -133855410 + (TA)n Simple_repeat Simple_repeat 1 83 0 803 216 10 41 chr11 14928062 14928256 -133855216 - MER106A DNA MER1_type -47 189 2 627 339 184 10 chr11 14928466 14928858 -133854614 + L3 LINE CR1 462 921 -656 643 259 49 0 chr11 14929256 14929418 -133854054 + MER58C DNA MER1_type 4 173 -42 28 0 0 0 chr11 14930540 14930568 -133852904 + AT_rich Low_complexity Low_complexity 1 28 0 892 197 124 32 chr11 14930812 14931061 -133852411 - L1ME3A LINE L1 -5 6165 5894 312 211 105 60 chr11 14931069 14931202 -133852270 - L1ME4a LINE L1 -4 6117 5979 2166 266 42 39 chr11 14931202 14932120 -133851352 - L1M4 LINE L1 -1834 4312 3392 213 266 63 13 chr11 14932662 14932741 -133850731 + MIR SINE MIR 91 173 -89 251 220 17 0 chr11 14932834 14932893 -133850579 - MER58 DNA MER1_type 0 2420 2361 885 264 86 35 chr11 14933125 14933538 -133849934 + L2 LINE L2 2706 3150 -163 186 346 0 0 chr11 14933804 14933856 -133849616 + L2 LINE L2 2995 3046 -226 2260 94 3 0 chr11 14933926 14934223 -133849249 - AluSp SINE Alu -15 298 1 3059 212 71 24 chr11 14934335 14934911 -133848561 + L1MDb LINE L1 43 590 -5816 1019 16 0 8 chr11 14934911 14935027 -133848445 + L1PA2 LINE L1 6032 6148 -7 214 39 0 0 chr11 14935027 14935053 -133848419 + (TAA)n Simple_repeat Simple_repeat 2 180 0 3059 212 71 24 chr11 14935061 14936059 -133847413 + L1MDb LINE L1 590 1790 -4616 * 5129 125 2 18 chr11 14936054 14936887 -133846585 + L1P LINE L1 2 821 -5325 1698 137 147 0 chr11 14937317 14937631 -133845841 - MER46B DNA MER2_type 0 236 2 3694 177 40 71 chr11 14938280 14938324 -133845148 - MER21B LTR ERV1 -53 810 766 291 54 0 0 chr11 14938324 14938361 -133845111 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 3694 177 40 71 chr11 14938361 14938402 -133845070 - MER21B LTR ERV1 -97 766 725 2375 104 10 0 chr11 14938402 14938711 -133844761 - AluSx SINE Alu 0 312 1 3694 177 40 71 chr11 14938711 14939460 -133844012 - MER21B LTR ERV1 -138 725 1 210 167 0 0 chr11 14939822 14939858 -133843614 + T-rich Low_complexity Low_complexity 1 36 0 6836 59 19 6 chr11 14939981 14941342 -133842130 - L1PA7 LINE L1 -8 6146 4771 427 83 0 56 chr11 14941342 14941414 -133842058 + L1P3 LINE L1 1102 1169 -5292 * 25836 114 14 73 chr11 14941413 14944336 -133839136 - L1PA7 LINE L1 -1379 4767 2266 1803 98 0 0 chr11 14944336 14944571 -133838901 + AluSg SINE Alu 55 289 -21 25836 114 14 73 chr11 14944571 14946704 -133836768 - L1PA7 LINE L1 -3880 2266 9 2669 141 134 12 chr11 14946802 14947361 -133836111 - LTR24C LTR ERV1 -8 627 1 768 221 38 0 chr11 14947516 14947674 -133835798 + MER5A DNA MER1_type 1 164 -25 979 222 51 14 chr11 14947688 14947904 -133835568 + MER58A DNA MER1_type 1 224 0 267 295 0 26 chr11 14948311 14948389 -133835083 - L2 LINE L2 -4 3268 3193 365 272 32 0 chr11 14948915 14949073 -133834399 + L1MDb LINE L1 1148 1310 -5099 664 177 57 0 chr11 14949287 14949428 -133834044 + L1MA9 LINE L1 6164 6312 0 510 282 6 6 chr11 14949470 14949640 -133833832 + L1MDb LINE L1 1842 2011 -4576 6300 63 3 22 chr11 14949651 14950007 -133833465 + L1PA7 LINE L1 5315 5676 -478 2141 76 41 28 chr11 14950007 14950297 -133833175 + AluY SINE Alu 1 294 -17 6300 63 3 22 chr11 14950297 14950414 -133833058 + L1PA7 LINE L1 5676 5794 -360 2822 22 0 0 chr11 14950414 14950725 -133832747 + AluYa5 SINE Alu 1 311 0 6300 63 3 22 chr11 14950725 14951106 -133832366 + L1PA7 LINE L1 5794 6154 0 272 303 68 22 chr11 14951121 14951491 -133831981 + L1MDb LINE L1 2068 2454 -4133 274 129 81 16 chr11 14951504 14951566 -133831906 + L1MB8 LINE L1 998 1063 -5479 2190 99 0 45 chr11 14951601 14951915 -133831557 + AluSx SINE Alu 1 300 -12 556 236 42 51 chr11 14952021 14952334 -133831138 + L1MB7 LINE L1 870 1179 -5363 1936 223 108 11 chr11 14952361 14952988 -133830484 + L1MB7 LINE L1 4600 5287 -1357 1807 179 31 5 chr11 14953006 14953397 -133830075 + L1MB7 LINE L1 6074 6474 -208 1676 209 6 6 chr11 14953397 14953737 -133829735 + MLT1A1 LTR MaLR 1 340 -25 9184 23 25 0 chr11 14954003 14955881 -133827591 - L1PA3 LINE L1 0 6155 4251 893 188 28 24 chr11 14955912 14956125 -133827347 + L1MB7 LINE L1 6469 6682 0 644 200 186 27 chr11 14956131 14956426 -133827046 + L1MB8 LINE L1 3279 3620 -3024 458 264 7 0 chr11 14956452 14956592 -133826880 + L1MB8 LINE L1 3927 4067 -2577 2042 129 21 3 chr11 14956676 14957010 -133826462 + MLT1A1 LTR MaLR 26 365 0 1142 189 44 83 chr11 14957010 14957550 -133825922 - MLT1D LTR MaLR -18 487 1 1671 243 76 34 chr11 14957551 14958395 -133825077 + L1MB8 LINE L1 4075 4953 -1691 2104 112 0 32 chr11 14958515 14958828 -133824644 + AluSx SINE Alu 1 303 -9 1010 156 13 0 chr11 14958828 14958982 -133824490 + AluSg/x SINE Alu 137 292 -20 325 259 25 9 chr11 14959027 14959078 -133824394 + L1MB8 LINE L1 5752 5801 -896 1291 260 167 23 chr11 14959078 14959594 -133823878 - MLT1E LTR MaLR -2 591 2 325 259 25 9 chr11 14959594 14959755 -133823717 + L1MB8 LINE L1 5801 5967 -730 294 29 0 0 chr11 14959776 14959811 -133823661 + (CA)n Simple_repeat Simple_repeat 2 36 0 1551 178 58 41 chr11 14959816 14960158 -133823314 - MLT2D LTR ERVL -48 366 19 303 238 123 16 chr11 14960433 14960555 -133822917 + L2 LINE L2 3179 3313 0 5079 56 2 0 chr11 14960658 14961286 -133822186 + L1PA5 LINE L1 5526 6154 0 1575 178 56 7 chr11 14961305 14961591 -133821881 + AluJb SINE Alu 1 300 -12 28 61 0 0 chr11 14961591 14961640 -133821832 + AT_rich Low_complexity Low_complexity 1 49 0 473 206 235 18 chr11 14962281 14962451 -133821021 - MER6B DNA MER2_type -3 207 1 22 0 0 0 chr11 14962577 14962599 -133820873 + AT_rich Low_complexity Low_complexity 1 22 0 303 299 17 51 chr11 14963507 14963624 -133819848 + L1ME LINE L1 14 126 -5944 310 148 0 0 chr11 14963909 14963963 -133819509 - L1MB7 LINE L1 -31 6153 6100 462 48 0 0 chr11 14964006 14964069 -133819403 + L1M4 LINE L1 3573 3635 -2511 1171 196 57 21 chr11 14964084 14964415 -133819057 + L1MB8 LINE L1 6279 6621 -55 1407 188 56 32 chr11 14964416 14964757 -133818715 + MLT1A1 LTR MaLR 6 354 -11 472 208 117 53 chr11 14964818 14965048 -133818424 - MLT1F1 LTR MaLR -52 515 231 * 491 260 153 31 chr11 14965024 14965278 -133818194 - MLT1G1 LTR MaLR -295 300 16 229 273 65 0 chr11 14965591 14965668 -133817804 - MIR SINE MIR -59 203 122 1725 165 37 30 chr11 14965743 14966040 -133817432 - AluJo SINE Alu -13 299 1 18081 185 32 21 chr11 14966138 14973161 -133810311 + L1PA13 LINE L1 2 7601 0 2244 118 58 3 chr11 14973324 14973688 -133809784 + L1PA13 LINE L1 5769 6152 -11 784 255 150 3 chr11 14973699 14974025 -133809447 - L1ME3A LINE L1 -114 6056 5683 29 28 0 0 chr11 14974910 14974946 -133808526 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr11 14975742 14975779 -133807693 + AT_rich Low_complexity Low_complexity 1 37 0 2036 131 0 10 chr11 14976784 14977090 -133806382 - AluSq SINE Alu -10 303 1 349 257 53 66 chr11 14977807 14977959 -133805513 + MIR SINE MIR 110 259 -3 265 341 101 14 chr11 14978149 14978287 -133805185 - MIR SINE MIR -111 151 2 255 330 23 0 chr11 14978322 14978410 -133805062 - MIR SINE MIR -14 248 159 186 167 28 0 chr11 14979049 14979085 -133804387 + L2 LINE L2 3174 3210 -62 25 0 0 0 chr11 14979268 14979293 -133804179 + AT_rich Low_complexity Low_complexity 1 25 0 1459 179 16 20 chr11 14979514 14979765 -133803707 + AluJo SINE Alu 1 250 -62 443 320 90 21 chr11 14980072 14980306 -133803166 - L1MEc LINE L1 -4818 1578 1329 552 159 56 0 chr11 14980310 14980417 -133803055 - MLT1D-int LTR MaLR -1256 115 3 1175 181 78 16 chr11 14980420 14980636 -133802836 - MLT1D LTR MaLR 0 505 271 2012 140 3 16 chr11 14980636 14980951 -133802521 - AluSx SINE Alu -1 311 1 1175 181 78 16 chr11 14980951 14980977 -133802495 - MLT1D LTR MaLR -234 271 248 1689 218 21 19 chr11 14981111 14981542 -133801930 - MLT1-int LTR MaLR -768 603 172 2236 67 0 3 chr11 14981799 14982116 -133801356 - AluY SINE Alu 0 316 1 330 368 30 13 chr11 14982116 14982350 -133801122 + ERVL LTR ERVL 436 673 -5091 275 262 12 0 chr11 14982546 14982630 -133800842 + ERVL LTR ERVL 871 955 -4530 2215 294 50 19 chr11 14982925 14983816 -133799656 + ERVL LTR ERVL 2000 2972 -2565 1088 312 70 29 chr11 14984200 14984796 -133798676 + ERVL LTR ERVL 3378 3998 -1656 1830 213 6 19 chr11 14984796 14985155 -133798317 + MLT2D LTR ERVL 1 449 -71 258 32 0 0 chr11 14985155 14985186 -133798286 + (TC)n Simple_repeat Simple_repeat 2 32 0 1830 213 6 19 chr11 14985186 14985258 -133798214 + MLT2D LTR ERVL 449 520 0 907 126 132 0 chr11 14985400 14985559 -133797913 - MSTA LTR MaLR 0 428 249 753 106 0 0 chr11 14985563 14985667 -133797805 - AluJb SINE Alu -208 104 1 892 102 57 6 chr11 14985667 14985824 -133797648 - L1 LINE L1 -1374 4772 4608 801 211 0 15 chr11 14985819 14986018 -133797454 - L1 LINE L1 -1788 4358 4163 * 24 0 0 0 chr11 14986243 14986267 -133797205 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 14986401 14986424 -133797048 + AT_rich Low_complexity Low_complexity 1 23 0 666 211 24 42 chr11 14986431 14986597 -133796875 + FAM SINE Alu 1 163 -12 37726 37 1 2 chr11 14988189 14992974 -133790498 + L1P LINE L1 7 4790 -1356 1890 96 43 28 chr11 14993074 14993356 -133790116 - AluY SINE Alu -25 286 1 234 0 0 0 chr11 14993743 14993769 -133789703 + (TG)n Simple_repeat Simple_repeat 2 27 0 253 333 64 50 chr11 14994043 14994184 -133789288 + MIR3 SINE MIR 8 150 -58 2095 111 7 0 chr11 14994282 14994588 -133788884 - AluSx SINE Alu 0 308 1 757 264 190 39 chr11 14994892 14995013 -133788459 + L2 LINE L2 2616 2717 -596 795 176 8 0 chr11 14995013 14995144 -133788328 + FLAM_C SINE Alu 2 133 0 757 264 190 39 chr11 14995144 14995633 -133787839 + L2 LINE L2 2717 3306 -7 2361 85 3 0 chr11 14996752 14997046 -133786426 - AluSc SINE Alu -12 297 3 447 236 72 48 chr11 14997200 14997714 -133785758 + HAL1 LINE L1 975 1567 -940 431 243 46 59 chr11 14997717 14997869 -133785603 - L2 LINE L2 0 3313 3164 342 151 0 0 chr11 14997881 14997954 -133785518 + GA-rich Low_complexity Low_complexity 2 74 0 413 297 39 11 chr11 14998020 14998202 -133785270 + HAL1 LINE L1 1569 1755 -752 1522 192 38 33 chr11 14998220 14998585 -133784887 + THE1C LTR MaLR 1 367 -8 2245 91 3 3 chr11 14998806 14999103 -133784369 + AluY SINE Alu 1 297 -14 276 191 12 95 chr11 15001038 15001122 -133782350 + MIR SINE MIR 65 141 -121 23 20 0 61 chr11 15001600 15001649 -133781823 + AT_rich Low_complexity Low_complexity 1 46 0 349 131 16 33 chr11 15001980 15002041 -133781431 - L2 LINE L2 0 3313 3254 21 57 0 0 chr11 15002739 15002774 -133780698 + AT_rich Low_complexity Low_complexity 1 35 0 300 291 60 26 chr11 15002792 15002909 -133780563 - MIR SINE MIR -60 202 82 204 179 0 0 chr11 15003136 15003175 -133780297 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 4098 132 48 3 chr11 15003853 15004533 -133778939 - MER50 LTR ERV1 -23 711 1 247 226 0 38 chr11 15004533 15004586 -133778886 + L3 LINE CR1 1520 1570 -7 2299 94 0 0 chr11 15004818 15005105 -133778367 - AluSg SINE Alu -23 287 1 3350 65 10 0 chr11 15005121 15005719 -133777753 - L1PA7 LINE L1 -1 6153 5359 10719 93 9 25 chr11 15005719 15007436 -133776036 + L1P LINE L1 1669 3357 -2789 30 45 0 0 chr11 15007850 15007894 -133775578 + AT_rich Low_complexity Low_complexity 1 44 0 1064 212 62 21 chr11 15008181 15008422 -133775050 + MIR SINE MIR 11 261 -1 349 248 139 15 chr11 15008998 15009135 -133774337 - MIR SINE MIR -34 228 75 1097 155 130 0 chr11 15010030 15010237 -133773235 + MER46A DNA MER2_type 2 235 -1 191 273 0 0 chr11 15010338 15010382 -133773090 - L2 LINE L2 -8 3264 3221 23 54 0 0 chr11 15010998 15011035 -133772437 + AT_rich Low_complexity Low_complexity 1 37 0 1413 80 11 5 chr11 15011079 15011267 -133772205 + AluY SINE Alu 106 294 -17 204 265 44 116 chr11 15011354 15011535 -133771937 + L2 LINE L2 3062 3229 -84 26 30 0 0 chr11 15011546 15011579 -133771893 + AT_rich Low_complexity Low_complexity 1 33 0 257 232 188 0 chr11 15011583 15011652 -133771820 + L2 LINE L2 3232 3313 0 361 314 97 33 chr11 15014556 15014877 -133768595 - L2 LINE L2 -229 3043 2692 1099 172 4 147 chr11 15014889 15015168 -133768304 + MER8 DNA MER2_type 1 239 0 1376 143 174 31 chr11 15015187 15015601 -133767871 + LTR54B LTR ERV1 24 496 -2 394 307 124 51 chr11 15015709 15015966 -133767506 - L2 LINE L2 -826 2488 2213 365 176 24 24 chr11 15015981 15016066 -133767406 + LTR45 LTR ERV1 441 525 0 679 109 10 0 chr11 15016139 15016240 -133767232 + AluJ/FLAM SINE Alu 1 102 -210 508 301 92 58 chr11 15016259 15016672 -133766800 - L1MEc LINE L1 -3623 2592 2202 331 193 126 22 chr11 15016969 15017104 -133766368 - HAL1b LINE L1 -517 831 683 316 281 70 9 chr11 15017995 15018109 -133765363 + MIR3 SINE MIR 82 202 -6 651 174 99 0 chr11 15018468 15018589 -133764883 + FLAM_C SINE Alu 1 133 0 459 223 29 0 chr11 15019377 15019480 -133763992 - MER94 DNA DNA -2 132 27 24 0 0 0 chr11 15019675 15019699 -133763773 + AT_rich Low_complexity Low_complexity 1 24 0 182 281 258 22 chr11 15020969 15021058 -133762414 + MIR SINE MIR 19 128 -80 222 271 278 8 chr11 15022093 15022226 -133761246 + MIR SINE MIR 44 212 -50 21 36 0 0 chr11 15023005 15023033 -133760439 + AT_rich Low_complexity Low_complexity 1 28 0 2062 156 30 30 chr11 15023759 15024157 -133759315 + MSTB LTR MaLR 29 426 0 336 281 37 0 chr11 15024268 15024350 -133759122 + L2 LINE L2 1234 1318 -1996 847 297 238 3 chr11 15024362 15024685 -133758787 - L2 LINE L2 -4 3309 2911 276 312 161 0 chr11 15024748 15024841 -133758631 + MER91A DNA MER1_type 89 196 0 10752 25 6 3 chr11 15024888 15026930 -133756542 + L1PA3 LINE L1 4112 6155 0 376 316 64 15 chr11 15028378 15028570 -133754902 + MIR3 SINE MIR 6 208 0 951 273 38 35 chr11 15029892 15030211 -133753261 + L2 LINE L2 2365 2684 -630 * 1200 268 68 16 chr11 15030207 15030587 -133752885 + L2 LINE L2 2914 3313 0 186 336 76 42 chr11 15030924 15031043 -133752429 + L2 LINE L2 3150 3272 0 2307 73 3 3 chr11 15032080 15032380 -133751092 + AluY SINE Alu 1 300 -11 2590 42 0 10 chr11 15032768 15033080 -133750392 - AluY SINE Alu 0 311 3 214 286 113 15 chr11 15033414 15033547 -133749925 + MIR SINE MIR 95 240 -22 692 237 130 56 chr11 15035340 15035628 -133747844 - L2 LINE L2 0 3313 2993 2173 194 45 47 chr11 15035628 15036134 -133747338 - MLT1D LTR MaLR 0 505 1 692 237 130 56 chr11 15036134 15036200 -133747272 - L2 LINE L2 -320 2993 2933 1073 184 41 5 chr11 15037525 15037743 -133745729 - MER96B DNA MER1_type? -183 234 9 213 167 0 42 chr11 15038140 15038188 -133745284 + (TGG)n Simple_repeat Simple_repeat 1 46 0 289 301 98 14 chr11 15038446 15038589 -133744883 - MIR3 SINE MIR -45 163 9 * 473 236 95 47 chr11 15038576 15038724 -133744748 - L2 LINE L2 -1 3312 3158 474 290 89 30 chr11 15040767 15040936 -133742536 - MIR3 SINE MIR -11 197 19 183 156 0 0 chr11 15040936 15040968 -133742504 + T-rich Low_complexity Low_complexity 1 32 0 2441 233 19 15 chr11 15041074 15041603 -133741869 + LTR31 LTR ERV1 74 604 -15 2378 84 3 3 chr11 15043094 15043403 -133740069 - AluSq SINE Alu -4 309 1 1562 230 16 59 chr11 15043567 15044050 -133739422 + L1ME2 LINE L1 5672 6138 -26 384 233 48 107 chr11 15044097 15044303 -133739169 + L1MC4 LINE L1 7821 8014 -28 25 0 0 0 chr11 15044374 15044399 -133739073 + AT_rich Low_complexity Low_complexity 1 25 0 297 323 65 0 chr11 15044498 15044699 -133738773 + L1ME LINE L1 5559 5772 -349 995 290 63 43 chr11 15045001 15045184 -133738288 + LTR16A LTR ERVL 17 195 -255 1010 236 0 6 chr11 15045184 15045362 -133738110 - MER45A DNA AcHobo 0 178 2 995 290 63 43 chr11 15045362 15045592 -133737880 + LTR16A LTR ERVL 195 438 -12 2516 178 28 8 chr11 15045748 15046248 -133737224 + L1MB4 LINE L1 5634 6143 -37 917 193 19 42 chr11 15046258 15046470 -133737002 + L1MCc LINE L1 19 225 -6198 297 258 34 11 chr11 15046472 15046591 -133736881 + MLT2B2 LTR ERVL 99 221 -294 727 239 39 0 chr11 15046594 15046774 -133736698 + MER96B DNA MER1_type? 230 416 -1 186 133 0 0 chr11 15047979 15048009 -133735463 + (TG)n Simple_repeat Simple_repeat 2 31 0 375 23 0 0 chr11 15048694 15048738 -133734734 + (TG)n Simple_repeat Simple_repeat 2 45 0 195 254 42 14 chr11 15048999 15049070 -133734402 - MIR SINE MIR -76 132 60 523 259 55 17 chr11 15050540 15050743 -133732729 - MIR SINE MIR -14 248 2 3436 260 95 69 chr11 15051141 15052680 -133730792 - L1MEc LINE L1 -2016 4199 2635 2435 93 0 0 chr11 15052680 15052980 -133730492 - AluSp SINE Alu -13 300 1 3436 260 95 69 chr11 15052980 15053495 -133729977 - L1MEc LINE L1 -3580 2635 2135 263 188 78 0 chr11 15053559 15053623 -133729849 + L1ME2 LINE L1 6087 6155 -9 453 360 19 0 chr11 15054870 15055031 -133728441 + L2 LINE L2 2915 3078 -194 1595 202 11 57 chr11 15055117 15055288 -133728184 + MLT2C1 LTR ERVL 3 149 -248 2219 154 21 3 chr11 15055288 15055626 -133727846 + MER2 DNA MER2_type 1 344 0 1595 202 11 57 chr11 15055626 15055826 -133727646 + MLT2C1 LTR ERVL 149 357 -40 246 128 0 0 chr11 15055849 15055888 -133727584 + (TA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chr11 15055906 15055974 -133727498 + AT_rich Low_complexity Low_complexity 1 68 0 217 372 51 0 chr11 15056046 15056124 -133727348 + L2 LINE L2 3141 3222 -50 353 294 110 22 chr11 15056893 15057029 -133726443 + MER5A DNA MER1_type 36 183 -6 252 360 70 0 chr11 15057557 15057657 -133725815 + MIR SINE MIR 40 146 -62 1218 149 115 62 chr11 15057772 15058060 -133725412 + AluJo SINE Alu 1 303 -9 219 69 0 0 chr11 15058060 15058089 -133725383 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 200 114 0 29 chr11 15058093 15058128 -133725344 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1602 271 155 19 chr11 15058341 15058865 -133724607 + MLT1G1 LTR MaLR 1 595 0 1647 174 18 92 chr11 15059028 15059418 -133724054 - MLT1A1 LTR MaLR -4 361 1 295 225 151 86 chr11 15059438 15059865 -133723607 + L1ME4a LINE L1 5672 6116 -5 1861 157 3 10 chr11 15060144 15060444 -133723028 + AluJo SINE Alu 3 300 -12 193 336 93 37 chr11 15061139 15061246 -133722226 - L2 LINE L2 0 3272 3160 2639 135 38 21 chr11 15061392 15061813 -133721659 + MSTA LTR MaLR 1 428 0 224 392 0 0 chr11 15061905 15062002 -133721470 - MIR SINE MIR -7 255 159 470 391 13 4 chr11 15062110 15062348 -133721124 + L2 LINE L2 2738 2977 -337 330 324 123 9 chr11 15062529 15062748 -133720724 + L2 LINE L2 2977 3220 -52 195 129 0 0 chr11 15063224 15063255 -133720217 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 828 159 0 108 chr11 15063414 15063590 -133719882 + L1MD3 LINE L1 6724 6880 -1115 2773 161 106 27 chr11 15063593 15064185 -133719287 + L1MD3 LINE L1 7352 7990 -5 416 234 189 17 chr11 15064812 15064987 -133718485 - MIR SINE MIR -10 252 48 1485 156 29 25 chr11 15065036 15065274 -133718198 + MER8 DNA MER2_type 1 239 0 1953 189 103 7 chr11 15065736 15066153 -133717319 - LTR32 LTR ERVL 0 471 15 232 363 15 37 chr11 15066469 15066604 -133716868 + MIR3 SINE MIR 13 144 -64 285 98 0 0 chr11 15066710 15066751 -133716721 + (CAA)n Simple_repeat Simple_repeat 2 42 0 277 206 35 52 chr11 15066765 15066867 -133716605 - MLT1I LTR MaLR -19 576 291 495 280 60 60 chr11 15066905 15067105 -133716367 - MLT1I LTR MaLR -125 284 85 334 242 113 40 chr11 15067225 15067349 -133716123 - MIR SINE MIR -2 260 128 318 256 175 29 chr11 15068117 15068254 -133715218 - L2 LINE L2 -9 3263 3107 1948 163 69 67 chr11 15068492 15068958 -133714514 + MLT1C LTR MaLR 1 467 0 332 286 100 54 chr11 15069129 15069370 -133714102 - MLT1L LTR MaLR -14 601 350 1000 276 58 48 chr11 15069565 15069988 -133713484 - MLT1H LTR MaLR -8 541 64 6166 114 14 3 chr11 15069988 15070478 -133712994 - L1PA16 LINE L1 -9 6157 5673 180 0 0 0 chr11 15070478 15070498 -133712974 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6166 114 14 3 chr11 15070498 15071046 -133712426 - L1PA16 LINE L1 -493 5673 5105 1000 276 58 48 chr11 15071046 15071109 -133712363 - MLT1H LTR MaLR -485 64 3 225 220 0 60 chr11 15071111 15071161 -133712311 - MLT1K LTR MaLR -438 150 104 439 182 114 53 chr11 15073048 15073180 -133710292 - MER5B DNA MER1_type -5 173 34 211 188 275 0 chr11 15073364 15073433 -133710039 + MIR SINE MIR 66 153 -109 528 114 0 25 chr11 15073560 15073639 -133709833 - Charlie3 DNA MER1_type 0 2712 2636 19948 93 7 3 chr11 15073790 15075436 -133708036 - Charlie3 DNA MER1_type -86 2620 956 2286 131 39 28 chr11 15075436 15075795 -133707677 - THE1B LTR MaLR -1 363 1 19948 93 7 3 chr11 15075795 15076756 -133706716 - Charlie3 DNA MER1_type -1750 956 1 717 97 0 0 chr11 15077247 15077350 -133706122 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 546 133 0 0 chr11 15077768 15077858 -133705614 + (GGGGA)n Simple_repeat Simple_repeat 4 93 0 278 280 30 106 chr11 15078704 15078794 -133704678 + MIR3 SINE MIR 72 152 -56 2049 125 0 14 chr11 15078794 15079120 -133704352 + AluSx SINE Alu 1 322 0 278 280 30 106 chr11 15079120 15079160 -133704312 + MIR3 SINE MIR 152 193 -15 1904 142 151 9 chr11 15080152 15080497 -133702975 - MSTA LTR MaLR -34 394 1 9097 166 28 13 chr11 15080497 15082117 -133701355 - MSTA-int LTR MaLR 0 1651 7 2170 123 0 25 chr11 15082118 15082436 -133701036 - AluSx SINE Alu -2 310 1 1975 157 141 8 chr11 15082444 15082819 -133700653 - MSTA LTR MaLR 0 428 4 * 2226 179 113 5 chr11 15082819 15083247 -133700225 - MLT2B1 LTR ERVL -42 478 3 247 257 86 0 chr11 15083367 15083437 -133700035 - L2 LINE L2 -38 3275 3200 1156 273 230 7 chr11 15083635 15084071 -133699401 + L2 LINE L2 1597 1934 -1380 2971 172 72 72 chr11 15084071 15084798 -133698674 - LTR8A LTR ERV1 0 727 1 1156 273 230 7 chr11 15084798 15084947 -133698525 + L2 LINE L2 1934 2313 -1001 597 232 38 44 chr11 15085410 15085660 -133697812 - L1ME LINE L1 -344 5822 5578 585 194 198 38 chr11 15086388 15086625 -133696847 + ORSL DNA AcHobo 1 275 0 24 53 0 0 chr11 15087463 15087501 -133695971 + AT_rich Low_complexity Low_complexity 1 38 0 592 275 58 79 chr11 15088222 15088479 -133694993 + L1MEd LINE L1 602 863 -5447 1711 207 24 30 chr11 15088479 15088851 -133694621 - MLT1A2 LTR MaLR -4 370 1 592 275 58 79 chr11 15088851 15089060 -133694412 + L1MEd LINE L1 863 1075 -5235 2016 147 7 7 chr11 15089060 15089367 -133694105 + AluSx SINE Alu 1 307 -5 592 275 58 79 chr11 15089367 15089905 -133693567 + L1MEd LINE L1 1075 1626 -4684 4162 193 31 8 chr11 15090818 15091667 -133691805 + MER63C DNA MER1_type 63 930 0 192 339 92 0 chr11 15092138 15092203 -133691269 - MIR SINE MIR -108 100 30 236 319 0 0 chr11 15092217 15092289 -133691183 + (CATA)n Simple_repeat Simple_repeat 3 74 0 423 280 42 98 chr11 15093114 15093316 -133690156 - MIR3 SINE MIR -13 195 2 272 302 93 39 chr11 15094049 15094178 -133689294 - L2 LINE L2 -21 3251 3116 405 221 32 21 chr11 15094233 15094328 -133689144 + MER5A DNA MER1_type 4 99 -90 249 260 68 14 chr11 15094340 15094413 -133689059 - MER5B DNA MER1_type -7 171 95 224 332 119 67 chr11 15094422 15094916 -133688556 - L2 LINE L2 -183 3089 2566 378 149 0 15 chr11 15094916 15094983 -133688489 + MLT1E3 LTR MaLR 559 624 0 703 253 6 6 chr11 15094983 15095149 -133688323 + MLT1E3-int LTR MaLR 1 166 -1205 183 213 106 0 chr11 15095359 15095406 -133688066 - MER5B DNA MER1_type -49 129 78 1060 213 29 14 chr11 15095478 15095685 -133687787 + MER63A DNA MER1_type 1 210 0 381 329 71 37 chr11 15096945 15097218 -133686254 - L2 LINE L2 -255 3058 2778 291 308 136 10 chr11 15097797 15097995 -133685477 + L3 LINE CR1 1344 1566 -11 1674 247 24 3 chr11 15098318 15098694 -133684778 - MLT1F1 LTR MaLR -1 566 183 1941 229 110 51 chr11 15098735 15098891 -133684581 + L1ME2 LINE L1 5255 5400 -764 1767 179 0 20 chr11 15098891 15099188 -133684284 - AluJb SINE Alu -17 295 5 1941 229 110 51 chr11 15099188 15099655 -133683817 + L1ME2 LINE L1 5400 5940 -224 331 55 18 18 chr11 15099655 15099710 -133683762 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1941 229 110 51 chr11 15099710 15099903 -133683569 + L1ME2 LINE L1 5940 6120 -44 641 318 13 26 chr11 15100037 15100270 -133683202 + MIR SINE MIR 8 237 -25 292 243 69 49 chr11 15100287 15100431 -133683041 + L1M4 LINE L1 3818 3964 -2182 312 221 12 35 chr11 15100481 15100567 -133682905 + L1M4 LINE L1 4084 4167 -1979 22 0 0 0 chr11 15100859 15100881 -133682591 + AT_rich Low_complexity Low_complexity 1 22 0 401 340 65 25 chr11 15101055 15101334 -133682138 - L1M4 LINE L1 -3633 2513 2224 266 276 29 35 chr11 15101857 15102027 -133681445 - L1ME1 LINE L1 -237 5929 5761 524 17 0 0 chr11 15102148 15102208 -133681264 + L1PA6 LINE L1 6093 6152 -2 27 29 0 0 chr11 15102283 15102317 -133681155 + AT_rich Low_complexity Low_complexity 1 34 0 1001 122 9 176 chr11 15102317 15102636 -133680836 - MLT1B LTR MaLR -124 257 1 1040 200 96 40 chr11 15102867 15103236 -133680236 + MSTC LTR MaLR 3 428 0 263 301 12 12 chr11 15103332 15103415 -133680057 - MLT1F1 LTR MaLR -381 168 86 21228 29 0 4 chr11 15104062 15107232 -133676240 + L1PA3 LINE L1 2983 6155 0 865 265 149 25 chr11 15107432 15108039 -133675433 - L2 LINE L2 0 3313 2650 335 244 124 96 chr11 15108033 15108324 -133675148 + L3 LINE CR1 1278 1576 -1 * 705 175 7 44 chr11 15108341 15108478 -133674994 + L2 LINE L2 3182 3313 0 222 351 184 0 chr11 15108480 15108594 -133674878 + MIR3 SINE MIR 66 200 -8 675 265 18 6 chr11 15109439 15109605 -133673867 - MIR SINE MIR -55 207 40 644 179 68 0 chr11 15112543 15112660 -133670812 - MER63 DNA MER1_type 0 1060 936 780 202 75 60 chr11 15112686 15112904 -133670568 - MER63D DNA MER1_type -631 430 217 2285 97 0 0 chr11 15112904 15113193 -133670279 + AluSx SINE Alu 1 289 -23 780 202 75 60 chr11 15113193 15113335 -133670137 - MER63D DNA MER1_type -844 217 3 265 292 0 0 chr11 15114435 15114500 -133668972 + GA-rich Low_complexity Low_complexity 2 66 0 183 80 0 0 chr11 15114556 15114581 -133668891 + (CGG)n Simple_repeat Simple_repeat 2 26 0 402 242 67 56 chr11 15115131 15115291 -133668181 + MIR SINE MIR 22 183 -62 215 219 78 31 chr11 15117395 15117459 -133666013 + L2 LINE L2 3205 3271 -1 2580 170 54 36 chr11 15118502 15118948 -133664524 + L1MA9 LINE L1 5712 6171 -141 198 0 0 0 chr11 15118948 15118970 -133664502 + (CA)n Simple_repeat Simple_repeat 1 22 0 2580 170 54 36 chr11 15118970 15119081 -133664391 + L1MA9 LINE L1 6171 6279 -33 198 342 150 0 chr11 15119310 15119430 -133664042 - MIR SINE MIR -1 261 124 21 57 0 0 chr11 15119746 15119781 -133663691 + AT_rich Low_complexity Low_complexity 1 35 0 417 230 174 43 chr11 15119934 15120095 -133663377 + MIR3 SINE MIR 16 197 -11 2179 164 101 42 chr11 15121600 15122077 -133661395 - MLT1D LTR MaLR 0 505 1 459 315 123 14 chr11 15123579 15123798 -133659674 + MIR SINE MIR 20 262 0 2584 147 41 14 chr11 15125007 15125422 -133658050 - MSTC LTR MaLR 0 428 3 305 77 19 39 chr11 15126504 15126556 -133656916 + L1PA12 LINE L1 10 60 -7521 1391 128 0 15 chr11 15126563 15126767 -133656705 - AluSx SINE Alu -105 207 7 2131 239 31 6 chr11 15126772 15127761 -133655711 - L1MB3 LINE L1 -352 5831 4818 2210 120 7 0 chr11 15127803 15128112 -133655360 + AluSp SINE Alu 1 311 -2 233 260 14 0 chr11 15128141 15128214 -133655258 - LTR50 LTR ERVL -714 81 8 1487 208 5 73 chr11 15128222 15128461 -133655011 - L1MA4 LINE L1 -140 6160 5961 1834 149 30 0 chr11 15128461 15128730 -133654742 - AluSx SINE Alu -35 277 1 1487 208 5 73 chr11 15128730 15128913 -133654559 - L1MA4 LINE L1 -339 5961 5767 471 230 109 12 chr11 15128934 15129099 -133654373 + HsTC2 DNA Tc2 1612 1792 -106 246 298 60 40 chr11 15129229 15129380 -133654092 - MER5B DNA MER1_type -24 154 1 943 214 36 0 chr11 15129485 15129681 -133653791 - MER6B DNA MER2_type -7 203 1 1485 143 5 5 chr11 15131565 15131788 -133651684 + AluSq SINE Alu 2 224 -89 1270 197 227 36 chr11 15131790 15132828 -133650644 + SATR1 Satellite Satellite 1 1235 -46 2269 176 108 24 chr11 15132866 15135800 -133647672 + SATR1 Satellite Satellite 1 3180 -132 24092 85 4 5 chr11 15135800 15140602 -133642870 + L1PA7 LINE L1 1677 6468 -1 330 268 147 13 chr11 15140643 15140800 -133642672 - HAL1b LINE L1 -153 1195 1018 3298 208 68 30 chr11 15141112 15142551 -133640921 - L1ME2 LINE L1 -13 6220 4726 1540 267 40 28 chr11 15142553 15143204 -133640268 - L1ME2 LINE L1 -1864 4351 3693 1653 289 39 55 chr11 15143238 15144288 -133639184 - L1ME2 LINE L1 -5325 1071 39 229 288 60 38 chr11 15144378 15144562 -133638910 - HAL1b LINE L1 -1086 262 75 331 309 71 8 chr11 15145003 15145129 -133638343 + L2 LINE L2 3012 3145 -168 2249 204 118 38 chr11 15146056 15146808 -133636664 + Charlie2 DNA MER1_type 1855 2688 -174 1750 140 0 23 chr11 15146808 15147072 -133636400 + AluSx SINE Alu 39 296 -16 2249 204 118 38 chr11 15147072 15147193 -133636279 + Charlie2 DNA MER1_type 2688 2798 -64 219 282 141 29 chr11 15147210 15147380 -133636092 + MIR SINE MIR 71 259 -3 455 283 181 13 chr11 15147697 15147934 -133635538 + L2 LINE L2 3037 3313 0 268 401 62 0 chr11 15147970 15148132 -133635340 + L3 LINE CR1 471 642 -935 682 182 34 62 chr11 15148671 15148847 -133634625 - MER3 DNA MER1_type -22 187 17 1900 120 0 0 chr11 15149531 15149790 -133633682 + AluSg SINE Alu 35 293 -17 272 299 28 73 chr11 15150209 15150386 -133633086 + L3 LINE CR1 754 922 -655 811 95 103 0 chr11 15150762 15150888 -133632584 - MER85 DNA T2_type 0 139 1 318 167 0 0 chr11 15150981 15151035 -133632437 + MLT1K LTR MaLR 517 570 -18 210 366 54 0 chr11 15151046 15151139 -133632333 + L3 LINE CR1 955 1052 -525 218 303 26 26 chr11 15151170 15151246 -133632226 + L3 LINE CR1 1148 1223 -354 248 317 58 19 chr11 15151301 15151405 -133632067 - L3 LINE CR1 -27 1550 1443 212 326 95 32 chr11 15151415 15151510 -133631962 - L2 LINE L2 -8 3264 3164 2962 164 57 66 chr11 15153905 15154602 -133628870 - LTR8 LTR ERV1 0 691 1 1294 213 84 0 chr11 15154602 15154875 -133628597 - HUERS-P1 LTR ERV1 0 6263 5968 638 219 171 0 chr11 15154977 15155141 -133628331 - LTR49-int LTR ERV1 -57 6274 6083 1814 176 53 48 chr11 15155214 15155629 -133627843 - LTR49-int LTR ERV1 -541 5790 5374 1408 77 0 0 chr11 15155630 15155799 -133627673 - AluYa5 SINE Alu -12 299 131 3734 156 24 74 chr11 15155799 15155994 -133627478 - LTR49-int LTR ERV1 -630 5633 5430 2003 128 14 3 chr11 15155994 15156290 -133627182 - AluY SINE Alu -10 301 3 3734 156 24 74 chr11 15156290 15156904 -133626568 - LTR49-int LTR ERV1 -833 5430 4865 6057 218 19 66 chr11 15156930 15158833 -133624639 + L1P3 LINE L1 1209 3779 -3805 2060 135 62 8 chr11 15158833 15159189 -133624283 + THE1C LTR MaLR 1 375 0 7741 132 175 6 chr11 15159189 15160541 -133622931 + THE1C-int LTR MaLR 1 1580 0 1795 170 62 14 chr11 15160541 15160899 -133622573 + THE1C LTR MaLR 1 375 0 6976 147 5 13 chr11 15160900 15162129 -133621343 + L1P3 LINE L1 3776 4994 -2590 6080 206 14 13 chr11 15212134 15213488 -133569984 - L1 LINE L1 -2343 5222 3868 2855 204 34 55 chr11 15213492 15213720 -133569752 - L1M4 LINE L1 -841 6326 6095 2386 74 3 3 chr11 15213720 15214019 -133569453 + AluY SINE Alu 1 299 -12 2855 204 34 55 chr11 15214019 15214610 -133568862 - L1M4 LINE L1 -1072 6095 5524 * 11049 189 21 57 chr11 15214595 15216675 -133566797 - L1M4 LINE L1 -4975 2193 202 2171 136 0 0 chr11 15216675 15216983 -133566489 - AluSx SINE Alu -4 308 1 11049 189 21 57 chr11 15216983 15217178 -133566294 - L1M4 LINE L1 -6966 202 1 642 118 36 9 chr11 15217224 15217334 -133566138 - L1 LINE L1 -4613 2952 2840 8206 124 7 3 chr11 15217348 15218561 -133564911 - HSMAR2 DNA Mariner -45 1257 41 16735 165 11 33 chr11 15218581 15218599 -133564873 - L1 LINE L1 -4702 2863 2846 3134 127 33 0 chr11 15218599 15219081 -133564391 - L1PA14 LINE L1 0 6161 5664 16735 165 11 33 chr11 15219081 15219584 -133563888 - L1 LINE L1 -4719 2846 2333 1657 26 0 0 chr11 15219584 15219777 -133563695 + L1PA4 LINE L1 5960 6152 -3 16735 165 11 33 chr11 15219777 15222090 -133561382 - L1 LINE L1 -5232 2333 91 277 259 52 35 chr11 15222512 15222628 -133560844 - LTR67 LTR ERVL 0 557 440 * 1104 272 108 46 chr11 15222609 15223046 -133560426 - MLT1F LTR MaLR -78 464 1 1458 196 7 123 chr11 15226178 15226591 -133556881 - MLT1A1 LTR MaLR 0 365 1 305 278 70 32 chr11 15226656 15226843 -133556629 - L1ME4a LINE L1 -260 5861 5668 469 265 117 25 chr11 15226925 15227087 -133556385 - L1ME4a LINE L1 -2167 5641 5465 552 325 24 0 chr11 15227158 15227367 -133556105 + L3 LINE CR1 1330 1543 -34 * 1319 252 52 31 chr11 15227366 15227810 -133555662 + L2 LINE L2 1176 1628 -1686 384 302 44 22 chr11 15227786 15227968 -133555504 + L2 LINE L2 2821 3006 -307 * 694 247 42 25 chr11 15227988 15228271 -133555201 + L1M4 LINE L1 2206 2493 -3653 617 301 177 15 chr11 15229114 15229526 -133553946 + LTR33 LTR ERVL 38 516 -5 192 274 63 32 chr11 15230158 15230253 -133553219 - L2 LINE L2 -86 3227 3130 211 326 118 52 chr11 15230349 15230732 -133552740 - L2 LINE L2 -501 2813 2406 1686 170 14 7 chr11 15231246 15231540 -133551932 + AluJb SINE Alu 2 297 -15 423 234 154 23 chr11 15231610 15231785 -133551687 + MIR SINE MIR 49 246 -16 705 274 5 5 chr11 15232360 15232546 -133550926 - MER5A DNA MER1_type -1 188 3 277 179 0 0 chr11 15233075 15233131 -133550341 + MIR3 SINE MIR 104 159 -49 699 181 5 96 chr11 15233217 15233405 -133550067 + MER63B DNA MER1_type 4 174 -262 326 263 42 0 chr11 15233408 15233503 -133549969 + MER5A DNA MER1_type 91 189 0 1399 187 6 63 chr11 15234127 15234443 -133549029 - AluJo SINE Alu -14 298 1 499 185 0 0 chr11 15234555 15234636 -133548836 + MER5A DNA MER1_type 2 82 -107 321 314 46 20 chr11 15235797 15235950 -133547522 + MIR SINE MIR 73 229 -33 436 209 75 45 chr11 15235965 15236099 -133547373 + MIR SINE MIR 74 211 -51 426 20 0 0 chr11 15236715 15236766 -133546706 + (TG)n Simple_repeat Simple_repeat 2 52 0 2869 50 3 3 chr11 15236961 15237304 -133546168 - HERVK11 LTR ERVK -4699 3254 2912 * 3069 84 40 3 chr11 15237298 15237875 -133545597 - HERVK11 LTR ERVK -5255 2698 1165 * 5036 149 35 57 chr11 15237873 15238871 -133544601 - HERVK11 LTR ERVK -6977 976 1 6986 103 20 24 chr11 15238871 15239957 -133543515 - MER11C LTR ERVK 0 1236 1 2416 102 25 0 chr11 15240545 15240907 -133542565 + L1MA1 LINE L1 5932 6302 0 385 204 21 11 chr11 15242482 15242575 -133540897 - MIR SINE MIR -70 138 45 271 228 22 0 chr11 15245878 15245970 -133537502 + CT-rich Low_complexity Low_complexity 2 95 0 638 216 66 56 chr11 15246510 15246723 -133536749 - MIR SINE MIR -1 261 47 593 233 121 102 chr11 15246852 15247422 -133536050 - L1MC5 LINE L1 -51 7910 7330 230 250 20 50 chr11 15247422 15247522 -133535950 - L2 LINE L2 -447 2867 2771 513 239 398 13 chr11 15247522 15248057 -133535415 - LTR50 LTR ERVL -2 793 53 4460 231 77 18 chr11 15248061 15248532 -133534940 - L1MC4 LINE L1 -743 5403 4961 1044 183 56 103 chr11 15248532 15248941 -133534531 + MLT1B LTR MaLR 1 390 0 4460 231 77 18 chr11 15248941 15250473 -133532999 - L1MC4 LINE L1 -1185 4961 4086 2186 231 76 11 chr11 15250483 15251008 -133532464 + MLT1F1 LTR MaLR 1 559 -8 320 246 34 51 chr11 15251010 15251128 -133532344 - L1MC4 LINE L1 -2093 4053 3938 1642 86 0 0 chr11 15251144 15251354 -133532118 + L1PA12 LINE L1 5927 6136 -32 2112 224 50 34 chr11 15251454 15252268 -133531204 - L1MC4 LINE L1 -2516 3630 2804 51 14 0 14 chr11 15252281 15252312 -133531160 + AT_rich Low_complexity Low_complexity 1 31 -37 1346 114 19 0 chr11 15252312 15252522 -133530950 - L1PB1 LINE L1 -5 6146 5933 51 14 0 14 chr11 15252522 15252559 -133530913 + AT_rich Low_complexity Low_complexity 31 68 0 4672 95 16 22 chr11 15252867 15252892 -133530580 + L1PB1 LINE L1 5464 5488 -663 2427 103 3 0 chr11 15252892 15253202 -133530270 + AluSp SINE Alu 1 311 -2 4672 95 16 22 chr11 15253202 15253868 -133529604 + L1PB1 LINE L1 5488 6151 0 744 228 20 0 chr11 15253869 15254066 -133529406 + L1M4 LINE L1 2320 2520 -3626 6510 190 51 21 chr11 15254091 15255705 -133527767 - L1P5 LINE L1 -674 5477 3814 467 128 37 18 chr11 15257342 15257451 -133526021 + GA-rich Low_complexity Low_complexity 3 113 0 2021 125 4 0 chr11 15258870 15259149 -133524323 - AluSx SINE Alu -32 280 1 401 308 112 9 chr11 15260729 15260943 -133522529 - MIR SINE MIR -1 261 26 243 63 0 0 chr11 15261735 15261770 -133521702 + MIR SINE MIR 112 145 -117 355 331 0 15 chr11 15261889 15262019 -133521453 + MIR SINE MIR 20 147 -61 358 349 51 53 chr11 15262116 15262675 -133520797 - L2 LINE L2 0 3272 2716 221 154 0 0 chr11 15262688 15262727 -133520745 - L2 LINE L2 0 3272 3234 26 64 0 0 chr11 15262868 15262915 -133520557 + AT_rich Low_complexity Low_complexity 1 47 0 3721 224 140 11 chr11 15262941 15264049 -133519423 - L1MC4 LINE L1 -104 7938 6688 239 268 110 0 chr11 15264122 15264204 -133519268 - L2 LINE L2 -222 3091 3001 1429 296 40 43 chr11 15264367 15265338 -133518134 + L2 LINE L2 2308 3272 0 252 328 40 8 chr11 15265343 15265468 -133518004 - L2 LINE L2 -861 2453 2325 210 247 13 26 chr11 15265929 15266006 -133517466 + (CTCA)n Simple_repeat Simple_repeat 1 76 0 790 293 159 11 chr11 15266795 15267437 -133516035 - L2 LINE L2 0 3313 2577 204 333 10 20 chr11 15267784 15267883 -133515589 - L2 LINE L2 -214 3058 2961 254 273 13 13 chr11 15268437 15268514 -133514958 - MIR3 SINE MIR -42 166 90 1500 132 0 0 chr11 15269714 15269927 -133513545 + AluSg/x SINE Alu 95 307 -5 474 288 20 14 chr11 15269927 15270073 -133513399 + MIR3 SINE MIR 48 194 -14 499 224 21 36 chr11 15270316 15270484 -133512988 - MIR SINE MIR -62 146 25 825 266 136 26 chr11 15271123 15271706 -133511766 - L1MEd LINE L1 -1278 4851 4205 2511 264 104 37 chr11 15271929 15273870 -133509602 - L1MEd LINE L1 -1915 4214 2119 21 0 0 0 chr11 15273916 15273937 -133509535 + AT_rich Low_complexity Low_complexity 1 21 0 1781 195 0 3 chr11 15274192 15274494 -133508978 - AluJb SINE Alu -11 301 1 915 279 127 34 chr11 15274553 15275343 -133508129 - L1MEd LINE L1 -4612 1698 689 228 294 0 15 chr11 15275355 15275423 -133508049 - L1MEd LINE L1 -5589 530 464 285 313 50 12 chr11 15275668 15275828 -133507644 - L1MEd LINE L1 -5943 176 11 454 221 123 26 chr11 15275957 15276111 -133507361 + MIR SINE MIR 78 246 -16 553 193 72 66 chr11 15276111 15276277 -133507195 - MER104 DNA Tc2 0 180 14 295 292 204 0 chr11 15276609 15276722 -133506750 - MLT1J2 LTR MaLR -14 436 301 279 0 0 0 chr11 15276736 15276767 -133506705 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 15276859 15276890 -133506582 + AT_rich Low_complexity Low_complexity 1 31 0 252 245 0 0 chr11 15277135 15277184 -133506288 - L2 LINE L2 -16 3256 3208 753 190 16 174 chr11 15277652 15277968 -133505504 - MLT1A1 LTR MaLR -2 363 98 16088 114 23 10 chr11 15277968 15280335 -133503137 - Tigger1 DNA MER2_type 0 2418 21 394 139 38 25 chr11 15280333 15280412 -133503060 - MLT1A1 LTR MaLR -348 80 1 * 267 207 284 9 chr11 15280674 15280790 -133502682 - MIR SINE MIR -65 197 50 397 279 206 20 chr11 15281476 15281680 -133501792 - MIR SINE MIR -6 256 15 1703 179 26 19 chr11 15282484 15282792 -133500680 - AluJo SINE Alu -2 310 1 638 188 87 7 chr11 15282830 15282968 -133500504 + MIR SINE MIR 104 252 -10 196 229 0 0 chr11 15283855 15283903 -133499569 + L2 LINE L2 2712 2759 -555 209 271 60 60 chr11 15284011 15284177 -133499295 + L2 LINE L2 2918 3083 -189 596 26 65 0 chr11 15284730 15284807 -133498665 - L1PA5 LINE L1 -8 6146 6065 502 313 102 24 chr11 15285284 15285667 -133497805 - L2 LINE L2 -337 2977 2565 291 274 27 0 chr11 15285964 15286037 -133497435 - LTR67 LTR ERVL -386 171 97 238 193 121 0 chr11 15286158 15286241 -133497231 - MIR SINE MIR -60 202 110 247 269 183 86 chr11 15287064 15287261 -133496211 - MIR SINE MIR -27 235 20 378 222 0 12 chr11 15287975 15288056 -133495416 + MIR SINE MIR 183 262 0 275 241 135 15 chr11 15289342 15289475 -133493997 - MIR SINE MIR 0 262 114 287 308 154 8 chr11 15289503 15289633 -133493839 - L2 LINE L2 -2 3270 3122 883 284 135 18 chr11 15290099 15290483 -133492989 - MLT1L LTR MaLR -8 607 179 494 170 47 28 chr11 15290634 15290740 -133492732 + MER53 DNA DNA 1 108 -81 408 292 71 13 chr11 15292748 15292902 -133490570 + MIR SINE MIR 13 175 -87 1406 134 124 72 chr11 15293006 15293296 -133490176 + MER1B DNA MER1_type 35 339 0 1047 288 86 10 chr11 15294011 15294268 -133489204 - LTR16A LTR ERVL -1 449 146 1000 216 138 27 chr11 15294268 15294601 -133488871 + MER93b LTR ERV1 1 370 -3 1047 288 86 10 chr11 15294601 15294760 -133488712 - LTR16A LTR ERVL -304 146 1 221 286 43 0 chr11 15294760 15294830 -133488642 - MIR SINE MIR -76 132 60 236 327 0 36 chr11 15294960 15295070 -133488402 - L2 LINE L2 -9 3263 3158 336 238 29 9 chr11 15295643 15295748 -133487724 - MIR3 SINE MIR -3 205 99 198 209 0 0 chr11 15296095 15296138 -133487334 + L2 LINE L2 3271 3313 0 516 228 152 24 chr11 15296502 15296685 -133486787 + MIR3 SINE MIR 2 205 -3 193 377 50 2 chr11 15297050 15297174 -133486298 + L2 LINE L2 2850 2976 -296 267 354 44 0 chr11 15297345 15297458 -133486014 - L2 LINE L2 -3 3310 3193 454 277 183 22 chr11 15298305 15298529 -133484943 + MIR SINE MIR 3 262 0 349 283 10 30 chr11 15298514 15298613 -133484859 + MIR SINE MIR 57 153 -109 * 190 250 161 36 chr11 15299844 15299956 -133483516 + L2 LINE L2 2376 2501 -813 327 257 108 20 chr11 15300316 15300464 -133483008 + L2 LINE L2 2924 3084 -188 500 286 148 0 chr11 15300515 15300704 -133482768 + MIR SINE MIR 11 227 -35 189 0 0 0 chr11 15300766 15300787 -133482685 + (T)n Simple_repeat Simple_repeat 1 21 0 231 279 59 0 chr11 15300805 15300873 -133482599 + L2 LINE L2 3199 3270 -43 775 336 4 0 chr11 15301522 15301781 -133481691 + MIR SINE MIR 2 261 -1 240 287 92 73 chr11 15301971 15302243 -133481229 - L2 LINE L2 -77 3195 2919 240 320 16 8 chr11 15302308 15302430 -133481042 - MIR3 SINE MIR -72 136 14 286 259 265 16 chr11 15302749 15302938 -133480534 + MIR SINE MIR 14 249 -13 1015 289 33 43 chr11 15304072 15304632 -133478840 + L2 LINE L2 2760 3311 -2 232 297 45 0 chr11 15305001 15305112 -133478360 - L1MEc LINE L1 -4739 1657 1542 363 295 80 74 chr11 15305233 15305482 -133477990 - HAL1b LINE L1 -995 353 100 2073 129 16 13 chr11 15305482 15305792 -133477680 - AluY SINE Alu 0 311 1 363 295 80 74 chr11 15305792 15305881 -133477591 - HAL1b LINE L1 -1248 100 13 2071 122 116 3 chr11 15306625 15306952 -133476520 + THE1B LTR MaLR 1 364 0 683 259 5 11 chr11 15307287 15307472 -133476000 - MIR SINE MIR -58 204 21 186 167 0 48 chr11 15307889 15307931 -133475541 + L2 LINE L2 3180 3219 -94 196 243 215 28 chr11 15308600 15308707 -133474765 - L2 LINE L2 -5 3308 3182 397 314 186 0 chr11 15308731 15308941 -133474531 + MIR SINE MIR 14 262 0 21 0 0 0 chr11 15308946 15308967 -133474505 + AT_rich Low_complexity Low_complexity 1 21 0 1660 137 0 80 chr11 15309373 15309687 -133473785 - AluJo SINE Alu -23 289 1 2373 100 15 6 chr11 15310002 15310355 -133473117 - L1PA10 LINE L1 0 6168 5823 467 282 25 6 chr11 15310464 15310627 -133472845 - MIR SINE MIR -6 256 91 836 211 22 26 chr11 15310627 15310855 -133472617 + L1ME3A LINE L1 5944 6170 0 200 250 0 0 chr11 15310871 15310915 -133472557 - MIR SINE MIR -158 104 61 1571 102 4 35 chr11 15311421 15311676 -133471796 - AluSg/x SINE Alu 0 312 78 3221 175 8 19 chr11 15311676 15311837 -133471635 - L1MD3 LINE L1 -27 7968 7807 1491 203 81 9 chr11 15311837 15312158 -133471314 + MER2 DNA MER2_type 1 344 0 3221 175 8 19 chr11 15312158 15312618 -133470854 - L1MD3 LINE L1 -188 7807 7354 278 332 19 42 chr11 15314493 15314707 -133468765 - L2 LINE L2 -228 3044 2836 375 314 66 40 chr11 15314954 15315228 -133468244 + L1MC4a LINE L1 5679 5959 -1849 228 228 0 0 chr11 15315506 15315563 -133467909 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 958 282 41 43 chr11 15315905 15316461 -133467011 + L2 LINE L2 2759 3311 -2 336 230 108 40 chr11 15316942 15317090 -133466382 - L1ME4a LINE L1 -1 6120 5963 553 163 0 0 chr11 15317283 15317369 -133466103 - FLAM SINE Alu -18 125 40 362 211 67 58 chr11 15318135 15318239 -133465233 - MIR SINE MIR -10 252 148 729 258 72 0 chr11 15318253 15318447 -133465025 + MIR SINE MIR 13 220 -42 308 348 22 22 chr11 15318464 15318599 -133464873 - MIR SINE MIR -112 150 16 216 376 0 17 chr11 15319406 15319584 -133463888 + (CA)n Simple_repeat Simple_repeat 2 176 0 467 252 16 0 chr11 15320513 15320640 -133462832 - MIR3 SINE MIR -15 193 65 288 278 123 49 chr11 15320956 15321162 -133462310 + MIR SINE MIR 18 256 -6 2236 84 0 7 chr11 15321879 15322204 -133461268 + AluY SINE Alu 1 323 0 278 227 40 27 chr11 15323202 15323277 -133460195 + L2 LINE L2 3204 3279 -34 3672 222 99 44 chr11 15324709 15325093 -133458379 + Charlie2a DNA MER1_type 1 363 -2499 2324 108 0 19 chr11 15325093 15325409 -133458063 + AluSp SINE Alu 1 310 -3 3672 222 99 44 chr11 15325409 15325462 -133458010 + Charlie2a DNA MER1_type 363 412 -2450 246 62 0 0 chr11 15325462 15325494 -133457978 + (TG)n Simple_repeat Simple_repeat 2 33 0 3672 222 99 44 chr11 15325494 15326418 -133457054 + Charlie2a DNA MER1_type 412 1284 -1578 2298 113 0 0 chr11 15326418 15326719 -133456753 - AluSc SINE Alu -6 303 3 3672 222 99 44 chr11 15326719 15327974 -133455498 + Charlie2a DNA MER1_type 1284 2846 -16 2032 228 41 37 chr11 15328924 15329412 -133454060 - MLT1H1 LTR MaLR -65 490 1 504 241 373 0 chr11 15329966 15330202 -133453270 - LTR16B LTR ERVL -67 397 74 330 184 195 0 chr11 15330464 15330551 -133452921 + MIR3 SINE MIR 86 189 -19 561 207 0 27 chr11 15331391 15331553 -133451919 - FLAM_A SINE Alu 0 166 8 248 157 20 0 chr11 15331561 15331612 -133451860 - MIR SINE MIR -108 154 103 2634 30 3 7 chr11 15333006 15333307 -133450165 - AluY SINE Alu -11 300 1 342 274 98 0 chr11 15334525 15334627 -133448845 + L2 LINE L2 3155 3266 -6 407 291 56 28 chr11 15334977 15335156 -133448316 - MIR SINE MIR -70 192 9 534 220 23 0 chr11 15335158 15335290 -133448182 - MER69 DNA AcHobo -1 2525 2391 4819 38 5 3 chr11 15335323 15335903 -133447569 - L1PA5 LINE L1 -3 6151 5571 536 279 25 12 chr11 15335903 15336064 -133447408 - MER69 DNA AcHobo -844 382 220 340 306 53 41 chr11 15336361 15336531 -133446941 + MER5A DNA MER1_type 17 188 -1 372 284 135 45 chr11 15336620 15336842 -133446630 - MIR SINE MIR -3 259 18 476 228 188 0 chr11 15336906 15337055 -133446417 - MER5B DNA MER1_type 0 178 2 271 312 104 29 chr11 15337740 15337913 -133445559 + MIR3 SINE MIR 8 193 -15 303 298 63 13 chr11 15338240 15338398 -133445074 - MIR SINE MIR -1 261 96 705 283 106 4 chr11 15338725 15338962 -133444510 - MIR SINE MIR 0 262 2 501 306 51 19 chr11 15339039 15339255 -133444217 - MIR SINE MIR -24 238 16 216 111 0 0 chr11 15340680 15340716 -133442756 + (TA)n Simple_repeat Simple_repeat 2 37 0 261 342 171 0 chr11 15341127 15341244 -133442228 + L2 LINE L2 3136 3272 0 275 207 0 35 chr11 15341556 15341614 -133441858 + L2 LINE L2 3231 3286 -27 345 24 0 0 chr11 15342182 15342224 -133441248 + (CA)n Simple_repeat Simple_repeat 1 42 0 202 286 13 39 chr11 15342248 15342325 -133441147 + MIR SINE MIR 84 158 -104 348 302 0 0 chr11 15344103 15344199 -133439273 - MIR SINE MIR -57 151 56 317 345 9 26 chr11 15344292 15344405 -133439067 - MIR SINE MIR -58 150 40 678 269 48 0 chr11 15345009 15345195 -133438277 - MIR SINE MIR -19 243 49 186 261 0 22 chr11 15345392 15345438 -133438034 - MIR SINE MIR -1 261 217 267 254 0 45 chr11 15345578 15345645 -133437827 - MIR SINE MIR -62 146 83 741 191 30 8 chr11 15345652 15345783 -133437689 - L2 LINE L2 0 3313 3180 1526 213 37 19 chr11 15345783 15346107 -133437365 + MER58B DNA MER1_type 10 339 -2 524 274 110 38 chr11 15346149 15346386 -133437086 - MIR SINE MIR 0 262 9 497 246 0 0 chr11 15347149 15347263 -133436209 + FLAM_C SINE Alu 27 140 -3 209 258 142 71 chr11 15347345 15347500 -133435972 + MIR SINE MIR 2 167 -95 289 260 162 9 chr11 15347723 15347849 -133435623 - MIR SINE MIR -56 152 9 361 333 49 7 chr11 15348746 15348890 -133434582 + MIR SINE MIR 93 242 -20 341 261 145 29 chr11 15351235 15351373 -133432099 + MIR SINE MIR 46 199 -63 401 273 53 38 chr11 15351731 15351863 -133431609 - MIR3 SINE MIR -39 169 36 316 313 10 10 chr11 15352197 15352296 -133431176 + MIR SINE MIR 38 136 -72 468 0 0 0 chr11 15352537 15352589 -133430883 + (TG)n Simple_repeat Simple_repeat 1 52 0 2964 243 71 48 chr11 15353260 15354150 -133429322 - L1MC/D LINE L1 -704 5458 4543 1939 83 6 102 chr11 15354150 15354474 -133428998 - AluSx SINE Alu -19 293 1 2964 243 71 48 chr11 15354474 15355000 -133428472 - L1MC/D LINE L1 -1619 4543 4030 201 279 114 0 chr11 15355000 15355079 -133428393 - MIR SINE MIR -106 156 69 256 62 0 0 chr11 15355228 15355260 -133428212 + Alu SINE Alu 30 61 -238 437 92 0 0 chr11 15355260 15355325 -133428147 + Alu SINE Alu 242 306 -6 423 268 32 57 chr11 15355332 15355455 -133428017 + MER5B DNA MER1_type 59 178 0 180 221 235 15 chr11 15355501 15355569 -133427903 - L3 LINE CR1 -1126 451 369 1724 195 65 34 chr11 15356693 15357077 -133426395 + MSTD LTR MaLR 1 396 0 379 272 26 9 chr11 15357539 15357653 -133425819 + MIR SINE MIR 19 134 -74 180 328 15 15 chr11 15357651 15357718 -133425754 - L2 LINE L2 -6 3266 3200 * 226 156 22 0 chr11 15358419 15358464 -133425008 + CT-rich Low_complexity Low_complexity 1 46 0 268 274 41 0 chr11 15358513 15358586 -133424886 + L2 LINE L2 3188 3263 -9 246 284 168 0 chr11 15358938 15359033 -133424439 - MIR SINE MIR -28 234 124 323 281 156 22 chr11 15359035 15359090 -133424382 - MIR SINE MIR -86 176 130 2478 98 59 8 chr11 15359090 15359447 -133424025 - THE1C LTR MaLR 0 375 1 323 281 156 22 chr11 15359447 15359526 -133423946 - MIR SINE MIR -132 130 24 1246 296 54 18 chr11 15359816 15360374 -133423098 + L1ME3A LINE L1 5374 5951 -219 201 74 0 0 chr11 15360604 15360631 -133422841 + (TA)n Simple_repeat Simple_repeat 1 27 0 329 333 45 0 chr11 15361116 15361293 -133422179 - MER5A DNA MER1_type -1 188 4 856 261 39 39 chr11 15362542 15362799 -133420673 + MIR SINE MIR 2 258 -4 329 269 280 5 chr11 15363014 15363200 -133420272 - MIR SINE MIR -6 256 20 255 306 0 0 chr11 15364947 15365009 -133418463 - MIR SINE MIR -66 142 81 485 225 108 96 chr11 15365030 15365279 -133418193 - MER102b DNA MER1_type 0 341 90 486 301 78 31 chr11 15366047 15366240 -133417232 + MIR SINE MIR 20 221 -41 775 336 72 24 chr11 15367107 15367482 -133415990 + L2 LINE L2 2921 3313 0 356 222 114 66 chr11 15367495 15367662 -133415810 + MIR SINE MIR 45 219 -43 196 321 125 18 chr11 15369086 15369198 -133414274 - MIR SINE MIR -86 176 53 412 360 54 9 chr11 15369281 15369503 -133413969 + MIR SINE MIR 31 262 0 608 303 61 14 chr11 15369940 15370175 -133413297 + MIR SINE MIR 8 250 -12 185 143 0 0 chr11 15370251 15370279 -133413193 + MIR SINE MIR 122 149 -113 828 251 28 24 chr11 15371455 15371666 -133411806 + MIR SINE MIR 5 216 -46 2720 137 31 21 chr11 15371799 15371840 -133411632 - MSTA LTR MaLR 0 428 389 1478 186 18 14 chr11 15371840 15371948 -133411524 + AluJb SINE Alu 24 130 -182 654 35 53 0 chr11 15371948 15372062 -133411410 + (TA)n Simple_repeat Simple_repeat 1 120 0 1478 186 18 14 chr11 15372062 15372232 -133411240 + AluJb SINE Alu 130 303 -9 2720 137 31 21 chr11 15372232 15372614 -133410858 - MSTA LTR MaLR -39 389 1 1636 106 18 0 chr11 15373318 15373544 -133409928 + MER30 DNA MER1_type 1 230 0 674 209 0 0 chr11 15374440 15374579 -133408893 - FLAM_A SINE Alu 0 139 1 2262 208 65 9 chr11 15374604 15375065 -133408407 + MLT1D LTR MaLR 19 505 0 274 302 151 0 chr11 15375065 15375171 -133408301 - MIR SINE MIR -139 123 2 337 53 18 35 chr11 15375716 15375773 -133407699 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 27 29 0 0 chr11 15376652 15376686 -133406786 + AT_rich Low_complexity Low_complexity 1 34 0 2256 92 3 0 chr11 15377795 15378100 -133405372 + AluSx SINE Alu 1 306 -6 244 278 45 68 chr11 15378186 15378362 -133405110 - L2 LINE L2 -98 3215 3044 384 273 56 28 chr11 15379122 15379265 -133404207 - L2 LINE L2 -10 3262 3116 661 213 255 5 chr11 15379306 15379494 -133403978 + MIR SINE MIR 7 241 -21 338 240 31 0 chr11 15379516 15379612 -133403860 - LTR33 LTR ERVL -20 501 403 485 254 158 46 chr11 15379715 15379975 -133403497 - MER102a DNA MER1_type -4 326 38 512 310 80 11 chr11 15380510 15380697 -133402775 + MIR SINE MIR 48 247 -15 418 253 11 0 chr11 15381359 15381533 -133401939 + (TTCA)n Simple_repeat Simple_repeat 3 178 0 440 299 42 7 chr11 15381554 15381698 -133401774 - L2 LINE L2 0 3313 3165 241 296 22 82 chr11 15382620 15382755 -133400717 + MIR SINE MIR 80 206 -56 217 317 98 12 chr11 15383441 15383523 -133399949 + MIR SINE MIR 17 105 -103 440 248 9 18 chr11 15383530 15383639 -133399833 - L2 LINE L2 0 3313 3206 1651 207 64 24 chr11 15383671 15384125 -133399347 - Charlie4a DNA MER1_type -7 501 30 268 292 79 0 chr11 15384299 15384388 -133399084 + L3 LINE CR1 1207 1302 -275 257 324 16 22 chr11 15385700 15385876 -133397596 + CT-rich Low_complexity Low_complexity 1 174 0 310 269 115 60 chr11 15385880 15386062 -133397410 - L1MDa LINE L1 -5119 1421 1230 341 324 37 0 chr11 15386630 15386738 -133396734 + MIR SINE MIR 81 192 -70 547 254 42 88 chr11 15387016 15387276 -133396196 - L2 LINE L2 0 3272 3025 277 116 0 0 chr11 15387332 15387375 -133396097 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 824 183 0 144 chr11 15388860 15389068 -133394404 - MER63A DNA MER1_type 0 210 33 419 266 112 51 chr11 15389255 15389469 -133394003 - MIR SINE MIR -31 231 5 243 294 44 66 chr11 15389588 15389724 -133393748 - MIR3 SINE MIR -40 168 36 207 0 0 0 chr11 15389755 15389778 -133393694 + (TA)n Simple_repeat Simple_repeat 1 23 0 3287 195 23 10 chr11 15389778 15390529 -133392943 - Charlie1a DNA MER1_type -652 803 1 211 193 48 96 chr11 15390529 15390612 -133392860 - MIR3 SINE MIR -48 160 82 876 316 99 15 chr11 15390789 15391245 -133392227 - LTR33 LTR ERVL 0 521 28 437 253 21 72 chr11 15392177 15392405 -133391067 + MIR SINE MIR 3 214 -48 216 343 162 24 chr11 15392463 15392673 -133390799 - L3 LINE CR1 -23 1554 1316 495 257 83 0 chr11 15392691 15392737 -133390735 - MLT1F1 LTR MaLR -7 535 494 267 79 0 0 chr11 15392737 15392775 -133390697 + (CAA)n Simple_repeat Simple_repeat 2 39 0 495 257 83 0 chr11 15392775 15392872 -133390600 - MLT1F1 LTR MaLR -48 494 380 1311 223 18 55 chr11 15392883 15393211 -133390261 + L1MB7 LINE L1 14 329 -6213 * 4120 195 48 7 chr11 15393209 15394424 -133389048 + L1MB7 LINE L1 5421 6682 0 1670 234 43 13 chr11 15394427 15394824 -133388648 - MLT1F1 LTR MaLR -158 409 1 21 0 0 0 chr11 15395654 15395675 -133387797 + AT_rich Low_complexity Low_complexity 1 21 0 293 200 184 73 chr11 15396064 15396251 -133387221 - MIR SINE MIR -13 249 38 1089 197 86 4 chr11 15396476 15396710 -133386762 + MIR SINE MIR 5 257 -5 252 341 148 0 chr11 15396799 15396934 -133386538 - MIR3 SINE MIR -6 202 48 545 279 137 18 chr11 15396965 15397184 -133386288 - MIR SINE MIR -14 248 4 354 123 0 0 chr11 15397730 15397787 -133385685 + (TG)n Simple_repeat Simple_repeat 2 58 0 2229 101 10 0 chr11 15398513 15398809 -133384663 - AluSq SINE Alu -14 299 1 2131 172 86 32 chr11 15399524 15399967 -133383505 + MLT1C LTR MaLR 1 467 0 348 364 8 8 chr11 15401700 15401832 -133381640 - MIR SINE MIR -108 154 23 466 297 126 7 chr11 15402431 15402655 -133380817 + MIR SINE MIR 19 262 0 286 296 11 0 chr11 15403008 15403096 -133380376 + MER117 DNA MER1_type 1 89 -108 241 295 223 9 chr11 15403123 15403235 -133380237 + MIR SINE MIR 2 137 -125 260 284 157 10 chr11 15403574 15403676 -133379796 - MIR SINE MIR -123 139 23 975 288 98 61 chr11 15404477 15404677 -133378795 + L1M4 LINE L1 838 1029 -5615 318 26 0 0 chr11 15404677 15404716 -133378756 + (CA)n Simple_repeat Simple_repeat 2 40 0 975 288 98 61 chr11 15404716 15405590 -133377882 + L1M4 LINE L1 1029 1938 -4706 2265 200 48 58 chr11 15405608 15406147 -133377325 - MLT1E2 LTR MaLR -3 623 90 915 201 81 100 chr11 15406162 15406471 -133377001 - MLT1E2 LTR MaLR -234 392 90 1232 180 54 138 chr11 15406486 15406914 -133376558 - MLT1E2 LTR MaLR -234 392 1 326 305 30 18 chr11 15406938 15407102 -133376370 + L1M4 LINE L1 2004 2169 -4475 589 280 113 16 chr11 15407413 15407792 -133375680 - L1MEc LINE L1 -2582 3633 3218 640 279 106 33 chr11 15408991 15409350 -133374122 - L1MEc LINE L1 -4616 1780 1396 1807 228 34 39 chr11 15409351 15409942 -133373530 - L1MEc LINE L1 -5117 1279 692 1348 241 35 22 chr11 15409944 15410313 -133373159 - L1MEc LINE L1 -5995 401 28 758 320 40 17 chr11 15411759 15412059 -133371413 + MLT1I LTR MaLR 72 378 -31 459 278 119 7 chr11 15412263 15412414 -133371058 - MLT1J2 LTR MaLR -19 431 264 466 269 39 32 chr11 15412440 15412596 -133370876 - MLT1J1 LTR MaLR -287 159 3 644 175 0 0 chr11 15412694 15412797 -133370675 - AluSp/q SINE Alu -9 304 202 506 90 0 13 chr11 15413220 15413298 -133370174 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 210 143 0 0 chr11 15413307 15413342 -133370130 + (T)n Simple_repeat Simple_repeat 1 35 0 316 306 86 105 chr11 15413958 15414262 -133369210 + L2 LINE L2 2971 3268 -4 2145 48 0 4 chr11 15414902 15415175 -133368297 - L1P LINE L1 -1015 5131 4860 236 328 0 0 chr11 15415222 15415289 -133368183 + L2 LINE L2 3186 3252 -20 624 282 59 56 chr11 15415332 15415637 -133367835 - L2 LINE L2 0 3313 3008 299 293 0 0 chr11 15415648 15415723 -133367749 - L2 LINE L2 -3 3269 3195 229 267 40 0 chr11 15415805 15415880 -133367592 + GA-rich Low_complexity Low_complexity 2 79 0 2112 196 8 6 chr11 15415886 15416249 -133367223 - MLT1A1 LTR MaLR -1 364 1 3042 196 31 19 chr11 15416249 15416831 -133366641 - MLT1A1-int LTR MaLR 0 1735 1147 2507 78 0 3 chr11 15416973 15417281 -133366191 - AluY SINE Alu -4 307 1 1109 224 0 9 chr11 15417323 15417537 -133365935 - MER20 DNA MER1_type 0 219 8 250 203 141 0 chr11 15417684 15417748 -133365724 + L2 LINE L2 3200 3272 0 611 182 191 120 chr11 15418881 15419090 -133364382 - MER58A DNA MER1_type 0 224 1 240 295 74 49 chr11 15419196 15419318 -133364154 - L2 LINE L2 -6 3266 3142 313 269 92 8 chr11 15420613 15420732 -133362740 - MIR SINE MIR -71 191 63 1128 254 121 33 chr11 15421264 15421752 -133361720 + MLT1H LTR MaLR 7 537 -12 645 233 56 70 chr11 15421817 15422032 -133361440 - MIR SINE MIR -11 251 40 374 263 119 8 chr11 15422256 15422374 -133361098 - MIR SINE MIR -108 154 24 263 292 53 26 chr11 15422481 15422594 -133360878 - L2 LINE L2 -19 3253 3138 644 216 172 30 chr11 15422835 15423131 -133360341 + L1ME4a LINE L1 5485 5822 -299 359 250 118 64 chr11 15423146 15423350 -133360122 + L1ME4a LINE L1 5859 6073 -48 24 0 0 0 chr11 15423421 15423445 -133360027 + AT_rich Low_complexity Low_complexity 1 24 0 434 308 98 13 chr11 15423673 15423897 -133359575 + MIR SINE MIR 20 262 0 565 312 7 7 chr11 15424285 15424439 -133359033 - MER117 DNA MER1_type -43 154 1 225 299 102 48 chr11 15424582 15424769 -133358703 + MER117 DNA MER1_type 1 197 0 243 200 0 0 chr11 15425097 15425142 -133358330 + L2 LINE L2 3265 3309 -4 203 341 35 12 chr11 15425814 15425899 -133357573 - L3 LINE CR1 -3 1574 1488 237 355 76 42 chr11 15426055 15426317 -133357155 - L3 LINE CR1 -222 1355 1085 207 211 0 0 chr11 15426761 15426799 -133356673 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 181 200 200 40 chr11 15426812 15426862 -133356610 - L2 LINE L2 -60 3212 3155 13725 26 3 0 chr11 15428003 15430292 -133353180 - L1PA4 LINE L1 0 6155 3862 476 262 0 34 chr11 15430593 15430742 -133352730 + L2 LINE L2 2386 2529 -785 742 295 30 13 chr11 15431555 15431860 -133351612 + L1ME3A LINE L1 5653 5962 -208 409 295 84 59 chr11 15432098 15432161 -133351311 + MLT1I LTR MaLR 80 140 -269 402 21 0 0 chr11 15432161 15432208 -133351264 + (TG)n Simple_repeat Simple_repeat 2 48 0 409 295 84 59 chr11 15432208 15432466 -133351006 + MLT1I LTR MaLR 140 409 0 218 307 27 0 chr11 15433789 15433864 -133349608 + CT-rich Low_complexity Low_complexity 3 79 0 184 155 17 17 chr11 15434710 15434768 -133348704 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 483 230 69 141 chr11 15434790 15435005 -133348467 + L3 LINE CR1 799 1028 -549 968 245 32 12 chr11 15435005 15435258 -133348214 - MIR SINE MIR 0 262 5 483 230 69 141 chr11 15435258 15435547 -133347925 + L3 LINE CR1 1028 1267 -310 440 234 69 21 chr11 15435872 15436017 -133347455 - L1ME4a LINE L1 -15 6106 5955 337 315 124 42 chr11 15436356 15436766 -133346706 - L2 LINE L2 0 3272 2829 1439 221 25 34 chr11 15436769 15437122 -133346350 + L1ME3 LINE L1 5813 6162 0 242 286 0 0 chr11 15437153 15437209 -133346263 + MER5C DNA MER1_type 6 61 -263 190 272 54 54 chr11 15437420 15437456 -133346016 - MIR SINE MIR -122 140 105 1684 202 48 22 chr11 15437456 15437812 -133345660 + MLT1A1 LTR MaLR 1 365 0 190 272 54 54 chr11 15437812 15437867 -133345605 - MIR SINE MIR -156 106 49 348 309 45 28 chr11 15438011 15438189 -133345283 - MIR SINE MIR -1 261 81 260 291 69 80 chr11 15438740 15438915 -133344557 + MIR SINE MIR 23 195 -67 438 20 0 0 chr11 15439079 15439130 -133344342 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 340 72 26 chr11 15440648 15440992 -133342480 - L2 LINE L2 -182 3090 2734 257 261 96 17 chr11 15441032 15441147 -133342325 - L1ME4a LINE L1 -23 6098 5975 205 294 0 15 chr11 15441216 15441284 -133342188 + (CA)n Simple_repeat Simple_repeat 2 68 0 1237 180 0 5 chr11 15441284 15441495 -133341977 + MER2 DNA MER2_type 1 210 -135 22 70 0 0 chr11 15441496 15441539 -133341933 + AT_rich Low_complexity Low_complexity 1 43 0 605 278 81 56 chr11 15441662 15441896 -133341576 - L1P4 LINE L1 -297 5824 5591 214 198 57 113 chr11 15441903 15442009 -133341463 - L2 LINE L2 -569 2745 2646 1827 104 43 43 chr11 15442246 15442575 -133340897 - AluY SINE Alu 0 329 1 254 305 84 0 chr11 15443589 15443684 -133339788 - L2 LINE L2 -16 3256 3154 210 315 50 120 chr11 15445131 15445331 -133338141 - L2 LINE L2 -81 3191 3006 979 219 38 0 chr11 15445332 15445542 -133337930 - MER58A DNA MER1_type -1 223 6 702 260 52 16 chr11 15445636 15445828 -133337644 - MIR SINE MIR -59 203 5 352 301 24 32 chr11 15447142 15447265 -133336207 - MIR SINE MIR -66 142 21 701 261 10 35 chr11 15447870 15448069 -133335403 - MER63A DNA MER1_type -16 194 1 429 319 33 14 chr11 15448069 15448248 -133335224 - MIR SINE MIR -64 144 4 318 354 20 14 chr11 15448349 15448496 -133334976 - MIR SINE MIR -45 217 70 288 319 50 50 chr11 15449243 15449403 -133334069 + MIR SINE MIR 62 221 -41 21 0 0 0 chr11 15449742 15449763 -133333709 + AT_rich Low_complexity Low_complexity 1 21 0 191 349 0 0 chr11 15450094 15450157 -133333315 + MIR SINE MIR 190 252 -10 312 293 103 32 chr11 15451080 15451265 -133332207 + MIR3 SINE MIR 3 191 -69 2520 61 0 23 chr11 15452398 15452708 -133330764 + AluY SINE Alu 1 303 -8 321 203 14 14 chr11 15453577 15453646 -133329826 - MIR SINE MIR -73 135 67 775 252 58 19 chr11 15453647 15453853 -133329619 + MIR SINE MIR 3 216 -46 198 103 0 0 chr11 15453902 15453931 -133329541 + (TCC)n Simple_repeat Simple_repeat 2 30 0 264 255 235 73 chr11 15454523 15454727 -133328745 + L3 LINE CR1 1328 1564 -13 319 278 183 6 chr11 15455007 15455176 -133328296 + MIR SINE MIR 21 219 -43 295 228 76 0 chr11 15455634 15455713 -133327759 + MIR SINE MIR 101 185 -77 21 57 0 0 chr11 15455823 15455858 -133327614 + AT_rich Low_complexity Low_complexity 1 35 0 532 219 0 83 chr11 15556040 15556245 -133227227 + L1MA6 LINE L1 2789 2976 -3170 * 1751 136 9 19 chr11 15556240 15556556 -133226916 + L1MA5 LINE L1 5863 6175 -125 889 170 0 0 chr11 15556556 15556691 -133226781 + AluSx SINE Alu 1 135 -177 2471 89 0 3 chr11 15556692 15557006 -133226466 + AluSq SINE Alu 1 313 0 23 0 0 0 chr11 15557006 15557029 -133226443 + AT_rich Low_complexity Low_complexity 1 23 0 800 176 39 39 chr11 15557339 15557492 -133225980 + AluSx SINE Alu 139 291 -21 818 135 7 0 chr11 15557494 15557635 -133225837 + L1MA5 LINE L1 6159 6300 0 11327 177 27 39 chr11 15557654 15558200 -133225272 + L1MA6 LINE L1 2963 3514 -2786 2398 97 0 3 chr11 15558200 15558511 -133224961 + AluSx SINE Alu 1 310 -2 11327 177 27 39 chr11 15558511 15559134 -133224338 + L1MA6 LINE L1 3514 4143 -2157 246 32 0 0 chr11 15559134 15559165 -133224307 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 11327 177 27 39 chr11 15559165 15561112 -133222360 + L1MA6 LINE L1 4143 6064 -236 312 262 29 0 chr11 15561168 15561271 -133222201 + L1M4 LINE L1 2880 2985 -3161 404 222 163 13 chr11 15561481 15561634 -133221838 + MER5B DNA MER1_type 1 176 -2 180 0 0 0 chr11 15562203 15562223 -133221249 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 146 0 23 chr11 15562227 15562357 -133221115 - FLAM_C SINE Alu -6 127 1 321 297 58 14 chr11 15562359 15562497 -133220975 - LTR67 LTR ERVL -40 517 374 361 304 31 70 chr11 15562887 15563114 -133220358 + L2 LINE L2 2443 2660 -654 198 71 0 0 chr11 15563289 15563317 -133220155 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 270 262 19 68 chr11 15563801 15563904 -133219568 + L2 LINE L2 2932 3029 -243 333 284 61 7 chr11 15564376 15564524 -133218948 - L1ME4a LINE L1 -1 6120 5965 506 313 17 0 chr11 15564630 15564806 -133218666 - L1ME4a LINE L1 -347 5774 5596 1673 275 10 5 chr11 15565716 15566112 -133217360 + LTR16C LTR ERVL 68 465 -26 228 399 42 0 chr11 15569102 15569270 -133214202 + MIR SINE MIR 77 251 -11 875 323 43 37 chr11 15570123 15570691 -133212781 + L2 LINE L2 2708 3282 -31 2787 10 0 3 chr11 15571181 15571487 -133211985 - AluY SINE Alu -6 305 1 308 284 10 39 chr11 15572151 15572253 -133211219 + L1ME LINE L1 5481 5579 -542 327 292 62 11 chr11 15572272 15572450 -133211022 - L1P5 LINE L1 -700 5451 5265 361 278 40 88 chr11 15573006 15573553 -133209919 - L1ME4a LINE L1 -1440 4706 4186 2451 60 13 0 chr11 15573686 15573988 -133209484 - AluY SINE Alu -5 306 1 437 123 0 49 chr11 15574176 15574257 -133209215 - AluSq/x SINE Alu -180 133 57 1287 162 0 0 chr11 15574257 15574448 -133209024 - AluSx SINE Alu -121 191 1 2878 248 61 31 chr11 15574556 15574766 -133208706 - L1M2 LINE L1 -4171 2936 2734 182 62 31 0 chr11 15574766 15574798 -133208674 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2878 248 61 31 chr11 15574798 15576220 -133207252 - L1M2 LINE L1 -4373 2734 1292 1528 186 4 11 chr11 15576224 15576503 -133206969 - L1M2 LINE L1 -6753 277 1 395 286 55 45 chr11 15576580 15576800 -133206672 + L1ME LINE L1 5122 5343 -803 345 308 33 17 chr11 15576844 15577060 -133206412 + L1ME LINE L1 5420 5645 -525 * 348 225 81 9 chr11 15577049 15577160 -133206312 - L1MC3 LINE L1 -1757 6028 5910 323 232 109 17 chr11 15577167 15577299 -133206173 + L1ME LINE L1 5681 5823 -339 189 94 0 0 chr11 15577333 15577365 -133206107 + (A)n Simple_repeat Simple_repeat 1 32 0 26 74 0 0 chr11 15577641 15577695 -133205777 + AT_rich Low_complexity Low_complexity 1 54 0 220 267 67 44 chr11 15577702 15577792 -133205680 + MIR SINE MIR 39 130 -78 241 360 27 9 chr11 15578581 15578692 -133204780 + L3 LINE CR1 1174 1286 -291 788 316 85 36 chr11 15578771 15579315 -133204157 - L2 LINE L2 -17 3296 2729 367 302 23 0 chr11 15579466 15579595 -133203877 + L1ME LINE L1 4713 4844 -1302 251 242 98 72 chr11 15579675 15579828 -133203644 + L1ME LINE L1 5009 5165 -981 5275 171 22 23 chr11 15579831 15581295 -133202177 + L1MA7 LINE L1 4814 6287 -4 616 261 85 6 chr11 15581323 15581621 -133201851 + L1ME LINE L1 5176 5495 -669 202 268 18 18 chr11 15581621 15581677 -133201795 + GA-rich Low_complexity Low_complexity 4 59 0 284 291 131 30 chr11 15581742 15581979 -133201493 - L2 LINE L2 -338 2976 2716 446 204 0 23 chr11 15582283 15582371 -133201101 + MER81 DNA DNA 29 114 0 468 288 51 19 chr11 15582382 15582597 -133200875 + L2 LINE L2 2284 2505 -809 1508 280 138 4 chr11 15582636 15583337 -133200135 - L2 LINE L2 -78 3235 2452 427 321 24 53 chr11 15583354 15583563 -133199909 + L2 LINE L2 2550 2752 -562 297 370 11 0 chr11 15583637 15583729 -133199743 + L2 LINE L2 3180 3272 -41 708 293 4 23 chr11 15583772 15584038 -133199434 + HAL1b LINE L1 521 781 -567 315 303 48 37 chr11 15584243 15584431 -133199041 + L1ME1 LINE L1 50 239 -5880 497 267 31 69 chr11 15585206 15585566 -133197906 + L1ME1 LINE L1 890 1235 -4884 324 0 0 0 chr11 15585591 15585627 -133197845 + (CA)n Simple_repeat Simple_repeat 2 37 0 3355 233 66 18 chr11 15585661 15587368 -133196104 + L1ME1 LINE L1 1433 3181 -2948 1962 218 53 81 chr11 15587361 15588615 -133194857 + L1ME1 LINE L1 4660 5882 -265 * 258 259 50 13 chr11 15588627 15588729 -133194743 + L1ME1 LINE L1 5959 6066 -81 2179 175 3 3 chr11 15588774 15589139 -133194333 - MLT1A1 LTR MaLR 0 365 1 2471 265 32 23 chr11 15589162 15589467 -133194005 + L1ME2 LINE L1 3049 3350 -2796 2119 112 0 10 chr11 15589467 15589761 -133193711 - AluSx SINE Alu -21 291 1 2471 265 32 23 chr11 15589761 15590399 -133193073 + L1ME2 LINE L1 3350 4000 -2146 1863 257 9 61 chr11 15590394 15591081 -133192391 + L1ME2 LINE L1 5504 6154 -10 * 395 231 66 28 chr11 15591091 15591273 -133192199 + L1M4 LINE L1 2316 2504 -3642 810 201 18 12 chr11 15591585 15591749 -133191723 + FAM SINE Alu 10 174 -11 21 0 0 0 chr11 15591851 15591872 -133191600 + AT_rich Low_complexity Low_complexity 1 21 0 243 244 61 0 chr11 15591888 15591970 -133191502 + L1ME LINE L1 5693 5779 -342 2183 38 0 0 chr11 15592878 15593139 -133190333 + L1PA5 LINE L1 5894 6154 0 342 0 0 0 chr11 15593155 15593193 -133190279 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2410 87 0 13 chr11 15593284 15593595 -133189877 + AluSq SINE Alu 1 307 -6 490 256 29 7 chr11 15594881 15595018 -133188454 - MIR SINE MIR -109 153 14 546 274 91 20 chr11 15595358 15595555 -133187917 + L2 LINE L2 2766 2976 -338 382 276 178 18 chr11 15595698 15595861 -133187611 + L3 LINE CR1 1315 1503 -74 392 101 32 9 chr11 15595876 15595953 -133187519 + L1P4 LINE L1 5651 5726 -429 254 277 24 12 chr11 15596411 15596494 -133186978 + L2 LINE L2 3226 3309 -4 5360 129 38 8 chr11 15596652 15597625 -133185847 + L1PA16 LINE L1 5167 6166 0 221 344 57 25 chr11 15598650 15598772 -133184700 - L2 LINE L2 -212 3060 2935 752 306 70 57 chr11 15598804 15599054 -133184418 + MLT1K LTR MaLR 27 285 -303 441 50 0 0 chr11 15599054 15599114 -133184358 + (TG)n Simple_repeat Simple_repeat 1 60 0 752 306 70 57 chr11 15599114 15599248 -133184224 + MLT1K LTR MaLR 285 416 -172 243 278 67 0 chr11 15599479 15599569 -133183903 - MIR SINE MIR -58 150 55 24 0 0 0 chr11 15599915 15599939 -133183533 + AT_rich Low_complexity Low_complexity 1 24 0 805 291 38 24 chr11 15600991 15601404 -133182068 + LTR33 LTR ERVL 30 500 -21 761 167 0 0 chr11 15602197 15602311 -133181161 + Tigger4(Zombi) DNA MER2_type 7 120 -2611 * 1057 136 47 70 chr11 15602310 15602490 -133180982 + Tigger4(Zombi) DNA MER2_type 2523 2699 -32 1993 113 45 10 chr11 15602490 15602781 -133180691 - AluSx SINE Alu -7 305 5 1057 136 47 70 chr11 15602781 15602813 -133180659 + Tigger4(Zombi) DNA MER2_type 2699 2730 -1 1428 230 65 17 chr11 15602826 15603178 -133180294 - MLT1A2 LTR MaLR -1 373 5 1029 185 25 20 chr11 15603235 15603435 -133180037 - MLT1A1 LTR MaLR -164 201 1 323 301 0 62 chr11 15603532 15603645 -133179827 - L1 LINE L1 -2445 3701 3596 1988 136 11 3 chr11 15603814 15604101 -133179371 - AluSx SINE Alu -23 289 1 2884 152 20 24 chr11 15604102 15604311 -133179161 - L1MC3 LINE L1 -8 8195 7987 1327 194 38 115 chr11 15604311 15604702 -133178770 + MLT1A1 LTR MaLR 1 361 -4 2884 152 20 24 chr11 15604702 15605046 -133178426 - L1MC3 LINE L1 -216 7987 7644 * 5353 183 22 10 chr11 15605028 15606064 -133177408 - L1MC3 LINE L1 -1420 6783 5735 3846 213 56 36 chr11 15606059 15606204 -133177268 - L1MC3 LINE L1 -4732 1832 1691 * 2092 142 7 3 chr11 15606204 15606513 -133176959 - AluSx SINE Alu 0 312 3 3846 213 56 36 chr11 15606513 15608153 -133175319 - L1MC3 LINE L1 -4873 1691 1 433 278 120 59 chr11 15608418 15609216 -133174256 - L1 LINE L1 -2985 3161 2315 26 30 0 0 chr11 15609330 15609363 -133174109 + AT_rich Low_complexity Low_complexity 1 33 0 307 319 13 7 chr11 15609931 15610069 -133173403 - HAL1b LINE L1 -809 1611 397 502 275 93 0 chr11 15610132 15610325 -133173147 - HAL1 LINE L1 -1 2506 2296 * 725 285 71 40 chr11 15610318 15610672 -133172800 - HAL1 LINE L1 -2141 366 2 322 303 78 64 chr11 15610792 15611078 -133172394 - HAL1 LINE L1 -1187 1320 1026 1546 158 24 34 chr11 15611078 15611369 -133172103 - AluJo SINE Alu -19 293 6 322 303 78 64 chr11 15611369 15611455 -133172017 - HAL1 LINE L1 -1481 1026 943 1204 197 47 101 chr11 15611930 15612315 -133171157 + MLT1A1 LTR MaLR 1 364 -1 4184 161 15 3 chr11 15612672 15613384 -133170088 + L1MC1 LINE L1 5596 6316 -17 810 124 22 22 chr11 15613948 15614126 -133169346 + GA-rich Low_complexity Low_complexity 1 178 0 234 225 0 0 chr11 15614126 15614166 -133169306 + polypurine Low_complexity Low_complexity 2 41 0 218 320 90 22 chr11 15615544 15615722 -133167750 - MIR SINE MIR -37 225 36 4693 108 90 61 chr11 15615803 15617187 -133166285 + pTR5 LTR ERV1 742 2295 -143 284 382 164 0 chr11 15617762 15617982 -133165490 - L3 LINE CR1 -1039 538 283 286 303 42 8 chr11 15619332 15619451 -133164021 + MIR3 SINE MIR 85 207 -1 210 91 0 0 chr11 15620769 15620802 -133162670 + (T)n Simple_repeat Simple_repeat 1 33 0 201 88 0 59 chr11 15621575 15621609 -133161863 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 217 316 42 11 chr11 15621905 15622000 -133161472 - MIR SINE MIR -74 188 91 331 209 19 19 chr11 15622284 15622389 -133161083 + CT-rich Low_complexity Low_complexity 1 105 0 227 243 0 43 chr11 15622389 15622459 -133161013 - L2 LINE L2 -17 3255 3189 2477 61 0 3 chr11 15622706 15622999 -133160473 - AluY SINE Alu -19 292 1 1687 78 13 26 chr11 15623435 15623667 -133159805 + MER30 DNA MER1_type 2 230 0 445 289 144 0 chr11 15623841 15624042 -133159430 + MIR SINE MIR 3 232 -30 228 227 34 0 chr11 15624067 15624155 -133159317 + (TAG)n Simple_repeat Simple_repeat 1 91 0 216 274 0 0 chr11 15624179 15624230 -133159242 + (TAG)n Simple_repeat Simple_repeat 3 53 0 192 279 23 70 chr11 15624581 15624667 -133158805 + L2 LINE L2 3188 3269 -3 1577 182 179 3 chr11 15625305 15625635 -133157837 + MSTD LTR MaLR 1 388 -8 218 308 20 55 chr11 15626132 15626278 -133157194 - MIR3 SINE MIR -65 143 3 231 36 0 0 chr11 15626479 15626507 -133156965 + (TG)n Simple_repeat Simple_repeat 2 29 0 185 183 17 0 chr11 15626509 15626569 -133156903 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 89 0 0 chr11 15626582 15626638 -133156834 + AT_rich Low_complexity Low_complexity 1 56 0 239 355 51 0 chr11 15626681 15626819 -133156653 + MIR SINE MIR 46 190 -72 249 233 128 60 chr11 15626830 15626963 -133156509 - MLT1L LTR MaLR 0 615 474 319 266 73 94 chr11 15627019 15627211 -133156261 - MLT1J LTR MaLR -216 295 108 2363 113 132 5 chr11 15628035 15628415 -133155057 + MSTA LTR MaLR 1 428 0 199 299 46 11 chr11 15630007 15630094 -133153378 - MIR3 SINE MIR -49 159 70 370 191 36 0 chr11 15630622 15630706 -133152766 - MIR SINE MIR -109 153 67 308 256 38 69 chr11 15631070 15631192 -133152280 + MIR SINE MIR 92 209 -53 2150 123 7 0 chr11 15631192 15631485 -133151987 + AluSx SINE Alu 1 295 -17 308 256 38 69 chr11 15631485 15631522 -133151950 + MIR SINE MIR 209 246 -16 343 261 0 0 chr11 15632506 15632594 -133150878 - MIR SINE MIR -112 150 63 545 224 26 13 chr11 15632929 15633081 -133150391 - MIR SINE MIR -31 231 78 1991 81 19 99 chr11 15633171 15633494 -133149978 - AluSc SINE Alu -12 297 1 239 247 194 0 chr11 15634478 15634571 -133148901 + L2 LINE L2 3203 3313 0 277 343 37 9 chr11 15635260 15635368 -133148104 + MIR3 SINE MIR 45 155 -53 604 315 81 0 chr11 15635475 15635710 -133147762 + MIR SINE MIR 9 262 0 1458 243 102 15 chr11 15635832 15636310 -133147162 - MLT2B1 LTR ERVL 0 520 1 330 132 0 0 chr11 15636422 15636475 -133146997 + (T)n Simple_repeat Simple_repeat 1 53 0 2055 129 0 3 chr11 15636522 15636840 -133146632 + AluSx SINE Alu 1 317 0 431 255 27 40 chr11 15636886 15637035 -133146437 - MIR SINE MIR -110 152 6 225 215 25 51 chr11 15637674 15637753 -133145719 + LTR67 LTR ERVL 481 557 0 534 282 110 5 chr11 15638143 15638352 -133145120 - L2 LINE L2 -541 2773 2543 849 196 18 18 chr11 15640454 15640617 -133142855 - FRAM SINE Alu 0 166 4 317 179 64 0 chr11 15640951 15641029 -133142443 + L2 LINE L2 3190 3272 0 246 32 0 0 chr11 15641035 15641066 -133142406 + (CA)n Simple_repeat Simple_repeat 2 32 0 510 217 40 33 chr11 15641422 15641574 -133141898 + LTR67 LTR ERVL 405 557 0 21 0 0 0 chr11 15642204 15642225 -133141247 + AT_rich Low_complexity Low_complexity 1 21 0 321 316 82 23 chr11 15642559 15642730 -133140742 - MIR SINE MIR -62 200 20 236 326 21 11 chr11 15642751 15642846 -133140626 + MIR3 SINE MIR 81 176 -32 326 266 18 28 chr11 15643294 15643305 -133140167 - MIR SINE MIR -87 175 165 2298 94 3 0 chr11 15643305 15643603 -133139869 + AluY SINE Alu 1 299 -12 326 266 18 28 chr11 15643603 15643700 -133139772 - MIR SINE MIR -97 165 68 588 224 18 30 chr11 15644011 15644176 -133139296 - MIR SINE MIR -13 249 87 289 228 76 0 chr11 15644313 15644392 -133139080 + MIR SINE MIR 108 192 -70 276 296 12 0 chr11 15645387 15645468 -133138004 - L2 LINE L2 -7 3265 3184 747 236 60 0 chr11 15645560 15645742 -133137730 + L2 LINE L2 2759 2951 -363 291 274 20 20 chr11 15647176 15647278 -133136194 + L2 LINE L2 2685 2786 -528 381 218 20 20 chr11 15647360 15647461 -133136011 + MER5B DNA MER1_type 15 115 -63 343 233 68 61 chr11 15647805 15647968 -133135504 - MLT1H LTR MaLR -328 221 58 247 274 49 59 chr11 15648010 15648112 -133135360 + MIR3 SINE MIR 85 185 -23 386 289 112 7 chr11 15649024 15649176 -133134296 - MIR3 SINE MIR -26 182 15 401 228 299 11 chr11 15649188 15649372 -133134100 - LTR16A LTR ERVL -17 433 197 687 224 229 10 chr11 15650092 15650443 -133133029 - MER57B LTR ERV1 -4 399 1 540 0 0 0 chr11 15650910 15650970 -133132502 + (CA)n Simple_repeat Simple_repeat 2 61 0 188 315 10 140 chr11 15651204 15651404 -133132068 - L2 LINE L2 -107 3165 2992 470 284 99 25 chr11 15651491 15651692 -133131780 - MIR SINE MIR -27 235 20 272 270 93 83 chr11 15652175 15652379 -133131093 + MIR SINE MIR 51 256 -6 2170 106 41 0 chr11 15652827 15653119 -133130353 - AluSg SINE Alu -6 304 1 413 296 15 23 chr11 15653449 15653581 -133129891 + MIR SINE MIR 21 151 -111 210 277 48 36 chr11 15653744 15653827 -133129645 + MIR SINE MIR 169 252 -10 183 256 23 0 chr11 15654270 15654313 -133129159 + MIR SINE MIR 32 75 -133 334 287 106 68 chr11 15654539 15654776 -133128696 + L2 LINE L2 3027 3272 0 542 272 41 24 chr11 15655584 15655753 -133127719 + MIR SINE MIR 80 251 -11 368 227 0 2 chr11 15657020 15657099 -133126373 - MIR SINE MIR -93 115 38 252 0 0 0 chr11 15658603 15658631 -133124841 + (T)n Simple_repeat Simple_repeat 1 28 0 350 321 29 29 chr11 15659037 15659177 -133124295 - MIR SINE MIR -110 152 13 374 332 82 38 chr11 15659699 15660039 -133123433 + L2 LINE L2 2910 3264 -49 261 253 232 0 chr11 15660911 15661006 -133122466 + MIR SINE MIR 9 125 -137 764 254 0 0 chr11 15661021 15661194 -133122278 + MER45A DNA AcHobo 5 177 -1 449 259 28 21 chr11 15662684 15662827 -133120645 + MIR3 SINE MIR 2 145 -63 415 293 8 0 chr11 15663372 15663505 -133119967 - MIR SINE MIR -5 257 124 454 193 44 26 chr11 15663711 15663825 -133119647 + MER103 DNA DNA 40 155 -11 34 0 0 0 chr11 15663864 15663898 -133119574 + AT_rich Low_complexity Low_complexity 1 34 0 228 301 68 10 chr11 15663903 15664006 -133119466 - MIR SINE MIR -64 144 36 2532 143 10 14 chr11 15664212 15664625 -133118847 - MLT2D LTR ERVL 0 414 4 486 227 0 0 chr11 15664989 15665086 -133118386 + MER5A DNA MER1_type 9 105 -84 687 304 142 18 chr11 15665677 15666128 -133117344 + L2 LINE L2 2807 3313 0 278 320 64 8 chr11 15666128 15666253 -133117219 + L2 LINE L2 3112 3243 -29 1211 163 5 0 chr11 15666500 15666696 -133116776 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 15666699 15666733 -133116739 + AT_rich Low_complexity Low_complexity 1 34 0 249 351 13 0 chr11 15669276 15669353 -133114119 - L2 LINE L2 -86 3186 3109 232 289 48 12 chr11 15669815 15669898 -133113574 + MIR SINE MIR 122 207 -55 219 280 167 15 chr11 15670623 15670755 -133112717 + MIR SINE MIR 41 192 -70 338 216 12 154 chr11 15670885 15671047 -133112425 + MIR SINE MIR 124 262 0 234 343 101 18 chr11 15672261 15672430 -133111042 + LTR16C LTR ERVL 299 481 -10 205 312 11 11 chr11 15672996 15673089 -133110383 + MIR SINE MIR 60 152 -110 272 276 92 18 chr11 15673250 15673444 -133110028 - MIR SINE MIR -54 208 2 233 296 49 0 chr11 15674457 15674538 -133108934 + L2 LINE L2 3187 3271 -1 286 246 86 102 chr11 15674861 15675048 -133108424 + MER117 DNA MER1_type 9 192 -5 350 300 63 36 chr11 15675080 15675303 -133108169 + L2 LINE L2 2617 2845 -469 343 343 41 14 chr11 15675546 15675692 -133107780 + L2 LINE L2 3123 3272 0 450 281 163 0 chr11 15676638 15676791 -133106681 - MER5A DNA MER1_type -1 188 11 251 290 20 10 chr11 15677011 15677111 -133106361 - Charlie2a DNA MER1_type 0 2862 2762 292 210 200 40 chr11 15677189 15677289 -133106183 + L2 LINE L2 3189 3304 -9 538 196 30 89 chr11 15677289 15677457 -133106015 - Charlie2a DNA MER1_type -1978 884 727 325 306 11 59 chr11 15679099 15679285 -133104187 - MIR3 SINE MIR -13 195 19 893 245 55 4 chr11 15680088 15680325 -133103147 - MIR SINE MIR 0 262 14 450 315 12 12 chr11 15680384 15680549 -133102923 - MER5A DNA MER1_type -2 187 23 568 185 65 0 chr11 15680752 15680860 -133102612 + MER94 DNA DNA 3 117 -17 1097 272 44 21 chr11 15680937 15681275 -133102197 + LTR16C LTR ERVL 126 471 -20 299 229 133 0 chr11 15681288 15681371 -133102101 + MIR SINE MIR 62 155 -107 189 171 0 0 chr11 15682763 15682798 -133100674 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1405 240 49 49 chr11 15682890 15683469 -133100003 - MLT1D LTR MaLR 0 626 1 236 322 39 15 chr11 15683577 15683782 -133099690 - L1ME3A LINE L1 -230 5940 5731 1191 304 53 15 chr11 15684409 15685086 -133098386 + L2 LINE L2 2511 3299 -14 459 252 150 0 chr11 15685130 15685257 -133098215 + MER5B DNA MER1_type 1 146 -32 227 328 33 25 chr11 15685304 15685426 -133098046 + MLT1K LTR MaLR 227 349 -239 373 173 40 40 chr11 15685610 15685685 -133097787 + MLT1K LTR MaLR 513 587 -1 180 0 0 0 chr11 15687256 15687276 -133096196 + (GGGAA)n Simple_repeat Simple_repeat 3 22 0 307 301 133 0 chr11 15688084 15688197 -133095275 + MLT1H LTR MaLR 404 531 -18 2175 112 3 13 chr11 15689264 15689568 -133093904 - AluSx SINE Alu -11 301 1 550 308 35 13 chr11 15689638 15689865 -133093607 + MIR SINE MIR 20 251 -11 307 365 86 27 chr11 15690212 15690434 -133093038 - MIR SINE MIR -6 256 22 801 264 67 103 chr11 15690527 15690753 -133092719 + MLT1J LTR MaLR 9 242 -269 1758 75 0 0 chr11 15690753 15690965 -133092507 - AluSq SINE Alu -10 303 92 801 264 67 103 chr11 15690965 15691260 -133092212 + MLT1J LTR MaLR 242 511 0 606 293 11 11 chr11 15691270 15691461 -133092011 - MIR SINE MIR -70 192 2 457 271 222 10 chr11 15692515 15692718 -133090754 + MIR SINE MIR 2 247 -15 299 275 14 60 chr11 15692931 15693030 -133090442 + MIR SINE MIR 21 124 -84 2186 137 6 3 chr11 15693079 15693400 -133090072 + MER7A DNA MER2_type 22 341 -5 897 209 47 21 chr11 15693569 15693760 -133089712 - MLT1H LTR MaLR -18 531 336 223 274 24 36 chr11 15694180 15694264 -133089208 + MIR3 SINE MIR 125 207 -1 506 278 46 33 chr11 15694321 15694472 -133089000 + L3 LINE CR1 1328 1480 -97 332 59 20 0 chr11 15694624 15694675 -133088797 + (TA)n Simple_repeat Simple_repeat 2 53 0 304 294 0 0 chr11 15695017 15695102 -133088370 + MIR SINE MIR 177 261 -1 1574 164 84 4 chr11 15695955 15696065 -133087407 + AluJo SINE Alu 1 101 -211 1010 40 40 7 chr11 15696065 15696215 -133087257 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 1574 164 84 4 chr11 15696215 15696378 -133087094 + AluJo SINE Alu 101 296 -16 459 263 119 0 chr11 15697050 15697168 -133086304 + MIR SINE MIR 101 232 -30 183 80 0 0 chr11 15697177 15697202 -133086270 + (TAA)n Simple_repeat Simple_repeat 1 25 0 321 270 33 79 chr11 15697210 15697362 -133086110 + L2 LINE L2 3122 3266 -6 540 278 83 56 chr11 15698591 15698843 -133084629 - MIR SINE MIR -3 259 1 230 211 197 0 chr11 15698896 15698972 -133084500 + MIR SINE MIR 56 146 -116 244 265 0 121 chr11 15699046 15699129 -133084343 + L2 LINE L2 3168 3240 -32 198 301 133 0 chr11 15699299 15699382 -133084090 + MIR SINE MIR 32 125 -83 185 271 34 0 chr11 15700101 15700160 -133083312 - L2 LINE L2 -5 3267 3207 245 314 73 37 chr11 15700166 15700357 -133083115 + MIR SINE MIR 63 260 -2 339 257 134 89 chr11 15700487 15700970 -133082502 + L2 LINE L2 2715 3234 -38 462 263 11 0 chr11 15701167 15701262 -133082210 + MER69 DNA AcHobo 1 96 -1130 865 163 0 0 chr11 15701267 15701402 -133082070 - AluJb SINE Alu -23 289 155 355 253 22 0 chr11 15701404 15701495 -133081977 + MER69 DNA AcHobo 2434 2526 0 201 296 30 15 chr11 15701497 15701564 -133081908 + MER5A DNA MER1_type 111 188 -1 432 233 134 81 chr11 15701569 15701741 -133081731 + MER5A DNA MER1_type 9 189 0 219 299 117 80 chr11 15701759 15702023 -133081449 - L2 LINE L2 -193 3079 2806 341 287 10 0 chr11 15702806 15702907 -133080565 - MIR SINE MIR -113 149 48 360 262 49 8 chr11 15703056 15703178 -133080294 - MIR3 SINE MIR 0 208 82 332 279 0 10 chr11 15703401 15703505 -133079967 + GA-rich Low_complexity Low_complexity 4 106 0 463 116 12 12 chr11 15703505 15703591 -133079881 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 895 261 9 5 chr11 15703591 15703813 -133079659 - MIR SINE MIR -9 253 31 325 304 48 72 chr11 15704049 15704256 -133079216 + MIR SINE MIR 20 221 -41 635 264 5 43 chr11 15704510 15704718 -133078754 - L2 LINE L2 0 3313 3114 256 341 52 2 chr11 15705017 15705152 -133078320 - MIR SINE MIR -63 145 14 * 370 303 167 20 chr11 15705133 15705350 -133078122 + L2 LINE L2 2745 2992 -321 183 80 0 0 chr11 15705403 15705428 -133078044 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1830 155 0 4 chr11 15705435 15705713 -133077759 - AluSx SINE Alu -35 277 1 562 258 107 25 chr11 15705713 15705872 -133077600 - L1ME1 LINE L1 -10 6156 5985 705 203 95 86 chr11 15705920 15706235 -133077237 + L2 LINE L2 2996 3313 0 590 283 4 69 chr11 15706422 15706655 -133076817 - MIR SINE MIR -23 239 22 274 313 30 8 chr11 15707514 15707645 -133075827 - MIR SINE MIR -122 140 7 403 179 53 21 chr11 15708067 15708162 -133075310 - MIR SINE MIR -68 140 43 22 0 0 0 chr11 15708701 15708723 -133074749 + AT_rich Low_complexity Low_complexity 1 22 0 276 100 0 0 chr11 15708877 15708917 -133074555 + (GA)n Simple_repeat Simple_repeat 2 41 0 213 238 0 0 chr11 15709263 15709364 -133074108 + GA-rich Low_complexity Low_complexity 2 102 0 216 0 0 0 chr11 15709567 15709591 -133073881 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr11 15709676 15709707 -133073765 + (CA)n Simple_repeat Simple_repeat 2 32 0 38 0 0 0 chr11 15709935 15709973 -133073499 + AT_rich Low_complexity Low_complexity 1 38 0 1797 141 53 3 chr11 15709979 15710263 -133073209 + AluJb SINE Alu 1 298 -14 511 358 4 35 chr11 15710461 15710693 -133072779 - MIR SINE MIR -10 252 28 440 317 100 6 chr11 15710703 15710883 -133072589 + MIR SINE MIR 52 248 -14 346 231 157 8 chr11 15711001 15711122 -133072350 + MIR SINE MIR 117 255 -7 264 274 99 9 chr11 15711620 15711816 -133071656 + MIR3 SINE MIR 9 221 -41 * 544 270 117 6 chr11 15711804 15711967 -133071505 + MIR SINE MIR 5 185 -77 234 270 44 88 chr11 15712141 15712278 -133071194 - L2 LINE L2 -235 3037 2907 2119 149 135 50 chr11 15712286 15712768 -133070704 - MER44D DNA MER2_type 0 605 28 920 189 77 36 chr11 15712768 15713016 -133070456 - MSTD LTR MaLR -138 258 1 468 266 68 23 chr11 15713371 15713548 -133069924 - MIR SINE MIR -72 190 6 384 316 59 20 chr11 15714689 15714841 -133068631 - MIR3 SINE MIR -14 194 37 1070 130 73 53 chr11 15715633 15715879 -133067593 + ORSL DNA AcHobo 12 262 -13 2344 206 106 17 chr11 15716379 15716513 -133066959 + L1ME3A LINE L1 5509 5630 -540 355 218 26 0 chr11 15716513 15716591 -133066881 + MER116 DNA Mariner 1 80 0 2344 206 106 17 chr11 15716591 15717059 -133066413 + L1ME3A LINE L1 5630 6165 -5 257 356 17 39 chr11 15717203 15717383 -133066089 - MIR SINE MIR -66 196 21 510 297 34 0 chr11 15718362 15718510 -133064962 + MIR3 SINE MIR 41 193 -15 225 328 228 18 chr11 15719070 15719412 -133064060 + L2 LINE L2 2564 2977 -337 332 259 98 9 chr11 15719431 15719543 -133063929 + L2 LINE L2 3192 3313 0 222 235 0 59 chr11 15719807 15719875 -133063597 + L2 LINE L2 3208 3271 -1 187 400 49 27 chr11 15719918 15720103 -133063369 + L2 LINE L2 2979 3167 -105 202 216 120 96 chr11 15720820 15720945 -133062527 + MIR SINE MIR 1 129 -79 307 265 0 48 chr11 15721453 15721536 -133061936 - L2 LINE L2 0 3313 3235 356 333 103 12 chr11 15721785 15721950 -133061522 + L3 LINE CR1 1316 1495 -82 456 320 39 26 chr11 15722472 15722625 -133060847 - L2 LINE L2 -2 3270 3116 1825 149 33 0 chr11 15723096 15723408 -133060064 + AluSx SINE Alu 1 321 0 269 254 0 0 chr11 15724561 15724620 -133058852 + MLT1I LTR MaLR 344 402 -7 210 250 0 0 chr11 15724621 15724661 -133058811 - L2 LINE L2 -23 3249 3210 681 281 201 16 chr11 15725081 15725469 -133058003 + L2 LINE L2 2233 2692 -622 263 299 122 41 chr11 15725649 15725870 -133057602 + L2 LINE L2 2952 3190 -123 2363 92 3 0 chr11 15726175 15726479 -133056993 + AluSp SINE Alu 3 307 -6 726 271 89 14 chr11 15726489 15726703 -133056769 - MIR SINE MIR -30 232 3 437 282 20 34 chr11 15726848 15726997 -133056475 + MIR3 SINE MIR 28 174 -34 1616 138 88 77 chr11 15729592 15729955 -133053517 + MLT1B LTR MaLR 5 371 -19 230 328 0 16 chr11 15730004 15730068 -133053404 + L2 LINE L2 3205 3267 -5 273 337 0 0 chr11 15731420 15731518 -133051954 + MER117 DNA MER1_type 67 164 -33 294 301 88 22 chr11 15732114 15732250 -133051222 - MIR SINE MIR -9 253 109 1217 280 47 39 chr11 15732544 15733166 -133050306 + L1ME1 LINE L1 909 1535 -5008 * 9026 252 57 21 chr11 15733162 15736904 -133046568 + L1ME1 LINE L1 1824 5700 -840 2904 244 69 10 chr11 15736953 15737777 -133045695 + L1ME1 LINE L1 5687 6559 -1 6735 245 49 30 chr11 15737777 15740310 -133043162 + L1ME2 LINE L1 3013 5591 -573 1210 226 58 16 chr11 15740308 15740617 -133042855 + L1ME2 LINE L1 5827 6148 -16 * 2580 124 13 5 chr11 15741238 15741610 -133041862 + THE1C LTR MaLR 1 375 0 219 345 56 65 chr11 15741789 15742021 -133041451 - MIR SINE MIR -23 239 10 303 308 189 16 chr11 15742112 15742297 -133041175 - MIR SINE MIR -10 252 36 2186 174 52 12 chr11 15742536 15742752 -133040720 - MSTB LTR MaLR -2 424 218 287 0 0 50 chr11 15742752 15742792 -133040680 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5036 65 35 0 chr11 15742792 15743419 -133040053 - SVA Other Other -23 1363 715 2186 174 52 12 chr11 15743419 15743608 -133039864 - MSTB LTR MaLR -207 219 2 1922 135 24 0 chr11 15743782 15744071 -133039401 - AluSg SINE Alu -14 296 1 576 288 100 22 chr11 15744209 15744480 -133038992 + L2 LINE L2 3020 3311 -2 747 297 39 3 chr11 15744653 15745058 -133038414 + LTR33 LTR ERVL 34 475 -46 609 191 0 50 chr11 15745827 15745968 -133037504 + MIR SINE MIR 40 173 -89 905 291 95 7 chr11 15746009 15746315 -133037157 + MLT1I LTR MaLR 77 409 0 331 225 45 22 chr11 15746315 15746404 -133037068 + MIR SINE MIR 171 261 -1 2454 132 57 21 chr11 15746437 15746855 -133036617 + Tigger2a DNA MER2_type 2 434 0 1098 318 83 33 chr11 15748006 15748137 -133035335 + ERVL LTR ERVL 4628 4751 -1013 1515 242 88 11 chr11 15748137 15748604 -133034868 - MLT1D LTR MaLR 0 505 3 1098 318 83 33 chr11 15748604 15749135 -133034337 + ERVL LTR ERVL 4751 5323 -441 781 281 98 40 chr11 15749248 15749647 -133033825 + LTR16A LTR ERVL 29 450 0 2341 103 3 0 chr11 15750464 15750774 -133032698 + AluSx SINE Alu 1 311 -1 546 281 44 0 chr11 15751181 15751341 -133032131 - MIR SINE MIR -3 259 93 442 248 23 47 chr11 15751927 15752056 -133031416 - MIR SINE MIR -58 204 79 273 299 102 19 chr11 15752224 15752381 -133031091 - MIR SINE MIR -14 248 79 241 299 52 26 chr11 15752547 15752701 -133030771 - L2 LINE L2 -217 3055 2898 248 309 63 109 chr11 15753235 15753585 -133029887 - L2 LINE L2 -10 3262 2929 500 221 0 0 chr11 15753946 15754050 -133029422 - MIR SINE MIR -2 260 157 410 265 215 45 chr11 15754157 15754380 -133029092 - MIR SINE MIR 0 262 2 215 349 0 15 chr11 15755079 15755211 -133028261 + (CA)n Simple_repeat Simple_repeat 1 130 0 * 285 302 11 28 chr11 15755135 15755314 -133028158 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 426 270 31 25 chr11 15755415 15755574 -133027898 + L3b LINE CR1 1244 1403 -180 22 80 0 0 chr11 15755679 15755729 -133027743 + AT_rich Low_complexity Low_complexity 1 50 0 202 174 0 43 chr11 15755937 15755983 -133027489 + L2 LINE L2 3016 3059 -213 1049 276 41 24 chr11 15756076 15756442 -133027030 + LTR16A LTR ERVL 74 443 -7 1013 269 115 33 chr11 15756482 15757252 -133026220 + L2 LINE L2 2467 3313 0 186 260 20 0 chr11 15757252 15757302 -133026170 + L2 LINE L2 3112 3162 -110 1227 168 0 0 chr11 15757626 15757823 -133025649 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 15757826 15757860 -133025612 + AT_rich Low_complexity Low_complexity 1 34 0 247 296 61 10 chr11 15760355 15760453 -133023019 + L2 LINE L2 2606 2708 -606 386 238 0 0 chr11 15760504 15760588 -133022884 + MIR SINE MIR 49 132 -130 208 296 19 56 chr11 15761625 15761733 -133021739 + MIR SINE MIR 104 207 -55 529 225 0 50 chr11 15761824 15761944 -133021528 + MER81 DNA DNA 1 114 0 2243 127 22 55 chr11 15761970 15762373 -133021099 + MLT1B LTR MaLR 1 390 0 537 199 20 53 chr11 15762425 15762576 -133020896 - MIR SINE MIR -56 206 61 183 80 0 0 chr11 15762855 15762880 -133020592 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 2357 141 33 5 chr11 15762883 15763274 -133020198 + MER57A LTR ERV1 1 402 -1 252 255 0 0 chr11 15763378 15763429 -133020043 - Zaphod DNA AcHobo -1 4030 3980 1541 209 57 9 chr11 15763444 15763775 -133019697 + MLT1A1 LTR MaLR 19 365 0 323 303 8 8 chr11 15763792 15763914 -133019558 - MER115 DNA AcHobo -48 645 524 203 352 152 25 chr11 15764307 15764622 -133018850 - L2 LINE L2 -1 3271 2917 189 147 0 0 chr11 15764923 15764957 -133018515 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1148 258 115 32 chr11 15766015 15766484 -133016988 + MLT1J LTR MaLR 1 508 -3 257 324 81 27 chr11 15766619 15766767 -133016705 - L2 LINE L2 0 3272 3117 299 279 48 10 chr11 15768011 15768115 -133015357 - MIR3 SINE MIR -19 189 82 295 280 19 28 chr11 15768996 15769103 -133014369 - L1M3d LINE L1 -5780 111 6 771 165 0 15 chr11 15769128 15769261 -133014211 + FLAM_C SINE Alu 2 132 -1 2308 98 0 10 chr11 15769404 15769701 -133013771 + AluSx SINE Alu 1 294 -18 1195 159 57 18 chr11 15770000 15770226 -133013246 - MLT1A1 LTR MaLR -5 360 126 1322 190 261 8 chr11 15770226 15770550 -133012922 + MSTB LTR MaLR 1 434 -23 180 0 0 0 chr11 15770668 15770688 -133012784 + (T)n Simple_repeat Simple_repeat 1 20 0 2263 83 17 0 chr11 15770734 15771023 -133012449 - AluY SINE Alu -17 294 1 218 246 16 16 chr11 15771447 15771508 -133011964 - L2 LINE L2 -22 3291 3231 201 346 13 0 chr11 15771935 15772013 -133011459 + MIR SINE MIR 183 261 -1 265 302 62 10 chr11 15772306 15772402 -133011070 - L2 LINE L2 -3 3269 3169 269 324 0 29 chr11 15772708 15772810 -133010662 + MLT1H LTR MaLR 162 260 -289 342 264 169 20 chr11 15775334 15775535 -133007937 - L3 LINE CR1 -4 1573 1343 515 274 53 32 chr11 15776958 15777148 -133006324 - L3 LINE CR1 -61 1516 1323 1079 258 69 52 chr11 15777580 15778239 -133005233 + L2 LINE L2 2649 3313 0 25 0 0 0 chr11 15778408 15778433 -133005039 + AT_rich Low_complexity Low_complexity 1 25 0 363 254 0 84 chr11 15778776 15778805 -133004667 + MIR SINE MIR 108 138 -124 1126 174 92 132 chr11 15778805 15779185 -133004287 - MLT1A1 LTR MaLR 0 365 1 363 254 0 84 chr11 15779185 15779297 -133004175 + MIR SINE MIR 138 237 -25 286 159 16 48 chr11 15779673 15779736 -133003736 + L2 LINE L2 3189 3249 -64 1094 285 117 3 chr11 15779859 15780217 -133003255 - LTR16A LTR ERVL 0 450 52 25 51 0 0 chr11 15780680 15780719 -133002753 + AT_rich Low_complexity Low_complexity 1 39 0 243 191 0 0 chr11 15781337 15781384 -133002088 + MIR SINE MIR 105 151 -111 231 362 91 19 chr11 15781521 15781786 -133001686 - L2 LINE L2 -351 2963 2680 207 246 0 0 chr11 15781868 15781886 -133001586 + (TTAG)n Simple_repeat Simple_repeat 4 21 -39 2242 172 32 3 chr11 15781886 15782263 -133001209 - MLT1B LTR MaLR -2 388 1 207 246 0 0 chr11 15782263 15782301 -133001171 + (TTAG)n Simple_repeat Simple_repeat 20 60 0 228 300 43 0 chr11 15782396 15782466 -133001006 + L2 LINE L2 3196 3268 -4 231 352 72 0 chr11 15782623 15782748 -133000724 - L3 LINE CR1 -53 1524 1391 377 306 55 47 chr11 15782762 15783017 -133000455 - MER102a DNA MER1_type -1 329 73 241 420 46 0 chr11 15783405 15783536 -132999936 + L2 LINE L2 3134 3270 -2 527 301 61 14 chr11 15783546 15783759 -132999713 - L3 LINE CR1 -274 1303 1081 395 312 48 32 chr11 15783821 15784007 -132999465 - MIR SINE MIR -67 195 7 21 0 0 0 chr11 15784430 15784451 -132999021 + AT_rich Low_complexity Low_complexity 1 21 0 373 320 0 0 chr11 15785563 15785691 -132997781 - L2 LINE L2 0 3313 3186 313 342 19 0 chr11 15786109 15786264 -132997208 + MER103 DNA DNA 3 160 -6 258 293 98 8 chr11 15786330 15786453 -132997019 - MIR3 SINE MIR -48 160 27 223 316 89 0 chr11 15786840 15786919 -132996553 - L3 LINE CR1 -98 1479 1394 258 280 140 32 chr11 15787972 15788129 -132995343 - MIR SINE MIR -15 193 20 279 265 12 12 chr11 15788470 15788553 -132994919 - MLT2E LTR ERVL -2 626 544 275 186 0 29 chr11 15789004 15789074 -132994398 + L1MA10 LINE L1 6266 6333 -1 251 254 70 0 chr11 15790313 15790384 -132993088 - LTR16C LTR ERVL -93 398 323 * 588 308 150 16 chr11 15790364 15790750 -132992722 + MLT1K LTR MaLR 144 581 -7 251 253 0 22 chr11 15790901 15790992 -132992480 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 296 404 7 7 chr11 15791958 15792099 -132991373 + L2 LINE L2 3117 3257 -15 279 161 0 0 chr11 15792123 15792179 -132991293 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 336 221 90 17 chr11 15792315 15792449 -132991023 - MIR SINE MIR -68 140 46 312 317 59 0 chr11 15792959 15793060 -132990412 - L3 LINE CR1 -15 1562 1456 317 297 135 32 chr11 15793100 15793285 -132990187 + MIR SINE MIR 52 255 -7 337 338 116 27 chr11 15793285 15793578 -132989894 - L3 LINE CR1 -165 1412 1094 500 310 41 18 chr11 15795355 15795526 -132987946 + MIR SINE MIR 72 246 -16 412 317 100 69 chr11 15796302 15796630 -132986842 + L2 LINE L2 2382 2737 -577 1205 214 21 18 chr11 15796630 15796910 -132986562 - AluJo SINE Alu -31 281 1 412 317 100 69 chr11 15796910 15797159 -132986313 + L2 LINE L2 2737 2977 -337 228 286 0 14 chr11 15797377 15797447 -132986025 + GA-rich Low_complexity Low_complexity 1 69 0 356 73 36 0 chr11 15797479 15797534 -132985938 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 202 222 0 0 chr11 15797542 15797578 -132985894 + T-rich Low_complexity Low_complexity 4 39 0 225 146 0 0 chr11 15797648 15797696 -132985776 + (T)n Simple_repeat Simple_repeat 1 48 0 245 125 0 21 chr11 15798361 15798409 -132985063 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr11 15798644 15798665 -132984807 + AT_rich Low_complexity Low_complexity 1 21 0 613 313 31 19 chr11 15799150 15799406 -132984066 + MIR SINE MIR 2 260 -2 478 286 17 40 chr11 15799694 15799869 -132983603 + MLT1J2 LTR MaLR 264 434 -16 216 355 86 20 chr11 15800404 15800556 -132982916 - L2 LINE L2 -160 3112 2951 564 181 118 8 chr11 15801330 15801457 -132982015 + MIR SINE MIR 51 191 -71 790 289 31 13 chr11 15801491 15801719 -132981753 - MIR SINE MIR -28 234 3 2219 129 21 46 chr11 15801826 15801974 -132981498 - THE1B LTR MaLR 0 364 214 1916 127 40 119 chr11 15801974 15802369 -132981103 - THE1B LTR MaLR 0 364 1 2219 129 21 46 chr11 15802369 15802593 -132980879 - THE1B LTR MaLR -150 214 1 1871 233 106 8 chr11 15802649 15803142 -132980330 - MLT1E LTR MaLR -2 591 51 553 221 33 0 chr11 15803173 15803295 -132980177 + MER94 DNA DNA 8 133 -1 874 172 6 45 chr11 15803373 15803530 -132979942 - MER8 DNA MER2_type 0 239 89 2280 173 51 15 chr11 15804331 15804742 -132978730 + MSTB LTR MaLR 1 426 0 478 326 112 48 chr11 15805117 15805627 -132977845 - L2 LINE L2 0 3272 2734 372 286 181 0 chr11 15806198 15806331 -132977141 - MIR SINE MIR -1 261 105 582 263 38 83 chr11 15807037 15807305 -132976167 - MIR SINE MIR -4 258 4 763 137 13 72 chr11 15808972 15809058 -132974414 + Charlie4 DNA MER1_type 1818 1893 -68 882 215 280 64 chr11 15809058 15809462 -132974010 + LTR16C LTR ERVL 1 491 0 763 137 13 72 chr11 15809462 15809528 -132973944 + Charlie4 DNA MER1_type 1893 1961 0 252 208 21 0 chr11 15809553 15809613 -132973859 - MIR SINE MIR -51 157 94 210 71 0 0 chr11 15810239 15810267 -132973205 + (TAA)n Simple_repeat Simple_repeat 1 28 0 321 208 104 40 chr11 15810951 15811076 -132972396 - L1MCa LINE L1 -4203 2223 2091 275 241 52 60 chr11 15811279 15811395 -132972077 - HAL1b LINE L1 -930 418 304 443 274 18 7 chr11 15812767 15813040 -132970432 + CT-rich Low_complexity Low_complexity 1 276 0 327 228 0 38 chr11 15813068 15813310 -132970162 + C-rich Low_complexity Low_complexity 1 232 0 4248 218 58 37 chr11 15813807 15816026 -132967446 - L1MCc LINE L1 -4326 2796 3 565 250 58 31 chr11 15817069 15817293 -132966179 + L2 LINE L2 3081 3310 -3 26 30 0 0 chr11 15817351 15817384 -132966088 + AT_rich Low_complexity Low_complexity 1 33 0 801 285 55 4 chr11 15817397 15817632 -132965840 - MIR SINE MIR -14 248 2 426 273 25 50 chr11 15818426 15818587 -132964885 + MER103 DNA DNA 6 162 -4 313 282 127 42 chr11 15820056 15820269 -132963203 + MIR SINE MIR 22 252 -10 532 309 18 18 chr11 15820304 15820469 -132963003 + MIR SINE MIR 1 165 -97 376 276 20 20 chr11 15820643 15820741 -132962731 + L1MEd LINE L1 434 531 -5588 234 202 0 121 chr11 15821468 15821567 -132961905 - LTR67 LTR ERVL 0 557 471 456 242 126 146 chr11 15821579 15821693 -132961779 + L1MEd LINE L1 104 219 -5986 858 165 0 0 chr11 15821693 15821826 -132961646 - FLAM_A SINE Alu 0 133 1 456 242 126 146 chr11 15821826 15822733 -132960739 + L1MEd LINE L1 219 1105 -5100 856 196 6 6 chr11 15822858 15823021 -132960451 - FRAM SINE Alu -13 163 1 295 308 13 31 chr11 15823023 15823182 -132960290 + L1MEd LINE L1 1554 1709 -4687 2195 123 0 0 chr11 15823186 15823486 -132959986 + AluSx SINE Alu 1 300 -12 295 99 37 25 chr11 15823737 15823818 -132959654 + (TA)n Simple_repeat Simple_repeat 1 82 0 332 263 58 74 chr11 15824723 15825088 -132958384 + L1MEd LINE L1 858 1216 -4903 3464 257 92 44 chr11 15825091 15825532 -132957940 + HAL1 LINE L1 4 422 -2085 817 198 105 6 chr11 15825532 15825704 -132957768 + MER5A DNA MER1_type 1 189 0 3464 257 92 44 chr11 15825704 15825721 -132957751 + HAL1 LINE L1 422 437 -2070 1745 171 4 0 chr11 15825721 15825996 -132957476 - AluSx SINE Alu -15 297 22 3464 257 92 44 chr11 15825996 15827021 -132956451 + HAL1 LINE L1 437 1559 -948 1043 266 91 44 chr11 15827073 15827793 -132955679 + HAL1 LINE L1 1651 2476 -31 378 269 73 59 chr11 15828589 15828875 -132954597 - LTR67 LTR ERVL -77 480 191 291 241 0 0 chr11 15829073 15829127 -132954345 + MIR SINE MIR 15 68 -194 * 710 269 137 74 chr11 15829125 15829519 -132953953 + L2 LINE L2 2895 3313 0 323 242 63 0 chr11 15829526 15829623 -132953849 + MIR SINE MIR 96 192 -63 512 328 65 5 chr11 15830762 15830972 -132952500 - MIR SINE MIR -35 227 7 246 32 0 0 chr11 15831696 15831727 -132951745 + (CA)n Simple_repeat Simple_repeat 2 32 0 813 252 14 14 chr11 15832683 15832893 -132950579 - MIR SINE MIR -1 261 52 320 374 47 26 chr11 15832916 15833106 -132950366 + L2 LINE L2 3073 3266 -6 368 368 12 6 chr11 15833168 15833339 -132950133 - MIR SINE MIR -14 248 77 441 333 80 51 chr11 15833409 15834076 -132949396 - L2 LINE L2 -171 3101 2405 186 71 0 0 chr11 15834317 15834345 -132949127 + (CA)n Simple_repeat Simple_repeat 1 28 0 324 200 0 0 chr11 15836198 15836253 -132947219 - L2 LINE L2 -8 3305 3251 203 297 9 126 chr11 15836289 15836400 -132947072 - L2 LINE L2 -15 3257 3160 515 270 29 1 chr11 15836429 15836578 -132946894 - MIR SINE MIR -65 143 20 514 269 71 39 chr11 15837673 15837855 -132945617 + MIR SINE MIR 24 211 -51 189 175 0 0 chr11 15837987 15838027 -132945445 + (TTA)n Simple_repeat Simple_repeat 2 41 0 182 271 85 0 chr11 15838327 15838386 -132945086 - L2 LINE L2 -1 3271 3208 585 155 0 42 chr11 15838435 15838577 -132944895 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 291 274 36 12 chr11 15839504 15839588 -132943884 - MIR3 SINE MIR -12 196 111 182 333 23 46 chr11 15839616 15839703 -132943769 + L2 LINE L2 3178 3262 -10 376 262 107 16 chr11 15840009 15840131 -132943341 + L2 LINE L2 3181 3313 0 556 262 71 0 chr11 15840155 15840323 -132943149 + MER117 DNA MER1_type 14 193 -4 306 315 91 30 chr11 15841551 15841716 -132941756 + MIR SINE MIR 2 177 -31 210 333 18 45 chr11 15842009 15842120 -132941352 - MIR SINE MIR -68 140 44 561 262 0 20 chr11 15842523 15842672 -132940800 - L2 LINE L2 -1 3312 3167 1298 231 16 80 chr11 15843022 15843460 -132940012 + MLT1C LTR MaLR 1 410 -57 197 229 62 0 chr11 15843475 15843523 -132939949 - L2 LINE L2 -254 3059 3009 454 228 197 21 chr11 15843658 15843851 -132939621 + MIR SINE MIR 35 261 -1 362 263 35 76 chr11 15844529 15844700 -132938772 - L2 LINE L2 0 3313 3150 228 35 0 0 chr11 15845765 15845794 -132937678 + (GA)n Simple_repeat Simple_repeat 1 29 0 299 341 0 0 chr11 15846399 15846481 -132936991 + L3 LINE CR1 1416 1497 -80 216 262 155 12 chr11 15846704 15846788 -132936684 - MIR SINE MIR -77 131 36 642 291 49 45 chr11 15847072 15847203 -132936269 + MIR SINE MIR 18 152 -110 2275 103 3 13 chr11 15847203 15847513 -132935959 + AluSx SINE Alu 1 307 -5 642 291 49 45 chr11 15847513 15847625 -132935847 + MIR SINE MIR 152 262 0 683 290 60 11 chr11 15847779 15848247 -132935225 - LTR33 LTR ERVL -3 518 1 211 261 196 65 chr11 15849678 15849816 -132933656 + MIR SINE MIR 33 188 -74 4318 211 28 68 chr11 15850141 15850461 -132933011 + L1MC4 LINE L1 6750 7081 -961 243 0 0 0 chr11 15850461 15850488 -132932984 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 4318 211 28 68 chr11 15850488 15851485 -132931987 + L1MC4 LINE L1 7081 8015 -27 21 0 0 0 chr11 15851513 15851534 -132931938 + AT_rich Low_complexity Low_complexity 1 21 0 538 301 40 61 chr11 15851930 15852226 -132931246 - MLT1I LTR MaLR 0 409 120 202 336 14 43 chr11 15853914 15854054 -132929418 + L2 LINE L2 2376 2511 -803 1659 199 0 23 chr11 15854196 15854502 -132928970 - AluJo SINE Alu -13 299 1 342 256 137 48 chr11 15854994 15855245 -132928227 + MLT1G LTR MaLR 19 296 -294 333 140 0 0 chr11 15856397 15856454 -132927018 + (A)n Simple_repeat Simple_repeat 1 57 0 1976 144 44 0 chr11 15856985 15857283 -132926189 - AluJo SINE Alu -1 311 1 361 350 7 21 chr11 15857839 15857979 -132925493 - MIR3 SINE MIR -48 160 23 33 0 0 0 chr11 15858780 15858813 -132924659 + AT_rich Low_complexity Low_complexity 1 33 0 316 343 89 18 chr11 15858830 15858999 -132924473 - L2 LINE L2 0 3313 3133 237 305 86 62 chr11 15859106 15859152 -132924320 + MIR SINE MIR 82 125 -137 2408 170 19 12 chr11 15859152 15859575 -132923897 - MSTB LTR MaLR 0 426 1 237 305 86 62 chr11 15859575 15859656 -132923816 + MIR SINE MIR 125 212 -50 228 67 0 0 chr11 15861756 15861786 -132921686 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 267 0 33 chr11 15863043 15863103 -132920369 + L3 LINE CR1 1519 1576 -1 5476 56 10 0 chr11 15863228 15863910 -132919562 - L1PA7 LINE L1 -11 6143 5455 1485 82 0 0 chr11 15863910 15864129 -132919343 + L1P LINE L1 4999 5217 -929 690 341 52 30 chr11 15865252 15865659 -132917813 - L3 LINE CR1 -482 1095 680 184 365 0 0 chr11 15865916 15865979 -132917493 - L3 LINE CR1 -1018 559 497 324 317 59 21 chr11 15866240 15866431 -132917041 - MIR SINE MIR -55 153 11 515 220 70 149 chr11 15867983 15868224 -132915248 - MER58A DNA MER1_type 0 224 3 282 281 86 39 chr11 15868601 15868729 -132914743 + MIR SINE MIR 88 221 -41 306 324 84 25 chr11 15869102 15869232 -132914240 + MIR SINE MIR 31 152 -110 1802 183 22 17 chr11 15869232 15869592 -132913880 + MLT1A1 LTR MaLR 4 365 0 306 324 84 25 chr11 15869592 15869618 -132913854 + MIR SINE MIR 152 175 -87 1688 201 28 8 chr11 15869618 15869976 -132913496 - MLT1A1 LTR MaLR 0 365 1 306 324 84 25 chr11 15869976 15870024 -132913448 + MIR SINE MIR 175 251 -11 385 279 108 0 chr11 15870514 15870625 -132912847 - L3 LINE CR1 -64 1513 1391 350 337 26 16 chr11 15870650 15870840 -132912632 - L3 LINE CR1 -802 775 584 242 317 89 0 chr11 15871300 15871394 -132912078 + MIR SINE MIR 48 146 -62 231 341 83 21 chr11 15872130 15872561 -132910911 - L1MC/D LINE L1 -2059 5749 5292 742 310 112 41 chr11 15872638 15873247 -132910225 - L1MC/D LINE L1 -1011 5135 4484 315 229 159 32 chr11 15873334 15873491 -132909981 - L1 LINE L1 -1793 4353 4177 1812 198 50 50 chr11 15873533 15874038 -132909434 - MLT1D LTR MaLR 0 505 1 341 245 123 9 chr11 15874369 15874475 -132908997 + L2 LINE L2 3192 3309 -4 258 312 25 54 chr11 15874678 15874992 -132908480 - HAL1b LINE L1 -547 801 497 228 241 52 60 chr11 15875020 15875136 -132908336 - HAL1b LINE L1 -930 418 304 249 376 0 0 chr11 15876796 15876905 -132906567 + MIR3 SINE MIR 77 185 -23 802 254 87 33 chr11 15878018 15878317 -132905155 - MLT1J2 LTR MaLR -135 315 1 251 283 181 22 chr11 15879373 15879511 -132903961 - MIR SINE MIR -6 256 97 388 248 71 18 chr11 15879955 15880068 -132903404 + MIR SINE MIR 18 136 -72 442 269 130 51 chr11 15881281 15881632 -132901840 + MLT1I LTR MaLR 68 409 0 409 257 238 20 chr11 15881819 15882021 -132901451 - MIR SINE MIR -6 256 11 557 243 45 45 chr11 15882699 15882901 -132900571 + MIR SINE MIR 48 249 -13 285 315 11 0 chr11 15882913 15883005 -132900467 + L2 LINE L2 3221 3313 0 304 331 58 69 chr11 15884799 15885059 -132898413 - L1MC/D LINE L1 -2232 5576 5320 25 31 0 0 chr11 15885253 15885285 -132898187 + AT_rich Low_complexity Low_complexity 1 32 0 296 322 11 0 chr11 15885547 15885634 -132897838 + MIR3 SINE MIR 115 202 -6 394 254 75 37 chr11 15887305 15887439 -132896033 + MIR SINE MIR 116 254 -8 468 258 39 0 chr11 15888194 15888322 -132895150 + MIR SINE MIR 120 252 -10 283 250 15 0 chr11 15888331 15888399 -132895073 + (CAT)n Simple_repeat Simple_repeat 3 71 0 298 345 112 9 chr11 15889362 15889478 -132893994 + MIR3 SINE MIR 3 130 -78 658 229 14 106 chr11 15889485 15889703 -132893769 + MIR SINE MIR 3 200 -62 426 231 0 0 chr11 15889728 15889806 -132893666 + L2 LINE L2 3191 3268 -45 233 321 44 51 chr11 15890078 15890215 -132893257 + MIR3 SINE MIR 43 178 -30 1885 139 66 0 chr11 15890442 15890730 -132892742 - AluJb SINE Alu -5 307 1 740 257 48 0 chr11 15890906 15891093 -132892379 - MER117 DNA MER1_type -1 196 1 267 321 18 4 chr11 15892084 15892180 -132891292 + MIR3 SINE MIR 94 173 -35 1087 323 45 27 chr11 15892882 15893368 -132890104 + MLT1K LTR MaLR 31 525 -63 1177 129 0 25 chr11 15893369 15893570 -132889902 + L1PB1 LINE L1 5956 6151 0 237 264 0 0 chr11 15893599 15893671 -132889801 + MLT1K LTR MaLR 517 588 0 206 227 0 171 chr11 15894046 15894134 -132889338 + MIR SINE MIR 20 92 -170 203 301 2 0 chr11 15894164 15894222 -132889250 + MIR SINE MIR 90 140 -68 * 429 324 87 49 chr11 15894221 15894507 -132888965 + L2 LINE L2 2588 2862 -410 796 261 92 4 chr11 15894507 15894745 -132888727 - MIR SINE MIR -2 260 2 429 324 87 49 chr11 15894745 15894787 -132888685 + L2 LINE L2 2862 2901 -371 1833 201 111 32 chr11 15894787 15895255 -132888217 + MLT1D LTR MaLR 1 505 0 429 324 87 49 chr11 15895255 15895421 -132888051 + L2 LINE L2 2901 3059 -213 2140 140 0 3 chr11 15895421 15895735 -132887737 - AluSq SINE Alu 0 313 1 429 324 87 49 chr11 15895735 15895915 -132887557 + L2 LINE L2 3059 3272 0 187 247 71 59 chr11 15895926 15896011 -132887461 + MIR SINE MIR 163 248 -14 291 338 54 7 chr11 15897012 15897160 -132886312 + MLT1L LTR MaLR 1 155 -460 306 0 0 0 chr11 15897160 15897194 -132886278 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 940 290 179 22 chr11 15897203 15898082 -132885390 - L2 LINE L2 -23 3290 2257 420 82 0 0 chr11 15898210 15898271 -132885201 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 429 310 25 13 chr11 15898330 15898488 -132884984 + MIR3 SINE MIR 38 197 -11 288 314 57 16 chr11 15898493 15898617 -132884855 + MIR SINE MIR 19 147 -115 252 86 0 0 chr11 15898743 15898778 -132884694 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 271 71 12 chr11 15898983 15899068 -132884404 + MIR SINE MIR 155 244 -18 239 200 73 0 chr11 15899920 15899975 -132883497 - MLT1I LTR MaLR 0 409 351 205 322 17 17 chr11 15900152 15900211 -132883261 + L2 LINE L2 3128 3186 -86 252 270 110 0 chr11 15900561 15900661 -132882811 - L2 LINE L2 -8 3264 3154 667 264 163 22 chr11 15900702 15900929 -132882543 - MIR SINE MIR 0 262 4 333 47 47 16 chr11 15901507 15901571 -132881901 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 631 263 95 33 chr11 15901837 15902080 -132881392 - MIR SINE MIR 0 262 5 186 118 0 0 chr11 15902286 15902320 -132881152 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 213 290 11 32 chr11 15902814 15902907 -132880565 + GA-rich Low_complexity Low_complexity 2 92 0 289 208 31 62 chr11 15903147 15903243 -132880229 + L2 LINE L2 3020 3112 -160 498 316 10 10 chr11 15903370 15903563 -132879909 + MIR SINE MIR 40 232 -30 243 211 42 56 chr11 15903598 15903669 -132879803 + L2 LINE L2 3244 3313 0 227 154 0 19 chr11 15904446 15904498 -132878974 + (CA)n Simple_repeat Simple_repeat 1 51 0 197 215 31 62 chr11 15905702 15905767 -132877705 - L2 LINE L2 -1 3271 3209 224 215 0 77 chr11 15906712 15906777 -132876695 + MIR SINE MIR 16 75 -187 180 74 0 0 chr11 15906839 15906866 -132876606 + L2 LINE L2 3275 3301 -12 356 286 79 8 chr11 15907036 15907162 -132876310 - L2 LINE L2 -1 3271 3137 2244 92 0 33 chr11 15907198 15907501 -132875971 + AluSg SINE Alu 1 293 -17 339 330 73 18 chr11 15907617 15907835 -132875637 - MIR SINE MIR -13 249 20 215 250 15 0 chr11 15907979 15908047 -132875425 + (TA)n Simple_repeat Simple_repeat 1 69 0 632 271 63 27 chr11 15908121 15908453 -132875019 - L1ME4a LINE L1 -205 5916 5573 506 234 108 13 chr11 15909402 15909560 -132873912 + MIR SINE MIR 77 249 -13 393 294 112 23 chr11 15910006 15910220 -132873252 + MIR SINE MIR 19 251 -11 450 270 96 55 chr11 15910223 15910651 -132872821 - MLT1K LTR MaLR 0 588 165 212 0 0 35 chr11 15911020 15911049 -132872423 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1733 43 0 0 chr11 15911050 15911259 -132872213 - L1PA4 LINE L1 -3 6152 5944 223 300 0 0 chr11 15911396 15911456 -132872016 + CT-rich Low_complexity Low_complexity 3 62 0 222 345 0 27 chr11 15912065 15912175 -132871297 + CT-rich Low_complexity Low_complexity 1 107 0 274 275 46 55 chr11 15912556 15912665 -132870807 - MIR SINE MIR -70 192 85 210 192 8 77 chr11 15913049 15913056 -132870416 + (TA)n Simple_repeat Simple_repeat 2 8 -114 2069 163 21 0 chr11 15913056 15913393 -132870079 + MER2 DNA MER2_type 1 344 0 210 192 8 77 chr11 15913393 15913515 -132869957 + (TA)n Simple_repeat Simple_repeat 8 122 0 1107 185 0 5 chr11 15913656 15913845 -132869627 - MER5A DNA MER1_type -1 188 1 342 277 180 24 chr11 15914125 15914331 -132869141 - MIR SINE MIR -8 254 17 1189 84 0 11 chr11 15914755 15914805 -132868667 + (GGAA)n Simple_repeat Simple_repeat 1 225 0 1189 84 0 11 chr11 15914805 15914983 -132868489 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 1332 219 93 26 chr11 15915440 15915893 -132867579 + HAL1b LINE L1 232 714 -634 215 30 0 30 chr11 15916046 15916079 -132867393 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1217 257 87 30 chr11 15916132 15916707 -132866765 + HAL1b LINE L1 737 1344 -4 395 214 8 51 chr11 15917141 15917258 -132866214 - MIR SINE MIR -81 127 16 470 295 24 24 chr11 15917618 15917784 -132865688 + MIR3 SINE MIR 34 199 -9 502 200 90 115 chr11 15918691 15918891 -132864581 - MIR SINE MIR -54 208 14 278 49 0 24 chr11 15921189 15921230 -132862242 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2124 106 3 7 chr11 15921234 15921703 -132861769 - AluSg SINE Alu 0 468 1 302 254 36 45 chr11 15921737 15921847 -132861625 + L2 LINE L2 2945 3053 -219 218 179 0 0 chr11 15922238 15922277 -132861195 + (TATG)n Simple_repeat Simple_repeat 3 41 0 383 298 130 53 chr11 15923003 15923212 -132860260 - L1ME4a LINE L1 -279 5842 5651 2329 88 10 0 chr11 15923212 15923509 -132859963 + AluSq SINE Alu 1 300 -13 383 298 130 53 chr11 15923509 15923938 -132859534 - L1ME4a LINE L1 -470 5651 5383 776 267 42 33 chr11 15923987 15924227 -132859245 + MLT1E LTR MaLR 1 242 -351 301 294 28 9 chr11 15924514 15924623 -132858849 + L2 LINE L2 3154 3264 -8 259 312 89 25 chr11 15925212 15925369 -132858103 - MIR3 SINE MIR -29 179 13 581 228 32 25 chr11 15925771 15925929 -132857543 - MER91B DNA MER1_type -6 184 26 2315 223 82 31 chr11 15927228 15927826 -132855646 + L1ME3 LINE L1 5405 6044 -118 1212 228 4 12 chr11 15927826 15928067 -132855405 + MER8 DNA MER2_type 1 239 0 2315 223 82 31 chr11 15928067 15928149 -132855323 + L1ME3 LINE L1 6044 6120 -42 811 174 120 0 chr11 15928212 15928379 -132855093 + MER5A DNA MER1_type 3 189 0 270 265 31 20 chr11 15928379 15928477 -132854995 - MIR SINE MIR -91 171 73 1752 125 64 3 chr11 15928484 15928778 -132854694 - LTR62 LTR ERVK -1 718 407 2243 150 28 30 chr11 15928778 15929337 -132854135 - MLT2A2 LTR ERVL 0 554 1 2159 196 31 9 chr11 15929337 15929744 -132853728 - LTR62 LTR ERVK -303 416 1 425 263 38 15 chr11 15930121 15930254 -132853218 + L2 LINE L2 3178 3313 0 279 367 11 21 chr11 15930256 15930444 -132853028 - L2 LINE L2 -575 2739 2554 410 219 154 24 chr11 15930453 15930622 -132852850 + MIR SINE MIR 66 256 -6 2068 132 0 19 chr11 15930775 15931093 -132852379 - AluSx SINE Alu 0 312 1 626 264 84 16 chr11 15932712 15932865 -132850607 - MLT1K LTR MaLR 0 588 410 267 31 0 0 chr11 15932865 15932897 -132850575 + (TC)n Simple_repeat Simple_repeat 2 33 0 626 264 84 16 chr11 15932897 15932993 -132850479 - MLT1K LTR MaLR -178 410 322 207 298 117 80 chr11 15933114 15933322 -132850150 + L3 LINE CR1 1142 1341 -236 1140 225 126 18 chr11 15933322 15933656 -132849816 + MLT1A2 LTR MaLR 4 373 -1 207 298 117 80 chr11 15933656 15933833 -132849639 + L3 LINE CR1 1341 1541 -36 916 270 92 49 chr11 15934202 15934650 -132848822 - MLT1C LTR MaLR 0 467 1 2083 102 0 41 chr11 15935561 15935879 -132847593 - AluSx SINE Alu 0 306 1 237 284 0 0 chr11 15935880 15935947 -132847525 - MIR SINE MIR -112 150 84 1577 185 127 28 chr11 15938155 15938549 -132844923 - LTR40b LTR ERVL -27 435 3 206 286 18 0 chr11 15938839 15938895 -132844577 - L2 LINE L2 -2 3311 3255 1160 254 106 18 chr11 15938969 15939418 -132844054 - L2 LINE L2 -42 3271 2781 260 306 41 25 chr11 15939640 15939761 -132843711 - MIR3 SINE MIR -80 128 6 233 274 59 29 chr11 15941708 15941810 -132841662 + MLT1I LTR MaLR 39 143 -266 381 180 0 120 chr11 15941938 15942038 -132841434 + MLT1H LTR MaLR 431 518 -31 212 251 6 132 chr11 15942691 15942858 -132840614 + MIR SINE MIR 86 231 -31 549 295 24 6 chr11 15943022 15943188 -132840284 + MIR SINE MIR 20 188 -74 899 223 149 0 chr11 15945717 15945932 -132837540 - MIR SINE MIR 0 262 16 307 273 0 0 chr11 15945964 15946030 -132837442 - L2 LINE L2 -216 3056 2991 697 223 153 0 chr11 15946256 15946413 -132837059 + MER5A DNA MER1_type 9 189 0 242 236 82 73 chr11 15946436 15946546 -132836926 - MIR3 SINE MIR -89 119 9 481 287 37 7 chr11 15946892 15947028 -132836444 + MIR SINE MIR 29 168 -94 666 270 69 26 chr11 15948015 15948248 -132835224 - MIR SINE MIR -13 249 7 233 371 28 42 chr11 15948346 15948559 -132834913 - L3 LINE CR1 -437 1140 931 24 0 0 0 chr11 15948847 15948871 -132834601 + AT_rich Low_complexity Low_complexity 1 24 0 284 318 12 0 chr11 15949402 15949487 -132833985 - MIR SINE MIR -86 122 37 891 282 109 16 chr11 15949616 15950176 -132833296 - L2 LINE L2 -78 3235 2625 413 243 158 7 chr11 15950179 15950331 -132833141 - MIR SINE MIR -65 197 23 416 233 47 23 chr11 15950462 15950591 -132832881 - MIR SINE MIR -6 256 125 210 304 0 29 chr11 15951378 15951447 -132832025 - L2 LINE L2 -17 3296 3230 519 240 34 67 chr11 15952278 15952457 -132831015 - MER5B DNA MER1_type -4 174 2 386 352 56 5 chr11 15952464 15952660 -132830812 + MIR SINE MIR 36 241 -21 359 276 0 0 chr11 15953677 15953753 -132829719 + MER5C DNA MER1_type 1 76 -248 235 214 214 12 chr11 15954621 15954705 -132828767 + MIR SINE MIR 71 171 -91 201 305 268 11 chr11 15954691 15954881 -132828591 + L3 LINE CR1 1335 1573 -4 * 1225 205 114 40 chr11 15955299 15955694 -132827778 - MLT1C LTR MaLR -8 459 36 1599 186 38 51 chr11 15955749 15956119 -132827353 + MLT1A1 LTR MaLR 1 365 0 216 260 20 0 chr11 15956126 15956176 -132827296 + L2 LINE L2 3258 3308 -5 288 298 114 0 chr11 15956197 15956311 -132827161 - L2 LINE L2 -8 3264 3138 193 256 244 47 chr11 15956325 15956411 -132827061 + MIR SINE MIR 52 154 -108 943 232 55 25 chr11 15957235 15957390 -132826082 + MIR SINE MIR 1 167 -95 2236 125 27 6 chr11 15957390 15957727 -132825745 - MER2 DNA MER2_type 0 344 1 943 232 55 25 chr11 15957727 15957808 -132825664 + MIR SINE MIR 167 244 -18 289 295 67 19 chr11 15957901 15958006 -132825466 + L2 LINE L2 3162 3271 -1 1455 214 147 24 chr11 15958125 15958614 -132824858 + MLT1F1 LTR MaLR 20 567 0 494 281 78 6 chr11 15958764 15958931 -132824541 + MIR SINE MIR 46 224 -38 649 311 82 20 chr11 15959010 15959364 -132824108 - L2 LINE L2 -1 3312 2937 662 208 16 0 chr11 15959365 15959490 -132823982 - L2 LINE L2 -3 3310 3184 644 303 96 13 chr11 15959515 15959972 -132823500 - L2 LINE L2 -252 3061 2553 778 234 42 33 chr11 15960069 15960283 -132823189 + MIR SINE MIR 10 225 -37 188 244 0 0 chr11 15960249 15960290 -132823182 - L2 LINE L2 -368 2945 2905 * 2114 150 18 3 chr11 15960717 15961057 -132822415 + MER7A DNA MER2_type 4 346 0 227 274 137 10 chr11 15961157 15961259 -132822213 + LTR33 LTR ERVL 6 120 -401 277 214 22 45 chr11 15961347 15961436 -132822036 + LTR33 LTR ERVL 358 444 -77 187 324 88 29 chr11 15962175 15962277 -132821195 - L3 LINE CR1 -114 1463 1356 200 239 70 28 chr11 15962507 15962578 -132820894 - L2 LINE L2 -3 3310 3237 2222 160 22 3 chr11 15962775 15963132 -132820340 - THE1B LTR MaLR 0 364 1 320 252 72 27 chr11 15963315 15963426 -132820046 - L3 LINE CR1 -108 1469 1354 393 39 0 0 chr11 15963522 15963573 -132819899 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 15964258 15964279 -132819193 + AT_rich Low_complexity Low_complexity 1 21 0 759 287 39 88 chr11 15964519 15965055 -132818417 + LTR67 LTR ERVL 23 532 -25 395 320 53 7 chr11 15966831 15966981 -132816491 - MIR SINE MIR -83 179 23 248 133 17 0 chr11 15967299 15967359 -132816113 + (CA)n Simple_repeat Simple_repeat 1 61 0 426 144 11 64 chr11 15967387 15967575 -132815897 + (CA)n Simple_repeat Simple_repeat 2 179 0 250 273 16 16 chr11 15967605 15967726 -132815746 + (CA)n Simple_repeat Simple_repeat 1 121 0 188 67 33 0 chr11 15967737 15967767 -132815705 + (CA)n Simple_repeat Simple_repeat 1 31 0 216 192 35 29 chr11 15967793 15967965 -132815507 + (CA)n Simple_repeat Simple_repeat 1 173 0 494 161 22 7 chr11 15968026 15968163 -132815309 + (CA)n Simple_repeat Simple_repeat 2 140 0 349 93 21 98 chr11 15968184 15968377 -132815095 + (CA)n Simple_repeat Simple_repeat 2 179 0 350 242 92 121 chr11 15968670 15968943 -132814529 - L1ME4a LINE L1 -2 6119 5855 637 290 190 42 chr11 15968947 15969531 -132813941 - L2 LINE L2 0 3313 2628 1819 202 29 69 chr11 15969541 15970060 -132813412 + MLT1D LTR MaLR 8 505 0 181 257 80 107 chr11 15970060 15970247 -132813225 - L2 LINE L2 -686 2628 2447 487 239 43 17 chr11 15970274 15970391 -132813081 + L2 LINE L2 3149 3268 -4 1649 199 100 51 chr11 15972034 15972577 -132810895 + MLT1F1 LTR MaLR 1 567 0 428 300 23 15 chr11 15972649 15972779 -132810693 + MIR3 SINE MIR 39 169 -39 186 297 27 14 chr11 15972754 15972828 -132810644 - L2 LINE L2 -838 2476 2402 * 957 183 99 15 chr11 15973835 15974037 -132809435 - MER20 DNA MER1_type 0 219 1 231 125 0 0 chr11 15974158 15974198 -132809274 + (TC)n Simple_repeat Simple_repeat 2 41 0 267 31 0 0 chr11 15974198 15974230 -132809242 + (CA)n Simple_repeat Simple_repeat 1 32 0 319 246 45 63 chr11 15974253 15974396 -132809076 - MIR3 SINE MIR -85 123 2 1079 167 63 13 chr11 15974971 15975210 -132808262 + MER44D DNA MER2_type 1 521 -88 458 207 0 0 chr11 15975240 15975327 -132808145 - Tigger5 DNA MER2_type -2235 88 2 429 198 12 0 chr11 15975332 15975418 -132808054 + MER44D DNA MER2_type 619 705 0 704 218 153 72 chr11 15975479 15975879 -132807593 - MLT1H LTR MaLR -5 544 113 2361 237 43 34 chr11 15976560 15977006 -132806466 - L1ME1 LINE L1 -5 6161 5704 1831 186 64 3 chr11 15977006 15977350 -132806122 + MLT1A1 LTR MaLR 1 365 0 2361 237 43 34 chr11 15977350 15977642 -132805830 - L1ME1 LINE L1 -462 5704 5416 287 263 25 12 chr11 15977672 15977752 -132805720 + MLT1J LTR MaLR 70 150 -361 530 303 78 76 chr11 15979218 15979653 -132803819 + L2 LINE L2 2836 3271 -1 202 229 42 0 chr11 15979659 15979707 -132803765 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 452 298 58 26 chr11 15979724 15979915 -132803557 + L2 LINE L2 3117 3313 0 444 19 0 0 chr11 15980189 15980242 -132803230 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2173 119 0 0 chr11 15980242 15980528 -132802944 - AluSq SINE Alu -27 286 1 26 0 0 0 chr11 15980528 15980554 -132802918 + AT_rich Low_complexity Low_complexity 1 26 0 209 205 0 0 chr11 15981151 15981190 -132802282 + GA-rich Low_complexity Low_complexity 2 40 0 510 163 0 0 chr11 15981195 15981293 -132802179 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 331 261 80 51 chr11 15981801 15981939 -132801533 - MIR SINE MIR -46 216 75 2463 64 0 3 chr11 15982606 15982902 -132800570 + AluY SINE Alu 1 295 -16 2124 134 3 10 chr11 15983410 15983708 -132799764 + AluSx SINE Alu 1 296 -16 233 293 23 58 chr11 15984440 15984614 -132798858 + L1ME4a LINE L1 5618 5785 -336 559 16 0 0 chr11 15984724 15984788 -132798684 + L1PA5 LINE L1 6078 6141 -13 21 0 0 0 chr11 15984788 15984809 -132798663 + AT_rich Low_complexity Low_complexity 1 21 0 676 286 112 40 chr11 15985623 15985972 -132797500 + MLT1J LTR MaLR 35 408 -103 333 238 168 0 chr11 15986446 15986547 -132796925 + L1ME4a LINE L1 6003 6120 -1 2339 208 35 65 chr11 15986607 15987178 -132796294 + MLT2B3 LTR ERVL 1 554 0 474 317 110 6 chr11 15987278 15987442 -132796030 - MIR SINE MIR -35 227 47 360 225 78 110 chr11 15987539 15987730 -132795742 - MLT1K LTR MaLR -6 582 398 404 296 138 28 chr11 15987777 15988024 -132795448 - MLT1K LTR MaLR -271 317 44 216 266 51 13 chr11 15988449 15988528 -132794944 - L2 LINE L2 -4 3309 3228 1370 204 77 79 chr11 15988585 15989051 -132794421 - MLT1C LTR MaLR -2 465 1 194 333 86 51 chr11 15989488 15989605 -132793867 + L2 LINE L2 3151 3271 -1 252 292 40 75 chr11 15989663 15989819 -132793653 + MIR SINE MIR 18 168 -61 410 348 34 20 chr11 15990742 15990946 -132792526 - L2 LINE L2 -160 3112 2906 302 237 126 22 chr11 15991458 15991593 -132791879 + L1MEd LINE L1 4 152 -5967 517 245 157 67 chr11 15991842 15992376 -132791096 + L1MEd LINE L1 650 1231 -4888 873 286 77 109 chr11 15992379 15992904 -132790568 + L1MEd LINE L1 1293 1777 -4533 2099 160 30 0 chr11 15992904 15993241 -132790231 + MER7A DNA MER2_type 2 346 0 873 286 77 109 chr11 15993241 15993640 -132789832 + L1MEd LINE L1 1777 2187 -4123 513 276 140 17 chr11 15993645 15994174 -132789298 + L1MEd LINE L1 2153 2746 -3383 218 116 23 0 chr11 15994235 15994278 -132789194 + (CCA)n Simple_repeat Simple_repeat 1 44 0 313 254 75 11 chr11 15994593 15994755 -132788717 + L1MEd LINE L1 3602 3767 -2362 210 333 71 30 chr11 15994784 15994883 -132788589 - MIR3 SINE MIR -36 172 70 312 250 53 0 chr11 15995076 15995152 -132788320 - MIR SINE MIR -59 203 124 315 0 0 0 chr11 15995480 15995515 -132787957 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 283 38 0 chr11 15995558 15995611 -132787861 + MIR SINE MIR 21 75 -133 974 258 127 50 chr11 15995824 15996287 -132787185 - MLT1J LTR MaLR -20 465 1 332 268 151 78 chr11 15997025 15997230 -132786242 - MIR SINE MIR -12 250 31 200 286 12 24 chr11 15997497 15997581 -132785891 + L2 LINE L2 3175 3257 -56 453 284 54 45 chr11 15997599 15997821 -132785651 + L2 LINE L2 3090 3313 0 486 337 21 14 chr11 15999437 15999672 -132783800 - MIR SINE MIR -25 237 3 241 256 37 0 chr11 16002266 16002348 -132781124 - MIR SINE MIR -4 258 174 188 274 107 0 chr11 16004249 16004333 -132779139 + L2 LINE L2 2943 3035 -237 612 192 42 0 chr11 16004500 16004620 -132778852 - MER96B DNA MER1_type? -1 416 292 387 194 0 0 chr11 16004642 16004735 -132778737 + (CA)n Simple_repeat Simple_repeat 2 94 0 188 245 245 10 chr11 16004904 16005006 -132778466 - MER5B DNA MER1_type -23 155 30 225 304 106 70 chr11 16005325 16005654 -132777818 - L2 LINE L2 -49 3264 2924 191 173 19 58 chr11 16006322 16006374 -132777098 - L2 LINE L2 -26 3287 3238 255 287 148 9 chr11 16006814 16006929 -132776543 + MIR SINE MIR 23 153 -109 205 357 0 0 chr11 16007180 16007278 -132776194 + L2 LINE L2 2968 3065 -248 2166 245 128 5 chr11 16007291 16008117 -132775355 - L1M4 LINE L1 -2118 4028 3101 362 261 103 24 chr11 16008322 16008487 -132774985 - MER117 DNA MER1_type -4 193 16 971 166 118 0 chr11 16009606 16009793 -132773679 - MER3 DNA MER1_type 0 209 1 181 290 65 0 chr11 16010387 16010449 -132773023 + L2 LINE L2 3248 3313 0 663 204 96 0 chr11 16010736 16010893 -132772579 - MER5A DNA MER1_type -1 188 17 234 306 20 20 chr11 16010897 16010995 -132772477 - MIR SINE MIR -153 109 12 228 322 0 0 chr11 16012053 16012112 -132771360 - L2 LINE L2 -574 2740 2682 2741 244 90 105 chr11 16012592 16013503 -132769969 + HAL1 LINE L1 7 930 -1577 233 56 0 28 chr11 16013503 16013539 -132769933 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2741 244 90 105 chr11 16013539 16014261 -132769211 + HAL1 LINE L1 930 1661 -846 2650 153 7 16 chr11 16014261 16014691 -132768781 - MSTB LTR MaLR 0 426 1 2741 244 90 105 chr11 16014691 16015184 -132768288 + HAL1 LINE L1 1661 2104 -403 2404 123 25 6 chr11 16015184 16015541 -132767931 + THE1B LTR MaLR 1 364 0 2741 244 90 105 chr11 16015541 16015572 -132767900 + HAL1 LINE L1 2104 2134 -373 380 256 22 122 chr11 16015593 16015863 -132767609 + HAL1 LINE L1 2265 2507 0 758 298 63 44 chr11 16016008 16016608 -132766864 + L2 LINE L2 2665 3313 0 410 219 126 33 chr11 16016620 16016771 -132766701 - MIR SINE MIR -71 191 27 584 201 26 124 chr11 16016856 16017050 -132766422 + MER5B DNA MER1_type 4 178 0 21 57 0 0 chr11 16017369 16017404 -132766068 + AT_rich Low_complexity Low_complexity 1 35 0 875 232 53 29 chr11 16017411 16017459 -132766013 - MER58A DNA MER1_type -2208 212 167 2278 119 121 16 chr11 16017459 16017846 -132765626 - MSTA LTR MaLR 0 428 1 875 232 53 29 chr11 16017846 16018004 -132765468 - MER58A DNA MER1_type -2253 167 1 195 288 144 24 chr11 16018281 16018406 -132765066 - L2 LINE L2 0 3272 3133 964 253 131 17 chr11 16018632 16019094 -132764378 + MLT1K LTR MaLR 23 575 -13 28 79 0 0 chr11 16020259 16020322 -132763150 + AT_rich Low_complexity Low_complexity 1 63 0 1494 102 9 14 chr11 16020716 16020932 -132762540 + AluSg/x SINE Alu 96 310 -2 1229 276 85 39 chr11 16021377 16021942 -132761530 + MLT1G1 LTR MaLR 5 595 0 2100 101 47 7 chr11 16022026 16022322 -132761150 - AluSp SINE Alu -5 308 1 476 185 44 109 chr11 16022333 16022570 -132760902 + MER106B DNA MER1_type 6 1055 -4 302 296 0 0 chr11 16022648 16022729 -132760743 + MIR SINE MIR 73 153 -109 219 111 28 0 chr11 16023125 16023161 -132760311 - MIR SINE MIR -11 251 215 209 343 39 0 chr11 16023262 16023364 -132760108 - L2 LINE L2 -221 3051 2946 201 376 0 0 chr11 16024198 16024283 -132759189 + MIR SINE MIR 37 121 -87 211 250 0 0 chr11 16024427 16024471 -132759001 - MER5A DNA MER1_type -137 52 9 1596 177 14 14 chr11 16025330 16025624 -132757848 - AluSx SINE Alu -18 294 1 245 305 141 0 chr11 16025857 16025985 -132757487 - L2 LINE L2 -6 3307 3162 399 291 138 0 chr11 16026574 16026777 -132756695 - MIR SINE MIR -29 233 3 255 254 17 0 chr11 16030272 16030331 -132753141 + CT-rich Low_complexity Low_complexity 1 60 0 189 0 0 0 chr11 16030346 16030367 -132753105 + (T)n Simple_repeat Simple_repeat 1 21 0 206 286 0 14 chr11 16031705 16031775 -132751697 + GA-rich Low_complexity Low_complexity 3 71 0 246 62 0 0 chr11 16033871 16033903 -132749569 + (CAA)n Simple_repeat Simple_repeat 2 33 0 486 283 70 27 chr11 16035943 16036130 -132747342 - MIR SINE MIR -17 245 51 500 272 83 28 chr11 16036622 16036802 -132746670 + MIR SINE MIR 22 211 -51 5763 249 68 96 chr11 16037126 16040322 -132743150 + L2 LINE L2 194 3309 -4 406 326 19 66 chr11 16040377 16040635 -132742837 + L3 LINE CR1 1215 1460 -117 505 223 16 171 chr11 16042123 16042428 -132741044 - MIR SINE MIR -3 259 2 506 293 68 11 chr11 16042501 16042692 -132740780 + MIR SINE MIR 46 247 -15 1470 141 24 8 chr11 16042752 16043001 -132740471 + MER2 DNA MER2_type 11 263 -82 288 151 245 0 chr11 16043065 16043118 -132740354 + MER2 DNA MER2_type 280 345 0 2797 261 111 51 chr11 16093392 16094891 -132688581 - HAL1 LINE L1 -918 1589 1 209 33 33 0 chr11 16095389 16095419 -132688053 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2204 100 0 17 chr11 16095422 16095722 -132687750 - AluSc SINE Alu -14 295 1 2173 148 9 15 chr11 16095766 16096105 -132687367 - MER1B DNA MER1_type 0 337 1 911 194 0 0 chr11 16096106 16096271 -132687201 + L1MD2 LINE L1 6166 6330 -29 558 309 99 9 chr11 16096336 16096569 -132686903 + MIR SINE MIR 3 256 -6 204 40 0 0 chr11 16096576 16096601 -132686871 + (CAT)n Simple_repeat Simple_repeat 3 27 0 301 286 43 36 chr11 16097067 16097207 -132686265 + MIR3 SINE MIR 20 160 -48 842 179 5 70 chr11 16097208 16097409 -132686063 + MER5A DNA MER1_type 2 189 0 668 217 14 7 chr11 16097429 16097567 -132685905 - MER5A DNA MER1_type -49 140 2 182 305 0 34 chr11 16097567 16097615 -132685857 + L3 LINE CR1 1527 1572 -5 207 253 0 51 chr11 16099038 16099117 -132684355 + GA-rich Low_complexity Low_complexity 1 75 0 182 37 37 0 chr11 16100149 16100176 -132683296 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 643 158 30 0 chr11 16100189 16100354 -132683118 + CT-rich Low_complexity Low_complexity 1 170 0 244 354 9 44 chr11 16101486 16101599 -132681873 - L2 LINE L2 0 3272 3164 275 281 191 0 chr11 16102394 16102483 -132680989 + L2 LINE L2 3208 3313 0 272 225 214 11 chr11 16103869 16103958 -132679514 - L2 LINE L2 0 3313 3207 261 224 0 40 chr11 16103968 16104044 -132679428 + L1MC4 LINE L1 6630 6702 -1340 858 302 27 59 chr11 16104044 16104590 -132678882 - L2 LINE L2 -139 3174 2593 765 0 0 0 chr11 16105499 16105584 -132677888 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 275 173 50 173 chr11 16107926 16108065 -132675407 - MIR3 SINE MIR -6 202 81 238 340 3 3 chr11 16108254 16108362 -132675110 - MIR3 SINE MIR -53 155 47 2118 117 0 22 chr11 16108389 16108705 -132674767 - AluSp SINE Alu -1 312 4 2199 232 44 25 chr11 16109093 16109803 -132673669 + L1ME1 LINE L1 3750 4472 -1674 1062 171 34 0 chr11 16109810 16110015 -132673457 + L1MA9 LINE L1 6067 6278 -34 * 2566 243 82 14 chr11 16109998 16111493 -132671979 + L1ME1 LINE L1 4432 6035 -131 447 290 16 32 chr11 16111601 16111725 -132671747 - MIR SINE MIR -92 170 49 356 138 15 0 chr11 16111768 16111833 -132671639 + GA-rich Low_complexity Low_complexity 2 67 0 484 313 38 33 chr11 16111936 16112147 -132671325 - MIR SINE MIR -5 257 46 682 327 103 27 chr11 16112262 16112629 -132670843 - L3 LINE CR1 -5 1572 1178 22 0 0 0 chr11 16112665 16112687 -132670785 + AT_rich Low_complexity Low_complexity 1 22 0 1758 169 3 7 chr11 16116927 16117256 -132666216 + AluJb SINE Alu 1 312 0 257 313 36 0 chr11 16118222 16118305 -132665167 - MIR SINE MIR 0 262 177 185 296 0 19 chr11 16118304 16118358 -132665114 + MIR SINE MIR 90 142 -120 * 185 339 0 0 chr11 16119428 16119484 -132663988 - L2 LINE L2 -12 3260 3205 217 393 87 0 chr11 16119545 16119718 -132663754 + L2 LINE L2 3116 3303 -10 4471 183 9 2 chr11 16119973 16120879 -132662593 + L1 LINE L1 4323 5234 -912 28 48 0 0 chr11 16121436 16121478 -132661994 + AT_rich Low_complexity Low_complexity 1 42 0 304 302 119 48 chr11 16121598 16121724 -132661748 - MIR3 SINE MIR -23 185 51 414 0 0 0 chr11 16122241 16122287 -132661185 + (TA)n Simple_repeat Simple_repeat 1 46 0 353 270 61 9 chr11 16122447 16122562 -132660910 - MIR SINE MIR -6 256 136 26 0 0 0 chr11 16122596 16122622 -132660850 + AT_rich Low_complexity Low_complexity 1 26 0 5498 171 34 13 chr11 16123186 16125296 -132658176 + L1M1 LINE L1 3617 5807 -497 2726 108 3 5 chr11 16125396 16125784 -132657688 + THE1B-int LTR MaLR 1194 1580 0 2599 101 3 6 chr11 16125784 16126149 -132657323 + THE1B LTR MaLR 1 364 0 1233 101 0 39 chr11 16126149 16126356 -132657116 + L1MA2 LINE L1 6106 6304 0 201 39 0 0 chr11 16126621 16126647 -132656825 + (TAGGG)n Simple_repeat Simple_repeat 5 30 0 382 373 52 12 chr11 16127259 16127511 -132655961 + L2 LINE L2 2995 3256 -16 1186 31 13 0 chr11 16127956 16128115 -132655357 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 2093 101 7 0 chr11 16129269 16129591 -132653881 - AluSg SINE Alu 0 324 1 1172 216 39 12 chr11 16129647 16129901 -132653571 - MIR SINE MIR 0 262 2 2853 138 40 0 chr11 16130045 16130493 -132652979 + Tigger1 DNA MER2_type 1 466 -1952 * 8613 116 37 30 chr11 16130488 16131635 -132651837 + Tigger1 DNA MER2_type 1014 2151 -267 1789 112 0 4 chr11 16131635 16131886 -132651586 - AluSc SINE Alu -21 288 39 8613 116 37 30 chr11 16131886 16132015 -132651457 + Tigger1 DNA MER2_type 2151 2278 -140 1400 177 0 113 chr11 16132015 16132342 -132651130 - AluJo SINE Alu -12 290 1 8613 116 37 30 chr11 16132342 16132458 -132651014 + Tigger1 DNA MER2_type 2278 2417 -1 1716 143 40 4 chr11 16132760 16133067 -132650405 + AluSx SINE Alu 1 317 0 2323 99 47 11 chr11 16133290 16133652 -132649820 + THE1C LTR MaLR 1 375 0 216 293 154 8 chr11 16133842 16133965 -132649507 - MIR SINE MIR -69 193 53 3618 220 114 38 chr11 16134000 16134159 -132649313 - L1MC4 LINE L1 -327 7715 7569 3507 31 0 0 chr11 16134159 16134578 -132648894 - L1PA4 LINE L1 -3 6152 5734 3618 220 114 38 chr11 16134578 16135552 -132647920 - L1MC4 LINE L1 -473 7569 6496 245 29 29 0 chr11 16135552 16135586 -132647886 + (TA)n Simple_repeat Simple_repeat 1 35 0 231 215 101 25 chr11 16135636 16135715 -132647757 - L1MC4 LINE L1 -1340 6702 6618 2288 64 4 0 chr11 16136190 16136503 -132646969 + AluY SINE Alu 1 314 0 471 339 32 29 chr11 16136852 16137200 -132646272 + L1PA15 LINE L1 2 350 -7231 8252 226 18 25 chr11 16138155 16140871 -132642601 + L1PA15 LINE L1 2319 5036 -2548 2756 192 3 37 chr11 16140866 16141491 -132641981 + L1PA15 LINE L1 5767 6370 -1214 * 1398 164 50 47 chr11 16141493 16141667 -132641805 - THE1B LTR MaLR 0 364 192 3306 91 4 0 chr11 16141667 16142119 -132641353 + L1PA6 LINE L1 5686 6139 -15 1398 164 50 47 chr11 16142119 16142366 -132641106 - THE1B LTR MaLR -172 192 1 5220 149 24 12 chr11 16142366 16142833 -132640639 + L1PA15 LINE L1 6368 6828 -775 2265 108 118 40 chr11 16142833 16143053 -132640419 - MSTA LTR MaLR 0 428 227 2878 9 0 0 chr11 16143053 16143371 -132640101 - AluYb8 SINE Alu 0 318 1 2265 108 118 40 chr11 16143371 16143547 -132639925 - MSTA LTR MaLR -201 227 1 5220 149 24 12 chr11 16143547 16144255 -132639217 + L1PA15 LINE L1 6828 7560 -43 906 271 114 36 chr11 16144845 16145347 -132638125 - L2 LINE L2 0 3313 2762 23 54 0 0 chr11 16145841 16145878 -132637594 + AT_rich Low_complexity Low_complexity 1 37 0 6159 207 23 75 chr11 16146066 16146451 -132637021 - L1MB4 LINE L1 0 6180 5776 399 89 0 0 chr11 16146451 16146507 -132636965 + (TA)n Simple_repeat Simple_repeat 1 56 0 6159 207 23 75 chr11 16146507 16148320 -132635152 - L1MB4 LINE L1 -404 5776 4047 910 200 0 0 chr11 16148320 16148465 -132635007 - FRAM SINE Alu -31 145 1 6159 207 23 75 chr11 16148465 16149123 -132634349 - L1MB4 LINE L1 -2133 4047 3356 219 69 0 0 chr11 16149216 16149245 -132634227 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr11 16149269 16149298 -132634174 + (TG)n Simple_repeat Simple_repeat 2 30 0 351 297 33 82 chr11 16149301 16149483 -132633989 - MIR SINE MIR -70 192 20 33 25 0 0 chr11 16149868 16149908 -132633564 + AT_rich Low_complexity Low_complexity 1 40 0 7109 162 12 6 chr11 16149917 16152193 -132631279 - L1PB1 LINE L1 -61 6090 3805 250 235 10 51 chr11 16153803 16153901 -132629571 + CT-rich Low_complexity Low_complexity 3 96 0 180 358 28 64 chr11 16155531 16155640 -132627832 - L2 LINE L2 -6 3266 3162 21 57 0 0 chr11 16155713 16155748 -132627724 + AT_rich Low_complexity Low_complexity 1 35 0 285 379 75 0 chr11 16158239 16158400 -132625072 - MIR SINE MIR -68 194 22 216 0 0 0 chr11 16160988 16161012 -132622460 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 257 265 99 43 chr11 16162708 16162870 -132620602 + MIR SINE MIR 34 204 -58 338 245 10 61 chr11 16162987 16163085 -132620387 + L2 LINE L2 3181 3273 -40 2691 126 11 26 chr11 16165219 16165672 -132617800 + L1MC1 LINE L1 5888 6333 0 228 229 16 33 chr11 16165703 16165764 -132617708 - L2 LINE L2 0 3313 3254 541 208 0 0 chr11 16165834 16165940 -132617532 + MER20 DNA MER1_type 113 218 -1 296 245 51 20 chr11 16165951 16166049 -132617423 - L2 LINE L2 -62 3251 3151 207 204 0 0 chr11 16166529 16166573 -132616899 + (TA)n Simple_repeat Simple_repeat 1 44 0 276 306 0 0 chr11 16166638 16166723 -132616749 - MIR SINE MIR -104 158 74 651 232 74 36 chr11 16168922 16169147 -132614325 + MIR SINE MIR 28 251 -11 284 264 0 28 chr11 16169184 16169256 -132614216 - L2 LINE L2 0 3313 3244 208 175 0 25 chr11 16169360 16169400 -132614072 + (TATG)n Simple_repeat Simple_repeat 2 40 0 181 222 0 44 chr11 16169634 16169679 -132613793 - MIR3 SINE MIR -2 206 164 * 197 200 0 0 chr11 16169645 16169680 -132613792 - L3b LINE CR1 -7 1576 1542 * 412 263 165 17 chr11 16169673 16169862 -132613610 + MIR SINE MIR 40 252 -10 * 421 284 24 47 chr11 16169811 16169938 -132613534 - MIR3 SINE MIR -15 193 70 535 340 82 58 chr11 16170280 16170776 -132612696 - L2 LINE L2 -4 3268 2776 21 0 0 0 chr11 16172481 16172502 -132610970 + AT_rich Low_complexity Low_complexity 1 21 0 1060 184 20 30 chr11 16172502 16172703 -132610769 - AluJo SINE Alu -20 292 94 732 192 29 24 chr11 16173078 16173255 -132610217 - MIR SINE MIR -16 246 68 213 231 0 0 chr11 16173299 16173351 -132610121 + T-rich Low_complexity Low_complexity 1 52 0 700 130 55 20 chr11 16173356 16173502 -132609970 - L1MA7 LINE L1 -1 6290 6140 287 25 0 0 chr11 16173502 16173542 -132609930 - L1PA2 LINE L1 -4 6151 6112 998 184 18 0 chr11 16174035 16174203 -132609269 + AluSq SINE Alu 128 298 -15 41831 57 4 0 chr11 16174465 16180587 -132602885 + L1PA5 LINE L1 11 6153 -1 287 53 0 0 chr11 16185936 16185974 -132597498 - AluSx SINE Alu -6 296 259 1308 104 19 66 chr11 16185974 16186040 -132597432 - AluSx SINE Alu -110 202 134 2115 132 0 0 chr11 16186040 16186335 -132597137 - AluSc SINE Alu -12 297 3 1308 104 19 66 chr11 16186335 16186480 -132596992 - AluSx SINE Alu -178 134 1 1127 244 37 0 chr11 16188402 16188644 -132594828 + MIR SINE MIR 2 252 -10 375 269 211 6 chr11 16188654 16188810 -132594662 + MIR SINE MIR 49 236 -26 464 297 21 0 chr11 16189209 16189354 -132594118 + MIR3 SINE MIR 46 193 -15 387 328 162 35 chr11 16189474 16189764 -132593708 + L2 LINE L2 2062 2388 -926 796 251 176 23 chr11 16189774 16190165 -132593307 + L2 LINE L2 2805 3255 -58 240 362 23 23 chr11 16190296 16190470 -132593002 + L2 LINE L2 2489 2662 -652 189 329 131 44 chr11 16190514 16190651 -132592821 + L2 LINE L2 2234 2382 -932 533 340 105 40 chr11 16190739 16191284 -132592188 + L2 LINE L2 2669 3251 -21 308 333 99 0 chr11 16191982 16192038 -132591434 - MIR SINE MIR -55 207 158 327 65 0 0 chr11 16192038 16192084 -132591388 + (TG)n Simple_repeat Simple_repeat 2 47 0 308 333 99 0 chr11 16192084 16192168 -132591304 - MIR SINE MIR -104 158 53 598 338 130 25 chr11 16193250 16193650 -132589822 - LTR16A LTR ERVL 0 450 9 807 188 82 77 chr11 16194201 16194409 -132589063 + MER63A DNA MER1_type 1 209 -1 310 214 11 11 chr11 16194488 16194577 -132588895 + (TA)n Simple_repeat Simple_repeat 2 90 0 2237 142 89 2 chr11 16195532 16195926 -132587546 + MSTA LTR MaLR 1 428 0 205 333 0 29 chr11 16195928 16195997 -132587475 + MIR3 SINE MIR 90 156 -52 278 273 23 40 chr11 16196084 16196260 -132587212 + GA-rich Low_complexity Low_complexity 2 174 0 432 176 42 129 chr11 16196294 16196487 -132586985 - MER112 DNA MER1_type -84 176 1 190 0 0 0 chr11 16197155 16197176 -132586296 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1373 185 75 8 chr11 16197176 16197441 -132586031 - AluJo SINE Alu -29 283 1 2131 97 13 10 chr11 16197714 16198023 -132585449 + AluSg SINE Alu 1 310 0 259 314 57 0 chr11 16198469 16198539 -132584933 + L2 LINE L2 3139 3212 -60 2364 91 0 0 chr11 16198788 16199085 -132584387 + AluSx SINE Alu 1 297 -15 284 238 50 12 chr11 16199105 16199185 -132584287 + MIR SINE MIR 180 262 0 241 363 116 14 chr11 16199667 16199813 -132583659 - L2 LINE L2 -27 3286 3126 1539 274 114 60 chr11 16200151 16201186 -132582286 + L2 LINE L2 2204 3308 -5 26 30 0 0 chr11 16204699 16204732 -132578740 + AT_rich Low_complexity Low_complexity 1 33 0 374 312 74 32 chr11 16205855 16206044 -132577428 - MIR3 SINE MIR -6 202 6 32 43 0 0 chr11 16206982 16207028 -132576444 + AT_rich Low_complexity Low_complexity 1 46 0 935 163 33 0 chr11 16207037 16207190 -132576282 - FRAM SINE Alu -26 150 1 284 259 141 0 chr11 16208526 16208611 -132574861 - MIR SINE MIR -102 160 64 531 82 0 0 chr11 16209211 16209284 -132574188 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 201 39 0 0 chr11 16209283 16209309 -132574163 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 599 266 53 6 chr11 16209376 16209545 -132573927 + MER5B DNA MER1_type 1 177 -1 696 256 164 30 chr11 16210402 16210646 -132572826 + MER113 DNA MER1_type? 31 241 -280 369 43 0 0 chr11 16210646 16210693 -132572779 + (TC)n Simple_repeat Simple_repeat 2 48 0 696 256 164 30 chr11 16210693 16210851 -132572621 + MER113 DNA MER1_type? 241 487 -34 22 35 0 0 chr11 16213656 16213685 -132569787 + AT_rich Low_complexity Low_complexity 1 29 0 521 319 88 0 chr11 16214111 16214315 -132569157 + MIR SINE MIR 31 252 -10 825 217 38 19 chr11 16214797 16215009 -132568463 + MER20 DNA MER1_type 4 219 0 22 35 0 0 chr11 16215790 16215819 -132567653 + AT_rich Low_complexity Low_complexity 1 29 0 231 389 160 0 chr11 16217782 16217926 -132565546 + L2 LINE L2 3106 3272 0 415 230 40 32 chr11 16220689 16220815 -132562657 + MER94 DNA DNA 5 131 -3 227 267 89 22 chr11 16220854 16220944 -132562528 - MIR3 SINE MIR -24 184 89 186 43 0 0 chr11 16221135 16221158 -132562314 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 232 261 62 0 chr11 16221802 16221867 -132561605 + L2 LINE L2 3235 3303 -10 269 383 30 18 chr11 16222838 16223005 -132560467 + L3b LINE CR1 1269 1437 -146 388 368 0 30 chr11 16223122 16223255 -132560217 - L2 LINE L2 -5 3267 3139 1961 149 3 0 chr11 16223255 16223557 -132559915 + AluSx SINE Alu 1 303 -9 396 376 82 46 chr11 16223838 16223879 -132559593 - L2 LINE L2 -342 2972 2934 273 57 0 0 chr11 16223879 16223914 -132559558 + (TG)n Simple_repeat Simple_repeat 2 36 0 396 376 82 46 chr11 16223914 16224175 -132559297 - L2 LINE L2 -380 2934 2659 21 0 0 0 chr11 16224870 16224891 -132558581 + AT_rich Low_complexity Low_complexity 1 21 0 994 154 0 0 chr11 16224917 16225073 -132558399 - MER2 DNA MER2_type -135 210 55 1599 161 20 26 chr11 16225646 16225950 -132557522 + AluJo SINE Alu 1 302 -10 288 77 0 0 chr11 16226316 16226355 -132557117 + (T)n Simple_repeat Simple_repeat 1 39 0 27 49 0 0 chr11 16227214 16227255 -132556217 + AT_rich Low_complexity Low_complexity 1 41 0 871 224 0 0 chr11 16227692 16227866 -132555606 + FRAM SINE Alu 1 167 -9 282 277 129 0 chr11 16229658 16229798 -132553674 - MIR SINE MIR -64 144 26 217 393 35 14 chr11 16230023 16230168 -132553304 - MIR3 SINE MIR -41 167 20 864 259 53 0 chr11 16230579 16230822 -132552650 - MIR SINE MIR 0 262 7 2274 107 0 0 chr11 16231295 16231603 -132551869 - AluSx SINE Alu 0 312 5 1734 88 0 80 chr11 16232499 16232816 -132550656 - AluSq SINE Alu 0 328 34 259 280 15 76 chr11 16233866 16233998 -132549474 - MIR SINE MIR -134 128 5 216 232 29 58 chr11 16235225 16235294 -132548178 + L2 LINE L2 3230 3296 -17 2105 104 3 36 chr11 16235297 16235605 -132547867 + AluSx SINE Alu 1 298 -14 467 235 26 17 chr11 16235637 16235752 -132547720 + MER94 DNA DNA 10 125 -9 225 151 38 0 chr11 16235957 16236010 -132547462 + (TA)n Simple_repeat Simple_repeat 1 55 0 2816 10 0 0 chr11 16236096 16236406 -132547066 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr11 16236427 16236468 -132547004 + AT_rich Low_complexity Low_complexity 1 41 0 690 124 16 0 chr11 16238480 16238601 -132544871 + L1MA8 LINE L1 6169 6291 0 620 280 42 26 chr11 16239221 16239410 -132544062 - MIR3 SINE MIR -1 207 16 484 294 150 0 chr11 16240249 16240402 -132543070 + MIR3 SINE MIR 8 183 -25 691 256 135 9 chr11 16240932 16241162 -132542310 + MIR SINE MIR 3 261 -1 226 287 90 25 chr11 16241355 16241477 -132541995 + L2 LINE L2 2715 2844 -470 235 280 11 11 chr11 16241669 16241762 -132541710 + L1ME LINE L1 5717 5809 -353 2323 67 27 0 chr11 16241794 16242094 -132541378 + AluY SINE Alu 1 308 -3 329 296 112 0 chr11 16242094 16242192 -132541280 - L2 LINE L2 -1 3312 3204 29 28 0 0 chr11 16242247 16242283 -132541189 + AT_rich Low_complexity Low_complexity 1 36 0 829 183 0 0 chr11 16242811 16242953 -132540519 + Charlie1a DNA MER1_type 72 213 -1242 2389 184 108 19 chr11 16242971 16243812 -132539660 + Charlie1a DNA MER1_type 461 1455 0 1674 169 10 3 chr11 16243947 16244242 -132539230 + AluSx SINE Alu 1 297 -15 328 351 15 22 chr11 16244315 16244449 -132539023 + MIR SINE MIR 48 180 -82 3265 137 21 14 chr11 16244476 16245044 -132538428 + L1MB8 LINE L1 5505 6076 -102 1124 314 66 35 chr11 16245246 16245894 -132537578 - L2 LINE L2 -72 3241 2570 550 289 47 33 chr11 16245894 16246105 -132537367 - LTR33 LTR ERVL -30 491 278 525 327 96 19 chr11 16246131 16246339 -132537133 - LTR33 LTR ERVL -297 224 1 562 271 90 12 chr11 16246341 16246507 -132536965 - L2 LINE L2 -841 2473 2295 21 100 0 0 chr11 16246881 16246951 -132536521 + AT_rich Low_complexity Low_complexity 1 70 0 624 265 176 43 chr11 16246971 16247276 -132536196 - L1ME LINE L1 -367 5754 5413 845 227 30 5 chr11 16248479 16248682 -132534790 + MER3 DNA MER1_type 2 209 0 2248 106 0 0 chr11 16249221 16249522 -132533950 - AluSg SINE Alu -9 301 1 197 95 0 24 chr11 16250318 16250360 -132533112 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 521 342 78 8 chr11 16250434 16250677 -132532795 + MIR SINE MIR 3 262 0 209 298 0 0 chr11 16250778 16250835 -132532637 + L2 LINE L2 3255 3311 -2 226 261 14 29 chr11 16250844 16250913 -132532559 + L3 LINE CR1 1497 1564 -13 216 255 35 103 chr11 16255151 16255296 -132528176 - MIR SINE MIR -28 234 100 4767 185 98 38 chr11 16255536 16256736 -132526736 + Charlie1a DNA MER1_type 1 1271 -184 644 202 0 0 chr11 16256739 16256853 -132526619 - AluJo SINE Alu -64 248 135 731 179 0 15 chr11 16256854 16256988 -132526484 - AluJo SINE Alu -170 132 1 447 173 115 32 chr11 16256998 16257154 -132526318 + Charlie1a DNA MER1_type 1282 1450 -5 24 0 0 0 chr11 16257378 16257402 -132526070 + AT_rich Low_complexity Low_complexity 1 24 0 328 366 23 0 chr11 16259321 16259452 -132524020 + MIR3 SINE MIR 75 208 0 28 61 0 0 chr11 16259595 16259644 -132523828 + AT_rich Low_complexity Low_complexity 1 49 0 219 36 0 0 chr11 16260794 16260822 -132522650 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 326 335 77 0 chr11 16261465 16261620 -132521852 + MIR SINE MIR 47 213 -49 228 282 28 14 chr11 16261740 16261811 -132521661 - L3 LINE CR1 -23 1554 1483 180 39 0 0 chr11 16261871 16261897 -132521575 - L2 LINE L2 0 3313 3288 862 191 66 0 chr11 16261915 16262067 -132521405 - AluJb SINE Alu -19 293 132 201 146 24 49 chr11 16262067 16262108 -132521364 - L2 LINE L2 -11 3302 3263 297 331 52 64 chr11 16262270 16262390 -132521082 - L3 LINE CR1 -364 1213 1094 2221 110 0 0 chr11 16262390 16262689 -132520783 + AluSx SINE Alu 1 299 -13 297 331 52 64 chr11 16262689 16262740 -132520732 - L3 LINE CR1 -483 1094 1044 23 78 0 0 chr11 16262766 16262817 -132520655 + AT_rich Low_complexity Low_complexity 1 51 0 1509 199 10 3 chr11 16262959 16263265 -132520207 + L1MA9 LINE L1 5967 6274 -38 21 71 0 0 chr11 16263445 16263487 -132519985 + AT_rich Low_complexity Low_complexity 1 42 0 508 276 115 56 chr11 16263702 16264112 -132519360 + L1ME4a LINE L1 2924 3357 -2789 359 265 103 47 chr11 16264876 16265110 -132518362 + L1ME4a LINE L1 4279 4525 -1621 252 352 51 21 chr11 16265246 16265578 -132517894 + L1ME4a LINE L1 4717 5058 -1088 825 290 109 39 chr11 16265725 16266529 -132516943 + L1ME4a LINE L1 5258 6118 -3 706 206 60 112 chr11 16268049 16268201 -132515271 - MIR SINE MIR 0 262 128 2200 114 3 0 chr11 16268201 16268509 -132514963 + AluSc SINE Alu 1 309 0 706 206 60 112 chr11 16268509 16268623 -132514849 - MIR SINE MIR -134 128 10 23 33 0 0 chr11 16269166 16269196 -132514276 + AT_rich Low_complexity Low_complexity 1 30 0 195 100 0 0 chr11 16270565 16270595 -132512877 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 25 51 0 0 chr11 16272189 16272228 -132511244 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr11 16272597 16272625 -132510847 + AT_rich Low_complexity Low_complexity 1 28 0 207 100 0 0 chr11 16273769 16273799 -132509673 + (TC)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 16274745 16274786 -132508686 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 295 50 36 chr11 16275206 16275345 -132508127 - MIR3 SINE MIR -19 189 49 390 248 110 97 chr11 16276175 16276485 -132506987 + MLT1K LTR MaLR 263 576 -12 1851 163 77 6 chr11 16276613 16276938 -132506534 + MER7A DNA MER2_type 1 346 0 231 224 35 94 chr11 16277624 16277709 -132505763 - MIR SINE MIR -3 259 180 190 281 67 79 chr11 16277817 16277906 -132505566 + L2 LINE L2 3158 3245 -27 2867 224 42 33 chr11 16277989 16278783 -132504689 - L1ME2 LINE L1 -9 6224 5424 2098 268 36 8 chr11 16278806 16279217 -132504255 - L1ME2 LINE L1 -890 5325 4886 237 83 0 0 chr11 16279217 16279253 -132504219 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 268 36 8 chr11 16279253 16279512 -132503960 - L1ME2 LINE L1 -1329 4886 4636 2988 231 74 20 chr11 16279523 16281195 -132502277 - L1ME2 LINE L1 -3116 3099 1370 26 30 0 0 chr11 16281204 16281237 -132502235 + AT_rich Low_complexity Low_complexity 1 33 0 3106 173 28 16 chr11 16281237 16281879 -132501593 - L1MA3 LINE L1 0 6305 5656 2320 112 38 16 chr11 16281879 16282246 -132501226 - THE1C LTR MaLR 0 375 1 10418 111 28 12 chr11 16282246 16283285 -132500187 - THE1C-int LTR MaLR 0 1580 508 2085 116 13 19 chr11 16283285 16283595 -132499877 + AluSc SINE Alu 1 308 -1 10418 111 28 12 chr11 16283595 16284110 -132499362 - THE1C-int LTR MaLR -1072 508 2 548 325 22 4 chr11 16284170 16284398 -132499074 - L1ME2 LINE L1 -6145 251 20 246 150 0 0 chr11 16284529 16284569 -132498903 + Charlie3 DNA MER1_type 1 40 -2670 227 207 46 81 chr11 16284564 16284651 -132498821 - Charlie3 DNA MER1_type -2394 316 233 * 739 189 0 0 chr11 16284580 16284702 -132498770 + Charlie3 DNA MER1_type 134 255 -2455 3039 263 149 17 chr11 16284806 16286642 -132496830 + L1ME3 LINE L1 2187 4238 -1977 * 11045 195 61 28 chr11 16286637 16287535 -132495937 + L1MC1 LINE L1 4 871 -5742 2155 114 0 3 chr11 16287535 16287833 -132495639 + AluSp SINE Alu 1 297 -16 11045 195 61 28 chr11 16287833 16291183 -132492289 + L1MC1 LINE L1 871 4528 -2085 203 0 37 0 chr11 16291183 16291210 -132492262 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 11045 195 61 28 chr11 16291210 16293290 -132490182 + L1MC1 LINE L1 4528 6538 -75 419 224 9 0 chr11 16293292 16293399 -132490073 + (TA)n Simple_repeat Simple_repeat 2 109 0 389 146 37 0 chr11 16293400 16293482 -132489990 + L1MC2 LINE L1 6260 6344 0 996 238 110 23 chr11 16293485 16294158 -132489314 + L1ME3 LINE L1 4248 5990 -243 850 217 16 68 chr11 16294258 16294507 -132488965 + L1ME3 LINE L1 5989 6224 -7 261 0 0 0 chr11 16294517 16294546 -132488926 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 189 0 0 chr11 16294546 16294583 -132488889 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 2156 87 7 3 chr11 16294583 16294869 -132488603 - AluY SINE Alu -22 289 3 618 320 43 68 chr11 16295340 16295850 -132487622 + L2 LINE L2 2756 3271 -1 220 239 0 0 chr11 16297712 16297722 -132485750 + (TAA)n Simple_repeat Simple_repeat 3 12 -36 21 0 0 0 chr11 16297722 16297743 -132485729 + AT_rich Low_complexity Low_complexity 1 21 0 220 239 0 0 chr11 16297743 16297758 -132485714 + (TAA)n Simple_repeat Simple_repeat 11 48 0 378 245 49 0 chr11 16298331 16298433 -132485039 - L1MC4 LINE L1 -14 8028 7922 2701 255 72 20 chr11 16298457 16299374 -132484098 - L1MC4a LINE L1 -1432 6376 5412 5512 229 47 23 chr11 16299385 16302894 -132480578 + L1MA7 LINE L1 44 6349 -11 773 200 27 85 chr11 16302967 16303227 -132480245 + L1MB4 LINE L1 2329 2573 -3573 1183 292 65 56 chr11 16303252 16304615 -132478857 - L1MC4a LINE L1 -751 5395 4020 4284 178 35 20 chr11 16304660 16305210 -132478262 + L1MB4 LINE L1 5239 5808 -372 246 32 0 0 chr11 16305210 16305241 -132478231 + (CA)n Simple_repeat Simple_repeat 2 32 0 4284 178 35 20 chr11 16305241 16305619 -132477853 + L1MB4 LINE L1 5808 6179 -1 461 304 68 32 chr11 16305643 16306629 -132476843 - L1MC4a LINE L1 -2182 3964 2933 1983 243 58 64 chr11 16308226 16309074 -132474398 + HAL1b LINE L1 469 1311 -37 231 267 23 23 chr11 16309595 16309681 -132473791 + L1MC5 LINE L1 7832 7917 -44 1815 75 0 56 chr11 16309769 16310036 -132473436 + AluY SINE Alu 39 290 -21 216 0 0 0 chr11 16310039 16310063 -132473409 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 311 352 9 0 chr11 16310616 16310721 -132472751 - MIR SINE MIR -125 137 32 232 258 0 48 chr11 16310970 16311032 -132472440 + LTR67 LTR ERVL 99 157 -400 * 319 256 30 58 chr11 16310987 16311091 -132472381 + MLT1L LTR MaLR 111 276 -310 237 262 63 19 chr11 16311252 16311366 -132472106 + MLT1J LTR MaLR 384 584 -31 214 315 68 14 chr11 16311481 16311554 -132471918 + MIR SINE MIR 172 248 -14 1604 191 16 55 chr11 16311695 16312078 -132471394 + MLT1A2 LTR MaLR 1 368 -6 564 317 122 5 chr11 16312373 16312594 -132470878 + MIR SINE MIR 5 251 -11 228 122 0 0 chr11 16316539 16316580 -132466892 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr11 16316809 16316848 -132466624 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr11 16317230 16317270 -132466202 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 16317398 16317419 -132466053 + AT_rich Low_complexity Low_complexity 1 21 0 479 84 42 0 chr11 16317592 16317687 -132465785 + (TA)n Simple_repeat Simple_repeat 1 99 0 32 43 0 0 chr11 16317878 16317924 -132465548 + AT_rich Low_complexity Low_complexity 1 46 0 517 320 13 7 chr11 16319098 16319248 -132464224 - L2 LINE L2 0 3272 3122 21 0 0 0 chr11 16319581 16319602 -132463870 + AT_rich Low_complexity Low_complexity 1 21 0 2095 109 0 3 chr11 16319826 16320110 -132463362 + AluSp SINE Alu 4 286 -27 27 62 0 0 chr11 16320114 16320162 -132463310 + AT_rich Low_complexity Low_complexity 1 48 0 278 281 16 0 chr11 16320183 16320247 -132463225 + L2 LINE L2 3208 3272 0 369 204 0 34 chr11 16321452 16321540 -132461932 + L1MC5 LINE L1 7831 7915 -46 440 18 18 0 chr11 16321815 16321872 -132461600 + (TC)n Simple_repeat Simple_repeat 1 58 0 279 0 0 0 chr11 16321871 16321902 -132461570 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 438 36 0 0 chr11 16325794 16325850 -132457622 + (TA)n Simple_repeat Simple_repeat 1 56 0 378 235 0 0 chr11 16325928 16326030 -132457442 + (TGAA)n Simple_repeat Simple_repeat 3 104 0 22 80 0 0 chr11 16331582 16331632 -132451840 + AT_rich Low_complexity Low_complexity 1 50 0 854 201 69 0 chr11 16335985 16336159 -132447313 - MER5A DNA MER1_type -3 186 1 455 338 187 19 chr11 16336403 16337060 -132446412 + L2 LINE L2 2260 3029 -243 2057 132 3 0 chr11 16337130 16337441 -132446031 - AluSx SINE Alu 0 312 1 909 266 22 62 chr11 16337693 16337912 -132445560 - L1M4 LINE L1 -1554 4592 4366 2029 130 3 3 chr11 16337912 16338227 -132445245 - AluSx SINE Alu 0 315 1 909 266 22 62 chr11 16338227 16338261 -132445211 - L1M4 LINE L1 -1780 4366 4332 1677 178 24 68 chr11 16338261 16338643 -132444829 + MLT1A1 LTR MaLR 1 365 0 909 266 22 62 chr11 16338643 16338739 -132444733 - L1M4 LINE L1 -1814 4332 4256 192 77 0 0 chr11 16338739 16338765 -132444707 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 909 266 22 62 chr11 16338765 16338814 -132444658 - L1M4 LINE L1 -1890 4256 4207 * 4686 209 24 38 chr11 16338810 16340324 -132443148 + L1MD2 LINE L1 4872 6358 -1 2266 110 0 3 chr11 16340625 16340935 -132442537 - AluSc SINE Alu 0 309 1 250 398 24 0 chr11 16342380 16342503 -132440969 - MIR3 SINE MIR -37 171 46 610 257 75 50 chr11 16343161 16343480 -132439992 + L1ME3A LINE L1 5627 5953 -217 240 235 0 0 chr11 16345280 16345331 -132438141 + (TAA)n Simple_repeat Simple_repeat 2 52 0 548 244 55 0 chr11 16345346 16345473 -132437999 - MIR SINE MIR -57 205 72 771 276 45 12 chr11 16345483 16345726 -132437746 - MIR SINE MIR -11 251 1 201 264 0 0 chr11 16346967 16347020 -132436452 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 338 350 90 52 chr11 16347698 16348221 -132435251 + L2 LINE L2 2306 2848 -466 241 346 69 8 chr11 16348273 16348403 -132435069 + L2 LINE L2 2933 3070 -202 1633 200 67 24 chr11 16348622 16348944 -132434528 + Charlie4a DNA MER1_type 24 331 -1630 199 0 0 0 chr11 16348944 16348966 -132434506 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1892 102 64 4 chr11 16348966 16349230 -132434242 - AluSc SINE Alu -1 301 1 1633 200 67 24 chr11 16349230 16349371 -132434101 + Charlie4a DNA MER1_type 330 508 0 1699 338 40 28 chr11 16349546 16350360 -132433112 - L3 LINE CR1 -78 1499 676 28 29 0 0 chr11 16350378 16350413 -132433059 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr11 16351245 16351287 -132432185 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 16352030 16352075 -132431397 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr11 16352770 16352799 -132430673 + AT_rich Low_complexity Low_complexity 1 29 0 3716 40 44 4 chr11 16353374 16353852 -132429620 - L1PA5 LINE L1 0 6154 5658 206 301 0 78 chr11 16354499 16354602 -132428870 + MIR SINE MIR 168 262 0 475 146 0 0 chr11 16354722 16354804 -132428668 + L1MB8 LINE L1 6088 6169 -9 200 267 67 0 chr11 16354837 16354897 -132428575 + L2 LINE L2 3200 3263 -9 2229 115 142 5 chr11 16356173 16356546 -132426926 + MSTA LTR MaLR 1 424 -4 308 274 143 24 chr11 16356636 16356804 -132426668 - MER5A DNA MER1_type -1 188 1 276 339 48 0 chr11 16357520 16357644 -132425828 + L2 LINE L2 2926 3055 -217 1606 195 3 10 chr11 16357914 16358227 -132425245 + AluJo SINE Alu 1 311 -1 330 339 6 12 chr11 16358383 16358551 -132424921 + L1ME4a LINE L1 5708 5874 -247 635 125 8 33 chr11 16358583 16358703 -132424769 - L1MA5 LINE L1 0 6300 6184 1671 159 79 3 chr11 16358704 16359019 -132424453 + L1MA4 LINE L1 5750 6088 -212 287 221 148 27 chr11 16359035 16359184 -132424288 + L1ME4a LINE L1 5955 6121 0 359 284 74 45 chr11 16359252 16359495 -132423977 + L1ME4a LINE L1 5870 6119 -2 680 318 70 37 chr11 16359681 16359744 -132423728 - L3 LINE CR1 -170 1407 1347 1506 135 69 101 chr11 16359744 16360121 -132423351 + MLT1A1 LTR MaLR 1 365 0 680 318 70 37 chr11 16360121 16360431 -132423041 - L3 LINE CR1 -230 1347 1022 854 276 71 77 chr11 16360693 16361225 -132422247 - MLT1F1 LTR MaLR 0 567 39 323 257 129 0 chr11 16361227 16361328 -132422144 + MIR SINE MIR 149 262 0 1379 248 13 6 chr11 16362048 16362362 -132421110 + MER90 LTR ERV1 297 612 -2 310 261 42 8 chr11 16362362 16362468 -132421004 + MER97b DNA MER1_type? 59 168 -885 880 266 23 53 chr11 16363498 16363761 -132419711 + MIR SINE MIR 6 260 -2 781 298 172 25 chr11 16363759 16364155 -132419317 - L3 LINE CR1 -82 1495 1042 * 2070 118 0 10 chr11 16364284 16364590 -132418882 + AluSx SINE Alu 1 303 -9 512 315 67 6 chr11 16364735 16364913 -132418559 - MIR3 SINE MIR -1 207 19 2311 105 0 0 chr11 16368446 16368741 -132414731 - AluSx SINE Alu -17 295 1 1066 294 113 36 chr11 16370385 16371165 -132412307 + L2 LINE L2 2457 3288 -25 189 74 0 0 chr11 16372363 16372390 -132411082 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 16372837 16372859 -132410613 + AT_rich Low_complexity Low_complexity 1 22 0 780 340 84 22 chr11 16373061 16373790 -132409682 + L2 LINE L2 2529 3312 -1 188 196 0 20 chr11 16382026 16382077 -132401395 + GA-rich Low_complexity Low_complexity 3 52 0 22 70 0 0 chr11 16382523 16382566 -132400906 + AT_rich Low_complexity Low_complexity 1 43 0 1983 148 7 0 chr11 16383349 16383654 -132399818 + AluSx SINE Alu 1 307 -5 1099 59 7 7 chr11 16383668 16383821 -132399651 + (GGAA)n Simple_repeat Simple_repeat 2 154 0 484 226 21 0 chr11 16384834 16384927 -132398545 + L2 LINE L2 3197 3291 -22 205 387 45 18 chr11 16385925 16386036 -132397436 + L2 LINE L2 3144 3257 -15 524 121 11 0 chr11 16386271 16386362 -132397110 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 678 269 15 92 chr11 16386386 16386646 -132396826 - MIR SINE MIR -4 258 19 23 54 0 0 chr11 16386667 16386704 -132396768 + AT_rich Low_complexity Low_complexity 1 37 0 403 299 116 6 chr11 16388156 16388320 -132395152 + MIR SINE MIR 71 252 -10 211 136 114 0 chr11 16392791 16392835 -132390637 + MIR SINE MIR 98 146 -62 408 347 89 79 chr11 16392951 16393506 -132389966 - L2 LINE L2 -1 3271 2709 726 252 60 17 chr11 16393859 16394093 -132389379 - MIR SINE MIR -16 246 3 464 369 95 0 chr11 16394104 16394283 -132389189 - MIR SINE MIR -12 250 55 186 306 83 28 chr11 16394336 16394444 -132389028 + L2 LINE L2 2937 3050 -222 207 271 83 52 chr11 16394642 16394738 -132388734 + L2 LINE L2 3168 3266 -6 2341 94 0 0 chr11 16394769 16395077 -132388395 + AluY SINE Alu 1 308 -3 661 255 21 37 chr11 16395138 16395326 -132388146 - MIR SINE MIR -73 189 5 218 318 129 41 chr11 16395966 16396136 -132387336 - MIR SINE MIR -15 247 63 428 211 128 9 chr11 16397052 16397161 -132386311 - L2 LINE L2 0 3313 3192 207 298 0 0 chr11 16397160 16397207 -132386265 + L3 LINE CR1 1520 1566 -11 * 223 227 182 30 chr11 16397260 16397326 -132386146 + L2 LINE L2 3196 3271 -1 1041 165 80 31 chr11 16397340 16397564 -132385908 + MER46A DNA MER2_type 2 236 0 548 320 23 6 chr11 16397858 16398030 -132385442 - MIR3 SINE MIR -31 177 3 456 236 37 47 chr11 16398505 16398670 -132384802 + MIR SINE MIR 2 172 -62 299 297 164 23 chr11 16398838 16398966 -132384506 + MIR SINE MIR 2 147 -115 1801 158 48 6 chr11 16399019 16399335 -132384137 + MER44D DNA MER2_type 11 609 0 336 127 0 0 chr11 16399335 16399390 -132384082 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr11 16399401 16399437 -132384035 + AT_rich Low_complexity Low_complexity 1 36 0 241 260 220 20 chr11 16400487 16400637 -132382835 - MIR SINE MIR -70 192 13 911 207 62 0 chr11 16401940 16402133 -132381339 - MER6B DNA MER2_type -4 206 2 1298 175 0 0 chr11 16402332 16402538 -132380934 + AluJb SINE Alu 82 287 -25 1527 184 85 14 chr11 16402560 16403005 -132380467 + L1ME4a LINE L1 4890 5366 -780 689 181 49 7 chr11 16403005 16403149 -132380323 + BC200 scRNA scRNA 1 150 -50 636 161 39 8 chr11 16403151 16403281 -132380191 + L1ME4a LINE L1 5361 5494 -690 522 316 125 8 chr11 16403282 16403538 -132379934 + L2 LINE L2 2970 3255 -58 575 264 119 34 chr11 16403773 16404337 -132379135 + LTR50 LTR ERVL 1 683 -112 2882 234 30 30 chr11 16404646 16405668 -132377804 + L2 LINE L2 2292 3308 -5 789 159 38 0 chr11 16405831 16405963 -132377509 - Tigger4(Zombi) DNA MER2_type -2594 137 1 247 257 0 14 chr11 16405963 16406033 -132377439 + MIR SINE MIR 194 262 0 871 140 0 7 chr11 16407854 16408004 -132375468 + (GGAA)n Simple_repeat Simple_repeat 1 149 0 413 257 0 80 chr11 16409387 16409500 -132373972 - MIR SINE MIR -69 139 36 3924 51 12 0 chr11 16409741 16410233 -132373239 + L1PA7 LINE L1 5649 6146 -8 286 216 20 49 chr11 16410906 16411008 -132372464 + GA-rich Low_complexity Low_complexity 4 102 0 662 266 61 5 chr11 16411969 16412183 -132371289 + L1ME4a LINE L1 5531 5756 -365 336 120 20 0 chr11 16412205 16412255 -132371217 - L2 LINE L2 -3 3269 3219 283 258 7 80 chr11 16412322 16412473 -132370999 + L1ME4a LINE L1 4564 4703 -1443 22 35 0 0 chr11 16412696 16412725 -132370747 + AT_rich Low_complexity Low_complexity 1 29 0 799 234 22 63 chr11 16412963 16413185 -132370287 - MIR SINE MIR -27 235 23 1257 261 77 31 chr11 16413191 16413235 -132370237 + L1ME4a LINE L1 5327 5368 -753 2186 114 3 0 chr11 16413235 16413534 -132369938 + AluSp SINE Alu 1 300 -13 1257 261 77 31 chr11 16413534 16414085 -132369387 + L1ME4a LINE L1 5368 5943 -178 351 264 169 20 chr11 16414266 16414520 -132368952 + L1ME4a LINE L1 5830 6121 0 269 313 38 0 chr11 16414971 16415051 -132368421 + MIR SINE MIR 57 139 -123 318 188 47 0 chr11 16416878 16416942 -132366530 - MIR SINE MIR -182 80 14 687 287 70 3 chr11 16417483 16417683 -132365789 + MIR SINE MIR 42 250 -12 213 304 78 26 chr11 16417698 16417813 -132365659 + MIR SINE MIR 136 256 -6 236 235 24 35 chr11 16418178 16418263 -132365209 + L1ME4a LINE L1 5985 6068 -53 220 336 47 62 chr11 16419136 16419265 -132364207 - MIR SINE MIR -96 112 35 353 362 104 26 chr11 16420408 16420963 -132362509 + L2 LINE L2 2681 3233 -39 628 222 40 45 chr11 16421161 16421337 -132362135 - MER5B DNA MER1_type 0 178 4 25 51 0 0 chr11 16421781 16421820 -132361652 + AT_rich Low_complexity Low_complexity 1 39 0 2795 244 95 5 chr11 16421944 16422818 -132360654 - L1M4 LINE L1 -1945 4201 3249 895 209 97 81 chr11 16422850 16423132 -132360340 - L1MDa LINE L1 -4821 1259 966 1606 174 10 23 chr11 16423132 16423436 -132360036 - AluJo SINE Alu -12 300 1 895 209 97 81 chr11 16423436 16423608 -132359864 - L1MDa LINE L1 -5114 966 798 1304 267 112 41 chr11 16423614 16423738 -132359734 - L1MDa LINE L1 -5408 662 548 2467 67 0 6 chr11 16423738 16424051 -132359421 + AluY SINE Alu 1 311 0 1304 267 112 41 chr11 16424051 16424491 -132358981 - L1MDa LINE L1 -5522 548 58 501 323 113 60 chr11 16424581 16424736 -132358736 + L2 LINE L2 2901 3046 -226 4998 77 6 0 chr11 16424736 16425400 -132358072 + L1PA7 LINE L1 5485 6152 -2 501 323 113 60 chr11 16425400 16425597 -132357875 + L2 LINE L2 3046 3272 0 283 279 184 0 chr11 16426003 16426139 -132357333 + L1MC4a LINE L1 5725 5885 -1923 301 200 0 0 chr11 16426359 16426414 -132357058 - L2 LINE L2 -2 3311 3257 493 352 68 8 chr11 16427041 16427291 -132356181 - L3 LINE CR1 -127 1450 1186 246 253 0 101 chr11 16428062 16428141 -132355331 + MIR SINE MIR 112 182 -80 700 337 97 31 chr11 16429195 16429720 -132353752 - L2 LINE L2 -11 3302 2748 225 203 241 13 chr11 16430235 16430314 -132353158 + MIR SINE MIR 166 262 0 202 194 0 0 chr11 16430444 16430480 -132352992 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr11 16431093 16431122 -132352350 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr11 16431275 16431310 -132352162 + AT_rich Low_complexity Low_complexity 1 35 0 212 342 13 13 chr11 16432102 16432181 -132351291 + MER5A DNA MER1_type 7 85 -104 199 203 0 119 chr11 16432181 16432240 -132351232 + MER5A DNA MER1_type 138 189 0 29 60 0 0 chr11 16432934 16432984 -132350488 + AT_rich Low_complexity Low_complexity 1 50 0 500 268 24 71 chr11 16433050 16433276 -132350196 + MIR SINE MIR 6 216 -46 293 45 0 23 chr11 16433384 16433428 -132350044 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 672 186 0 9 chr11 16433429 16433542 -132349930 - FRAM SINE Alu -30 146 35 844 277 39 32 chr11 16434118 16434428 -132349044 - L2 LINE L2 -7 3306 2995 370 202 172 17 chr11 16434536 16434718 -132348754 + L1ME4a LINE L1 5716 5935 -186 436 293 0 0 chr11 16434721 16434827 -132348645 - L2 LINE L2 -1 3312 3207 339 357 23 0 chr11 16435609 16435738 -132347734 + MIR3 SINE MIR 67 198 -10 190 0 32 32 chr11 16436163 16436194 -132347278 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 33 25 0 0 chr11 16437893 16437933 -132345539 + AT_rich Low_complexity Low_complexity 1 40 0 870 255 213 25 chr11 16440369 16440791 -132342681 - MLT1H LTR MaLR -25 521 32 3814 154 7 28 chr11 16441959 16442339 -132341133 - L1P LINE L1 -809 5337 4978 2795 3 0 0 chr11 16442339 16442643 -132340829 - AluYa5 SINE Alu -7 304 1 3814 154 7 28 chr11 16442643 16442984 -132340488 - L1P LINE L1 -1168 4978 4631 956 203 0 0 chr11 16442990 16443177 -132340295 - AluY SINE Alu 0 311 125 701 176 0 16 chr11 16443519 16443644 -132339828 - FLAM_A SINE Alu -10 132 10 435 254 117 19 chr11 16444289 16444545 -132338927 + L1M4 LINE L1 3632 3912 -2234 900 141 5 49 chr11 16444703 16444888 -132338584 + L1MA7 LINE L1 5877 6053 -238 462 148 67 104 chr11 16444889 16445024 -132338448 + L1MA7 LINE L1 6161 6290 -1 27 0 0 0 chr11 16445060 16445087 -132338385 + AT_rich Low_complexity Low_complexity 1 27 0 1851 171 0 7 chr11 16445287 16445592 -132337880 + AluJb SINE Alu 1 303 -9 183 80 0 0 chr11 16445797 16445822 -132337650 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 16447278 16447301 -132336171 + AT_rich Low_complexity Low_complexity 1 23 0 607 206 8 23 chr11 16447305 16447436 -132336036 + FLAM_A SINE Alu 1 129 -4 879 238 98 7 chr11 16447443 16447751 -132335721 - MLT1K LTR MaLR -48 540 176 2407 78 3 0 chr11 16448326 16448633 -132334839 - AluSq SINE Alu -5 308 1 231 294 105 49 chr11 16448861 16449004 -132334468 - L2 LINE L2 -3 3269 3119 2315 116 20 67 chr11 16450074 16450522 -132332950 + L1MA5 LINE L1 5870 6296 -4 324 157 0 0 chr11 16451521 16451572 -132331900 - L2 LINE L2 -2 3311 3261 23 0 0 0 chr11 16454337 16454360 -132329112 + AT_rich Low_complexity Low_complexity 1 23 0 436 271 83 38 chr11 16457426 16457559 -132325913 + MER91A DNA MER1_type 12 150 -46 1034 309 57 28 chr11 16457663 16458181 -132325291 + L2 LINE L2 2559 3088 -225 186 103 0 0 chr11 16458177 16458206 -132325266 + L2 LINE L2 3285 3313 0 * 357 319 0 11 chr11 16458251 16458345 -132325127 + L2 LINE L2 3221 3313 0 237 371 131 24 chr11 16458364 16459064 -132324408 - L2 LINE L2 -834 2480 1706 253 347 20 0 chr11 16459208 16459306 -132324166 - MIR SINE MIR -66 142 43 258 281 31 16 chr11 16460068 16460132 -132323340 + MIR SINE MIR 14 78 -184 * 514 208 42 0 chr11 16460125 16460221 -132323251 - L2 LINE L2 0 3313 3214 3108 170 7 12 chr11 16460221 16460786 -132322686 + L1PA13 LINE L1 4084 4645 -1501 1516 81 0 5 chr11 16460786 16460983 -132322489 + AluY SINE Alu 1 196 -115 7619 30 10 0 chr11 16461083 16462490 -132320982 - L1PA4 LINE L1 -296 5859 4441 5742 92 16 4 chr11 16462477 16463293 -132320179 + L1PA13 LINE L1 5336 6161 -2 * 487 252 69 8 chr11 16463371 16463502 -132319970 + MIR SINE MIR 64 202 -60 306 327 19 82 chr11 16463525 16463733 -132319739 + L2 LINE L2 2861 3055 -217 206 225 0 0 chr11 16463780 16463820 -132319652 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 955 230 148 89 chr11 16463820 16463867 -132319605 + L2 LINE L2 2584 2627 -686 1951 176 17 6 chr11 16463867 16464226 -132319246 + MLT1A1 LTR MaLR 3 365 0 955 230 148 89 chr11 16464226 16464841 -132318631 + L2 LINE L2 2627 3286 -27 23 33 0 0 chr11 16465914 16465944 -132317528 + AT_rich Low_complexity Low_complexity 1 30 0 402 258 62 16 chr11 16466069 16466197 -132317275 - MER5A DNA MER1_type 0 189 56 26 0 0 0 chr11 16467546 16467572 -132315900 + AT_rich Low_complexity Low_complexity 1 26 0 200 329 55 0 chr11 16467827 16467900 -132315572 - L2 LINE L2 -39 3274 3198 305 288 88 44 chr11 16468037 16468197 -132315275 + L2 LINE L2 3147 3313 0 22 35 0 0 chr11 16468307 16468336 -132315136 + AT_rich Low_complexity Low_complexity 1 29 0 1047 127 34 54 chr11 16468968 16469173 -132314299 + MLT1C LTR MaLR 267 467 0 195 323 121 46 chr11 16469276 16469576 -132313896 + L2 LINE L2 1635 1911 -1403 373 175 29 39 chr11 16469576 16469679 -132313793 + L1PA5 LINE L1 6052 6153 -1 195 323 121 46 chr11 16469679 16469982 -132313490 + L2 LINE L2 1911 2283 -1031 791 302 28 20 chr11 16469989 16470237 -132313235 + MIR SINE MIR 1 250 -12 1209 191 24 65 chr11 16470433 16470727 -132312745 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr11 16470727 16470749 -132312723 + AT_rich Low_complexity Low_complexity 1 22 0 313 316 123 9 chr11 16470851 16470965 -132312507 + L2 LINE L2 3145 3271 -1 339 224 26 0 chr11 16471111 16471187 -132312285 - MIR SINE MIR -6 256 179 * 692 276 14 19 chr11 16471165 16471379 -132312093 + MIR SINE MIR 49 261 -1 258 152 0 0 chr11 16471574 16471620 -132311852 + MER4B-int LTR ERV1 1146 1191 -5567 21 0 0 0 chr11 16471645 16471666 -132311806 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 16474717 16474754 -132308718 + AT_rich Low_complexity Low_complexity 1 37 0 33 43 0 0 chr11 16475983 16476030 -132307442 + AT_rich Low_complexity Low_complexity 1 47 0 210 399 63 18 chr11 16476436 16476659 -132306813 + L2 LINE L2 2838 3070 -202 191 222 0 0 chr11 16476810 16476855 -132306617 + L2 LINE L2 3228 3272 0 218 298 18 0 chr11 16476890 16476947 -132306525 - L2 LINE L2 -5 3267 3210 22 56 0 0 chr11 16476993 16477029 -132306443 + AT_rich Low_complexity Low_complexity 1 36 0 698 187 8 0 chr11 16477029 16477163 -132306309 - L1PA16 LINE L1 -4 6162 6028 2373 88 0 0 chr11 16477193 16477490 -132305982 + AluSc SINE Alu 3 299 -10 322 244 42 14 chr11 16479650 16479781 -132303691 + GA-rich Low_complexity Low_complexity 1 134 0 708 189 6 17 chr11 16480330 16480510 -132302962 + CT-rich Low_complexity Low_complexity 3 180 0 27 49 0 0 chr11 16480641 16480682 -132302790 + AT_rich Low_complexity Low_complexity 1 41 0 445 269 113 31 chr11 16480714 16480874 -132302598 + MIR SINE MIR 20 192 -70 318 169 0 0 chr11 16480883 16480948 -132302524 + CT-rich Low_complexity Low_complexity 2 66 0 212 143 0 0 chr11 16480971 16481006 -132302466 + (GA)n Simple_repeat Simple_repeat 2 36 0 1163 233 25 33 chr11 16482260 16482535 -132300937 + AluJo SINE Alu 10 282 -30 2516 55 0 0 chr11 16482782 16483093 -132300379 - AluY SINE Alu 0 311 1 21 0 0 0 chr11 16483101 16483122 -132300350 + AT_rich Low_complexity Low_complexity 1 21 0 1801 158 11 3 chr11 16484455 16484740 -132298732 + AluJb SINE Alu 3 289 -23 373 161 47 29 chr11 16485258 16485516 -132297956 + AluJo SINE Alu 1 314 0 21 36 0 0 chr11 16488601 16488629 -132294843 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 16488643 16488664 -132294808 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 16488775 16488801 -132294671 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr11 16488887 16488947 -132294525 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr11 16489664 16489687 -132293785 + AT_rich Low_complexity Low_complexity 1 23 0 237 300 285 15 chr11 16490998 16491198 -132292274 - MIR SINE MIR -6 256 3 249 108 0 0 chr11 16491511 16491548 -132291924 + (ATG)n Simple_repeat Simple_repeat 2 38 0 220 343 250 0 chr11 16491754 16491862 -132291610 - L2 LINE L2 -1 3271 3137 250 87 22 0 chr11 16491908 16491954 -132291518 + L1MA3 LINE L1 6259 6305 0 235 185 54 109 chr11 16492104 16492196 -132291276 - MIR SINE MIR 0 262 176 3856 270 53 38 chr11 16492202 16493778 -132289694 + L1MEc LINE L1 201 1800 -4763 279 325 0 32 chr11 16495456 16495579 -132287893 + L2 LINE L2 3191 3309 -4 621 285 30 53 chr11 16496982 16497245 -132286227 - L2 LINE L2 0 3313 3057 232 235 103 15 chr11 16497228 16497296 -132286176 + MIR SINE MIR 159 232 -30 * 207 216 27 0 chr11 16497269 16497306 -132286166 + L2 LINE L2 3210 3247 -25 * 263 192 82 14 chr11 16498170 16498243 -132285229 + GA-rich Low_complexity Low_complexity 3 80 0 21 82 0 0 chr11 16599476 16599525 -132183947 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr11 16600903 16600939 -132182533 + AT_rich Low_complexity Low_complexity 1 36 0 607 204 72 0 chr11 16601838 16601990 -132181482 + L1MEc LINE L1 2274 2436 -3948 1780 156 3 35 chr11 16602098 16602412 -132181060 + AluJo SINE Alu 1 304 -8 477 0 0 0 chr11 16602412 16602465 -132181007 + (TA)n Simple_repeat Simple_repeat 2 54 0 2142 89 0 4 chr11 16603329 16603633 -132179839 - AluSg SINE Alu 0 303 1 762 215 45 25 chr11 16603820 16604020 -132179452 + L1MB5 LINE L1 5963 6166 -8 208 247 68 68 chr11 16606895 16606968 -132176504 + L2 LINE L2 3237 3309 -4 351 312 145 51 chr11 16607287 16607521 -132175951 - MIR SINE MIR 0 262 7 209 360 54 27 chr11 16607530 16607641 -132175831 - L2 LINE L2 -16 3256 3143 198 372 54 16 chr11 16607948 16608077 -132175395 + L2 LINE L2 2640 2773 -541 180 304 231 23 chr11 16608378 16608724 -132174748 - L2 LINE L2 -924 2390 1973 2373 89 0 3 chr11 16609050 16609354 -132174118 - AluY SINE Alu -8 303 1 7714 95 11 2 chr11 16609359 16611261 -132172211 - L1PA7 LINE L1 0 6154 4235 35829 95 10 32 chr11 16611361 16612956 -132170516 - L1P LINE L1 -802 5344 3715 879 107 0 0 chr11 16612956 16613077 -132170395 - AluY SINE Alu -6 305 185 35829 95 10 32 chr11 16613077 16616815 -132166657 - L1P LINE L1 -2431 3715 12 293 191 0 0 chr11 16616823 16616870 -132166602 + MSTB LTR MaLR 380 426 0 2128 252 112 18 chr11 16616870 16617784 -132165688 + L1MEc LINE L1 3090 4089 -2293 5556 239 73 14 chr11 16617788 16618552 -132164920 + L1M4 LINE L1 2 719 -5823 183 42 0 0 chr11 16618552 16618576 -132164896 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5556 239 73 14 chr11 16618576 16619395 -132164077 + L1M4 LINE L1 719 1679 -4863 3669 59 2 6 chr11 16619506 16619982 -132163490 + L1PA6 LINE L1 5681 6154 0 1998 167 78 0 chr11 16620024 16620395 -132163077 - MSTA LTR MaLR -28 400 1 8342 166 50 31 chr11 16620395 16622015 -132161457 - MSTA-int LTR MaLR 0 1651 1 275 143 0 0 chr11 16622015 16622057 -132161415 - MSTB LTR MaLR 0 426 385 1189 184 16 98 chr11 16622062 16622378 -132161094 + AluJb SINE Alu 12 301 -11 1555 153 88 20 chr11 16622378 16622673 -132160799 - MSTB LTR MaLR -34 392 78 991 99 0 35 chr11 16622677 16622819 -132160653 - AluSq/x SINE Alu -175 137 1 3573 266 74 40 chr11 16622826 16622943 -132160529 - L1MEc LINE L1 -4602 1613 1501 700 195 0 0 chr11 16622943 16623066 -132160406 - FLAM_C SINE Alu -10 123 1 3573 266 74 40 chr11 16623066 16623217 -132160255 - L1MEc LINE L1 -4714 1501 1357 1765 164 32 4 chr11 16623217 16623497 -132159975 - AluJb SINE Alu -22 290 3 3573 266 74 40 chr11 16623497 16624803 -132158669 - L1MEc LINE L1 -4858 1357 38 1812 149 53 0 chr11 16625164 16625446 -132158026 - AluSx SINE Alu -15 297 1 426 263 213 0 chr11 16625940 16626100 -132157372 + MIR SINE MIR 69 262 0 1773 186 3 3 chr11 16626750 16627062 -132156410 + AluJo SINE Alu 1 312 0 336 48 0 0 chr11 16627282 16627324 -132156148 + (TG)n Simple_repeat Simple_repeat 1 42 0 1550 114 122 4 chr11 16627340 16627585 -132155887 - AluSg SINE Alu -36 274 1 271 284 87 0 chr11 16627990 16628117 -132155355 - L1ME4a LINE L1 -195 5926 5789 286 270 0 0 chr11 16628144 16628218 -132155254 - MER116 DNA Mariner -6 74 1 456 272 80 31 chr11 16628218 16628442 -132155030 - L1ME4a LINE L1 -352 5769 5535 1721 187 17 0 chr11 16629481 16629781 -132153691 + AluJo SINE Alu 1 305 -7 2136 152 6 3 chr11 16629998 16630341 -132153131 - MER2 DNA MER2_type 0 344 1 1570 158 9 80 chr11 16630943 16631279 -132152193 + AluSx SINE Alu 1 312 0 425 326 7 54 chr11 16631487 16631634 -132151838 + MIR3 SINE MIR 48 187 -21 207 281 0 62 chr11 16631655 16631690 -132151782 - L2 LINE L2 -4 3268 3237 14899 119 34 16 chr11 16631690 16632587 -132150885 - Tigger1 DNA MER2_type -1 2417 1538 1985 103 88 0 chr11 16632587 16632859 -132150613 + AluSx SINE Alu 1 296 -16 14899 119 34 16 chr11 16632859 16634335 -132149137 - Tigger1 DNA MER2_type -880 1538 1 207 281 0 62 chr11 16634335 16634363 -132149109 - L2 LINE L2 -35 3237 3209 438 299 120 32 chr11 16634384 16634601 -132148871 - MIR SINE MIR -12 250 15 280 256 145 51 chr11 16634653 16634770 -132148702 + MER5A DNA MER1_type 35 162 -27 408 320 89 63 chr11 16635168 16635731 -132147741 - L2 LINE L2 0 3313 2741 1211 264 115 30 chr11 16635733 16636202 -132147270 + LTR33 LTR ERVL 1 509 -12 394 299 140 5 chr11 16636474 16636688 -132146784 + MIR SINE MIR 5 247 -15 1866 54 29 121 chr11 16636871 16637184 -132146288 + AluYb8 SINE Alu 16 299 -19 216 200 0 0 chr11 16638173 16638238 -132145234 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr11 16638459 16638487 -132144985 + AT_rich Low_complexity Low_complexity 1 28 0 206 147 0 0 chr11 16639137 16639171 -132144301 + L2 LINE L2 3280 3313 0 247 259 214 18 chr11 16639718 16639830 -132143642 - MIR SINE MIR -12 250 117 * 258 311 0 0 chr11 16639828 16639889 -132143583 + L2 LINE L2 3211 3271 -1 2380 107 0 0 chr11 16640255 16640563 -132142909 + AluSx SINE Alu 1 308 -4 1766 195 0 7 chr11 16640624 16640921 -132142551 + AluJo SINE Alu 3 297 -15 841 232 21 14 chr11 16640922 16641202 -132142270 + L1M4c LINE L1 2017 2298 -4086 22 35 0 0 chr11 16641666 16641695 -132141777 + AT_rich Low_complexity Low_complexity 1 29 0 1986 179 81 0 chr11 16642293 16642467 -132141005 + MSTA LTR MaLR 1 160 -268 1928 159 0 0 chr11 16642467 16642762 -132140710 + AluSx SINE Alu 1 295 -17 1986 179 81 0 chr11 16642762 16642983 -132140489 + MSTA LTR MaLR 160 428 0 485 287 116 6 chr11 16643505 16643669 -132139803 - MIR SINE MIR -30 232 51 1838 306 64 40 chr11 16643674 16644475 -132138997 + L2 LINE L2 1912 2741 -573 1687 163 21 10 chr11 16644475 16644764 -132138708 + AluJb SINE Alu 1 292 -20 1838 306 64 40 chr11 16644764 16644931 -132138541 + L2 LINE L2 2741 2903 -411 5699 97 19 1 chr11 16644952 16645307 -132138165 - L1PB1 LINE L1 0 6151 5804 402 21 0 0 chr11 16645307 16645354 -132138118 + (CA)n Simple_repeat Simple_repeat 1 47 0 5699 97 19 1 chr11 16645354 16645809 -132137663 - L1PB1 LINE L1 -347 5804 5327 603 247 250 44 chr11 16645809 16646153 -132137319 + L2 LINE L2 2898 3312 -1 599 288 46 7 chr11 16646211 16646364 -132137108 - MIR3 SINE MIR -31 177 19 25 31 0 0 chr11 16646717 16646749 -132136723 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 16647335 16647358 -132136114 + AT_rich Low_complexity Low_complexity 1 23 0 2598 52 3 0 chr11 16647674 16647981 -132135491 - AluSc SINE Alu -1 308 1 1401 174 54 7 chr11 16648325 16648628 -132134844 + MER33 DNA MER1_type 1 302 -22 1856 162 0 13 chr11 16649183 16649485 -132133987 + AluSg SINE Alu 1 298 -12 720 188 0 15 chr11 16649496 16649629 -132133843 + FLAM_A SINE Alu 3 133 0 1728 216 173 17 chr11 16649756 16650298 -132133174 + L1ME3A LINE L1 5542 6168 -2 232 293 309 0 chr11 16650440 16650563 -132132909 - MIR3 SINE MIR -3 205 45 22 0 0 0 chr11 16651479 16651501 -132131971 + AT_rich Low_complexity Low_complexity 1 22 0 280 264 43 49 chr11 16651820 16651983 -132131489 + L1ME4a LINE L1 5942 6103 -18 794 142 0 57 chr11 16652081 16652222 -132131250 + AluJo SINE Alu 1 133 -169 303 152 42 89 chr11 16652297 16652445 -132131027 - LTR37A LTR ERV1 -2 424 299 1527 172 71 4 chr11 16652873 16653166 -132130306 + AluJo SINE Alu 1 311 0 895 45 0 0 chr11 16653231 16653342 -132130130 + L1P LINE L1 3770 3880 -2266 5247 19 0 0 chr11 16653342 16653938 -132129534 + L1PA3 LINE L1 5560 6155 0 2013 138 25 6 chr11 16654178 16654505 -132128967 + MER41-int LTR ERV1 1 333 -5613 3283 187 118 76 chr11 16654708 16656096 -132127376 - Looper DNA T2_type -64 1494 49 871 202 51 6 chr11 16656237 16656415 -132127057 + MER5A DNA MER1_type 1 186 -3 465 81 0 54 chr11 16657160 16657234 -132126238 + U3 snRNA snRNA 1 70 -147 2339 150 48 0 chr11 16657316 16657729 -132125743 - Tigger2a DNA MER2_type 0 434 2 357 344 122 43 chr11 16657965 16658244 -132125228 - L2 LINE L2 0 3272 2972 431 187 187 66 chr11 16658387 16658569 -132124903 + MER6B DNA MER2_type 4 207 -3 1473 105 76 0 chr11 16658759 16658969 -132124503 - AluSg1 SINE Alu -83 226 1 468 290 85 66 chr11 16659836 16660095 -132123377 + L2 LINE L2 3047 3310 -3 24 0 0 0 chr11 16660289 16660313 -132123159 + AT_rich Low_complexity Low_complexity 1 24 0 964 162 0 42 chr11 16660315 16660482 -132122990 + AluJo SINE Alu 137 296 -6 1712 153 24 30 chr11 16660496 16660791 -132122681 + AluSx SINE Alu 2 294 -18 18186 90 57 6 chr11 16661501 16663252 -132120220 + Charlie3 DNA MER1_type 1 1926 -780 1982 138 7 7 chr11 16663252 16663550 -132119922 + AluSx SINE Alu 1 298 -14 18186 90 57 6 chr11 16663550 16664373 -132119099 + Charlie3 DNA MER1_type 1926 2706 0 1702 124 95 4 chr11 16665129 16665403 -132118069 - AluSx SINE Alu -13 299 1 1882 129 20 7 chr11 16665403 16665697 -132117775 - AluSx SINE Alu -14 298 1 1363 139 180 4 chr11 16665783 16666028 -132117444 - AluJo SINE Alu -14 288 1 1176 160 0 11 chr11 16666365 16666546 -132116926 - AluJo SINE Alu -14 298 120 237 211 0 0 chr11 16666547 16666604 -132116868 + T-rich Low_complexity Low_complexity 1 57 0 765 156 0 57 chr11 16666604 16666745 -132116727 - FLAM_A SINE Alu 0 133 1 195 42 0 0 chr11 16666941 16666965 -132116507 + (ATG)n Simple_repeat Simple_repeat 2 25 0 13754 187 15 9 chr11 16667717 16672704 -132110768 + L1PB1 LINE L1 1789 6866 -1 227 97 0 0 chr11 16672751 16672782 -132110690 - U2 snRNA snRNA -153 35 5 223 195 0 69 chr11 16672802 16672889 -132110583 + (TATAA)n Simple_repeat Simple_repeat 1 81 0 1298 202 4 43 chr11 16673090 16673367 -132110105 - AluJb SINE Alu -18 294 29 693 214 0 0 chr11 16673396 16673513 -132109959 - AluJo SINE Alu -185 117 1 25 31 0 0 chr11 16673575 16673607 -132109865 + AT_rich Low_complexity Low_complexity 1 32 0 234 316 0 0 chr11 16673621 16673697 -132109775 - HAL1 LINE L1 -941 1566 1491 293 282 12 37 chr11 16674512 16674675 -132108797 - L1MEd LINE L1 -4905 1214 1056 1039 113 80 13 chr11 16674758 16674909 -132108563 + FRAM SINE Alu 1 161 -15 2197 108 3 0 chr11 16675011 16675299 -132108173 - AluSc SINE Alu -20 289 1 5252 137 42 41 chr11 16675720 16676788 -132106684 - L1MC2 LINE L1 -8 6336 5268 285 308 0 0 chr11 16676793 16676900 -132106572 - L1MB8 LINE L1 -281 5897 5791 760 259 40 39 chr11 16676986 16677351 -132106121 - L1MB8 LINE L1 -577 5589 5221 2516 51 0 0 chr11 16677351 16677645 -132105827 + AluY SINE Alu 1 294 -17 760 259 40 39 chr11 16677645 16677684 -132105788 - L1MB8 LINE L1 -945 5221 5184 2519 222 41 11 chr11 16677845 16678556 -132104916 - L1M4 LINE L1 -867 5348 4617 4371 262 71 12 chr11 16678559 16679516 -132103956 - L1MEc LINE L1 -2499 3716 2817 1856 163 36 11 chr11 16679516 16679872 -132103600 + MLT1A1 LTR MaLR 1 365 0 4371 262 71 12 chr11 16679872 16680470 -132103002 - L1MEc LINE L1 -3398 2817 2256 1508 210 0 7 chr11 16680470 16680746 -132102726 - AluJo SINE Alu -10 302 29 4371 262 71 12 chr11 16680746 16681392 -132102080 - L1MEc LINE L1 -3959 2256 1414 954 215 66 134 chr11 16681387 16681624 -132101848 + L1M4 LINE L1 3705 3957 -2189 * 1348 192 42 31 chr11 16681624 16681911 -132101561 - AluJo SINE Alu -18 294 5 954 215 66 134 chr11 16681911 16682248 -132101224 + L1M4 LINE L1 3957 4223 -1923 1723 181 27 0 chr11 16682248 16682540 -132100932 - AluJo SINE Alu -12 300 1 954 215 66 134 chr11 16682540 16682679 -132100793 + L1M4 LINE L1 4223 4370 -1776 21805 136 22 24 chr11 16682883 16682918 -132100554 + L1MB7 LINE L1 18 52 -7513 579 191 124 0 chr11 16682918 16683066 -132100406 + FLAM_C SINE Alu 1 161 0 21805 136 22 24 chr11 16683066 16685448 -132098024 + L1MB7 LINE L1 52 2437 -5128 1825 157 35 0 chr11 16685448 16685735 -132097737 + AluSx SINE Alu 1 297 -15 21805 136 22 24 chr11 16685735 16685881 -132097591 + L1MB7 LINE L1 2437 2582 -4983 1364 176 66 70 chr11 16685881 16686182 -132097290 + AluJb SINE Alu 3 302 -10 21805 136 22 24 chr11 16686182 16686901 -132096571 + L1MB7 LINE L1 2582 3301 -4264 180 111 0 0 chr11 16686901 16686928 -132096544 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21805 136 22 24 chr11 16686928 16687022 -132096450 + L1MB7 LINE L1 3301 3394 -4171 1873 128 14 4 chr11 16687022 16687303 -132096169 + AluSx SINE Alu 7 290 -22 21805 136 22 24 chr11 16687303 16688258 -132095214 + L1MB7 LINE L1 3394 4348 -3217 421 164 0 0 chr11 16688258 16688331 -132095141 + L1PA12 LINE L1 159 231 -7350 8857 219 121 46 chr11 16688333 16691300 -132092172 + L1PA12 LINE L1 694 3436 -4148 2071 149 28 22 chr11 16691300 16691662 -132091810 - THE1B LTR MaLR 0 364 1 8857 219 121 46 chr11 16691662 16691917 -132091555 + L1PA12 LINE L1 3436 3670 -3914 615 148 0 0 chr11 16691917 16692018 -132091454 + AluSg/x SINE Alu 202 302 -8 8857 219 121 46 chr11 16692018 16692832 -132090640 + L1PA12 LINE L1 3670 4421 -3163 2572 56 0 3 chr11 16692832 16693134 -132090338 + AluY SINE Alu 1 301 -10 8857 219 121 46 chr11 16693134 16693510 -132089962 + L1PA12 LINE L1 4421 5614 -1970 509 147 0 0 chr11 16693510 16693585 -132089887 + AluS SINE Alu 1 75 -238 1995 139 0 20 chr11 16693593 16693895 -132089577 + AluSx SINE Alu 1 296 -16 305 159 148 0 chr11 16693897 16693985 -132089487 + L1MB7 LINE L1 5588 5688 -1877 590 198 19 116 chr11 16694086 16694344 -132089128 + MER41-int LTR ERV1 406 638 -5308 960 164 106 14 chr11 16694368 16694575 -132088897 + MSTA LTR MaLR 203 428 0 6112 100 3 21 chr11 16694586 16695110 -132088362 + L1PA14 LINE L1 4797 5329 -832 2088 138 7 0 chr11 16695110 16695400 -132088072 + AluSx SINE Alu 1 292 -20 6112 100 3 21 chr11 16695400 16696236 -132087236 + L1PA14 LINE L1 5329 6161 0 1769 120 101 0 chr11 16696267 16696543 -132086929 + AluSx SINE Alu 1 304 -8 317 154 393 26 chr11 16696992 16697109 -132086363 + MIR SINE MIR 2 161 -101 890 210 28 17 chr11 16697244 16697420 -132086052 + MER5A DNA MER1_type 12 189 0 3260 129 18 27 chr11 16697562 16697982 -132085490 + L1MB7 LINE L1 6866 7281 -322 1633 159 94 4 chr11 16697982 16698258 -132085214 + AluJb SINE Alu 1 301 -11 3260 129 18 27 chr11 16698258 16698435 -132085037 + L1MB7 LINE L1 7281 7458 -145 693 133 12 91 chr11 16698815 16698867 -132084605 + L1MB8 LINE L1 6022 6077 -101 2079 121 7 26 chr11 16698867 16699172 -132084300 + AluSx SINE Alu 1 299 -13 693 133 12 91 chr11 16699172 16699284 -132084188 + L1MB8 LINE L1 6077 6173 -5 309 230 9 35 chr11 16699574 16699687 -132083785 + L1ME4a LINE L1 5967 6076 -45 500 256 19 0 chr11 16700006 16700162 -132083310 - L1MC4a LINE L1 -1900 5908 5750 1769 167 3 29 chr11 16700170 16700476 -132082996 - AluSx SINE Alu -12 300 3 19069 100 11 5 chr11 16700722 16702770 -132080702 + L1P3 LINE L1 700 2787 -3674 182 61 0 30 chr11 16702770 16702803 -132080669 + (TA)n Simple_repeat Simple_repeat 2 33 0 19069 100 11 5 chr11 16702803 16704544 -132078928 + L1P3 LINE L1 2787 4515 -1946 180 0 0 0 chr11 16704656 16704676 -132078796 + (A)n Simple_repeat Simple_repeat 1 20 0 467 231 111 60 chr11 16706296 16706495 -132076977 + MIR SINE MIR 48 256 -6 1612 145 35 35 chr11 16706525 16706807 -132076665 - AluJo SINE Alu -30 282 1 215 300 89 58 chr11 16706997 16707187 -132076285 + L2 LINE L2 1789 1984 -1330 592 224 164 5 chr11 16707228 16707429 -132076043 + Charlie2 DNA MER1_type 91 323 -2539 652 183 162 35 chr11 16707443 16707672 -132075800 + Charlie2 DNA MER1_type 1887 2144 -718 2165 129 0 0 chr11 16707885 16708180 -132075292 - AluSq SINE Alu -18 295 1 637 153 65 40 chr11 16708389 16708513 -132074959 - L2 LINE L2 -14 3299 3173 192 77 0 0 chr11 16708527 16708553 -132074919 + (CA)n Simple_repeat Simple_repeat 2 27 0 309 210 100 40 chr11 16708567 16708667 -132074805 + L1MCa LINE L1 1959 2064 -4362 921 103 0 8 chr11 16708683 16708800 -132074672 - AluSc SINE Alu -187 122 7 197 81 0 27 chr11 16708804 16708841 -132074631 + (TA)n Simple_repeat Simple_repeat 2 37 0 780 271 133 32 chr11 16708887 16709264 -132074208 - L2 LINE L2 -445 2869 2455 1051 180 0 0 chr11 16709264 16709425 -132074047 + FRAM SINE Alu 1 158 -18 2024 99 33 7 chr11 16709430 16709755 -132073717 + AluSc SINE Alu 1 332 0 2010 116 4 14 chr11 16710522 16710797 -132072675 + AluSp SINE Alu 1 272 -41 1017 147 51 0 chr11 16711187 16711364 -132072108 + MER20 DNA MER1_type 33 218 -1 * 1627 224 102 12 chr11 16711364 16711763 -132071709 + Zaphod DNA AcHobo 9 443 -3588 710 197 34 0 chr11 16711848 16711965 -132071507 - FLAM_A SINE Alu -12 121 1 230 284 11 32 chr11 16711974 16712069 -132071403 + L1MEd LINE L1 1165 1257 -4862 1769 163 10 13 chr11 16712101 16712402 -132071070 + AluJo SINE Alu 11 310 -2 1777 159 13 19 chr11 16712539 16712853 -132070619 - AluJb SINE Alu 0 312 1 273 229 0 57 chr11 16712946 16713051 -132070421 + L1M2 LINE L1 2429 2527 -4322 355 354 19 15 chr11 16713068 16713274 -132070198 + L1ME3A LINE L1 156 362 -6034 975 181 0 6 chr11 16713704 16713870 -132069602 + FRAM SINE Alu 1 165 -1 1469 267 61 38 chr11 16713883 16714466 -132069006 + L1ME3A LINE L1 4550 5155 -1060 2219 123 7 0 chr11 16714466 16714767 -132068705 - AluSq SINE Alu -10 303 1 1469 267 61 38 chr11 16714767 16714918 -132068554 + L1ME3A LINE L1 5155 5301 -914 360 262 123 63 chr11 16715153 16715405 -132068067 + LTR16C LTR ERVL 214 480 -11 305 301 80 0 chr11 16715418 16715635 -132067837 + L1ME3A LINE L1 5334 5578 -661 1267 232 94 71 chr11 16715636 16716158 -132067314 - MLT1F LTR MaLR -8 534 1 646 255 29 95 chr11 16716160 16716635 -132066837 + L1ME3A LINE L1 5582 6024 -215 237 274 62 26 chr11 16716790 16716903 -132066569 + L1ME3A LINE L1 6115 6231 -8 2417 92 0 7 chr11 16716911 16717217 -132066255 + AluSx SINE Alu 1 304 -8 424 264 136 7 chr11 16718267 16718407 -132065065 - MIR SINE MIR -10 252 95 399 196 9 89 chr11 16718408 16718520 -132064952 + MIR SINE MIR 160 262 0 609 271 32 7 chr11 16718732 16718887 -132064585 - L2 LINE L2 0 3313 3155 870 214 68 44 chr11 16718939 16719187 -132064285 - MIR SINE MIR -3 259 6 329 286 210 8 chr11 16719948 16720067 -132063405 + MIR SINE MIR 12 154 -108 290 288 46 46 chr11 16720099 16720252 -132063220 - MLT1J2 LTR MaLR -28 422 270 * 310 307 24 48 chr11 16720248 16720414 -132063058 - MLT1I LTR MaLR -169 240 79 185 284 54 40 chr11 16723628 16723702 -132059770 + MER5A DNA MER1_type 55 129 -60 278 26 26 0 chr11 16724159 16724198 -132059274 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 2378 88 3 3 chr11 16725737 16726033 -132057439 + AluSp SINE Alu 1 296 -17 597 304 100 5 chr11 16727600 16727820 -132055652 + MIR SINE MIR 12 252 -10 369 230 23 0 chr11 16728175 16728262 -132055210 + MIR SINE MIR 53 141 -67 591 132 0 0 chr11 16729819 16729933 -132053539 + (CA)n Simple_repeat Simple_repeat 2 115 0 379 297 54 0 chr11 16731674 16731785 -132051687 - MIR SINE MIR -133 129 13 203 315 77 23 chr11 16731846 16731976 -132051496 + L2 LINE L2 2763 2899 -415 193 363 12 12 chr11 16732069 16732149 -132051323 + L2 LINE L2 3193 3272 0 438 192 0 50 chr11 16732536 16732635 -132050837 + L3b LINE CR1 1291 1384 -199 429 274 9 0 chr11 16733172 16733278 -132050194 - L2 LINE L2 -8 3264 3158 296 214 36 89 chr11 16733673 16733785 -132049687 - MIR SINE MIR -76 186 81 748 211 106 10 chr11 16738121 16738320 -132045152 + MIR SINE MIR 24 241 -21 444 256 21 117 chr11 16740130 16740505 -132042967 + L1ME3A LINE L1 5811 6149 -21 1076 147 0 0 chr11 16740526 16740683 -132042789 - FRAM SINE Alu -16 160 4 248 318 91 30 chr11 16740855 16740987 -132042485 - MIR3 SINE MIR -68 140 1 209 347 25 50 chr11 16741651 16741772 -132041700 + MIR SINE MIR 71 188 -74 484 234 0 0 chr11 16741970 16742064 -132041408 + MIR3 SINE MIR 101 194 -14 1248 180 19 45 chr11 16743026 16743258 -132040214 + L1MB2 LINE L1 5902 6128 -43 2041 141 10 0 chr11 16743258 16743557 -132039915 + AluSx SINE Alu 1 302 -10 1248 180 19 45 chr11 16743557 16743591 -132039881 + L1MB2 LINE L1 6128 6161 -10 2378 102 3 13 chr11 16743592 16743907 -132039565 - AluSq SINE Alu -1 312 1 1886 145 25 41 chr11 16744060 16744402 -132039070 + L1MB7 LINE L1 5793 6130 -54 1702 175 10 38 chr11 16744402 16744716 -132038756 - AluJo SINE Alu -7 305 1 1886 145 25 41 chr11 16744716 16744766 -132038706 + L1MB7 LINE L1 6130 6179 -5 27 29 0 0 chr11 16744786 16744820 -132038652 + AT_rich Low_complexity Low_complexity 1 34 0 232 269 0 0 chr11 16745178 16745230 -132038242 + L2 LINE L2 3220 3271 -1 816 270 83 40 chr11 16746277 16746732 -132036740 + L1ME4a LINE L1 5353 5827 -294 692 189 31 6 chr11 16746747 16746906 -132036566 + MER3 DNA MER1_type 3 165 -44 220 274 20 0 chr11 16747843 16747894 -132035578 + L2 LINE L2 3213 3264 -8 388 288 39 33 chr11 16749695 16749848 -132033624 + MIR SINE MIR 43 196 -66 2334 112 0 0 chr11 16750296 16750592 -132032880 - AluSg SINE Alu -12 298 3 2300 101 0 0 chr11 16753259 16753567 -132029905 + AluSg SINE Alu 2 309 -1 326 326 29 40 chr11 16753724 16753899 -132029573 + L2 LINE L2 3100 3272 0 1103 156 0 6 chr11 16755516 16755695 -132027777 - MER5B DNA MER1_type 0 178 1 860 214 44 11 chr11 16755703 16755885 -132027587 - MER5A DNA MER1_type 0 189 2 460 282 46 75 chr11 16755897 16756071 -132027401 + MER5B DNA MER1_type 4 172 -6 382 288 106 24 chr11 16756085 16756255 -132027217 - MER5A DNA MER1_type 0 189 6 415 291 49 39 chr11 16756643 16756846 -132026626 + MIR SINE MIR 51 255 -7 429 285 199 0 chr11 16757427 16757578 -132025894 - L3 LINE CR1 -103 1474 1294 259 307 23 0 chr11 16757891 16757979 -132025493 + MLT1K LTR MaLR 499 588 0 364 304 117 9 chr11 16758040 16758270 -132025202 - L3 LINE CR1 -473 1104 850 345 322 137 0 chr11 16758581 16758764 -132024708 + MIR SINE MIR 28 235 -27 213 260 40 30 chr11 16762343 16762443 -132021029 + MIR SINE MIR 39 139 -69 1718 166 38 0 chr11 16763277 16763567 -132019905 - AluSx SINE Alu -11 301 1 421 193 36 0 chr11 16763756 16763839 -132019633 + MIR SINE MIR 70 155 -107 671 216 70 38 chr11 16764270 16764455 -132019017 + MIR SINE MIR 72 262 0 248 167 0 0 chr11 16765775 16765817 -132017655 - MER96 DNA MER1_type? -32 143 102 587 260 35 1 chr11 16765894 16766062 -132017410 + MIR SINE MIR 16 192 -30 2248 103 0 0 chr11 16766544 16766855 -132016617 - AluY SINE Alu 0 311 1 2089 94 0 0 chr11 16766873 16767150 -132016322 - AluSx SINE Alu -35 277 1 203 289 19 19 chr11 16767240 16767292 -132016180 + MIR SINE MIR 20 71 -191 229 245 0 0 chr11 16767307 16767356 -132016116 - MIR SINE MIR -5 257 209 886 145 10 105 chr11 16767364 16767429 -132016043 + MER5A DNA MER1_type 9 79 -110 2169 121 57 25 chr11 16767429 16767833 -132015639 + L1MA7 LINE L1 5875 6291 0 886 145 10 105 chr11 16767833 16767967 -132015505 + MER5A DNA MER1_type 79 189 0 419 228 59 44 chr11 16767999 16768135 -132015337 + MIR SINE MIR 71 208 -54 234 91 0 0 chr11 16770254 16770287 -132013185 + (A)n Simple_repeat Simple_repeat 1 33 0 635 197 11 112 chr11 16770499 16770677 -132012795 + MER5B DNA MER1_type 5 164 -14 197 277 43 0 chr11 16770680 16770727 -132012745 - MER5B DNA MER1_type 0 178 130 1590 168 10 47 chr11 16770735 16771062 -132012410 - AluJo SINE Alu 0 316 1 417 225 0 22 chr11 16771063 16771152 -132012320 + MER5B DNA MER1_type 35 121 -57 223 287 178 0 chr11 16771188 16771317 -132012155 + L2 LINE L2 2168 2319 -995 373 189 176 40 chr11 16771409 16771557 -132011915 + L2 LINE L2 2285 2452 -862 3248 85 9 0 chr11 16771564 16772010 -132011462 + L1MA3 LINE L1 5696 6145 -160 576 182 68 61 chr11 16772010 16772142 -132011330 + AluJo SINE Alu 2 134 -178 901 115 29 9 chr11 16772142 16772291 -132011181 + L1MA3 LINE L1 6123 6279 -33 448 298 279 13 chr11 16772291 16772603 -132010869 + L2 LINE L2 2447 2841 -473 476 311 81 18 chr11 16773592 16773814 -132009658 + MIR SINE MIR 15 250 -12 593 318 71 62 chr11 16774367 16774773 -132008699 + L2 LINE L2 2863 3272 0 560 302 73 6 chr11 16775053 16775232 -132008240 - MIR SINE MIR -70 192 2 2751 107 3 0 chr11 16775893 16776267 -132007205 + THE1C LTR MaLR 1 375 0 638 244 114 51 chr11 16776418 16776767 -132006705 + MLT1K LTR MaLR 30 520 -68 1415 147 33 62 chr11 16776767 16777073 -132006399 - AluJo SINE Alu -13 299 3 638 244 114 51 chr11 16777073 16777145 -132006327 + MLT1K LTR MaLR 520 586 -2 1720 125 4 0 chr11 16777299 16777547 -132005925 + AluSx SINE Alu 46 294 -18 1583 192 0 13 chr11 16777728 16778036 -132005436 - AluJo SINE Alu -8 304 1 181 323 52 21 chr11 16778437 16778533 -132004939 - L2 LINE L2 -7 3306 3208 791 231 99 24 chr11 16779390 16779602 -132003870 + MIR SINE MIR 24 251 -11 836 292 92 22 chr11 16779610 16780065 -132003407 + MLT1J LTR MaLR 25 511 0 227 308 65 0 chr11 16781524 16781631 -132001841 - MIR SINE MIR -6 256 143 597 103 0 0 chr11 16781650 16781728 -132001744 + AluS SINE Alu 2 79 -233 261 0 0 0 chr11 16781729 16781758 -132001714 + (TA)n Simple_repeat Simple_repeat 2 30 0 2081 121 16 0 chr11 16781760 16782067 -132001405 - AluSx SINE Alu 0 312 1 1894 147 0 3 chr11 16782749 16783042 -132000430 + AluJb SINE Alu 1 292 -20 521 246 171 37 chr11 16783343 16783530 -131999942 - MIR SINE MIR -20 242 31 777 291 85 66 chr11 16783679 16784197 -131999275 + MLT1K LTR MaLR 61 588 0 2181 125 0 0 chr11 16784525 16784887 -131998585 - AluSx SINE Alu 0 362 1 436 288 14 7 chr11 16785112 16785251 -131998221 - MER117 DNA MER1_type -56 141 2 452 273 98 44 chr11 16785908 16785989 -131997483 + L1MC4a LINE L1 5297 5372 -2436 1500 186 0 23 chr11 16785989 16786295 -131997177 + AluJo SINE Alu 1 299 -13 452 273 98 44 chr11 16786295 16786452 -131997020 + L1MC4a LINE L1 5372 5558 -2250 2268 64 34 0 chr11 16786452 16786748 -131996724 - AluY SINE Alu -5 306 1 452 273 98 44 chr11 16786748 16786823 -131996649 + L1MC4a LINE L1 5558 5628 -2180 327 320 50 10 chr11 16786889 16786989 -131996483 + L1MC4a LINE L1 5768 5871 -1937 34 72 0 0 chr11 16787142 16787211 -131996261 + AT_rich Low_complexity Low_complexity 1 69 0 250 178 0 27 chr11 16787224 16787265 -131996207 + (TA)n Simple_repeat Simple_repeat 1 41 -30 1861 124 70 33 chr11 16787265 16787595 -131995877 - MER2 DNA MER2_type -1 343 2 250 178 0 27 chr11 16787595 16787626 -131995846 + (TA)n Simple_repeat Simple_repeat 41 71 0 285 290 270 28 chr11 16787698 16787950 -131995522 + L3 LINE CR1 344 656 -921 245 250 58 0 chr11 16787972 16788024 -131995448 - L2 LINE L2 0 3272 3218 2127 89 7 4 chr11 16788041 16788343 -131995129 + AluSq SINE Alu 1 303 0 1071 85 0 179 chr11 16790017 16790252 -131993220 + 7SK RNA RNA 1 193 0 207 0 0 0 chr11 16790358 16790381 -131993091 + (A)n Simple_repeat Simple_repeat 1 23 0 476 241 102 24 chr11 16790550 16790716 -131992756 - MIR SINE MIR -10 252 74 892 142 51 71 chr11 16790720 16790917 -131992555 + L2 LINE L2 3120 3312 -1 206 208 75 19 chr11 16790905 16790958 -131992514 - MIR SINE MIR -135 73 18 * 1896 139 11 0 chr11 16791424 16791730 -131991742 + AluSx SINE Alu 1 309 0 745 316 157 30 chr11 16792650 16793108 -131990364 - L2 LINE L2 -12 3301 2902 1761 157 4 0 chr11 16793108 16793433 -131990039 - AluJb SINE Alu 0 326 1 745 316 157 30 chr11 16793433 16793767 -131989705 - L2 LINE L2 -411 2902 2395 1975 140 0 0 chr11 16793769 16794077 -131989395 + AluSx SINE Alu 1 308 -4 192 77 0 0 chr11 16794085 16794111 -131989361 + (GAGAA)n Simple_repeat Simple_repeat 5 30 0 789 241 65 49 chr11 16794151 16794396 -131989076 + MIR SINE MIR 8 256 -6 510 273 96 120 chr11 16794692 16794845 -131988627 - L2 LINE L2 -159 3113 2958 2348 56 13 0 chr11 16794845 16795147 -131988325 - AluY SINE Alu -5 306 1 510 273 96 120 chr11 16795147 16795307 -131988165 - L2 LINE L2 -314 2958 2796 2098 106 0 39 chr11 16795307 16795618 -131987854 + AluSq SINE Alu 5 303 -10 510 273 96 120 chr11 16795618 16795751 -131987721 - L2 LINE L2 -476 2796 2624 222 292 0 0 chr11 16795751 16795799 -131987673 - MIR SINE MIR -3 259 212 510 273 96 120 chr11 16795799 16795888 -131987584 - L2 LINE L2 -648 2624 2534 222 398 39 19 chr11 16795980 16796083 -131987389 + L2 LINE L2 3153 3257 -15 1545 214 104 3 chr11 16796142 16796525 -131986947 - Charlie4a DNA MER1_type 0 508 87 279 213 70 98 chr11 16797390 16797543 -131985929 + MIR SINE MIR 42 184 -62 2186 113 3 0 chr11 16799192 16799502 -131983970 - AluSq SINE Alu -2 311 1 22 0 0 0 chr11 16800334 16800356 -131983116 + AT_rich Low_complexity Low_complexity 1 22 0 643 202 0 0 chr11 16800831 16800945 -131982527 + FLAM_C SINE Alu 15 128 -15 219 349 0 0 chr11 16801196 16801262 -131982210 + L2 LINE L2 2994 3059 -213 293 279 131 16 chr11 16801778 16801900 -131981572 + L2 LINE L2 3137 3272 0 312 322 56 56 chr11 16802031 16802245 -131981227 - L2 LINE L2 -788 2526 2313 297 282 47 57 chr11 16803329 16803484 -131979988 + MIR SINE MIR 40 190 -60 2062 106 0 0 chr11 16805452 16805780 -131977692 - AluSx SINE Alu 0 328 1 334 244 76 17 chr11 16805829 16805948 -131977524 - L1ME4a LINE L1 -29 6092 5967 2313 77 3 0 chr11 16806257 16806555 -131976917 - AluSq SINE Alu -14 299 1 476 337 57 29 chr11 16807024 16807374 -131976098 - MARNA DNA Mariner -179 407 48 319 330 26 0 chr11 16807272 16807387 -131976085 + MARNA DNA Mariner 437 554 -32 * 360 292 183 0 chr11 16808296 16808433 -131975039 - MIR SINE MIR -13 249 88 266 323 103 41 chr11 16808558 16808753 -131974719 + MIR SINE MIR 12 218 -44 613 213 47 8 chr11 16809007 16809134 -131974338 + AluSq/x SINE Alu 2 133 -180 1404 172 60 0 chr11 16809144 16809411 -131974061 + AluSx SINE Alu 1 283 -29 314 294 130 14 chr11 16811612 16811758 -131971714 + L3b LINE CR1 1113 1275 -308 1083 194 108 0 chr11 16811878 16812110 -131971362 + MIR SINE MIR 2 258 -4 23 0 0 0 chr11 16812136 16812159 -131971313 + AT_rich Low_complexity Low_complexity 1 23 0 2765 96 6 3 chr11 16812250 16812613 -131970859 + THE1B LTR MaLR 1 364 0 723 272 81 102 chr11 16812619 16813049 -131970423 - L3 LINE CR1 -188 1389 969 1794 145 35 0 chr11 16813205 16813494 -131969978 + AluSx SINE Alu 1 299 -13 534 250 210 55 chr11 16813585 16813618 -131969854 + MLT1I LTR MaLR 4 31 -378 1943 117 28 3 chr11 16813618 16813909 -131969563 - AluSg SINE Alu -12 298 1 534 250 210 55 chr11 16813909 16814090 -131969382 + MLT1I LTR MaLR 31 183 -226 2353 81 0 0 chr11 16814090 16814386 -131969086 + AluSq SINE Alu 1 296 -17 534 250 210 55 chr11 16814386 16814518 -131968954 + MLT1I LTR MaLR 183 405 -4 1097 156 56 0 chr11 16814953 16815132 -131968340 - MER5A DNA MER1_type 0 189 1 305 316 58 7 chr11 16815649 16815788 -131967684 + L2 LINE L2 2425 2570 -744 227 162 0 0 chr11 16816008 16816045 -131967427 + MLT1I LTR MaLR 370 406 -3 363 357 8 0 chr11 16816264 16816390 -131967082 + L2 LINE L2 3184 3310 -3 463 273 169 6 chr11 16817136 16817308 -131966164 + MIR SINE MIR 23 222 -40 599 182 73 21 chr11 16817388 16817580 -131965892 + L1MC5 LINE L1 7729 7930 -31 510 202 9 26 chr11 16818105 16818127 -131965345 - FLAM_A SINE Alu -188 123 102 1919 128 0 42 chr11 16818127 16818440 -131965032 + AluJb SINE Alu 1 300 -12 510 202 9 26 chr11 16818440 16818531 -131964941 - FLAM_A SINE Alu -209 102 12 1917 116 28 0 chr11 16819751 16820036 -131963436 - AluSx SINE Alu -15 297 5 309 271 115 8 chr11 16820176 16820298 -131963174 - L1ME4a LINE L1 -205 5916 5782 1406 165 19 4 chr11 16820306 16820566 -131962906 - AluJo SINE Alu -23 289 26 377 257 114 9 chr11 16820601 16820706 -131962766 - L2 LINE L2 -7 3306 3191 276 305 31 31 chr11 16820772 16820900 -131962572 - L1ME4a LINE L1 -426 5695 5568 2155 114 0 0 chr11 16821440 16821739 -131961733 - AluSx SINE Alu -13 299 1 1850 161 3 0 chr11 16822000 16822298 -131961174 + AluJb SINE Alu 4 302 -10 307 213 0 64 chr11 16822999 16823093 -131960379 - MIR SINE MIR -57 205 118 1792 160 13 3 chr11 16823209 16823516 -131959956 - AluJb SINE Alu -2 310 1 510 281 31 12 chr11 16825564 16825724 -131957748 + MIR SINE MIR 94 256 -6 1413 291 86 27 chr11 16825751 16826376 -131957096 + L2 LINE L2 2316 2977 -337 965 153 0 6 chr11 16826382 16826539 -131956933 - AluSg/x SINE Alu -27 283 128 433 185 22 33 chr11 16827890 16827982 -131955490 + MIR SINE MIR 58 148 -60 389 259 118 22 chr11 16828042 16828177 -131955295 + MIR SINE MIR 36 183 -79 355 250 0 43 chr11 16828600 16828692 -131954780 + MIR3 SINE MIR 121 208 0 522 186 97 0 chr11 16829838 16829951 -131953521 + L2 LINE L2 3189 3312 -1 583 196 7 26 chr11 16830098 16830241 -131953231 + MER69 DNA AcHobo 9 2488 -38 220 226 0 19 chr11 16830593 16830646 -131952826 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 549 311 51 6 chr11 16830689 16830866 -131952606 - MIR SINE MIR -55 207 23 341 265 97 107 chr11 16831671 16831867 -131951605 - L1MC4a LINE L1 -1786 6022 5829 2126 121 0 7 chr11 16832108 16832413 -131951059 + AluSx SINE Alu 1 303 -9 232 250 0 0 chr11 16832674 16832722 -131950750 + Charlie8 DNA MER1_type 2369 2416 -1 1868 140 39 0 chr11 16832801 16833087 -131950385 + AluSx SINE Alu 2 298 -14 1196 138 5 25 chr11 16833119 16833315 -131950157 + AluSq SINE Alu 2 193 -120 2054 108 3 19 chr11 16833452 16833766 -131949706 + AluSx SINE Alu 1 309 -3 2304 90 0 0 chr11 16834170 16834470 -131949002 + AluSx SINE Alu 2 301 -11 227 122 73 0 chr11 16834551 16834592 -131948880 - L2 LINE L2 -1 3312 3269 649 177 103 6 chr11 16834788 16834963 -131948509 + L1M2 LINE L1 1812 2003 -4846 486 151 0 0 chr11 16834963 16835036 -131948436 + AluJ SINE Alu 59 131 -181 248 70 23 0 chr11 16835042 16835085 -131948387 + (TCTCCC)n Simple_repeat Simple_repeat 1 44 0 9660 59 3 86 chr11 16835090 16836599 -131946873 + SVA Other Other 2 1386 0 26 0 0 0 chr11 16836599 16836625 -131946847 + AT_rich Low_complexity Low_complexity 1 26 0 249 74 19 148 chr11 16836655 16836709 -131946763 + AluJb SINE Alu 102 148 -153 1311 183 53 99 chr11 16836711 16837143 -131946329 + LTR7 LTR ERV1 1 412 -38 180 0 0 0 chr11 16837159 16837179 -131946293 + (TA)n Simple_repeat Simple_repeat 2 21 0 804 211 0 12 chr11 16837184 16837355 -131946117 + AluJb SINE Alu 133 301 -11 3417 245 21 4 chr11 16837356 16838278 -131945194 + L1PA15-16 LINE L1 1451 2391 -3755 363 342 26 0 chr11 16838331 16838448 -131945024 - MIR3 SINE MIR -4 204 85 1509 162 35 17 chr11 16838625 16838803 -131944669 - AluJo SINE Alu -7 305 119 252 0 0 0 chr11 16838803 16838831 -131944641 + (CTATT)n Simple_repeat Simple_repeat 5 32 0 1509 162 35 17 chr11 16838831 16838942 -131944530 - AluJo SINE Alu -193 119 11 958 224 138 4 chr11 16839055 16839287 -131944185 + MLT1C LTR MaLR 205 467 0 994 325 88 35 chr11 16839302 16839935 -131943537 + L3 LINE CR1 910 1576 -1 234 0 0 0 chr11 16840144 16840170 -131943302 + (TG)n Simple_repeat Simple_repeat 1 26 0 1419 173 0 82 chr11 16840170 16840508 -131942964 - AluJb SINE Alu 0 313 1 1146 198 25 0 chr11 16840565 16840767 -131942705 - MLT1A1 LTR MaLR -52 313 107 324 231 167 9 chr11 16840848 16840956 -131942516 - MIR SINE MIR -56 206 82 342 272 0 22 chr11 16841106 16841198 -131942274 + MIR3 SINE MIR 104 193 -15 195 314 114 0 chr11 16842281 16842351 -131941121 + MIR SINE MIR 16 93 -115 811 237 45 0 chr11 16842629 16842806 -131940666 - MIR SINE MIR -47 215 31 438 330 20 15 chr11 16843824 16844021 -131939451 + L2 LINE L2 2221 2418 -896 186 312 159 60 chr11 16844173 16844487 -131938985 + L2 LINE L2 2443 2787 -527 253 296 153 35 chr11 16844830 16845001 -131938471 - MIR SINE MIR -70 192 4 514 301 109 5 chr11 16846153 16846346 -131937126 + MIR SINE MIR 35 247 -15 306 294 22 38 chr11 16846443 16846627 -131936845 + L2 LINE L2 2563 2743 -571 499 269 114 5 chr11 16846638 16846857 -131936615 + L1M4 LINE L1 4442 4684 -1462 2243 65 3 7 chr11 16846952 16847245 -131936227 + AluSp SINE Alu 1 292 -21 409 320 76 15 chr11 16847399 16847596 -131935876 - MIR SINE MIR -2 260 52 2216 86 10 7 chr11 16848581 16848884 -131934588 - AluSx SINE Alu -8 304 1 4061 172 35 28 chr11 16849266 16849324 -131934148 - L1MB7 LINE L1 -10 6174 6118 1659 169 7 7 chr11 16849324 16849625 -131933847 + AluJo SINE Alu 1 301 -11 4061 172 35 28 chr11 16849625 16850384 -131933088 - L1MB7 LINE L1 -66 6118 5351 662 272 108 19 chr11 16850412 16850625 -131932847 + MIR SINE MIR 31 262 0 188 284 0 45 chr11 16850965 16851032 -131932440 + L2 LINE L2 3187 3250 -22 278 246 167 37 chr11 16852071 16852286 -131931186 + L1ME4a LINE L1 5692 5934 -187 1704 167 3 11 chr11 16852708 16852995 -131930477 + AluJb SINE Alu 1 285 -27 33 0 0 0 chr11 16852995 16853028 -131930444 + AT_rich Low_complexity Low_complexity 1 33 0 238 269 0 30 chr11 16853595 16853662 -131929810 - MIR SINE MIR -112 150 86 656 162 17 8 chr11 16853841 16853958 -131929514 + MLT1B LTR MaLR 1 118 -272 654 37 0 0 chr11 16853958 16854039 -131929433 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 468 25 113 0 chr11 16854050 16854130 -131929342 + CT-rich Low_complexity Low_complexity 3 91 0 5668 75 21 25 chr11 16854071 16854941 -131928531 + SVA Other Other 1 866 -520 6534 57 11 64 chr11 16854958 16855965 -131927507 + SVA Other Other 433 1386 0 1378 180 50 32 chr11 16855980 16856182 -131927290 + MLT1B LTR MaLR 108 318 -72 2241 102 0 0 chr11 16856182 16856486 -131926986 - AluSx SINE Alu -8 304 1 1378 180 50 32 chr11 16856486 16856561 -131926911 + MLT1B LTR MaLR 318 390 0 456 224 218 42 chr11 16856687 16856852 -131926620 + MIR SINE MIR 50 243 -19 249 242 169 8 chr11 16857261 16857385 -131926087 + MIR3 SINE MIR 22 165 -43 331 263 127 52 chr11 16857838 16858051 -131925421 - MIR SINE MIR -14 248 20 1165 144 39 0 chr11 16858277 16858457 -131925015 + MER20 DNA MER1_type 4 190 -29 310 205 86 51 chr11 16858556 16858673 -131924799 + MIR SINE MIR 30 147 -61 215 345 36 0 chr11 16858690 16858774 -131924698 - MER5A DNA MER1_type -1 188 102 603 224 60 8 chr11 16859863 16859997 -131923475 + MER5B DNA MER1_type 38 178 0 380 266 42 42 chr11 16861233 16861376 -131922096 + L3b LINE CR1 1281 1423 -160 430 274 40 23 chr11 16861655 16861830 -131921642 + L1ME4a LINE L1 5710 5887 -234 289 266 154 14 chr11 16861847 16861990 -131921482 + L1ME4a LINE L1 5955 6117 -4 377 276 12 26 chr11 16862454 16862600 -131920872 - MIR SINE MIR -62 146 12 306 190 174 58 chr11 16862896 16863017 -131920455 - MIR SINE MIR -81 181 47 7901 15 21 0 chr11 16863056 16864041 -131919431 - L1PA3 LINE L1 -4 6151 5162 615 313 61 0 chr11 16864076 16864274 -131919198 + MIR SINE MIR 21 230 -32 2005 135 0 0 chr11 16864627 16864930 -131918542 + AluSx SINE Alu 1 303 -9 279 260 82 0 chr11 16864947 16865020 -131918452 + L2 LINE L2 3180 3258 -55 2389 171 100 7 chr11 16865022 16865484 -131917988 - MLT1D LTR MaLR 0 505 1 196 296 0 0 chr11 16865484 16865528 -131917944 + L2 LINE L2 3215 3258 -14 227 283 47 47 chr11 16866128 16866234 -131917238 + MIR SINE MIR 39 144 -118 2119 114 0 10 chr11 16866619 16866927 -131916545 + AluSq SINE Alu 1 305 -8 388 293 56 50 chr11 16866970 16867087 -131916385 + MIR3 SINE MIR 30 149 -59 1395 181 43 26 chr11 16867087 16867391 -131916081 + AluJo SINE Alu 3 311 -1 388 293 56 50 chr11 16867391 16867436 -131916036 + MIR3 SINE MIR 149 192 -16 443 251 193 11 chr11 16867673 16867860 -131915612 + MIR SINE MIR 42 262 0 346 288 88 24 chr11 16867856 16867981 -131915491 + L2 LINE L2 3104 3236 -36 * 197 232 87 58 chr11 16868327 16868396 -131915076 + MIR SINE MIR 38 108 -100 312 314 124 0 chr11 16869482 16869603 -131913869 - MIR SINE MIR -60 202 67 464 267 144 44 chr11 16869978 16870158 -131913314 - MIR SINE MIR -34 228 31 266 332 21 75 chr11 16874165 16874352 -131909120 - L2 LINE L2 -84 3188 3012 251 352 19 9 chr11 16874593 16874701 -131908771 + MIR SINE MIR 17 125 -83 754 178 51 81 chr11 16874701 16874898 -131908574 + AluJo SINE Alu 112 302 -10 886 243 49 8 chr11 16875373 16875636 -131907836 + L1ME4a LINE L1 5571 5844 -277 882 181 0 12 chr11 16875868 16876028 -131907444 + FRAM SINE Alu 8 165 -11 1636 151 26 26 chr11 16876143 16876454 -131907018 - AluJb SINE Alu -1 311 1 198 0 0 0 chr11 16876603 16876625 -131906847 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 372 226 135 15 chr11 16876630 16876763 -131906709 + L1ME4a LINE L1 5973 6121 0 2389 72 0 3 chr11 16877422 16877729 -131905743 + AluSc SINE Alu 1 306 -3 955 184 0 0 chr11 16877997 16878171 -131905301 + FRAM SINE Alu 1 172 -4 21 0 0 0 chr11 16878517 16878538 -131904934 + AT_rich Low_complexity Low_complexity 1 21 0 409 324 64 6 chr11 16878865 16879038 -131904434 - MER5A DNA MER1_type 0 189 7 1574 153 42 39 chr11 16879140 16879268 -131904204 + AluSx SINE Alu 1 127 -185 219 43 43 22 chr11 16879268 16879314 -131904158 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 1574 153 42 39 chr11 16879314 16879492 -131903980 + AluSx SINE Alu 127 308 -4 522 272 103 5 chr11 16879773 16879968 -131903504 + MIR SINE MIR 49 262 0 1753 162 0 23 chr11 16879977 16880280 -131903192 - AluJo SINE Alu -12 300 5 489 293 273 5 chr11 16880286 16880801 -131902671 - L2 LINE L2 -6 3307 2648 864 248 62 9 chr11 16880801 16881027 -131902445 - MIR SINE MIR -1 261 24 913 310 47 45 chr11 16881035 16881461 -131902011 - L2 LINE L2 -648 2666 2240 1917 105 47 0 chr11 16882852 16883129 -131900343 + AluSx SINE Alu 1 290 -22 2166 101 0 7 chr11 16883820 16884126 -131899346 + AluSg SINE Alu 2 305 -5 236 217 0 33 chr11 16884648 16884708 -131898764 + MIR SINE MIR 78 135 -73 420 268 131 44 chr11 16884951 16885134 -131898338 - L2 LINE L2 0 3313 3115 2196 103 3 0 chr11 16885304 16885605 -131897867 - AluSp SINE Alu -9 304 3 1793 167 0 10 chr11 16886829 16887140 -131896332 + AluSx SINE Alu 1 308 -4 462 317 8 0 chr11 16887799 16887922 -131895550 + L2 LINE L2 3129 3252 -20 2143 98 7 10 chr11 16887981 16888286 -131895186 - AluSx SINE Alu -8 304 1 287 261 235 39 chr11 16888925 16889078 -131894394 - L3 LINE CR1 -10 1567 1385 709 247 18 58 chr11 16889241 16889464 -131894008 - MIR SINE MIR 0 262 49 313 202 179 0 chr11 16889628 16889712 -131893760 + L2 LINE L2 3215 3313 0 721 269 148 9 chr11 16889712 16889928 -131893544 - MIR SINE MIR -8 254 9 1327 182 77 7 chr11 16890804 16891105 -131892367 - MER33 DNA MER1_type -15 309 1 319 232 61 127 chr11 16891558 16891739 -131891733 - MER5A DNA MER1_type -4 185 17 2179 100 0 0 chr11 16891770 16892061 -131891411 + AluSq SINE Alu 1 291 -22 1155 117 0 0 chr11 16892063 16892225 -131891247 + AluSg/x SINE Alu 134 295 -15 21 0 0 0 chr11 16892240 16892261 -131891211 + AT_rich Low_complexity Low_complexity 1 21 0 331 248 72 59 chr11 16892502 16892655 -131890817 - MIR SINE MIR -2 260 106 1765 134 4 0 chr11 16892672 16892934 -131890538 - AluSx SINE Alu -49 263 1 197 283 94 0 chr11 16893132 16893185 -131890287 + L2 LINE L2 3117 3174 -98 183 156 0 0 chr11 16893224 16893256 -131890216 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 242 275 0 14 chr11 16894689 16894758 -131888714 + MER5A DNA MER1_type 18 85 -104 1144 90 28 11 chr11 16894830 16895007 -131888465 + L1MA8 LINE L1 5430 5609 -682 2125 125 0 0 chr11 16895007 16895318 -131888154 + AluSx SINE Alu 1 311 -1 2143 109 10 10 chr11 16895332 16895644 -131887828 + AluSx SINE Alu 1 312 0 2318 168 67 6 chr11 16895650 16896125 -131887347 + L1MA8 LINE L1 5769 6272 -19 278 299 13 0 chr11 16896258 16896335 -131887137 + (CA)n Simple_repeat Simple_repeat 1 78 0 237 33 0 0 chr11 16896348 16896378 -131887094 + (CA)n Simple_repeat Simple_repeat 2 31 0 422 265 63 63 chr11 16897078 16897267 -131886205 - MER5A DNA MER1_type 0 189 1 196 299 143 41 chr11 16897310 16897457 -131886015 - L2 LINE L2 0 3313 3152 588 267 128 0 chr11 16898740 16898935 -131884537 - MIR SINE MIR -2 260 41 210 71 0 0 chr11 16899048 16899076 -131884396 + (ATG)n Simple_repeat Simple_repeat 3 30 0 223 351 13 0 chr11 16899223 16899300 -131884172 - MIR SINE MIR -171 91 14 973 246 124 75 chr11 16899780 16900248 -131883224 + MLT1J LTR MaLR 21 511 0 1075 199 77 9 chr11 16900307 16900528 -131882944 - MER46A DNA MER2_type 0 236 1 23 0 0 0 chr11 16900614 16900637 -131882835 + AT_rich Low_complexity Low_complexity 1 23 0 283 296 7 59 chr11 16900767 16900902 -131882570 - L2 LINE L2 -213 3059 2932 22 56 0 0 chr11 16901345 16901381 -131882091 + AT_rich Low_complexity Low_complexity 1 36 0 1654 186 20 0 chr11 16901932 16902049 -131881423 + AluJo SINE Alu 1 114 -198 192 40 0 0 chr11 16902049 16902074 -131881398 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1654 186 20 0 chr11 16902074 16902252 -131881220 + AluJo SINE Alu 114 302 -10 2355 70 0 3 chr11 16902389 16902688 -131880784 - AluSg SINE Alu -12 298 1 476 331 69 60 chr11 16902932 16903249 -131880223 + L2 LINE L2 2953 3272 0 563 168 97 0 chr11 16903607 16903720 -131879752 + FLAM_A SINE Alu 13 136 -6 752 212 0 0 chr11 16903884 16904016 -131879456 - FLAM_A SINE Alu -1 132 1 212 333 39 29 chr11 16904131 16904233 -131879239 - MIR SINE MIR -90 118 16 1133 294 44 12 chr11 16904898 16905386 -131878086 + L1MB5 LINE L1 5660 6166 -8 2365 113 0 3 chr11 16905390 16905701 -131877771 - AluSg SINE Alu 0 310 1 1974 175 0 3 chr11 16905732 16906041 -131877431 + AluJb SINE Alu 1 308 -4 402 239 77 65 chr11 16906094 16906341 -131877131 + L1ME4a LINE L1 5872 6121 0 258 281 24 0 chr11 16906415 16906497 -131876975 + L1ME4a LINE L1 5969 6052 -69 1484 95 59 0 chr11 16906779 16907000 -131876472 - L1PA14 LINE L1 0 6161 5928 684 287 79 5 chr11 16909440 16909656 -131873816 + MIR SINE MIR 20 251 -11 550 242 115 45 chr11 16909836 16910085 -131873387 + MIR SINE MIR 2 261 -1 2021 156 3 0 chr11 16910170 16910459 -131873013 - AluSx SINE Alu -22 290 1 183 245 41 0 chr11 16910716 16910765 -131872707 + MIR SINE MIR 99 149 -59 3018 175 30 17 chr11 16911576 16912176 -131871296 - L1MB4 LINE L1 -80 6100 5493 303 273 20 0 chr11 16912484 16912583 -131870889 + Charlie7 DNA MER1_type 1 101 -2511 286 241 241 8 chr11 16912575 16912708 -131870764 + Charlie7 DNA MER1_type 2434 2597 -15 * 1987 136 7 45 chr11 16912725 16913034 -131870438 + AluSx SINE Alu 1 297 -15 469 313 51 42 chr11 16913352 16913569 -131869903 + MIR SINE MIR 13 231 -31 2296 106 0 0 chr11 16913599 16913892 -131869580 + AluSx SINE Alu 1 293 -19 360 64 0 0 chr11 16913979 16914026 -131869446 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 296 209 9 chr11 16916611 16916726 -131866746 - L3b LINE CR1 -195 1388 1251 496 318 201 7 chr11 16916915 16917223 -131866249 + L3 LINE CR1 709 1076 -501 542 269 20 45 chr11 16917414 16917615 -131865857 + MLT1K LTR MaLR 393 588 0 423 294 160 9 chr11 16917616 16917847 -131865625 + L3 LINE CR1 1094 1359 -218 317 272 32 63 chr11 16917909 16918067 -131865405 + MIR SINE MIR 40 192 -70 2034 145 0 25 chr11 16918075 16918392 -131865080 + AluJb SINE Alu 1 309 -3 239 229 176 13 chr11 16918506 16918659 -131864813 + L1ME4a LINE L1 5941 6118 -3 301 305 30 0 chr11 16918986 16919117 -131864355 - L1ME4a LINE L1 -223 5898 5764 185 290 32 16 chr11 16919339 16919401 -131864071 - L2 LINE L2 -1037 2277 2215 29 70 0 0 chr11 16919413 16919470 -131864002 + AT_rich Low_complexity Low_complexity 1 57 0 2079 154 3 0 chr11 16919521 16919820 -131863652 - AluSx SINE Alu -11 301 2 2024 138 3 10 chr11 16919823 16920120 -131863352 - AluJb SINE Alu -17 295 1 1703 168 17 34 chr11 16920121 16920419 -131863053 - AluJo SINE Alu -19 293 1 573 150 71 18 chr11 16921244 16921357 -131862115 - MER5B DNA MER1_type -3 175 57 894 180 0 30 chr11 16921813 16921980 -131861492 + AluJb SINE Alu 136 297 -15 544 16 0 0 chr11 16922119 16922181 -131861291 - U6 snRNA snRNA -1 106 45 731 233 17 47 chr11 16922185 16922447 -131861025 - L1MD2 LINE L1 -51 6115 6020 509 162 0 27 chr11 16922458 16922569 -131860903 - L1MD2 LINE L1 -268 5974 5867 245 253 46 35 chr11 16922648 16922735 -131860737 + L1ME4a LINE L1 5762 5849 -272 446 195 0 0 chr11 16922813 16922890 -131860582 - MER2 DNA MER2_type -262 83 7 568 191 211 0 chr11 16922897 16923096 -131860376 + L1ME4a LINE L1 5864 6104 -17 217 324 49 20 chr11 16923802 16923904 -131859568 + MIR3 SINE MIR 81 185 -23 312 215 140 21 chr11 16924080 16924173 -131859299 + L2 LINE L2 3210 3313 0 216 358 25 0 chr11 16924815 16924896 -131858576 + L2 LINE L2 3171 3253 -19 547 268 51 19 chr11 16925042 16925199 -131858273 + MIR SINE MIR 37 198 -64 471 258 16 41 chr11 16925851 16926045 -131857427 - L1ME LINE L1 -312 5809 5621 2077 96 30 0 chr11 16926301 16926601 -131856871 - AluSg SINE Alu 0 308 1 394 237 140 0 chr11 16926704 16926797 -131856675 - MIR SINE MIR -63 145 40 321 271 365 0 chr11 16927483 16927653 -131855819 - MIR SINE MIR 0 262 31 1735 95 137 0 chr11 16927918 16928180 -131855292 + AluSq SINE Alu 1 298 -5 811 245 139 14 chr11 16928497 16928705 -131854767 - MIR SINE MIR -15 247 14 288 0 0 0 chr11 16930058 16930090 -131853382 + (CA)n Simple_repeat Simple_repeat 2 33 0 303 71 0 0 chr11 16930091 16930133 -131853339 + (GA)n Simple_repeat Simple_repeat 1 42 0 240 342 35 0 chr11 16930202 16930316 -131853156 + L2 LINE L2 2943 3060 -212 533 316 46 15 chr11 16930448 16930644 -131852828 + L3 LINE CR1 1316 1517 -60 1068 153 148 10 chr11 16931163 16931359 -131852113 + AluJo SINE Alu 85 307 -5 196 313 0 0 chr11 16931388 16931436 -131852036 - L2 LINE L2 -12 3260 3213 197 179 26 0 chr11 16931487 16931526 -131851946 - L2 LINE L2 -577 2737 2698 21 95 0 0 chr11 16931550 16931613 -131851859 + AT_rich Low_complexity Low_complexity 1 63 0 1153 214 179 47 chr11 16931617 16932125 -131851347 + L2 LINE L2 2690 3313 0 552 298 0 0 chr11 16932126 16932257 -131851215 - MIR SINE MIR -86 176 46 276 300 71 57 chr11 16932367 16932507 -131850965 + L2 LINE L2 3126 3267 -5 225 143 0 0 chr11 16932623 16932658 -131850814 + U2 snRNA snRNA 2 36 -152 297 268 98 9 chr11 16933081 16933193 -131850279 + L2 LINE L2 3191 3312 -1 444 224 40 40 chr11 16933905 16934030 -131849442 + MIR SINE MIR 16 140 -68 245 246 53 0 chr11 16934834 16934891 -131848581 + MIR SINE MIR 93 152 -56 210 257 88 74 chr11 16934903 16935051 -131848421 + L2 LINE L2 2910 3059 -213 376 250 27 54 chr11 16935400 16935512 -131847960 - MIR SINE MIR -145 117 9 267 79 0 0 chr11 16935683 16935721 -131847751 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2307 117 7 3 chr11 16935721 16936029 -131847443 - AluSq SINE Alu -4 309 1 972 254 208 12 chr11 16936029 16936438 -131847034 - L3 LINE CR1 -108 1469 981 630 293 29 34 chr11 16936531 16936739 -131846733 + MIR SINE MIR 13 219 -43 223 224 45 75 chr11 16936737 16936804 -131846668 - MIR SINE MIR -152 110 46 * 363 285 152 26 chr11 16936871 16937022 -131846450 + L2 LINE L2 3101 3270 -2 207 88 0 0 chr11 16937451 16937485 -131845987 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 662 81 0 0 chr11 16937493 16937580 -131845892 + AluY SINE Alu 218 304 -7 1254 258 138 10 chr11 16938541 16939256 -131844216 - L2 LINE L2 -4 3309 2508 337 240 178 16 chr11 16939623 16939752 -131843720 + MIR SINE MIR 49 198 -64 2268 118 0 3 chr11 16939754 16940058 -131843414 + AluSx SINE Alu 1 303 -9 398 219 89 57 chr11 16940098 16940221 -131843251 + MIR SINE MIR 98 224 -38 234 264 140 83 chr11 16941924 16942238 -131841234 + L2 LINE L2 2886 3217 -55 * 404 172 232 0 chr11 16942222 16942321 -131841151 - L2 LINE L2 -19 3294 3173 * 703 246 134 22 chr11 16942317 16942549 -131840923 - MIR SINE MIR -3 259 2 321 258 0 0 chr11 16942590 16942656 -131840816 + L2 LINE L2 3202 3267 -5 365 284 52 9 chr11 16943377 16943493 -131839979 - MIR SINE MIR -10 252 132 2567 54 0 0 chr11 16943936 16944230 -131839242 + AluY SINE Alu 1 294 -17 766 197 81 73 chr11 16945222 16945469 -131838003 + MIR SINE MIR 12 255 -7 277 354 63 8 chr11 16946972 16947099 -131836373 - MIR SINE MIR -19 243 110 298 247 34 22 chr11 16947099 16947188 -131836284 - MER5A DNA MER1_type -3 186 97 2061 125 0 34 chr11 16947370 16947667 -131835805 - AluSx SINE Alu -13 299 13 590 184 88 41 chr11 16947994 16948141 -131835331 - MIR SINE MIR -99 163 10 255 374 134 0 chr11 16948415 16948586 -131834886 + L2 LINE L2 3079 3272 0 242 320 0 41 chr11 16948589 16948686 -131834786 - L3 LINE CR1 -89 1488 1396 956 209 0 11 chr11 16949540 16949717 -131833755 + FRAM SINE Alu 1 172 -4 318 303 26 92 chr11 16949762 16949914 -131833558 + MIR SINE MIR 24 165 -97 348 264 166 18 chr11 16950104 16950267 -131833205 - L1MC4 LINE L1 -66 7976 7790 2375 99 7 0 chr11 16950275 16950577 -131832895 - AluSp SINE Alu -9 304 1 669 200 132 77 chr11 16950763 16950983 -131832489 - MIR SINE MIR -11 251 20 2310 137 0 0 chr11 16951667 16951980 -131831492 - AluSq SINE Alu 0 313 1 213 344 0 0 chr11 16951983 16952044 -131831428 + MIR SINE MIR 83 143 -65 2247 113 0 7 chr11 16952535 16952835 -131830637 + AluSx SINE Alu 1 298 -14 1639 110 169 0 chr11 16953376 16953631 -131829841 + AluSq SINE Alu 1 298 -15 2224 117 3 0 chr11 16953634 16953933 -131829539 + AluSx SINE Alu 3 302 -10 504 186 41 21 chr11 16954472 16954617 -131828855 + MER45B DNA AcHobo 744 891 -149 1193 110 0 0 chr11 16954617 16954771 -131828701 - AluSp SINE Alu -20 293 140 639 165 25 108 chr11 16954798 16954862 -131828610 + MER45B DNA AcHobo 896 964 -617 1822 167 0 3 chr11 16954862 16955161 -131828311 - AluJb SINE Alu -14 298 1 639 165 25 108 chr11 16955161 16955173 -131828299 + MER45B DNA AcHobo 964 975 -606 538 92 0 0 chr11 16955173 16955249 -131828223 - MADE1 DNA Mariner -4 76 1 639 165 25 108 chr11 16955249 16955329 -131828143 + MER45B DNA AcHobo 975 1040 0 354 278 126 26 chr11 16956463 16956614 -131826858 + MIR SINE MIR 35 200 -62 318 315 85 8 chr11 16956659 16956789 -131826683 + MIR SINE MIR 122 261 -1 225 290 0 0 chr11 16956789 16956851 -131826621 + (TTA)n Simple_repeat Simple_repeat 3 64 0 1398 205 29 0 chr11 16956912 16957218 -131826254 - AluJo SINE Alu 0 314 1 2070 122 6 10 chr11 16957396 16957707 -131825765 + AluSx SINE Alu 1 310 -2 872 185 0 0 chr11 16957756 16957902 -131825570 + FRAM SINE Alu 1 146 -30 1972 283 209 18 chr11 16958564 16960025 -131823447 + L2 LINE L2 1561 3293 -20 314 208 208 16 chr11 16960347 16960472 -131823000 - L2 LINE L2 0 3272 3124 29 47 0 0 chr11 16961375 16961418 -131822054 + GC_rich Low_complexity Low_complexity 1 43 0 202 95 24 48 chr11 16961546 16961588 -131821884 + (CCCCCG)n Simple_repeat Simple_repeat 6 46 0 366 74 0 0 chr11 16961727 16961781 -131821691 + (CGGGGG)n Simple_repeat Simple_repeat 2 55 0 34 42 0 0 chr11 16961987 16962035 -131821437 + GC_rich Low_complexity Low_complexity 1 48 0 347 258 105 24 chr11 16962197 16962321 -131821151 + MIR SINE MIR 117 250 -12 486 284 151 28 chr11 16962547 16962832 -131820640 + L2 LINE L2 2987 3306 -7 1993 90 10 7 chr11 16962837 16963125 -131820347 + AluSq SINE Alu 5 293 -20 369 0 0 0 chr11 16963171 16963212 -131820260 + (CA)n Simple_repeat Simple_repeat 1 41 0 1505 247 74 45 chr11 16963675 16963840 -131819632 + L1MC4a LINE L1 5319 5478 -2330 2162 120 0 0 chr11 16963840 16964141 -131819331 + AluSx SINE Alu 1 301 -11 1505 247 74 45 chr11 16964141 16964512 -131818960 + L1MC4a LINE L1 5478 5877 -1931 1583 188 18 0 chr11 16964512 16964809 -131818663 + AluJo SINE Alu 1 302 0 1505 247 74 45 chr11 16964809 16964850 -131818622 + L1MC4a LINE L1 5877 5915 -1893 3007 188 88 36 chr11 16965129 16965262 -131818210 + L1MD2 LINE L1 5457 5582 -777 2041 136 0 0 chr11 16965262 16965556 -131817916 - AluSx SINE Alu -18 294 1 3007 188 88 36 chr11 16965556 16966036 -131817436 + L1MD2 LINE L1 5582 6130 -229 1718 141 4 11 chr11 16966036 16966346 -131817126 - AluSx SINE Alu 0 314 7 3007 188 88 36 chr11 16966346 16966586 -131816886 + L1MD2 LINE L1 6130 6356 -3 365 261 18 27 chr11 16967024 16967135 -131816337 + MIR SINE MIR 1 110 -152 23 0 0 0 chr11 16967433 16967456 -131816016 + AT_rich Low_complexity Low_complexity 1 23 0 1543 187 11 0 chr11 16967457 16967735 -131815737 - AluJb SINE Alu -24 288 8 24 24 0 24 chr11 16967742 16967765 -131815707 + AT_rich Low_complexity Low_complexity 1 24 -17 2200 90 3 0 chr11 16967765 16968054 -131815418 - AluSp SINE Alu -23 290 1 24 24 0 24 chr11 16968054 16968072 -131815400 + AT_rich Low_complexity Low_complexity 24 41 0 2684 185 36 38 chr11 16968075 16968606 -131814866 + LTR26 LTR ERV1 52 581 -22 818 204 117 128 chr11 16968913 16969241 -131814231 - MLT2C2 LTR ERVL -8 456 133 1683 154 3 31 chr11 16969241 16969534 -131813938 + AluJb SINE Alu 5 289 -23 818 204 117 128 chr11 16969534 16969666 -131813806 - MLT2C2 LTR ERVL -331 133 1 2271 242 38 35 chr11 16970001 16970662 -131812810 - L1MC4 LINE L1 -142 7900 7238 1893 212 103 64 chr11 16970665 16971200 -131812272 - L1MC4 LINE L1 -812 6996 6442 315 0 0 0 chr11 16971552 16971587 -131811885 + (CA)n Simple_repeat Simple_repeat 2 36 0 1689 166 0 35 chr11 16971674 16971993 -131811479 - AluJo SINE Alu -4 308 1 345 47 0 0 chr11 16972380 16972423 -131811049 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 248 217 50 0 chr11 16972653 16972713 -131810759 + MIR SINE MIR 130 192 -70 2015 109 24 3 chr11 16972974 16973268 -131810204 + AluSp SINE Alu 1 300 -13 1877 141 17 0 chr11 16973503 16973854 -131809618 - AluSx SINE Alu 0 356 1 199 325 12 12 chr11 16973880 16973963 -131809509 - MIR SINE MIR -96 112 30 201 233 23 0 chr11 16974431 16974474 -131808998 - MIR SINE MIR -64 144 101 1125 176 19 19 chr11 16974519 16974735 -131808737 + AluJb SINE Alu 73 288 -24 2287 77 0 0 chr11 16974741 16975038 -131808434 - AluY SINE Alu -14 297 1 24 53 0 0 chr11 16975038 16975076 -131808396 + AT_rich Low_complexity Low_complexity 1 38 0 46 83 0 0 chr11 16975087 16975196 -131808276 + AT_rich Low_complexity Low_complexity 1 109 0 1056 182 0 5 chr11 16975347 16975534 -131807938 - AluJo SINE Alu -110 202 17 1930 133 0 0 chr11 16975554 16975856 -131807616 + AluSx SINE Alu 5 306 0 2054 103 17 0 chr11 16975866 16976157 -131807315 + AluSx SINE Alu 1 296 -16 459 266 108 72 chr11 16976762 16976984 -131806488 - L2 LINE L2 -3 3269 3040 1591 231 100 45 chr11 16977045 16977146 -131806326 - MLT1G LTR MaLR 0 590 496 856 149 0 8 chr11 16977146 16977280 -131806192 + FLAM_C SINE Alu 1 133 0 1591 231 100 45 chr11 16977280 16977710 -131805762 - MLT1G LTR MaLR -94 496 30 1205 177 139 4 chr11 16977739 16978005 -131805467 - AluJo SINE Alu -10 302 1 2065 121 0 0 chr11 16978189 16978486 -131804986 - AluSx SINE Alu -1 311 15 444 252 46 8 chr11 16978505 16978636 -131804836 + MIR SINE MIR 63 198 -64 1319 192 69 10 chr11 16978638 16978929 -131804543 - MER44D DNA MER2_type -2 607 30 2127 113 0 0 chr11 16978968 16979261 -131804211 + AluSx SINE Alu 1 293 -19 1526 218 52 0 chr11 16979290 16979616 -131803856 - MER63 DNA MER1_type 0 1061 719 978 208 59 72 chr11 16979616 16979991 -131803481 + HAL1 LINE L1 1208 1577 -930 2293 75 10 3 chr11 16979991 16980296 -131803176 + AluSq SINE Alu 1 307 -6 620 232 53 16 chr11 16980307 16980497 -131802975 - L2 LINE L2 -983 2331 2135 369 243 92 53 chr11 16980497 16980649 -131802823 + HAL1 LINE L1 1679 1836 -671 374 267 140 20 chr11 16980664 16980964 -131802508 + HAL1 LINE L1 1864 2199 -308 2239 151 30 10 chr11 16980994 16981392 -131802080 + L1MB5 LINE L1 5625 6030 -144 579 129 40 20 chr11 16981393 16981494 -131801978 - FLAM_C SINE Alu -15 128 26 813 152 21 7 chr11 16981503 16981648 -131801824 + L1MB5 LINE L1 6022 6168 -6 309 226 67 168 chr11 16981655 16981683 -131801789 + HAL1 LINE L1 2321 2350 -157 2205 97 0 0 chr11 16981683 16981973 -131801499 + AluSg SINE Alu 1 290 -20 309 226 67 168 chr11 16981973 16982102 -131801370 + HAL1 LINE L1 2350 2455 -52 1678 165 7 0 chr11 16982102 16982375 -131801097 + AluSx SINE Alu 1 275 -37 309 226 67 168 chr11 16982375 16982424 -131801048 + HAL1 LINE L1 2455 2507 0 1541 114 12 24 chr11 16982437 16982691 -131800781 + AluSq SINE Alu 56 306 -7 2138 80 0 0 chr11 16982693 16982967 -131800505 + AluY SINE Alu 1 274 -37 1562 122 173 0 chr11 16983143 16983397 -131800075 - AluSx SINE Alu -4 298 1 575 51 26 0 chr11 16983783 16983861 -131799611 - MADE1 DNA Mariner 0 80 1 430 121 33 88 chr11 16984481 16984572 -131798900 - U14 snRNA snRNA -1 86 1 508 191 145 40 chr11 16984686 16984838 -131798634 + MER58A DNA MER1_type 30 197 -27 410 133 33 78 chr11 16985606 16985696 -131797776 - U14 snRNA snRNA -1 86 1 210 260 96 0 chr11 16985738 16985811 -131797661 - MIR SINE MIR -4 258 179 180 239 43 60 chr11 16985789 16985906 -131797566 + L2 LINE L2 3110 3224 -89 * 1999 89 7 14 chr11 16985944 16986226 -131797246 + AluSx SINE Alu 12 291 -21 1250 82 12 0 chr11 16986227 16986398 -131797074 + AluSq SINE Alu 127 299 -14 688 163 49 0 chr11 16986398 16986521 -131796951 - FRAM SINE Alu -30 146 18 227 283 117 0 chr11 16986561 16986621 -131796851 + L2 LINE L2 3242 3308 -5 563 281 16 47 chr11 16986692 16986884 -131796588 + MIR SINE MIR 44 229 -33 2256 68 7 0 chr11 16988298 16988593 -131794879 - AluSp SINE Alu -16 297 1 1075 164 31 9 chr11 16988613 16988839 -131794633 + AluJb SINE Alu 82 312 0 2415 38 0 3 chr11 16989067 16989358 -131794114 + AluY SINE Alu 1 290 -21 656 268 227 51 chr11 16989550 16990400 -131793072 + L2 LINE L2 2293 3312 -1 2176 81 10 3 chr11 16990550 16990848 -131792624 - AluSx SINE Alu -12 300 1 872 159 114 57 chr11 16991139 16991384 -131792088 - L1MB7 LINE L1 -16 6168 5910 2009 78 4 0 chr11 16991385 16991643 -131791829 + AluSg SINE Alu 1 259 -51 229 173 0 120 chr11 16991647 16991722 -131791750 - AluSq/x SINE Alu -152 151 86 973 189 45 5 chr11 16991722 16991923 -131791549 - AluJo SINE Alu -92 220 12 542 122 0 0 chr11 16991940 16992022 -131791450 - L1MB7 LINE L1 -311 5867 5786 270 0 0 0 chr11 16992023 16992053 -131791419 + (T)n Simple_repeat Simple_repeat 1 30 0 1568 74 5 0 chr11 16992060 16992262 -131791210 - AluSp SINE Alu -110 203 1 811 127 63 21 chr11 16992271 16992413 -131791059 - AluSx SINE Alu -11 301 154 317 231 58 29 chr11 16992415 16992519 -131790953 - L1MB7 LINE L1 -54 6130 6024 1090 104 0 37 chr11 16992522 16992686 -131790786 - AluSx SINE Alu -154 158 1 1160 156 55 42 chr11 16992686 16992993 -131790479 - L1MB7 LINE L1 -815 5331 5021 826 192 12 6 chr11 16992994 16993166 -131790306 - FRAM SINE Alu 0 40 1 594 167 45 8 chr11 16993172 16993304 -131790168 - L1MB7 LINE L1 -1120 5026 4890 1797 150 7 29 chr11 16993443 16993750 -131789722 + AluJb SINE Alu 1 300 -12 314 235 31 41 chr11 16993805 16993903 -131789569 + L1MC5 LINE L1 7805 7901 -60 23 98 0 0 chr11 16994241 16994282 -131789190 + AT_rich Low_complexity Low_complexity 1 41 0 532 131 12 0 chr11 16994452 16994536 -131788936 - AluSg1 SINE Alu -223 86 2 2324 67 7 0 chr11 16994570 16994867 -131788605 + AluY SINE Alu 1 299 -12 314 235 31 41 chr11 16994922 16995020 -131788452 + L1MC5 LINE L1 7805 7901 -60 759 84 65 0 chr11 16995405 16995512 -131787960 + AluSx SINE Alu 2 115 -197 1822 201 86 19 chr11 16995536 16995965 -131787507 + LTR2B LTR ERV1 32 489 -1 1251 107 0 6 chr11 16995965 16996143 -131787329 + AluSx SINE Alu 116 292 -18 2265 75 24 0 chr11 16998009 16998302 -131785170 - AluSq SINE Alu -13 300 1 237 108 0 0 chr11 16999411 16999448 -131784024 + (TG)n Simple_repeat Simple_repeat 1 37 0 2027 122 7 0 chr11 16999947 17000243 -131783229 + AluSp SINE Alu 1 298 -15 329 330 20 10 chr11 17000300 17000400 -131783072 + L3 LINE CR1 1446 1546 -31 1847 141 0 30 chr11 17000503 17000807 -131782665 - AluJb SINE Alu -17 295 1 1436 109 23 5 chr11 17000834 17001054 -131782418 + L1PA10 LINE L1 5944 6167 -1 1628 122 79 36 chr11 17002158 17002437 -131781035 + AluSx SINE Alu 1 291 -21 549 100 0 0 chr11 17002554 17002634 -131780838 - MADE1 DNA Mariner 0 80 1 2257 62 10 3 chr11 17003034 17003324 -131780148 - AluY SINE Alu -19 292 1 1647 157 3 33 chr11 17003399 17003698 -131779774 - AluJb SINE Alu -21 291 2 204 372 21 0 chr11 17003828 17003922 -131779550 - L2 LINE L2 0 3272 3177 2032 108 11 0 chr11 17004202 17004488 -131778984 + AluSx SINE Alu 1 289 -23 1541 189 3 57 chr11 17004727 17005044 -131778428 + AluJb SINE Alu 1 300 -12 2234 74 0 51 chr11 17005054 17005350 -131778122 + AluY SINE Alu 1 281 -30 204 79 26 0 chr11 17005350 17005388 -131778084 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1631 137 22 32 chr11 17005393 17005670 -131777802 + AluSx SINE Alu 3 276 -36 327 78 0 0 chr11 17005680 17005731 -131777741 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 2222 115 3 0 chr11 17005802 17006097 -131777375 - AluSx SINE Alu -16 296 1 2131 114 6 16 chr11 17007391 17007706 -131775766 + AluSx SINE Alu 1 312 0 1426 211 47 19 chr11 17007956 17008317 -131775155 + MLT1A2 LTR MaLR 3 373 -1 2275 97 3 0 chr11 17008664 17008954 -131774518 - AluSp SINE Alu -22 291 1 1138 130 6 12 chr11 17009155 17009324 -131774148 + AluSg/x SINE Alu 132 299 -13 21 0 0 0 chr11 17009418 17009439 -131774033 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 17010003 17010024 -131773448 + GC_rich Low_complexity Low_complexity 1 21 0 1763 120 0 32 chr11 17010033 17010283 -131773189 - AluSx SINE Alu -70 242 1 1750 167 13 10 chr11 17010293 17010592 -131772880 - L1PB4 LINE L1 -2 6154 5855 667 231 182 11 chr11 17010636 17010900 -131772572 - L1ME3A LINE L1 0 6170 5862 2568 68 0 0 chr11 17011353 17011664 -131771808 - AluY SINE Alu 0 311 1 2513 42 0 3 chr11 17011916 17012205 -131771267 + AluY SINE Alu 1 288 -23 190 0 67 0 chr11 17012214 17012244 -131771228 + (CAA)n Simple_repeat Simple_repeat 2 33 0 587 247 109 10 chr11 17013314 17013362 -131770110 - MIR SINE MIR -1 261 219 216 97 0 0 chr11 17013362 17013393 -131770079 + (TG)n Simple_repeat Simple_repeat 2 32 0 587 247 109 10 chr11 17013393 17013569 -131769903 - MIR SINE MIR -43 219 19 393 231 12 162 chr11 17014049 17014204 -131769268 - MIR SINE MIR -41 221 115 2524 73 0 0 chr11 17014204 17014507 -131768965 + AluY SINE Alu 1 303 -8 393 231 12 162 chr11 17014507 17014598 -131768874 - MIR SINE MIR -147 115 12 2909 58 3 6 chr11 17015145 17015507 -131767965 - L1PA8 LINE L1 -8 6164 5804 2274 106 0 0 chr11 17015589 17015881 -131767591 + AluSx SINE Alu 3 294 -18 1880 171 7 3 chr11 17015889 17016194 -131767278 + AluSx SINE Alu 1 306 -6 1122 132 0 66 chr11 17016317 17016499 -131766973 - AluSq SINE Alu -141 172 3 2456 80 0 0 chr11 17016792 17017093 -131766379 + AluY SINE Alu 2 302 -9 26 64 0 0 chr11 17017403 17017450 -131766022 + AT_rich Low_complexity Low_complexity 1 47 0 2051 136 3 3 chr11 17017629 17017931 -131765541 - AluSx SINE Alu -10 302 1 234 121 0 0 chr11 17017932 17017965 -131765507 - U7 snRNA snRNA -29 34 2 199 283 70 91 chr11 17017967 17018081 -131765391 + L3 LINE CR1 741 851 -726 1381 190 9 58 chr11 17018081 17018407 -131765065 + AluJo SINE Alu 1 310 -2 199 283 70 91 chr11 17018407 17018479 -131764993 + L3 LINE CR1 851 923 -654 524 294 15 44 chr11 17018676 17018880 -131764592 + L3 LINE CR1 1278 1475 -102 1340 199 109 0 chr11 17019337 17019593 -131763879 - AluJo SINE Alu -26 286 3 2023 138 0 7 chr11 17019711 17020002 -131763470 - AluSx SINE Alu -13 299 11 1059 177 64 0 chr11 17020026 17020229 -131763243 + L1MD1 LINE L1 6027 6242 0 553 272 136 31 chr11 17020564 17020821 -131762651 - AluJo SINE Alu -16 286 3 2048 146 0 7 chr11 17020939 17021240 -131762232 - AluSx SINE Alu -13 299 1 1070 106 0 7 chr11 17021619 17021761 -131761711 + AluSx SINE Alu 23 163 -149 180 237 0 0 chr11 17021793 17021831 -131761641 + MIR SINE MIR 90 127 -135 324 87 0 0 chr11 17021831 17021877 -131761595 + L1MB7 LINE L1 6111 6156 -28 2009 120 0 0 chr11 17021877 17022185 -131761287 - AluSx SINE Alu 0 318 11 1059 177 64 0 chr11 17022209 17022412 -131761060 + L1MD1 LINE L1 6027 6242 0 2277 114 3 0 chr11 17022582 17022889 -131760583 + AluSq SINE Alu 1 308 -5 2203 99 0 3 chr11 17023157 17023439 -131760033 + AluSx SINE Alu 1 281 -31 36 0 0 0 chr11 17023439 17023475 -131759997 + AT_rich Low_complexity Low_complexity 1 36 0 1102 171 0 0 chr11 17023765 17023940 -131759532 - FRAM SINE Alu -4 172 1 1365 106 0 0 chr11 17023989 17024169 -131759303 - AluSq SINE Alu -3 310 131 1936 98 0 0 chr11 17024541 17024787 -131758685 + AluSx SINE Alu 55 300 -12 2210 107 7 0 chr11 17024787 17025119 -131758353 + AluSg SINE Alu 1 334 0 503 289 116 34 chr11 17025623 17026011 -131757461 + L1MC/D LINE L1 5318 5737 -2071 896 217 100 23 chr11 17026036 17026255 -131757217 + L1MB5 LINE L1 4538 4788 -1358 1706 185 10 22 chr11 17026255 17026569 -131756903 + AluJb SINE Alu 1 310 -2 896 217 100 23 chr11 17026569 17026649 -131756823 + L1MB5 LINE L1 4788 4860 -1286 739 112 0 0 chr11 17026667 17026765 -131756707 - U6 snRNA snRNA -9 98 1 3602 178 84 20 chr11 17026767 17027593 -131755879 + L1MB5 LINE L1 4846 5768 -406 2548 61 0 0 chr11 17027593 17027890 -131755582 - AluY SINE Alu -14 297 1 3602 178 84 20 chr11 17027890 17028223 -131755249 + L1MB5 LINE L1 5768 6078 -96 2273 86 3 32 chr11 17028710 17029025 -131754447 - AluY SINE Alu -5 306 1 581 172 47 8 chr11 17029164 17029292 -131754180 + L1M4 LINE L1 4890 5022 -1124 737 217 13 7 chr11 17029292 17029444 -131754028 + FRAM SINE Alu 1 146 -30 541 240 89 39 chr11 17029525 17029783 -131753689 + L1M4 LINE L1 5061 5331 -815 2303 81 10 3 chr11 17029783 17030081 -131753391 + AluSx SINE Alu 1 300 -12 221 282 39 13 chr11 17030233 17030311 -131753161 - L2 LINE L2 -1 3312 3233 21 0 0 0 chr11 17031039 17031060 -131752412 + GC_rich Low_complexity Low_complexity 1 21 0 202 231 0 31 chr11 17031131 17031196 -131752276 + (CGGGG)n Simple_repeat Simple_repeat 5 67 0 424 202 13 48 chr11 17031308 17031721 -131751751 + A-rich Low_complexity Low_complexity 1 398 0 256 197 34 51 chr11 17031839 17032017 -131751455 + (CACAA)n Simple_repeat Simple_repeat 1 175 0 555 62 0 0 chr11 17032202 17032282 -131751190 + (A)n Simple_repeat Simple_repeat 1 80 0 42 57 0 0 chr11 17032300 17032370 -131751102 + AT_rich Low_complexity Low_complexity 1 70 0 2100 131 10 0 chr11 17032387 17032693 -131750779 + AluSx SINE Alu 1 309 -3 1070 212 28 5 chr11 17032693 17032905 -131750567 + AluJo SINE Alu 72 288 -24 45233 36 1 2 chr11 17032974 17039138 -131744334 - L1PA2 LINE L1 0 6155 1 1391 217 54 50 chr11 17039138 17039543 -131743929 + L1MC4 LINE L1 7099 7508 -534 2251 129 0 0 chr11 17039543 17039852 -131743620 - AluSx SINE Alu -3 309 1 1391 217 54 50 chr11 17039852 17039889 -131743583 + L1MC4 LINE L1 7508 7543 -499 368 200 35 0 chr11 17039898 17040013 -131743459 + (TA)n Simple_repeat Simple_repeat 1 119 0 2390 98 0 0 chr11 17040017 17040313 -131743159 + AluSg SINE Alu 1 296 -14 21575 138 28 20 chr11 17040328 17042825 -131740647 + L1M1 LINE L1 18 2493 -5072 2312 77 23 3 chr11 17042825 17043124 -131740348 + AluY SINE Alu 1 305 -6 21575 138 28 20 chr11 17043124 17043184 -131740288 + L1M1 LINE L1 2493 2551 -5014 1937 110 58 27 chr11 17043184 17043476 -131739996 + AluSg SINE Alu 1 301 -9 21575 138 28 20 chr11 17043476 17044043 -131739429 + L1M1 LINE L1 2551 3179 -4386 2296 81 16 23 chr11 17044043 17044353 -131739119 + AluSp SINE Alu 1 308 -5 21575 138 28 20 chr11 17044353 17044835 -131738637 + L1M1 LINE L1 3179 3656 -3909 1901 189 121 13 chr11 17044837 17045337 -131738135 - SATR1 Satellite Satellite 0 554 1 2451 164 98 17 chr11 17045364 17048648 -131734824 - SATR1 Satellite Satellite -393 3550 1 844 127 242 0 chr11 17048720 17048885 -131734587 - SATR1 Satellite Satellite -120 350 146 232 204 0 0 chr11 17048909 17048953 -131734519 - AluJ/monomer SINE Alu -259 44 1 3436 226 26 23 chr11 17048993 17049981 -131733491 + L1MB3 LINE L1 4818 5802 -381 1968 121 4 4 chr11 17049981 17050261 -131733211 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr11 17050263 17050290 -131733182 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3436 226 26 23 chr11 17050290 17050379 -131733093 + L1MB3 LINE L1 5802 5889 -294 2280 117 0 0 chr11 17050379 17050678 -131732794 + AluSx SINE Alu 3 301 -11 3436 226 26 23 chr11 17050678 17050931 -131732541 + L1MB3 LINE L1 5889 6156 -27 34 0 0 0 chr11 17050945 17050979 -131732493 + AT_rich Low_complexity Low_complexity 1 34 0 2339 95 0 3 chr11 17052373 17052669 -131730803 + AluSg SINE Alu 1 295 -15 190 327 44 26 chr11 17053046 17053159 -131730313 + L2 LINE L2 3158 3272 0 2216 94 0 10 chr11 17053221 17053518 -131729954 - AluSc SINE Alu -15 294 1 1300 56 0 0 chr11 17053545 17053706 -131729766 + L1PA5 LINE L1 5994 6154 0 23 0 0 0 chr11 17054042 17054065 -131729407 + AT_rich Low_complexity Low_complexity 1 23 0 6992 77 20 55 chr11 17054065 17056353 -131727119 - SVA Other Other -518 1386 57 570 15 0 0 chr11 17056353 17056420 -131727052 + (GGGAGA)n Simple_repeat Simple_repeat 1 67 0 2572 69 3 0 chr11 17057864 17058169 -131725303 + AluSp SINE Alu 1 306 -7 1260 215 219 25 chr11 17058187 17059146 -131724326 - SATR1 Satellite Satellite -2 1145 1 1397 188 276 28 chr11 17059177 17060274 -131723198 - SATR1 Satellite Satellite -1 1369 1 1016 238 190 42 chr11 17060311 17061161 -131722311 - SATR1 Satellite Satellite -4 975 1 1162 197 277 8 chr11 17061199 17062193 -131721279 - SATR1 Satellite Satellite -3 1260 1 1152 201 248 22 chr11 17062207 17063731 -131719741 - SATR1 Satellite Satellite -10 1868 1 11345 170 32 31 chr11 17063731 17063878 -131719594 + L1 LINE L1 2242 2387 -3759 2192 125 0 6 chr11 17063878 17064190 -131719282 + AluSx SINE Alu 3 312 0 11345 170 32 31 chr11 17064190 17064570 -131718902 + L1 LINE L1 2387 2765 -3381 2234 120 3 0 chr11 17064570 17064871 -131718601 + AluSx SINE Alu 1 302 -10 11345 170 32 31 chr11 17064871 17065396 -131718076 + L1 LINE L1 2765 3288 -2858 2058 158 0 0 chr11 17065396 17065699 -131717773 + AluSx SINE Alu 1 303 -9 11345 170 32 31 chr11 17065699 17067000 -131716472 + L1 LINE L1 3288 4599 -1547 339 221 173 0 chr11 17067038 17067142 -131716330 - MER5A DNA MER1_type 0 189 68 1152 114 0 13 chr11 17067142 17067325 -131716147 - AluJb SINE Alu 0 312 134 2269 103 0 3 chr11 17067484 17067786 -131715686 - AluSg SINE Alu -9 301 1 25 31 0 0 chr11 17067879 17067911 -131715561 + AT_rich Low_complexity Low_complexity 1 32 0 191 296 0 0 chr11 17067944 17067988 -131715484 + L2 LINE L2 3210 3253 -19 399 273 45 0 chr11 17068085 17068195 -131715277 - L2 LINE L2 -10 3303 3189 2231 127 0 16 chr11 17068748 17069063 -131714409 - AluSx SINE Alu -2 310 1 310 298 149 12 chr11 17069223 17069384 -131714088 + MIR3 SINE MIR 20 202 -6 591 126 0 0 chr11 17069498 17069593 -131713879 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 22 0 0 0 chr11 17069624 17069646 -131713826 + AT_rich Low_complexity Low_complexity 1 22 0 2158 117 0 14 chr11 17069648 17069939 -131713533 + AluSx SINE Alu 1 287 -25 1178 144 0 0 chr11 17120657 17120830 -131662642 - AluSx SINE Alu -129 183 11 1000 177 64 0 chr11 17120854 17121057 -131662415 + L1MD1 LINE L1 6027 6242 0 2276 114 3 0 chr11 17121227 17121534 -131661938 + AluSq SINE Alu 1 308 -5 2274 109 0 3 chr11 17121803 17122114 -131661358 + AluSx SINE Alu 1 310 -2 1110 171 0 0 chr11 17122411 17122586 -131660886 - FRAM SINE Alu -4 172 1 1341 111 0 0 chr11 17122635 17122815 -131660657 - AluSq SINE Alu -3 310 131 1886 102 0 0 chr11 17123187 17123433 -131660039 + AluSx SINE Alu 55 300 -12 2192 107 7 0 chr11 17123433 17123761 -131659711 + AluSg SINE Alu 1 330 0 410 263 128 36 chr11 17124326 17124630 -131658842 + L1ME LINE L1 5385 5716 -405 803 218 89 21 chr11 17124698 17124897 -131658575 + L1MB5 LINE L1 4562 4787 -1359 1722 185 10 22 chr11 17124897 17125211 -131658261 + AluJb SINE Alu 1 310 -2 803 218 89 21 chr11 17125211 17125291 -131658181 + L1MB5 LINE L1 4787 4860 -1286 693 112 0 0 chr11 17125309 17125407 -131658065 - U6 snRNA snRNA -9 98 1 3284 179 84 20 chr11 17125409 17126235 -131657237 + L1MB5 LINE L1 4846 5768 -406 2501 61 0 0 chr11 17126235 17126532 -131656940 - AluY SINE Alu -14 297 1 3284 179 84 20 chr11 17126532 17126865 -131656607 + L1MB5 LINE L1 5768 6078 -96 2613 49 3 0 chr11 17127352 17127657 -131655815 - AluY SINE Alu -5 306 1 1896 163 3 7 chr11 17127711 17128017 -131655455 - AluJb SINE Alu -7 305 1 223 188 0 21 chr11 17129861 17129909 -131653563 - L2 LINE L2 -4 3309 3263 222 91 0 0 chr11 17130135 17130168 -131653304 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 247 221 105 12 chr11 17130326 17130412 -131653060 - L1MC4a LINE L1 -1846 5962 5869 1292 86 0 0 chr11 17130448 17130610 -131652862 - AluSg/x SINE Alu -6 304 143 354 173 14 14 chr11 17130611 17130692 -131652780 - Alu SINE Alu -248 51 1 413 289 120 29 chr11 17130701 17130749 -131652723 - L1MC4a LINE L1 -2020 5788 5746 1764 180 3 0 chr11 17130749 17131061 -131652411 - AluJo SINE Alu 0 313 1 413 289 120 29 chr11 17131061 17131461 -131652011 - L1MC4a LINE L1 -2062 5746 5298 24 32 0 0 chr11 17131605 17131636 -131651836 + AT_rich Low_complexity Low_complexity 1 31 0 1574 175 7 41 chr11 17132893 17133204 -131650268 - AluJb SINE Alu 0 301 1 717 229 16 27 chr11 17133236 17133424 -131650048 - MER58A DNA MER1_type -1 223 38 455 151 14 0 chr11 17133704 17133777 -131649695 - FRAM SINE Alu -36 140 67 608 198 71 52 chr11 17133833 17134101 -131649371 - L1MC5 LINE L1 -160 7801 7529 493 78 0 0 chr11 17134103 17134167 -131649305 - Alu SINE Alu -14 296 233 661 201 138 17 chr11 17134256 17134430 -131649042 + MER58A DNA MER1_type 30 224 0 641 188 87 46 chr11 17134437 17134655 -131648817 - L1MC5 LINE L1 -472 7489 7263 311 170 0 110 chr11 17134847 17134869 -131648603 - L1MC5 LINE L1 -741 7220 7197 1215 168 53 0 chr11 17134869 17135077 -131648395 + MER20 DNA MER1_type 1 219 0 311 170 0 110 chr11 17135077 17135154 -131648318 - L1MC5 LINE L1 -764 7197 7132 1785 112 64 19 chr11 17135168 17135435 -131648037 - AluSg SINE Alu -21 289 11 2120 147 3 0 chr11 17135489 17135796 -131647676 + AluSx SINE Alu 2 309 -3 278 265 49 0 chr11 17135797 17135899 -131647573 - L1MC5 LINE L1 -852 7109 7003 601 132 23 62 chr11 17135913 17136042 -131647430 + AluJb SINE Alu 2 125 -187 21 0 0 0 chr11 17136609 17136630 -131646842 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr11 17136920 17136953 -131646519 + AT_rich Low_complexity Low_complexity 1 33 0 2267 117 0 0 chr11 17136956 17137254 -131646218 - AluSx SINE Alu -14 298 1 852 249 36 12 chr11 17137554 17137807 -131645665 + MIR SINE MIR 3 261 -1 1357 167 4 17 chr11 17137951 17138185 -131645287 - AluSx SINE Alu -81 231 1 2172 93 21 3 chr11 17139237 17139528 -131643944 - AluSq SINE Alu -12 301 6 24 67 0 0 chr11 17139598 17139643 -131643829 + AT_rich Low_complexity Low_complexity 1 45 0 223 154 0 26 chr11 17139821 17139860 -131643612 + CT-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 17140035 17140063 -131643409 + AT_rich Low_complexity Low_complexity 1 28 0 2401 105 0 6 chr11 17140169 17140483 -131642989 + AluSx SINE Alu 1 312 0 2287 98 0 3 chr11 17140551 17140848 -131642624 + AluSq SINE Alu 1 296 -17 2501 70 0 0 chr11 17141066 17141366 -131642106 - AluY SINE Alu -11 300 1 2849 13 0 0 chr11 17141961 17142272 -131641200 - AluYb8 SINE Alu -7 311 1 245 240 0 0 chr11 17142877 17142927 -131640545 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 292 58 8 chr11 17142987 17143107 -131640365 + L2 LINE L2 3187 3312 -1 2166 130 0 0 chr11 17143289 17143582 -131639890 + AluSx SINE Alu 1 293 -19 1707 149 23 30 chr11 17143850 17144011 -131639461 - AluJo SINE Alu -12 300 140 2237 105 10 0 chr11 17144011 17144305 -131639167 - AluSp SINE Alu -16 297 1 1707 149 23 30 chr11 17144305 17144445 -131639027 - AluJo SINE Alu -172 140 1 315 0 0 0 chr11 17145322 17145357 -131638115 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr11 17146265 17146293 -131637179 + AT_rich Low_complexity Low_complexity 1 28 0 2339 81 20 0 chr11 17147062 17147357 -131636115 - AluSx SINE Alu -11 301 1 457 251 5 82 chr11 17147372 17147567 -131635905 + LTR41 LTR ERVL 2 181 -592 1139 189 9 40 chr11 17148276 17148504 -131634968 - MER58A DNA MER1_type -3 221 1 2308 80 0 17 chr11 17148560 17148860 -131634612 - AluSq SINE Alu -18 295 1 2049 126 14 0 chr11 17148881 17149167 -131634305 - AluSx SINE Alu -18 294 5 713 199 0 22 chr11 17149781 17149917 -131633555 + FLAM_A SINE Alu 1 133 0 1958 222 39 16 chr11 17149965 17150482 -131632990 + L1MB8 LINE L1 5648 6176 -2 459 333 185 4 chr11 17150493 17150848 -131632624 - L2 LINE L2 -214 3099 2691 1102 153 38 0 chr11 17150914 17151097 -131632375 - AluSg/x SINE Alu -1 309 120 784 207 52 17 chr11 17151103 17151382 -131632090 - L1MD3 LINE L1 -8 7987 7488 1829 261 126 36 chr11 17151383 17151633 -131631839 - L2 LINE L2 -632 2682 2456 549 149 44 18 chr11 17151633 17151747 -131631725 + L1MC1 LINE L1 6217 6333 0 1829 261 126 36 chr11 17151747 17152181 -131631291 - L2 LINE L2 -858 2456 1937 424 191 0 5 chr11 17152185 17152365 -131631107 + AluJo SINE Alu 5 279 -33 219 36 0 0 chr11 17152365 17152393 -131631079 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 803 235 86 8 chr11 17152397 17152631 -131630841 - L2 LINE L2 -1374 1940 1689 468 281 231 46 chr11 17152635 17153137 -131630335 + L2 LINE L2 2158 2752 -562 489 217 19 0 chr11 17153141 17153247 -131630225 - MER58B DNA MER1_type 0 341 234 2105 142 7 0 chr11 17153303 17153612 -131629860 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 17153630 17153651 -131629821 + AT_rich Low_complexity Low_complexity 1 21 0 282 350 124 62 chr11 17153844 17154135 -131629337 + L2 LINE L2 2963 3271 -1 2191 125 3 3 chr11 17154259 17154570 -131628902 + AluSx SINE Alu 1 311 -1 2229 74 16 3 chr11 17154577 17154887 -131628585 + THE1C-int LTR MaLR 1263 1576 -4 1553 142 86 10 chr11 17154891 17155194 -131628278 + THE1C LTR MaLR 1 326 -49 1857 163 0 26 chr11 17156082 17156388 -131627084 + AluSx SINE Alu 5 302 -10 2104 97 38 0 chr11 17157583 17157871 -131625601 + AluSp SINE Alu 1 299 -14 635 106 0 92 chr11 17158509 17158650 -131624822 - Charlie5 DNA MER1_type 0 2624 2497 1228 140 36 9 chr11 17158650 17158871 -131624601 - MER2 DNA MER2_type 0 345 119 236 79 26 0 chr11 17158871 17158909 -131624563 + L1MA2 LINE L1 6225 6263 -41 308 97 0 32 chr11 17158928 17158990 -131624482 + L1MA3 LINE L1 6246 6305 0 708 181 14 0 chr11 17158996 17159134 -131624338 - MER2 DNA MER2_type -190 155 16 499 159 0 0 chr11 17159297 17159385 -131624087 + AluS SINE Alu 221 308 -4 22 56 0 0 chr11 17159655 17159691 -131623781 + AT_rich Low_complexity Low_complexity 1 36 0 1029 249 5 5 chr11 17161189 17161410 -131622062 + MIR SINE MIR 21 241 -21 349 115 49 0 chr11 17161502 17161563 -131621909 + MSTB1 LTR MaLR 369 432 0 544 110 30 0 chr11 17161789 17161889 -131621583 + L1MB3 LINE L1 6081 6183 0 2156 131 0 13 chr11 17162796 17163101 -131620371 + AluSq SINE Alu 1 301 -12 347 235 25 0 chr11 17163208 17163289 -131620183 - MIR3 SINE MIR 0 208 126 195 42 0 0 chr11 17163723 17163747 -131619725 + (TG)n Simple_repeat Simple_repeat 2 25 0 203 173 27 53 chr11 17164342 17164417 -131619055 + GA-rich Low_complexity Low_complexity 5 77 0 275 308 75 50 chr11 17164586 17164706 -131618766 + MIR SINE MIR 21 143 -65 29 28 0 0 chr11 17165075 17165111 -131618361 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr11 17165384 17165427 -131618045 + AT_rich Low_complexity Low_complexity 1 43 0 1516 183 16 0 chr11 17166032 17166284 -131617188 - AluJb SINE Alu -11 301 46 649 252 0 0 chr11 17166505 17166632 -131616840 + FLAM_A SINE Alu 1 127 -6 2176 93 0 0 chr11 17166858 17167128 -131616344 + AluSx SINE Alu 35 304 -8 39 0 0 20 chr11 17167703 17167714 -131615758 + AT_rich Low_complexity Low_complexity 1 11 -38 2427 62 7 0 chr11 17167714 17168004 -131615468 + AluSp SINE Alu 1 292 -21 39 0 0 20 chr11 17168004 17168042 -131615430 + AT_rich Low_complexity Low_complexity 11 49 0 776 223 69 5 chr11 17168042 17168244 -131615228 - MIR SINE MIR -47 215 1 850 225 57 68 chr11 17169389 17169780 -131613692 - MLT2B1 LTR ERVL -67 397 1 1633 195 19 7 chr11 17170194 17170501 -131612971 + AluJb SINE Alu 1 311 -1 2244 108 0 16 chr11 17171700 17172015 -131611457 + AluSx SINE Alu 1 310 -2 2242 142 26 3 chr11 17172090 17172477 -131610995 + MER57A LTR ERV1 8 403 0 222 259 24 71 chr11 17172513 17172598 -131610874 - L3 LINE CR1 -196 1381 1301 2003 117 3 7 chr11 17172671 17172983 -131610489 + AluSx SINE Alu 1 311 0 1433 172 20 63 chr11 17173054 17173356 -131610116 - AluJo SINE Alu -19 293 5 213 274 0 20 chr11 17173628 17173679 -131609793 - MIR3 SINE MIR -48 160 111 252 303 92 9 chr11 17173684 17173793 -131609679 - L3 LINE CR1 -341 1236 1119 1144 200 0 10 chr11 17173820 17174025 -131609447 + AluJb SINE Alu 104 306 -6 265 302 16 0 chr11 17175059 17175122 -131608350 - L3 LINE CR1 -115 1462 1399 2286 80 10 10 chr11 17175151 17175453 -131608019 + AluSp SINE Alu 11 312 -1 508 179 179 34 chr11 17175549 17175784 -131607688 - L1MC5 LINE L1 -48 7913 7645 358 218 13 13 chr11 17175784 17175862 -131607610 + MIR SINE MIR 104 181 -81 1830 174 0 7 chr11 17176624 17176911 -131606561 - AluJb SINE Alu -21 291 7 2077 119 7 0 chr11 17176985 17177270 -131606202 + AluSp SINE Alu 1 287 -26 2469 78 0 0 chr11 17177944 17178250 -131605222 + AluY SINE Alu 1 306 -5 419 311 122 25 chr11 17180398 17180466 -131603006 + MIR SINE MIR 2 62 -200 2511 60 0 0 chr11 17180466 17180764 -131602708 + AluY SINE Alu 1 298 -13 419 311 122 25 chr11 17180764 17180933 -131602539 + MIR SINE MIR 62 262 0 620 135 108 36 chr11 17181431 17181542 -131601930 - FLAM_C SINE Alu -13 120 2 329 226 38 108 chr11 17181545 17181731 -131601741 + L1MC4 LINE L1 7869 8041 -1 726 260 76 70 chr11 17181766 17182181 -131601291 + MLT1H LTR MaLR 41 471 -78 230 360 0 11 chr11 17182637 17182726 -131600746 + L2 LINE L2 2966 3053 -219 1168 262 70 12 chr11 17182956 17183300 -131600172 + MLT1K LTR MaLR 225 588 0 2088 86 0 76 chr11 17183442 17183770 -131599702 - AluSx SINE Alu 0 305 1 2039 105 7 11 chr11 17183955 17184268 -131599204 + AluSq SINE Alu 8 319 0 2163 116 0 10 chr11 17185333 17185635 -131597837 - AluSx SINE Alu -13 299 1 605 171 106 8 chr11 17185674 17185797 -131597675 + AluJo SINE Alu 1 135 -177 1599 193 13 29 chr11 17185823 17186139 -131597333 + AluJo SINE Alu 1 311 -1 762 249 69 11 chr11 17186233 17186422 -131597050 - MIR SINE MIR -27 235 36 24 53 0 0 chr11 17186513 17186551 -131596921 + AT_rich Low_complexity Low_complexity 1 38 0 520 162 87 53 chr11 17187111 17187135 -131596337 - MER33 DNA MER1_type -2264 360 338 2195 139 0 0 chr11 17187135 17187444 -131596028 + AluSx SINE Alu 1 309 -3 520 162 87 53 chr11 17187444 17187668 -131595804 - MER33 DNA MER1_type -2286 338 23 24 0 0 0 chr11 17187832 17187856 -131595616 + AT_rich Low_complexity Low_complexity 1 24 0 1869 107 89 15 chr11 17187893 17188026 -131595446 - AluSx SINE Alu -22 290 168 2865 16 0 0 chr11 17188026 17188344 -131595128 - AluYb8 SINE Alu 0 318 1 1869 107 89 15 chr11 17188344 17188480 -131594992 - AluSx SINE Alu -144 168 1 1721 188 3 7 chr11 17188490 17188777 -131594695 - AluJo SINE Alu -26 286 1 1457 200 33 7 chr11 17188949 17189224 -131594248 - AluJo SINE Alu -30 282 1 291 324 0 0 chr11 17189400 17189468 -131594004 - L2 LINE L2 0 3313 3246 964 195 62 38 chr11 17189492 17189702 -131593770 + AluJb SINE Alu 87 301 -11 212 0 36 0 chr11 17189811 17189839 -131593633 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1957 118 0 0 chr11 17189854 17190109 -131593363 + AluSx SINE Alu 1 255 -57 433 211 111 65 chr11 17190114 17190313 -131593159 - MER21B LTR ERV1 -225 638 431 1070 207 57 9 chr11 17190313 17190663 -131592809 - MER21B LTR ERV1 -364 499 104 243 226 79 113 chr11 17190685 17190803 -131592669 + L1ME3A LINE L1 5786 5906 -264 678 179 0 17 chr11 17190803 17190920 -131592552 + FLAM_A SINE Alu 5 119 -14 243 226 79 113 chr11 17190920 17190933 -131592539 + L1ME3A LINE L1 5906 5918 -252 525 16 0 0 chr11 17190933 17190995 -131592477 + (CA)n Simple_repeat Simple_repeat 2 63 0 243 226 79 113 chr11 17190995 17191039 -131592433 + L1ME3A LINE L1 5918 5956 -214 2306 100 3 3 chr11 17191097 17191396 -131592076 + AluSp SINE Alu 1 299 -14 393 316 63 11 chr11 17191396 17191561 -131591911 + L1ME3A LINE L1 5966 6142 -28 1686 155 67 7 chr11 17191590 17191874 -131591598 + AluJb SINE Alu 1 301 -11 1895 176 3 13 chr11 17192119 17192431 -131591041 - AluJb SINE Alu -3 309 1 829 166 79 67 chr11 17192474 17192681 -131590791 + MER44D DNA MER2_type 1 204 -2287 2230 94 16 16 chr11 17192681 17192988 -131590484 + AluSx SINE Alu 1 307 -5 829 166 79 67 chr11 17192988 17193032 -131590440 + MER44D DNA MER2_type 204 525 -84 308 250 42 0 chr11 17193032 17193104 -131590368 + Tigger3b DNA MER2_type 2 76 -1155 1425 179 6 79 chr11 17193104 17193422 -131590050 + AluJo SINE Alu 1 295 -17 4681 112 41 88 chr11 17193467 17193941 -131589531 + Tigger3b DNA MER2_type 286 692 -2336 1547 182 17 31 chr11 17193941 17194232 -131589240 + AluJo SINE Alu 1 287 -25 4681 112 41 88 chr11 17194232 17194749 -131588723 + Tigger3b DNA MER2_type 692 1231 0 508 121 0 44 chr11 17194749 17194839 -131588633 + MER44D DNA MER2_type 523 608 -1 1294 245 97 38 chr11 17195002 17195766 -131587706 + L2 LINE L2 2518 3309 -4 1461 134 119 22 chr11 17196081 17196349 -131587123 + AluJb SINE Alu 1 294 -18 1020 131 12 0 chr11 17196653 17196821 -131586651 - L1MB7 LINE L1 -2 6182 6013 2308 105 0 10 chr11 17197344 17197648 -131585824 + AluSx SINE Alu 1 301 -11 1626 129 0 0 chr11 17198622 17198847 -131584625 + AluSx SINE Alu 2 226 -86 546 147 73 0 chr11 17198879 17198988 -131584484 - L1MB7 LINE L1 -77 6107 5991 589 103 0 0 chr11 17199042 17199129 -131584343 + AluSx SINE Alu 222 308 -2 2284 97 7 0 chr11 17199272 17199560 -131583912 + AluSx SINE Alu 1 290 -22 273 189 19 85 chr11 17199567 17199585 -131583887 + L1MCc LINE L1 1437 1455 -4968 2205 88 24 14 chr11 17199585 17199879 -131583593 + AluSx SINE Alu 1 297 -15 273 189 19 85 chr11 17199879 17199966 -131583506 + L1MCc LINE L1 1455 1535 -4888 704 244 63 22 chr11 17199982 17200297 -131583175 + L1MCc LINE L1 1782 2109 -5013 926 274 127 46 chr11 17200507 17200988 -131582484 + MER77 LTR ERV1 80 599 -6 1493 188 3 45 chr11 17201139 17201448 -131582024 + AluJb SINE Alu 1 296 -16 2029 143 10 0 chr11 17201742 17202035 -131581437 - AluSx SINE Alu -16 296 1 1163 158 122 83 chr11 17202142 17202552 -131580920 + MSTC LTR MaLR 3 428 0 2357 90 0 0 chr11 17202854 17203154 -131580318 + AluSc SINE Alu 1 300 -9 986 62 0 7 chr11 17203154 17203298 -131580174 + (GGGGA)n Simple_repeat Simple_repeat 5 147 0 199 82 0 61 chr11 17203308 17203357 -131580115 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 370 289 54 60 chr11 17203931 17204066 -131579406 + MIR3 SINE MIR 42 177 -31 2191 120 3 0 chr11 17204066 17204367 -131579105 + AluSq SINE Alu 1 302 -11 370 289 54 60 chr11 17204367 17204397 -131579075 + MIR3 SINE MIR 177 206 -2 2228 115 0 0 chr11 17204573 17204868 -131578604 + AluSc SINE Alu 1 295 -14 1822 144 0 72 chr11 17204878 17205197 -131578275 + AluSx SINE Alu 1 296 -16 2312 103 0 0 chr11 17205199 17205509 -131577963 + AluY SINE Alu 1 310 -1 21 36 0 0 chr11 17205640 17205668 -131577804 + AT_rich Low_complexity Low_complexity 1 28 0 524 340 79 14 chr11 17205701 17205916 -131577556 - L2 LINE L2 -544 2770 2542 2331 53 0 33 chr11 17206020 17206319 -131577153 - AluY SINE Alu -21 290 2 456 149 0 0 chr11 17206458 17206532 -131576940 + AluS SINE Alu 1 74 -237 1585 122 9 0 chr11 17206532 17206761 -131576711 - AluJb SINE Alu -81 231 1 2225 100 0 7 chr11 17207554 17207853 -131575619 - AluSx SINE Alu -15 297 1 327 258 153 24 chr11 17207853 17207977 -131575495 + MIR SINE MIR 79 218 -44 799 261 0 0 chr11 17208090 17208243 -131575229 + FAM SINE Alu 2 154 -31 183 42 0 0 chr11 17208245 17208269 -131575203 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 125 0 0 chr11 17208280 17208577 -131574895 + AluSx SINE Alu 3 299 -13 2886 163 73 16 chr11 17208590 17209102 -131574370 + L1MB4 LINE L1 5373 5971 -209 1885 92 138 0 chr11 17209102 17209363 -131574109 + AluSc SINE Alu 1 297 -12 2886 163 73 16 chr11 17209363 17209452 -131574020 + L1MB4 LINE L1 5971 6053 -127 1349 92 0 0 chr11 17209464 17209637 -131573835 + AluSg/x SINE Alu 121 293 -19 323 141 22 133 chr11 17209744 17209879 -131573593 + L1MD3 LINE L1 7876 7995 0 1454 155 0 106 chr11 17209890 17210239 -131573233 + L1ME1 LINE L1 5849 6160 -6 2230 117 0 0 chr11 17210361 17210661 -131572811 + AluSx SINE Alu 1 300 -12 2389 104 0 0 chr11 17210684 17210992 -131572480 + AluSc SINE Alu 1 308 -1 2334 100 0 3 chr11 17211403 17211713 -131571759 + AluSx SINE Alu 1 309 -3 1558 189 46 0 chr11 17211739 17212019 -131571453 + AluJb SINE Alu 5 297 -15 196 287 161 34 chr11 17212020 17212146 -131571326 + MIR SINE MIR 23 170 -84 964 118 0 15 chr11 17212641 17212776 -131570696 + FLAM_C SINE Alu 1 133 0 801 97 19 0 chr11 17213117 17213220 -131570252 - AluJo/FRAM SINE Alu -21 291 187 2490 60 0 7 chr11 17213221 17213522 -131569950 + AluY SINE Alu 1 299 -12 237 313 16 0 chr11 17213523 17213587 -131569885 - AluJ/FLAM SINE Alu -237 65 1 693 210 34 0 chr11 17213587 17213733 -131569739 + MER33 DNA MER1_type 1 144 -100 259 294 64 18 chr11 17213810 17213919 -131569553 - MIR SINE MIR -75 133 19 2177 113 10 0 chr11 17214326 17214619 -131568853 + AluSx SINE Alu 1 296 -16 2297 93 0 16 chr11 17214620 17214933 -131568539 + AluSc SINE Alu 1 308 -1 1949 122 31 7 chr11 17215270 17215557 -131567915 + AluSx SINE Alu 2 295 -17 298 135 0 0 chr11 17215983 17216035 -131567437 + Alu SINE Alu 251 302 0 25 31 0 0 chr11 17216931 17216963 -131566509 + GC_rich Low_complexity Low_complexity 1 32 0 257 149 21 0 chr11 17218211 17218258 -131565214 - MIR SINE MIR -112 150 103 565 151 17 8 chr11 17218999 17219118 -131564354 + CT-rich Low_complexity Low_complexity 3 122 0 2201 92 0 3 chr11 17219582 17219865 -131563607 - AluSp SINE Alu -11 302 21 882 238 34 21 chr11 17220007 17220256 -131563216 - MIR SINE MIR -10 252 1 1806 150 59 3 chr11 17220388 17220675 -131562797 - AluSx SINE Alu -5 307 5 557 298 93 36 chr11 17220740 17220948 -131562524 - L2 LINE L2 -215 3057 2862 860 152 8 0 chr11 17220948 17221073 -131562399 - FLAM_C SINE Alu -7 126 1 557 298 93 36 chr11 17221073 17221320 -131562152 - L2 LINE L2 -410 2862 2582 2217 96 3 0 chr11 17221342 17221624 -131561848 + AluSq SINE Alu 12 294 -19 1685 182 86 138 chr11 17221792 17222364 -131561108 - MLT1F1 LTR MaLR 0 567 1 295 289 13 0 chr11 17222427 17222503 -131560969 - L2 LINE L2 -298 2974 2898 700 240 88 59 chr11 17222650 17222696 -131560776 + L1MC4a LINE L1 5670 5713 -408 1943 142 16 128 chr11 17222696 17222817 -131560655 - MLT1B LTR MaLR 0 390 257 2130 123 7 0 chr11 17222817 17223117 -131560355 - AluSx SINE Alu -10 302 1 1943 142 16 128 chr11 17223117 17223431 -131560041 - MLT1B LTR MaLR -133 257 4 1700 256 47 14 chr11 17223431 17223860 -131559612 - LTR47B LTR ERVL 0 443 1 700 240 88 59 chr11 17223860 17224288 -131559184 + L1MC4a LINE L1 5712 5896 -225 838 41 0 0 chr11 17224292 17224389 -131559083 + L1PA8 LINE L1 6073 6169 -3 2339 65 17 3 chr11 17224476 17224766 -131558706 + AluSg SINE Alu 1 294 -16 360 264 11 11 chr11 17224772 17224859 -131558613 + Tigger2 DNA MER2_type 2632 2718 0 1877 273 133 46 chr11 17225020 17225414 -131558058 + L2 LINE L2 1711 2069 -1245 2183 107 0 7 chr11 17225414 17225712 -131557760 - AluSx SINE Alu -16 296 1 1877 273 133 46 chr11 17225712 17226210 -131557262 + L2 LINE L2 2069 2681 -633 1856 139 0 4 chr11 17226247 17226520 -131556952 + AluJo SINE Alu 11 282 -30 1234 193 23 26 chr11 17226573 17226837 -131556635 + AluJo SINE Alu 42 304 -8 1230 266 97 30 chr11 17226839 17227397 -131556075 + L2 LINE L2 2708 3313 0 1887 181 0 0 chr11 17227486 17227785 -131555687 - AluJb SINE Alu -13 299 1 868 208 164 9 chr11 17228107 17228148 -131555324 - MIR SINE MIR 0 262 229 1973 141 0 3 chr11 17228148 17228490 -131554982 - AluJb SINE Alu 0 341 1 868 208 164 9 chr11 17228490 17228673 -131554799 - MIR SINE MIR -33 229 2 2080 184 56 37 chr11 17228806 17229107 -131554365 - Charlie4a DNA MER1_type -1453 508 193 2295 106 0 3 chr11 17229107 17229408 -131554064 + AluSx SINE Alu 1 300 -12 2080 184 56 37 chr11 17229408 17229589 -131553883 - Charlie4a DNA MER1_type -1768 193 17 2067 114 6 25 chr11 17229810 17230127 -131553345 + AluSq SINE Alu 1 311 -2 658 256 0 35 chr11 17230651 17230823 -131552649 - MIR SINE MIR 0 262 97 2144 122 0 7 chr11 17230979 17231282 -131552190 - AluSx SINE Alu -11 301 1 367 163 47 108 chr11 17231301 17231430 -131552042 - MLT1J1 LTR MaLR 0 446 326 516 236 65 0 chr11 17231516 17231639 -131551833 - MLT1J2 LTR MaLR -317 133 3 2563 54 0 0 chr11 17232680 17232977 -131550495 + AluY SINE Alu 1 297 -14 1351 108 0 0 chr11 17233398 17233574 -131549898 - AluSc SINE Alu -2 307 132 2222 100 0 50 chr11 17233574 17233893 -131549579 - AluSg SINE Alu -7 303 1 2446 77 3 0 chr11 17233893 17234189 -131549283 - AluSp SINE Alu -15 298 1 214 274 20 0 chr11 17234532 17234583 -131548889 + L2 LINE L2 3139 3190 -82 518 213 14 78 chr11 17234585 17234636 -131548836 - FLAM_A SINE Alu -170 132 79 2173 123 3 0 chr11 17234636 17234936 -131548536 - AluSg SINE Alu -9 301 1 518 213 14 78 chr11 17234936 17235025 -131548447 - FLAM_A SINE Alu -223 79 1 2272 112 0 0 chr11 17235612 17235916 -131547556 + AluSg SINE Alu 1 304 -6 472 169 0 0 chr11 17236035 17236126 -131547346 - AluJ/FRAM SINE Alu 0 312 226 * 796 195 86 46 chr11 17236122 17236296 -131547176 - AluSx SINE Alu -126 186 6 24 67 0 0 chr11 17236366 17236411 -131547061 + AT_rich Low_complexity Low_complexity 1 45 0 223 154 0 26 chr11 17236589 17236628 -131546844 + CT-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 17236803 17236831 -131546641 + AT_rich Low_complexity Low_complexity 1 28 0 2407 102 0 6 chr11 17236937 17237251 -131546221 + AluSx SINE Alu 1 312 0 2293 98 0 3 chr11 17237319 17237616 -131545856 + AluSq SINE Alu 1 296 -17 2511 70 0 0 chr11 17237834 17238134 -131545338 - AluY SINE Alu -11 300 1 2884 13 0 0 chr11 17238729 17239040 -131544432 - AluYb8 SINE Alu -7 311 1 245 240 0 0 chr11 17239645 17239695 -131543777 + (TG)n Simple_repeat Simple_repeat 1 50 0 392 292 58 8 chr11 17239755 17239875 -131543597 + L2 LINE L2 3187 3312 -1 2153 130 0 0 chr11 17240057 17240350 -131543122 + AluSx SINE Alu 1 293 -19 1692 149 23 30 chr11 17240618 17240779 -131542693 - AluJo SINE Alu -12 300 140 2227 105 10 0 chr11 17240779 17241073 -131542399 - AluSp SINE Alu -16 297 1 1692 149 23 30 chr11 17241073 17241213 -131542259 - AluJo SINE Alu -172 140 1 315 0 0 0 chr11 17242090 17242125 -131541347 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr11 17243033 17243061 -131540411 + AT_rich Low_complexity Low_complexity 1 28 0 2347 81 20 0 chr11 17243830 17244125 -131539347 - AluSx SINE Alu -11 301 1 529 251 5 82 chr11 17244140 17244335 -131539137 + LTR41 LTR ERVL 2 181 -592 1236 189 9 40 chr11 17245044 17245272 -131538200 - MER58A DNA MER1_type -3 221 1 2323 80 0 17 chr11 17245328 17245628 -131537844 - AluSq SINE Alu -18 295 1 2046 126 14 0 chr11 17245649 17245935 -131537537 - AluSx SINE Alu -18 294 5 765 199 0 22 chr11 17246549 17246685 -131536787 + FLAM_A SINE Alu 1 133 0 2188 222 39 16 chr11 17246733 17247250 -131536222 + L1MB8 LINE L1 5648 6176 -2 449 333 185 4 chr11 17247261 17247616 -131535856 - L2 LINE L2 -214 3099 2691 1085 153 38 0 chr11 17247682 17247865 -131535607 - AluSg/x SINE Alu -1 309 120 899 206 54 17 chr11 17247867 17248150 -131535322 - L1MD3 LINE L1 -1 7987 7488 1786 254 131 42 chr11 17248151 17248401 -131535071 - L2 LINE L2 -632 2682 2456 606 149 44 18 chr11 17248401 17248515 -131534957 + L1MC1 LINE L1 6217 6333 0 1786 254 131 42 chr11 17248515 17248949 -131534523 - L2 LINE L2 -858 2456 1937 451 191 0 5 chr11 17248953 17249133 -131534339 + AluJo SINE Alu 5 279 -33 219 36 0 0 chr11 17249133 17249161 -131534311 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 800 235 86 8 chr11 17249165 17249399 -131534073 - L2 LINE L2 -1374 1940 1689 425 281 231 46 chr11 17249403 17249905 -131533567 + L2 LINE L2 2158 2752 -562 537 217 19 0 chr11 17249909 17250015 -131533457 - MER58B DNA MER1_type 0 341 234 2090 142 7 0 chr11 17250071 17250380 -131533092 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 17250398 17250419 -131533053 + AT_rich Low_complexity Low_complexity 1 21 0 263 337 134 72 chr11 17250612 17250903 -131532569 + L2 LINE L2 2963 3271 -1 2390 92 17 6 chr11 17250999 17251027 -131532445 + THE1C-int LTR MaLR 1263 1289 -291 2174 125 3 3 chr11 17251027 17251338 -131532134 + AluSx SINE Alu 1 311 -1 2390 92 17 6 chr11 17251338 17251655 -131531817 + THE1C-int LTR MaLR 1289 1576 -4 1689 142 86 10 chr11 17251659 17251962 -131531510 + THE1C LTR MaLR 1 326 -49 1839 163 0 26 chr11 17252850 17253156 -131530316 + AluSx SINE Alu 5 302 -10 2110 97 38 0 chr11 17254351 17254639 -131528833 + AluSp SINE Alu 1 299 -14 707 112 0 91 chr11 17255277 17255418 -131528054 - Charlie5 DNA MER1_type -27 2585 2458 1337 149 47 8 chr11 17255418 17255653 -131527819 - MER2 DNA MER2_type 0 345 102 331 97 0 32 chr11 17255696 17255758 -131527714 + L1MA3 LINE L1 6246 6305 0 767 181 14 0 chr11 17255764 17255902 -131527570 - MER2 DNA MER2_type -190 155 16 540 159 0 0 chr11 17256065 17256153 -131527319 + AluS SINE Alu 221 308 -4 22 56 0 0 chr11 17256423 17256459 -131527013 + AT_rich Low_complexity Low_complexity 1 36 0 1029 249 5 5 chr11 17257957 17258178 -131525294 + MIR SINE MIR 21 241 -21 349 115 49 0 chr11 17258270 17258331 -131525141 + MSTB1 LTR MaLR 369 432 0 544 110 30 0 chr11 17258557 17258657 -131524815 + L1MB3 LINE L1 6081 6183 0 2156 131 0 13 chr11 17259564 17259869 -131523603 + AluSq SINE Alu 1 301 -12 347 235 25 0 chr11 17259976 17260057 -131523415 - MIR3 SINE MIR 0 208 126 195 42 0 0 chr11 17260491 17260515 -131522957 + (TG)n Simple_repeat Simple_repeat 2 25 0 203 173 27 53 chr11 17261110 17261185 -131522287 + GA-rich Low_complexity Low_complexity 5 77 0 275 308 75 50 chr11 17261354 17261474 -131521998 + MIR SINE MIR 21 143 -65 29 28 0 0 chr11 17261843 17261879 -131521593 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr11 17262152 17262195 -131521277 + AT_rich Low_complexity Low_complexity 1 43 0 1516 183 16 0 chr11 17262800 17263052 -131520420 - AluJb SINE Alu -11 301 46 649 252 0 0 chr11 17263273 17263400 -131520072 + FLAM_A SINE Alu 1 127 -6 2176 93 0 0 chr11 17263626 17263896 -131519576 + AluSx SINE Alu 35 304 -8 39 0 0 20 chr11 17264471 17264482 -131518990 + AT_rich Low_complexity Low_complexity 1 11 -38 2427 62 7 0 chr11 17264482 17264772 -131518700 + AluSp SINE Alu 1 292 -21 39 0 0 20 chr11 17264772 17264810 -131518662 + AT_rich Low_complexity Low_complexity 11 49 0 776 223 69 5 chr11 17264810 17265012 -131518460 - MIR SINE MIR -47 215 1 850 225 57 68 chr11 17266157 17266548 -131516924 - MLT2B1 LTR ERVL -67 397 1 1633 195 19 7 chr11 17266962 17267269 -131516203 + AluJb SINE Alu 1 311 -1 2244 108 0 16 chr11 17268468 17268783 -131514689 + AluSx SINE Alu 1 310 -2 2242 142 26 3 chr11 17268858 17269245 -131514227 + MER57A LTR ERV1 8 403 0 222 259 24 71 chr11 17269281 17269366 -131514106 - L3 LINE CR1 -196 1381 1301 2003 117 3 7 chr11 17269439 17269751 -131513721 + AluSx SINE Alu 1 311 0 1433 172 20 63 chr11 17269822 17270124 -131513348 - AluJo SINE Alu -19 293 5 213 274 0 20 chr11 17270396 17270447 -131513025 - MIR3 SINE MIR -48 160 111 252 303 92 9 chr11 17270452 17270561 -131512911 - L3 LINE CR1 -341 1236 1119 1144 200 0 10 chr11 17270588 17270793 -131512679 + AluJb SINE Alu 104 306 -6 265 302 16 0 chr11 17271827 17271890 -131511582 - L3 LINE CR1 -115 1462 1399 2286 80 10 10 chr11 17271919 17272221 -131511251 + AluSp SINE Alu 11 312 -1 508 179 179 34 chr11 17272317 17272552 -131510920 - L1MC5 LINE L1 -48 7913 7645 358 218 13 13 chr11 17272552 17272630 -131510842 + MIR SINE MIR 104 181 -81 1830 174 0 7 chr11 17273392 17273679 -131509793 - AluJb SINE Alu -21 291 7 2077 119 7 0 chr11 17273753 17274038 -131509434 + AluSp SINE Alu 1 287 -26 2469 78 0 0 chr11 17274712 17275018 -131508454 + AluY SINE Alu 1 306 -5 419 311 122 25 chr11 17277166 17277234 -131506238 + MIR SINE MIR 2 62 -200 2511 60 0 0 chr11 17277234 17277532 -131505940 + AluY SINE Alu 1 298 -13 419 311 122 25 chr11 17277532 17277701 -131505771 + MIR SINE MIR 62 262 0 620 135 108 36 chr11 17278199 17278310 -131505162 - FLAM_C SINE Alu -13 120 2 329 226 38 108 chr11 17278313 17278499 -131504973 + L1MC4 LINE L1 7869 8041 -1 726 260 76 70 chr11 17278534 17278949 -131504523 + MLT1H LTR MaLR 41 471 -78 239 348 0 11 chr11 17279405 17279494 -131503978 + L2 LINE L2 2966 3053 -219 1168 262 70 12 chr11 17279724 17280068 -131503404 + MLT1K LTR MaLR 225 588 0 2099 82 0 76 chr11 17280210 17280538 -131502934 - AluSx SINE Alu 0 305 1 2682 7 0 23 chr11 17280718 17281027 -131502445 + AluYa5 SINE Alu 1 302 -9 1995 105 11 11 chr11 17281036 17281348 -131502124 + AluSq SINE Alu 8 319 0 2173 116 0 10 chr11 17282415 17282718 -131500754 - AluSx SINE Alu -12 300 1 581 165 102 39 chr11 17282757 17282884 -131500588 + AluJo SINE Alu 1 135 -177 1599 193 13 29 chr11 17282910 17283226 -131500246 + AluJo SINE Alu 1 311 -1 762 249 69 11 chr11 17283320 17283509 -131499963 - MIR SINE MIR -27 235 36 24 53 0 0 chr11 17283600 17283638 -131499834 + AT_rich Low_complexity Low_complexity 1 38 0 520 161 87 55 chr11 17284198 17284222 -131499250 - MER33 DNA MER1_type -2264 321 299 2220 138 0 0 chr11 17284222 17284534 -131498938 + AluSx SINE Alu 1 312 0 520 161 87 55 chr11 17284534 17284759 -131498713 - MER33 DNA MER1_type -2286 299 23 24 0 0 0 chr11 17284923 17284947 -131498525 + AT_rich Low_complexity Low_complexity 1 24 0 1791 101 94 43 chr11 17284984 17285123 -131498349 - AluSx SINE Alu -22 290 159 2891 9 0 0 chr11 17285123 17285438 -131498034 - AluYb8 SINE Alu -3 315 1 1791 101 94 43 chr11 17285438 17285574 -131497898 - AluSx SINE Alu -153 159 1 1743 190 3 7 chr11 17285576 17285871 -131497601 - AluJo SINE Alu -18 294 1 1457 200 33 7 chr11 17286043 17286318 -131497154 - AluJo SINE Alu -30 282 1 291 324 0 0 chr11 17286494 17286562 -131496910 - L2 LINE L2 0 3313 3246 964 195 62 38 chr11 17286586 17286796 -131496676 + AluJb SINE Alu 87 301 -11 212 0 36 0 chr11 17286905 17286933 -131496539 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1957 118 0 0 chr11 17286949 17287204 -131496268 + AluSx SINE Alu 1 255 -57 433 211 111 65 chr11 17287209 17287408 -131496064 - MER21B LTR ERV1 -225 638 431 1070 207 57 9 chr11 17287408 17287758 -131495714 - MER21B LTR ERV1 -364 499 104 437 247 64 144 chr11 17287779 17287897 -131495575 + L1ME3A LINE L1 5786 5912 -258 667 181 0 17 chr11 17287897 17288013 -131495459 + FLAM_A SINE Alu 5 118 -15 513 0 0 0 chr11 17288013 17288070 -131495402 + (TA)n Simple_repeat Simple_repeat 1 57 0 399 21 0 0 chr11 17288069 17288117 -131495355 + (CA)n Simple_repeat Simple_repeat 2 49 0 437 247 64 144 chr11 17288070 17288219 -131495253 + L1ME3A LINE L1 5911 5965 -205 2313 100 3 3 chr11 17288219 17288518 -131494954 + AluSp SINE Alu 1 299 -14 437 247 64 144 chr11 17288518 17288683 -131494789 + L1ME3A LINE L1 5965 6142 -28 1686 155 67 7 chr11 17288712 17288996 -131494476 + AluJb SINE Alu 1 301 -11 1881 179 3 13 chr11 17289241 17289553 -131493919 - AluJb SINE Alu -3 309 1 835 166 79 67 chr11 17289596 17289803 -131493669 + MER44D DNA MER2_type 1 204 -2287 2195 94 16 19 chr11 17289803 17290111 -131493361 + AluSx SINE Alu 1 307 -5 835 166 79 67 chr11 17290111 17290155 -131493317 + MER44D DNA MER2_type 204 525 -84 308 250 42 0 chr11 17290155 17290227 -131493245 + Tigger3b DNA MER2_type 2 76 -1155 1431 180 6 76 chr11 17290227 17290544 -131492928 + AluJo SINE Alu 1 295 -17 4684 113 41 87 chr11 17290589 17291062 -131492410 + Tigger3b DNA MER2_type 286 692 -2336 1547 182 17 31 chr11 17291062 17291353 -131492119 + AluJo SINE Alu 1 287 -25 4684 113 41 87 chr11 17291353 17291870 -131491602 + Tigger3b DNA MER2_type 692 1231 0 467 143 0 44 chr11 17291870 17291960 -131491512 + MER44D DNA MER2_type 619 704 -1 1276 244 99 40 chr11 17292123 17292887 -131490585 + L2 LINE L2 2518 3309 -4 1461 134 119 22 chr11 17293202 17293470 -131490002 + AluJb SINE Alu 1 294 -18 214 346 10 30 chr11 17293470 17293571 -131489901 - L2 LINE L2 -1031 2283 2185 1020 131 12 0 chr11 17293774 17293942 -131489530 - L1MB7 LINE L1 -2 6182 6013 2308 105 0 10 chr11 17294465 17294769 -131488703 + AluSx SINE Alu 1 301 -11 1626 129 0 0 chr11 17295743 17295968 -131487504 + AluSx SINE Alu 2 226 -86 546 147 73 0 chr11 17296000 17296109 -131487363 - L1MB7 LINE L1 -77 6107 5991 570 108 0 0 chr11 17296163 17296246 -131487226 + AluSx SINE Alu 223 305 -6 663 278 52 51 chr11 17296247 17296392 -131487080 + L1MEc LINE L1 793 936 -5460 2284 97 7 0 chr11 17296392 17296680 -131486792 + AluSx SINE Alu 1 290 -22 663 278 52 51 chr11 17296680 17296705 -131486767 + L1MEc LINE L1 936 959 -5437 2225 85 24 14 chr11 17296705 17297000 -131486472 + AluSx SINE Alu 1 298 -14 663 278 52 51 chr11 17297000 17297418 -131486054 + L1MEc LINE L1 959 1383 -5013 926 274 127 46 chr11 17297628 17298109 -131485363 + MER77 LTR ERV1 80 599 -6 1480 191 3 45 chr11 17298260 17298569 -131484903 + AluJb SINE Alu 1 296 -16 1984 144 14 0 chr11 17298863 17299155 -131484317 - AluSx SINE Alu -16 296 1 1163 158 122 83 chr11 17299262 17299672 -131483800 + MSTC LTR MaLR 3 428 0 2208 90 0 0 chr11 17299974 17300329 -131483143 + AluSc SINE Alu 1 355 0 369 299 55 49 chr11 17300901 17301036 -131482436 + MIR3 SINE MIR 42 180 -28 2156 119 3 3 chr11 17301036 17301338 -131482134 + AluSq SINE Alu 1 302 -11 369 299 55 49 chr11 17301338 17301366 -131482106 + MIR3 SINE MIR 180 206 -2 1905 173 0 3 chr11 17301776 17302089 -131481383 - AluSx SINE Alu 0 312 1 2741 168 27 12 chr11 17302091 17302651 -131480821 - L1MB7 LINE L1 -69 6115 5548 2486 82 0 0 chr11 17302745 17303050 -131480422 - AluSq SINE Alu -8 305 1 1996 100 4 7 chr11 17303050 17303319 -131480153 - AluSx SINE Alu -7 305 38 1905 121 11 4 chr11 17303423 17303696 -131479776 + AluSx SINE Alu 21 295 -17 26 0 0 0 chr11 17303752 17303778 -131479694 + AT_rich Low_complexity Low_complexity 1 26 0 2104 128 10 0 chr11 17303864 17304169 -131479303 + AluSx SINE Alu 1 308 -4 207 0 0 0 chr11 17304344 17304367 -131479105 + (A)n Simple_repeat Simple_repeat 1 23 0 1836 145 43 0 chr11 17304450 17304732 -131478740 + AluJo SINE Alu 3 296 -16 2316 95 0 0 chr11 17304814 17305109 -131478363 + AluSg SINE Alu 1 295 -15 1034 211 0 0 chr11 17305123 17305298 -131478174 - FAM SINE Alu 0 175 1 943 268 49 27 chr11 17305818 17306147 -131477325 + MER102b DNA MER1_type 1 336 -5 2663 119 74 43 chr11 17306379 17306430 -131477042 + MER34 LTR ERV1 12 60 -482 261 0 0 0 chr11 17306430 17306459 -131477013 + (TA)n Simple_repeat Simple_repeat 2 30 0 2198 124 0 3 chr11 17306459 17306765 -131476707 - AluSg SINE Alu -5 305 1 2663 119 74 43 chr11 17306765 17307223 -131476249 + MER34 LTR ERV1 59 538 -4 740 199 0 0 chr11 17307372 17307503 -131475969 + FLAM_C SINE Alu 1 131 -12 2284 120 0 0 chr11 17307801 17308110 -131475362 + AluSg SINE Alu 1 309 -1 1436 190 50 0 chr11 17308402 17308681 -131474791 - AluJb SINE Alu -15 297 5 2205 97 3 3 chr11 17308707 17309015 -131474457 - AluSx SINE Alu -4 308 1 2264 107 0 0 chr11 17309433 17309742 -131473730 - AluSc SINE Alu 0 309 1 2115 117 0 0 chr11 17309765 17310065 -131473407 - AluSx SINE Alu -12 300 1 1425 155 0 106 chr11 17310187 17310536 -131472936 - L1ME1 LINE L1 -6 6160 5849 298 156 15 126 chr11 17310549 17310684 -131472788 - L1MC4 LINE L1 0 8019 7876 1318 86 0 0 chr11 17310791 17310965 -131472507 - AluSg/x SINE Alu -18 294 121 2800 162 73 18 chr11 17310977 17311066 -131472406 - L1MB4 LINE L1 -127 6053 5970 1691 92 146 0 chr11 17311066 17311326 -131472146 - AluSc SINE Alu -11 298 1 2800 162 73 18 chr11 17311326 17311839 -131471633 - L1MB4 LINE L1 -210 5970 5373 2084 125 0 0 chr11 17311852 17312149 -131471323 - AluSx SINE Alu -13 299 3 183 42 0 0 chr11 17312162 17312186 -131471286 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 748 255 0 0 chr11 17312188 17312337 -131471135 - FAM SINE Alu -31 154 6 341 266 153 24 chr11 17312454 17312578 -131470894 - MIR SINE MIR -44 218 79 2142 101 0 3 chr11 17312578 17312875 -131470597 + AluSx SINE Alu 1 296 -16 1422 123 18 0 chr11 17313668 17313895 -131469577 + AluJb SINE Alu 1 231 -81 464 151 0 0 chr11 17313895 17313968 -131469504 - AluS SINE Alu -235 74 2 2216 50 3 34 chr11 17314108 17314406 -131469066 + AluY SINE Alu 2 290 -21 513 349 79 14 chr11 17314510 17314725 -131468747 + L2 LINE L2 2542 2770 -544 21 36 0 0 chr11 17314758 17314786 -131468686 + AT_rich Low_complexity Low_complexity 1 28 0 2221 99 0 0 chr11 17314917 17315221 -131468251 - AluY SINE Alu -1 310 7 1713 142 0 72 chr11 17315229 17315547 -131467925 - AluSx SINE Alu -17 295 1 2174 92 3 0 chr11 17315557 17315852 -131467620 - AluSg SINE Alu -14 296 1 485 213 14 78 chr11 17316439 17316528 -131466944 + FLAM_A SINE Alu 1 79 -223 2067 123 3 0 chr11 17316528 17316828 -131466644 + AluSg SINE Alu 1 301 -9 485 213 14 78 chr11 17316828 17316879 -131466593 + FLAM_A SINE Alu 79 132 -170 256 286 172 50 chr11 17316881 17317224 -131466248 - L2 LINE L2 -82 3231 2847 2330 77 3 0 chr11 17317275 17317573 -131465899 + AluSp SINE Alu 1 299 -14 1743 112 18 35 chr11 17317573 17317858 -131465614 + AluSg SINE Alu 1 281 -29 252 296 0 28 chr11 17318306 17318377 -131465095 + L2 LINE L2 3204 3272 0 1306 178 13 0 chr11 17318460 17318691 -131464781 - AluJb SINE Alu -39 273 40 2177 150 16 25 chr11 17318802 17319168 -131464304 + MER44D DNA MER2_type 1 418 -187 1193 138 9 23 chr11 17319168 17319385 -131464087 - AluSq SINE Alu -12 301 88 497 78 0 0 chr11 17319387 17319451 -131464021 - AluSp/q SINE Alu -62 251 188 341 105 35 35 chr11 17319453 17319510 -131463962 + Tigger3b DNA MER2_type 44 100 -1131 240 100 0 0 chr11 17319535 17319575 -131463897 + (TG)n Simple_repeat Simple_repeat 1 40 0 822 191 0 8 chr11 17319575 17319699 -131463773 - FRAM SINE Alu -168 144 20 1123 124 0 0 chr11 17319716 17319877 -131463595 - AluSg/x SINE Alu -18 292 132 2104 120 3 0 chr11 17319877 17320178 -131463294 - AluSg SINE Alu -6 304 3 4364 113 95 29 chr11 17320178 17320217 -131463255 + Tigger3b DNA MER2_type 280 315 -2713 448 74 0 179 chr11 17320217 17320271 -131463201 - MADE1 DNA Mariner -2 78 46 1862 122 10 7 chr11 17320271 17320559 -131462913 + AluSq SINE Alu 4 292 -21 448 74 0 179 chr11 17320559 17320599 -131462873 - MADE1 DNA Mariner -34 46 1 4364 113 95 29 chr11 17320599 17320976 -131462496 + Tigger3b DNA MER2_type 315 665 -2363 2019 110 4 0 chr11 17320976 17321285 -131462187 + AluSx SINE Alu 1 310 0 4364 113 95 29 chr11 17321285 17321674 -131461798 + Tigger3b DNA MER2_type 665 1141 -90 4915 76 11 73 chr11 17321680 17322214 -131461258 + LTR8 LTR ERV1 3 480 -211 2021 107 13 7 chr11 17322214 17322523 -131460949 + AluSx SINE Alu 2 312 0 4915 76 11 73 chr11 17322523 17322723 -131460749 + LTR8 LTR ERV1 480 691 0 466 209 0 0 chr11 17322731 17322817 -131460655 + MER44D DNA MER2_type 618 703 -2 1617 130 63 18 chr11 17322917 17323202 -131460270 - AluSg SINE Alu -12 298 1 827 99 38 15 chr11 17323610 17323741 -131459731 - AluSq/x SINE Alu -177 135 2 2134 102 7 0 chr11 17323743 17324038 -131459434 - AluSx SINE Alu -15 297 1 266 83 0 0 chr11 17324182 17324218 -131459254 - tRNA-His-CAC tRNA tRNA -39 36 1 193 261 43 0 chr11 17324967 17325013 -131458459 - MIR SINE MIR -19 243 196 368 301 0 45 chr11 17325077 17325137 -131458335 + L1MC4a LINE L1 5797 5858 -1950 2120 118 0 3 chr11 17325137 17325434 -131458038 + AluSp SINE Alu 2 297 -16 368 301 0 45 chr11 17325434 17325506 -131457966 + L1MC4a LINE L1 5858 5923 -1885 267 254 0 0 chr11 17325517 17325572 -131457900 + L2 LINE L2 691 745 -2569 1207 237 58 62 chr11 17325588 17325647 -131457825 + L2 LINE L2 1169 1227 -2087 1588 167 37 10 chr11 17325647 17325941 -131457531 + AluJo SINE Alu 1 302 -10 1207 237 58 62 chr11 17325941 17326298 -131457174 + L2 LINE L2 1227 1583 -1731 231 194 39 175 chr11 17326446 17326549 -131456923 + MIR SINE MIR 18 106 -102 828 229 56 104 chr11 17326645 17327020 -131456452 - LTR67 LTR ERVL -3 554 198 790 159 8 15 chr11 17327159 17327291 -131456181 + FLAM_C SINE Alu 6 136 -7 22 0 0 30 chr11 17327291 17327305 -131456167 + AT_rich Low_complexity Low_complexity 1 14 -18 1972 128 0 17 chr11 17327305 17327603 -131455869 + AluSx SINE Alu 1 293 -19 22 0 0 30 chr11 17327603 17327621 -131455851 + AT_rich Low_complexity Low_complexity 14 32 0 1524 121 103 18 chr11 17327723 17327996 -131455476 - AluSx SINE Alu -14 298 3 2238 108 0 0 chr11 17328272 17328579 -131454893 - AluSx SINE Alu -3 309 3 2247 95 0 7 chr11 17328863 17329167 -131454305 - AluSg SINE Alu -8 302 1 415 321 74 37 chr11 17329221 17329411 -131454061 + MIR SINE MIR 65 261 -1 399 256 172 0 chr11 17329409 17329539 -131453933 - MIR SINE MIR -45 163 13 * 1923 114 6 25 chr11 17329801 17330116 -131453356 + AluSx SINE Alu 1 309 -3 1016 212 72 13 chr11 17330181 17330417 -131453055 + MIR SINE MIR 3 252 -10 1733 96 0 0 chr11 17331079 17331309 -131452163 + AluSg/x SINE Alu 81 310 0 295 253 114 0 chr11 17331437 17331516 -131451956 + MIR SINE MIR 33 120 -88 3414 35 0 0 chr11 17331674 17332076 -131451396 - L1PA4 LINE L1 -2 6153 5752 341 62 0 21 chr11 17332076 17332113 -131451359 + L1PA4 LINE L1 5705 5742 -413 191 386 11 0 chr11 17332113 17332201 -131451271 - MIR SINE MIR -63 145 57 1930 128 10 13 chr11 17332777 17333090 -131450382 - AluSx SINE Alu 0 312 1 1100 145 0 11 chr11 17333423 17333602 -131449870 - FRAM SINE Alu -1 175 1 599 258 0 15 chr11 17333958 17334090 -131449382 + FRAM SINE Alu 1 130 -46 670 147 0 53 chr11 17334093 17334283 -131449189 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 411 172 224 82 chr11 17334337 17334399 -131449073 + MER5A DNA MER1_type 9 61 -128 2136 114 0 0 chr11 17334399 17334697 -131448775 + AluSx SINE Alu 1 298 -14 411 172 224 82 chr11 17334697 17334768 -131448704 + MER5A DNA MER1_type 61 161 -28 2082 132 9 107 chr11 17334781 17334953 -131448519 - MLT1B LTR MaLR 0 390 203 1965 146 0 3 chr11 17334953 17335261 -131448211 - AluJb SINE Alu 0 312 6 2082 132 9 107 chr11 17335261 17335520 -131447952 - MLT1B LTR MaLR -187 203 1 1985 121 0 3 chr11 17335976 17336274 -131447198 - AluSx SINE Alu -2 310 14 628 269 94 0 chr11 17336319 17336479 -131446993 - MIR SINE MIR -84 178 4 201 239 0 0 chr11 17336596 17336642 -131446830 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2109 109 0 0 chr11 17337023 17337347 -131446125 + AluSx SINE Alu 1 324 0 1086 138 0 0 chr11 17337532 17337699 -131445773 + AluSg/x SINE Alu 140 306 -6 524 161 0 0 chr11 17337819 17337906 -131445566 - AluJ/FRAM SINE Alu 0 312 226 315 196 0 0 chr11 17337906 17337952 -131445520 - Alu SINE Alu -254 47 2 2053 107 3 3 chr11 17337962 17338262 -131445210 - AluSx SINE Alu -12 300 1 369 280 76 0 chr11 17338324 17338442 -131445030 - L2 LINE L2 -2 3311 3185 234 273 36 0 chr11 17338532 17338587 -131444885 - L2 LINE L2 -16 3256 3200 2201 98 3 7 chr11 17339581 17339886 -131443586 + AluSx SINE Alu 1 304 -8 1191 181 16 20 chr11 17340029 17340283 -131443189 - AluJo SINE Alu -31 281 29 1596 176 7 3 chr11 17340300 17340595 -131442877 - AluJb SINE Alu -16 296 1 210 164 18 36 chr11 17340662 17340717 -131442755 + A-rich Low_complexity Low_complexity 2 55 0 2163 103 7 3 chr11 17340968 17341268 -131442204 + AluSx SINE Alu 1 301 -11 4704 124 12 20 chr11 17341269 17342021 -131441451 - L1MB3 LINE L1 -11 6172 5427 478 219 73 63 chr11 17342024 17342229 -131441243 - HAL1 LINE L1 -1 2506 2300 1978 133 0 0 chr11 17342240 17342526 -131440946 - AluSx SINE Alu -26 286 1 1175 173 0 0 chr11 17342528 17342725 -131440747 - AluSg/x SINE Alu -12 298 102 409 123 0 0 chr11 17342725 17342782 -131440690 - AluS SINE Alu -260 58 2 759 239 163 45 chr11 17342786 17343038 -131440434 - HAL1 LINE L1 -188 2319 2098 2218 112 0 3 chr11 17343038 17343352 -131440120 - AluSq SINE Alu 0 313 1 759 239 163 45 chr11 17343352 17343547 -131439925 - HAL1 LINE L1 -409 2098 1819 602 235 113 89 chr11 17343778 17343923 -131439549 - L1ME4a LINE L1 -29 6092 5952 213 39 0 0 chr11 17343923 17343949 -131439523 + (TG)n Simple_repeat Simple_repeat 2 27 0 602 235 113 89 chr11 17343949 17343987 -131439485 - L1ME4a LINE L1 -169 5952 5916 1845 117 71 0 chr11 17343987 17344270 -131439202 - AluSx SINE Alu -9 303 1 1631 190 0 13 chr11 17344270 17344570 -131438902 - AluJo SINE Alu -16 296 1 602 235 113 89 chr11 17344570 17344783 -131438689 - L1ME4a LINE L1 -205 5916 5710 1703 112 84 3 chr11 17344783 17345068 -131438404 - AluSg SINE Alu -2 308 1 2184 111 0 10 chr11 17345073 17345380 -131438092 - AluSx SINE Alu -8 304 1 602 235 113 89 chr11 17345380 17345477 -131437995 - L1ME4a LINE L1 -414 5707 5578 1671 160 0 40 chr11 17346076 17346401 -131437071 + AluJo SINE Alu 1 312 0 1783 166 0 0 chr11 17346415 17346710 -131436762 + AluJb SINE Alu 1 295 -17 1096 199 89 35 chr11 17346711 17346993 -131436479 - MER63B DNA MER1_type -136 300 4 679 180 96 71 chr11 17347073 17347105 -131436367 - L1MC5 LINE L1 -22 7939 7909 2103 118 0 0 chr11 17347105 17347411 -131436061 + AluY SINE Alu 1 306 -5 679 180 96 71 chr11 17347411 17347617 -131435855 - L1MC5 LINE L1 -52 7909 7695 1879 125 17 3 chr11 17347635 17347931 -131435541 + AluSx SINE Alu 1 300 -12 2345 74 0 3 chr11 17348178 17348477 -131434995 + AluSp SINE Alu 2 299 -14 745 311 139 33 chr11 17348494 17348649 -131434823 - L2 LINE L2 0 3313 3176 297 0 0 0 chr11 17348649 17348682 -131434790 + (CA)n Simple_repeat Simple_repeat 2 34 0 745 311 139 33 chr11 17348682 17349028 -131434444 - L2 LINE L2 -137 3176 2868 2431 78 0 0 chr11 17349028 17349334 -131434138 - AluSg SINE Alu -3 307 2 745 311 139 33 chr11 17349334 17349653 -131433819 - L2 LINE L2 -445 2868 2395 674 312 78 53 chr11 17349662 17350098 -131433374 - LTR16A LTR ERVL -3 447 1 2118 86 4 4 chr11 17350152 17350432 -131433040 + AluSx SINE Alu 1 280 -32 271 274 118 54 chr11 17350471 17350657 -131432815 - L2 LINE L2 -947 2367 2170 484 260 9 60 chr11 17350690 17350853 -131432619 + MER20B DNA MER1_type 43 201 -18 864 281 83 56 chr11 17350879 17351137 -131432335 - L2 LINE L2 -1157 2157 1907 1171 220 13 66 chr11 17351137 17351455 -131432017 + AluJo SINE Alu 2 302 0 864 281 83 56 chr11 17351455 17351479 -131431993 - L2 LINE L2 -1407 1907 1885 2190 92 0 0 chr11 17351479 17351772 -131431700 + AluSg1 SINE Alu 1 293 -16 864 281 83 56 chr11 17351772 17351933 -131431539 - L2 LINE L2 -1429 1885 1701 337 274 154 34 chr11 17352068 17352302 -131431170 - L2 LINE L2 -1611 1703 1442 269 279 138 100 chr11 17352307 17352547 -131430925 + MLT1L LTR MaLR 3 251 -364 1394 114 10 0 chr11 17352726 17352927 -131430545 - AluSq SINE Alu -110 203 1 950 174 23 55 chr11 17352936 17353155 -131430317 - AluJo SINE Alu -6 306 95 794 189 7 34 chr11 17353157 17353305 -131430167 - AluJo SINE Alu -167 145 2 2264 71 3 3 chr11 17353481 17353775 -131429697 - AluY SINE Alu -6 305 12 221 304 0 0 chr11 17353778 17353834 -131429638 + MER5A DNA MER1_type 128 183 -6 669 170 123 137 chr11 17353938 17354150 -131429322 - MER58A DNA MER1_type -15 209 1 198 0 0 0 chr11 17354167 17354189 -131429283 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1915 115 54 0 chr11 17354275 17354554 -131428918 - AluSg SINE Alu -16 294 1 279 0 0 0 chr11 17355015 17355046 -131428426 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2137 110 0 16 chr11 17355058 17355376 -131428096 - AluSq SINE Alu 0 313 1 255 191 202 12 chr11 17355380 17355464 -131428008 - MIR SINE MIR -46 216 117 816 275 47 17 chr11 17355478 17355714 -131427758 - MIR SINE MIR -11 251 9 2033 124 3 7 chr11 17355944 17356266 -131427206 - AluSx SINE Alu 0 321 1 2292 92 0 13 chr11 17356583 17356898 -131426574 - AluSx SINE Alu -1 311 1 4711 99 6 4 chr11 17356918 17357583 -131425889 - L1PB2 LINE L1 -3 6148 5480 2024 128 7 0 chr11 17357583 17357888 -131425584 - AluSx SINE Alu -5 307 1 4711 99 6 4 chr11 17357888 17357900 -131425572 - L1PB2 LINE L1 -671 5480 5470 1223 142 8 56 chr11 17357900 17357964 -131425508 - L1PB2 LINE L1 -1334 4812 4746 2410 71 0 0 chr11 17357964 17358261 -131425211 - AluSq SINE Alu -15 298 2 1223 142 8 56 chr11 17358261 17358464 -131425008 - L1PB2 LINE L1 -1400 4746 4558 2087 254 78 19 chr11 17358483 17359177 -131424295 - L1PBa LINE L1 -6002 861 127 858 144 8 0 chr11 17359220 17359345 -131424127 + FLAM_C SINE Alu 1 126 -7 1003 154 0 35 chr11 17359469 17359613 -131423859 - 7SLRNA srpRNA srpRNA -23 297 158 2653 159 29 35 chr11 17359613 17359882 -131423590 + MER66B LTR ERV1 1 267 -219 2119 152 3 0 chr11 17359882 17360192 -131423280 + AluSx SINE Alu 1 311 -1 2653 159 29 35 chr11 17360192 17360411 -131423061 + MER66B LTR ERV1 267 486 0 1003 154 0 35 chr11 17360411 17360435 -131423037 - 7SLRNA srpRNA srpRNA -162 158 135 260 130 0 0 chr11 17360436 17360490 -131422982 - AluSp/q SINE Alu -1 302 249 1710 174 24 10 chr11 17360579 17360873 -131422599 + AluJb SINE Alu 1 298 -14 252 157 0 78 chr11 17360876 17360927 -131422545 + MIR SINE MIR 31 77 -131 466 281 148 10 chr11 17360933 17361129 -131422343 - MIR SINE MIR -3 259 37 948 173 59 170 chr11 17361196 17361537 -131421935 - AluSx SINE Alu -9 303 1 231 227 144 41 chr11 17361538 17361635 -131421837 - MIR SINE MIR -40 222 116 347 135 0 14 chr11 17361684 17361752 -131421720 + MIR3 SINE MIR 96 161 -47 312 338 161 39 chr11 17362265 17362730 -131420742 - L1M2 LINE L1 -5768 1081 560 201 147 0 0 chr11 17363096 17363130 -131420342 + (GA)n Simple_repeat Simple_repeat 1 34 0 2357 92 0 3 chr11 17363778 17364082 -131419390 - AluSx SINE Alu -7 305 3 2308 100 3 0 chr11 17364518 17364817 -131418655 + AluSq SINE Alu 1 300 -13 200 285 150 46 chr11 17364908 17365039 -131418433 + MIR3 SINE MIR 14 160 -48 680 180 25 0 chr11 17365041 17365163 -131418309 - Tigger7 DNA MER2_type 0 2487 2363 288 156 104 0 chr11 17365151 17365228 -131418244 - Tigger7 DNA MER2_type -168 2419 2335 * 349 172 0 0 chr11 17365223 17365281 -131418191 - Tigger7 DNA MER2_type -281 58 1 2100 129 0 23 chr11 17365387 17365697 -131417775 - AluJo SINE Alu -9 303 1 1859 176 0 3 chr11 17366362 17366669 -131416803 + AluJb SINE Alu 1 306 -6 1813 159 43 10 chr11 17366722 17367024 -131416448 - AluJb SINE Alu 0 312 1 399 282 101 20 chr11 17367113 17367262 -131416210 - MIR SINE MIR -7 255 95 336 64 0 0 chr11 17367815 17367862 -131415610 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2097 142 0 7 chr11 17367863 17368165 -131415307 - AluSx SINE Alu -12 300 1 29 0 0 0 chr11 17368357 17368386 -131415086 + AT_rich Low_complexity Low_complexity 1 29 0 357 219 112 4 chr11 17368418 17368540 -131414932 + MIR SINE MIR 20 164 -58 498 266 71 63 chr11 17368623 17369040 -131414432 - MLT1J LTR MaLR -36 475 3 195 217 0 22 chr11 17369315 17369361 -131414111 - MIR SINE MIR 0 262 218 1984 125 38 0 chr11 17369635 17369922 -131413550 - AluSx SINE Alu -14 298 1 365 314 74 41 chr11 17370475 17370596 -131412876 + L2 LINE L2 3136 3260 -12 216 0 0 0 chr11 17370624 17370648 -131412824 + (CATA)n Simple_repeat Simple_repeat 2 25 0 2518 47 0 50 chr11 17370751 17370898 -131412574 + AluY SINE Alu 1 125 -186 2295 83 0 17 chr11 17370898 17371200 -131412272 + AluSc SINE Alu 1 297 -12 2518 47 0 50 chr11 17371200 17371372 -131412100 + AluY SINE Alu 125 304 -7 297 0 0 0 chr11 17371540 17371573 -131411899 + (CA)n Simple_repeat Simple_repeat 2 34 0 1852 156 0 10 chr11 17371646 17371941 -131411531 - AluJb SINE Alu -19 293 2 1107 189 9 32 chr11 17372733 17372950 -131410522 + AluJb SINE Alu 84 295 -17 2205 135 0 3 chr11 17372995 17373298 -131410174 + AluSx SINE Alu 1 302 -10 2163 124 7 0 chr11 17373323 17373622 -131409850 + AluSx SINE Alu 1 301 -11 769 248 105 6 chr11 17373634 17373948 -131409524 + HsTC2 DNA Tc2 1536 1880 -18 840 189 0 0 chr11 17373965 17374097 -131409375 - FRAM SINE Alu -44 132 1 2168 118 6 19 chr11 17374132 17374469 -131409003 - AluSx SINE Alu 0 333 1 729 0 0 0 chr11 17374495 17374576 -131408896 + (CA)n Simple_repeat Simple_repeat 2 82 0 2162 124 3 3 chr11 17374584 17374882 -131408590 - AluSx SINE Alu -14 298 1 3396 231 120 24 chr11 17374901 17376050 -131407422 - HsTC2 DNA Tc2 -569 1329 71 839 181 0 0 chr11 17376051 17376184 -131407288 + FLAM_C SINE Alu 1 133 0 331 298 81 0 chr11 17376278 17376402 -131407070 + L1M4 LINE L1 2477 2610 -3536 1384 178 3 21 chr11 17376533 17376820 -131406652 - L1MB7 LINE L1 -19 6165 5884 2408 100 3 0 chr11 17376889 17377200 -131406272 + AluSx SINE Alu 1 312 0 331 326 10 3 chr11 17377806 17377913 -131405559 - MIR SINE MIR -67 141 36 1063 180 11 16 chr11 17378075 17378264 -131405208 - MER5A DNA MER1_type 0 189 2 660 276 89 22 chr11 17378275 17378500 -131404972 + MIR SINE MIR 23 262 0 2387 97 0 0 chr11 17378612 17378912 -131404560 + AluSx SINE Alu 1 300 -12 3420 166 25 5 chr11 17379030 17379700 -131403772 + L1MB7 LINE L1 5485 6168 -16 478 275 105 53 chr11 17379860 17380031 -131403441 - MER5A DNA MER1_type -1 188 9 282 102 85 0 chr11 17380058 17380117 -131403355 + L1MB8 LINE L1 6115 6178 0 198 0 0 0 chr11 17380318 17380340 -131403132 + (A)n Simple_repeat Simple_repeat 1 22 0 2108 99 3 3 chr11 17380404 17380710 -131402762 + AluSp SINE Alu 1 306 0 184 243 0 19 chr11 17381108 17381211 -131402261 + (AAATG)n Simple_repeat Simple_repeat 5 105 0 756 195 0 0 chr11 17381897 17382020 -131401452 - FLAM_A SINE Alu -10 123 1 244 351 135 62 chr11 17382022 17382525 -131400947 - L2 LINE L2 -15 3257 2725 2389 94 0 0 chr11 17383442 17383740 -131399732 + AluSg SINE Alu 3 300 -10 624 183 79 0 chr11 17383744 17383870 -131399602 + AluJo SINE Alu 1 136 -176 23 0 0 0 chr11 17383870 17383893 -131399579 + AT_rich Low_complexity Low_complexity 1 23 0 1785 181 0 20 chr11 17383921 17384225 -131399247 + AluJo SINE Alu 1 298 -14 2146 145 0 0 chr11 17384326 17384636 -131398836 - AluSx SINE Alu -2 310 1 222 330 0 75 chr11 17384729 17384835 -131398637 + L2 LINE L2 1858 1955 -1359 550 214 137 0 chr11 17384867 17384998 -131398474 - MER5A DNA MER1_type -40 149 1 1351 126 0 0 chr11 17385259 17385434 -131398038 + AluJo SINE Alu 1 175 -137 22 35 0 0 chr11 17385563 17385592 -131397880 + AT_rich Low_complexity Low_complexity 1 29 0 1722 178 34 10 chr11 17385850 17386148 -131397324 - AluJo SINE Alu -7 305 1 1339 160 0 73 chr11 17386507 17386694 -131396778 - AluJo SINE Alu -1 311 149 2567 50 3 0 chr11 17386694 17386993 -131396479 - AluY SINE Alu -11 300 1 1339 160 0 73 chr11 17386993 17387080 -131396392 - AluJo SINE Alu -163 149 57 241 318 18 0 chr11 17387284 17387394 -131396078 + L1M4 LINE L1 3776 3887 -2259 2330 106 3 0 chr11 17387559 17387862 -131395610 + AluSx SINE Alu 2 305 -7 360 295 62 20 chr11 17387867 17388111 -131395361 + L1M4 LINE L1 3885 4138 -2008 37 0 0 0 chr11 17388115 17388152 -131395320 + AT_rich Low_complexity Low_complexity 1 37 0 2014 126 3 7 chr11 17388152 17388445 -131395027 - AluSx SINE Alu -17 295 4 489 318 23 37 chr11 17388446 17388927 -131394545 + L1M4 LINE L1 4131 4604 -1542 2300 121 0 0 chr11 17388996 17389301 -131394171 + AluSx SINE Alu 1 305 -7 258 292 28 42 chr11 17389412 17389563 -131393909 + L1P LINE L1 4745 4891 -1255 1753 176 3 19 chr11 17389563 17389876 -131393596 - AluJo SINE Alu 0 312 5 258 292 28 42 chr11 17389876 17390018 -131393454 + L1P LINE L1 4891 5034 -1112 305 217 0 0 chr11 17390096 17390156 -131393316 - L1MC4 LINE L1 -1061 6981 6922 509 264 64 8 chr11 17390218 17390343 -131393129 - MER5A DNA MER1_type -1 188 57 2239 103 20 3 chr11 17390589 17390891 -131392581 + AluSx SINE Alu 1 307 -5 832 143 0 15 chr11 17391025 17391158 -131392314 - FLAM_C SINE Alu -2 131 1 690 157 0 50 chr11 17391292 17391413 -131392059 - FLAM_C SINE Alu -17 116 2 1653 233 119 25 chr11 17391413 17391976 -131391496 - L1MC4 LINE L1 -1819 5989 5374 1342 267 22 11 chr11 17392090 17392547 -131390925 - L1MC4 LINE L1 -1127 6915 6454 1920 157 0 23 chr11 17392986 17393285 -131390187 + AluJb SINE Alu 1 292 -20 895 201 211 4 chr11 17393793 17394072 -131389400 + MER46C DNA MER2_type 1 337 -1 2066 107 10 32 chr11 17394309 17394617 -131388855 + AluSq SINE Alu 2 302 -11 1090 147 9 65 chr11 17396184 17396359 -131387113 - AluJo SINE Alu -8 304 121 2193 90 3 40 chr11 17396359 17396659 -131386813 - AluSx SINE Alu -14 298 10 2257 103 0 13 chr11 17396662 17396964 -131386508 - AluSx SINE Alu -14 298 1 1090 147 9 65 chr11 17396964 17397016 -131386456 - AluJo SINE Alu -193 119 86 301 148 19 0 chr11 17397017 17397071 -131386401 - AluJo SINE Alu -162 140 86 2067 140 0 0 chr11 17397201 17397487 -131385985 + AluSx SINE Alu 1 286 -26 1778 288 172 21 chr11 17397598 17398556 -131384916 + L2 LINE L2 1927 3029 -284 2315 89 0 7 chr11 17399900 17400221 -131383251 - AluSg1 SINE Alu 0 309 1 596 294 43 48 chr11 17400251 17400649 -131382823 - L1ME4a LINE L1 -207 5914 5519 25 31 0 0 chr11 17400733 17400765 -131382707 + AT_rich Low_complexity Low_complexity 1 32 0 446 259 18 9 chr11 17400786 17400898 -131382574 + MER81 DNA DNA 2 114 0 364 177 175 3 chr11 17401052 17401169 -131382303 - L1MC4 LINE L1 -5 9456 9320 188 111 28 0 chr11 17401228 17401264 -131382208 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 793 248 131 0 chr11 17401274 17401556 -131381916 - L1MC4 LINE L1 -124 9337 9019 699 184 86 6 chr11 17401592 17401755 -131381717 - L1MC4a LINE L1 -424 8803 8628 669 143 103 24 chr11 17401788 17401914 -131381558 - FLAM_C SINE Alu -5 138 3 1748 141 0 97 chr11 17401926 17402266 -131381206 - AluSx SINE Alu -3 309 3 253 292 45 39 chr11 17402360 17402538 -131380934 - L1ME LINE L1 -348 5773 5595 916 206 30 0 chr11 17402543 17402742 -131380730 + L1MC4 LINE L1 6870 7074 -968 790 159 48 0 chr11 17402847 17402973 -131380499 + FLAM_A SINE Alu 1 132 -1 19136 163 51 31 chr11 17403019 17403671 -131379801 - L1MA2 LINE L1 -10 7713 7076 3069 93 4 35 chr11 17403671 17404156 -131379316 - L1PA13 LINE L1 -4 6159 5690 19136 163 51 31 chr11 17404156 17404341 -131379131 - L1MA2 LINE L1 -647 7076 6896 2028 113 50 0 chr11 17404341 17404623 -131378849 + AluSx SINE Alu 1 296 -16 19136 163 51 31 chr11 17404623 17408377 -131375095 - L1MA2 LINE L1 -827 6896 3220 2098 146 0 10 chr11 17408377 17408685 -131374787 - AluSx SINE Alu -7 305 1 19136 163 51 31 chr11 17408685 17408719 -131374753 - L1MA2 LINE L1 -4503 3220 3188 331 87 0 0 chr11 17408719 17408765 -131374707 + (TTTA)n Simple_repeat Simple_repeat 2 108 0 2164 105 3 7 chr11 17408765 17409050 -131374422 - AluSx SINE Alu -28 284 1 19136 163 51 31 chr11 17409050 17409933 -131373539 - L1MA2 LINE L1 -4535 3188 2324 2239 121 3 6 chr11 17409933 17410247 -131373225 - AluSp SINE Alu 0 313 1 19136 163 51 31 chr11 17410247 17410259 -131373213 - L1MA2 LINE L1 -5399 2324 2314 2497 81 0 3 chr11 17410259 17410567 -131372905 - AluSp SINE Alu -6 307 1 19136 163 51 31 chr11 17410567 17411026 -131372446 - L1MA2 LINE L1 -5409 2314 1866 1806 180 0 0 chr11 17411026 17411309 -131372163 - AluSx SINE Alu -29 283 1 19136 163 51 31 chr11 17411309 17413772 -131369700 - L1MA2 LINE L1 -5857 1866 66 421 218 23 52 chr11 17413822 17413996 -131369476 - L1MC4a LINE L1 -1758 6050 5882 249 33 0 0 chr11 17414413 17414443 -131369029 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1679 177 0 0 chr11 17414451 17414717 -131368755 - AluJo SINE Alu -46 266 1 939 231 201 51 chr11 17415960 17416389 -131367083 - MLT1J LTR MaLR -2 509 17 1779 162 18 14 chr11 17416672 17416956 -131366516 - AluJo SINE Alu -23 289 5 594 288 133 39 chr11 17418088 17418494 -131364978 - LTR67 LTR ERVL 0 557 114 236 167 0 0 chr11 17418469 17418505 -131364967 - MLT1J LTR MaLR -377 134 99 * 2262 125 0 0 chr11 17418552 17418849 -131364623 + AluSx SINE Alu 1 297 -15 2288 105 0 0 chr11 17419452 17419747 -131363725 - AluSg SINE Alu -15 295 1 413 127 0 0 chr11 17419953 17420016 -131363456 - MER46A DNA MER2_type -1 235 173 1275 121 0 6 chr11 17420016 17420190 -131363282 - AluSx SINE Alu -139 173 1 605 213 12 31 chr11 17420190 17420350 -131363122 - MER46A DNA MER2_type -79 157 1 2759 7 0 0 chr11 17420438 17420731 -131362741 + AluY SINE Alu 19 311 0 24 32 0 0 chr11 17420847 17420878 -131362594 + AT_rich Low_complexity Low_complexity 1 31 0 1867 181 0 0 chr11 17420888 17421186 -131362286 - AluJo SINE Alu -14 298 1 1959 120 40 7 chr11 17421578 17421880 -131361592 - AluSq SINE Alu 0 311 1 21 0 0 0 chr11 17421942 17421963 -131361509 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 17422209 17422230 -131361242 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr11 17422470 17422504 -131360968 + AT_rich Low_complexity Low_complexity 1 34 0 2341 116 0 0 chr11 17422598 17422909 -131360563 - AluSx SINE Alu -1 311 1 2117 139 0 0 chr11 17422924 17423233 -131360239 - AluSx SINE Alu -3 309 1 26806 26 11 0 chr11 17423301 17427239 -131356233 - L1PA4 LINE L1 -5 6150 2171 2332 82 0 0 chr11 17429372 17429665 -131353807 + AluSg SINE Alu 1 293 -17 21 82 0 0 chr11 17429952 17430001 -131353471 + AT_rich Low_complexity Low_complexity 1 49 0 376 226 174 0 chr11 17430072 17430187 -131353285 - L3 LINE CR1 -3 1574 1440 455 173 8 12 chr11 17430204 17430319 -131353153 - MER5B DNA MER1_type 0 178 1 1028 201 62 25 chr11 17430594 17430838 -131352634 - L1MC4a LINE L1 -8 7800 7548 1788 123 147 72 chr11 17430890 17431264 -131352208 - MER4A LTR ERV1 0 664 263 424 153 94 12 chr11 17431279 17431364 -131352108 - MER4A LTR ERV1 -572 92 1 1499 204 67 15 chr11 17431378 17431784 -131351688 - L1MC4 LINE L1 -108 7934 7508 633 176 157 19 chr11 17431796 17432006 -131351466 + MER5C DNA MER1_type 9 247 -77 186 43 0 0 chr11 17432035 17432058 -131351414 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 506 165 136 0 chr11 17432077 17432180 -131351292 - FLAM_C SINE Alu -25 118 2 1945 159 3 19 chr11 17432267 17432582 -131350890 - AluJb SINE Alu -2 310 1 2408 92 0 3 chr11 17432718 17433022 -131350450 - AluSq SINE Alu -9 304 2 259 287 142 64 chr11 17433022 17433203 -131350269 - L3 LINE CR1 -193 1384 1170 1733 253 62 12 chr11 17433203 17433690 -131349782 - MLT1J LTR MaLR 0 511 1 259 287 142 64 chr11 17433690 17433804 -131349668 - L3 LINE CR1 -407 1170 1066 2466 81 0 25 chr11 17434029 17434349 -131349123 + AluSx SINE Alu 1 312 0 198 342 113 8 chr11 17434906 17435046 -131348426 - MIR SINE MIR -58 150 18 2466 62 16 0 chr11 17436112 17436418 -131347054 - AluY SINE Alu 0 311 1 239 261 54 11 chr11 17436814 17436906 -131346566 + L1MC/D LINE L1 5379 5474 -2311 23 33 0 0 chr11 17437486 17437516 -131345956 + GC_rich Low_complexity Low_complexity 1 30 0 270 81 0 0 chr11 17438480 17438517 -131344955 + (T)n Simple_repeat Simple_repeat 1 37 0 532 196 36 102 chr11 17439025 17439061 -131344411 + L1M4 LINE L1 4338 4375 -1771 1941 153 10 13 chr11 17439061 17439374 -131344098 + AluJo SINE Alu 1 312 0 532 196 36 102 chr11 17439374 17439519 -131343953 + L1M4 LINE L1 4375 4528 -1618 1395 170 43 117 chr11 17439519 17439731 -131343741 - MLT1A1 LTR MaLR 0 365 139 1628 192 0 11 chr11 17439731 17440044 -131343428 - AluJo SINE Alu 0 310 1 1395 170 43 117 chr11 17440044 17440069 -131343403 - MLT1A1 LTR MaLR -226 139 114 2382 103 0 3 chr11 17440069 17440380 -131343092 - AluSg SINE Alu 0 310 1 1395 170 43 117 chr11 17440380 17440534 -131342938 - MLT1A1 LTR MaLR -251 114 1 532 196 36 102 chr11 17440534 17440576 -131342896 + L1M4 LINE L1 4528 4547 -1599 2406 122 37 19 chr11 17441078 17441456 -131342016 - MLT1B LTR MaLR 0 390 6 1606 173 18 0 chr11 17441667 17441944 -131341528 - AluJo SINE Alu -30 282 1 5496 127 123 136 chr11 17441966 17442534 -131340938 - L1MC3 LINE L1 -8 7777 7203 287 235 10 39 chr11 17442534 17442636 -131340836 - MLT1F1 LTR MaLR -443 124 26 5496 127 123 136 chr11 17442636 17443443 -131340029 - L1MC3 LINE L1 -582 7203 6321 2310 110 7 13 chr11 17443443 17443753 -131339719 - AluSx SINE Alu -4 308 1 4265 197 82 107 chr11 17443755 17443893 -131339579 - L1MC/D LINE L1 -755 6186 6046 1473 150 53 9 chr11 17443893 17444119 -131339353 - AluJb SINE Alu -48 264 29 4265 197 82 107 chr11 17444119 17444720 -131338752 - L1MC/D LINE L1 -895 6046 5431 1513 178 4 4 chr11 17444720 17444978 -131338494 - AluJb SINE Alu -54 258 1 4265 197 82 107 chr11 17444978 17445231 -131338241 - L1MC/D LINE L1 -1510 5431 5173 2339 98 10 0 chr11 17445231 17445526 -131337946 - AluSx SINE Alu -14 298 1 4265 197 82 107 chr11 17445526 17445759 -131337713 - L1MC/D LINE L1 -1768 5173 4936 870 148 0 8 chr11 17445759 17445887 -131337585 - FLAM_C SINE Alu -16 127 1 4265 197 82 107 chr11 17445887 17446574 -131336898 - L1MC/D LINE L1 -2005 4936 4287 1189 78 11 6 chr11 17446620 17446626 -131336846 + (TTTC)n Simple_repeat Simple_repeat 1 186 0 1189 78 11 6 chr11 17446626 17446805 -131336667 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4065 214 78 59 chr11 17446860 17446888 -131336584 - L1MCc LINE L1 -4501 2440 2414 1621 152 14 25 chr11 17446888 17447165 -131336307 - AluJb SINE Alu -38 274 1 4065 214 78 59 chr11 17447165 17447520 -131335952 - L1MCc LINE L1 -4527 2414 2067 1838 176 0 19 chr11 17447520 17447838 -131335634 - AluJb SINE Alu 0 312 1 4065 214 78 59 chr11 17447838 17448133 -131335339 - L1MCc LINE L1 -4874 2067 1779 1802 158 3 17 chr11 17448133 17448430 -131335042 - AluSx SINE Alu -14 298 6 4065 214 78 59 chr11 17448430 17448490 -131334982 - L1MCc LINE L1 -5162 1779 1722 2327 101 3 0 chr11 17448490 17448787 -131334685 - AluSp SINE Alu -15 298 1 4065 214 78 59 chr11 17448787 17450010 -131333462 - L1MCc LINE L1 -5219 1722 58 1166 248 89 64 chr11 17450017 17450489 -131332983 - MLT1J LTR MaLR -27 484 1 2422 84 3 0 chr11 17451763 17452059 -131331413 - AluSp SINE Alu -16 297 1 982 164 1 33 chr11 17452918 17453105 -131330367 + LTR25-int LTR ERV1 103 304 -6692 3495 109 87 17 chr11 17453783 17454315 -131329157 + MER61E LTR ERV1 1 569 0 26907 189 18 9 chr11 17454315 17460322 -131323150 + HUERS-P3 LTR ERV1 3 5912 -3007 14045 104 7 12 chr11 17460323 17461138 -131322334 + HUERS-P3 LTR ERV1 6938 7756 -1163 1858 143 0 35 chr11 17461138 17461452 -131322020 + AluSg SINE Alu 1 303 -7 14045 104 7 12 chr11 17461452 17462629 -131320843 + HUERS-P3 LTR ERV1 7756 8919 0 3946 121 12 23 chr11 17462629 17463200 -131320272 + MER61E LTR ERV1 1 565 -4 623 306 161 28 chr11 17463295 17463586 -131319886 + MLT1H LTR MaLR 10 339 -210 27 73 0 0 chr11 17463667 17463722 -131319750 + AT_rich Low_complexity Low_complexity 1 55 0 693 299 65 67 chr11 17463805 17464078 -131319394 + LTR16B LTR ERVL 1 274 -190 3045 185 38 9 chr11 17464078 17464412 -131319060 + MER6A DNA MER2_type 5 365 -500 1804 160 0 28 chr11 17464412 17464731 -131318741 - AluJo SINE Alu -2 310 1 3045 185 38 9 chr11 17464731 17464980 -131318492 + MER6A DNA MER2_type 365 605 0 693 299 65 67 chr11 17464980 17465171 -131318301 + LTR16B LTR ERVL 274 464 0 431 266 34 41 chr11 17467079 17467183 -131316289 + MIR SINE MIR 3 107 -130 2013 160 86 3 chr11 17467183 17467520 -131315952 + MLT1A1 LTR MaLR 1 365 0 431 266 34 41 chr11 17467520 17467583 -131315889 + MIR SINE MIR 107 169 -68 290 328 123 56 chr11 17468489 17469086 -131314386 - L2 LINE L2 0 3272 2617 1092 176 94 0 chr11 17469241 17469474 -131313998 - MIR SINE MIR -1 261 7 2444 65 0 0 chr11 17472241 17472547 -131310925 + AluSg SINE Alu 1 306 -4 347 211 21 49 chr11 17473037 17473179 -131310293 + C-rich Low_complexity Low_complexity 6 143 0 199 100 0 40 chr11 17473351 17473401 -131310071 + (TCCCC)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr11 17473781 17473811 -131309661 + (A)n Simple_repeat Simple_repeat 1 30 0 265 326 82 37 chr11 17474421 17474666 -131308806 + L3 LINE CR1 1134 1389 -188 193 321 76 15 chr11 17475107 17475238 -131308234 + L2 LINE L2 2717 2855 -459 821 251 71 10 chr11 17475824 17476213 -131307259 + MLT1K LTR MaLR 143 575 -13 1931 163 48 13 chr11 17476321 17476696 -131306776 + MLT1B LTR MaLR 1 388 -2 199 174 0 29 chr11 17477960 17478029 -131305443 + (TG)n Simple_repeat Simple_repeat 2 68 0 310 215 165 0 chr11 17478918 17478997 -131304475 + MIR3 SINE MIR 73 164 -44 218 226 35 43 chr11 17480316 17480431 -131303041 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 759 321 165 11 chr11 17482586 17482928 -131300544 + L2 LINE L2 2353 2641 -672 2287 94 0 22 chr11 17482928 17483246 -131300226 + AluSx SINE Alu 1 311 -1 759 321 165 11 chr11 17483246 17483721 -131299751 + L2 LINE L2 2641 3313 0 193 224 20 0 chr11 17484476 17484525 -131298947 + MIR SINE MIR 113 162 -100 721 294 22 1 chr11 17484611 17484833 -131298639 + MIR SINE MIR 22 249 -13 241 345 54 34 chr11 17484826 17484974 -131298498 + L3 LINE CR1 743 893 -684 * 243 340 20 0 chr11 17485166 17485266 -131298206 + L3 LINE CR1 1181 1282 -295 543 323 105 33 chr11 17485812 17486088 -131297384 + L2 LINE L2 2977 3272 0 426 304 29 41 chr11 17486102 17486273 -131297199 + MIR SINE MIR 80 248 -14 495 282 87 15 chr11 17486720 17486915 -131296557 + MIR SINE MIR 17 225 -37 904 237 88 0 chr11 17487597 17487825 -131295647 + MER112 DNA MER1_type 13 260 0 345 292 17 8 chr11 17488124 17488244 -131295228 + L1ME LINE L1 5547 5667 -454 1929 142 10 10 chr11 17488697 17489006 -131294466 - AluSq SINE Alu -4 309 1 200 363 38 0 chr11 17490311 17490391 -131293081 + MIR SINE MIR 158 240 -22 365 281 79 0 chr11 17490426 17490540 -131292932 - MIR SINE MIR -56 206 84 205 290 29 0 chr11 17491138 17491207 -131292265 - MIR SINE MIR -113 149 79 2186 206 45 54 chr11 17491558 17492115 -131291357 + MLT1K LTR MaLR 32 583 -5 1986 121 3 13 chr11 17492892 17493198 -131290274 - AluJb SINE Alu -9 303 1 860 189 25 61 chr11 17493810 17494006 -131289466 - AluJo SINE Alu 0 312 124 379 221 26 0 chr11 17494708 17494785 -131288687 + MIR SINE MIR 74 152 -56 323 288 127 65 chr11 17494976 17495299 -131288173 + L2 LINE L2 2921 3263 -9 214 344 82 82 chr11 17495532 17495811 -131287661 + L2 LINE L2 2962 3240 -32 770 211 76 22 chr11 17495814 17495830 -131287642 + MER117 DNA MER1_type 2 16 -181 2437 56 3 0 chr11 17495830 17496133 -131287339 - AluY SINE Alu -7 304 1 770 211 76 22 chr11 17496133 17496301 -131287171 + MER117 DNA MER1_type 16 196 -1 713 322 51 4 chr11 17497875 17498111 -131285361 + MIR SINE MIR 8 254 -8 688 204 21 0 chr11 17500452 17500594 -131282878 - L1MB7 LINE L1 -82 6102 5958 551 197 87 8 chr11 17500595 17500722 -131282750 - MER106A DNA MER1_type -70 166 30 190 191 24 0 chr11 17501177 17501219 -131282253 - MIR SINE MIR -65 143 101 426 273 119 4 chr11 17501240 17501467 -131282005 - MER112 DNA MER1_type -7 253 1 670 241 116 37 chr11 17501640 17501689 -131281783 - MIR SINE MIR 0 262 218 180 0 0 0 chr11 17501689 17501709 -131281763 + (TC)n Simple_repeat Simple_repeat 1 20 0 1846 110 0 31 chr11 17501709 17501999 -131281473 - AluJo SINE Alu -31 281 1 670 241 116 37 chr11 17501999 17502189 -131281283 - MIR SINE MIR -43 219 3 351 241 186 22 chr11 17502878 17503044 -131280428 - MIR SINE MIR -40 222 32 398 282 30 23 chr11 17503770 17503901 -131279571 + MIR SINE MIR 53 184 -78 424 308 29 23 chr11 17504176 17504348 -131279124 - MIR SINE MIR -55 207 35 225 289 105 0 chr11 17505148 17505224 -131278248 - L2 LINE L2 -73 3199 3116 221 330 22 33 chr11 17505428 17505519 -131277953 - L2 LINE L2 -56 3216 3127 222 231 294 50 chr11 17505579 17505739 -131277733 - MIR SINE MIR -56 206 8 238 326 130 59 chr11 17506707 17506977 -131276495 + L2 LINE L2 2804 3092 -180 2225 99 3 3 chr11 17507018 17507321 -131276151 + AluSg SINE Alu 1 303 -7 183 320 93 0 chr11 17507332 17507407 -131276065 + L2 LINE L2 3187 3268 -4 661 247 107 0 chr11 17507821 17507999 -131275473 + MIR SINE MIR 47 243 -19 2100 63 18 14 chr11 17508001 17508286 -131275186 + L1PA8 LINE L1 5887 6172 0 541 306 31 0 chr11 17508784 17508944 -131274528 + MIR SINE MIR 95 259 -3 6208 41 0 0 chr11 17509631 17510359 -131273113 - L1PA7 LINE L1 -4 6150 5423 574 298 96 9 chr11 17510628 17510846 -131272626 + MIR SINE MIR 25 261 -1 251 261 90 15 chr11 17512819 17512953 -131270519 + (TTAGGG)n Simple_repeat Simple_repeat 3 146 0 319 360 9 0 chr11 17512962 17513073 -131270399 - MIR SINE MIR -3 259 148 394 301 97 23 chr11 17514309 17514485 -131268987 + L3 LINE CR1 1180 1368 -209 633 266 131 8 chr11 17515629 17515881 -131267591 + L1ME4a LINE L1 5834 6116 -5 373 173 67 0 chr11 17516836 17516911 -131266561 + MIR SINE MIR 56 135 -127 185 340 0 0 chr11 17517621 17517668 -131265804 - L2 LINE L2 -87 3185 3139 378 282 40 8 chr11 17518250 17518374 -131265098 + L1ME LINE L1 5538 5665 -456 24 32 0 0 chr11 17518614 17518645 -131264827 + AT_rich Low_complexity Low_complexity 1 31 0 327 85 0 0 chr11 17518913 17518960 -131264512 + (TG)n Simple_repeat Simple_repeat 2 48 0 2645 64 0 6 chr11 17520748 17521060 -131262412 + AluSq SINE Alu 1 310 -3 2158 124 3 10 chr11 17521758 17522064 -131261408 + AluSx SINE Alu 1 304 -8 232 169 200 31 chr11 17522172 17522237 -131261235 + L2 LINE L2 3197 3272 0 195 293 136 50 chr11 17522302 17522442 -131261030 + L2 LINE L2 3100 3251 -21 246 296 23 11 chr11 17522787 17522875 -131260597 + MIR SINE MIR 102 190 -72 185 325 48 63 chr11 17522958 17523084 -131260388 + L2 LINE L2 3180 3303 -10 348 236 55 27 chr11 17525211 17525321 -131258151 + MIR SINE MIR 31 143 -65 254 273 36 36 chr11 17525335 17525445 -131258027 - L1MEd LINE L1 -5068 1051 942 953 219 83 22 chr11 17525462 17525690 -131257782 - ERVL LTR ERVL -3488 2276 2035 2371 105 0 0 chr11 17525741 17526037 -131257435 + AluSg SINE Alu 1 296 -14 519 307 27 0 chr11 17526331 17526481 -131256991 + L2 LINE L2 3160 3313 0 302 259 35 24 chr11 17526958 17527043 -131256429 - MIR SINE MIR -62 146 61 660 248 50 74 chr11 17528663 17528921 -131254551 + MIR SINE MIR 3 254 -8 215 254 0 0 chr11 17529009 17529064 -131254408 + MIR SINE MIR 68 122 -86 822 128 149 32 chr11 17529237 17529425 -131254047 + L1MB7 LINE L1 5964 6173 -11 2302 122 0 0 chr11 17529904 17530207 -131253265 - AluSx SINE Alu -9 303 1 753 161 0 0 chr11 17530401 17530519 -131252953 - FLAM_A SINE Alu -15 118 1 353 273 71 10 chr11 17530956 17531055 -131252417 - MIR SINE MIR -57 205 101 1112 168 21 133 chr11 17531366 17531705 -131251767 - AluJo SINE Alu 0 302 2 300 254 217 25 chr11 17531778 17532018 -131251454 - L1ME4a LINE L1 -23 6098 5813 753 182 0 0 chr11 17532058 17532190 -131251282 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr11 17532846 17532868 -131250604 + AT_rich Low_complexity Low_complexity 1 22 0 2095 135 7 3 chr11 17532870 17533167 -131250305 - AluSx SINE Alu -14 298 1 1017 72 22 28 chr11 17534175 17534355 -131249117 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2257 60 0 11 chr11 17534358 17534627 -131248845 - AluY SINE Alu -34 277 12 2369 108 0 0 chr11 17534627 17534924 -131248548 - AluSg SINE Alu -9 301 5 211 264 22 44 chr11 17535115 17535206 -131248266 + L3 LINE CR1 1382 1470 -107 392 175 0 0 chr11 17535376 17535439 -131248033 + MER91B DNA MER1_type 1 63 -127 847 291 124 23 chr11 17535646 17536089 -131247383 + MLT1J LTR MaLR 15 502 -9 2207 108 13 0 chr11 17536295 17536600 -131246872 - MER1B DNA MER1_type 0 339 31 350 227 0 0 chr11 17536718 17536784 -131246688 + MER117 DNA MER1_type 79 144 -53 474 239 18 0 chr11 17538602 17538715 -131244757 - MIR SINE MIR -78 184 70 2195 134 3 3 chr11 17539597 17539904 -131243568 + AluSx SINE Alu 1 307 -5 249 311 57 9 chr11 17540250 17540356 -131243116 - MIR SINE MIR -69 139 29 576 259 175 26 chr11 17540577 17540805 -131242667 + MIR SINE MIR 1 262 0 358 289 207 8 chr11 17540802 17541048 -131242424 - L2 LINE L2 0 3272 2978 * 180 111 0 0 chr11 17541203 17541230 -131242242 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 309 134 0 chr11 17541797 17541894 -131241578 + L3b LINE CR1 1339 1448 -135 295 320 20 0 chr11 17542714 17542814 -131240658 + L2 LINE L2 2982 3083 -189 606 228 24 24 chr11 17542948 17543115 -131240357 + MIR SINE MIR 2 168 -94 223 314 67 0 chr11 17543158 17543263 -131240209 + MIR SINE MIR 151 262 0 260 234 31 0 chr11 17543295 17543359 -131240113 + L2 LINE L2 3203 3268 -4 294 225 234 0 chr11 17544761 17544872 -131238600 - MIR3 SINE MIR -2 206 70 327 263 94 32 chr11 17544985 17545144 -131238328 + MIR SINE MIR 20 186 -57 364 202 29 58 chr11 17545242 17545346 -131238126 + MIR3 SINE MIR 100 200 -8 245 349 16 8 chr11 17545340 17545469 -131238003 + MIR3 SINE MIR 50 179 -29 * 383 253 142 31 chr11 17546107 17546275 -131237197 + MIR SINE MIR 30 212 -50 1055 269 84 17 chr11 17546354 17546770 -131236702 + L1ME4a LINE L1 5491 5934 -187 680 285 54 29 chr11 17547829 17548071 -131235401 - MIR SINE MIR -13 249 2 540 285 30 12 chr11 17548077 17548242 -131235230 - MIR3 SINE MIR -11 197 30 672 302 87 12 chr11 17548315 17548557 -131234915 + MIR SINE MIR 2 261 -1 403 314 16 16 chr11 17549267 17549446 -131234026 - MIR SINE MIR -44 218 41 327 325 17 54 chr11 17549587 17549827 -131233645 + L2 LINE L2 2458 2688 -626 2689 142 31 32 chr11 17549829 17550060 -131233412 + L1MB3 LINE L1 5664 5894 -289 2358 106 0 0 chr11 17550060 17550361 -131233111 + AluSg SINE Alu 1 301 -9 2689 142 31 32 chr11 17550361 17550559 -131232913 + L1MB3 LINE L1 5894 6093 -90 1783 124 0 141 chr11 17550559 17550907 -131232565 - AluJb SINE Alu -13 299 1 2689 142 31 32 chr11 17550907 17550980 -131232492 + L1MB3 LINE L1 6093 6165 -18 396 0 0 0 chr11 17550984 17551028 -131232444 + (CA)n Simple_repeat Simple_repeat 1 44 0 1635 152 12 8 chr11 17551082 17551338 -131232134 + AluSx SINE Alu 5 261 -51 370 303 92 5 chr11 17551366 17551551 -131231921 + L2 LINE L2 2856 3056 -257 789 240 42 18 chr11 17552448 17552665 -131230807 + MIR SINE MIR 41 262 0 334 293 57 21 chr11 17552669 17552809 -131230663 + MIR SINE MIR 104 248 -14 215 263 158 32 chr11 17552890 17552985 -131230487 + L2 LINE L2 2101 2207 -1107 408 125 0 0 chr11 17552988 17553052 -131230420 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 2001 131 0 3 chr11 17553053 17553335 -131230137 - AluSx SINE Alu -31 281 1 304 313 121 4 chr11 17553335 17553591 -131229881 + L2 LINE L2 2192 2477 -837 831 269 182 12 chr11 17553596 17554008 -131229464 + L2 LINE L2 2832 3313 0 730 220 60 6 chr11 17554529 17554697 -131228775 - MIR SINE MIR -1 261 85 273 313 65 65 chr11 17555115 17555332 -131228140 - L2 LINE L2 -93 3179 2963 445 291 265 9 chr11 17555471 17555811 -131227661 + MLT1L LTR MaLR 120 546 -69 366 267 9 9 chr11 17555933 17556049 -131227423 - Charlie2a DNA MER1_type -4 2858 2743 * 964 214 71 7 chr11 17556035 17556316 -131227156 - Charlie2a DNA MER1_type -1837 1025 727 252 286 33 0 chr11 17556325 17556416 -131227056 - Charlie2a DNA MER1_type -2453 409 316 418 254 9 0 chr11 17556909 17557019 -131226453 - Charlie2 DNA MER1_type 0 2862 2752 276 228 41 73 chr11 17557029 17557152 -131226320 - MIR3 SINE MIR -85 123 5 1891 155 3 24 chr11 17559170 17559466 -131224006 - AluJo SINE Alu -22 290 1 263 265 43 8 chr11 17560774 17560891 -131222581 + (CCCCG)n Simple_repeat Simple_repeat 2 122 0 205 239 21 141 chr11 17561401 17561543 -131221929 - MIR3 SINE MIR -54 154 30 328 288 0 0 chr11 17562469 17562542 -131220930 - MIR SINE MIR -58 150 78 422 294 56 8 chr11 17562705 17562831 -131220641 + MIR SINE MIR 50 181 -81 250 251 49 50 chr11 17563046 17563138 -131220334 + MIR SINE MIR 21 114 -94 646 91 0 0 chr11 17563759 17563880 -131219592 + AluJb SINE Alu 194 314 0 677 170 0 71 chr11 17564501 17564642 -131218830 - FLAM_C SINE Alu -1 132 2 196 283 0 0 chr11 17565394 17565440 -131218032 - L2 LINE L2 -5 3308 3263 * 460 282 155 17 chr11 17565427 17565608 -131217864 - MIR SINE MIR -44 218 13 422 229 115 83 chr11 17566246 17566403 -131217069 + MIR SINE MIR 22 183 -79 23 33 0 0 chr11 17566492 17566522 -131216950 + AT_rich Low_complexity Low_complexity 1 30 0 308 328 129 5 chr11 17566522 17566708 -131216764 - MIR SINE MIR -13 249 41 5852 94 24 14 chr11 17566867 17567024 -131216448 - L1MA3 LINE L1 -2 6303 6149 2185 111 3 7 chr11 17567024 17567321 -131216151 - AluSx SINE Alu -16 296 1 5852 94 24 14 chr11 17567321 17568055 -131215417 - L1MA3 LINE L1 -156 6149 5403 1967 182 43 3 chr11 17568126 17568477 -131214995 + MLT1A1 LTR MaLR 1 365 0 204 228 18 0 chr11 17568623 17568680 -131214792 + GA-rich Low_complexity Low_complexity 1 58 0 403 293 93 14 chr11 17569171 17569311 -131214161 - MIR SINE MIR -89 173 23 800 164 99 18 chr11 17569313 17569484 -131213988 + MER5A DNA MER1_type 4 188 -1 219 163 0 70 chr11 17569894 17569937 -131213535 - L2 LINE L2 -2 3270 3231 215 285 36 79 chr11 17569986 17570151 -131213321 + L2 LINE L2 2943 3100 -172 2342 165 127 95 chr11 17570492 17570700 -131212772 - LTR68 LTR ERV1 0 740 540 1623 124 16 4 chr11 17570700 17570958 -131212514 + L1MB3 LINE L1 5916 6176 -7 2342 165 127 95 chr11 17570958 17571097 -131212375 - LTR68 LTR ERV1 -200 540 407 5861 68 12 17 chr11 17571097 17571730 -131211742 - L1MA2 LINE L1 0 6304 5674 2268 103 0 17 chr11 17571730 17572031 -131211441 - AluSc SINE Alu -9 300 5 5861 68 12 17 chr11 17572031 17572215 -131211257 - L1MA2 LINE L1 -630 5674 5491 2342 165 127 95 chr11 17572215 17572583 -131210889 - LTR68 LTR ERV1 -333 407 1 454 237 92 8 chr11 17572852 17572983 -131210489 - MIR SINE MIR -35 227 86 290 321 77 17 chr11 17573331 17573484 -131209988 - L1P2 LINE L1 -343 5811 5641 2718 173 32 10 chr11 17573484 17573976 -131209496 - MLT1D LTR MaLR -2 503 1 290 321 77 17 chr11 17573976 17574028 -131209444 - L1P2 LINE L1 -513 5641 5594 739 209 12 0 chr11 17575031 17575194 -131208278 - L1M4 LINE L1 -3118 3028 2864 195 246 138 85 chr11 17577955 17578085 -131205387 + MIR3 SINE MIR 15 151 -57 287 271 21 90 chr11 17578251 17578439 -131205033 + L2 LINE L2 2948 3122 -191 538 188 23 8 chr11 17578531 17578659 -131204813 + MER69 DNA AcHobo 2382 2511 -15 372 182 300 9 chr11 17578678 17578788 -131204684 + L2 LINE L2 3158 3299 -14 193 350 17 0 chr11 17580168 17580228 -131203244 + MIR SINE MIR 89 149 -113 305 331 0 0 chr11 17580300 17580436 -131203036 + (TG)n Simple_repeat Simple_repeat 2 137 0 332 284 40 0 chr11 17581666 17581775 -131201697 + MIR SINE MIR 45 167 -63 270 294 0 24 chr11 17581770 17581855 -131201617 - L2 LINE L2 -5 3308 3226 * 749 262 136 5 chr11 17582922 17583143 -131200329 + MIR SINE MIR 8 257 -5 273 197 0 0 chr11 17583146 17583212 -131200260 + (CAT)n Simple_repeat Simple_repeat 3 68 0 802 174 5 18 chr11 17583219 17583446 -131200026 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 271 245 0 29 chr11 17583431 17583570 -131199902 + (CAT)n Simple_repeat Simple_repeat 1 135 0 * 196 268 141 0 chr11 17583573 17583644 -131199828 - MIR SINE MIR -73 189 109 663 120 0 0 chr11 17584174 17584274 -131199198 - AluSg1 SINE Alu -1 309 210 1152 123 0 12 chr11 17584277 17584440 -131199032 - AluSg1 SINE Alu -148 161 1 355 308 145 36 chr11 17585436 17585657 -131197815 + L1MC4a LINE L1 7114 7358 -450 233 304 32 8 chr11 17585689 17585814 -131197658 + L1MC5 LINE L1 7311 7438 -523 295 246 136 53 chr11 17585965 17586229 -131197243 + L1ME4a LINE L1 5833 6118 -3 549 285 74 22 chr11 17586254 17586481 -131196991 - MIR SINE MIR -1 261 24 360 273 38 42 chr11 17588635 17588815 -131194657 - MIR SINE MIR -63 145 3 1121 232 0 5 chr11 17589743 17589967 -131193505 + MER58A DNA MER1_type 1 223 -1 694 216 116 30 chr11 17589977 17590046 -131193426 + MER112 DNA MER1_type 1 63 -197 404 302 113 0 chr11 17590046 17590205 -131193267 + MER5B DNA MER1_type 1 177 -1 694 216 116 30 chr11 17590205 17590367 -131193105 + MER112 DNA MER1_type 63 252 -8 43 35 0 0 chr11 17590838 17590895 -131192577 + AT_rich Low_complexity Low_complexity 1 57 0 348 278 31 10 chr11 17591619 17591716 -131191756 - MIR SINE MIR -69 193 95 418 224 37 0 chr11 17591721 17591828 -131191644 + L1MC4 LINE L1 7804 7914 -128 321 178 178 85 chr11 17591890 17592008 -131191464 + L1MC4 LINE L1 7914 8042 0 656 265 38 0 chr11 17592033 17592218 -131191254 + MLT1J1 LTR MaLR 6 197 -249 274 193 9 0 chr11 17592227 17592291 -131191181 + MLT1J2 LTR MaLR 267 313 -137 231 224 0 35 chr11 17592290 17592348 -131191124 + MLT1J1 LTR MaLR 339 394 -52 * 215 219 68 55 chr11 17592436 17592509 -131190963 + L2 LINE L2 2911 2984 -329 180 357 57 51 chr11 17592554 17592711 -131190761 + L2 LINE L2 3110 3267 -5 291 93 0 0 chr11 17592965 17593008 -131190464 + (ATGGTG)n Simple_repeat Simple_repeat 1 43 0 409 171 14 0 chr11 17593039 17593109 -131190363 + L2 LINE L2 3193 3263 -50 249 33 0 0 chr11 17593251 17593281 -131190191 + (TG)n Simple_repeat Simple_repeat 2 31 0 405 248 25 57 chr11 17593498 17593655 -131189817 + MIR SINE MIR 80 231 -31 519 95 0 0 chr11 17594155 17594229 -131189243 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 301 241 0 0 chr11 17594229 17594283 -131189189 - L2 LINE L2 -8 3264 3211 492 297 66 76 chr11 17594417 17594720 -131188752 + L2 LINE L2 2965 3264 -8 12266 144 33 11 chr11 17594915 17596780 -131186692 + L1MA2 LINE L1 2870 4692 -1612 2303 126 0 0 chr11 17596780 17597089 -131186383 + AluSx SINE Alu 1 309 -3 12266 144 33 11 chr11 17597089 17597664 -131185808 + L1MA2 LINE L1 4692 5253 -1051 9718 154 3 10 chr11 17597664 17600117 -131183355 + L1PA13 LINE L1 3715 6163 0 12266 144 33 11 chr11 17600117 17601024 -131182448 + L1MA2 LINE L1 5253 6304 0 249 320 39 19 chr11 17601117 17601220 -131182252 + MIR3 SINE MIR 82 186 -22 3448 238 71 47 chr11 17601319 17601636 -131181836 + L1ME1 LINE L1 35 343 -6053 183 42 0 0 chr11 17601636 17601660 -131181812 + (GA)n Simple_repeat Simple_repeat 2 25 0 3448 238 71 47 chr11 17601660 17602546 -131180926 + L1ME1 LINE L1 343 1266 -5130 4803 239 64 38 chr11 17602557 17602706 -131180766 + L1ME1 LINE L1 1410 1554 -4681 2922 141 6 4 chr11 17602706 17603182 -131180290 + L1MB5 LINE L1 5698 6174 0 4803 239 64 38 chr11 17603182 17603961 -131179511 + L1ME1 LINE L1 1554 2311 -3924 1736 168 10 30 chr11 17603961 17604259 -131179213 - AluJb SINE Alu -7 305 14 4803 239 64 38 chr11 17604259 17605055 -131178417 + L1ME1 LINE L1 2311 3085 -3150 2296 87 37 0 chr11 17605055 17605353 -131178119 + AluY SINE Alu 1 309 -2 4803 239 64 38 chr11 17605353 17606899 -131176573 + L1ME1 LINE L1 3085 4590 -1645 1900 175 10 0 chr11 17606899 17607202 -131176270 + AluJo SINE Alu 1 306 -6 4803 239 64 38 chr11 17607202 17607318 -131176154 + L1ME1 LINE L1 4590 4702 -1533 2291 83 17 0 chr11 17607318 17607607 -131175865 - AluSp SINE Alu -19 294 1 4803 239 64 38 chr11 17607607 17608814 -131174658 + L1ME1 LINE L1 4702 6227 -8 796 179 125 22 chr11 17609136 17609320 -131174152 + MER69 DNA AcHobo 1 203 -1023 321 14 0 0 chr11 17609856 17609928 -131173544 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 301 289 16 25 chr11 17609948 17610069 -131173403 + L1M4 LINE L1 3073 3192 -2954 228 35 0 0 chr11 17611412 17611441 -131172031 + (CA)n Simple_repeat Simple_repeat 2 30 0 236 318 0 9 chr11 17611494 17611601 -131171871 + (CA)n Simple_repeat Simple_repeat 1 106 0 298 284 165 9 chr11 17613782 17613891 -131169581 + MIR3 SINE MIR 37 162 -46 464 300 8 8 chr11 17615644 17615774 -131167698 - MIR SINE MIR -33 229 100 470 304 137 4 chr11 17616054 17616281 -131167191 - MIR SINE MIR -5 257 1 385 264 58 16 chr11 17617690 17617811 -131165661 - L2 LINE L2 -1 3312 3187 247 295 32 42 chr11 17618400 17618495 -131164977 - MIR SINE MIR -25 237 144 * 594 232 8 8 chr11 17618488 17618613 -131164859 - L2 LINE L2 -1 3312 3188 257 276 187 15 chr11 17618650 17618784 -131164688 - MIR SINE MIR -94 168 12 373 243 47 0 chr11 17618845 17618952 -131164520 + MIR3 SINE MIR 49 160 -48 1039 212 60 24 chr11 17619095 17619345 -131164127 + MIR SINE MIR 2 260 -2 220 300 88 41 chr11 17619443 17619613 -131163859 + L2 LINE L2 2928 3105 -167 229 325 0 0 chr11 17620164 17620241 -131163231 + L2 LINE L2 2726 2802 -512 376 314 202 0 chr11 17620256 17620479 -131162993 + L2 LINE L2 2985 3252 -20 275 191 0 17 chr11 17620479 17620600 -131162872 + GA-rich Low_complexity Low_complexity 1 118 0 325 310 41 60 chr11 17621754 17622022 -131161450 + L2 LINE L2 2837 3099 -173 604 229 145 6 chr11 17622121 17622300 -131161172 + MER63A DNA MER1_type 7 210 0 207 100 0 0 chr11 17622377 17622407 -131161065 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 244 290 14 0 chr11 17623858 17623927 -131159545 + L3 LINE CR1 1273 1342 -235 368 354 32 6 chr11 17624529 17624687 -131158785 + MIR SINE MIR 8 169 -93 1786 191 53 20 chr11 17624693 17625091 -131158381 - MER96B DNA MER1_type? 0 417 7 206 279 131 0 chr11 17625094 17625155 -131158317 + MIR SINE MIR 183 251 -11 509 266 107 17 chr11 17625266 17625443 -131158029 - MIR SINE MIR -39 223 31 24 0 0 0 chr11 17625570 17625594 -131157878 + AT_rich Low_complexity Low_complexity 1 24 0 378 327 47 13 chr11 17625775 17625945 -131157527 - MIR SINE MIR -50 212 39 * 674 264 110 18 chr11 17625941 17626168 -131157304 + MIR SINE MIR 7 254 -8 257 342 79 26 chr11 17626666 17626856 -131156616 + L3b LINE CR1 1194 1393 -190 2758 199 30 34 chr11 17627277 17627870 -131155602 + MLT1E LTR MaLR 3 593 0 662 320 10 0 chr11 17628218 17628412 -131155060 - MER117 DNA MER1_type 0 197 2 328 255 43 11 chr11 17628435 17628529 -131154943 - MIR SINE MIR -92 116 20 200 316 13 0 chr11 17628675 17628751 -131154721 + L2 LINE L2 3005 3081 -191 184 345 35 0 chr11 17630239 17630297 -131153175 + L2 LINE L2 3213 3272 0 244 316 173 12 chr11 17630323 17630729 -131152743 + L1ME2 LINE L1 5494 5972 -149 203 220 0 20 chr11 17630951 17631001 -131152471 + (TTA)n Simple_repeat Simple_repeat 3 51 0 641 282 37 33 chr11 17631163 17631404 -131152068 + MIR SINE MIR 18 259 -3 222 310 138 26 chr11 17631966 17632082 -131151390 - MIR SINE MIR -121 141 13 7253 269 79 17 chr11 17632099 17634680 -131148792 - L2 LINE L2 -3 3310 564 207 355 6 22 chr11 17636026 17636209 -131147263 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 275 304 5 38 chr11 17636085 17636269 -131147203 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 215 346 0 22 chr11 17636322 17636458 -131147014 + (CATATA)n Simple_repeat Simple_repeat 3 135 0 6205 230 78 41 chr11 17637678 17638430 -131145042 + L1ME3A LINE L1 3076 3799 -2371 1816 173 0 0 chr11 17638430 17638725 -131144747 + AluSx SINE Alu 1 295 -17 6205 230 78 41 chr11 17638725 17639832 -131143640 + L1ME3A LINE L1 3799 4864 -1306 1588 174 44 7 chr11 17639832 17640126 -131143346 + AluJo SINE Alu 1 305 -7 6205 230 78 41 chr11 17640126 17641185 -131142287 + L1ME3A LINE L1 4864 6143 -27 929 243 70 21 chr11 17641196 17641480 -131141992 + L1ME2 LINE L1 5766 6063 -101 551 273 9 10 chr11 17641475 17641655 -131141817 + L1ME2 LINE L1 5997 6170 0 * 561 318 80 52 chr11 17641849 17642387 -131141085 - HAL1 LINE L1 -1954 553 1 322 299 157 0 chr11 17642387 17642521 -131140951 + MIR SINE MIR 102 256 -6 351 232 232 0 chr11 17642905 17643004 -131140468 - MIR SINE MIR -119 143 22 186 343 14 14 chr11 17643363 17643436 -131140036 - MIR SINE MIR -120 88 16 342 217 144 72 chr11 17643747 17643927 -131139545 + MIR SINE MIR 28 220 -42 257 327 10 29 chr11 17644406 17644510 -131138962 - MIR SINE MIR -33 229 128 265 305 85 17 chr11 17645107 17645225 -131138247 - MIR SINE MIR -22 240 115 493 260 24 0 chr11 17645647 17645770 -131137702 - MIR SINE MIR -132 130 5 206 346 0 25 chr11 17647159 17647240 -131136232 - MIR SINE MIR -35 227 149 198 255 0 20 chr11 17647608 17647659 -131135813 - MIR SINE MIR -64 144 95 720 303 75 10 chr11 17647773 17648067 -131135405 + L2 LINE L2 2995 3307 -6 458 218 55 9 chr11 17648604 17648714 -131134758 - MIR SINE MIR -120 142 28 455 273 52 32 chr11 17649118 17649132 -131134340 - MIR3 SINE MIR -42 166 154 794 268 0 6 chr11 17649132 17649311 -131134161 - MER5B DNA MER1_type 0 178 1 455 273 52 32 chr11 17649311 17649450 -131134022 - MIR3 SINE MIR -54 154 10 404 224 12 0 chr11 17649438 17649523 -131133949 - L2 LINE L2 -1 3271 3186 * 330 280 181 11 chr11 17649646 17649928 -131133544 - L2 LINE L2 -720 2594 2265 757 253 92 28 chr11 17650389 17650829 -131132643 - L2 LINE L2 -106 3207 2748 237 327 26 0 chr11 17651265 17651378 -131132094 + (CA)n Simple_repeat Simple_repeat 1 116 0 213 94 0 0 chr11 17651476 17651508 -131131964 + (CA)n Simple_repeat Simple_repeat 1 32 0 389 337 118 0 chr11 17652529 17652698 -131130774 + MER5A DNA MER1_type 1 189 0 237 33 0 0 chr11 17653155 17653185 -131130287 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 404 273 83 49 chr11 17654624 17654829 -131128643 - L2 LINE L2 -2 3311 3100 410 279 12 67 chr11 17654942 17655049 -131128423 - MIR SINE MIR -3 259 162 2275 64 0 0 chr11 17655049 17655362 -131128110 + AluY SINE Alu 1 313 0 410 279 12 67 chr11 17655362 17655418 -131128054 - MIR SINE MIR -100 162 104 329 387 35 25 chr11 17655409 17655608 -131127864 - L2 LINE L2 -237 3035 2835 * 829 154 8 0 chr11 17655612 17655742 -131127730 + FLAM_C SINE Alu 1 131 -2 319 356 37 0 chr11 17656068 17656203 -131127269 + MIR SINE MIR 21 160 -102 2624 162 40 4 chr11 17656281 17656811 -131126661 + L1MC3 LINE L1 6097 6645 -1140 1919 131 9 25 chr11 17656811 17657131 -131126341 - MER2 DNA MER2_type 0 345 31 3241 142 150 141 chr11 17657180 17657641 -131125831 + L1MC3 LINE L1 6644 7099 -686 285 300 82 9 chr11 17657641 17657751 -131125721 + MLT1F1 LTR MaLR 8 125 -442 3241 142 150 141 chr11 17657751 17658312 -131125160 + L1MC3 LINE L1 7099 7785 0 329 340 58 15 chr11 17658383 17658589 -131124883 + MIR SINE MIR 47 261 -1 266 308 35 123 chr11 17658786 17659104 -131124368 + L2 LINE L2 2957 3246 -26 205 289 41 10 chr11 17659113 17659210 -131124262 + L3 LINE CR1 1326 1425 -152 1508 176 7 55 chr11 17659260 17659567 -131123905 + AluJb SINE Alu 1 292 -20 206 211 0 0 chr11 17660150 17660188 -131123284 + L2 LINE L2 3016 3053 -219 278 360 96 22 chr11 17660260 17660438 -131123034 + L2 LINE L2 3080 3270 -2 213 94 0 0 chr11 17660441 17660473 -131122999 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 801 41 0 0 chr11 17660993 17661090 -131122382 - AluY SINE Alu -5 306 210 282 56 0 0 chr11 17661173 17661209 -131122263 + (TA)n Simple_repeat Simple_repeat 2 37 0 979 142 11 0 chr11 17663326 17663502 -131119970 + CT-rich Low_complexity Low_complexity 1 178 0 329 322 0 0 chr11 17664364 17664454 -131119018 + MIR SINE MIR 37 126 -82 457 288 50 0 chr11 17665342 17665481 -131117991 + MIR SINE MIR 76 221 -41 316 254 51 34 chr11 17665676 17665794 -131117678 - MIR SINE MIR -73 189 70 332 273 50 62 chr11 17667604 17667765 -131115707 - MIR3 SINE MIR -48 160 2 252 0 0 0 chr11 17668020 17668048 -131115424 + (CA)n Simple_repeat Simple_repeat 1 28 0 433 232 99 20 chr11 17668311 17668462 -131115010 + MER112 DNA MER1_type 77 239 -21 319 304 128 82 chr11 17668854 17669111 -131114361 - L2 LINE L2 -1 3271 3003 439 341 80 45 chr11 17669173 17669525 -131113947 + L2 LINE L2 2947 3310 -3 302 214 174 10 chr11 17672103 17672201 -131111271 - L2 LINE L2 -34 3279 3166 1807 192 35 19 chr11 17672770 17673233 -131110239 - Charlie4a DNA MER1_type 0 508 39 1742 168 7 3 chr11 17674239 17674537 -131108935 + AluJo SINE Alu 1 299 -13 315 0 0 0 chr11 17674799 17674834 -131108638 + (A)n Simple_repeat Simple_repeat 1 35 0 193 325 36 12 chr11 17676240 17676323 -131107149 - MIR3 SINE MIR -17 191 107 210 118 0 0 chr11 17676733 17676767 -131106705 + (TGG)n Simple_repeat Simple_repeat 1 34 0 285 29 0 0 chr11 17676811 17676845 -131106627 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 231 314 139 0 chr11 17676845 17676931 -131106541 - L2 LINE L2 -13 3259 3162 186 43 0 0 chr11 17677924 17677947 -131105525 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 2305 62 0 20 chr11 17678200 17678506 -131104966 + AluY SINE Alu 1 300 -11 626 247 27 48 chr11 17681076 17681262 -131102210 + MIR SINE MIR 80 261 -1 351 356 53 0 chr11 17681261 17681393 -131102079 + MIR SINE MIR 32 170 -92 * 1341 258 184 19 chr11 17681852 17682901 -131100571 - L2 LINE L2 0 3313 2063 618 252 0 7 chr11 17682970 17683113 -131100359 + L1MA10 LINE L1 6193 6334 0 2105 138 3 0 chr11 17683121 17683432 -131100040 + AluJo SINE Alu 1 312 0 239 120 0 20 chr11 17683432 17683482 -131099990 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 221 250 0 16 chr11 17683493 17683557 -131099915 + GA-rich Low_complexity Low_complexity 3 65 0 384 141 26 127 chr11 17683703 17683881 -131099591 - MIR SINE MIR -5 257 104 204 300 0 50 chr11 17684044 17684144 -131099328 - L2 LINE L2 -185 3087 2993 832 263 189 7 chr11 17684190 17684623 -131098849 - LTR33 LTR ERVL -9 512 1 352 241 11 0 chr11 17684623 17684710 -131098762 - MIR SINE MIR -12 250 163 471 185 65 0 chr11 17685349 17685457 -131098015 + MIR SINE MIR 107 221 -41 184 337 62 45 chr11 17687144 17687322 -131096150 + L3b LINE CR1 1300 1480 -103 563 233 55 7 chr11 17687323 17687469 -131096003 + MIR SINE MIR 7 159 -103 543 291 223 18 chr11 17687626 17688140 -131095332 - L2 LINE L2 -4 3309 2672 2283 97 3 0 chr11 17688360 17688660 -131094812 - AluSx SINE Alu -11 301 1 411 317 41 7 chr11 17690133 17690278 -131093194 - L2 LINE L2 0 3272 3123 264 342 98 40 chr11 17690372 17690653 -131092819 - L2 LINE L2 0 3313 3050 1968 145 0 7 chr11 17690653 17690963 -131092509 + AluJb SINE Alu 1 308 -4 264 342 98 40 chr11 17690963 17691238 -131092234 - L2 LINE L2 -263 3050 2712 810 257 45 14 chr11 17692464 17692686 -131090786 + MIR SINE MIR 4 232 -30 264 231 0 51 chr11 17692829 17692907 -131090565 - MIR3 SINE MIR -126 82 9 500 243 40 46 chr11 17694233 17694385 -131089087 + MIR SINE MIR 47 197 -65 317 244 70 0 chr11 17694764 17694850 -131088622 + MIR SINE MIR 56 147 -61 836 219 113 21 chr11 17695067 17695305 -131088167 - MIR SINE MIR 0 262 3 301 286 151 24 chr11 17695598 17695724 -131087748 + MIR3 SINE MIR 15 156 -52 345 207 0 101 chr11 17696065 17696263 -131087209 + GA-rich Low_complexity Low_complexity 2 179 0 1820 171 0 0 chr11 17697176 17697469 -131086003 - AluJb SINE Alu -19 293 1 235 88 0 0 chr11 17697553 17697587 -131085885 - MIR SINE MIR -63 145 112 682 251 96 0 chr11 17697768 17697967 -131085505 + MIR SINE MIR 45 262 0 681 254 79 0 chr11 17698143 17698308 -131085164 + MER117 DNA MER1_type 4 181 -16 961 139 42 18 chr11 17698381 17698547 -131084925 + FRAM SINE Alu 1 169 -7 665 318 99 0 chr11 17699189 17699400 -131084072 - MIR SINE MIR -18 244 13 512 237 125 0 chr11 17699401 17699553 -131083919 + MIR SINE MIR 89 259 -3 601 278 98 10 chr11 17700888 17701093 -131082379 - MIR SINE MIR -2 260 38 1817 121 21 14 chr11 17701256 17701538 -131081934 + AluSx SINE Alu 1 284 -28 2123 104 3 7 chr11 17704351 17704650 -131078822 - AluSp SINE Alu -15 298 1 273 98 0 0 chr11 17708303 17708344 -131075128 + (CA)n Simple_repeat Simple_repeat 2 42 0 1958 142 0 0 chr11 17708883 17709178 -131074294 + AluSx SINE Alu 15 309 -3 195 286 71 41 chr11 17709324 17709422 -131074050 - L2 LINE L2 -84 3188 3088 207 100 0 0 chr11 17709541 17709571 -131073901 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 241 268 12 37 chr11 17709756 17709838 -131073634 - MARNA DNA Mariner -351 235 156 413 267 10 0 chr11 17710227 17710345 -131073127 + MIR SINE MIR 32 149 -62 209 125 0 62 chr11 17710902 17710950 -131072522 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 477 240 48 20 chr11 17710955 17711101 -131072371 - MIR SINE MIR -42 220 71 191 352 88 11 chr11 17712561 17712652 -131070820 - L3 LINE CR1 -3 1574 1477 498 288 15 8 chr11 17713178 17713310 -131070162 - MER94 DNA DNA -1 133 1 621 300 57 53 chr11 17715624 17715851 -131067621 + MIR SINE MIR 35 262 0 584 287 161 27 chr11 17716418 17716931 -131066541 - L2 LINE L2 0 3272 2692 408 329 121 33 chr11 17717801 17718041 -131065431 - MIR SINE MIR 0 262 2 706 265 39 0 chr11 17719544 17719725 -131063747 - MIR SINE MIR -73 189 2 503 284 55 11 chr11 17719803 17719986 -131063486 + MIR3 SINE MIR 16 206 -2 248 279 112 45 chr11 17722642 17722821 -131060651 - L2 LINE L2 -155 3117 2927 930 223 5 5 chr11 17722906 17723090 -131060382 - MIR SINE MIR -40 222 39 199 280 215 0 chr11 17723622 17723715 -131059757 + MIR SINE MIR 34 146 -62 403 281 39 13 chr11 17724229 17724382 -131059090 - MER103 DNA DNA -9 157 1 849 268 192 21 chr11 17724406 17724791 -131058681 - L2 LINE L2 -1 3312 2862 712 318 195 20 chr11 17725378 17725646 -131057826 + L3 LINE CR1 780 1000 -577 501 293 38 8 chr11 17725646 17725779 -131057693 - MER91C DNA MER1_type 0 140 4 712 318 195 20 chr11 17725779 17726017 -131057455 + L3 LINE CR1 1000 1375 -202 365 287 100 40 chr11 17726184 17726334 -131057138 - MER5A DNA MER1_type -21 168 10 320 296 6 45 chr11 17727163 17727403 -131056069 + CT-rich Low_complexity Low_complexity 1 230 0 829 250 55 51 chr11 17730926 17731182 -131052290 - MIR SINE MIR -1 261 5 211 250 80 45 chr11 17731984 17732072 -131051400 - MIR SINE MIR -55 153 63 754 273 88 9 chr11 17732601 17732828 -131050644 - MIR SINE MIR -16 246 2 337 332 107 5 chr11 17732900 17733105 -131050367 + L2 LINE L2 2804 3029 -243 238 261 243 0 chr11 17733174 17733285 -131050187 - MLT1K LTR MaLR -11 577 440 2027 153 65 5 chr11 17733301 17733687 -131049785 - MLT2D LTR ERVL 0 414 6 964 271 124 6 chr11 17733693 17734032 -131049440 - MLT1K LTR MaLR -177 411 33 613 321 28 36 chr11 17784567 17784816 -130998656 + MIR SINE MIR 2 248 -14 278 280 85 8 chr11 17785055 17785173 -130998299 + MIR3 SINE MIR 33 159 -49 354 232 69 62 chr11 17785670 17785815 -130997657 + MIR SINE MIR 23 171 -71 663 294 112 17 chr11 17785942 17786401 -130997071 - L2 LINE L2 -251 3062 2555 554 262 14 7 chr11 17786452 17786593 -130996879 - MIR SINE MIR 0 262 121 210 37 0 0 chr11 17787202 17787229 -130996243 + (CA)n Simple_repeat Simple_repeat 2 28 0 291 122 0 0 chr11 17788157 17788206 -130995266 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr11 17788470 17788493 -130994979 + (CA)n Simple_repeat Simple_repeat 1 23 0 359 231 32 64 chr11 17788787 17788943 -130994529 + MIR3 SINE MIR 4 154 -54 236 286 14 0 chr11 17789668 17789738 -130993734 + MIR SINE MIR 30 100 -108 329 248 48 0 chr11 17790271 17790376 -130993096 - MIR3 SINE MIR -18 190 81 309 269 28 21 chr11 17790928 17791069 -130992403 + (CA)n Simple_repeat Simple_repeat 1 142 0 377 147 27 0 chr11 17792127 17792202 -130991270 + GA-rich Low_complexity Low_complexity 2 78 0 27 29 0 0 chr11 17792535 17792569 -130990903 + GC_rich Low_complexity Low_complexity 1 34 0 229 246 53 9 chr11 17792876 17792990 -130990482 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 215 132 26 0 chr11 17792985 17793023 -130990449 + (CCG)n Simple_repeat Simple_repeat 2 40 0 * 22 0 0 0 chr11 17793229 17793251 -130990221 + GC_rich Low_complexity Low_complexity 1 22 0 195 170 0 0 chr11 17793568 17793615 -130989857 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 349 48 16 chr11 17794049 17794175 -130989297 - L2 LINE L2 -1 3271 3142 204 163 0 0 chr11 17794782 17794825 -130988647 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 411 73 0 0 chr11 17794939 17794994 -130988478 + (CA)n Simple_repeat Simple_repeat 2 56 0 364 310 41 60 chr11 17796257 17796525 -130986947 - L2 LINE L2 -173 3099 2837 275 191 0 17 chr11 17797679 17797800 -130985672 + CT-rich Low_complexity Low_complexity 1 118 0 404 314 202 0 chr11 17797800 17798023 -130985449 - L2 LINE L2 -20 3252 2985 250 323 21 10 chr11 17798038 17798134 -130985338 - L2 LINE L2 -512 2802 2706 243 312 77 29 chr11 17798666 17798836 -130984636 - L2 LINE L2 -167 3105 2928 1053 212 60 24 chr11 17798934 17799184 -130984288 - MIR SINE MIR -2 260 2 398 243 47 0 chr11 17799327 17799434 -130984038 - MIR3 SINE MIR -48 160 49 281 276 187 15 chr11 17799495 17799629 -130983843 + MIR SINE MIR 12 168 -94 * 595 297 34 6 chr11 17799616 17799791 -130983681 + L2 LINE L2 3133 3312 -1 260 350 25 33 chr11 17799784 17799904 -130983568 + MIR SINE MIR 144 262 0 * 395 264 58 16 chr11 17800468 17800589 -130982883 + L2 LINE L2 3187 3312 -1 516 313 137 4 chr11 17801998 17802225 -130981247 + MIR SINE MIR 1 257 -5 484 300 8 8 chr11 17802505 17802635 -130980837 + MIR SINE MIR 100 229 -33 314 284 165 9 chr11 17804388 17804497 -130978975 - MIR3 SINE MIR -46 162 37 236 318 0 9 chr11 17806678 17806785 -130976687 + (TG)n Simple_repeat Simple_repeat 1 106 0 228 35 0 0 chr11 17806838 17806867 -130976605 + (TG)n Simple_repeat Simple_repeat 2 30 0 344 290 70 19 chr11 17808169 17808331 -130975141 - L1M4 LINE L1 -1444 3192 880 321 14 0 0 chr11 17808351 17808423 -130975049 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 744 179 125 22 chr11 17808959 17809143 -130974329 - MER69 DNA AcHobo -1023 203 1 3964 241 65 30 chr11 17809465 17810672 -130972800 - L1ME1 LINE L1 -8 6227 5064 2182 83 17 0 chr11 17810672 17810961 -130972511 + AluSp SINE Alu 1 294 -19 3964 241 65 30 chr11 17810961 17811077 -130972395 - L1ME1 LINE L1 -1171 5064 4954 1828 175 10 0 chr11 17811077 17811380 -130972092 - AluJo SINE Alu -6 306 1 3964 241 65 30 chr11 17811380 17812925 -130970547 - L1ME1 LINE L1 -1281 4954 3465 2296 87 37 0 chr11 17812925 17813223 -130970249 - AluY SINE Alu -2 309 1 3964 241 65 30 chr11 17813223 17814019 -130969453 - L1ME1 LINE L1 -2770 3465 2698 1736 168 10 30 chr11 17814019 17814317 -130969155 + AluJb SINE Alu 14 305 -7 3964 241 65 30 chr11 17814317 17815096 -130968376 - L1ME1 LINE L1 -3537 2698 1552 2922 141 6 4 chr11 17815096 17815572 -130967900 - L1MB5 LINE L1 0 6174 5698 3964 241 65 30 chr11 17815572 17815721 -130967751 - L1ME1 LINE L1 -4683 1552 1410 3448 238 71 47 chr11 17815732 17816618 -130966854 - L1ME1 LINE L1 -5130 1266 343 183 42 0 0 chr11 17816618 17816642 -130966830 + (TC)n Simple_repeat Simple_repeat 2 25 0 3448 238 71 47 chr11 17816642 17816959 -130966513 - L1ME1 LINE L1 -6053 343 35 249 320 39 19 chr11 17817058 17817161 -130966311 - MIR3 SINE MIR -22 186 82 12227 145 33 11 chr11 17817254 17818161 -130965311 - L1MA2 LINE L1 0 6304 5419 9718 154 5 7 chr11 17818161 17820614 -130962858 - L1PA13 LINE L1 0 6163 3715 12227 145 33 11 chr11 17820614 17821189 -130962283 - L1MA2 LINE L1 -885 5419 4858 2303 126 0 0 chr11 17821189 17821498 -130961974 - AluSx SINE Alu -3 309 1 12227 145 33 11 chr11 17821498 17823363 -130960109 - L1MA2 LINE L1 -1446 4858 2870 492 297 66 76 chr11 17823558 17823861 -130959611 - L2 LINE L2 -8 3264 2965 301 241 0 0 chr11 17823995 17824049 -130959423 + L2 LINE L2 3211 3264 -8 519 95 0 0 chr11 17824049 17824123 -130959349 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 405 248 25 57 chr11 17824623 17824780 -130958692 - MIR SINE MIR -31 231 80 249 33 0 0 chr11 17824997 17825027 -130958445 + (CA)n Simple_repeat Simple_repeat 2 31 0 409 171 14 0 chr11 17825169 17825239 -130958233 - L2 LINE L2 -50 3263 3193 291 93 0 0 chr11 17825270 17825313 -130958159 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 180 357 57 51 chr11 17825567 17825724 -130957748 - L2 LINE L2 -5 3267 3110 215 219 68 55 chr11 17825769 17825842 -130957630 - L2 LINE L2 -329 2984 2911 231 224 0 35 chr11 17825930 17825988 -130957484 - MLT1J1 LTR MaLR -52 394 339 * 274 193 9 0 chr11 17825987 17826051 -130957421 - MLT1J2 LTR MaLR -137 367 267 656 265 38 0 chr11 17826060 17826245 -130957227 - MLT1J1 LTR MaLR -249 197 6 321 178 178 85 chr11 17826270 17826388 -130957084 - L1MC4 LINE L1 0 8042 7914 418 224 37 0 chr11 17826450 17826557 -130956915 - L1MC4 LINE L1 -128 7914 7804 348 278 31 10 chr11 17826562 17826659 -130956813 + MIR SINE MIR 95 193 -69 43 35 0 0 chr11 17827383 17827440 -130956032 + AT_rich Low_complexity Low_complexity 1 57 0 694 216 116 30 chr11 17827911 17828073 -130955399 - MER112 DNA MER1_type -8 252 63 404 302 113 0 chr11 17828073 17828232 -130955240 - MER5B DNA MER1_type -1 177 1 694 216 116 30 chr11 17828232 17828301 -130955171 - MER112 DNA MER1_type -197 63 1 1121 232 0 5 chr11 17828311 17828535 -130954937 - MER58A DNA MER1_type -1 223 1 360 273 38 42 chr11 17829463 17829643 -130953829 + MIR SINE MIR 3 181 -63 549 285 74 22 chr11 17831797 17832024 -130951448 + MIR SINE MIR 24 261 -1 295 246 136 53 chr11 17832049 17832313 -130951159 - L1ME4a LINE L1 -3 6118 5833 233 304 32 8 chr11 17832464 17832589 -130950883 - L1MC5 LINE L1 -523 7438 7311 355 308 145 36 chr11 17832621 17832842 -130950630 - L1MC4a LINE L1 -450 7358 7114 663 122 0 9 chr11 17833838 17834104 -130949368 + AluSg1 SINE Alu 1 311 -1 196 268 141 0 chr11 17834634 17834705 -130948767 + MIR SINE MIR 109 189 -73 271 245 0 29 chr11 17834708 17834847 -130948625 + (ATG)n Simple_repeat Simple_repeat 1 135 0 * 802 174 5 18 chr11 17834832 17835059 -130948413 + (ATGGTG)n Simple_repeat Simple_repeat 1 223 0 273 197 0 0 chr11 17835066 17835132 -130948340 + (ATG)n Simple_repeat Simple_repeat 3 68 0 749 262 136 5 chr11 17835135 17835356 -130948116 - MIR SINE MIR -5 257 8 270 294 0 24 chr11 17836423 17836508 -130946964 + L2 LINE L2 3226 3308 -5 * 332 284 40 0 chr11 17836503 17836612 -130946860 - MIR SINE MIR -63 145 45 305 331 0 0 chr11 17837842 17837978 -130945494 + (CA)n Simple_repeat Simple_repeat 2 137 0 193 350 17 0 chr11 17838050 17838110 -130945362 - MIR SINE MIR -113 149 89 372 182 300 9 chr11 17839490 17839600 -130943872 - L2 LINE L2 -14 3299 3158 538 188 23 8 chr11 17839619 17839747 -130943725 - MER69 DNA AcHobo -15 2511 2382 287 271 21 90 chr11 17839839 17840027 -130943445 - L2 LINE L2 -191 3122 2948 195 246 138 85 chr11 17840193 17840323 -130943149 - MIR3 SINE MIR -57 151 15 739 209 12 0 chr11 17843084 17843247 -130940225 + L1M4 LINE L1 2864 3028 -3118 312 309 169 25 chr11 17844258 17844302 -130939170 + L1MC4a LINE L1 5600 5636 -2172 2718 173 32 10 chr11 17844302 17844794 -130938678 + MLT1D LTR MaLR 1 503 -2 312 309 169 25 chr11 17844794 17844992 -130938480 + L1MC4a LINE L1 5636 5877 -1931 300 20 61 0 chr11 17845056 17845105 -130938367 + (CA)n Simple_repeat Simple_repeat 2 53 0 704 234 111 16 chr11 17846141 17846385 -130937087 - MLT1J2 LTR MaLR -139 311 45 211 281 150 31 chr11 17847093 17847253 -130936219 + L2 LINE L2 2873 3051 -221 404 279 83 28 chr11 17847364 17847500 -130935972 - MIR SINE MIR -46 162 22 206 237 35 35 chr11 17848542 17848656 -130934816 + (CGGGG)n Simple_repeat Simple_repeat 5 118 0 * 215 132 26 0 chr11 17848651 17848689 -130934783 + (CCG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr11 17848895 17848917 -130934555 + GC_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr11 17849234 17849278 -130934194 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 349 48 16 chr11 17849710 17849836 -130933636 - L2 LINE L2 -1 3271 3142 183 186 0 0 chr11 17850443 17850486 -130932986 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 432 55 0 0 chr11 17850600 17850655 -130932817 + (CA)n Simple_repeat Simple_repeat 2 56 0 777 195 13 20 chr11 17851864 17852013 -130931459 + MIR SINE MIR 13 160 -102 1022 166 40 58 chr11 17852693 17852916 -130930556 - MER20 DNA MER1_type 0 219 1 269 277 72 0 chr11 17852924 17853007 -130930465 + MIR SINE MIR 45 133 -75 974 208 29 0 chr11 17853532 17853773 -130929699 - MER69 DNA AcHobo 0 2526 2279 4008 182 48 40 chr11 17854066 17854679 -130928793 + L1MB7 LINE L1 4656 5263 -921 2083 122 35 40 chr11 17854679 17855056 -130928416 - THE1C LTR MaLR 0 375 1 4008 182 48 40 chr11 17855056 17855598 -130927874 + L1MB7 LINE L1 5263 5834 -350 2393 91 7 0 chr11 17855598 17855896 -130927576 + AluSx SINE Alu 1 300 -12 4008 182 48 40 chr11 17855896 17856231 -130927241 + L1MB7 LINE L1 5834 6165 -19 283 338 117 14 chr11 17856394 17856539 -130926933 - MIR3 SINE MIR -1 207 48 2889 189 14 12 chr11 17856928 17857580 -130925892 - MER69 DNA AcHobo -263 2263 1611 786 236 162 11 chr11 17857581 17857852 -130925620 - MER69 DNA AcHobo -2214 312 1 251 254 17 0 chr11 17858177 17858236 -130925236 + MIR SINE MIR 8 67 -195 2189 106 0 4 chr11 17858298 17858573 -130924899 - AluSg SINE Alu -31 279 6 778 244 28 6 chr11 17859020 17859200 -130924272 + MER91A DNA MER1_type 12 195 -1 347 356 15 30 chr11 17859261 17859463 -130924009 + L2 LINE L2 3077 3275 -38 308 295 142 65 chr11 17859435 17860064 -130923408 + L2 LINE L2 2563 3232 -40 * 267 31 0 0 chr11 17860500 17860532 -130922940 + (TG)n Simple_repeat Simple_repeat 1 32 0 298 244 22 44 chr11 17860549 17860639 -130922833 + L2 LINE L2 2997 3084 -188 425 236 0 87 chr11 17861025 17861152 -130922320 + MER5B DNA MER1_type 4 119 -59 22 35 0 0 chr11 17862599 17862628 -130920844 + GC_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr11 17863186 17863220 -130920252 + GC_rich Low_complexity Low_complexity 1 34 0 257 318 135 27 chr11 17864971 17865119 -130918353 + MIR SINE MIR 21 184 -78 1533 245 211 24 chr11 17865839 17866717 -130916755 - L2 LINE L2 -14 3299 2252 1006 350 99 8 chr11 17866729 17867459 -130916013 + L2 LINE L2 2513 3313 0 318 200 0 57 chr11 17867802 17867872 -130915600 + L2 LINE L2 3248 3313 0 807 253 65 80 chr11 17869649 17869985 -130913487 - L2 LINE L2 -36 3277 2947 255 256 26 13 chr11 17869991 17870069 -130913403 - L2 LINE L2 -21 3251 3173 2157 107 0 29 chr11 17870145 17870453 -130913019 - AluSx SINE Alu -13 299 1 268 296 25 37 chr11 17871250 17871331 -130912141 + L3b LINE CR1 1295 1374 -209 419 336 68 68 chr11 17873816 17874155 -130909317 - L2 LINE L2 -14 3258 2920 369 319 30 0 chr11 17874344 17874479 -130908993 + MIR3 SINE MIR 16 154 -54 472 306 97 9 chr11 17874914 17875130 -130908342 + MIR SINE MIR 28 262 0 292 221 17 30 chr11 17875569 17875687 -130907785 - MIR SINE MIR -79 129 34 591 271 52 18 chr11 17876146 17876375 -130907097 - L1MC5 LINE L1 -48 7913 7677 1229 209 77 75 chr11 17876377 17876749 -130906723 - L1MC5 LINE L1 -191 7770 7394 2263 51 0 11 chr11 17876749 17877050 -130906422 - AluY SINE Alu 0 311 14 1229 209 77 75 chr11 17877050 17877206 -130906266 - L1MC5 LINE L1 -567 7394 7240 1214 346 74 31 chr11 17877226 17878241 -130905231 + L2 LINE L2 1785 2842 -472 193 275 153 42 chr11 17878307 17878496 -130904976 + L2 LINE L2 2932 3141 -131 * 200 186 264 70 chr11 17878462 17878591 -130904881 + MIR SINE MIR 109 262 0 1256 243 53 49 chr11 17878714 17878792 -130904680 + MLT1J LTR MaLR 6 82 -429 1853 191 34 16 chr11 17878792 17879175 -130904297 - MLT1B LTR MaLR 0 390 1 1256 243 53 49 chr11 17879175 17879381 -130904091 + MLT1J LTR MaLR 82 295 -216 2316 182 108 17 chr11 17879381 17879842 -130903630 + MLT1D LTR MaLR 3 505 0 1256 243 53 49 chr11 17879842 17879988 -130903484 + MLT1J LTR MaLR 295 439 -72 487 273 21 105 chr11 17880362 17880509 -130902963 + MIR SINE MIR 28 150 -112 1784 155 14 14 chr11 17880509 17880826 -130902646 + AluJb SINE Alu 1 317 0 487 273 21 105 chr11 17880826 17880915 -130902557 + MIR SINE MIR 150 245 -17 1497 146 9 131 chr11 17880926 17881247 -130902225 + AluJo SINE Alu 1 282 -30 369 0 0 0 chr11 17881265 17881306 -130902166 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2531 143 16 21 chr11 17881575 17882010 -130901462 + L1MC1 LINE L1 5896 6328 -5 1066 255 164 55 chr11 17882022 17882516 -130900956 - MLT1H LTR MaLR -1 548 1 294 295 62 0 chr11 17882516 17882628 -130900844 + MIR SINE MIR 141 259 -3 513 222 185 0 chr11 17883062 17883197 -130900275 - MIR SINE MIR -74 188 29 328 157 43 14 chr11 17884543 17884613 -130898859 - L2 LINE L2 -3 3310 3239 188 222 192 71 chr11 17885091 17885190 -130898282 - MIR SINE MIR -27 235 125 612 220 99 7 chr11 17885353 17885494 -130897978 - MIR SINE MIR -105 157 4 221 287 33 57 chr11 17885562 17885684 -130897788 - L2 LINE L2 -81 3191 3073 627 317 24 5 chr11 17885696 17885901 -130897571 + MIR SINE MIR 50 258 -4 293 210 290 0 chr11 17886510 17886610 -130896862 - L2 LINE L2 -220 3052 2924 214 330 6 22 chr11 17887481 17887660 -130895812 + C-rich Low_complexity Low_complexity 2 177 0 261 286 0 29 chr11 17888116 17888186 -130895286 + MIR3 SINE MIR 109 176 -32 636 275 90 5 chr11 17888904 17889126 -130894346 + MIR SINE MIR 20 260 -2 255 326 69 21 chr11 17889406 17889550 -130893922 - L3 LINE CR1 -1283 294 144 1442 204 204 15 chr11 17890066 17890522 -130892950 - MLT1F LTR MaLR 0 542 1 313 250 25 25 chr11 17890535 17890615 -130892857 + L2 LINE L2 3193 3272 0 194 323 15 15 chr11 17891182 17891247 -130892225 - L2 LINE L2 -7 3265 3201 1571 226 91 10 chr11 17891461 17891924 -130891548 + MLT1E2 LTR MaLR 137 614 -10 3492 161 35 18 chr11 17891924 17892603 -130890869 - L1MB7 LINE L1 -97 6087 5397 335 172 0 0 chr11 17892609 17892667 -130890805 + MLT1E2 LTR MaLR 594 651 -3 2567 256 44 51 chr11 17893213 17894306 -130889166 - L2 LINE L2 -37 3276 2195 382 274 9 9 chr11 17895871 17895977 -130887495 - MIR SINE MIR -65 143 38 595 295 46 25 chr11 17896271 17896508 -130886964 + MIR SINE MIR 8 249 -13 392 289 19 0 chr11 17897276 17897380 -130886092 - MIR3 SINE MIR -38 170 65 449 289 40 33 chr11 17898255 17898407 -130885065 - MIR SINE MIR -84 178 26 514 281 82 29 chr11 17898770 17899076 -130884396 + LTR16C LTR ERVL 168 489 -2 840 287 85 5 chr11 17900228 17900564 -130882908 + MIR SINE MIR 12 262 0 1991 143 0 7 chr11 17901024 17901317 -130882155 - AluSc SINE Alu -3 306 16 2225 120 3 16 chr11 17901962 17902278 -130881194 - AluSx SINE Alu 0 312 1 1842 139 58 4 chr11 17903876 17904192 -130879280 + AluSx SINE Alu 1 331 0 757 183 40 96 chr11 17904774 17905025 -130878447 - L1ME3A LINE L1 0 6170 5934 * 901 214 21 84 chr11 17905022 17905143 -130878329 - L1MD2 LINE L1 0 6359 6232 2306 106 0 16 chr11 17905143 17905454 -130878018 - AluSx SINE Alu -6 306 1 901 214 21 84 chr11 17905454 17905664 -130877808 - L1MD2 LINE L1 -127 6232 6049 * 917 232 48 53 chr11 17905647 17906082 -130877390 - L1ME3A LINE L1 -196 5966 5239 2425 100 129 5 chr11 17906082 17906463 -130877009 + MSTA LTR MaLR 1 428 0 917 232 48 53 chr11 17906463 17906551 -130876921 - L1ME3A LINE L1 -923 5239 5152 * 6069 165 31 21 chr11 17906518 17908022 -130875450 - L1MC1 LINE L1 -5 6328 4810 312 263 25 59 chr11 17908164 17908282 -130875190 + MIR SINE MIR 77 190 -72 190 332 30 84 chr11 17908587 17908789 -130874683 + MIR3 SINE MIR 16 206 -2 303 291 0 68 chr11 17908929 17909032 -130874440 + L1ME LINE L1 5644 5739 -382 442 287 48 108 chr11 17909160 17909428 -130874044 - L2 LINE L2 0 3272 3021 831 305 153 39 chr11 17909525 17910535 -130872937 - L2 LINE L2 -444 2870 1746 287 259 115 22 chr11 17911643 17911782 -130871690 - MIR3 SINE MIR -8 200 49 491 317 63 31 chr11 17912136 17912512 -130870960 - MLT1L LTR MaLR -10 605 186 480 226 30 17 chr11 17912577 17912727 -130870745 + MER58 DNA MER1_type 63 2420 0 289 279 38 89 chr11 17912727 17912883 -130870589 - MLT1L LTR MaLR -460 155 8 205 301 60 12 chr11 17912948 17913031 -130870441 - L3 LINE CR1 -3 1574 1488 779 263 31 0 chr11 17913174 17913429 -130870043 + L1M4 LINE L1 4198 4460 -1686 208 151 94 19 chr11 18113683 18113736 -130669736 + MIR SINE MIR 44 100 -108 1093 152 0 6 chr11 18114327 18114505 -130668967 - AluSg/x SINE Alu -12 300 124 347 345 95 12 chr11 18114526 18114694 -130668778 - L2 LINE L2 -3 3269 3088 378 320 23 8 chr11 18114831 18114959 -130668513 + MIR3 SINE MIR 3 132 -76 552 306 56 23 chr11 18115680 18115896 -130667576 - MIR SINE MIR -12 250 28 833 319 77 38 chr11 18116185 18116665 -130666807 - MLT1K LTR MaLR -86 502 4 349 91 0 18 chr11 18116665 18116720 -130666752 + L1MA2 LINE L1 6097 6150 -154 318 118 0 0 chr11 18116729 18116780 -130666692 + L1MA2 LINE L1 6098 6148 -156 1467 77 27 45 chr11 18116786 18116842 -130666630 + L1MA2 LINE L1 6088 6143 -161 2199 120 0 7 chr11 18116842 18117141 -130666331 + AluSx SINE Alu 1 297 -15 1467 77 27 45 chr11 18117141 18117305 -130666167 + L1MA2 LINE L1 6143 6304 0 224 245 0 0 chr11 18117465 18117514 -130665958 + L2 LINE L2 3264 3312 -1 8195 22 0 0 chr11 18118273 18119251 -130664221 - L1PA3 LINE L1 0 6155 5177 12332 28 1 25 chr11 18119251 18120755 -130662717 + L1PA3 LINE L1 3714 5180 -966 848 251 150 5 chr11 18120786 18120993 -130662479 - MIR SINE MIR -21 241 5 376 216 65 126 chr11 18121220 18121419 -130662053 + MLT1J2 LTR MaLR 264 450 0 702 236 31 75 chr11 18121781 18122141 -130661331 + L1M4 LINE L1 3656 3999 -2147 517 180 0 34 chr11 18122154 18122243 -130661229 - AluJ/FRAM SINE Alu -13 299 214 213 294 336 20 chr11 18122590 18122736 -130660736 + MIR SINE MIR 31 222 -40 207 273 55 0 chr11 18123627 18123682 -130659790 - L2 LINE L2 -47 3225 3168 301 309 43 11 chr11 18123777 18123871 -130659601 + L2 LINE L2 3138 3234 -38 * 510 275 98 26 chr11 18123865 18124058 -130659414 + MIR SINE MIR 51 257 -5 363 318 181 27 chr11 18124171 18124630 -130658842 - L2 LINE L2 -181 3091 2550 204 298 0 0 chr11 18125346 18125393 -130658079 + polypurine Low_complexity Low_complexity 3 49 0 521 287 74 32 chr11 18125733 18125949 -130657523 + MIR SINE MIR 28 252 -10 262 224 0 0 chr11 18125931 18125980 -130657492 - L2 LINE L2 -4 3309 3261 * 263 316 0 13 chr11 18126735 18126811 -130656661 + L2 LINE L2 3234 3308 -5 544 325 11 26 chr11 18127406 18127597 -130655875 + MIR3 SINE MIR 4 191 -17 412 257 181 21 chr11 18127614 18127758 -130655714 + MER5A DNA MER1_type 23 189 0 394 237 193 0 chr11 18128420 18128534 -130654938 + L2 LINE L2 3137 3272 0 300 220 17 0 chr11 18129516 18129575 -130653897 - L2 LINE L2 0 3272 3213 374 298 218 16 chr11 18129672 18129924 -130653548 + L2 LINE L2 3010 3312 -1 669 269 114 9 chr11 18129964 18130183 -130653289 + MIR SINE MIR 11 252 -10 558 303 29 6 chr11 18130593 18130768 -130652704 + MIR3 SINE MIR 3 181 -27 186 315 83 65 chr11 18131403 18131511 -130651961 - L2 LINE L2 -16 3256 3147 1314 141 11 0 chr11 18131661 18131846 -130651626 + MER5A DNA MER1_type 3 189 0 582 66 13 0 chr11 18132029 18132105 -130651367 + L1PA5 LINE L1 6078 6154 0 551 210 46 22 chr11 18133359 18133519 -130649953 + MIR SINE MIR 20 180 -66 23 68 0 0 chr11 18133993 18134037 -130649435 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr11 18135084 18135109 -130648363 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 984 192 77 34 chr11 18135149 18135383 -130648089 + AluJo SINE Alu 29 272 -40 194 0 0 37 chr11 18135383 18135410 -130648062 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 446 271 99 7 chr11 18135424 18135575 -130647897 - MIR3 SINE MIR 0 208 44 558 253 27 54 chr11 18135618 18135804 -130647668 - L2 LINE L2 0 3313 3133 360 312 0 0 chr11 18136192 18136285 -130647187 + MIR3 SINE MIR 82 174 -34 936 273 71 21 chr11 18136795 18137174 -130646298 + L1ME4a LINE L1 5582 5987 -134 1864 161 6 22 chr11 18137174 18137491 -130645981 + AluSx SINE Alu 1 312 0 936 273 71 21 chr11 18137491 18137547 -130645925 + L1ME4a LINE L1 5987 6039 -82 25 0 0 0 chr11 18137593 18137618 -130645854 + AT_rich Low_complexity Low_complexity 1 25 0 296 167 136 0 chr11 18137654 18137720 -130645752 + L3 LINE CR1 1364 1438 -139 407 239 11 11 chr11 18138328 18138416 -130645056 - MIR SINE MIR -94 114 27 918 152 0 0 chr11 18140525 18140663 -130642809 - FRAM SINE Alu -39 137 1 252 276 40 81 chr11 18140924 18141098 -130642374 - L1MC4 LINE L1 -19 8023 7857 1172 73 6 18 chr11 18141128 18141292 -130642180 - L1MB3 LINE L1 -2 6181 6020 3921 136 16 11 chr11 18141296 18141942 -130641530 - L1MB3 LINE L1 -254 5917 5269 * 5888 233 54 24 chr11 18141930 18143711 -130639761 - L1MB3 LINE L1 -1391 4755 2922 1302 258 74 13 chr11 18143707 18143840 -130639632 - L1MC4 LINE L1 0 8042 7918 * 2290 109 0 0 chr11 18143840 18144151 -130639321 - AluY SINE Alu 0 311 1 1302 258 74 13 chr11 18144151 18144479 -130638993 - L1MC4 LINE L1 -124 7918 7553 695 176 24 0 chr11 18144480 18144605 -130638867 - L1ME LINE L1 -5937 133 6 1132 190 45 0 chr11 18145309 18145509 -130637963 - MER3 DNA MER1_type 0 209 1 794 103 9 0 chr11 18145614 18145721 -130637751 + AluSp SINE Alu 26 133 -180 1267 113 0 11 chr11 18145744 18145930 -130637542 + AluSq SINE Alu 127 310 -3 408 272 0 10 chr11 18146026 18146129 -130637343 - MIR SINE MIR -60 148 47 527 355 50 0 chr11 18146136 18146336 -130637136 + MIR SINE MIR 23 232 -30 251 357 45 9 chr11 18147053 18147165 -130636307 - L2 LINE L2 -1 3271 3156 546 303 63 6 chr11 18147643 18147818 -130635654 + MIR SINE MIR 64 248 -14 1274 173 148 0 chr11 18147872 18148109 -130635363 - AluSg SINE Alu -6 304 33 247 262 2 17 chr11 18148247 18148330 -130635142 - MIR SINE MIR -66 142 73 225 323 152 26 chr11 18149832 18150076 -130633396 - L2 LINE L2 -261 3011 2739 515 231 77 8 chr11 18150086 18150203 -130633269 - L2 LINE L2 0 3272 3148 230 283 38 75 chr11 18150262 18150368 -130633104 + L2 LINE L2 3168 3269 -3 289 374 26 53 chr11 18150384 18150574 -130632898 - L2 LINE L2 -571 2743 2559 224 368 32 0 chr11 18151267 18151362 -130632110 - MIR SINE MIR -65 143 46 348 250 105 17 chr11 18151626 18151766 -130631706 + MIR3 SINE MIR 11 163 -62 244 256 144 0 chr11 18152136 18152226 -130631246 + L2 LINE L2 3211 3313 0 412 333 80 33 chr11 18152365 18152788 -130630684 + L2 LINE L2 1528 1970 -1344 584 302 45 6 chr11 18153570 18153749 -130629723 - L2 LINE L2 0 3313 3128 283 238 21 119 chr11 18154766 18154909 -130628563 + MIR SINE MIR 79 207 -55 231 327 112 74 chr11 18155042 18155354 -130628118 + L2 LINE L2 2942 3265 -7 408 309 75 32 chr11 18156286 18156474 -130626998 + MIR SINE MIR 52 247 -15 311 319 156 22 chr11 18157509 18157785 -130625687 + L1ME LINE L1 5522 5834 -287 2351 93 0 28 chr11 18158774 18159095 -130624377 - AluSx SINE Alu 0 312 1 304 269 120 19 chr11 18159244 18159352 -130624120 + L2 LINE L2 3189 3307 -6 505 216 52 9 chr11 18159716 18159832 -130623640 - MIR SINE MIR -122 140 20 284 350 81 0 chr11 18160853 18160976 -130622496 + L2 LINE L2 2929 3061 -211 303 250 62 12 chr11 18161031 18161111 -130622361 - MIR3 SINE MIR -46 162 79 193 189 113 0 chr11 18161594 18161647 -130621825 - MIR SINE MIR -46 216 158 406 300 79 49 chr11 18161822 18162063 -130621409 - MIR SINE MIR -6 256 2 2406 94 0 0 chr11 18162826 18163133 -130620339 + AluSx SINE Alu 1 307 -5 279 0 0 0 chr11 18163291 18163322 -130620150 + (A)n Simple_repeat Simple_repeat 1 31 0 2029 142 7 0 chr11 18163322 18163610 -130619862 - AluSx SINE Alu -21 291 2 378 198 188 0 chr11 18163731 18163827 -130619645 - MIR SINE MIR -78 184 71 217 336 61 30 chr11 18164462 18164593 -130618879 + L3 LINE CR1 1441 1575 -2 2348 83 61 22 chr11 18164979 18165340 -130618132 + THE1C LTR MaLR 1 375 0 435 268 81 0 chr11 18165549 18165672 -130617800 + L2 LINE L2 3180 3312 -1 283 311 113 0 chr11 18165744 18165850 -130617622 + MIR SINE MIR 67 184 -78 385 289 70 7 chr11 18166282 18166424 -130617048 + MIR3 SINE MIR 56 206 -2 545 214 121 12 chr11 18166779 18166952 -130616520 - MIR SINE MIR -13 249 58 519 265 50 15 chr11 18166994 18167194 -130616278 - MIR SINE MIR -48 214 8 251 299 63 116 chr11 18167834 18168118 -130615354 + L2 LINE L2 2995 3263 -9 651 247 25 43 chr11 18168268 18168357 -130615115 - L2 LINE L2 -8 3305 3216 1476 177 3 63 chr11 18168357 18168657 -130614815 + AluJo SINE Alu 26 307 -5 651 247 25 43 chr11 18168657 18168802 -130614670 - L2 LINE L2 -97 3216 3075 466 274 44 0 chr11 18169492 18169627 -130613845 - MIR3 SINE MIR -52 156 16 455 300 29 29 chr11 18169810 18169980 -130613492 - MIR3 SINE MIR -11 197 28 15146 105 57 19 chr11 18170014 18170839 -130612633 + Tigger1 DNA MER2_type 24 816 -1602 2244 119 0 3 chr11 18170839 18171149 -130612323 + AluSg SINE Alu 1 309 -1 15146 105 57 19 chr11 18171149 18172631 -130610841 + Tigger1 DNA MER2_type 816 2418 0 357 210 76 51 chr11 18174546 18174698 -130608774 + MIR SINE MIR 38 199 -9 295 290 94 29 chr11 18175140 18175278 -130608194 + MIR SINE MIR 109 255 -7 352 264 101 15 chr11 18175935 18176065 -130607407 - MIR SINE MIR -61 147 43 2064 106 3 48 chr11 18176213 18176524 -130606948 - AluSg SINE Alu -13 297 1 240 343 59 0 chr11 18176573 18176675 -130606797 + L3 LINE CR1 163 270 -1307 392 282 213 29 chr11 18177061 18177338 -130606134 - L2 LINE L2 -60 3253 2926 1908 193 28 6 chr11 18177534 18177891 -130605581 + MLT1A1 LTR MaLR 1 365 0 353 337 60 20 chr11 18177974 18178173 -130605299 + MIR SINE MIR 50 256 -6 408 277 14 21 chr11 18178611 18178752 -130604720 + MIR3 SINE MIR 67 206 -2 194 254 151 8 chr11 18179408 18179534 -130603938 + L2 LINE L2 3111 3254 -18 269 333 17 17 chr11 18179664 18179781 -130603691 + MIR3 SINE MIR 83 199 -9 338 294 25 25 chr11 18180131 18180250 -130603222 - MIR3 SINE MIR -54 154 36 664 251 192 18 chr11 18180445 18180784 -130602688 - L1ME4a LINE L1 -74 6047 5650 224 248 89 10 chr11 18180804 18180905 -130602567 - MIR3 SINE MIR -13 195 87 2000 141 0 13 chr11 18181725 18182029 -130601443 - AluJo SINE Alu -12 300 1 595 229 95 34 chr11 18182139 18182318 -130601154 + MIR3 SINE MIR 17 206 -2 247 232 0 18 chr11 18182871 18182927 -130600545 + MIR SINE MIR 98 152 -56 275 261 139 0 chr11 18183406 18183521 -130599951 - MIR SINE MIR -30 232 102 232 320 0 0 chr11 18183554 18183604 -130599868 - L2 LINE L2 -81 3191 3142 577 295 89 58 chr11 18183778 18184099 -130599373 - L2 LINE L2 -282 2990 2656 2596 139 24 2 chr11 18184099 18184516 -130598956 - MSTA LTR MaLR -2 426 1 577 295 89 58 chr11 18184516 18184627 -130598845 - L2 LINE L2 -616 2656 2550 315 330 34 17 chr11 18184606 18184724 -130598748 - MIR SINE MIR -137 125 6 * 541 251 89 22 chr11 18184726 18184905 -130598567 - L2 LINE L2 0 3313 3123 313 246 43 65 chr11 18185198 18185336 -130598136 - MIR SINE MIR -55 207 73 804 180 8 0 chr11 18185776 18185904 -130597568 - MER20 DNA MER1_type 0 219 91 204 333 0 0 chr11 18186811 18186865 -130596607 + L2 LINE L2 3133 3186 -86 236 291 43 77 chr11 18187227 18187344 -130596128 - L2 LINE L2 -49 3223 3111 199 162 0 0 chr11 18188944 18188981 -130594491 - L2 LINE L2 -5 3308 3272 535 211 43 56 chr11 18189235 18189396 -130594076 + MIR3 SINE MIR 1 159 -49 240 188 175 0 chr11 18189412 18189485 -130593987 - MER102b DNA MER1_type -38 303 220 1223 152 57 46 chr11 18189614 18189877 -130593595 + MER33 DNA MER1_type 1 266 -58 246 370 20 0 chr11 18189908 18190008 -130593464 - MIR SINE MIR -73 135 34 429 273 33 66 chr11 18190116 18190299 -130593173 + MIR3 SINE MIR 29 205 -3 1933 108 3 76 chr11 18190698 18191014 -130592458 - AluSx SINE Alu -18 294 2 252 156 0 0 chr11 18191070 18191115 -130592357 + L1MB8 LINE L1 6085 6129 -49 30 83 0 0 chr11 18191136 18191208 -130592264 + AT_rich Low_complexity Low_complexity 1 72 0 217 382 32 0 chr11 18191392 18191515 -130591957 + MIR3 SINE MIR 66 192 -16 357 203 47 23 chr11 18192185 18192313 -130591159 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 242 257 338 0 chr11 18192629 18192765 -130590707 - MIR SINE MIR -56 206 25 936 246 76 38 chr11 18193089 18193377 -130590095 + L1MC4 LINE L1 6451 6749 -1293 2302 54 0 7 chr11 18194148 18194428 -130589044 + AluY SINE Alu 31 308 -3 224 57 0 29 chr11 18195011 18195046 -130588426 + (GA)n Simple_repeat Simple_repeat 1 34 0 447 335 12 12 chr11 18196174 18196344 -130587128 - MIR3 SINE MIR -22 186 17 4728 145 45 50 chr11 18196702 18196875 -130586597 + L1MB3 LINE L1 5154 5326 -857 1581 173 35 0 chr11 18196875 18197135 -130586337 + AluJb SINE Alu 24 292 -20 4728 145 45 50 chr11 18197135 18197985 -130585487 + L1MB3 LINE L1 5326 6183 0 1573 206 0 17 chr11 18198058 18198350 -130585122 + AluJo SINE Alu 1 287 -25 356 243 9 0 chr11 18198353 18198464 -130585008 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 1339 224 20 66 chr11 18198467 18198874 -130584598 + MLT1B LTR MaLR 2 389 -1 2607 147 31 2 chr11 18198874 18199322 -130584150 + L1MD1 LINE L1 5777 6237 -5 425 286 97 19 chr11 18199673 18199879 -130583593 + MIR SINE MIR 20 241 -21 2046 145 0 19 chr11 18200061 18200378 -130583094 + AluJo SINE Alu 1 311 -1 182 216 0 0 chr11 18200676 18200713 -130582759 - L3 LINE CR1 -15 1562 1526 845 203 61 0 chr11 18200713 18200876 -130582596 - MER58B DNA MER1_type 0 341 169 389 223 143 30 chr11 18200898 18201122 -130582350 - L3 LINE CR1 -44 1533 1221 1849 157 213 34 chr11 18201122 18201600 -130581872 + MLT1F1 LTR MaLR 1 564 -3 207 254 105 26 chr11 18201605 18201719 -130581753 - L3 LINE CR1 -354 1223 1101 191 270 87 78 chr11 18201749 18201864 -130581608 + L2 LINE L2 3106 3221 -51 396 293 26 0 chr11 18201869 18201985 -130581487 - L3 LINE CR1 -489 1088 970 211 308 104 92 chr11 18202317 18202730 -130580742 + L2 LINE L2 2855 3272 0 723 239 17 0 chr11 18203276 18203448 -130580024 + MER33 DNA MER1_type 1 165 -99 1265 103 6 0 chr11 18203448 18203622 -130579850 + AluSg/x SINE Alu 132 306 -6 1156 174 88 3 chr11 18203635 18203866 -130579606 + L1MB7 LINE L1 5925 6173 -11 528 120 90 0 chr11 18203866 18203966 -130579506 + MER33 DNA MER1_type 216 324 0 204 354 122 7 chr11 18205880 18206027 -130577445 - L3b LINE CR1 -6 1577 1414 2021 127 0 53 chr11 18206048 18206371 -130577101 - AluSx SINE Alu -6 306 1 612 228 172 14 chr11 18206907 18206962 -130576510 - MIR SINE MIR -9 253 208 826 186 110 68 chr11 18206962 18207226 -130576246 - ORSL DNA AcHobo 0 275 1 612 228 172 14 chr11 18207226 18207385 -130576087 - MIR SINE MIR -54 208 5 359 200 76 90 chr11 18207543 18207688 -130575784 + MIR3 SINE MIR 64 206 -2 21 0 0 0 chr11 18208104 18208125 -130575347 + AT_rich Low_complexity Low_complexity 1 21 0 206 325 39 13 chr11 18209486 18209563 -130573909 + MIR3 SINE MIR 130 208 0 846 195 85 9 chr11 18209642 18209916 -130573556 - MER46C DNA MER2_type -2 336 1 261 57 0 0 chr11 18210073 18210108 -130573364 + (CATA)n Simple_repeat Simple_repeat 2 36 0 456 168 93 0 chr11 18210254 18210361 -130573111 - MIR SINE MIR -62 200 84 556 233 140 26 chr11 18210488 18210716 -130572756 + L2 LINE L2 3057 3310 -3 423 98 0 0 chr11 18211013 18211074 -130572398 + (CA)n Simple_repeat Simple_repeat 1 61 0 2007 148 28 60 chr11 18211098 18211498 -130571974 + MLT1B LTR MaLR 4 390 0 373 280 106 32 chr11 18211992 18212181 -130571291 - L2 LINE L2 -1 3312 3110 23 0 0 0 chr11 18212868 18212891 -130570581 + GC_rich Low_complexity Low_complexity 1 23 0 498 122 0 0 chr11 18215133 18215231 -130568241 + (GA)n Simple_repeat Simple_repeat 1 98 0 1107 136 0 6 chr11 18215753 18215922 -130567550 - AluJb SINE Alu -8 304 137 216 214 71 0 chr11 18215926 18215982 -130567490 - MIR SINE MIR -115 147 88 250 279 60 28 chr11 18215982 18216146 -130567326 + L1ME LINE L1 1 169 -5901 2768 137 99 29 chr11 18216710 18217275 -130566197 + MER4B LTR ERV1 1 779 0 565 113 0 2 chr11 18217855 18218102 -130565370 + AluSx SINE Alu 1 296 -16 2453 68 0 0 chr11 18218294 18218602 -130564870 + AluY SINE Alu 1 308 -3 24 0 0 0 chr11 18220316 18220340 -130563132 + AT_rich Low_complexity Low_complexity 1 24 0 325 319 22 14 chr11 18222087 18222225 -130561247 - MIR3 SINE MIR -2 206 68 483 244 49 0 chr11 18222709 18222834 -130560638 - MIR SINE MIR -45 163 28 264 385 35 7 chr11 18223839 18223982 -130559490 - L2 LINE L2 -4 3268 3122 238 330 0 52 chr11 18225049 18225146 -130558326 + MIR3 SINE MIR 85 176 -32 848 284 141 32 chr11 18227041 18227803 -130555669 + L2 LINE L2 2458 3309 -4 202 258 81 16 chr11 18227814 18227876 -130555596 - MIR SINE MIR -169 93 28 307 337 51 28 chr11 18227961 18228139 -130555333 - L1ME4a LINE L1 -4 6117 5936 1122 151 0 11 chr11 18228210 18228395 -130555077 + AluSg/x SINE Alu 130 312 0 427 244 93 111 chr11 18228666 18229470 -130554002 - L1ME3A LINE L1 -209 5953 5174 830 287 52 52 chr11 18229480 18229975 -130553497 - L1ME LINE L1 -299 5822 5328 1072 229 55 28 chr11 18229983 18230236 -130553236 + MIR SINE MIR 3 262 0 311 267 21 38 chr11 18231016 18231166 -130552306 - MIR SINE MIR -35 227 23 578 227 227 6 chr11 18231186 18231362 -130552110 - MER58C DNA MER1_type 0 215 1 525 250 89 76 chr11 18232514 18232750 -130550722 + MLT1J LTR MaLR 94 332 -179 490 201 106 7 chr11 18232778 18232918 -130550554 - MIR SINE MIR -65 143 33 756 231 173 9 chr11 18232947 18233172 -130550300 - MIR SINE MIR 0 262 1 212 372 74 0 chr11 18234088 18234209 -130549263 - L2 LINE L2 -25 3247 3118 241 254 16 0 chr11 18234225 18234288 -130549184 + L1MC/D LINE L1 5668 5731 -2077 2083 145 78 13 chr11 18234710 18235082 -130548390 + MSTD LTR MaLR 1 396 0 181 250 56 14 chr11 18235329 18235401 -130548071 - L2 LINE L2 -641 2673 2599 1347 259 183 7 chr11 18235443 18236106 -130547366 + L2 LINE L2 2529 3312 -1 217 246 15 15 chr11 18236609 18236674 -130546798 - MIR SINE MIR -56 152 88 263 313 137 28 chr11 18237133 18237344 -130546128 - MIR SINE MIR -6 256 23 226 395 105 3 chr11 18237533 18237829 -130545643 - L3 LINE CR1 -460 1117 792 867 185 22 29 chr11 18238538 18238850 -130544622 - L1MC1 LINE L1 -1 6332 5989 1265 288 121 28 chr11 18238876 18239292 -130544180 - L2 LINE L2 -16 3297 2921 2550 45 0 0 chr11 18239292 18239601 -130543871 + AluY SINE Alu 1 309 -2 1265 288 121 28 chr11 18239601 18240061 -130543411 - L2 LINE L2 -392 2921 2316 1525 217 98 41 chr11 18240862 18241403 -130542069 + L2 LINE L2 2737 3312 -1 273 313 263 6 chr11 18241837 18242016 -130541456 + MIR SINE MIR 32 256 -6 180 77 0 0 chr11 18242857 18242883 -130540589 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 281 292 42 71 chr11 18242948 18243116 -130540356 + MIR SINE MIR 100 262 0 613 276 29 12 chr11 18243554 18243724 -130539748 + MIR3 SINE MIR 30 202 -6 194 405 17 26 chr11 18243910 18244026 -130539446 - MIR SINE MIR -73 135 21 270 292 84 45 chr11 18244078 18244256 -130539216 + MIR SINE MIR 13 146 -62 530 305 82 13 chr11 18244718 18244951 -130538521 - MIR SINE MIR -2 260 12 2794 135 17 7 chr11 18246580 18247002 -130536470 - MSTB LTR MaLR 0 426 1 182 315 65 0 chr11 18247510 18247602 -130535870 - L2 LINE L2 -260 3012 2915 191 277 0 0 chr11 18247888 18247935 -130535537 - MIR SINE MIR -11 251 205 184 276 0 92 chr11 18248733 18248809 -130534663 + L2 LINE L2 2978 3046 -226 272 263 11 42 chr11 18248829 18248924 -130534548 - MIR3 SINE MIR -8 200 109 219 218 127 73 chr11 18249008 18249118 -130534354 + L2 LINE L2 3138 3253 -19 507 349 12 0 chr11 18249495 18249661 -130533811 - MIR3 SINE MIR -24 184 17 193 227 80 57 chr11 18249993 18250081 -130533391 - L2 LINE L2 -4 3268 3179 325 291 0 0 chr11 18250268 18250347 -130533125 + L2 LINE L2 3235 3313 0 195 236 45 56 chr11 18250957 18251046 -130532426 + L2 LINE L2 2960 3047 -225 251 245 11 64 chr11 18251108 18251202 -130532270 + L2 LINE L2 3224 3312 -1 485 265 25 107 chr11 18251435 18251631 -130531841 + MIR SINE MIR 37 216 -46 336 345 80 9 chr11 18251657 18251812 -130531660 - MIR3 SINE MIR -66 142 2 1849 146 191 13 chr11 18252499 18252877 -130530595 + MLT2C2 LTR ERVL 1 445 -19 268 163 0 0 chr11 18252900 18252943 -130530529 + MLT2C2 LTR ERVL 422 464 0 284 232 21 53 chr11 18252956 18253051 -130530421 - MIR SINE MIR -54 208 117 1665 157 0 27 chr11 18253286 18253586 -130529886 + AluJo SINE Alu 11 302 -10 1998 91 0 54 chr11 18253695 18254017 -130529455 + AluSx SINE Alu 1 306 0 2260 88 7 0 chr11 18254020 18254327 -130529145 + AluSc SINE Alu 1 309 0 963 209 4 74 chr11 18255517 18255592 -130527880 - MIR SINE MIR 0 262 183 2332 70 0 13 chr11 18255592 18255894 -130527578 - AluY SINE Alu -13 298 1 963 209 4 74 chr11 18255894 18256062 -130527410 - MIR SINE MIR -79 183 36 382 276 126 0 chr11 18256066 18256193 -130527279 - MIR SINE MIR -71 191 49 319 296 22 52 chr11 18256618 18256753 -130526719 + MIR SINE MIR 65 195 -67 647 285 68 51 chr11 18256768 18257009 -130526463 - MIR SINE MIR -10 252 4 345 325 80 25 chr11 18257038 18257403 -130526069 + L2 LINE L2 2659 3090 -182 412 282 167 0 chr11 18257761 18257972 -130525500 - MIR3 SINE MIR 0 262 3 1752 140 16 32 chr11 18258208 18258522 -130524950 - AluJb SINE Alu -3 309 1 654 249 30 18 chr11 18258808 18258977 -130524495 + MIR SINE MIR 2 172 -90 1131 229 108 39 chr11 18259008 18259340 -130524132 + MLT1D LTR MaLR 1 355 -150 817 203 101 65 chr11 18259392 18259668 -130523804 + MLT1C LTR MaLR 164 449 -18 370 361 16 0 chr11 18259786 18259908 -130523564 + L2 LINE L2 3190 3313 0 499 252 44 31 chr11 18259911 18260070 -130523402 + L2 LINE L2 2891 3051 -221 310 260 83 0 chr11 18261107 18261203 -130522269 - MIR SINE MIR -102 160 57 3244 164 38 23 chr11 18261209 18261817 -130521655 - L1MC3 LINE L1 -8 7777 7161 889 259 92 76 chr11 18262181 18262398 -130521074 + MLT1J LTR MaLR 1 213 -298 2511 37 0 0 chr11 18262398 18262693 -130520779 + AluY SINE Alu 1 295 -16 889 259 92 76 chr11 18262693 18262891 -130520581 + MLT1J LTR MaLR 213 426 -85 1897 164 41 41 chr11 18262891 18263281 -130520191 - MLT1B LTR MaLR 0 390 1 889 259 92 76 chr11 18263281 18263323 -130520149 + MLT1J LTR MaLR 426 466 -45 483 256 43 34 chr11 18263487 18263604 -130519868 - L2 LINE L2 -1 3271 3154 348 208 100 83 chr11 18264308 18264428 -130519044 + MIR SINE MIR 49 170 -92 345 248 109 0 chr11 18264478 18264579 -130518893 - MIR SINE MIR 0 262 151 971 154 17 0 chr11 18264909 18265084 -130518388 + L1MB3 LINE L1 5997 6174 -9 274 232 0 59 chr11 18265310 18265404 -130518068 - MIR SINE MIR -108 100 14 406 284 55 8 chr11 18267487 18267614 -130515858 + MIR SINE MIR 7 139 -123 287 282 218 21 chr11 18267645 18267787 -130515685 - MER5A DNA MER1_type -10 179 10 304 178 27 55 chr11 18268582 18268655 -130514817 + L2 LINE L2 3201 3271 -1 978 203 72 23 chr11 18268741 18268905 -130514567 - MSTD LTR MaLR 0 396 241 1023 117 0 0 chr11 18268905 18269067 -130514405 + (GA)n Simple_repeat Simple_repeat 2 163 0 978 203 72 23 chr11 18269067 18269237 -130514235 - MSTD LTR MaLR -155 241 1 555 264 25 6 chr11 18269492 18269651 -130513821 - MER5A DNA MER1_type -9 180 19 311 236 36 55 chr11 18270399 18270509 -130512963 + MIR SINE MIR 36 143 -65 2145 120 48 34 chr11 18270511 18270869 -130512603 + THE1B LTR MaLR 2 364 0 11520 84 21 16 chr11 18270869 18272435 -130511037 + THE1B-int LTR MaLR 1 1574 -6 2078 129 47 47 chr11 18272440 18272804 -130510668 + THE1B LTR MaLR 1 364 0 227 286 0 0 chr11 18272807 18272856 -130510616 + L3 LINE CR1 1518 1566 -11 292 235 163 0 chr11 18273285 18273383 -130510089 + L2 LINE L2 3156 3269 -3 329 362 32 27 chr11 18273852 18274040 -130509432 + L2 LINE L2 3081 3269 -3 379 269 11 0 chr11 18274459 18274552 -130508920 - L2 LINE L2 -2 3270 3177 271 233 0 0 chr11 18274790 18274850 -130508622 + MER117 DNA MER1_type 74 133 -64 276 292 174 66 chr11 18275004 18275367 -130508105 + L2 LINE L2 2871 3272 0 2401 116 41 46 chr11 18275694 18276034 -130507438 + MSTB1 LTR MaLR 21 360 -72 2231 97 0 26 chr11 18276034 18276343 -130507129 - AluSg SINE Alu -9 301 1 2401 116 41 46 chr11 18276343 18276416 -130507056 + MSTB1 LTR MaLR 360 432 0 436 301 46 0 chr11 18276866 18277019 -130506453 - MIR SINE MIR -6 256 97 336 291 35 14 chr11 18277006 18277147 -130506325 + MIR SINE MIR 93 236 -26 * 200 245 0 0 chr11 18277185 18277234 -130506238 - MIR SINE MIR -156 106 58 287 340 1 47 chr11 18277274 18277444 -130506028 + MIR SINE MIR 40 200 -59 385 260 104 26 chr11 18278162 18278316 -130505156 - MIR SINE MIR -66 196 31 240 236 211 0 chr11 18278380 18278503 -130504969 - L3 LINE CR1 -3 1574 1426 843 305 78 66 chr11 18279610 18280607 -130502865 + L2 LINE L2 2302 3311 -2 369 275 179 34 chr11 18280812 18281019 -130502453 - MIR SINE MIR -11 251 15 547 303 56 17 chr11 18281724 18281958 -130501514 - MIR SINE MIR -18 244 2 322 302 48 24 chr11 18282060 18282186 -130501286 - L2 LINE L2 -5 3267 3139 279 268 71 77 chr11 18282296 18282464 -130501008 - MER5A DNA MER1_type -11 167 1 * 292 273 0 0 chr11 18282464 18282538 -130500934 - MIR3 SINE MIR -53 155 82 32 57 0 0 chr11 18282591 18282644 -130500828 + AT_rich Low_complexity Low_complexity 1 53 0 1015 114 228 0 chr11 18283187 18283277 -130500195 + MER30 DNA MER1_type 1 69 -161 240 43 65 0 chr11 18283277 18283323 -130500149 + A-rich Low_complexity Low_complexity 2 50 0 1015 114 228 0 chr11 18283323 18283416 -130500056 + MER30 DNA MER1_type 69 226 -4 192 333 0 10 chr11 18283716 18283812 -130499660 - L2 LINE L2 -1231 2083 1989 258 284 33 95 chr11 18283816 18284027 -130499445 + MIR3 SINE MIR 4 201 -7 202 235 102 92 chr11 18284096 18284194 -130499278 - MIR3 SINE MIR -1 207 109 234 195 322 0 chr11 18284266 18284353 -130499119 + L2 LINE L2 3158 3272 0 504 321 31 0 chr11 18285052 18285214 -130498258 + MIR SINE MIR 84 250 -12 430 255 115 35 chr11 18285776 18285976 -130497496 + MIR SINE MIR 32 247 -15 427 285 17 6 chr11 18286130 18286302 -130497170 - MER5B DNA MER1_type -4 174 1 184 327 0 0 chr11 18286443 18286498 -130496974 - L2 LINE L2 -14 3299 3245 435 278 28 17 chr11 18287058 18287238 -130496234 - L1ME LINE L1 -377 5744 5563 350 311 37 15 chr11 18287251 18287386 -130496086 - MIR3 SINE MIR -67 141 4 562 302 51 24 chr11 18288005 18288260 -130495212 - MIR SINE MIR 0 262 1 1834 179 93 6 chr11 18288328 18288681 -130494791 - MSTD LTR MaLR -12 384 1 312 319 51 7 chr11 18289298 18289437 -130494035 + MIR SINE MIR 17 146 -62 642 296 38 5 chr11 18289511 18289724 -130493748 - MIR SINE MIR -27 235 16 554 179 0 41 chr11 18290545 18290668 -130492804 - MIR SINE MIR -125 137 20 302 227 184 30 chr11 18291102 18291278 -130492194 - MIR SINE MIR -49 213 7 519 260 72 83 chr11 18291380 18291645 -130491827 + MIR SINE MIR 1 262 0 206 310 0 42 chr11 18291648 18291719 -130491753 + L2 LINE L2 3193 3260 -12 1998 84 9 96 chr11 18292088 18292420 -130491052 + AluSx SINE Alu 1 303 -9 392 278 8 38 chr11 18292978 18293111 -130490361 + MLT2C2 LTR ERVL 336 464 0 237 261 29 14 chr11 18293183 18293252 -130490220 + L1MC/D LINE L1 5470 5539 -2246 372 327 90 0 chr11 18293264 18293420 -130490052 - MIR SINE MIR -37 225 56 1253 206 79 20 chr11 18293798 18294124 -130489348 - Tigger7 DNA MER2_type 0 2491 1 207 344 48 42 chr11 18294148 18294337 -130489135 + MIR3 SINE MIR 16 205 -3 470 212 152 0 chr11 18294996 18295147 -130488325 + MIR SINE MIR 89 262 0 424 255 102 19 chr11 18295578 18295735 -130487737 + MIR3 SINE MIR 36 205 -3 4459 269 99 43 chr11 18296196 18297037 -130486435 + HAL1 LINE L1 2 794 -1713 1171 238 148 30 chr11 18297037 18297503 -130485969 - LTR33 LTR ERVL 0 521 1 4459 269 99 43 chr11 18297503 18299034 -130484438 + HAL1 LINE L1 794 2507 0 343 336 48 0 chr11 18299045 18299170 -130484302 + MIR SINE MIR 18 148 -114 335 283 94 49 chr11 18299603 18299847 -130483625 - MIR SINE MIR -6 256 2 225 321 131 15 chr11 18300330 18300643 -130482829 + L2 LINE L2 2697 3060 -212 411 297 149 0 chr11 18300695 18300843 -130482629 - MIR3 SINE MIR -23 185 16 281 306 28 9 chr11 18301495 18301603 -130481869 + MIR SINE MIR 126 235 -27 261 0 0 0 chr11 18301986 18302015 -130481457 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 457 264 8 8 chr11 18302300 18302421 -130481051 - MIR3 SINE MIR -13 195 75 307 236 0 0 chr11 18303190 18303245 -130480227 + MIR SINE MIR 45 99 -109 322 290 38 15 chr11 18303295 18303426 -130480046 + L1P LINE L1 4902 5035 -1111 5254 112 58 50 chr11 18303453 18304401 -130479071 + Tigger3b DNA MER2_type 13 968 -263 315 218 0 0 chr11 18304566 18304621 -130478851 + MIR SINE MIR 45 99 -109 1366 96 32 0 chr11 18304703 18304890 -130478582 + Tigger3b DNA MER2_type 1017 1209 -22 1883 133 0 41 chr11 18304901 18305089 -130478383 - AluSx SINE Alu -30 282 88 2282 104 67 20 chr11 18305089 18305435 -130478037 - THE1B LTR MaLR -2 362 1 11893 100 5 1 chr11 18305435 18307009 -130476463 - THE1B-int LTR MaLR 0 1580 1 2423 93 48 22 chr11 18307009 18307364 -130476108 - THE1B LTR MaLR 0 364 1 1883 133 0 41 chr11 18307364 18307467 -130476005 - AluSx SINE Alu -221 91 1 328 297 54 54 chr11 18307502 18307786 -130475686 + L1MC4a LINE L1 5039 5325 -821 1659 195 60 14 chr11 18307786 18308135 -130475337 - MLT1A1 LTR MaLR 0 365 1 328 297 54 54 chr11 18308135 18308146 -130475326 + L1MC4a LINE L1 5324 5334 -812 2082 198 33 54 chr11 18308148 18308290 -130475182 + MLT1D LTR MaLR 1 145 -360 2482 108 13 24 chr11 18308290 18308669 -130474803 + THE1C LTR MaLR 1 375 0 2082 198 33 54 chr11 18308669 18309041 -130474431 + MLT1D LTR MaLR 145 504 -1 265 171 0 68 chr11 18309061 18309149 -130474323 + L1MC4a LINE L1 5347 5428 -2380 2793 216 100 64 chr11 18309151 18309618 -130473854 + L1ME3 LINE L1 4678 5127 -1035 2018 58 0 4 chr11 18309618 18309858 -130473614 + AluY SINE Alu 62 300 -11 2793 216 100 64 chr11 18309858 18310796 -130472676 + L1ME3 LINE L1 5127 6161 -1 1983 271 42 12 chr11 18310791 18311437 -130472035 + L1MC4a LINE L1 5412 6076 -1732 * 357 284 35 35 chr11 18311589 18311730 -130471742 + MIR SINE MIR 73 213 -49 315 0 0 0 chr11 18312038 18312073 -130471399 + (GGA)n Simple_repeat Simple_repeat 1 35 0 209 278 41 76 chr11 18312612 18312783 -130470689 - MIR3 SINE MIR -66 142 12 740 239 148 17 chr11 18313317 18313547 -130469925 - MIR SINE MIR 0 262 3 610 213 43 24 chr11 18313785 18313949 -130469523 + LTR45 LTR ERV1 359 525 0 269 264 284 0 chr11 18314867 18315015 -130468457 - MIR SINE MIR -53 209 20 194 321 18 36 chr11 18315468 18315580 -130467892 - L2 LINE L2 -25 3247 3138 388 287 30 0 chr11 18315636 18315737 -130467735 - MIR3 SINE MIR -7 201 98 724 239 118 0 chr11 18315755 18315975 -130467497 - MIR SINE MIR 0 262 19 320 262 64 50 chr11 18316809 18316950 -130466522 + HAL1b LINE L1 1204 1346 -2 528 289 111 64 chr11 18317073 18317495 -130465977 + L2 LINE L2 2831 3272 0 308 290 153 32 chr11 18317772 18317896 -130465576 - MIR3 SINE MIR -14 194 56 812 126 6 88 chr11 18317896 18318055 -130465417 - L1MA6 LINE L1 -323 5977 5832 971 126 84 0 chr11 18318055 18318242 -130465230 + L1MA8 LINE L1 6082 6288 -3 681 196 348 10 chr11 18318738 18319034 -130464438 + L1ME4a LINE L1 5725 6120 -1 592 295 62 21 chr11 18319298 18319539 -130463933 - MIR SINE MIR 0 262 12 320 259 38 76 chr11 18319982 18320167 -130463305 + MIR SINE MIR 20 197 -65 393 281 83 109 chr11 18320204 18320509 -130462963 + L2 LINE L2 2706 3010 -262 2240 112 0 10 chr11 18320509 18320822 -130462650 + AluSx SINE Alu 1 310 -2 393 281 83 109 chr11 18320822 18320911 -130462561 + L2 LINE L2 3010 3100 -172 494 270 55 6 chr11 18321800 18321963 -130461509 - MIR SINE MIR -15 247 77 193 313 78 9 chr11 18323266 18323381 -130460091 - MIR SINE MIR -53 209 87 187 358 68 49 chr11 18323483 18323645 -130459827 + L2 LINE L2 2447 2611 -703 1680 178 7 14 chr11 18323703 18323990 -130459482 - AluJo SINE Alu -18 294 10 497 263 0 66 chr11 18324370 18324522 -130458950 + MIR3 SINE MIR 2 143 -65 230 293 121 76 chr11 18324591 18324703 -130458769 + L3 LINE CR1 232 358 -1219 1578 165 25 38 chr11 18324703 18325019 -130458453 + AluSx SINE Alu 1 312 0 230 293 121 76 chr11 18325019 18325104 -130458368 + L3 LINE CR1 358 438 -1139 234 234 0 117 chr11 18325720 18325814 -130457658 + L3 LINE CR1 423 505 -1072 1127 205 139 0 chr11 18325916 18326218 -130457254 + L1ME3 LINE L1 5466 5809 -353 1929 99 55 126 chr11 18326218 18326583 -130456889 + Charlie3 DNA MER1_type 1 2712 0 4900 229 81 29 chr11 18326667 18327004 -130456468 + L1MC4a LINE L1 6230 6548 -1260 456 19 0 0 chr11 18327004 18327057 -130456415 + (CA)n Simple_repeat Simple_repeat 2 54 0 4900 229 81 29 chr11 18327057 18328220 -130455252 + L1MC4a LINE L1 6548 7808 0 563 207 5 0 chr11 18328301 18328414 -130455058 + L1ME3 LINE L1 6054 6162 0 798 229 75 96 chr11 18328615 18328947 -130454525 + L1MC4 LINE L1 6445 6769 -1273 833 148 0 16 chr11 18328970 18329098 -130454374 - FLAM_C SINE Alu -17 126 1 1486 153 37 11 chr11 18329098 18329366 -130454106 + L1MC4 LINE L1 6776 7050 -992 1542 308 124 31 chr11 18329384 18330196 -130453276 + L3 LINE CR1 582 1469 -108 822 246 182 45 chr11 18330529 18330996 -130452476 + MLT1H LTR MaLR 6 536 -13 600 230 9 0 chr11 18331071 18331184 -130452288 - MER90 LTR ERV1 0 614 501 400 138 35 0 chr11 18331184 18331242 -130452230 + AluSp/q SINE Alu 206 265 -48 1944 108 18 11 chr11 18331253 18331539 -130451933 - MER90 LTR ERV1 -325 289 2 348 260 39 19 chr11 18331549 18331653 -130451819 - MIR SINE MIR -70 192 87 * 420 320 77 10 chr11 18331638 18331832 -130451640 + MIR SINE MIR 46 252 -10 344 233 58 0 chr11 18332737 18332823 -130450649 - MIR SINE MIR -109 153 63 309 221 39 13 chr11 18332956 18333033 -130450439 + L2 LINE L2 3227 3305 -8 21 36 0 0 chr11 18334024 18334052 -130449420 + AT_rich Low_complexity Low_complexity 1 28 0 889 247 173 26 chr11 18334052 18334509 -130448963 - L1ME4a LINE L1 -2 6119 5596 218 342 0 0 chr11 18334519 18334595 -130448877 + L3 LINE CR1 1084 1159 -418 316 309 131 38 chr11 18334614 18334850 -130448622 - MIR SINE MIR 0 262 5 187 290 29 43 chr11 18334851 18334920 -130448552 + L3 LINE CR1 1169 1236 -341 2467 193 38 8 chr11 18335010 18335487 -130447985 + MLT1E2 LTR MaLR 136 626 0 1046 180 0 14 chr11 18335489 18335706 -130447766 + L1ME2 LINE L1 5758 5971 -193 24 0 0 0 chr11 18336101 18336125 -130447347 + AT_rich Low_complexity Low_complexity 1 24 0 212 184 26 0 chr11 18336323 18336361 -130447111 - L2 LINE L2 -676 2638 2600 482 275 42 7 chr11 18336361 18336503 -130446969 + MIR SINE MIR 49 195 -67 2862 132 29 5 chr11 18336802 18337219 -130446253 + MSTA LTR MaLR 1 427 -1 650 260 35 0 chr11 18337329 18337502 -130445970 - MIR SINE MIR -1 261 83 407 202 73 81 chr11 18337644 18337668 -130445804 - L2 LINE L2 -4 3268 3245 1772 152 19 16 chr11 18337668 18337977 -130445495 + AluJo SINE Alu 1 310 -2 407 202 73 81 chr11 18337977 18338076 -130445396 - L2 LINE L2 -27 3245 3146 888 270 60 8 chr11 18338129 18338377 -130445095 + MIR SINE MIR 2 262 0 397 321 80 52 chr11 18339030 18339704 -130443768 + L2 LINE L2 2366 3061 -211 233 318 45 9 chr11 18339885 18339995 -130443477 + MIR SINE MIR 93 206 -56 245 341 47 0 chr11 18341043 18341128 -130442344 + MIR SINE MIR 72 160 -102 230 240 0 150 chr11 18343776 18343822 -130439650 + MIR3 SINE MIR 109 134 -74 207 0 0 0 chr11 18343822 18343845 -130439627 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 230 240 0 150 chr11 18343845 18343898 -130439574 + MIR3 SINE MIR 134 193 -15 209 390 11 0 chr11 18343983 18344078 -130439394 + L2 LINE L2 2968 3063 -209 180 0 0 0 chr11 18345161 18345181 -130438291 + (A)n Simple_repeat Simple_repeat 1 20 0 519 324 93 0 chr11 18345192 18345374 -130438098 + MIR3 SINE MIR 5 203 -5 632 329 90 66 chr11 18345919 18346512 -130436960 + L2 LINE L2 2481 3083 -189 391 277 23 73 chr11 18347076 18347263 -130436209 + MIR SINE MIR 12 192 -63 216 0 0 0 chr11 18348168 18348192 -130435280 + (CA)n Simple_repeat Simple_repeat 2 25 0 192 77 0 0 chr11 18348192 18348218 -130435254 + (TC)n Simple_repeat Simple_repeat 1 26 0 1632 181 17 35 chr11 18348264 18348551 -130434921 - AluJo SINE Alu -30 282 1 204 40 0 0 chr11 18348630 18348655 -130434817 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 270 221 182 13 chr11 18349015 18349092 -130434380 - L2 LINE L2 -3 3269 3180 571 265 191 5 chr11 18349094 18349283 -130434189 - MIR SINE MIR -6 256 33 292 100 62 0 chr11 18349316 18349396 -130434076 + (TA)n Simple_repeat Simple_repeat 1 85 0 308 217 29 0 chr11 18349396 18349465 -130434007 - L1MA10 LINE L1 -32 6302 6232 1833 157 18 0 chr11 18349501 18349781 -130433691 - AluJb SINE Alu -23 289 5 286 250 29 0 chr11 18349785 18349853 -130433619 - L1MA10 LINE L1 -90 6244 6175 680 210 82 36 chr11 18350344 18350539 -130432933 + L1MD3 LINE L1 7784 7987 -8 476 256 71 18 chr11 18350567 18350731 -130432741 - MIR SINE MIR -27 235 65 367 264 0 50 chr11 18350857 18350978 -130432494 + MIR SINE MIR 93 207 -55 497 304 110 22 chr11 18351812 18352262 -130431210 + L2 LINE L2 2553 3055 -217 470 305 0 23 chr11 18352269 18352400 -130431072 - MER5B DNA MER1_type -3 175 48 973 184 6 6 chr11 18352417 18352580 -130430892 - FRAM SINE Alu -3 163 1 189 0 0 0 chr11 18352584 18352605 -130430867 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 204 262 0 0 chr11 18352631 18352673 -130430799 - MER5B DNA MER1_type -136 42 1 600 248 153 0 chr11 18352786 18353008 -130430464 - L2 LINE L2 -20 3293 3038 196 271 29 43 chr11 18353061 18353131 -130430341 + L2 LINE L2 3227 3295 -18 255 103 0 0 chr11 18353143 18353182 -130430290 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 345 281 0 34 chr11 18353182 18353271 -130430201 + L2 LINE L2 3186 3271 -1 442 315 62 11 chr11 18353326 18353504 -130429968 - MIR3 SINE MIR -2 206 20 21 57 0 0 chr11 18354340 18354375 -130429097 + AT_rich Low_complexity Low_complexity 1 35 0 256 179 192 26 chr11 18354475 18354553 -130428919 + MER5A DNA MER1_type 75 165 -24 461 243 37 0 chr11 18354589 18354696 -130428776 + MIR SINE MIR 152 262 0 770 197 9 136 chr11 18354859 18354927 -130428545 + MER5A DNA MER1_type 1 76 -113 4857 99 3 2 chr11 18354927 18355570 -130427902 + L1PB1 LINE L1 5506 6149 -2 770 197 9 136 chr11 18355570 18355714 -130427758 + MER5A DNA MER1_type 76 186 -3 530 210 252 0 chr11 18355734 18355877 -130427595 + MER5A DNA MER1_type 10 188 -1 554 245 168 0 chr11 18355949 18356145 -130427327 - MIR SINE MIR -14 248 20 227 213 66 16 chr11 18356498 18356559 -130426913 - L2 LINE L2 0 3272 3209 216 67 0 0 chr11 18356619 18356649 -130426823 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 103 0 0 chr11 18356649 18356678 -130426794 + (TC)n Simple_repeat Simple_repeat 2 30 0 285 343 90 24 chr11 18356685 18356851 -130426621 - L2 LINE L2 -181 3091 2915 646 276 167 0 chr11 18357615 18357807 -130425665 + L2 LINE L2 2824 3047 -266 994 92 0 0 chr11 18357817 18357947 -130425525 + AluSp/q SINE Alu 169 298 -15 2217 119 0 0 chr11 18357951 18358254 -130425218 + AluY SINE Alu 1 303 -8 465 192 88 93 chr11 18358290 18358483 -130424989 + L2 LINE L2 3103 3294 -19 382 283 8 33 chr11 18358490 18358610 -130424862 - MIR SINE MIR -112 150 34 336 326 0 0 chr11 18359360 18359449 -130424023 + MIR SINE MIR 168 256 -6 213 294 336 20 chr11 18360652 18360798 -130422674 + MIR SINE MIR 31 222 -40 207 273 55 0 chr11 18361689 18361744 -130421728 - L2 LINE L2 -47 3225 3168 301 309 43 11 chr11 18361839 18361933 -130421539 + L2 LINE L2 3138 3234 -38 * 489 280 98 26 chr11 18361927 18362120 -130421352 + MIR SINE MIR 51 257 -5 367 315 184 27 chr11 18362241 18362692 -130420780 - L2 LINE L2 -189 3083 2550 204 298 0 0 chr11 18363329 18363376 -130420096 + polypurine Low_complexity Low_complexity 3 49 0 521 287 74 32 chr11 18363716 18363932 -130419540 + MIR SINE MIR 28 252 -10 262 224 0 0 chr11 18363914 18363963 -130419509 - L2 LINE L2 -4 3309 3261 * 263 316 0 13 chr11 18364718 18364794 -130418678 + L2 LINE L2 3234 3308 -5 544 325 11 26 chr11 18365389 18365580 -130417892 + MIR3 SINE MIR 4 191 -17 412 257 181 21 chr11 18365597 18365741 -130417731 + MER5A DNA MER1_type 23 189 0 394 237 193 0 chr11 18366403 18366517 -130416955 + L2 LINE L2 3137 3272 0 315 237 79 0 chr11 18367499 18367575 -130415897 - L2 LINE L2 0 3313 3232 409 306 218 16 chr11 18367655 18367907 -130415565 + L2 LINE L2 3010 3312 -1 694 265 114 9 chr11 18367947 18368166 -130415306 + MIR SINE MIR 11 252 -10 571 303 29 6 chr11 18368576 18368751 -130414721 + MIR3 SINE MIR 3 181 -27 182 296 83 65 chr11 18369386 18369494 -130413978 - L2 LINE L2 -16 3256 3147 1264 141 11 0 chr11 18369644 18369829 -130413643 + MER5A DNA MER1_type 3 189 0 548 66 13 0 chr11 18370012 18370088 -130413384 + L1PA5 LINE L1 6078 6154 0 557 219 45 22 chr11 18371342 18371514 -130411958 + MIR SINE MIR 20 192 -66 23 68 0 0 chr11 18371976 18372020 -130411452 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr11 18373067 18373092 -130410380 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1014 192 77 34 chr11 18373132 18373366 -130410106 + AluJo SINE Alu 29 272 -40 194 0 0 37 chr11 18373366 18373393 -130410079 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 443 271 99 7 chr11 18373407 18373558 -130409914 - MIR3 SINE MIR 0 208 44 571 253 27 54 chr11 18373601 18373787 -130409685 - L2 LINE L2 0 3313 3133 362 312 0 0 chr11 18374175 18374268 -130409204 + MIR3 SINE MIR 82 174 -34 796 278 70 20 chr11 18374778 18375157 -130408315 + L1ME4a LINE L1 5582 5988 -133 1918 177 0 16 chr11 18375157 18375474 -130407998 + AluSx SINE Alu 1 312 0 796 278 70 20 chr11 18375474 18375537 -130407935 + L1ME4a LINE L1 5988 6046 -75 25 0 0 0 chr11 18375576 18375601 -130407871 + AT_rich Low_complexity Low_complexity 1 25 0 293 155 84 42 chr11 18375637 18375708 -130407764 + L3 LINE CR1 1364 1437 -140 413 239 11 11 chr11 18376311 18376399 -130407073 - MIR SINE MIR -94 114 27 205 370 17 44 chr11 18378230 18378411 -130405061 + MIR SINE MIR 36 211 -51 938 152 0 0 chr11 18378508 18378646 -130404826 - FRAM SINE Alu -39 137 1 437 290 70 70 chr11 18378907 18379107 -130404365 - L1MC4 LINE L1 -19 8023 7824 1097 85 6 6 chr11 18379111 18379275 -130404197 - L1MB3 LINE L1 0 6183 6020 3683 136 16 11 chr11 18379279 18379925 -130403547 - L1MB3 LINE L1 -254 5917 5269 * 5315 241 52 22 chr11 18379913 18381694 -130401778 - L1MB3 LINE L1 -1391 4755 2922 1184 258 74 13 chr11 18381690 18381823 -130401649 - L1MC4 LINE L1 0 8042 7918 * 2326 113 0 0 chr11 18381823 18382134 -130401338 - AluY SINE Alu 0 311 1 1184 258 74 13 chr11 18382134 18382462 -130401010 - L1MC4 LINE L1 -124 7918 7553 649 176 24 0 chr11 18382463 18382588 -130400884 - L1ME LINE L1 -5937 133 6 1073 190 45 0 chr11 18383292 18383492 -130399980 - MER3 DNA MER1_type 0 209 1 762 103 9 0 chr11 18383597 18383704 -130399768 + AluSp SINE Alu 26 133 -180 1283 120 0 10 chr11 18383721 18383913 -130399559 + AluSq SINE Alu 121 310 -3 416 272 0 10 chr11 18384009 18384112 -130399360 - MIR SINE MIR -60 148 47 553 350 50 0 chr11 18384119 18384319 -130399153 + MIR SINE MIR 23 232 -30 253 357 45 9 chr11 18385036 18385148 -130398324 - L2 LINE L2 -1 3271 3156 559 303 63 6 chr11 18385626 18385801 -130397671 + MIR SINE MIR 64 248 -14 1318 173 148 0 chr11 18385855 18386092 -130397380 - AluSg SINE Alu -6 304 33 252 262 2 17 chr11 18386230 18386313 -130397159 - MIR SINE MIR -66 142 73 223 325 152 26 chr11 18387815 18388059 -130395413 - L2 LINE L2 -261 3011 2739 530 231 77 8 chr11 18388069 18388186 -130395286 - L2 LINE L2 0 3272 3148 224 333 38 38 chr11 18388245 18388350 -130395122 + L2 LINE L2 3168 3272 0 296 374 26 53 chr11 18388367 18388557 -130394915 - L2 LINE L2 -571 2743 2559 225 368 32 0 chr11 18389250 18389345 -130394127 - MIR SINE MIR -65 143 46 361 256 104 16 chr11 18389609 18389734 -130393738 + MIR3 SINE MIR 11 146 -62 251 256 144 0 chr11 18390119 18390209 -130393263 + L2 LINE L2 3211 3313 0 477 333 80 33 chr11 18390348 18390771 -130392701 + L2 LINE L2 1528 1970 -1344 606 302 45 6 chr11 18391553 18391732 -130391740 - L2 LINE L2 0 3313 3128 310 238 21 119 chr11 18392749 18392892 -130390580 + MIR SINE MIR 79 207 -55 220 327 112 74 chr11 18393025 18393337 -130390135 + L2 LINE L2 2942 3265 -7 422 309 75 32 chr11 18394269 18394457 -130389015 + MIR SINE MIR 52 247 -15 630 242 188 4 chr11 18404260 18404500 -130378972 + MLT1J2 LTR MaLR 158 441 -9 428 310 17 0 chr11 18404773 18404889 -130378583 + L3 LINE CR1 1427 1544 -33 295 287 19 19 chr11 18405788 18405896 -130377576 - MIR3 SINE MIR -10 198 91 210 143 0 0 chr11 18405996 18406031 -130377441 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 180 97 0 0 chr11 18406042 18406073 -130377399 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 841 153 0 29 chr11 18406073 18406199 -130377273 - FLAM_C SINE Alu -188 124 1 221 245 0 0 chr11 18406226 18406277 -130377195 + CT-rich Low_complexity Low_complexity 1 51 0 282 282 0 0 chr11 18406310 18406441 -130377031 + CT-rich Low_complexity Low_complexity 1 131 0 223 359 40 48 chr11 18407274 18407577 -130375895 + L2 LINE L2 2751 3064 -208 322 308 75 8 chr11 18408293 18408426 -130375046 - MIR SINE MIR -74 188 47 1185 113 65 0 chr11 18408444 18408612 -130374860 - AluSg/x SINE Alu 0 312 134 1956 74 7 52 chr11 18408612 18408883 -130374589 - AluSx SINE Alu -15 297 39 365 241 37 0 chr11 18410554 18410662 -130372810 + MIR3 SINE MIR 60 171 -37 534 189 29 14 chr11 18411460 18411893 -130371579 + (TG)n Simple_repeat Simple_repeat 1 439 0 240 150 38 0 chr11 18411940 18412020 -130371452 + (TG)n Simple_repeat Simple_repeat 1 83 0 418 204 27 0 chr11 18412035 18412300 -130371172 + (TG)n Simple_repeat Simple_repeat 1 272 0 258 254 105 26 chr11 18413171 18413285 -130370187 + MIR3 SINE MIR 8 130 -78 183 329 47 12 chr11 18413919 18414004 -130369468 - MER5A DNA MER1_type -75 114 27 327 314 97 0 chr11 18414104 18414228 -130369244 + MIR3 SINE MIR 9 144 -64 252 344 84 0 chr11 18414848 18414979 -130368493 - MIR SINE MIR -37 225 84 16913 102 21 6 chr11 18415766 18418148 -130365324 + Tigger1 DNA MER2_type 1 2418 0 510 351 89 29 chr11 18418167 18418483 -130364989 - L3 LINE CR1 -64 1513 1179 560 240 120 26 chr11 18418669 18418861 -130364611 - MIR SINE MIR -50 212 3 348 24 0 0 chr11 18419197 18419238 -130364234 + (TG)n Simple_repeat Simple_repeat 2 42 0 368 278 77 98 chr11 18419319 18419646 -130363826 - L2 LINE L2 -5 3267 2948 3022 268 93 20 chr11 18419657 18420792 -130362680 + L2 LINE L2 1934 3153 -160 192 267 58 35 chr11 18420832 18420918 -130362554 - MIR SINE MIR -128 134 47 252 241 48 12 chr11 18420950 18421033 -130362439 + L2 LINE L2 3127 3212 -101 285 271 30 68 chr11 18422495 18422628 -130360844 + MIR3 SINE MIR 65 192 -16 276 176 0 0 chr11 18422767 18422818 -130360654 - L2 LINE L2 0 3272 3222 706 275 62 25 chr11 18422894 18423134 -130360338 - MIR SINE MIR -6 256 8 421 288 0 31 chr11 18424324 18424484 -130358988 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 190 347 21 42 chr11 18424516 18424611 -130358861 - MIR3 SINE MIR -1 207 115 * 305 279 22 59 chr11 18424594 18424730 -130358742 + MIR SINE MIR 41 171 -91 206 311 53 67 chr11 18424931 18425140 -130358332 - L2 LINE L2 -214 3058 2853 429 286 110 18 chr11 18425528 18425749 -130357723 - MIR SINE MIR -8 254 11 263 350 50 14 chr11 18425857 18425997 -130357475 - MIR SINE MIR -78 184 40 591 228 129 18 chr11 18426521 18426692 -130356780 - MIR SINE MIR -67 195 6 670 227 29 19 chr11 18427150 18427357 -130356115 - L1PB4 LINE L1 0 6156 5948 716 258 253 21 chr11 18427381 18427761 -130355711 + L2 LINE L2 2846 3313 0 284 240 94 0 chr11 18428477 18428573 -130354899 - MIR SINE MIR -71 137 33 748 259 132 0 chr11 18428759 18428971 -130354501 - MIR SINE MIR -3 259 20 244 268 0 28 chr11 18429184 18429255 -130354217 + G-rich Low_complexity Low_complexity 1 69 0 1142 285 160 11 chr11 18429691 18430472 -130353000 - L2 LINE L2 0 3313 2399 485 245 192 0 chr11 18430616 18430767 -130352705 - MER5A DNA MER1_type 0 189 10 460 346 0 0 chr11 18431521 18431651 -130351821 - MIR3 SINE MIR -3 205 76 613 321 28 36 chr11 18432456 18432705 -130350767 + MIR SINE MIR 2 248 -14 278 280 85 8 chr11 18432944 18433062 -130350410 + MIR3 SINE MIR 33 159 -49 354 232 69 62 chr11 18433559 18433704 -130349768 + MIR SINE MIR 23 171 -71 663 294 112 17 chr11 18433831 18434290 -130349182 - L2 LINE L2 -251 3062 2555 554 262 14 7 chr11 18434341 18434482 -130348990 - MIR SINE MIR 0 262 121 210 37 0 0 chr11 18435091 18435118 -130348354 + (CA)n Simple_repeat Simple_repeat 2 28 0 273 128 0 0 chr11 18436046 18436093 -130347379 + (CA)n Simple_repeat Simple_repeat 2 48 0 261 0 0 0 chr11 18436357 18436386 -130347086 + (CA)n Simple_repeat Simple_repeat 1 29 0 359 231 32 64 chr11 18436680 18436836 -130346636 + MIR3 SINE MIR 4 154 -54 236 286 14 0 chr11 18437561 18437631 -130345841 + MIR SINE MIR 30 100 -108 329 248 48 0 chr11 18438164 18438269 -130345203 - MIR3 SINE MIR -18 190 81 309 269 28 21 chr11 18438821 18438962 -130344510 + (CA)n Simple_repeat Simple_repeat 1 142 0 377 147 27 0 chr11 18440020 18440095 -130343377 + GA-rich Low_complexity Low_complexity 2 78 0 27 29 0 0 chr11 18440428 18440462 -130343010 + GC_rich Low_complexity Low_complexity 1 34 0 229 246 53 9 chr11 18440769 18440883 -130342589 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 215 132 26 0 chr11 18440878 18440916 -130342556 + (CCG)n Simple_repeat Simple_repeat 2 40 0 * 22 0 0 0 chr11 18441122 18441144 -130342328 + GC_rich Low_complexity Low_complexity 1 22 0 432 0 0 0 chr11 18441461 18441509 -130341963 + (CA)n Simple_repeat Simple_repeat 2 49 0 233 349 48 16 chr11 18441941 18442067 -130341405 - L2 LINE L2 -1 3271 3142 183 186 0 0 chr11 18442674 18442717 -130340755 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 432 55 0 0 chr11 18442831 18442886 -130340586 + (CA)n Simple_repeat Simple_repeat 2 56 0 729 218 13 19 chr11 18444095 18444251 -130339221 + MIR SINE MIR 13 167 -95 1047 170 40 58 chr11 18444924 18445147 -130338325 - MER20 DNA MER1_type 0 219 1 268 281 64 29 chr11 18445148 18445257 -130338215 + MIR SINE MIR 34 144 -64 916 208 29 0 chr11 18445763 18446004 -130337468 - MER69 DNA AcHobo 0 2526 2279 3776 184 47 38 chr11 18446297 18446910 -130336562 + L1MB7 LINE L1 4656 5262 -922 2121 122 35 40 chr11 18446910 18447287 -130336185 - THE1C LTR MaLR 0 375 1 3776 184 47 38 chr11 18447287 18447829 -130335643 + L1MB7 LINE L1 5262 5837 -347 2273 94 7 0 chr11 18447829 18448128 -130335344 + AluSx SINE Alu 1 301 -11 3776 184 47 38 chr11 18448128 18448461 -130335011 + L1MB7 LINE L1 5837 6165 -19 273 323 72 30 chr11 18448606 18448773 -130334699 - MIR3 SINE MIR -1 207 43 2691 189 14 12 chr11 18449158 18449810 -130333662 - MER69 DNA AcHobo -263 2263 1611 735 244 159 7 chr11 18449811 18450082 -130333390 - MER69 DNA AcHobo -2214 312 1 257 254 17 0 chr11 18450407 18450466 -130333006 + MIR SINE MIR 8 67 -195 2098 106 0 4 chr11 18450528 18450803 -130332669 - AluSg SINE Alu -31 279 6 743 244 28 6 chr11 18451250 18451430 -130332042 + MER91A DNA MER1_type 12 195 -1 359 380 18 22 chr11 18451467 18451693 -130331779 + L2 LINE L2 3051 3275 -38 313 337 127 42 chr11 18451686 18452294 -130331178 + L2 LINE L2 2581 3232 -40 * 267 31 0 0 chr11 18452730 18452762 -130330710 + (TG)n Simple_repeat Simple_repeat 1 32 0 280 244 22 44 chr11 18452779 18452869 -130330603 + L2 LINE L2 2997 3084 -188 394 244 0 84 chr11 18453255 18453386 -130330086 + MER5B DNA MER1_type 4 123 -55 22 35 0 0 chr11 18454829 18454858 -130328614 + GC_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr11 18455416 18455450 -130328022 + GC_rich Low_complexity Low_complexity 1 34 0 264 346 47 16 chr11 18457222 18457349 -130326123 + MIR SINE MIR 54 184 -78 1381 247 211 24 chr11 18458069 18458947 -130324525 - L2 LINE L2 -14 3299 2252 1051 358 98 8 chr11 18458948 18459689 -130323783 + L2 LINE L2 2502 3313 0 297 200 0 57 chr11 18460032 18460102 -130323370 + L2 LINE L2 3248 3313 0 757 274 54 68 chr11 18461879 18462215 -130321257 - L2 LINE L2 -36 3277 2947 249 256 26 13 chr11 18462221 18462299 -130321173 - L2 LINE L2 -21 3251 3173 2069 107 0 29 chr11 18462375 18462683 -130320789 - AluSx SINE Alu -13 299 1 241 297 22 44 chr11 18463480 18463571 -130319901 + L3b LINE CR1 1295 1383 -200 432 344 65 65 chr11 18466046 18466401 -130317071 - L2 LINE L2 -14 3258 2904 394 319 30 0 chr11 18466574 18466709 -130316763 + MIR3 SINE MIR 16 154 -54 495 310 97 9 chr11 18467144 18467360 -130316112 + MIR SINE MIR 28 262 0 287 259 9 30 chr11 18467799 18467915 -130315557 - MIR SINE MIR -79 129 37 569 271 52 18 chr11 18468376 18468605 -130314867 - L1MC5 LINE L1 -48 7913 7677 1312 198 77 75 chr11 18468607 18468979 -130314493 - L1MC5 LINE L1 -191 7770 7400 244 0 0 0 chr11 18468979 18469006 -130314466 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2167 51 0 11 chr11 18469006 18469280 -130314192 - AluY SINE Alu -1 310 14 1312 198 77 75 chr11 18469280 18469436 -130314036 - L1MC5 LINE L1 -560 7401 7240 1170 346 74 31 chr11 18469456 18470471 -130313001 + L2 LINE L2 1785 2842 -472 199 191 86 142 chr11 18470537 18470699 -130312773 + L2 LINE L2 2932 3084 -188 * 210 186 264 70 chr11 18470692 18470821 -130312651 + MIR SINE MIR 109 262 0 1377 243 53 49 chr11 18470944 18471022 -130312450 + MLT1J LTR MaLR 6 82 -429 1820 191 34 16 chr11 18471022 18471405 -130312067 - MLT1B LTR MaLR 0 390 1 1377 243 53 49 chr11 18471405 18471611 -130311861 + MLT1J LTR MaLR 82 295 -216 2268 184 108 17 chr11 18471611 18472072 -130311400 + MLT1D LTR MaLR 3 505 0 1377 243 53 49 chr11 18472072 18472218 -130311254 + MLT1J LTR MaLR 295 439 -72 480 273 21 105 chr11 18472592 18472739 -130310733 + MIR SINE MIR 28 150 -112 1647 155 14 14 chr11 18472739 18473056 -130310416 + AluJb SINE Alu 1 317 0 480 273 21 105 chr11 18473056 18473145 -130310327 + MIR SINE MIR 150 245 -17 1359 146 9 131 chr11 18473156 18473477 -130309995 + AluJo SINE Alu 1 282 -30 369 0 0 0 chr11 18473495 18473536 -130309936 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2531 140 16 21 chr11 18473805 18474240 -130309232 + L1MC1 LINE L1 5896 6328 -5 1019 253 164 55 chr11 18474252 18474746 -130308726 - MLT1H LTR MaLR -1 548 1 299 295 62 0 chr11 18474746 18474858 -130308614 + MIR SINE MIR 141 259 -3 509 222 185 0 chr11 18475292 18475427 -130308045 - MIR SINE MIR -74 188 29 326 157 43 14 chr11 18476773 18476843 -130306629 - L2 LINE L2 -3 3310 3239 191 222 192 71 chr11 18477321 18477420 -130306052 - MIR SINE MIR -27 235 125 611 220 99 7 chr11 18477583 18477724 -130305748 - MIR SINE MIR -105 157 4 209 287 33 57 chr11 18477792 18477914 -130305558 - L2 LINE L2 -81 3191 3073 620 317 24 5 chr11 18477926 18478131 -130305341 + MIR SINE MIR 50 258 -4 279 210 290 0 chr11 18478740 18478840 -130304632 - L2 LINE L2 -220 3052 2924 214 330 6 22 chr11 18479712 18479891 -130303581 + C-rich Low_complexity Low_complexity 2 177 0 262 286 0 29 chr11 18480347 18480417 -130303055 + MIR3 SINE MIR 109 176 -32 651 284 86 0 chr11 18481135 18481357 -130302115 + MIR SINE MIR 20 260 -2 247 326 69 21 chr11 18481637 18481781 -130301691 - L3 LINE CR1 -1283 294 144 1380 204 204 15 chr11 18482297 18482753 -130300719 - MLT1F LTR MaLR 0 542 1 311 250 25 25 chr11 18482766 18482846 -130300626 + L2 LINE L2 3193 3272 0 191 323 15 15 chr11 18483413 18483478 -130299994 - L2 LINE L2 -7 3265 3201 1729 229 126 10 chr11 18483611 18484118 -130299354 + MLT1E2 LTR MaLR 12 577 -49 3832 163 34 20 chr11 18484118 18484834 -130298638 - L1MB7 LINE L1 -62 6122 5397 350 172 0 0 chr11 18484840 18484898 -130298574 + MLT1E2 LTR MaLR 594 651 -3 2554 256 44 51 chr11 18485444 18486537 -130296935 - L2 LINE L2 -37 3276 2195 378 274 9 9 chr11 18488102 18488208 -130295264 - MIR SINE MIR -65 143 38 597 295 46 25 chr11 18488502 18488739 -130294733 + MIR SINE MIR 8 249 -13 383 289 19 0 chr11 18489507 18489611 -130293861 - MIR3 SINE MIR -38 170 65 450 289 40 33 chr11 18490486 18490638 -130292834 - MIR SINE MIR -84 178 26 609 299 77 35 chr11 18490932 18491307 -130292165 + LTR16C LTR ERVL 99 489 -2 851 287 85 5 chr11 18492455 18492791 -130290681 + MIR SINE MIR 12 262 0 1848 139 0 7 chr11 18493256 18493544 -130289928 - AluSc SINE Alu -8 301 16 2068 120 3 16 chr11 18494189 18494505 -130288967 - AluSx SINE Alu 0 312 1 1723 135 58 4 chr11 18496103 18496419 -130287053 + AluSx SINE Alu 1 331 0 982 227 62 141 chr11 18497001 18497370 -130286102 - L1ME3A LINE L1 0 6170 5773 2136 109 0 16 chr11 18497370 18497681 -130285791 - AluSx SINE Alu -6 306 1 982 227 62 141 chr11 18497681 18498309 -130285163 - L1ME3A LINE L1 -397 5773 5245 2405 100 129 5 chr11 18498309 18498690 -130284782 + MSTA LTR MaLR 1 428 0 982 227 62 141 chr11 18498690 18498778 -130284694 - L1ME3A LINE L1 -925 5245 5152 * 6399 165 31 21 chr11 18498745 18500249 -130283223 - L1MC1 LINE L1 -5 6328 4810 312 263 25 59 chr11 18500391 18500509 -130282963 + MIR SINE MIR 77 190 -72 184 332 30 84 chr11 18500814 18501016 -130282456 + MIR3 SINE MIR 16 206 -2 301 291 0 68 chr11 18501156 18501259 -130282213 + L1ME LINE L1 5644 5739 -382 442 287 48 108 chr11 18501387 18501655 -130281817 - L2 LINE L2 0 3272 3021 769 305 153 39 chr11 18501752 18502762 -130280710 - L2 LINE L2 -444 2870 1746 1776 148 0 42 chr11 18504313 18504449 -130279023 + AluJb SINE Alu 1 141 -171 2217 109 0 3 chr11 18504449 18504761 -130278711 + AluSq SINE Alu 1 311 -2 1776 148 0 42 chr11 18504761 18504934 -130278538 + AluJb SINE Alu 141 297 -15 489 196 16 119 chr11 18505221 18505375 -130278097 - MER69A DNA AcHobo -2350 176 44 857 207 6 6 chr11 18505375 18505549 -130277923 + MER5B DNA MER1_type 4 177 -1 489 196 16 119 chr11 18505549 18505588 -130277884 - MER69A DNA AcHobo -2482 44 3 258 264 0 0 chr11 18505609 18505662 -130277810 - L2 LINE L2 0 3272 3220 * 326 241 0 58 chr11 18505649 18505736 -130277736 + L2 LINE L2 3191 3272 0 1073 140 0 0 chr11 18506349 18506513 -130276959 + AluSg/x SINE Alu 134 297 -15 22 0 0 0 chr11 18506523 18506545 -130276927 + AT_rich Low_complexity Low_complexity 1 22 0 196 282 24 47 chr11 18507342 18507427 -130276045 + L2 LINE L2 3231 3313 0 2191 90 0 13 chr11 18509901 18510201 -130273271 + AluSx SINE Alu 1 296 -16 329 264 73 36 chr11 18510545 18510655 -130272817 - MIR SINE MIR -66 196 83 407 338 145 11 chr11 18511163 18511432 -130272040 + L2 LINE L2 2228 2532 -782 329 227 82 36 chr11 18512008 18512118 -130271354 - MLT1F LTR MaLR -20 522 408 845 185 0 13 chr11 18512138 18512295 -130271177 - FRAM SINE Alu -21 155 1 344 226 43 33 chr11 18512423 18512543 -130270929 - MLT1H LTR MaLR -264 162 57 367 211 92 0 chr11 18512694 18512770 -130270702 + L2 LINE L2 3214 3296 -17 616 303 70 8 chr11 18513035 18513276 -130270196 + MIR SINE MIR 3 258 -4 1672 167 38 7 chr11 18514319 18514441 -130269031 + AluJo SINE Alu 1 118 -184 1905 105 6 94 chr11 18514441 18514579 -130268893 + AluSx SINE Alu 1 150 -162 2227 113 0 0 chr11 18514579 18514889 -130268583 + AluSg SINE Alu 1 310 0 1905 105 6 94 chr11 18514889 18515092 -130268380 + AluSx SINE Alu 150 312 0 1672 167 38 7 chr11 18515092 18515262 -130268210 + AluJo SINE Alu 118 302 0 588 189 33 59 chr11 18515262 18515415 -130268057 - L1MC5 LINE L1 -82 7879 7731 555 186 0 35 chr11 18515471 18515584 -130267888 + FLAM_A SINE Alu 34 142 0 266 0 0 29 chr11 18516188 18516223 -130267249 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2414 55 10 7 chr11 18516800 18517109 -130266363 + AluY SINE Alu 1 310 -1 2252 65 11 0 chr11 18518032 18518334 -130265138 + AluY SINE Alu 1 305 0 1696 138 3 21 chr11 18519223 18519505 -130263967 - L1PA16 LINE L1 -1 6165 5889 369 355 71 54 chr11 18519900 18520366 -130263106 + L2 LINE L2 2373 2847 -467 1946 144 3 0 chr11 18520867 18521151 -130262321 - AluJb SINE Alu -8 304 20 23 54 0 0 chr11 18521673 18521710 -130261762 + AT_rich Low_complexity Low_complexity 1 37 0 242 289 156 22 chr11 18522020 18522200 -130261272 - L2 LINE L2 -5 3308 3105 842 164 0 14 chr11 18522294 18522434 -130261038 + AluJb SINE Alu 1 138 -174 957 248 134 48 chr11 18522441 18522897 -130260575 + L2 LINE L2 2552 3044 -269 244 305 29 99 chr11 18522920 18523027 -130260445 + L1M4 LINE L1 3923 4036 -2110 2007 144 0 0 chr11 18523027 18523305 -130260167 - AluSx SINE Alu -34 278 1 244 305 29 99 chr11 18523305 18523469 -130260003 + L1M4 LINE L1 4036 4175 -1971 836 187 0 0 chr11 18523661 18523795 -130259677 + FRAM SINE Alu 18 151 -25 2144 131 0 6 chr11 18523805 18524118 -130259354 + AluSx SINE Alu 1 311 -1 533 217 112 20 chr11 18524673 18524825 -130258647 - L2 LINE L2 0 3313 3148 383 369 130 42 chr11 18525186 18525571 -130257901 - L2 LINE L2 -9 3263 2845 541 179 94 8 chr11 18525642 18525759 -130257713 - L1PA16 LINE L1 -4 6162 6036 270 365 0 0 chr11 18525869 18525954 -130257518 - L2 LINE L2 -644 2670 2586 189 228 88 0 chr11 18526094 18526151 -130257321 - L2 LINE L2 -899 2415 2354 1588 198 7 3 chr11 18527155 18527443 -130256029 + AluJo SINE Alu 1 289 -23 237 281 96 50 chr11 18527953 18528152 -130255320 - L1ME3A LINE L1 0 6170 5963 21 0 0 0 chr11 18528183 18528204 -130255268 + AT_rich Low_complexity Low_complexity 1 21 0 959 273 56 6 chr11 18528326 18528682 -130254790 - L1ME3A LINE L1 -266 5904 5531 21 57 0 0 chr11 18529587 18529622 -130253850 + AT_rich Low_complexity Low_complexity 1 35 0 2953 155 67 8 chr11 18530358 18530849 -130252623 + Tigger7 DNA MER2_type 3 522 -1965 527 148 45 0 chr11 18530848 18530936 -130252536 + Tigger7 DNA MER2_type 2396 2487 0 * 737 225 140 9 chr11 18531001 18531223 -130252249 - MIR SINE MIR -10 252 2 471 284 11 30 chr11 18531458 18531641 -130251831 + MER5A DNA MER1_type 1 178 0 1251 222 26 4 chr11 18531671 18531905 -130251567 - MER8 DNA MER2_type 0 239 1 586 231 66 0 chr11 18532335 18532456 -130251016 - MER5B DNA MER1_type -14 164 36 491 192 121 115 chr11 18532463 18532645 -130250827 + MER5A DNA MER1_type 7 189 0 296 298 138 0 chr11 18532948 18533042 -130250430 + MIR SINE MIR 3 109 -153 221 358 152 6 chr11 18533540 18533705 -130249767 + MIR3 SINE MIR 19 207 -1 43 0 0 0 chr11 18533705 18533748 -130249724 + AT_rich Low_complexity Low_complexity 1 43 0 1866 143 0 14 chr11 18533756 18534049 -130249423 + AluJb SINE Alu 13 301 -11 2178 110 3 7 chr11 18534401 18534710 -130248762 + AluSx SINE Alu 2 309 -3 1610 139 78 48 chr11 18535005 18535299 -130248173 + AluJb SINE Alu 2 304 -8 1995 138 0 7 chr11 18535309 18535607 -130247865 + AluJb SINE Alu 1 296 -16 22 0 0 0 chr11 18535902 18535924 -130247548 + AT_rich Low_complexity Low_complexity 1 22 0 785 261 51 13 chr11 18536319 18536553 -130246919 - MIR SINE MIR 0 262 20 808 136 13 71 chr11 18536554 18536709 -130246763 - FAM SINE Alu -20 165 20 553 266 124 38 chr11 18536770 18537037 -130246435 - L2 LINE L2 0 3313 3024 300 312 111 30 chr11 18537083 18537282 -130246190 - L2 LINE L2 -159 3113 2899 622 216 213 63 chr11 18537590 18537891 -130245581 + L1ME1 LINE L1 2589 2934 -3212 993 87 0 0 chr11 18537897 18538023 -130245449 + AluJb SINE Alu 4 129 -183 332 231 28 37 chr11 18538049 18538157 -130245315 + L1ME1 LINE L1 2946 3052 -3094 3281 201 36 47 chr11 18538162 18538724 -130244748 + L1ME1 LINE L1 4841 5407 -759 2393 112 27 32 chr11 18538724 18539099 -130244373 + THE1C LTR MaLR 3 375 0 3281 201 36 47 chr11 18539099 18539566 -130243906 + L1ME1 LINE L1 5407 6100 -66 1956 143 14 0 chr11 18539566 18539860 -130243612 + AluSx SINE Alu 1 298 -14 3281 201 36 47 chr11 18539860 18539922 -130243550 + L1ME1 LINE L1 6100 6161 -5 200 360 43 50 chr11 18539946 18540107 -130243365 - L2 LINE L2 -556 2758 2599 385 279 54 9 chr11 18540123 18540234 -130243238 + MIR SINE MIR 97 212 -50 4642 150 47 31 chr11 18540878 18541693 -130241779 + MER6 DNA MER2_type 37 864 -1 413 318 121 20 chr11 18542028 18542409 -130241063 - L2 LINE L2 -213 3059 2627 388 253 18 72 chr11 18542430 18542596 -130240876 - MIR SINE MIR -11 251 95 1830 117 20 30 chr11 18542619 18542918 -130240554 - AluJo SINE Alu -16 296 1 810 81 10 0 chr11 18543836 18543935 -130239537 - AluJ/FLAM SINE Alu -210 102 3 592 215 99 36 chr11 18545093 18545208 -130238264 - MER20B DNA MER1_type -50 733 627 2185 49 7 18 chr11 18545208 18545524 -130237948 - AluY SINE Alu 0 313 1 592 215 99 36 chr11 18545524 18545630 -130237842 - MER20B DNA MER1_type -156 627 497 2093 152 3 20 chr11 18545637 18545992 -130237480 - MER65C LTR ERV1 -1 460 112 787 169 0 16 chr11 18545994 18546118 -130237354 - FLAM_C SINE Alu -21 122 1 213 119 0 0 chr11 18546119 18546161 -130237311 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1882 61 16 8 chr11 18546162 18546407 -130237065 - AluY SINE Alu -26 285 39 21 57 0 0 chr11 18546536 18546571 -130236901 + AT_rich Low_complexity Low_complexity 1 35 0 1831 143 59 0 chr11 18546594 18546881 -130236591 + AluSx SINE Alu 1 304 -8 1837 159 0 14 chr11 18547231 18547542 -130235930 + AluJb SINE Alu 1 307 0 475 266 120 16 chr11 18548189 18548381 -130235091 + MIR SINE MIR 51 262 0 191 203 16 0 chr11 18549063 18549127 -130234345 + CT-rich Low_complexity Low_complexity 3 67 0 1661 189 54 3 chr11 18549129 18549305 -130234167 - AluJo SINE Alu 0 312 113 199 0 65 0 chr11 18549305 18549336 -130234136 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1661 189 54 3 chr11 18549336 18549456 -130234016 - AluJo SINE Alu -199 113 1 356 277 97 15 chr11 18549493 18549688 -130233784 - L1M4 LINE L1 -2610 3536 3326 301 266 80 62 chr11 18549914 18550027 -130233445 - L2 LINE L2 -8 3264 3150 225 316 71 10 chr11 18551330 18551428 -130232044 + MIR SINE MIR 118 221 -41 426 234 15 109 chr11 18551847 18552048 -130231424 - MER5A DNA MER1_type -1 188 7 207 69 0 0 chr11 18552227 18552256 -130231216 + (TC)n Simple_repeat Simple_repeat 2 30 0 2155 114 0 0 chr11 18552256 18552537 -130230935 - AluSx SINE Alu -31 281 1 310 242 233 41 chr11 18552736 18552831 -130230641 + MIR SINE MIR 2 77 -185 375 41 0 0 chr11 18552831 18552880 -130230592 + (TG)n Simple_repeat Simple_repeat 2 50 0 310 242 233 41 chr11 18552880 18553003 -130230469 + MIR SINE MIR 77 262 0 333 0 0 0 chr11 18553625 18553662 -130229810 + (CA)n Simple_repeat Simple_repeat 2 38 0 2745 143 26 5 chr11 18554317 18554736 -130228736 + MSTA LTR MaLR 1 428 0 1571 178 0 43 chr11 18554768 18555071 -130228401 + AluJo SINE Alu 13 302 -10 291 287 21 0 chr11 18555785 18555879 -130227593 + MIR SINE MIR 159 254 -8 2821 123 59 65 chr11 18556042 18556276 -130227196 + MER41C LTR ERV1 1 235 -319 2191 103 0 20 chr11 18556276 18556577 -130226895 + AluSg SINE Alu 1 295 -15 2821 123 59 65 chr11 18556577 18556622 -130226850 + MER41C LTR ERV1 235 279 -275 2196 126 7 0 chr11 18556622 18556932 -130226540 + AluSq SINE Alu 1 312 -1 2821 123 59 65 chr11 18556932 18557145 -130226327 + MER41C LTR ERV1 279 491 -63 10610 36 18 1 chr11 18607145 18609106 -130174366 + L1PA6 LINE L1 4178 6153 -1 12966 28 1 0 chr11 18609482 18610985 -130172487 + L1P LINE L1 3622 5125 -1021 2838 123 58 65 chr11 18611085 18611300 -130172172 - MER41C LTR ERV1 -61 493 278 2152 126 10 0 chr11 18611300 18611609 -130171863 - AluSq SINE Alu -1 312 1 2838 123 58 65 chr11 18611609 18611654 -130171818 - MER41C LTR ERV1 -276 278 234 2191 103 0 20 chr11 18611654 18611955 -130171517 - AluSg SINE Alu -15 295 1 2838 123 58 65 chr11 18611955 18612189 -130171283 - MER41C LTR ERV1 -320 234 1 279 287 21 0 chr11 18612352 18612446 -130171026 - MIR SINE MIR -8 254 159 1571 178 0 43 chr11 18613160 18613463 -130170009 - AluJo SINE Alu -10 302 13 1537 154 39 4 chr11 18613495 18613755 -130169717 - MSTA LTR MaLR 0 428 160 7898 30 5 5 chr11 18613855 18614869 -130168603 + L1PA4 LINE L1 5132 6147 -8 5945 238 11 24 chr11 18614900 18615272 -130168200 + L1 LINE L1 2254 2629 -3517 2046 132 3 3 chr11 18615272 18615583 -130167889 + AluSx SINE Alu 1 311 -1 5945 238 11 24 chr11 18615583 18616835 -130166637 + L1 LINE L1 2629 3857 -2289 199 305 102 23 chr11 18617628 18617756 -130165716 - MIR3 SINE MIR -62 146 9 330 282 83 26 chr11 18618770 18618926 -130164546 - MIR SINE MIR -70 192 28 194 363 12 0 chr11 18619419 18619499 -130163973 + L2 LINE L2 3179 3259 -54 210 329 42 54 chr11 18619507 18619674 -130163798 - MIR3 SINE MIR -37 171 7 341 325 115 24 chr11 18619739 18619991 -130163481 + MLT1J LTR MaLR 7 281 -230 1215 239 39 24 chr11 18620100 18620430 -130163042 + MER2 DNA MER2_type 2 336 -9 915 310 54 35 chr11 18620726 18620911 -130162561 + LTR33 LTR ERVL 31 211 -310 2650 139 31 10 chr11 18620911 18621329 -130162143 - MSTA LTR MaLR -1 427 1 915 310 54 35 chr11 18621329 18621604 -130161868 + LTR33 LTR ERVL 211 500 -21 2678 111 6 0 chr11 18622679 18623041 -130160431 - L1PB1 LINE L1 -2 6149 5786 532 267 9 8 chr11 18623042 18623233 -130160239 - L1PB1 LINE L1 -480 5694 5500 7400 178 10 11 chr11 18623440 18625226 -130158246 - L1P5 LINE L1 -557 5594 3814 1387 228 23 6 chr11 18626615 18626966 -130156506 + L1MB4 LINE L1 5824 6180 0 239 333 0 0 chr11 18627795 18627861 -130155611 + L2 LINE L2 3121 3186 -86 254 274 145 43 chr11 18629099 18629216 -130154256 - L2 LINE L2 -5 3267 3139 7293 214 18 25 chr11 18630575 18632516 -130150956 + L1M2 LINE L1 2504 4522 -2326 4909 52 12 5 chr11 18632622 18633215 -130150257 - L1PA4 LINE L1 -1 6154 5558 14077 75 4 8 chr11 18633215 18635052 -130148420 - L1P LINE L1 -4316 1830 1 10932 199 14 9 chr11 18635052 18637800 -130145672 + L1PB1 LINE L1 2875 5637 -514 2762 109 3 0 chr11 18637818 18638185 -130145287 + L1PB1 LINE L1 5782 6149 -2 792 287 124 38 chr11 18639247 18639505 -130143967 - LTR33 LTR ERVL -10 511 277 2537 153 36 14 chr11 18639505 18639924 -130143548 + MSTA LTR MaLR 1 428 0 792 287 124 38 chr11 18639924 18640108 -130143364 - LTR33 LTR ERVL -244 277 31 232 331 42 54 chr11 18640730 18640896 -130142576 + MIR3 SINE MIR 8 171 -37 282 388 20 10 chr11 18640908 18641006 -130142466 - L2 LINE L2 -40 3232 3134 306 366 57 0 chr11 18641484 18641659 -130141813 + MIR SINE MIR 15 199 -63 1242 231 35 9 chr11 18644849 18645196 -130138276 + L1MB4 LINE L1 5825 6180 0 2043 114 7 17 chr11 18646500 18646537 -130136935 - AluSc SINE Alu -14 295 259 378 0 0 0 chr11 18646537 18646579 -130136893 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2043 114 7 17 chr11 18646579 18646839 -130136633 - AluSc SINE Alu -50 259 1 244 263 81 124 chr11 18647661 18647870 -130135602 - L2 LINE L2 -5 3267 3068 214 279 18 90 chr11 18649988 18650042 -130133430 + L2 LINE L2 631 675 -2639 2783 98 14 0 chr11 18650042 18650398 -130133074 - THE1B LTR MaLR -3 361 1 214 279 18 90 chr11 18650398 18650454 -130133018 + L2 LINE L2 675 733 -2581 1954 234 99 79 chr11 18650455 18651416 -130132056 - L1MD2 LINE L1 -1 6358 5324 942 302 129 22 chr11 18651416 18652065 -130131407 + L2 LINE L2 1122 1840 -1474 198 0 0 0 chr11 18652213 18652235 -130131237 + (TA)n Simple_repeat Simple_repeat 2 23 0 201 259 0 0 chr11 18652395 18652453 -130131019 + (TA)n Simple_repeat Simple_repeat 2 59 0 2613 84 6 11 chr11 18652488 18653026 -130130446 - L1PA10 LINE L1 -1 6167 5520 2382 112 71 0 chr11 18653621 18653961 -130129511 - THE1B LTR MaLR 0 364 1 962 310 86 7 chr11 18654288 18654720 -130128752 - LTR33 LTR ERVL -16 505 40 1443 217 35 26 chr11 18655025 18655366 -130128106 - MER2 DNA MER2_type 0 344 1 299 300 0 0 chr11 18655568 18655648 -130127824 - MLT1J2 LTR MaLR -302 148 69 213 389 0 0 chr11 18655858 18655948 -130127524 + MIR3 SINE MIR 82 171 -37 1714 176 82 17 chr11 18655957 18656127 -130127345 - THE1C LTR MaLR 0 375 218 213 39 0 0 chr11 18656127 18656153 -130127319 + (GA)n Simple_repeat Simple_repeat 1 26 0 1714 176 82 17 chr11 18656153 18656334 -130127138 - THE1C LTR MaLR -157 218 1 277 289 24 24 chr11 18656336 18656419 -130127053 - L2 LINE L2 -52 3261 3179 259 302 111 35 chr11 18657045 18657217 -130126255 + MIR SINE MIR 15 199 -63 225 314 29 0 chr11 18657834 18657904 -130125568 - L2 LINE L2 0 3313 3242 2536 189 40 7 chr11 18657922 18658366 -130125106 - MER66B LTR ERV1 -27 459 1 712 163 0 24 chr11 18658367 18658490 -130124982 - MER66B LTR ERV1 -366 120 1 243 303 34 11 chr11 18658861 18658950 -130124522 + MIR SINE MIR 98 188 -74 3909 127 25 11 chr11 18660269 18660906 -130122566 + Tigger3(Golem) DNA MER2_type 2380 3025 -4 29 28 0 0 chr11 18661287 18661323 -130122149 + AT_rich Low_complexity Low_complexity 1 36 0 242 268 86 129 chr11 18661426 18661635 -130121837 - L2 LINE L2 -5 3267 3068 208 238 0 125 chr11 18662020 18662100 -130121372 + MIR3 SINE MIR 4 73 -135 1678 35 5 5 chr11 18662872 18663073 -130120399 - L1PA5 LINE L1 -214 5940 5740 1522 63 11 11 chr11 18663073 18663261 -130120211 + L1PA5 LINE L1 5964 6154 0 32115 124 59 10 chr11 18663528 18668384 -130115088 + L1PB1 LINE L1 3 4622 -1529 189 0 0 0 chr11 18668384 18668405 -130115067 + (TAA)n Simple_repeat Simple_repeat 2 22 0 32115 124 59 10 chr11 18668405 18669044 -130114428 + L1PB1 LINE L1 4622 5229 -922 264 30 0 0 chr11 18669044 18669077 -130114395 + (CA)n Simple_repeat Simple_repeat 1 33 0 32115 124 59 10 chr11 18669077 18669437 -130114035 + L1PB1 LINE L1 5229 6151 0 460 224 0 54 chr11 18669437 18669584 -130113888 - L1MA7 LINE L1 -151 6140 6002 * 2185 249 49 51 chr11 18669582 18670054 -130113418 - L1M4 LINE L1 -2203 3943 3472 1997 94 86 0 chr11 18670054 18670321 -130113151 + AluSx SINE Alu 1 290 -22 2185 249 49 51 chr11 18670321 18670747 -130112725 - L1M4 LINE L1 -2674 3472 3047 910 270 32 47 chr11 18670740 18671158 -130112314 - L1M4 LINE L1 -2572 3574 3162 * 2394 57 0 60 chr11 18671158 18671474 -130111998 - AluY SINE Alu -14 297 1 910 270 32 47 chr11 18671474 18671522 -130111950 - L1M4 LINE L1 -2984 3162 3115 3177 211 53 2 chr11 18671523 18672140 -130111332 - MER44D DNA MER2_type 0 605 85 498 152 8 16 chr11 18672152 18672277 -130111195 - L1 LINE L1 -2918 3228 3105 * 5000 161 22 69 chr11 18672273 18673159 -130110313 + L1MA8 LINE L1 5227 6054 -237 2177 127 7 0 chr11 18673159 18673459 -130110013 - AluSx SINE Alu -10 302 1 5000 161 22 69 chr11 18673459 18673665 -130109807 + L1MA8 LINE L1 6054 6268 -23 1275 241 35 5 chr11 18673688 18674058 -130109414 - L1MC/D LINE L1 -542 5817 5437 1638 141 11 11 chr11 18674060 18674330 -130109142 - MLT1B LTR MaLR -120 270 1 2292 91 0 3 chr11 18675945 18676243 -130107229 + AluSq SINE Alu 1 297 -16 1696 113 12 0 chr11 18676245 18676485 -130106987 + AluSq SINE Alu 51 293 -20 209 196 0 0 chr11 18676684 18676730 -130106742 + T-rich Low_complexity Low_complexity 2 47 0 3000 104 97 30 chr11 18677563 18677604 -130105868 + L1PB1 LINE L1 5656 5693 -458 2214 112 3 0 chr11 18677604 18677899 -130105573 - AluSx SINE Alu -16 296 1 3000 104 97 30 chr11 18677899 18678320 -130105152 + L1PB1 LINE L1 5693 6149 -2 771 303 111 20 chr11 18678846 18679305 -130104167 - LTR33 LTR ERVL -10 511 11 319 291 122 30 chr11 18679576 18679813 -130103659 - MLT1J LTR MaLR -110 401 143 2217 108 3 3 chr11 18679895 18680192 -130103280 + AluSx SINE Alu 1 297 -15 204 239 22 22 chr11 18680479 18680525 -130102947 - L2 LINE L2 -46 3226 3181 349 300 9 0 chr11 18681108 18681218 -130102254 + MIR SINE MIR 82 192 -70 1211 134 0 16 chr11 18681549 18681715 -130101757 - AluSg/x SINE Alu -13 299 135 2055 100 21 14 chr11 18681715 18682006 -130101466 - AluSx SINE Alu -19 293 1 1211 134 0 16 chr11 18682006 18682026 -130101446 - AluSg/x SINE Alu -177 135 116 198 233 0 0 chr11 18682026 18682069 -130101403 - MER5B DNA MER1_type -133 45 3 4653 112 148 93 chr11 18682087 18683501 -130099971 - pTR5 LTR ERV1 0 2438 741 2312 73 0 70 chr11 18683608 18683936 -130099536 + AluSp SINE Alu 1 305 -8 571 293 53 0 chr11 18684386 18684574 -130098898 - MIR SINE MIR -64 198 1 2450 55 0 3 chr11 18685111 18685402 -130098070 - AluY SINE Alu -21 290 1 566 184 0 19 chr11 18685923 18686026 -130097446 - AluJ SINE Alu -13 299 199 920 168 0 7 chr11 18686027 18686176 -130097296 - AluJ SINE Alu -164 148 1 5137 149 25 20 chr11 18686889 18687892 -130095580 + L1MB2 LINE L1 5164 6171 0 1999 119 13 51 chr11 18687924 18688235 -130095237 - AluSq SINE Alu -14 299 1 2201 97 3 24 chr11 18688247 18688545 -130094927 - AluSc SINE Alu -17 292 1 201 244 115 26 chr11 18688669 18688747 -130094725 + MIR3 SINE MIR 118 202 -6 934 116 0 51 chr11 18689268 18689406 -130094066 - FLAM_C SINE Alu 0 133 3 581 311 8 79 chr11 18689454 18689695 -130093777 - L2 LINE L2 -49 3223 3000 2349 112 0 0 chr11 18689838 18690142 -130093330 - AluSx SINE Alu -8 304 1 23 0 0 0 chr11 18690164 18690187 -130093285 + AT_rich Low_complexity Low_complexity 1 23 0 696 252 73 32 chr11 18690194 18690412 -130093060 + MIR SINE MIR 23 249 -13 216 0 0 0 chr11 18690474 18690498 -130092974 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1004 184 31 5 chr11 18690797 18690993 -130092479 - MER3 DNA MER1_type 0 209 9 362 283 128 16 chr11 18691146 18691333 -130092139 + L2 LINE L2 2447 2654 -660 186 43 0 0 chr11 18691984 18692007 -130091465 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr11 18692689 18692712 -130090760 + AT_rich Low_complexity Low_complexity 1 23 0 1668 174 26 22 chr11 18693104 18693415 -130090057 + AluJb SINE Alu 1 312 0 262 261 278 0 chr11 18693646 18693761 -130089711 + L1MEd LINE L1 19 165 -5954 195 129 0 0 chr11 18693762 18693793 -130089679 + (GA)n Simple_repeat Simple_repeat 2 32 0 571 198 21 0 chr11 18693810 18693906 -130089566 + FAM SINE Alu 44 141 -44 203 346 22 52 chr11 18694932 18695068 -130088404 - L2 LINE L2 -3 3310 3179 452 207 71 57 chr11 18695326 18695466 -130088006 - MARNA DNA Mariner -222 364 223 550 136 102 0 chr11 18695487 18695575 -130087897 - FRAM SINE Alu -10 166 70 216 0 0 0 chr11 18695576 18695600 -130087872 + (TG)n Simple_repeat Simple_repeat 1 24 0 183 129 0 0 chr11 18695768 18695799 -130087673 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 150 0 83 chr11 18695824 18695884 -130087588 - AluJo SINE Alu -163 139 85 235 298 79 35 chr11 18695897 18696011 -130087461 - MARNA DNA Mariner -392 194 76 907 241 109 53 chr11 18696784 18697196 -130086276 + MLT1J2 LTR MaLR 1 435 -11 459 284 45 0 chr11 18697199 18697333 -130086139 + MIR SINE MIR 107 246 -16 1677 177 10 7 chr11 18697481 18697775 -130085697 + AluJo SINE Alu 1 295 -17 1992 136 34 0 chr11 18697778 18698073 -130085399 + AluSx SINE Alu 1 305 -7 1630 155 86 31 chr11 18699046 18699336 -130084136 - AluJo SINE Alu -6 306 1 857 88 0 9 chr11 18699875 18699988 -130083484 - AluSg/x SINE Alu -23 287 176 2074 109 44 14 chr11 18700008 18700301 -130083171 - AluY SINE Alu -9 302 1 241 223 32 75 chr11 18701249 18701343 -130082129 - MIR SINE MIR -87 121 32 1410 108 61 0 chr11 18701579 18701792 -130081680 + MER30 DNA MER1_type 5 230 0 2367 89 0 16 chr11 18704638 18704951 -130078521 + AluSq SINE Alu 1 308 -5 2049 105 11 11 chr11 18705051 18705337 -130078135 + AluSx SINE Alu 1 286 -26 30 0 0 0 chr11 18705337 18705367 -130078105 + AT_rich Low_complexity Low_complexity 1 30 0 2651 119 26 50 chr11 18706793 18707256 -130076216 + L1MA5A LINE L1 5846 6297 0 2240 84 3 53 chr11 18707365 18707685 -130075787 + AluSx SINE Alu 3 306 -6 2283 106 10 6 chr11 18708138 18708449 -130075023 + AluSx SINE Alu 1 312 0 383 333 56 47 chr11 18708668 18708881 -130074591 - MIR SINE MIR -28 234 20 269 318 0 0 chr11 18708935 18709045 -130074427 + C-rich Low_complexity Low_complexity 1 110 0 280 344 54 11 chr11 18709177 18709363 -130074109 + L2 LINE L2 1859 2052 -1262 1896 112 4 8 chr11 18710795 18711063 -130072409 + AluSx SINE Alu 34 300 -12 501 246 75 40 chr11 18711100 18711299 -130072173 - L2 LINE L2 -6 3307 3102 2226 98 17 0 chr11 18711408 18711704 -130071768 - AluSp SINE Alu -12 301 1 1195 107 51 0 chr11 18712798 18712975 -130070497 - L1MC/D LINE L1 -715 5618 5433 216 0 0 0 chr11 18712976 18713000 -130070472 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2034 102 11 14 chr11 18713003 18713288 -130070184 - AluY SINE Alu -27 284 1 274 370 79 0 chr11 18713768 18713895 -130069577 + MIR3 SINE MIR 51 187 -21 227 128 21 21 chr11 18714118 18714165 -130069307 + MIR SINE MIR 180 226 -36 234 357 105 38 chr11 18714265 18714475 -130068997 + L2 LINE L2 3030 3253 -19 208 139 0 0 chr11 18714986 18715022 -130068450 + (A)n Simple_repeat Simple_repeat 1 36 0 2097 144 0 3 chr11 18715789 18716102 -130067370 + AluJb SINE Alu 1 312 0 269 237 34 0 chr11 18716118 18716177 -130067295 + L3 LINE CR1 1514 1574 -3 881 215 0 0 chr11 18716617 18716766 -130066706 + FRAM SINE Alu 1 146 -30 1852 166 0 7 chr11 18716975 18717277 -130066195 + AluJb SINE Alu 1 300 -12 636 197 8 34 chr11 18718460 18718577 -130064895 + MER81 DNA DNA 1 114 0 2366 90 0 0 chr11 18718768 18719067 -130064405 - AluSx SINE Alu -13 299 1 1670 159 48 3 chr11 18720476 18720766 -130062706 + LTR23 LTR ERV1 2 304 -133 451 179 253 0 chr11 18720766 18720861 -130062611 + FLAM_C SINE Alu 1 119 -14 2352 95 0 0 chr11 18720890 18721184 -130062288 + AluSc SINE Alu 1 294 -15 1390 131 20 121 chr11 18721184 18721490 -130061982 + AluJo SINE Alu 1 275 -37 1028 128 0 0 chr11 18721532 18721673 -130061799 + AluSx SINE Alu 30 170 -142 232 314 29 0 chr11 18722139 18722209 -130061263 - L2 LINE L2 0 3272 3201 241 320 80 16 chr11 18722528 18722653 -130060819 + MIR SINE MIR 21 153 -109 24 0 0 0 chr11 18723122 18723146 -130060326 + AT_rich Low_complexity Low_complexity 1 24 0 2233 117 51 31 chr11 18723919 18724270 -130059202 + THE1B LTR MaLR 1 358 -6 1613 178 7 46 chr11 18724308 18724611 -130058861 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr11 18724611 18724632 -130058840 + AT_rich Low_complexity Low_complexity 1 21 0 997 92 15 0 chr11 18725182 18725313 -130058159 - AluSq/x SINE Alu -179 133 1 190 114 0 29 chr11 18725611 18725646 -130057826 + L2 LINE L2 671 704 -2610 2808 224 43 65 chr11 18725689 18726232 -130057240 - L1MD2 LINE L1 -13 6346 5793 2652 55 0 0 chr11 18726232 18726539 -130056933 - AluY SINE Alu -4 307 1 2808 224 43 65 chr11 18726539 18726662 -130056810 - L1MD2 LINE L1 -566 5793 5669 2358 118 8 30 chr11 18726662 18727034 -130056438 - THE1B LTR MaLR 0 364 1 12356 81 3 1 chr11 18727034 18728610 -130054862 - THE1B-int LTR MaLR 0 1580 1 2388 124 8 24 chr11 18728610 18728980 -130054492 - THE1B LTR MaLR 0 364 1 2808 224 43 65 chr11 18728980 18729240 -130054232 - L1MD2 LINE L1 -687 5672 5437 1389 175 34 8 chr11 18729242 18729505 -130053967 - MLT1B LTR MaLR -120 270 1 27 49 0 0 chr11 18729536 18729577 -130053895 + AT_rich Low_complexity Low_complexity 1 41 0 7326 169 13 171 chr11 18729817 18732276 -130051196 + L1M2 LINE L1 1 2847 -4002 240 35 0 0 chr11 18732276 18732305 -130051167 + (GGGAA)n Simple_repeat Simple_repeat 4 32 0 2108 76 0 0 chr11 18732305 18732569 -130050903 + AluY SINE Alu 44 307 -4 5522 198 45 27 chr11 18732590 18733556 -130049916 + L1M2 LINE L1 2931 3929 -2919 1705 158 10 24 chr11 18733556 18733848 -130049624 + AluJb SINE Alu 3 290 -22 5522 198 45 27 chr11 18733848 18734246 -130049226 + L1M2 LINE L1 3929 4319 -2529 1917 222 77 10 chr11 18734241 18734319 -130049153 + L1M1 LINE L1 15 86 -7479 * 204 40 0 0 chr11 18734319 18734344 -130049128 + (CA)n Simple_repeat Simple_repeat 2 26 0 1917 222 77 10 chr11 18734344 18734747 -130048725 + L1M1 LINE L1 86 528 -7037 2432 148 35 33 chr11 18734747 18735259 -130048213 + MLT2A2 LTR ERVL 1 510 -5 232 253 32 63 chr11 18735622 18735717 -130047755 - MIR3 SINE MIR -14 194 103 24 32 0 0 chr11 18738895 18738926 -130044546 + AT_rich Low_complexity Low_complexity 1 31 0 2491 74 0 0 chr11 18738926 18739225 -130044247 + AluY SINE Alu 1 299 -12 2178 120 13 3 chr11 18739482 18739782 -130043690 + AluSx SINE Alu 1 303 -9 18253 164 16 22 chr11 18741129 18743008 -130040464 + L1M1 LINE L1 524 2413 -5152 1524 183 95 0 chr11 18743008 18743271 -130040201 + AluSx SINE Alu 1 288 -24 18253 164 16 22 chr11 18743271 18743558 -130039914 + L1M1 LINE L1 2413 2700 -4865 1111 209 153 4 chr11 18743558 18743807 -130039665 + AluJb SINE Alu 3 288 -14 18253 164 16 22 chr11 18743807 18744422 -130039050 + L1M1 LINE L1 2700 3317 -4248 185 0 40 0 chr11 18744422 18744447 -130039025 + (TTG)n Simple_repeat Simple_repeat 2 27 0 18253 164 16 22 chr11 18744447 18746845 -130036627 + L1M1 LINE L1 3317 5671 -1894 7332 198 111 18 chr11 18746845 18748425 -130035047 - MER52A LTR ERV1 -29 1726 1 231 307 109 15 chr11 18748427 18748564 -130034908 - L1P3 LINE L1 -523 5649 5500 246 62 0 0 chr11 18748714 18748746 -130034726 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1777 124 37 44 chr11 18748779 18749077 -130034395 + AluJb SINE Alu 3 298 -14 508 118 59 6 chr11 18749388 18749557 -130033915 + (TG)n Simple_repeat Simple_repeat 2 179 0 659 95 63 0 chr11 18749582 18749740 -130033732 + (TG)n Simple_repeat Simple_repeat 2 169 0 234 150 0 0 chr11 18749798 18749838 -130033634 + (GA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr11 18749840 18749876 -130033596 + AT_rich Low_complexity Low_complexity 1 36 0 284 260 91 87 chr11 18750010 18750264 -130033208 - L1ME4a LINE L1 -25 6096 5842 471 285 8 0 chr11 18750447 18750577 -130032895 + L2 LINE L2 3183 3313 0 3799 190 4 31 chr11 18751314 18751501 -130031971 - L1P3 LINE L1 -973 5173 4982 1865 147 45 3 chr11 18751501 18751793 -130031679 - AluSx SINE Alu -8 304 1 3799 190 4 31 chr11 18751793 18752411 -130031061 - L1P3 LINE L1 -1164 4982 4390 * 5483 111 71 19 chr11 18752403 18752692 -130030780 + L1PA16 LINE L1 5179 5451 -715 1837 183 0 16 chr11 18752692 18753009 -130030463 + AluJo SINE Alu 1 312 0 5483 111 71 19 chr11 18753009 18753653 -130029819 + L1PA16 LINE L1 5451 6156 -10 2123 93 4 4 chr11 18754522 18754840 -130028632 + AluSc SINE Alu 1 318 0 1386 308 88 31 chr11 18754841 18755717 -130027755 - L2 LINE L2 -673 2641 1716 243 288 68 0 chr11 18755750 18755823 -130027649 - L2 LINE L2 -27 3245 3168 294 293 9 52 chr11 18755943 18756059 -130027413 + MIR SINE MIR 25 135 -127 1710 140 80 0 chr11 18756317 18756603 -130026869 + AluSx SINE Alu 1 309 -3 2163 132 3 0 chr11 18756709 18757019 -130026453 + AluSx SINE Alu 1 311 -1 1857 172 3 3 chr11 18757092 18757382 -130026090 - AluJo SINE Alu -22 290 1 236 206 95 16 chr11 18757880 18757943 -130025529 - L2 LINE L2 -4 3268 3201 1946 144 7 7 chr11 18758404 18758709 -130024763 - AluJo SINE Alu -7 305 1 237 330 0 10 chr11 18759784 18759887 -130023585 + MIR SINE MIR 120 221 -41 2372 226 45 44 chr11 18759939 18760049 -130023423 + L1ME3 LINE L1 5434 5542 -620 1765 171 0 13 chr11 18760049 18760354 -130023118 - AluJo SINE Alu -11 301 1 2372 226 45 44 chr11 18760354 18760969 -130022503 + L1ME3 LINE L1 5542 6160 -2 295 321 48 37 chr11 18761378 18761565 -130021907 - MER5A DNA MER1_type 0 189 1 303 66 16 49 chr11 18762356 18762417 -130021055 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 1411 182 72 45 chr11 18762422 18762713 -130020759 - AluJo SINE Alu -8 304 6 1521 257 53 42 chr11 18763714 18764008 -130019464 - L1MC4a LINE L1 -1903 5905 5616 2054 147 0 0 chr11 18764008 18764308 -130019164 - AluSx SINE Alu -12 300 1 1521 257 53 42 chr11 18764308 18764652 -130018820 - L1MC4a LINE L1 -2192 5616 5260 3368 65 11 23 chr11 18764870 18765343 -130018129 - L1MA2 LINE L1 0 6304 5838 270 298 69 53 chr11 18765504 18765692 -130017780 - L1MC4a LINE L1 -1209 4937 4747 535 285 141 9 chr11 18765847 18766187 -130017285 + L2 LINE L2 1820 2204 -1110 1301 249 59 23 chr11 18766266 18766749 -130016723 - LTR48B LTR ERV1 0 644 115 372 288 108 0 chr11 18766721 18766832 -130016640 - MER34 LTR ERV1 -419 123 1 * 5289 146 23 37 chr11 18766862 18768266 -130015206 + L1PB4 LINE L1 4770 6152 -4 1713 195 141 37 chr11 18768447 18768909 -130014563 - MLT2B1 LTR ERVL -2 518 9 1911 171 0 3 chr11 18768919 18769223 -130014249 + AluJb SINE Alu 1 303 -9 698 254 16 5 chr11 18770171 18770356 -130013116 + LTR41 LTR ERVL 1 187 -586 250 290 7 0 chr11 18770545 18770615 -130012857 - MLT1C LTR MaLR -301 73 1 405 162 29 48 chr11 18770872 18770977 -130012495 + LTR41 LTR ERVL 665 767 -6 2034 130 3 3 chr11 18772882 18773174 -130010298 - AluSx SINE Alu -7 305 14 443 253 110 14 chr11 18773174 18773320 -130010152 + MER5B DNA MER1_type 16 175 -3 342 278 105 37 chr11 18773359 18773521 -130009951 + MIR SINE MIR 20 192 -70 733 154 8 0 chr11 18774740 18774857 -130008615 - 5S rRNA rRNA 0 121 4 1451 211 0 10 chr11 18775455 18775754 -130007718 + AluJo SINE Alu 7 302 -10 237 108 0 0 chr11 18776011 18776048 -130007424 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 793 197 8 8 chr11 18776060 18776319 -130007153 + CT-rich Low_complexity Low_complexity 1 259 0 751 96 32 0 chr11 18776440 18776565 -130006907 + C-rich Low_complexity Low_complexity 4 132 0 1436 208 11 4 chr11 18776566 18776845 -130006627 - AluJb SINE Alu -31 281 1 1033 266 77 27 chr11 18776846 18777211 -130006261 - L2 LINE L2 -1880 1434 1052 255 316 9 61 chr11 18777518 18777632 -130005840 + L2 LINE L2 3165 3272 0 1103 301 79 7 chr11 18779435 18779853 -130003619 + L2 LINE L2 2530 2977 -337 315 313 40 13 chr11 18779899 18780049 -130003423 - L2 LINE L2 -2592 722 569 1805 149 10 3 chr11 18780112 18780408 -130003064 + AluJo SINE Alu 1 298 -14 205 241 336 26 chr11 18781486 18781602 -130001870 - MIR3 SINE MIR -54 154 3 21 0 0 0 chr11 18782523 18782544 -130000928 + AT_rich Low_complexity Low_complexity 1 21 0 2529 45 0 3 chr11 18782715 18783026 -130000446 - AluY SINE Alu -1 310 1 1828 91 4 4 chr11 18783439 18783692 -129999780 + AluSq SINE Alu 50 302 -11 601 209 0 8 chr11 18784744 18784878 -129998594 - AluY SINE Alu -13 298 166 583 148 0 30 chr11 18784999 18785110 -129998362 - MER5A DNA MER1_type -79 110 4 343 322 40 7 chr11 18786506 18786655 -129996817 + LTR16C LTR ERVL 336 489 -2 604 159 28 19 chr11 18787028 18787135 -129996337 + ERVL LTR ERVL 4510 4617 -1147 265 311 14 0 chr11 18787180 18787254 -129996218 + MIR SINE MIR 25 99 -163 35 24 0 0 chr11 18787905 18787947 -129995525 + AT_rich Low_complexity Low_complexity 1 42 0 2327 75 3 3 chr11 18789839 18790145 -129993327 - AluSg SINE Alu 0 310 5 411 221 93 76 chr11 18790286 18790311 -129993161 + MER5B DNA MER1_type 1 24 -154 1855 129 3 3 chr11 18790311 18790598 -129992874 - AluSx SINE Alu -12 300 14 411 221 93 76 chr11 18790598 18790744 -129992728 + MER5B DNA MER1_type 24 175 -3 241 237 61 53 chr11 18790783 18790897 -129992575 + MIR SINE MIR 20 134 -128 733 154 8 0 chr11 18792187 18792304 -129991168 - 5S rRNA rRNA 0 121 4 683 202 25 0 chr11 18793459 18793578 -129989894 + FLAM_A SINE Alu 1 122 -11 448 318 11 6 chr11 18793915 18794094 -129989378 + L1M4 LINE L1 3773 3952 -2194 489 271 53 0 chr11 18794162 18794295 -129989177 + Charlie1 DNA MER1_type 1 140 -2621 * 2296 195 55 2 chr11 18794292 18794819 -129988653 + Charlie1 DNA MER1_type 2207 2761 0 1803 156 0 3 chr11 18794895 18795190 -129988282 + AluSx SINE Alu 4 297 -15 413 263 58 49 chr11 18795191 18795441 -129988031 + L1M4 LINE L1 4081 4339 -1807 237 194 14 28 chr11 18795593 18795665 -129987807 + L1M4 LINE L1 4549 4619 -1527 800 172 0 6 chr11 18795682 18795862 -129987610 + CT-rich Low_complexity Low_complexity 1 179 0 1269 207 3 24 chr11 18795862 18796181 -129987291 - AluJb SINE Alu 0 313 1 2120 113 3 0 chr11 18796229 18796529 -129986943 + AluSp SINE Alu 1 301 -12 243 173 0 0 chr11 18796583 18796635 -129986837 + (TA)n Simple_repeat Simple_repeat 2 53 0 2254 78 3 0 chr11 18796636 18796931 -129986541 - AluSq SINE Alu -17 296 1 4704 151 96 21 chr11 18796931 18797779 -129985693 + MER21A LTR ERV1 15 925 -6 2673 202 31 4 chr11 18798566 18799105 -129984367 + MER74A LTR ERVL 1 554 -4 1849 146 0 7 chr11 18799119 18799400 -129984072 - AluJo SINE Alu -31 281 3 375 292 22 0 chr11 18799484 18799573 -129983899 + L1MC4 LINE L1 6614 6704 -1338 885 189 0 6 chr11 18799581 18799750 -129983722 + AluJb SINE Alu 143 310 -2 649 140 0 10 chr11 18800011 18800111 -129983361 + AluY SINE Alu 2 100 -211 1440 215 102 48 chr11 18800555 18800997 -129982475 - MER31B LTR ERV1 0 466 1 261 312 64 6 chr11 18801882 18802039 -129981433 - L1ME LINE L1 -230 5891 5726 1665 154 4 0 chr11 18802842 18803101 -129980371 - AluSx SINE Alu -52 260 1 350 188 23 62 chr11 18803126 18803254 -129980218 - L1MC5 LINE L1 -476 7485 7363 1890 108 4 0 chr11 18803965 18804224 -129979248 - AluSx SINE Alu -52 260 1 1841 101 0 0 chr11 18804329 18804576 -129978896 - AluSx SINE Alu -65 247 1 212 0 36 0 chr11 18804717 18804745 -129978727 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 333 47 0 0 chr11 18804801 18804844 -129978628 + (TG)n Simple_repeat Simple_repeat 2 44 0 211 328 45 0 chr11 18805038 18805105 -129978367 + L2 LINE L2 2985 3054 -218 193 268 152 9 chr11 18805199 18805311 -129978161 + L2 LINE L2 3167 3294 -19 342 145 0 16 chr11 18805622 18805684 -129977788 + FLAM SINE Alu 71 131 -2 189 0 0 0 chr11 18806046 18806067 -129977405 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 811 172 6 50 chr11 18806073 18806253 -129977219 - AluJo SINE Alu -23 289 118 586 194 0 0 chr11 18807000 18807098 -129976374 - FLAM_A SINE Alu -33 109 12 2563 33 0 3 chr11 18807118 18807425 -129976047 + AluY SINE Alu 1 306 -5 225 335 38 16 chr11 18808762 18808947 -129974525 - L1 LINE L1 -1076 5070 4882 257 221 91 13 chr11 18808997 18809074 -129974398 + L1M1 LINE L1 5380 5462 -843 255 210 80 50 chr11 18809074 18809174 -129974298 - L1 LINE L1 -1321 4825 4723 27 29 0 0 chr11 18809630 18809664 -129973808 + AT_rich Low_complexity Low_complexity 1 34 0 827 193 60 0 chr11 18809832 18809982 -129973490 - AluJb SINE Alu -17 295 137 685 259 47 42 chr11 18810017 18810229 -129973243 - MIR SINE MIR -38 224 12 482 211 165 9 chr11 18812080 18812189 -129971283 - L2 LINE L2 0 3313 3188 425 317 150 33 chr11 18812586 18812886 -129970586 - L2 LINE L2 -1198 2116 1782 360 311 185 26 chr11 18812910 18813251 -129970221 - L2 LINE L2 0 3313 2919 2370 43 0 0 chr11 18813378 18813658 -129969814 + LTR5 LTR ERVK 1 280 -689 217 240 192 27 chr11 18814357 18814503 -129968969 + L2 LINE L2 2328 2497 -817 635 165 0 0 chr11 18815001 18815092 -129968380 - AluS SINE Alu -220 92 2 184 240 0 130 chr11 18815377 18815477 -129967995 + MIR SINE MIR 121 207 -55 206 222 111 0 chr11 18815827 18815881 -129967591 + L2 LINE L2 3244 3303 -10 22 0 0 0 chr11 18816325 18816347 -129967125 + AT_rich Low_complexity Low_complexity 1 22 0 248 182 80 147 chr11 18816400 18816625 -129966847 + L1ME4a LINE L1 5812 6021 -100 503 283 36 14 chr11 18817165 18817459 -129966013 + L1MC5 LINE L1 7230 7415 -393 32 0 0 0 chr11 18817515 18817547 -129965925 + AT_rich Low_complexity Low_complexity 1 32 0 286 204 83 46 chr11 18817657 18817765 -129965707 + L1MC4 LINE L1 7911 8022 -20 805 154 23 8 chr11 18818276 18818406 -129965066 - AluJb SINE Alu -179 133 2 2031 126 0 7 chr11 18819783 18820093 -129963379 - AluSx SINE Alu -4 308 1 667 224 20 27 chr11 18820186 18820333 -129963139 - MER45A DNA AcHobo -23 155 10 180 0 0 0 chr11 18822221 18822241 -129961231 + (TG)n Simple_repeat Simple_repeat 2 21 0 670 223 60 49 chr11 18822253 18822437 -129961035 + MER20 DNA MER1_type 4 189 -30 2283 79 3 0 chr11 18822853 18823143 -129960329 - AluSp SINE Alu -21 292 2 1604 162 7 32 chr11 18823173 18823481 -129959991 + AluJb SINE Alu 1 300 -12 3111 116 27 5 chr11 18823824 18824262 -129959210 + MER83 LTR ERV1 1 448 0 556 301 6 0 chr11 18824369 18824545 -129958927 - L1ME2 LINE L1 0 6164 5988 339 282 155 35 chr11 18824718 18824892 -129958580 - MIR SINE MIR -34 228 34 1325 176 57 0 chr11 18825054 18825298 -129958174 + MER58B DNA MER1_type 56 313 -28 200 299 0 0 chr11 18825316 18825383 -129958089 + MER5A DNA MER1_type 4 70 -119 180 371 52 0 chr11 18826584 18826681 -129956791 - MER5A DNA MER1_type -81 108 7 1662 81 0 0 chr11 18827811 18828022 -129955450 - AluSq SINE Alu -15 298 88 1550 108 10 0 chr11 18828511 18828715 -129954757 - AluSq SINE Alu -106 207 2 6232 116 7 60 chr11 18828716 18830712 -129952760 - L1P3 LINE L1 -665 5489 3830 290 153 17 0 chr11 18831700 18831759 -129951713 + (CA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr11 18832750 18832790 -129950682 + AT_rich Low_complexity Low_complexity 1 40 0 1994 109 3 40 chr11 18832790 18833093 -129950379 - AluSx SINE Alu -20 292 1 358 279 96 29 chr11 18834056 18834264 -129949208 - L1ME4a LINE L1 -102 6019 5798 2183 107 0 10 chr11 18834370 18834684 -129948788 - AluSx SINE Alu 0 312 1 282 335 187 62 chr11 18834986 18835048 -129948424 - L2 LINE L2 -25 3247 3194 1922 139 24 14 chr11 18835048 18835343 -129948129 - AluSx SINE Alu -10 302 5 282 335 187 62 chr11 18835343 18835537 -129947935 - L2 LINE L2 -78 3194 2959 218 196 59 0 chr11 18835962 18836013 -129947459 + L2 LINE L2 3256 3309 -4 31 26 0 0 chr11 18836509 18836547 -129946925 + AT_rich Low_complexity Low_complexity 1 38 0 878 231 6 33 chr11 18836561 18836743 -129946729 + AluJo SINE Alu 2 178 -134 413 181 39 71 chr11 18837509 18837755 -129945717 + MER2 DNA MER2_type 66 345 0 1646 161 9 63 chr11 18837824 18838140 -129945332 - AluSx SINE Alu -13 299 1 2117 126 14 0 chr11 18838236 18838529 -129944943 + AluSx SINE Alu 1 297 -15 2248 67 21 3 chr11 18838967 18839250 -129944222 - AluY SINE Alu -23 288 1 971 147 0 0 chr11 18839252 18839388 -129944084 - AluSq/x SINE Alu -177 136 1 248 328 0 0 chr11 18839493 18839557 -129943915 + L1ME4a LINE L1 5549 5612 -2196 719 186 0 57 chr11 18839559 18839699 -129943773 + FLAM_C SINE Alu 2 133 -10 480 243 32 72 chr11 18839768 18840006 -129943466 + L1ME4a LINE L1 5699 5929 -192 343 253 8 13 chr11 18840756 18840845 -129942627 + MIR SINE MIR 11 103 -105 235 191 38 95 chr11 18841182 18841287 -129942185 - L1MC5 LINE L1 -34 7927 7829 1183 313 108 24 chr11 18841397 18842036 -129941436 + L3 LINE CR1 878 1570 -7 1040 96 0 15 chr11 18893137 18893272 -129890200 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr11 18893352 18893381 -129890091 + AT_rich Low_complexity Low_complexity 1 29 0 258 32 0 0 chr11 18894885 18894916 -129888556 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1621 181 18 7 chr11 18894917 18895193 -129888279 - AluJo SINE Alu -33 279 1 748 263 92 24 chr11 18895213 18895548 -129887924 - L1M4 LINE L1 -1984 4162 3805 2371 98 3 0 chr11 18895564 18895869 -129887603 - AluSg SINE Alu -2 308 3 2266 100 7 7 chr11 18895881 18896181 -129887291 - AluSc SINE Alu -9 300 1 22 0 0 0 chr11 18896191 18896213 -129887259 + AT_rich Low_complexity Low_complexity 1 22 0 668 168 37 0 chr11 18896214 18896321 -129887151 + FLAM_C SINE Alu 2 112 -31 2290 91 3 13 chr11 18896470 18896777 -129886695 + AluSg SINE Alu 1 304 -6 1501 164 31 72 chr11 18896780 18897098 -129886374 + AluJb SINE Alu 1 305 -7 2135 99 0 63 chr11 18897117 18897258 -129886214 + AluSx SINE Alu 1 149 -163 2491 46 0 0 chr11 18897258 18897577 -129885895 + AluY SINE Alu 1 319 0 2135 99 0 63 chr11 18897577 18897766 -129885706 + AluSx SINE Alu 149 311 -1 2800 103 78 5 chr11 18898017 18898416 -129885056 + MSTC LTR MaLR 1 428 0 238 325 111 26 chr11 18898417 18898534 -129884938 - L2 LINE L2 -3 3269 3143 214 235 160 50 chr11 18898567 18898686 -129884786 - L3 LINE CR1 -108 1469 1338 307 284 300 21 chr11 18899218 18899335 -129884137 - MIR SINE MIR -17 245 162 2377 104 0 0 chr11 18899335 18899633 -129883839 + AluSp SINE Alu 1 298 -15 307 284 300 21 chr11 18899633 18899705 -129883767 - MIR SINE MIR -100 162 3 531 217 9 35 chr11 18899868 18900029 -129883443 - FLAM_A SINE Alu 0 161 4 1754 148 36 0 chr11 18900040 18900318 -129883154 - AluSx SINE Alu -18 294 7 32 0 0 0 chr11 18900328 18900360 -129883112 + AT_rich Low_complexity Low_complexity 1 32 0 2322 107 37 11 chr11 18900718 18901073 -129882399 - L1PA16 LINE L1 -1 6165 5802 1960 146 7 3 chr11 18901272 18901573 -129881899 + AluJb SINE Alu 1 302 -10 492 271 59 52 chr11 18901738 18902026 -129881446 - L2 LINE L2 -759 2555 2266 501 111 53 213 chr11 18902401 18902478 -129880994 - L1M4 LINE L1 -1383 4763 4675 2147 112 11 0 chr11 18902478 18902765 -129880707 + AluSx SINE Alu 1 290 -22 501 111 53 213 chr11 18902765 18902783 -129880689 - L1M4 LINE L1 -1471 4675 4656 1116 133 0 0 chr11 18902783 18902963 -129880509 + (TA)n Simple_repeat Simple_repeat 1 180 0 501 111 53 213 chr11 18902963 18903073 -129880399 - L1M4 LINE L1 -1490 4656 4590 * 887 235 76 41 chr11 18903053 18903237 -129880235 - L1M4c LINE L1 -4832 1552 1349 2204 118 0 3 chr11 18903237 18903541 -129879931 - AluSx SINE Alu -9 303 1 887 235 76 41 chr11 18903541 18903697 -129879775 - L1M4c LINE L1 -5035 1349 1200 207 0 0 0 chr11 18904733 18904756 -129878716 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2107 118 14 0 chr11 18904832 18905119 -129878353 - AluSx SINE Alu -14 298 8 2356 95 0 0 chr11 18905592 18905888 -129877584 - AluSx SINE Alu -16 296 1 1476 141 0 0 chr11 18906112 18906325 -129877147 - AluSg/x SINE Alu -13 297 85 2122 96 48 21 chr11 18906325 18906660 -129876812 - L1PBa LINE L1 -4336 2527 2184 474 139 0 0 chr11 18906760 18906832 -129876640 + AluSp/q SINE Alu 227 298 -15 643 111 89 0 chr11 18906835 18906925 -129876547 - FLAM_A SINE Alu -26 116 19 2012 139 7 3 chr11 18906987 18907281 -129876191 + AluSx SINE Alu 3 297 -15 2079 119 10 3 chr11 18907417 18907712 -129875760 + AluSx SINE Alu 1 297 -15 1667 161 65 0 chr11 18907851 18908142 -129875330 + AluJb SINE Alu 1 310 -2 1341 116 0 6 chr11 18908186 18908367 -129875105 + AluSx SINE Alu 1 180 -132 426 194 111 21 chr11 18908372 18908516 -129874956 + L1ME3A LINE L1 4496 4652 -1494 1155 269 129 26 chr11 18908681 18909246 -129874226 + L1ME3A LINE L1 4960 5648 -522 2429 74 3 0 chr11 18909246 18909542 -129873930 + AluSg SINE Alu 1 297 -13 1155 269 129 26 chr11 18909542 18909843 -129873629 + L1ME3A LINE L1 5648 5917 -253 2037 99 0 0 chr11 18909870 18910132 -129873340 + AluSx SINE Alu 2 263 -49 2242 94 10 3 chr11 18910273 18910570 -129872902 + AluSx SINE Alu 1 299 -13 1492 174 0 4 chr11 18911390 18911626 -129871846 + AluJo SINE Alu 1 235 -77 2234 122 3 0 chr11 18911680 18911991 -129871481 + AluSx SINE Alu 1 312 0 3408 231 81 43 chr11 18912002 18912300 -129871172 - L2 LINE L2 -36 3277 2992 1639 154 18 28 chr11 18912300 18912586 -129870886 + AluJo SINE Alu 14 296 -16 3408 231 81 43 chr11 18912586 18913504 -129869968 - L2 LINE L2 -321 2992 2110 1688 178 13 16 chr11 18913504 18913813 -129869659 + AluJb SINE Alu 1 308 -4 1935 174 13 0 chr11 18913819 18914124 -129869348 + AluJb SINE Alu 1 309 -3 3408 231 81 43 chr11 18914124 18914299 -129869173 - L2 LINE L2 -1207 2106 1829 248 250 46 56 chr11 18914306 18914414 -129869058 + L1MC5 LINE L1 7200 7306 -655 1614 94 9 0 chr11 18914435 18914648 -129868824 - AluSg/x SINE Alu -12 298 84 2427 77 0 7 chr11 18914758 18915068 -129868404 + AluY SINE Alu 4 311 0 599 200 0 18 chr11 18915159 18915269 -129868203 - FAM SINE Alu -67 118 11 2302 103 0 0 chr11 18915342 18915642 -129867830 + AluSx SINE Alu 1 300 -12 208 258 101 34 chr11 18916065 18916154 -129867318 - MIR SINE MIR -2 260 166 2043 126 0 0 chr11 18916173 18916458 -129867014 + AluSg1 SINE Alu 1 285 -24 730 254 106 30 chr11 18916592 18916891 -129866581 + L1MEd LINE L1 623 898 -5412 1923 144 3 7 chr11 18916891 18917200 -129866272 + AluSx SINE Alu 1 308 0 730 254 106 30 chr11 18917200 18917647 -129865825 + L1MEd LINE L1 898 1555 -4755 459 153 153 0 chr11 18917662 18917747 -129865725 + FLAM_A SINE Alu 43 140 -2 257 291 73 45 chr11 18917755 18917934 -129865538 + L1MEd LINE L1 1555 1738 -4572 2071 122 3 25 chr11 18918117 18918436 -129865036 - AluSx SINE Alu 0 312 1 1079 86 0 0 chr11 18918550 18918689 -129864783 - AluSp SINE Alu -174 139 1 2128 123 0 7 chr11 18918690 18918991 -129864481 - AluSq SINE Alu -10 303 5 229 324 0 0 chr11 18919030 18919104 -129864368 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 1750 179 0 16 chr11 18919313 18919442 -129864030 + AluJo SINE Alu 9 139 -173 2368 75 10 0 chr11 18919442 18919735 -129863737 + AluY SINE Alu 1 296 -15 1750 179 0 16 chr11 18919735 18919912 -129863560 + AluJo SINE Alu 139 310 -2 1661 189 3 7 chr11 18919962 18920258 -129863214 + AluJo SINE Alu 1 295 -17 202 241 0 52 chr11 18920315 18920373 -129863099 - L2 LINE L2 0 3272 3218 308 221 127 44 chr11 18920948 18921106 -129862366 - Charlie7 DNA MER1_type 0 2612 2442 1862 162 7 0 chr11 18921107 18921404 -129862068 + AluJb SINE Alu 1 299 -13 2100 88 0 0 chr11 18921529 18921789 -129861683 - AluSc SINE Alu -49 260 1 581 269 0 29 chr11 18922340 18922359 -129861113 - L1MA10 LINE L1 0 6334 6316 1175 266 51 61 chr11 18922359 18922732 -129860740 - L1ME1 LINE L1 -5 6161 5795 1320 192 3 84 chr11 18922732 18923040 -129860432 - AluSx SINE Alu -29 283 1 1175 266 51 61 chr11 18923040 18923259 -129860213 - L1ME1 LINE L1 -371 5795 5575 751 163 7 20 chr11 18923260 18923530 -129859942 + AluJ SINE Alu 1 312 0 2158 121 3 16 chr11 18923554 18923859 -129859613 + AluSq SINE Alu 1 301 -12 1883 119 14 21 chr11 18924004 18924321 -129859151 - AluSx SINE Alu 0 315 1 7026 167 33 17 chr11 18924323 18925575 -129857897 - L1PBa LINE L1 -2879 3983 2660 2375 107 0 0 chr11 18925575 18925884 -129857588 + AluSx SINE Alu 1 309 -3 7026 167 33 17 chr11 18925884 18926897 -129856575 - L1PBa LINE L1 -4202 2660 1665 1120 144 11 16 chr11 18926897 18927084 -129856388 - AluSx SINE Alu -126 186 1 231 276 49 25 chr11 18927397 18927560 -129855912 - L1ME LINE L1 -3733 2649 2483 984 181 109 23 chr11 18927656 18927688 -129855784 - L1MB7 LINE L1 0 6184 6156 2637 131 46 10 chr11 18927688 18928101 -129855371 + MSTA LTR MaLR 1 428 0 984 181 109 23 chr11 18928101 18928334 -129855138 - L1MB7 LINE L1 -28 6156 5896 1607 164 7 3 chr11 18928953 18929257 -129854215 - AluSp SINE Alu -8 305 1 305 268 68 113 chr11 18929641 18929996 -129853476 - L1ME LINE L1 -5063 1309 971 2398 76 3 0 chr11 18930002 18930306 -129853166 - AluSp SINE Alu -8 305 1 311 316 32 0 chr11 18930587 18930682 -129852790 - L1M4 LINE L1 -4703 1681 1584 389 278 19 108 chr11 18930751 18930946 -129852526 - L1M4 LINE L1 -1008 5138 4927 2165 153 67 48 chr11 18930946 18930991 -129852481 - MSTB LTR MaLR 0 426 383 2460 65 0 0 chr11 18930991 18931298 -129852174 + AluY SINE Alu 1 307 -4 1698 157 49 0 chr11 18931303 18931590 -129851882 + AluSx SINE Alu 1 301 -11 2165 153 67 48 chr11 18931590 18931956 -129851516 - MSTB LTR MaLR -46 380 1 389 278 19 108 chr11 18931956 18931972 -129851500 - L1M4 LINE L1 -1218 4928 4946 801 275 21 21 chr11 18932389 18932625 -129850847 + MIR SINE MIR 8 243 -19 2258 98 0 0 chr11 18932801 18933108 -129850364 + AluSq SINE Alu 1 307 -6 1813 137 3 56 chr11 18933213 18933535 -129849937 + AluSx SINE Alu 1 305 -7 2002 115 3 47 chr11 18933540 18933862 -129849610 + AluSc SINE Alu 1 308 -1 21 36 0 0 chr11 18933966 18933994 -129849478 + AT_rich Low_complexity Low_complexity 1 28 0 656 163 81 0 chr11 18934022 18934145 -129849327 + L1MB3 LINE L1 6020 6152 -31 1483 180 12 43 chr11 18934167 18934489 -129848983 + AluJo SINE Alu 1 312 0 831 239 6 6 chr11 18934492 18934668 -129848804 + AluJo/FRAM SINE Alu 129 304 -8 1896 117 0 0 chr11 18935401 18935667 -129847805 - AluSx SINE Alu -10 302 37 1902 164 0 0 chr11 18936188 18936498 -129846974 - AluSx SINE Alu 0 312 3 405 0 0 0 chr11 18937345 18937390 -129846082 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr11 18937608 18937630 -129845842 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 18937740 18937761 -129845711 + AT_rich Low_complexity Low_complexity 1 21 0 1940 125 0 33 chr11 18937933 18938237 -129845235 - AluSg SINE Alu -16 294 1 1590 186 0 19 chr11 18938429 18938746 -129844726 + AluJb SINE Alu 1 311 -1 472 250 0 0 chr11 18939100 18939204 -129844268 - L2 LINE L2 -2 3311 3208 194 338 68 23 chr11 18939172 18939305 -129844167 - L2 LINE L2 -845 2469 2331 * 807 217 97 23 chr11 18939326 18939543 -129843929 - MLT1K LTR MaLR -37 551 319 1993 100 10 20 chr11 18939875 18940176 -129843296 - AluY SINE Alu -13 298 1 1219 134 56 22 chr11 18940821 18941052 -129842420 + AluJo SINE Alu 74 312 0 22 0 0 0 chr11 18941667 18941689 -129841783 + AT_rich Low_complexity Low_complexity 1 22 0 309 133 0 0 chr11 18943166 18943211 -129840261 + Alu SINE Alu 246 290 -12 1296 194 57 0 chr11 18943261 18943540 -129839932 + AluJo SINE Alu 1 295 -17 2165 114 0 0 chr11 18943841 18944139 -129839333 - AluSx SINE Alu -14 298 1 1729 147 10 20 chr11 18944333 18944633 -129838839 - AluJb SINE Alu -15 297 1 347 159 18 159 chr11 18945057 18945170 -129838302 + MER106B DNA MER1_type 27 123 -936 315 0 0 0 chr11 18945200 18945235 -129838237 + (TA)n Simple_repeat Simple_repeat 1 35 0 1214 119 0 0 chr11 18945243 18945420 -129838052 - AluSg/x SINE Alu -4 306 130 1782 102 74 0 chr11 18945422 18945707 -129837765 - AluSx SINE Alu -6 306 1 397 209 11 33 chr11 18945722 18945813 -129837659 + MER106B DNA MER1_type 971 1059 0 3313 98 2 15 chr11 18945841 18946298 -129837174 - MLT2A2 LTR ERVL 0 453 3 2085 75 0 0 chr11 18946398 18946664 -129836808 - AluSx SINE Alu -12 300 35 2058 120 0 7 chr11 18946799 18947098 -129836374 - AluSx SINE Alu -15 297 1 488 180 60 20 chr11 18949317 18949417 -129834055 - FLAM_C SINE Alu -29 114 11 335 90 149 0 chr11 18950577 18950644 -129832828 - L1MC2 LINE L1 -14 6330 6254 2217 152 53 29 chr11 18950663 18951203 -129832269 + MLT2A2 LTR ERVL 1 554 0 2266 168 24 14 chr11 18951210 18951634 -129831838 - L1MC3 LINE L1 -115 7670 7243 1469 164 3 75 chr11 18951754 18951903 -129831569 + AluJo SINE Alu 9 124 -188 2299 79 0 7 chr11 18951903 18952206 -129831266 + AluSq SINE Alu 1 301 -12 1469 164 3 75 chr11 18952206 18952374 -129831098 + AluJo SINE Alu 124 303 -9 322 265 122 10 chr11 18952707 18952819 -129830653 + MIR SINE MIR 30 154 -54 861 110 0 22 chr11 18952917 18953053 -129830419 - MER41B LTR ERV1 0 635 503 1828 147 0 3 chr11 18953058 18953351 -129830121 + AluSx SINE Alu 18 309 -3 3200 144 7 35 chr11 18953353 18953377 -129830095 - MER41B LTR ERV1 -87 548 525 2227 85 7 3 chr11 18953377 18953682 -129829790 + AluSc SINE Alu 3 308 -1 3200 144 7 35 chr11 18953682 18954204 -129829268 - MER41B LTR ERV1 -110 525 17 2266 115 0 0 chr11 18954208 18954521 -129828951 - AluSq SINE Alu 0 313 1 1240 189 18 14 chr11 18954522 18954549 -129828923 - HERVK14 LTR ERVK -157 5788 5761 3388 90 17 21 chr11 18954549 18955025 -129828447 - MER41-int LTR ERV1 0 5946 5473 1837 107 0 4 chr11 18955026 18955288 -129828184 - AluSg SINE Alu -4 306 46 1824 98 4 8 chr11 18955467 18955721 -129827751 - LTR8A LTR ERV1 -474 253 1 251 253 77 22 chr11 18955726 18955817 -129827655 - L2 LINE L2 -56 3257 3162 398 219 104 15 chr11 18956805 18956932 -129826540 - MIR SINE MIR -66 142 33 2071 121 0 0 chr11 18959850 18960148 -129823324 + AluSx SINE Alu 13 310 -2 1552 219 162 29 chr11 18961089 18961577 -129821895 - MLT1H1 LTR MaLR 0 555 3 760 307 187 10 chr11 18961791 18962373 -129821099 - MER115 DNA AcHobo 0 693 1 544 99 44 0 chr11 18962767 18962858 -129820614 - AluSg/x SINE Alu -1 309 215 259 114 0 0 chr11 18962858 18962902 -129820570 + Alu SINE Alu 257 300 -1 2282 83 17 0 chr11 18963174 18963475 -129819997 - AluSg SINE Alu -4 306 1 1746 225 37 83 chr11 18963743 18964311 -129819161 - MLT1F LTR MaLR 0 542 1 2130 108 0 0 chr11 18965553 18965840 -129817632 + AluSx SINE Alu 1 287 -25 286 293 86 26 chr11 18965968 18966084 -129817388 + MER5B DNA MER1_type 1 123 -55 215 224 82 0 chr11 18966124 18966173 -129817299 - MER5B DNA MER1_type -124 54 2 870 167 0 0 chr11 18966176 18966308 -129817164 + FLAM_C SINE Alu 2 133 0 751 173 31 80 chr11 18968073 18968235 -129815237 - LTR8A LTR ERV1 0 727 574 1315 214 24 54 chr11 18968241 18968667 -129814805 - LTR8A LTR ERV1 -275 452 40 690 330 87 19 chr11 18968792 18969113 -129814359 + L3 LINE CR1 1231 1573 -4 311 255 47 77 chr11 18969211 18969405 -129814067 + MIR SINE MIR 18 205 -57 500 227 45 9 chr11 18969407 18969517 -129813955 - L2 LINE L2 0 3313 3200 466 303 62 6 chr11 18969677 18969839 -129813633 - MIR SINE MIR -90 172 2 359 322 119 11 chr11 18969971 18970148 -129813324 + L2 LINE L2 3025 3220 -52 592 279 68 44 chr11 18970159 18970269 -129813203 - L2 LINE L2 0 3313 3207 539 297 135 0 chr11 18970269 18970498 -129812974 + MIR SINE MIR 1 260 -2 592 279 68 44 chr11 18970498 18970638 -129812834 - L2 LINE L2 -106 3207 3057 1016 292 88 59 chr11 18972046 18972419 -129811053 - MER115 DNA AcHobo -271 422 39 477 289 39 9 chr11 18972963 18973151 -129810321 - L2 LINE L2 0 3272 3026 693 275 87 10 chr11 18973730 18973937 -129809535 + MIR SINE MIR 38 260 -2 308 277 45 9 chr11 18974668 18974780 -129808692 + LTR7 LTR ERV1 333 448 -2 2671 153 9 22 chr11 18974784 18975248 -129808224 + HERVH LTR ERV1 2 459 -7254 10357 107 9 34 chr11 18975302 18977560 -129805912 + HERVH LTR ERV1 793 2995 -4718 * 10616 113 30 39 chr11 18977539 18979330 -129804142 + HERVH LTR ERV1 3140 4915 -2798 1349 172 23 0 chr11 18979327 18979589 -129803883 + HERVH LTR ERV1 5749 6016 -1697 * 3559 114 5 11 chr11 18979582 18980142 -129803330 + HERVH LTR ERV1 7157 7713 0 1392 174 111 67 chr11 18980142 18980573 -129802899 + LTR7 LTR ERV1 1 450 0 2386 88 0 0 chr11 18980761 18981057 -129802415 + AluSx SINE Alu 1 296 -16 388 278 37 0 chr11 18981113 18981221 -129802251 + L2 LINE L2 3161 3272 0 187 348 22 22 chr11 18981318 18981407 -129802065 - L2 LINE L2 -1893 1421 1333 365 269 16 32 chr11 18981417 18981602 -129801870 + L1MC/D LINE L1 5613 5801 -441 1624 201 191 73 chr11 18981619 18981775 -129801697 - LTR41 LTR ERVL -6 767 631 2173 109 0 3 chr11 18981775 18982060 -129801412 + AluSx SINE Alu 12 295 -17 1624 201 191 73 chr11 18982060 18982589 -129800883 - LTR41 LTR ERVL -142 631 1 325 294 6 75 chr11 18982597 18982757 -129800715 + L1ME4a LINE L1 5686 5803 -439 1731 193 7 10 chr11 18982823 18983119 -129800353 - AluJo SINE Alu -17 295 1 480 305 106 75 chr11 18983269 18983377 -129800095 + L1ME4a LINE L1 5657 5760 -361 2199 119 6 3 chr11 18983377 18983689 -129799783 - AluSq SINE Alu 0 313 1 480 305 106 75 chr11 18983689 18983854 -129799618 + L1ME4a LINE L1 5760 5946 -175 2112 108 21 3 chr11 18983854 18984142 -129799330 - AluSx SINE Alu -19 293 1 480 305 106 75 chr11 18984142 18984215 -129799257 + L1ME4a LINE L1 5946 6015 -106 254 240 120 56 chr11 18984575 18984700 -129798772 + MIR3 SINE MIR 49 181 -27 208 227 23 0 chr11 18985104 18985148 -129798324 - L2 LINE L2 -2 3270 3226 269 156 91 150 chr11 18985221 18985394 -129798078 + L2 LINE L2 2870 3032 -240 689 239 35 25 chr11 18985483 18985680 -129797792 - MIR SINE MIR -31 231 33 385 360 29 0 chr11 18985715 18985854 -129797618 + L2 LINE L2 3171 3313 0 305 317 59 48 chr11 18985837 18985935 -129797537 + MIR SINE MIR 74 169 -93 * 189 74 0 0 chr11 18985935 18985962 -129797510 + (TA)n Simple_repeat Simple_repeat 1 27 0 2392 95 0 0 chr11 18985962 18986257 -129797215 - AluSx SINE Alu -17 295 1 305 317 59 48 chr11 18986257 18986343 -129797129 + MIR SINE MIR 168 261 -1 475 193 75 53 chr11 18986679 18986826 -129796646 + MIR3 SINE MIR 3 159 -49 2348 99 0 0 chr11 18986914 18987208 -129796264 - AluSx SINE Alu -18 294 1 318 239 135 25 chr11 18987406 18987569 -129795903 + L1ME4a LINE L1 5790 5970 -151 237 156 52 78 chr11 18987593 18987670 -129795802 + MIR SINE MIR 179 253 -9 247 204 0 0 chr11 18987781 18987830 -129795642 - L1MC4 LINE L1 -1339 6703 6655 234 233 0 0 chr11 18988506 18988549 -129794923 - L2 LINE L2 -9 3304 3262 376 165 35 24 chr11 18988568 18988653 -129794819 - L2 LINE L2 -2 3311 3226 203 318 0 45 chr11 18988843 18988909 -129794563 - MIR SINE MIR -72 190 128 333 238 164 16 chr11 18989061 18989183 -129794289 - MIR SINE MIR -121 141 2 570 232 35 0 chr11 18989764 18989906 -129793566 - MIR3 SINE MIR -3 205 59 1141 204 31 9 chr11 18989907 18990133 -129793339 - MIR SINE MIR -18 244 14 540 254 55 30 chr11 18990490 18990655 -129792817 - MIR SINE MIR -74 188 20 267 256 211 0 chr11 18991460 18991550 -129791922 + MIR SINE MIR 19 127 -135 356 284 155 0 chr11 18991550 18991707 -129791765 + MLT1G1 LTR MaLR 1 228 -367 2147 115 7 3 chr11 18991707 18992002 -129791470 + AluSq SINE Alu 3 298 -15 356 284 155 0 chr11 18992002 18992017 -129791455 + MLT1G1 LTR MaLR 228 239 -356 348 250 0 0 chr11 18992020 18992092 -129791380 + MIR SINE MIR 179 250 -12 279 239 14 42 chr11 18992623 18992694 -129790778 - MIR3 SINE MIR -29 179 111 270 281 53 44 chr11 18993044 18993158 -129790314 + MIR3 SINE MIR 73 187 -21 312 271 85 68 chr11 18993172 18993349 -129790123 + L2 LINE L2 2700 2879 -435 243 355 48 30 chr11 18995250 18995416 -129788056 + MER5B DNA MER1_type 3 171 -7 189 259 103 0 chr11 18995793 18995851 -129787621 + L2 LINE L2 3211 3274 -39 487 247 247 0 chr11 18995988 18996150 -129787322 + MIR SINE MIR 49 250 -12 213 65 0 0 chr11 18996922 18996953 -129786519 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 533 259 93 0 chr11 19002951 19003090 -129780382 + MIR3 SINE MIR 39 190 -18 183 42 0 0 chr11 19003705 19003729 -129779743 + (CA)n Simple_repeat Simple_repeat 1 24 0 361 241 43 111 chr11 19003738 19003900 -129779572 + MIR3 SINE MIR 8 158 -50 246 161 36 36 chr11 19003993 19004049 -129779423 + MIR3 SINE MIR 105 160 -48 335 256 12 12 chr11 19004051 19004137 -129779335 + MER5B DNA MER1_type 3 88 -90 458 271 41 47 chr11 19004301 19004471 -129779001 + LTR33 LTR ERVL 3 171 -350 428 204 174 35 chr11 19004535 19004592 -129778880 + LTR33 LTR ERVL 326 374 -147 2312 100 3 0 chr11 19004592 19004892 -129778580 - AluSx SINE Alu -9 303 3 428 204 174 35 chr11 19004892 19005006 -129778466 + LTR33 LTR ERVL 374 521 0 523 306 89 6 chr11 19005312 19005469 -129778003 - L2 LINE L2 0 3272 3103 2139 111 47 3 chr11 19005763 19006061 -129777411 + AluSq SINE Alu 1 311 -2 2507 83 0 0 chr11 19006410 19006710 -129776762 - AluY SINE Alu -11 300 1 795 109 101 13 chr11 19007543 19007701 -129775771 - LTR7 LTR ERV1 -232 218 1 501 151 0 0 chr11 19007858 19007944 -129775528 + CT-rich Low_complexity Low_complexity 2 87 0 1811 174 0 13 chr11 19008001 19008300 -129775172 - AluSx SINE Alu -17 295 1 2074 114 0 49 chr11 19008405 19008729 -129774743 + AluSx SINE Alu 1 308 -4 442 294 96 18 chr11 19008766 19009038 -129774434 + HAL1 LINE L1 1986 2278 -229 791 159 32 0 chr11 19009045 19009171 -129774301 + FRAM SINE Alu 26 155 -21 261 245 21 63 chr11 19009179 19009322 -129774150 + HAL1 LINE L1 2291 2427 -80 2093 125 16 38 chr11 19009381 19009700 -129773772 - AluSx SINE Alu 0 312 1 1935 71 0 84 chr11 19009701 19010011 -129773461 + MER4E LTR ERV1 483 766 0 2371 107 0 0 chr11 19010073 19010382 -129773090 + AluSc SINE Alu 1 309 0 307 239 34 11 chr11 19010387 19010475 -129772997 + ORSL DNA AcHobo 186 275 0 828 275 35 53 chr11 19010689 19011143 -129772329 + L1ME LINE L1 5347 5792 -329 2226 122 3 0 chr11 19011147 19011458 -129772014 + AluSx SINE Alu 1 312 0 1775 164 21 93 chr11 19011583 19011879 -129771593 - MLT1B LTR MaLR 0 390 74 2182 133 0 13 chr11 19011879 19012187 -129771285 - AluSx SINE Alu -8 304 1 1775 164 21 93 chr11 19012187 19012203 -129771269 - MLT1B LTR MaLR -316 74 58 1829 149 49 7 chr11 19012203 19012491 -129770981 - AluSx SINE Alu -12 300 1 1775 164 21 93 chr11 19012491 19012597 -129770875 - MLT1B LTR MaLR -332 58 1 1985 114 4 0 chr11 19013188 19013452 -129770020 - AluSq SINE Alu -48 265 1 344 163 75 0 chr11 19013582 19013662 -129769810 - MER53 DNA DNA 0 189 104 1783 138 10 58 chr11 19013673 19013964 -129769508 + AluJb SINE Alu 1 277 -35 256 103 26 0 chr11 19013964 19014003 -129769469 - MER53 DNA DNA -147 42 3 340 333 145 11 chr11 19014390 19014576 -129768896 + MIR SINE MIR 50 260 -2 184 258 68 104 chr11 19014609 19014830 -129768642 - L2 LINE L2 0 3313 3101 1022 109 63 11 chr11 19014914 19015088 -129768384 - MLT1B LTR MaLR 0 390 208 793 110 152 0 chr11 19015081 19015226 -129768246 - LTR24C LTR ERV1 -457 178 12 * 2832 7 0 0 chr11 19015279 19015579 -129767893 - AluYa5 SINE Alu -11 300 1 422 214 121 29 chr11 19015590 19015774 -129767698 - L1MB8 LINE L1 -2 6176 5975 2239 104 10 0 chr11 19018303 19018592 -129764880 + AluSq SINE Alu 5 296 -17 2063 139 3 23 chr11 19018780 19019083 -129764389 - AluSx SINE Alu -15 297 1 1643 125 79 59 chr11 19019329 19019372 -129764100 - AluSx SINE Alu -2 310 269 186 43 0 0 chr11 19019372 19019395 -129764077 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1643 125 79 59 chr11 19019395 19019655 -129763817 - AluSx SINE Alu -43 269 1 1186 120 8 68 chr11 19019897 19020026 -129763446 - Tigger2 DNA MER2_type -2482 236 128 2373 119 0 0 chr11 19020026 19020338 -129763134 - AluSx SINE Alu 0 312 1 1186 120 8 68 chr11 19020338 19020458 -129763014 - Tigger2 DNA MER2_type -2590 128 2 510 301 236 0 chr11 19020740 19020939 -129762533 + MIR SINE MIR 7 252 -10 365 229 143 67 chr11 19021072 19021086 -129762386 + L2 LINE L2 3088 3100 -213 1786 152 50 3 chr11 19021086 19021383 -129762089 - AluJb SINE Alu -1 311 1 365 229 143 67 chr11 19021383 19021578 -129761894 + L2 LINE L2 3100 3313 0 2106 92 3 7 chr11 19021605 19021912 -129761560 + AluY SINE Alu 1 306 0 274 246 14 0 chr11 19021912 19021981 -129761491 - MIR SINE MIR -94 114 45 1472 150 25 29 chr11 19022405 19022723 -129760749 + LTR8 LTR ERV1 256 590 -137 252 204 80 105 chr11 19022795 19022883 -129760589 - L1MB8 LINE L1 -2332 5476 5392 2241 121 0 3 chr11 19022883 19023197 -129760275 - AluSq SINE Alu 0 313 1 252 204 80 105 chr11 19023197 19023270 -129760202 - L1MB8 LINE L1 -2416 5392 5319 229 229 0 0 chr11 19023488 19023536 -129759936 + MER53 DNA DNA 1 48 -141 418 164 410 0 chr11 19023539 19023673 -129759799 + MER53 DNA DNA 1 189 0 486 200 214 32 chr11 19023886 19023996 -129759476 - MER113 DNA MER1_type? -261 260 171 2121 83 97 0 chr11 19023996 19024274 -129759198 + AluSg SINE Alu 1 305 -5 486 200 214 32 chr11 19024274 19024383 -129759089 - MER113 DNA MER1_type? -350 171 1 1983 168 96 53 chr11 19024448 19024918 -129758554 - LTR2B LTR ERV1 0 490 1 434 159 0 0 chr11 19025020 19025089 -129758383 - LTR8 LTR ERV1 0 691 623 2069 106 4 4 chr11 19025090 19025365 -129758107 + AluSg SINE Alu 1 275 -35 235 28 0 0 chr11 19025392 19025428 -129758044 + MER41A LTR ERV1 429 464 -90 581 210 0 17 chr11 19025457 19025576 -129757896 - LTR8 LTR ERV1 -54 637 521 192 97 0 0 chr11 19027136 19027167 -129756305 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 39459 60 7 2 chr11 19027169 19033259 -129750213 - L1PA5 LINE L1 -27 6127 11 2838 131 7 86 chr11 19033272 19033845 -129749627 - LTR8 LTR ERV1 -163 528 1 3719 131 46 7 chr11 19033855 19034466 -129749006 + MER41B LTR ERV1 1 635 0 1049 196 18 40 chr11 19034669 19034805 -129748667 + AluJo SINE Alu 1 133 -179 1952 142 0 4 chr11 19034805 19035113 -129748359 + AluSx SINE Alu 3 309 0 1049 196 18 40 chr11 19035113 19035200 -129748272 + AluJo SINE Alu 133 220 -92 322 49 0 0 chr11 19035200 19035241 -129748231 + AluSg/x SINE Alu 84 124 -176 255 156 23 8 chr11 19035341 19035395 -129748077 - Alu SINE Alu -257 43 1 335 213 120 47 chr11 19035406 19035556 -129747916 + L1MC5 LINE L1 7327 7487 -474 1850 137 4 11 chr11 19035628 19035906 -129747566 + AluJo SINE Alu 21 296 -16 1397 162 107 21 chr11 19035906 19036234 -129747238 + L1MB8 LINE L1 5819 6174 -4 414 161 174 7 chr11 19036261 19036410 -129747062 + L1MC5 LINE L1 7521 7694 -267 1716 119 36 46 chr11 19036832 19037134 -129746338 + AluJb SINE Alu 3 301 -11 213 295 0 16 chr11 19037141 19037202 -129746270 - MIR3 SINE MIR -4 204 145 401 233 69 31 chr11 19037253 19037412 -129746060 + MER103 DNA DNA 1 165 -1 190 237 0 0 chr11 19037470 19037508 -129745964 - MIR3 SINE MIR -49 159 122 1537 160 97 3 chr11 19038319 19038619 -129744853 - MER7A DNA MER2_type 0 346 21 1346 172 57 0 chr11 19038863 19039107 -129744365 + AluJb SINE Alu 42 299 -13 270 275 46 0 chr11 19039798 19039907 -129743565 + MIR SINE MIR 149 262 0 356 289 114 13 chr11 19039949 19040098 -129743374 - L3 LINE CR1 -88 1489 1326 223 342 92 8 chr11 19040098 19040218 -129743254 - L2 LINE L2 -20 3252 3123 21 0 0 0 chr11 19040564 19040585 -129742887 + AT_rich Low_complexity Low_complexity 1 21 0 305 337 21 0 chr11 19041154 19041249 -129742223 + L1ME LINE L1 21 117 -5953 1822 144 10 39 chr11 19041358 19041664 -129741808 - AluSq SINE Alu -16 297 1 1739 173 13 23 chr11 19041859 19042159 -129741313 + AluJo SINE Alu 3 299 -13 2074 122 7 13 chr11 19042429 19042733 -129740739 + AluSx SINE Alu 1 302 -10 198 167 0 133 chr11 19043961 19044021 -129739451 + L3b LINE CR1 1432 1483 -100 * 219 346 0 58 chr11 19043971 19044075 -129739397 - MER5A DNA MER1_type -32 157 60 274 308 154 10 chr11 19044439 19044543 -129738929 + L2 LINE L2 3148 3266 -6 821 128 0 0 chr11 19044652 19044769 -129738703 + AluJo/FLAM SINE Alu 1 117 -185 303 130 103 30 chr11 19044769 19044953 -129738519 + AluJ SINE Alu 46 287 -15 2028 136 19 23 chr11 19044964 19045273 -129738199 + AluSx SINE Alu 1 308 -4 1322 68 0 0 chr11 19046208 19046371 -129737101 + AluY SINE Alu 136 298 -13 1557 153 127 4 chr11 19046805 19047073 -129736399 - AluJb SINE Alu -11 301 1 21 0 0 0 chr11 19047109 19047130 -129736342 + AT_rich Low_complexity Low_complexity 1 21 0 2262 68 35 66 chr11 19050751 19050815 -129732657 + THE1A LTR MaLR 1 65 -290 186 43 0 0 chr11 19050815 19050838 -129732634 + (TG)n Simple_repeat Simple_repeat 2 24 0 2262 68 35 66 chr11 19050838 19051007 -129732465 + THE1A LTR MaLR 65 222 -133 2223 100 17 3 chr11 19051007 19051306 -129732166 + AluSq SINE Alu 1 303 -10 2262 68 35 66 chr11 19051306 19051437 -129732035 + THE1A LTR MaLR 222 355 0 1182 64 0 0 chr11 19052730 19052871 -129730601 - AluSg/x SINE Alu -8 302 162 21 36 0 0 chr11 19053389 19053417 -129730055 + AT_rich Low_complexity Low_complexity 1 28 0 777 201 5 22 chr11 19053596 19053780 -129729692 + LTR28 LTR ERV1 1 181 -839 299 194 15 0 chr11 19053799 19053866 -129729606 + LTR1 LTR ERV1 119 186 -599 * 1212 211 20 32 chr11 19053840 19054181 -129729291 + LTR27 LTR ERV1 300 636 0 6741 20 9 1 chr11 19054285 19055070 -129728402 + L1PA4 LINE L1 5364 6154 -1 777 161 31 0 chr11 19055330 19055460 -129728012 - AluJo SINE Alu -177 135 2 2205 85 32 0 chr11 19056639 19056921 -129726551 + AluSc SINE Alu 1 291 -18 896 205 18 6 chr11 19057023 19057194 -129726278 - FAM SINE Alu -2 173 1 1754 221 86 29 chr11 19058977 19059488 -129723984 + MER77 LTR ERV1 58 597 -8 979 76 0 0 chr11 19063615 19063734 -129719738 + AluY SINE Alu 178 296 -15 1762 123 84 0 chr11 19063977 19064306 -129719166 + AluSx SINE Alu 1 351 0 1234 193 157 0 chr11 19064346 19064595 -129718877 + AluJb SINE Alu 1 288 -24 2015 116 26 20 chr11 19064605 19064907 -129718565 + AluSx SINE Alu 2 305 -7 3326 251 151 11 chr11 19065911 19066996 -129716476 - L2 LINE L2 -386 2928 1692 451 159 16 10 chr11 19066996 19067196 -129716276 + (TA)n Simple_repeat Simple_repeat 1 201 0 2336 104 0 7 chr11 19067198 19067506 -129715966 - AluSg SINE Alu -4 306 1 5800 102 54 12 chr11 19067513 19068606 -129714866 - L1MA4A LINE L1 -4 6299 5162 297 91 0 0 chr11 19068606 19068650 -129714822 - AluSx SINE Alu -10 292 249 1985 105 11 25 chr11 19068752 19069029 -129714443 - AluSx SINE Alu -39 273 1 3328 171 27 1 chr11 19069029 19069689 -129713783 - L1MA4A LINE L1 -978 5168 4492 709 296 120 8 chr11 19069716 19069966 -129713506 - L2 LINE L2 -1636 1678 1401 265 171 60 162 chr11 19071030 19071147 -129712325 - L3 LINE CR1 -17 1560 1456 411 296 101 38 chr11 19071235 19071292 -129712180 - L3 LINE CR1 -314 1263 1211 2472 80 0 0 chr11 19071292 19071593 -129711879 - AluY SINE Alu -10 301 1 411 296 101 38 chr11 19071593 19071694 -129711778 - L3 LINE CR1 -366 1211 1095 252 336 251 22 chr11 19071745 19071843 -129711629 - L3 LINE CR1 -823 754 680 1869 163 13 3 chr11 19071843 19072143 -129711329 + AluJb SINE Alu 1 303 -9 252 336 251 22 chr11 19072143 19072630 -129710842 - L3 LINE CR1 -897 680 35 320 302 12 0 chr11 19072853 19072939 -129710533 - L3 LINE CR1 -70 1507 1421 1691 156 15 0 chr11 19073182 19073445 -129710027 - AluJb SINE Alu -16 296 30 2084 102 3 39 chr11 19073745 19074050 -129709422 - AluSx SINE Alu -18 294 1 2120 114 4 0 chr11 19074332 19074640 -129708832 + AluSg SINE Alu 1 309 0 259 192 0 0 chr11 19075349 19075401 -129708071 + Alu SINE Alu 251 302 0 2222 86 14 0 chr11 19075737 19076029 -129707443 + AluSx SINE Alu 1 296 -16 23 33 0 0 chr11 19077445 19077475 -129705997 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 19077739 19077768 -129705704 + AT_rich Low_complexity Low_complexity 1 29 0 2047 162 0 0 chr11 19077794 19078096 -129705376 + AluSx SINE Alu 1 302 -10 1223 133 43 179 chr11 19078241 19078588 -129704884 + AluJb SINE Alu 1 300 -2 445 212 106 0 chr11 19078832 19078917 -129704555 - FLAM_A SINE Alu -28 114 21 2039 166 6 3 chr11 19079290 19079633 -129703839 - L1MB7 LINE L1 -21 6163 5820 1427 115 0 5 chr11 19079778 19079969 -129703503 + AluSq SINE Alu 1 190 -123 457 206 0 16 chr11 19079970 19080089 -129703383 - L1MDb LINE L1 -4769 1558 1159 958 65 41 0 chr11 19080427 19080550 -129702922 + AluSg/x SINE Alu 177 304 -8 643 101 20 0 chr11 19082975 19083074 -129700398 - AluSg/x SINE Alu -2 310 210 38 51 0 0 chr11 19083268 19083327 -129700145 + AT_rich Low_complexity Low_complexity 1 59 0 285 29 0 0 chr11 19083327 19083361 -129700111 + (TA)n Simple_repeat Simple_repeat 1 34 0 2251 105 0 3 chr11 19083461 19083755 -129699717 - AluSq SINE Alu -20 293 1 1629 160 4 11 chr11 19083767 19084035 -129699437 - AluJb SINE Alu -45 267 2 684 182 0 25 chr11 19084395 19084516 -129698956 + FLAM_A SINE Alu 16 133 -9 246 370 74 9 chr11 19084985 19085093 -129698379 + L2 LINE L2 3150 3264 -8 1241 139 0 0 chr11 19085615 19085787 -129697685 - AluJo SINE Alu -12 300 129 2505 70 0 0 chr11 19085791 19086089 -129697383 - AluY SINE Alu -13 298 1 435 237 96 22 chr11 19086283 19086418 -129697054 + MIR SINE MIR 118 262 0 1950 102 48 110 chr11 19087967 19088124 -129695348 - L1MA4 LINE L1 -33 6267 6102 978 144 0 0 chr11 19088124 19088256 -129695216 - AluJo SINE Alu -169 133 2 1950 102 48 110 chr11 19088256 19088498 -129694974 - L1MA4 LINE L1 -198 6102 5893 242 118 0 0 chr11 19088586 19088620 -129694852 - L1MA4 LINE L1 -377 5926 5893 1670 108 170 4 chr11 19088757 19089016 -129694456 - AluSx SINE Alu 0 302 1 898 186 90 16 chr11 19089027 19089215 -129694257 - AluJb SINE Alu -26 286 85 869 267 200 14 chr11 19089688 19090179 -129693293 + L1MC4a LINE L1 5329 5910 -1898 648 140 21 0 chr11 19090221 19090314 -129693158 - FLAM_A SINE Alu -14 128 34 305 239 77 54 chr11 19090338 19090468 -129693004 + L1ME4a LINE L1 5986 6118 -3 2025 107 4 0 chr11 19090919 19091191 -129692281 + AluSc SINE Alu 1 273 -36 2143 106 3 20 chr11 19091960 19092262 -129691210 - AluSg SINE Alu -12 298 2 2164 118 16 0 chr11 19092389 19092694 -129690778 - AluSq SINE Alu -3 310 1 1992 137 0 0 chr11 19092717 19093021 -129690451 - AluSx SINE Alu 0 309 6 1551 122 33 116 chr11 19093341 19093676 -129689796 - AluYb8 SINE Alu -11 307 1 489 352 116 0 chr11 19093927 19094181 -129689291 - L2 LINE L2 -201 3071 2785 358 257 0 0 chr11 19094355 19094429 -129689043 - MIR SINE MIR 0 262 189 612 255 84 11 chr11 19094429 19094660 -129688812 + MIR SINE MIR 8 262 0 218 339 54 39 chr11 19095133 19095263 -129688209 + L2 LINE L2 3141 3272 0 318 198 223 8 chr11 19095541 19095662 -129687810 + L1MC4a LINE L1 5757 5903 -1905 243 305 156 7 chr11 19096137 19096291 -129687181 + MIR3 SINE MIR 9 185 -23 21 71 0 0 chr11 19096894 19096936 -129686536 + AT_rich Low_complexity Low_complexity 1 42 0 2360 103 0 3 chr11 19097190 19097500 -129685972 - AluSc SINE Alu 0 309 1 1821 152 17 3 chr11 19098625 19098914 -129684558 - AluJo SINE Alu -19 293 1 22 35 0 0 chr11 19099171 19099200 -129684272 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 0 chr11 19099222 19099264 -129684208 + (TA)n Simple_repeat Simple_repeat 1 42 0 289 168 32 84 chr11 19099266 19099361 -129684111 - L1MC4 LINE L1 -1339 6703 6614 2433 71 0 3 chr11 19099384 19099680 -129683792 - AluSc SINE Alu -14 295 1 2187 109 0 0 chr11 19099746 19100054 -129683418 - AluSx SINE Alu 0 308 1 2046 126 13 3 chr11 19100797 19101106 -129682366 - AluSx SINE Alu 0 312 1 1934 128 14 7 chr11 19101553 19101842 -129681630 + AluSx SINE Alu 1 291 -21 22 70 0 0 chr11 19101928 19101971 -129681501 + AT_rich Low_complexity Low_complexity 1 43 0 650 144 0 48 chr11 19102234 19102338 -129681134 - FLAM_A SINE Alu -18 124 26 2321 93 3 3 chr11 19102736 19103036 -129680436 - AluSp SINE Alu -13 300 1 180 200 22 22 chr11 19103104 19103149 -129680323 + L3 LINE CR1 361 405 -1172 763 238 126 10 chr11 19103302 19103508 -129679964 - MIR SINE MIR -30 232 3 230 282 84 0 chr11 19103508 19103578 -129679894 - MIR3 SINE MIR -40 168 93 2286 106 0 7 chr11 19103724 19104027 -129679445 - AluSx SINE Alu -11 301 1 2330 99 0 6 chr11 19104117 19104430 -129679042 - AluSq SINE Alu -2 311 1 749 208 0 0 chr11 19104470 19104595 -129678877 - FLAM_A SINE Alu -8 125 1 218 376 0 35 chr11 19104764 19104849 -129678623 + L2 LINE L2 3154 3235 -37 269 256 169 50 chr11 19105109 19105269 -129678203 + MER5A DNA MER1_type 1 179 -10 2203 106 14 0 chr11 19105455 19105748 -129677724 + AluSg SINE Alu 1 297 -13 343 294 43 0 chr11 19105783 19105875 -129677597 - L2 LINE L2 -8 3264 3169 198 373 13 0 chr11 19105884 19105959 -129677513 + MIR SINE MIR 1 76 -186 2135 108 6 19 chr11 19106571 19106885 -129676587 + AluSx SINE Alu 1 310 -2 2039 131 17 0 chr11 19106888 19107179 -129676293 + AluSx SINE Alu 1 296 -16 2389 86 0 7 chr11 19107182 19107485 -129675987 + AluSc SINE Alu 1 301 -8 1244 134 0 0 chr11 19107485 19107664 -129675808 + AluSg/x SINE Alu 132 310 0 2676 163 92 0 chr11 19107770 19108293 -129675179 + L1MB5 LINE L1 5587 6157 -17 248 29 0 0 chr11 19108402 19108437 -129675035 - Alu SINE Alu -7 296 262 2447 71 3 3 chr11 19108548 19108859 -129674613 - AluY SINE Alu 0 311 1 31 26 0 0 chr11 19108887 19108925 -129674547 + AT_rich Low_complexity Low_complexity 1 38 0 1202 160 0 0 chr11 19108960 19109135 -129674337 - FAM SINE Alu 0 175 1 429 260 93 27 chr11 19109182 19109332 -129674140 - MIR SINE MIR -98 164 5 517 256 0 16 chr11 19109465 19109586 -129673886 + MIR3 SINE MIR 82 200 -8 1245 122 35 0 chr11 19109915 19110087 -129673385 + AluSx SINE Alu 1 178 -134 2041 132 3 3 chr11 19110261 19110550 -129672922 - AluSq SINE Alu -22 291 3 2251 125 0 0 chr11 19110565 19110877 -129672595 - AluSx SINE Alu 0 312 1 694 148 35 26 chr11 19111354 19111469 -129672003 + AluJb SINE Alu 2 117 -195 441 0 0 0 chr11 19111469 19111518 -129671954 + (CA)n Simple_repeat Simple_repeat 2 50 0 334 248 165 15 chr11 19111690 19111823 -129671649 + L1MC/D LINE L1 5407 5559 -2249 471 250 146 28 chr11 19112065 19112107 -129671365 - MER5A DNA MER1_type -18 171 135 1988 133 7 0 chr11 19112107 19112400 -129671072 + AluSx SINE Alu 1 295 -17 471 250 146 28 chr11 19112400 19112501 -129670971 - MER5A DNA MER1_type -54 135 11 618 285 35 12 chr11 19112515 19112687 -129670785 + MIR SINE MIR 21 196 -66 1605 140 4 20 chr11 19112690 19112940 -129670532 + AluSx SINE Alu 1 246 -66 2161 93 38 3 chr11 19112940 19113229 -129670243 + AluSx SINE Alu 1 300 -12 487 83 0 0 chr11 19113231 19113291 -129670181 + AluSx SINE Alu 235 294 -17 227 273 0 0 chr11 19113293 19113348 -129670124 + MIR SINE MIR 202 256 -6 1703 135 23 63 chr11 19113473 19113647 -129669825 - AluJb SINE Alu -21 291 133 2263 103 0 0 chr11 19113647 19113939 -129669533 + AluSx SINE Alu 9 300 -12 1703 135 23 63 chr11 19113939 19114067 -129669405 - AluJb SINE Alu -179 133 1 1600 201 7 0 chr11 19114145 19114443 -129669029 + AluJo SINE Alu 1 300 -12 1765 163 3 3 chr11 19114688 19114982 -129668490 + AluJb SINE Alu 1 294 -18 2315 113 0 0 chr11 19115102 19115404 -129668068 + AluSx SINE Alu 1 302 -10 1844 141 38 0 chr11 19116926 19117216 -129666256 + AluSx SINE Alu 1 301 -11 2316 110 0 0 chr11 19117446 19117754 -129665718 - AluSx SINE Alu -4 308 1 719 207 8 0 chr11 19118099 19118220 -129665252 + FRAM SINE Alu 45 166 -10 1177 164 141 11 chr11 19118477 19118746 -129664726 - L1MC4 LINE L1 0 8042 7739 337 309 65 0 chr11 19118768 19118891 -129664581 + MIR SINE MIR 76 206 -56 292 198 0 172 chr11 19119021 19119137 -129664335 - Charlie8 DNA MER1_type -3 2414 232 195 129 0 0 chr11 19119162 19119193 -129664279 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 234 245 19 0 chr11 19119262 19119315 -129664157 + MIR3 SINE MIR 151 204 -4 1497 183 11 11 chr11 19119422 19119707 -129663765 + AluJo SINE Alu 5 289 -23 2343 89 0 0 chr11 19120456 19120748 -129662724 - AluY SINE Alu -19 292 1 706 264 114 62 chr11 19120865 19121270 -129662202 + L1ME4a LINE L1 5479 5904 -217 476 245 6 37 chr11 19121254 19121417 -129662055 + L1ME3A LINE L1 5793 5950 -220 * 1828 184 3 0 chr11 19122019 19122329 -129661143 + AluJb SINE Alu 1 311 -1 2003 127 27 3 chr11 19122625 19122924 -129660548 + AluSx SINE Alu 1 306 -6 1169 191 126 9 chr11 19123277 19123507 -129659965 + AluJo SINE Alu 39 295 -17 2422 83 0 0 chr11 19123511 19123813 -129659659 + AluY SINE Alu 3 304 -7 2336 94 3 0 chr11 19124077 19124375 -129659097 + AluSp SINE Alu 1 299 -14 494 217 46 66 chr11 19124386 19124538 -129658934 - MIR SINE MIR 0 262 114 251 129 81 48 chr11 19124915 19124977 -129658495 + CT-rich Low_complexity Low_complexity 2 65 0 2165 109 14 0 chr11 19125707 19125991 -129657481 - AluSx SINE Alu -23 289 2 253 286 129 2 chr11 19126306 19126414 -129657058 + MIR SINE MIR 50 171 -62 197 246 33 0 chr11 19126462 19126523 -129656949 + L2 LINE L2 3162 3224 -48 457 301 60 18 chr11 19127175 19127341 -129656131 + MIR SINE MIR 20 192 -70 1021 114 13 13 chr11 19127403 19127561 -129655911 + HUERS-P1 LTR ERV1 6106 6263 0 3997 106 3 44 chr11 19127561 19127825 -129655647 + LTR8 LTR ERV1 1 274 -417 1813 116 98 11 chr11 19127825 19128084 -129655388 + AluSx SINE Alu 1 311 0 208 0 0 0 chr11 19128084 19128123 -129655349 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3997 106 3 44 chr11 19128124 19128455 -129655017 + LTR8 LTR ERV1 274 617 -74 2051 121 0 3 chr11 19128455 19128737 -129654735 + AluSx SINE Alu 1 281 -31 192 40 0 0 chr11 19128737 19128762 -129654710 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 3997 106 3 44 chr11 19128762 19128776 -129654696 + LTR8 LTR ERV1 574 587 -104 221 75 25 0 chr11 19128777 19128817 -129654655 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 267 171 0 0 chr11 19129099 19129140 -129654332 + MLT1A1 LTR MaLR 113 153 -212 2451 85 0 7 chr11 19129142 19129449 -129654023 + AluSx SINE Alu 1 305 -7 1940 161 34 131 chr11 19129551 19130110 -129653362 + MLT1D LTR MaLR 1 505 0 2348 82 0 3 chr11 19130429 19130721 -129652751 - AluSg SINE Alu -19 291 1 319 282 38 70 chr11 19130728 19130941 -129652531 - MIR SINE MIR -10 252 47 237 239 98 11 chr11 19131224 19131316 -129652156 + MIR SINE MIR 92 191 -71 1424 188 57 48 chr11 19131343 19131715 -129651757 + L1MB7 LINE L1 4351 4725 -1421 2303 157 32 39 chr11 19131728 19132160 -129651312 + L1MB7 LINE L1 5466 5894 -284 299 139 0 0 chr11 19132161 19132204 -129651268 + MER49 LTR ERV1 789 831 -92 521 229 20 33 chr11 19132228 19132381 -129651091 + L1MB7 LINE L1 5874 6024 -160 2244 91 14 0 chr11 19132435 19132731 -129650741 + AluSq SINE Alu 2 301 -12 2111 118 20 0 chr11 19132952 19133248 -129650224 + AluSx SINE Alu 1 302 -10 506 88 0 0 chr11 19133958 19134026 -129649446 - AluJb SINE Alu -10 302 235 1024 143 6 12 chr11 19134026 19134187 -129649285 - AluJb SINE Alu -152 160 1 2199 124 0 3 chr11 19134478 19134776 -129648696 - AluSx SINE Alu -15 297 1 * 2321 91 14 0 chr11 19134776 19135071 -129648401 - AluSq SINE Alu -14 299 1 2317 98 3 0 chr11 19135210 19135505 -129647967 - AluSp SINE Alu -9 304 9 1692 158 7 30 chr11 19135649 19135952 -129647520 + AluJo SINE Alu 1 296 -16 563 232 9 0 chr11 19136009 19136121 -129647351 + MER3 DNA MER1_type 1 113 -96 454 252 47 59 chr11 19136121 19136180 -129647292 - L1 LINE L1 -777 5369 5311 2190 122 0 0 chr11 19136180 19136483 -129646989 - AluSg SINE Alu -7 303 1 454 252 47 59 chr11 19136483 19136600 -129646872 - L1 LINE L1 -835 5311 5193 725 169 0 70 chr11 19136600 19136742 -129646730 - FLAM_C SINE Alu 0 133 2 454 252 47 59 chr11 19136742 19136802 -129646670 - L1 LINE L1 -953 5193 5134 531 259 163 52 chr11 19136854 19137179 -129646293 - L1 LINE L1 -1098 5048 4760 2140 123 13 3 chr11 19137179 19137487 -129645985 - AluSx SINE Alu -1 311 1 531 259 163 52 chr11 19137487 19137701 -129645771 - L1 LINE L1 -1386 4760 4449 2219 110 0 7 chr11 19137768 19138069 -129645403 - AluSx SINE Alu -13 299 1 836 150 0 0 chr11 19138085 19138218 -129645254 - FRAM SINE Alu -24 152 20 1547 96 0 14 chr11 19138383 19138592 -129644880 + AluSg/x SINE Alu 85 290 -22 2268 98 10 3 chr11 19139073 19139380 -129644092 + AluSx SINE Alu 1 309 -3 807 241 136 66 chr11 19141151 19141578 -129641894 - L2 LINE L2 -3 3310 2915 686 235 33 6 chr11 19141578 19141761 -129641711 + MER5A DNA MER1_type 2 189 0 807 241 136 66 chr11 19141761 19141795 -129641677 - L2 LINE L2 -398 2915 2885 2419 222 59 19 chr11 19141795 19142385 -129641087 - MER90 LTR ERV1 0 614 1 807 241 136 66 chr11 19142385 19142540 -129640932 - L2 LINE L2 -428 2885 2624 357 301 8 0 chr11 19142837 19142960 -129640512 - MIR SINE MIR -21 241 118 208 215 62 15 chr11 19143113 19143178 -129640294 - MIR SINE MIR -97 165 98 1948 141 10 3 chr11 19143285 19143576 -129639896 + AluSx SINE Alu 1 293 -19 204 343 60 0 chr11 19143878 19143945 -129639527 + L2 LINE L2 3154 3224 -48 1655 181 32 0 chr11 19144121 19144403 -129639069 + AluJb SINE Alu 1 291 -21 277 208 104 0 chr11 19144565 19144642 -129638830 + L1ME LINE L1 5615 5699 -422 2302 117 0 0 chr11 19144904 19145202 -129638270 - AluSx SINE Alu -14 298 1 1966 132 3 3 chr11 19145365 19145682 -129637790 - AluSx SINE Alu 0 317 1 2346 114 3 0 chr11 19145738 19146044 -129637428 - AluSx SINE Alu -5 307 1 2268 99 0 16 chr11 19146200 19146503 -129636969 - AluSx SINE Alu -14 298 1 734 228 44 17 chr11 19148187 19148367 -129635105 + LTR41 LTR ERVL 1 185 -588 787 217 54 89 chr11 19148498 19148811 -129634661 + LTR41 LTR ERVL 460 761 -12 1906 157 7 3 chr11 19148885 19149178 -129634294 + AluJo SINE Alu 1 294 -18 1754 277 76 34 chr11 19149183 19149680 -129633792 + L1MEc LINE L1 37 512 -5884 2491 84 3 0 chr11 19149680 19149988 -129633484 + AluSp SINE Alu 2 310 -3 1754 277 76 34 chr11 19149988 19150269 -129633203 + L1MEc LINE L1 512 852 -5544 2487 71 0 0 chr11 19150269 19150564 -129632908 + AluSx SINE Alu 1 295 -17 1754 277 76 34 chr11 19150564 19150588 -129632884 + L1MEc LINE L1 852 874 -5522 189 319 125 31 chr11 19150623 19150783 -129632689 - L2 LINE L2 -1411 1903 1729 362 265 47 65 chr11 19151051 19151221 -129632251 + MIR SINE MIR 12 178 -84 2380 100 3 0 chr11 19151742 19152053 -129631419 - AluSp SINE Alu -1 312 1 2571 68 0 0 chr11 19152063 19152370 -129631102 - AluY SINE Alu -4 307 1 1252 177 158 11 chr11 19152994 19153260 -129630212 - AluJb SINE Alu -7 305 1 353 263 122 68 chr11 19153301 19153506 -129629966 + MIR SINE MIR 33 248 -14 194 271 0 57 chr11 19153984 19154054 -129629418 + MIR SINE MIR 79 144 -118 2634 49 0 0 chr11 19155468 19155774 -129627698 - AluY SINE Alu -4 307 2 1630 117 121 18 chr11 19156141 19156414 -129627058 + AluSx SINE Alu 2 302 -10 245 305 106 21 chr11 19156487 19156628 -129626844 - MIR SINE MIR -76 186 34 2358 104 10 0 chr11 19156727 19157035 -129626437 + AluSx SINE Alu 1 311 -1 1940 123 54 0 chr11 19157468 19157744 -129625728 - AluSx SINE Alu -21 291 1 2266 88 0 7 chr11 19158632 19158929 -129624543 - AluSx SINE Alu -17 295 1 2280 91 0 19 chr11 19162146 19162455 -129621017 + AluSx SINE Alu 1 303 -9 386 284 118 43 chr11 19162660 19162779 -129620693 - MIR SINE MIR -8 254 145 1223 177 108 59 chr11 19162779 19163067 -129620405 + AluJo SINE Alu 1 302 -10 386 284 118 43 chr11 19163067 19163158 -129620314 - MIR SINE MIR -117 145 28 24 32 0 0 chr11 19163641 19163672 -129619800 + AT_rich Low_complexity Low_complexity 1 31 0 2337 76 23 3 chr11 19164524 19164827 -129618645 - AluSp SINE Alu -4 309 1 965 162 131 5 chr11 19165202 19165393 -129618079 - MER20 DNA MER1_type -4 215 1 259 220 0 0 chr11 19165629 19165679 -129617793 + L2 LINE L2 3258 3307 -6 1235 199 153 0 chr11 19165907 19166168 -129617304 + AluJb SINE Alu 2 302 0 270 0 0 0 chr11 19168497 19168527 -129614945 + (CA)n Simple_repeat Simple_repeat 2 31 0 2307 108 0 3 chr11 19169109 19169415 -129614057 + AluSg SINE Alu 1 305 -5 2171 113 0 0 chr11 19169424 19169708 -129613764 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr11 19169720 19169743 -129613729 + (TAAG)n Simple_repeat Simple_repeat 1 23 0 205 268 0 0 chr11 19170814 19170855 -129612617 + polypurine Low_complexity Low_complexity 3 43 0 852 110 7 29 chr11 19171101 19171237 -129612235 + FLAM_C SINE Alu 1 133 0 2205 121 0 0 chr11 19171241 19171539 -129611933 + AluSc SINE Alu 1 298 -11 386 229 0 0 chr11 19171851 19171934 -129611538 + MER113 DNA MER1_type? 1 83 -438 2153 115 0 13 chr11 19171957 19172262 -129611210 + AluSx SINE Alu 1 301 -11 2494 67 0 3 chr11 19172369 19172667 -129610805 + AluY SINE Alu 1 297 -14 25 0 0 0 chr11 19172670 19172695 -129610777 + AT_rich Low_complexity Low_complexity 1 25 0 1943 79 36 4 chr11 19172786 19173038 -129610434 + AluSq SINE Alu 1 260 -53 255 195 0 0 chr11 19173040 19173143 -129610329 + AluSq SINE Alu 243 345 0 1964 167 0 0 chr11 19173569 19173869 -129609603 + AluJo SINE Alu 1 300 -12 1866 156 14 3 chr11 19174012 19174301 -129609171 + AluJo SINE Alu 1 292 -20 349 162 0 0 chr11 19174304 19174372 -129609100 - L1MB8 LINE L1 -16 6162 6095 600 217 62 62 chr11 19174372 19174434 -129609038 - Tigger2 DNA MER2_type 0 2708 2647 2180 102 3 3 chr11 19174434 19174759 -129608713 + AluSq SINE Alu 1 325 0 600 217 62 62 chr11 19174759 19174856 -129608616 - Tigger2 DNA MER2_type -60 2648 2548 * 861 155 119 10 chr11 19174825 19175019 -129608453 - Tigger2 DNA MER2_type -2503 215 1 936 185 36 15 chr11 19175020 19175215 -129608257 - L1MB7 LINE L1 -87 6097 5899 1944 145 123 14 chr11 19175215 19175573 -129607899 + MLT2C1 LTR ERVL 1 397 0 1536 112 48 8 chr11 19175573 19175823 -129607649 - L1MB7 LINE L1 -281 5903 5644 2219 95 7 3 chr11 19176481 19176776 -129606696 + AluSp SINE Alu 1 296 -17 191 303 200 28 chr11 19177138 19177283 -129606189 - MIR3 SINE MIR -2 206 37 1099 152 0 101 chr11 19177316 19177553 -129605919 - AluJo SINE Alu -17 295 83 2225 102 3 16 chr11 19177575 19177879 -129605593 - AluSg SINE Alu -10 300 1 834 173 150 23 chr11 19178322 19178542 -129604930 + MIR SINE MIR 15 262 0 266 175 50 62 chr11 19178809 19178889 -129604583 + LTR24B LTR ERV1 194 272 -304 2033 126 3 58 chr11 19178891 19179216 -129604256 + AluSx SINE Alu 1 307 -5 2098 124 0 17 chr11 19179223 19179357 -129604115 + AluSx SINE Alu 3 138 -174 2377 83 3 3 chr11 19179357 19179658 -129603814 + AluY SINE Alu 1 301 -10 2098 124 0 17 chr11 19179658 19179822 -129603650 + AluSx SINE Alu 138 296 -16 830 216 26 5 chr11 19179834 19180024 -129603448 + LTR24B LTR ERV1 264 457 -119 567 95 0 0 chr11 19180027 19180111 -129603361 - L1M4 LINE L1 -451 5727 5644 408 180 84 11 chr11 19180390 19180490 -129602982 + LTR24 LTR ERV1 370 467 0 280 242 30 0 chr11 19180662 19180728 -129602744 + Charlie8 DNA MER1_type 2342 2409 -8 2204 99 3 10 chr11 19180979 19181273 -129602199 + AluSx SINE Alu 1 292 -20 2348 107 0 0 chr11 19181650 19181950 -129601522 + AluSc SINE Alu 2 301 -8 2354 92 3 0 chr11 19181955 19182249 -129601223 + AluSc SINE Alu 1 295 -14 908 129 0 102 chr11 19182568 19182754 -129600718 - AluSg/x SINE Alu 0 310 144 262 345 0 40 chr11 19182823 19183000 -129600472 + CT-rich Low_complexity Low_complexity 1 170 0 1460 199 60 3 chr11 19183357 19183704 -129599768 - L1ME3A LINE L1 -160 6010 5644 203 61 30 0 chr11 19183711 19183744 -129599728 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2147 114 0 10 chr11 19183746 19183900 -129599572 - AluSx SINE Alu -25 287 136 2422 86 0 0 chr11 19183900 19184201 -129599271 - AluSx SINE Alu -11 301 1 2147 114 0 10 chr11 19184201 19184336 -129599136 - AluSx SINE Alu -176 136 1 3413 140 37 3 chr11 19184336 19184906 -129598566 + Tigger2 DNA MER2_type 2130 2718 0 1347 193 81 19 chr11 19184906 19185228 -129598244 - MLT1A2 LTR MaLR -32 342 1 280 279 238 7 chr11 19185307 19185454 -129598018 + L3 LINE CR1 796 976 -601 2376 66 42 0 chr11 19185484 19185772 -129597700 - AluSx SINE Alu -12 300 1 2188 99 0 54 chr11 19186107 19186421 -129597051 - AluSq SINE Alu -16 297 1 468 305 58 46 chr11 19186570 19186918 -129596554 + L2 LINE L2 2553 2904 -410 2378 104 0 0 chr11 19186965 19187272 -129596200 - AluSg SINE Alu -3 307 1 2120 133 0 0 chr11 19187522 19187807 -129595665 + AluSx SINE Alu 1 285 -27 457 313 50 16 chr11 19187898 19188080 -129595392 - MER5A DNA MER1_type 0 189 2 187 415 0 0 chr11 19188094 19188159 -129595313 - L3b LINE CR1 -82 1501 1437 2310 112 0 0 chr11 19188165 19188461 -129595011 - AluSc SINE Alu -13 296 1 481 279 56 19 chr11 19188465 19188626 -129594846 - MIR SINE MIR -6 256 90 2054 115 0 83 chr11 19189017 19189355 -129594117 - AluSx SINE Alu -2 310 1 2387 81 3 3 chr11 19189363 19189660 -129593812 - AluSg SINE Alu -13 297 1 691 142 0 0 chr11 19189683 19189789 -129593683 + FLAM_C SINE Alu 2 107 -36 3808 133 33 42 chr11 19189790 19190271 -129593201 + MER50 LTR ERV1 1 477 -257 2080 125 4 0 chr11 19190271 19190572 -129592900 + AluSx SINE Alu 1 302 0 3808 133 33 42 chr11 19190572 19190778 -129592694 + MER50 LTR ERV1 477 683 -51 720 197 0 0 chr11 19190845 19190977 -129592495 + FLAM_C SINE Alu 2 133 0 1962 112 31 7 chr11 19191018 19191305 -129592167 - AluSx SINE Alu -18 294 1 369 0 0 0 chr11 19191434 19191475 -129591997 + (TG)n Simple_repeat Simple_repeat 2 42 0 197 356 122 0 chr11 19191921 19192036 -129591436 + L2 LINE L2 3181 3309 -4 2314 94 7 0 chr11 19192050 19192336 -129591136 - AluSp SINE Alu -25 288 1 3453 130 37 64 chr11 19192954 19193156 -129590316 + MER41B LTR ERV1 1 207 -428 2259 139 0 0 chr11 19193156 19193465 -129590007 + AluSx SINE Alu 1 309 -3 3453 130 37 64 chr11 19193465 19193915 -129589557 + MER41B LTR ERV1 207 635 0 3614 129 49 43 chr11 19193915 19194633 -129588839 + MER41B-int LTR ERV1 1 827 -5119 1068 120 0 115 chr11 19194633 19194833 -129588639 - AluSp SINE Alu 0 313 137 25277 111 33 55 chr11 19194834 19197618 -129585854 + MER41B-int LTR ERV1 817 3660 -2286 2435 97 0 0 chr11 19197618 19197916 -129585556 + AluSq SINE Alu 1 298 -15 25277 111 33 55 chr11 19197916 19198060 -129585412 + MER41B-int LTR ERV1 3660 3806 -2140 2228 112 3 3 chr11 19198060 19198356 -129585116 + AluSx SINE Alu 1 296 -16 2230 118 10 3 chr11 19198361 19198667 -129584805 + AluSg SINE Alu 1 308 -2 25277 111 33 55 chr11 19198667 19199402 -129584070 + MER41B-int LTR ERV1 3810 4375 -1571 2160 126 0 0 chr11 19199402 19199708 -129583764 - AluSx SINE Alu 0 306 1 25277 111 33 55 chr11 19199708 19200520 -129582952 + MER41B-int LTR ERV1 4375 5203 -743 2586 66 0 7 chr11 19200520 19200823 -129582649 + AluY SINE Alu 1 301 -10 1286 118 0 0 chr11 19200823 19200993 -129582479 + AluYa5 SINE Alu 133 302 -9 2175 120 3 3 chr11 19201004 19201305 -129582167 + AluSg SINE Alu 1 301 -9 306 167 33 0 chr11 19201305 19201365 -129582107 + AluSp SINE Alu 134 195 -108 849 108 108 0 chr11 19201448 19201568 -129581904 - AluSq/x SINE Alu -180 133 1 2052 155 0 16 chr11 19201778 19202095 -129581377 + AluJb SINE Alu 1 312 0 2249 96 7 3 chr11 19202160 19202453 -129581019 + AluY SINE Alu 2 295 -16 392 232 89 36 chr11 19202453 19202565 -129580907 + MIR SINE MIR 14 131 -131 682 104 0 19 chr11 19202628 19202734 -129580738 - AluSg/x SINE Alu -4 308 205 560 170 57 0 chr11 19205377 19205483 -129577989 + MER103 DNA DNA 55 166 0 1378 124 9 0 chr11 19205486 19205711 -129577761 - L1PA16 LINE L1 0 6166 5940 419 315 0 8 chr11 19205841 19205971 -129577501 + MIR SINE MIR 18 146 -62 455 197 111 26 chr11 19206906 19207023 -129576449 + MIR SINE MIR 88 214 -48 2362 87 7 0 chr11 19208378 19208678 -129574794 - AluSq SINE Alu -9 304 3 241 316 26 0 chr11 19208930 19209006 -129574466 - L2 LINE L2 -181 3091 3014 181 217 22 0 chr11 19209131 19209177 -129574295 - L2 LINE L2 -1 3312 3266 273 317 0 24 chr11 19209191 19209273 -129574199 - MIR SINE MIR 0 262 183 421 250 83 15 chr11 19209815 19209947 -129573525 - MIR SINE MIR -121 141 1 325 307 33 26 chr11 19210002 19210155 -129573317 + L3 LINE CR1 1410 1563 -14 292 314 197 0 chr11 19210815 19210952 -129572520 - L2 LINE L2 -2 3270 3107 218 299 13 39 chr11 19210999 19211076 -129572396 + L2 LINE L2 3225 3299 -14 734 129 0 24 chr11 19211087 19211211 -129572261 - FLAM_C SINE Alu -20 123 3 357 312 76 57 chr11 19211407 19211583 -129571889 + L2 LINE L2 2597 2781 -533 1530 96 200 20 chr11 19211583 19211833 -129571639 - AluSg1 SINE Alu -14 295 1 357 312 76 57 chr11 19211833 19211919 -129571553 + L2 LINE L2 2781 2864 -450 492 285 93 28 chr11 19212262 19212476 -129570996 - MIR SINE MIR -33 229 2 193 298 35 0 chr11 19212513 19212570 -129570902 - MIR3 SINE MIR -49 159 101 1413 159 14 67 chr11 19212733 19213016 -129570456 + AluJo SINE Alu 1 268 -44 377 294 34 45 chr11 19213178 19213355 -129570117 - MIR SINE MIR -21 241 67 318 341 81 6 chr11 19214200 19214373 -129569099 - MIR SINE MIR -75 187 2 223 286 227 0 chr11 19214434 19214553 -129568919 - MIR SINE MIR -77 185 40 268 141 50 40 chr11 19216039 19216138 -129567334 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 336 240 62 10 chr11 19216153 19216249 -129567223 - L1MC4 LINE L1 -1333 6709 6609 271 361 23 8 chr11 19216275 19216408 -129567064 - L2 LINE L2 -219 3053 2919 229 302 19 66 chr11 19216581 19216619 -129566853 - L2 LINE L2 -536 2778 2740 1611 150 144 6 chr11 19216619 19216939 -129566533 - MLT1A1 LTR MaLR 0 365 2 229 302 19 66 chr11 19216939 19217006 -129566466 - L2 LINE L2 -574 2740 2678 2190 80 18 4 chr11 19220163 19220462 -129563010 + AluSg SINE Alu 1 303 0 252 233 67 0 chr11 19221538 19221598 -129561874 + MIR SINE MIR 82 145 -63 2350 99 0 3 chr11 19221619 19221921 -129561551 + AluSg SINE Alu 1 301 -9 1718 138 0 0 chr11 19221931 19222170 -129561302 + AluSx SINE Alu 1 239 -73 400 240 35 76 chr11 19222219 19222390 -129561082 + L1MC4a LINE L1 5807 5970 -1838 237 274 107 0 chr11 19222669 19222753 -129560719 - L3b LINE CR1 -150 1433 1341 327 217 181 108 chr11 19224041 19224207 -129559265 + MER5B DNA MER1_type 1 178 0 941 256 152 0 chr11 19224208 19224485 -129558987 - MER102b DNA MER1_type -21 320 2 359 307 0 24 chr11 19224528 19224655 -129558817 + MIR SINE MIR 124 247 -15 186 156 0 0 chr11 19226584 19226616 -129556856 - L2 LINE L2 -2 3270 3239 270 295 95 19 chr11 19226641 19226746 -129556726 + L2 LINE L2 3155 3267 -5 214 333 65 0 chr11 19226752 19226860 -129556612 - L2 LINE L2 -41 3231 3117 449 204 83 89 chr11 19227843 19227890 -129555582 + MIR SINE MIR 24 70 -192 2219 98 0 71 chr11 19227890 19228215 -129555257 + AluSx SINE Alu 1 302 -10 449 204 83 89 chr11 19228215 19228324 -129555148 + MIR SINE MIR 70 179 -83 372 323 15 8 chr11 19228876 19229006 -129554466 + MIR3 SINE MIR 46 176 -32 870 186 95 59 chr11 19229628 19229660 -129553812 + MIR SINE MIR 4 33 -229 1214 190 124 29 chr11 19229660 19229934 -129553538 + AluSg SINE Alu 1 300 -10 870 186 95 59 chr11 19229934 19230122 -129553350 + MIR SINE MIR 33 232 -30 201 356 153 17 chr11 19230695 19230813 -129552659 - L2 LINE L2 -6 3266 3133 235 301 39 39 chr11 19231251 19231354 -129552118 - L2 LINE L2 -285 2987 2885 * 440 223 14 72 chr11 19231335 19231474 -129551998 - MIR3 SINE MIR -20 188 58 5151 226 5 11 chr11 19331623 19332960 -129450512 - L1 LINE L1 -1909 4237 2909 222 300 29 0 chr11 19333196 19333266 -129450206 + L2 LINE L2 3242 3313 0 264 366 22 0 chr11 19333887 19334021 -129449451 - MIR SINE MIR -63 199 63 246 341 12 0 chr11 19334613 19334698 -129448774 - MIR3 SINE MIR -38 170 85 3549 93 17 0 chr11 19334978 19335564 -129447908 + L1PB1 LINE L1 5197 5791 -360 344 132 29 0 chr11 19335569 19335637 -129447835 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 2718 83 3 0 chr11 19335652 19336014 -129447458 + L1PB1 LINE L1 5787 6149 -2 660 297 56 43 chr11 19337089 19337369 -129446103 - LTR33 LTR ERVL -21 500 210 2449 138 31 14 chr11 19337369 19337790 -129445682 + MSTA LTR MaLR 1 428 0 660 297 56 43 chr11 19337790 19337973 -129445499 - LTR33 LTR ERVL -311 210 31 919 284 9 24 chr11 19338258 19338596 -129444876 - MER2 DNA MER2_type 0 345 13 291 312 80 16 chr11 19340245 19340370 -129443102 - MIR SINE MIR -109 153 21 240 316 26 0 chr11 19340675 19340751 -129442721 + L2 LINE L2 3236 3313 0 369 299 108 6 chr11 19341372 19341529 -129441943 - MIR SINE MIR -75 187 15 246 296 25 25 chr11 19342018 19342099 -129441373 + L2 LINE L2 3179 3259 -54 239 311 48 19 chr11 19342107 19342215 -129441257 - MIR3 SINE MIR -37 171 58 391 289 32 32 chr11 19342409 19342596 -129440876 + MLT1J LTR MaLR 94 280 -231 1630 194 6 23 chr11 19342701 19343051 -129440421 + MER2 DNA MER2_type 1 344 0 991 316 52 10 chr11 19343324 19343809 -129439663 + LTR33 LTR ERVL 7 511 -10 7389 36 6 0 chr11 19344753 19346261 -129437211 + L1PA4 LINE L1 4641 6153 -2 504 78 0 0 chr11 19347748 19347825 -129435647 - L1PB1 LINE L1 0 6151 6075 3916 88 29 2 chr11 19347907 19348489 -129434983 - L1PB1 LINE L1 -69 6082 5485 26 30 0 0 chr11 19349650 19349683 -129433789 + AT_rich Low_complexity Low_complexity 1 33 0 396 261 60 55 chr11 19349958 19350157 -129433315 - L2 LINE L2 -1481 1833 1634 197 319 50 67 chr11 19350680 19350705 -129432767 - L2 LINE L2 -9 3304 3280 1503 189 107 14 chr11 19350705 19351060 -129432412 + MLT1B LTR MaLR 1 388 -2 197 319 50 67 chr11 19351060 19351153 -129432319 - L2 LINE L2 -33 3280 3188 239 271 62 35 chr11 19351439 19351583 -129431889 - L2 LINE L2 -1348 1966 1819 640 299 81 41 chr11 19352309 19352674 -129430798 + L1MC4a LINE L1 5302 5651 -2157 228 35 0 0 chr11 19352674 19352703 -129430769 + (TA)n Simple_repeat Simple_repeat 2 30 0 640 299 81 41 chr11 19352703 19352852 -129430620 + L1MC4a LINE L1 5651 5844 -1964 1806 186 3 0 chr11 19352852 19353163 -129430309 + AluJo SINE Alu 1 312 0 640 299 81 41 chr11 19353163 19353228 -129430244 + L1MC4a LINE L1 5844 5905 -1903 473 32 16 0 chr11 19353244 19353307 -129430165 + (TA)n Simple_repeat Simple_repeat 1 64 0 53 40 0 0 chr11 19353472 19353546 -129429926 + AT_rich Low_complexity Low_complexity 1 74 0 1031 287 123 38 chr11 19353655 19354320 -129429152 - L2 LINE L2 -1469 1845 1124 2672 242 48 42 chr11 19354323 19355337 -129428135 + L1MD2 LINE L1 5325 6344 -15 307 274 48 0 chr11 19355339 19355423 -129428049 - L2 LINE L2 -2577 737 650 213 39 0 0 chr11 19357494 19357520 -129425952 + (TGAG)n Simple_repeat Simple_repeat 2 27 0 4773 75 11 5 chr11 19357817 19358509 -129424963 - L1PA8 LINE L1 -6 6166 5437 * 5329 106 13 1 chr11 19358502 19359383 -129424089 + L1P LINE L1 4541 5429 -702 183 220 140 0 chr11 19359856 19359906 -129423566 + L2 LINE L2 3216 3272 0 1156 247 23 3 chr11 19361229 19361581 -129421891 - L1MB4 LINE L1 -1 6179 5821 349 289 114 30 chr11 19363616 19363782 -129419690 - MIR SINE MIR -62 200 21 219 314 29 0 chr11 19364102 19364172 -129419300 + L2 LINE L2 3242 3313 0 237 395 12 12 chr11 19364943 19365029 -129418443 + L2 LINE L2 3134 3219 -53 232 367 70 0 chr11 19365036 19365194 -129418278 - MIR3 SINE MIR -37 171 3 331 293 102 59 chr11 19365271 19365527 -129417945 + MLT1J LTR MaLR 7 273 -238 1448 216 6 29 chr11 19365641 19365992 -129417480 + MER2 DNA MER2_type 1 343 -1 889 312 78 19 chr11 19366283 19366745 -129416727 + LTR33 LTR ERVL 31 519 -2 28880 119 13 53 chr11 19367561 19373629 -129409843 - L1PA7 LINE L1 -327 5827 12 20239 106 17 29 chr11 19373642 19375756 -129407716 + L1PA8 LINE L1 1862 3999 -2173 5477 150 27 18 chr11 19375756 19376716 -129406756 + LTR5 LTR ERVK 1 969 0 20239 106 17 29 chr11 19376716 19378051 -129405421 + L1PA8 LINE L1 3999 5268 -904 2292 109 0 7 chr11 19378051 19378354 -129405118 - AluSx SINE Alu -11 301 1 20239 106 17 29 chr11 19378354 19379243 -129404229 + L1PA8 LINE L1 5268 6166 -6 1470 225 42 98 chr11 19379236 19379943 -129403529 + L1MD2 LINE L1 5679 6346 -13 * 248 242 22 33 chr11 19379945 19380036 -129403436 - L2 LINE L2 -2577 737 648 21 0 0 0 chr11 19381063 19381084 -129402388 + AT_rich Low_complexity Low_complexity 1 21 0 2403 70 0 0 chr11 19382027 19382311 -129401161 - AluY SINE Alu -26 285 2 205 275 156 46 chr11 19382503 19382612 -129400860 + L2 LINE L2 3139 3259 -13 242 328 0 15 chr11 19383850 19383917 -129399555 - L2 LINE L2 -86 3186 3121 1301 248 17 0 chr11 19384711 19385062 -129398410 - L1MB4 LINE L1 0 6180 5824 199 359 57 0 chr11 19387092 19387198 -129396274 - MIR SINE MIR -62 200 89 194 286 43 14 chr11 19387585 19387655 -129395817 + L2 LINE L2 3242 3313 0 238 301 49 8 chr11 19388250 19388373 -129395099 - MIR SINE MIR -37 225 98 238 357 70 19 chr11 19389010 19389167 -129394305 - MIR3 SINE MIR -37 171 7 368 309 127 45 chr11 19389227 19389541 -129393931 + MLT1J LTR MaLR 4 343 -168 1237 264 9 23 chr11 19389596 19389944 -129393528 + MER2 DNA MER2_type 2 344 0 970 289 65 40 chr11 19390233 19390418 -129393054 + LTR33 LTR ERVL 31 210 -311 2707 143 29 7 chr11 19390418 19390837 -129392635 - MSTA LTR MaLR 0 428 1 970 289 65 40 chr11 19390837 19391128 -129392344 + LTR33 LTR ERVL 210 519 -2 1002 169 0 6 chr11 19391812 19391978 -129391494 + Tigger1 DNA MER2_type 1913 2077 -341 212 57 0 29 chr11 19391986 19392021 -129391451 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 7711 24 6 4 chr11 19392021 19393186 -129390286 - L1PA3 LINE L1 -24 6131 4965 1365 212 72 0 chr11 19393186 19393493 -129389979 + Tigger1 DNA MER2_type 2089 2417 -1 1733 180 0 0 chr11 19393849 19394138 -129389334 + AluJb SINE Alu 24 312 0 195 129 0 0 chr11 19394142 19394173 -129389299 + (A)n Simple_repeat Simple_repeat 1 31 0 1391 183 95 0 chr11 19394224 19394487 -129388985 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr11 19394487 19394512 -129388960 + AT_rich Low_complexity Low_complexity 1 25 0 1024 289 88 24 chr11 19394588 19395176 -129388296 + L1MC4a LINE L1 5286 5911 -1897 1051 301 103 38 chr11 19395424 19396091 -129387381 - L2 LINE L2 -1482 1832 1122 1018 274 72 3 chr11 19396091 19396438 -129387034 + L1MD2 LINE L1 5324 5694 -665 * 16233 160 12 110 chr11 19396435 19399078 -129384394 + L1PA8 LINE L1 2 2122 -4024 181 0 33 33 chr11 19399078 19399108 -129384364 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 16233 160 12 110 chr11 19399108 19400475 -129382997 + L1PA8 LINE L1 2122 3621 -2525 12641 112 7 3 chr11 19400575 19403139 -129380333 + L1PA8 LINE L1 3595 6165 -7 1761 223 52 100 chr11 19403141 19403849 -129379623 + L1MD2 LINE L1 5685 6358 -1 241 250 26 26 chr11 19403869 19403945 -129379527 - L2 LINE L2 -2605 709 634 199 313 139 17 chr11 19406068 19406183 -129377289 + L2 LINE L2 3140 3268 -4 1028 219 48 10 chr11 19408260 19408552 -129374920 - L1MB4 LINE L1 0 6180 5878 180 372 108 0 chr11 19411628 19411776 -129371696 - MIR SINE MIR -63 199 36 232 414 23 0 chr11 19412275 19412362 -129371110 + L2 LINE L2 3132 3220 -52 215 337 12 0 chr11 19412368 19412454 -129371018 - MIR3 SINE MIR -37 171 85 252 326 82 0 chr11 19412679 19412777 -129370695 + MLT1J2 LTR MaLR 67 172 -278 1203 251 6 26 chr11 19413017 19413328 -129370144 + MER2 DNA MER2_type 41 345 0 898 293 68 41 chr11 19413617 19413801 -129369671 + LTR33 LTR ERVL 31 208 -313 2651 142 39 7 chr11 19413801 19414216 -129369256 - MSTA LTR MaLR 0 428 1 898 293 68 41 chr11 19414216 19414499 -129368973 + LTR33 LTR ERVL 208 511 -10 2497 184 41 6 chr11 19415200 19415688 -129367784 + Tigger1 DNA MER2_type 1913 2417 -1 1596 202 10 0 chr11 19415969 19416261 -129367211 + AluJb SINE Alu 1 295 -17 1905 158 3 0 chr11 19416315 19416606 -129366866 + AluSx SINE Alu 1 292 -20 26 0 0 0 chr11 19416610 19416636 -129366836 + AT_rich Low_complexity Low_complexity 1 26 0 1089 289 84 15 chr11 19416766 19417299 -129366173 + L1MC4a LINE L1 5342 5911 -1897 27 29 0 0 chr11 19417299 19417333 -129366139 + AT_rich Low_complexity Low_complexity 1 34 0 1094 305 113 21 chr11 19417550 19418203 -129365269 - L2 LINE L2 -1480 1834 1122 1018 274 72 3 chr11 19418203 19418550 -129364922 + L1MD2 LINE L1 5324 5694 -665 * 27106 184 45 20 chr11 19418547 19423896 -129359576 + L1P3 LINE L1 2 5487 -667 1170 72 0 0 chr11 19423896 19424034 -129359438 + AluY SINE Alu 1 138 -173 5273 97 0 0 chr11 19424048 19424738 -129358734 + L1PA8 LINE L1 5476 6165 -7 1525 230 46 104 chr11 19424738 19425444 -129358028 + L1MD2 LINE L1 5685 6349 -10 371 270 10 10 chr11 19425448 19425548 -129357924 - L2 LINE L2 -2581 733 634 233 342 120 17 chr11 19427734 19427851 -129355621 + L2 LINE L2 3139 3267 -5 216 328 131 8 chr11 19429022 19429144 -129354328 - L2 LINE L2 -15 3257 3121 1330 224 29 6 chr11 19429958 19430306 -129353166 - L1MB4 LINE L1 0 6180 5825 181 343 67 0 chr11 19432312 19432417 -129351055 - MIR SINE MIR -62 200 89 222 300 29 0 chr11 19432805 19432875 -129350597 + L2 LINE L2 3242 3313 0 268 374 11 11 chr11 19434139 19434230 -129349242 + L2 LINE L2 3129 3219 -53 219 333 42 60 chr11 19434237 19434405 -129349067 - MIR3 SINE MIR -37 171 7 243 348 34 28 chr11 19434533 19434711 -129348761 + MLT1J LTR MaLR 94 272 -239 745 279 7 35 chr11 19434963 19435253 -129348219 + MER2 DNA MER2_type 63 344 -1 731 309 58 32 chr11 19435549 19435728 -129347744 + LTR33 LTR ERVL 37 210 -311 2245 169 26 9 chr11 19435728 19436148 -129347324 - MSTA LTR MaLR -1 427 1 731 309 58 32 chr11 19436148 19436431 -129347041 + LTR33 LTR ERVL 210 511 -10 2399 185 39 2 chr11 19437135 19437622 -129345850 + Tigger1 DNA MER2_type 1913 2417 -1 21 0 0 0 chr11 19437875 19437896 -129345576 + AT_rich Low_complexity Low_complexity 1 21 0 1415 196 0 0 chr11 19437915 19438155 -129345317 + AluJb SINE Alu 11 250 -62 1960 140 3 7 chr11 19438304 19438597 -129344875 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr11 19438597 19438627 -129344845 + AT_rich Low_complexity Low_complexity 1 30 0 888 286 83 22 chr11 19438714 19439294 -129344178 + L1MC4a LINE L1 5297 5911 -1897 27 62 0 0 chr11 19439296 19439344 -129344128 + AT_rich Low_complexity Low_complexity 1 48 0 1169 306 118 16 chr11 19439555 19440193 -129343279 - L2 LINE L2 -1490 1824 1122 2224 234 70 73 chr11 19440193 19441219 -129342253 + L1MD2 LINE L1 5324 6346 -13 263 320 19 10 chr11 19441221 19441324 -129342148 - L2 LINE L2 -2577 737 634 207 0 0 0 chr11 19441889 19441912 -129341560 + (TTA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 19441912 19441933 -129341539 + AT_rich Low_complexity Low_complexity 1 21 0 236 275 156 46 chr11 19443525 19443634 -129339838 + L2 LINE L2 3139 3259 -13 184 345 133 26 chr11 19444816 19444929 -129338543 - L2 LINE L2 -15 3257 3133 971 238 41 6 chr11 19445749 19446093 -129337379 - L1MB4 LINE L1 0 6180 5825 2236 215 16 2 chr11 19447786 19448294 -129335178 - L1 LINE L1 -3237 2909 2395 1670 121 15 134 chr11 19448303 19448692 -129334780 + LTR3b LTR ERVK 158 500 0 361 225 139 96 chr11 19449014 19449223 -129334249 + HERVK3 LTR ERVK 55 272 -6971 265 236 0 79 chr11 19449287 19449376 -129334096 + HERVK3 LTR ERVK 586 667 -6576 3909 221 68 8 chr11 19449380 19450312 -129333160 + HERVK3 LTR ERVK 1321 2308 -4935 2443 129 9 46 chr11 19450313 19450833 -129332639 + HERVK3 LTR ERVK 2996 5572 -373 1276 153 9 5 chr11 19450833 19451049 -129332423 + PRIMA41-int LTR ERV1 7540 7756 0 * 1355 87 11 0 chr11 19450866 19451051 -129332421 + HERVK3 LTR ERVK 5575 5761 -184 338 168 0 19 chr11 19451053 19451124 -129332348 + MER41C LTR ERV1 5 61 -493 436 0 0 0 chr11 19451124 19451174 -129332298 + HERVK14 LTR ERVK 5835 5884 -61 1630 153 52 9 chr11 19451196 19451522 -129331950 + LTR3b LTR ERVK 158 497 -3 564 90 0 0 chr11 19451522 19451600 -129331872 + LTR3b LTR ERVK 423 500 0 319 131 54 161 chr11 19451612 19451742 -129331730 - L1 LINE L1 -3756 2390 2275 * 13004 114 62 22 chr11 19451741 19454071 -129329401 - L1PBa LINE L1 -3999 2864 443 1686 135 74 37 chr11 19454084 19454409 -129329063 - LTR10A LTR ERV1 -61 548 212 24 0 0 0 chr11 19455076 19455100 -129328372 + AT_rich Low_complexity Low_complexity 1 24 0 1580 109 8 0 chr11 19455103 19455351 -129328121 - L1MA1 LINE L1 -4 7717 7468 31096 70 15 8 chr11 19455353 19460624 -129322848 - L1PA6 LINE L1 -4 6150 847 618 102 0 0 chr11 19460622 19460710 -129322762 - L1PA6 LINE L1 -6048 98 11 * 4946 113 30 19 chr11 19460720 19461744 -129321728 - L1MA1 LINE L1 -229 7492 6458 * 17121 177 65 12 chr11 19461711 19467369 -129316103 - L1MA1 LINE L1 -1588 5977 13 9963 157 50 4 chr11 19467371 19469246 -129314226 + Tigger1 DNA MER2_type 4 1963 -455 1627 96 50 27 chr11 19469259 19469474 -129313998 - L1PA14 LINE L1 -4 6157 5933 8492 64 5 1 chr11 19469474 19470541 -129312931 - MER11C LTR ERVK 0 1071 1 1627 96 50 27 chr11 19470541 19470586 -129312886 - L1PA14 LINE L1 -228 5933 5891 1811 133 77 9 chr11 19470586 19470904 -129312568 + THE1C LTR MaLR 1 340 -35 1426 138 40 28 chr11 19470904 19471157 -129312315 - THE1B LTR MaLR 0 364 109 1215 149 37 97 chr11 19471147 19471468 -129312004 + THE1C LTR MaLR 74 375 0 * 9809 118 24 37 chr11 19471471 19473069 -129310403 + THE1C-int LTR MaLR 4 1580 0 1626 148 50 78 chr11 19473071 19473455 -129310017 + THE1C LTR MaLR 3 375 0 646 214 0 0 chr11 19473470 19473596 -129309876 + Tigger1 DNA MER2_type 1950 2075 -343 1838 159 11 0 chr11 19473596 19473941 -129309531 - AluJb SINE Alu 0 348 1 1357 154 16 4 chr11 19473942 19474188 -129309284 + Tigger1 DNA MER2_type 2064 2312 -106 13618 195 32 14 chr11 19474206 19479008 -129304464 - L1PB1 LINE L1 -8 6859 1760 2301 112 0 0 chr11 19479008 19479303 -129304169 - AluSc SINE Alu -14 295 1 13618 195 32 14 chr11 19479303 19480319 -129303153 - L1PB1 LINE L1 -5107 1760 765 1166 258 53 43 chr11 19480317 19480848 -129302624 - L1PB1 LINE L1 -6312 551 16 * 875 252 22 6 chr11 19480849 19481171 -129302301 - L1M4 LINE L1 -842 5304 4978 * 3182 228 60 45 chr11 19481166 19481577 -129301895 - L1M4 LINE L1 -2684 3462 3059 840 93 16 0 chr11 19481577 19481706 -129301766 - L1PA13 LINE L1 -5 6158 6028 3182 228 60 45 chr11 19481706 19482525 -129300947 - L1M4 LINE L1 -3087 3059 2213 499 306 35 26 chr11 19482628 19482857 -129300615 - MIR SINE MIR -28 234 4 198 369 0 0 chr11 19483345 19483410 -129300062 - MIR SINE MIR -101 107 43 496 277 19 52 chr11 19484215 19484370 -129299102 + MIR3 SINE MIR 48 197 -11 282 287 58 0 chr11 19485047 19485134 -129298338 + L3 LINE CR1 1402 1493 -84 253 299 165 0 chr11 19485171 19485268 -129298204 - L2 LINE L2 -21 3251 3139 22 35 0 0 chr11 19485343 19485372 -129298100 + AT_rich Low_complexity Low_complexity 1 29 0 259 348 68 0 chr11 19485654 19485772 -129297700 - MIR3 SINE MIR -29 179 54 511 234 16 35 chr11 19486348 19486528 -129296944 + MLT1I LTR MaLR 276 407 -2 324 333 69 23 chr11 19486841 19487015 -129296457 - MER5A DNA MER1_type 0 189 8 1229 285 31 29 chr11 19487098 19487547 -129295925 - LTR16A1 LTR ERVL -2 455 6 2415 186 86 49 chr11 19487631 19488224 -129295248 - L1MB7 LINE L1 -58 6126 5512 917 322 10 3 chr11 19488228 19488517 -129294955 - HERV16 LTR ERVL -2473 3181 2891 1333 314 74 35 chr11 19488527 19489294 -129294178 - HERV16 LTR ERVL -2640 2356 1781 392 218 0 0 chr11 19489324 19489411 -129294061 - L1MC4 LINE L1 0 8042 7956 * 1967 229 98 24 chr11 19489403 19489935 -129293537 - L1MC4 LINE L1 -306 7736 7166 475 281 14 13 chr11 19490368 19490528 -129292944 - L1M4 LINE L1 -5722 924 543 531 252 95 21 chr11 19490814 19491056 -129292416 - L1M4 LINE L1 -6282 260 1 662 143 45 30 chr11 19491107 19491240 -129292232 - L1MA7 LINE L1 -220 6071 5937 937 292 44 49 chr11 19491373 19491804 -129291668 + LTR33 LTR ERVL 93 521 0 2099 161 138 5 chr11 19492724 19493102 -129290370 - MSTA LTR MaLR 0 428 1 904 336 90 4 chr11 19493304 19493792 -129289680 - L2 LINE L2 -2133 1181 652 13687 88 1 0 chr11 19494003 19495836 -129287636 - L1P LINE L1 -925 5221 3388 2709 20 43 0 chr11 19496249 19496554 -129286918 - AluYb8 SINE Alu 0 318 1 258 289 174 0 chr11 19496589 19496710 -129286762 - MIR3 SINE MIR -23 185 44 199 319 28 14 chr11 19496989 19497061 -129286411 - L2 LINE L2 -219 3053 2981 1352 69 126 0 chr11 19497262 19497409 -129286063 + MER107 DNA MER1_type 1 175 -22 262 67 44 0 chr11 19497409 19497454 -129286018 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1352 69 126 0 chr11 19497454 19497481 -129285991 + MER107 DNA MER1_type 175 197 0 288 295 11 21 chr11 19497647 19497742 -129285730 - MIR SINE MIR -50 212 119 1744 218 71 52 chr11 19498043 19498539 -129284933 + MLT1D LTR MaLR 1 505 0 2494 160 67 0 chr11 19498615 19499016 -129284456 - MSTA LTR MaLR 0 428 1 253 182 11 171 chr11 19499884 19499972 -129283500 - MIR3 SINE MIR -24 184 111 432 37 0 0 chr11 19500075 19500129 -129283343 + (CA)n Simple_repeat Simple_repeat 2 55 0 23 86 0 0 chr11 19500437 19500495 -129282977 + AT_rich Low_complexity Low_complexity 1 58 0 2599 168 10 57 chr11 19500926 19501207 -129282265 + MER54A LTR ERVL 1 249 -652 2352 106 0 0 chr11 19501207 19501509 -129281963 - AluSx SINE Alu -10 302 1 2599 168 10 57 chr11 19501509 19501734 -129281738 + MER54A LTR ERVL 249 483 -418 1700 160 50 6 chr11 19501735 19502053 -129281419 + L1MA4 LINE L1 5953 6284 -16 2105 137 28 0 chr11 19503139 19503460 -129280012 - L1PB1 LINE L1 -2 6149 5820 4404 242 67 35 chr11 19503769 19504322 -129279150 + L1MC2 LINE L1 888 1422 -5004 7768 45 6 0 chr11 19504322 19505592 -129277880 - L1PA5 LINE L1 -3 6151 4879 4404 242 67 35 chr11 19505592 19507109 -129276363 + L1MC2 LINE L1 1422 3233 -3193 2264 122 0 0 chr11 19507109 19507420 -129276052 + AluSx SINE Alu 1 311 -1 4404 242 67 35 chr11 19507420 19508182 -129275290 + L1MC2 LINE L1 3233 3969 -2457 934 248 16 16 chr11 19508224 19508478 -129274994 + MER74B LTR ERVL 59 312 -310 3792 212 14 14 chr11 19508479 19509420 -129274052 + L1MC2 LINE L1 5427 6364 -260 8136 104 4 20 chr11 19509524 19510778 -129272694 - L1MEc LINE L1 -2856 3359 2169 342 309 77 50 chr11 19510746 19511164 -129272308 - L1MEd LINE L1 -5244 875 447 * 211 62 0 62 chr11 19511166 19511214 -129272258 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 214 299 52 26 chr11 19511621 19511698 -129271774 + MIR SINE MIR 66 144 -118 6054 150 12 32 chr11 19511908 19513269 -129270203 - L1MA5 LINE L1 -38 7283 5933 * 6596 179 26 15 chr11 19513266 19514631 -129268841 - L1MA5 LINE L1 -4710 2458 1056 253 310 52 0 chr11 19514652 19514768 -129268704 + MIR SINE MIR 75 196 -66 365 342 77 15 chr11 19514788 19514984 -129268488 + MIR SINE MIR 42 249 -13 796 186 41 0 chr11 19515505 19515650 -129267822 - FRAM SINE Alu -1 175 25 189 239 68 68 chr11 19515802 19515890 -129267582 + MIR SINE MIR 56 143 -119 195 204 0 0 chr11 19517126 19517170 -129266302 + L2 LINE L2 3182 3225 -88 221 279 0 44 chr11 19517191 19517259 -129266213 - L2 LINE L2 0 3313 3249 241 318 32 48 chr11 19517557 19517683 -129265789 + MIR SINE MIR 25 148 -114 2562 200 31 82 chr11 19517684 19518332 -129265140 + LTR9 LTR ERV1 1 793 -1 894 181 42 0 chr11 19518584 19518750 -129264722 - MIR SINE MIR -21 241 69 2405 97 0 0 chr11 19518770 19519070 -129264402 + AluSx SINE Alu 1 300 -12 809 301 96 22 chr11 19519850 19520216 -129263256 - L2 LINE L2 0 3313 2921 533 256 181 30 chr11 19520277 19520547 -129262925 - L2 LINE L2 -541 2773 2463 432 281 114 62 chr11 19520607 19521009 -129262463 + L2 LINE L2 2815 3237 -76 766 288 37 103 chr11 19522369 19522997 -129260475 - L1MEd LINE L1 -5249 870 285 468 323 95 13 chr11 19523162 19523320 -129260152 - MIR SINE MIR -78 184 14 207 320 134 17 chr11 19523367 19523539 -129259933 + L3 LINE CR1 1264 1455 -122 253 319 9 71 chr11 19524241 19524354 -129259118 - MIR SINE MIR -65 143 38 299 280 191 18 chr11 19524619 19524787 -129258685 + MIR SINE MIR 60 256 -6 519 226 187 22 chr11 19524855 19525065 -129258407 - MIR SINE MIR -9 253 17 477 319 38 5 chr11 19525103 19525288 -129258184 + MIR3 SINE MIR 7 197 -11 1137 243 6 54 chr11 19525705 19526022 -129257450 + AluSx SINE Alu 1 302 0 464 330 46 27 chr11 19526039 19526300 -129257172 + L1M3d LINE L1 6 271 -5620 427 324 88 49 chr11 19526275 19526479 -129256993 + L1M3de LINE L1 572 783 -5870 * 544 316 41 10 chr11 19526489 19526685 -129256787 + L1M3de LINE L1 814 1015 -5638 448 225 11 11 chr11 19526705 19526794 -129256678 + L1MA7 LINE L1 394 482 -6287 295 287 53 21 chr11 19526797 19526891 -129256581 + L1MA7 LINE L1 1035 1131 -5638 349 257 30 30 chr11 19526898 19526999 -129256473 + L1M4c LINE L1 382 482 -6287 432 280 0 20 chr11 19527008 19527108 -129256364 + L1M4c LINE L1 385 482 -6287 4359 229 26 24 chr11 19527146 19528142 -129255330 + L1M4c LINE L1 1076 2073 -4696 979 254 8 12 chr11 19528137 19528385 -129255087 + L1MA7 LINE L1 2350 2596 -4253 * 24504 162 28 26 chr11 19528386 19532349 -129251123 + L1PA10 LINE L1 1 4054 -2429 216 0 0 0 chr11 19532349 19532373 -129251099 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 24504 162 28 26 chr11 19532373 19534810 -129248662 + L1PA10 LINE L1 4054 6483 0 382 278 32 56 chr11 19534863 19535079 -129248393 + L1M4c LINE L1 2260 2470 -4378 715 225 26 45 chr11 19535091 19535403 -129248069 + L1M4c LINE L1 2522 2841 -4007 3081 228 68 10 chr11 19535413 19536323 -129247149 + L1M4c LINE L1 3146 4108 -2740 1427 103 0 0 chr11 19536323 19536508 -129246964 + AluSp SINE Alu 128 312 -1 9782 161 27 20 chr11 19536508 19538299 -129245173 + L1MA7 LINE L1 4097 5873 -1141 1148 149 0 61 chr11 19538299 19538527 -129244945 + L1MA6 LINE L1 6074 6287 -13 9782 161 27 20 chr11 19538527 19539443 -129244029 + L1MA7 LINE L1 5873 6780 -234 6502 103 17 0 chr11 19539443 19541003 -129242469 + L1PA14 LINE L1 4577 6159 -2 2696 112 2 25 chr11 19541003 19541397 -129242075 + L1PA14 LINE L1 5770 6161 0 9782 161 27 20 chr11 19541397 19541423 -129242049 + L1MA7 LINE L1 6780 6804 -210 1785 154 0 31 chr11 19541423 19541716 -129241756 + AluSx SINE Alu 7 290 -22 9782 161 27 20 chr11 19541716 19541731 -129241741 + L1MA7 LINE L1 6804 6817 -197 2116 73 8 0 chr11 19541731 19541992 -129241480 - L1PA10 LINE L1 -9 6159 5897 9782 161 27 20 chr11 19541992 19542137 -129241335 + L1MA7 LINE L1 6817 6981 -33 3479 211 47 18 chr11 19542155 19543099 -129240373 + L1ME2 LINE L1 5191 6163 -1 352 329 70 13 chr11 19545142 19545300 -129238172 - MIR SINE MIR -76 186 20 278 352 56 0 chr11 19545650 19545758 -129237714 + L2 LINE L2 3146 3259 -13 180 97 0 0 chr11 19545769 19545800 -129237672 + (CATG)n Simple_repeat Simple_repeat 1 31 0 681 282 31 5 chr11 19546413 19546608 -129236864 - MIR SINE MIR -48 214 15 2458 56 0 20 chr11 19547096 19547398 -129236074 - AluY SINE Alu -15 296 1 188 372 74 14 chr11 19547509 19547657 -129235815 - MIR3 SINE MIR -37 171 15 252 269 179 14 chr11 19547917 19548062 -129235410 + MLT1J LTR MaLR 227 395 -116 1073 234 79 89 chr11 19548536 19548929 -129234543 + LTR33 LTR ERVL 131 519 -2 249 302 17 35 chr11 19549886 19550002 -129233470 - HAL1b LINE L1 -452 896 783 183 80 0 0 chr11 19550117 19550142 -129233330 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 286 316 105 0 chr11 19550146 19550241 -129233231 - L2 LINE L2 -18 3295 3191 403 290 104 23 chr11 19550579 19550981 -129232491 - L1MEc LINE L1 -797 1693 1202 482 260 73 0 chr11 19551026 19551176 -129232296 + MIR SINE MIR 81 241 -21 728 219 118 32 chr11 19551178 19551457 -129232015 - L1MEc LINE L1 -4924 1195 893 320 291 71 31 chr11 19551818 19551945 -129231527 + L2 LINE L2 3140 3271 -1 1119 278 86 27 chr11 19552833 19553315 -129230157 + MLT1K LTR MaLR 16 586 -2 535 191 24 6 chr11 19553394 19553562 -129229910 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 367 313 80 17 chr11 19554069 19554245 -129229227 - MIR3 SINE MIR -20 188 2 2514 52 0 10 chr11 19554351 19554656 -129228816 - AluY SINE Alu -1 310 9 3040 151 17 4 chr11 19555026 19555497 -129227975 - L1PA16 LINE L1 -1 6165 5689 1690 164 11 4 chr11 19555731 19556012 -129227460 - AluSx SINE Alu -29 283 1 315 261 165 0 chr11 19556219 19556334 -129227138 - L2 LINE L2 0 3313 3180 293 326 35 0 chr11 19556388 19556532 -129226940 - MIR3 SINE MIR 0 208 60 222 333 152 10 chr11 19556801 19556900 -129226572 - MIR SINE MIR -78 130 18 549 260 63 8 chr11 19557053 19557180 -129226292 + MER45A DNA AcHobo 1 134 -44 4292 133 29 2 chr11 19557395 19558013 -129225459 - MER41B LTR ERV1 0 635 1 2848 10 0 0 chr11 19558821 19559127 -129224345 + AluY SINE Alu 1 306 -5 235 280 121 92 chr11 19559129 19559475 -129223997 + L3 LINE CR1 1011 1366 -211 617 301 65 68 chr11 19559702 19560403 -129223069 + L2 LINE L2 2560 3270 -2 3057 187 93 73 chr11 19560853 19561497 -129221975 + L1MD2 LINE L1 4965 5594 -648 504 41 82 0 chr11 19561497 19561570 -129221902 - MADE1 DNA Mariner -1 79 1 3057 187 93 73 chr11 19561570 19562222 -129221250 + L1MD2 LINE L1 5594 6234 -8 257 243 135 0 chr11 19562293 19562367 -129221105 - L2 LINE L2 -1 3312 3229 307 258 21 75 chr11 19562400 19562493 -129220979 - MIR SINE MIR -147 115 28 775 211 0 0 chr11 19562725 19562858 -129220614 + FLAM_A SINE Alu 1 133 0 23 33 0 0 chr11 19562906 19562936 -129220536 + AT_rich Low_complexity Low_complexity 1 30 0 364 228 18 108 chr11 19564503 19564585 -129218887 - L1ME LINE L1 -439 5682 5621 2184 121 0 0 chr11 19564585 19564882 -129218590 + AluSx SINE Alu 2 298 -14 364 228 18 108 chr11 19564882 19564966 -129218506 - L1ME LINE L1 -500 5621 5531 390 275 22 29 chr11 19565204 19565342 -129218130 + MIR3 SINE MIR 4 140 -68 485 289 0 8 chr11 19566265 19566393 -129217079 + MLT1L LTR MaLR 114 240 -375 267 164 119 0 chr11 19566446 19566513 -129216959 + MLT1L LTR MaLR 405 479 -136 649 216 127 6 chr11 19567182 19567363 -129216109 + MIR SINE MIR 18 220 -42 629 299 74 22 chr11 19567579 19567810 -129215662 - MIR SINE MIR 0 262 20 1569 174 43 0 chr11 19567811 19568116 -129215356 - AluYb8 SINE Alu 0 318 1 1590 11 6 0 chr11 19568322 19568500 -129214972 - L1PA4 LINE L1 -220 5935 5757 446 288 139 0 chr11 19568811 19569002 -129214470 + MIR SINE MIR 33 249 -13 2443 48 3 35 chr11 19569006 19569319 -129214153 - AluY SINE Alu -8 303 1 216 250 47 16 chr11 19569509 19569573 -129213899 - L2 LINE L2 0 3272 3207 1369 166 0 0 chr11 19569689 19569900 -129213572 + AluSq SINE Alu 78 288 -25 1487 83 9 46 chr11 19570156 19570373 -129213099 - L1PA8A LINE L1 -1 6130 5922 342 0 0 0 chr11 19570387 19570425 -129213047 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6449 32 7 1 chr11 19570425 19571150 -129212322 - L1PA4 LINE L1 -16 6139 5411 3140 18 3 8 chr11 19571150 19571536 -129211936 + L1PA4 LINE L1 5020 5403 -743 1735 151 30 0 chr11 19571657 19571950 -129211522 + AluJb SINE Alu 10 310 0 247 222 0 19 chr11 19571960 19572014 -129211458 + MIR3 SINE MIR 155 207 -1 241 286 24 12 chr11 19572269 19572353 -129211119 + MIR3 SINE MIR 115 199 -9 314 183 14 0 chr11 19574615 19574686 -129208786 + GA-rich Low_complexity Low_complexity 2 73 0 240 309 45 18 chr11 19574845 19574955 -129208517 + MIR SINE MIR 100 212 -50 328 233 23 23 chr11 19575486 19575572 -129207900 - MIR SINE MIR -118 144 59 309 242 135 94 chr11 19576180 19576424 -129207048 - MIR SINE MIR -3 259 6 270 327 44 6 chr11 19576601 19576760 -129206712 - L3 LINE CR1 -107 1470 1306 550 239 97 23 chr11 19576852 19577028 -129206444 + MIR SINE MIR 20 208 -54 499 294 31 25 chr11 19577055 19577215 -129206257 + MIR SINE MIR 31 191 -71 884 168 0 11 chr11 19577554 19577733 -129205739 + GA-rich Low_complexity Low_complexity 3 179 0 507 33 0 0 chr11 19577733 19577794 -129205678 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 385 296 68 12 chr11 19577963 19578125 -129205347 - MIR SINE MIR -79 183 13 2150 101 14 0 chr11 19579041 19579342 -129204130 - AluSc SINE Alu 0 305 1 198 0 0 0 chr11 19579615 19579637 -129203835 + (CA)n Simple_repeat Simple_repeat 1 22 0 183 286 89 0 chr11 19580003 19580059 -129203413 + MIR3 SINE MIR 139 199 -9 267 314 18 136 chr11 19580098 19580487 -129202985 + L2 LINE L2 2912 3254 -18 213 39 0 0 chr11 19580492 19580518 -129202954 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1640 176 7 23 chr11 19580627 19580933 -129202539 - AluJo SINE Alu -11 301 1 1256 128 0 0 chr11 19581488 19581667 -129201805 - AluSg/x SINE Alu -7 303 125 1116 62 0 0 chr11 19581670 19581799 -129201673 + AluSq/x SINE Alu 1 129 -184 22 0 0 0 chr11 19581805 19581827 -129201645 + AT_rich Low_complexity Low_complexity 1 22 0 458 220 40 0 chr11 19582306 19582406 -129201066 + MER5A DNA MER1_type 9 112 -77 188 194 296 31 chr11 19582331 19582429 -129201043 - MER5A DNA MER1_type -23 166 43 * 252 261 75 53 chr11 19582550 19582710 -129200762 - MIR SINE MIR -58 204 49 549 129 12 0 chr11 19583074 19583159 -129200313 + MER5A DNA MER1_type 1 86 -103 450 307 40 3 chr11 19584081 19584243 -129199229 + MIR SINE MIR 19 183 -62 1156 148 16 40 chr11 19584733 19584983 -129198489 - Charlie5 DNA MER1_type 0 2620 2377 282 294 24 12 chr11 19585115 19585200 -129198272 + MIR SINE MIR 20 105 -103 207 0 0 0 chr11 19585214 19585237 -129198235 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 310 308 106 0 chr11 19585239 19585343 -129198129 - L2 LINE L2 -8 3264 3150 354 23 0 0 chr11 19586673 19586716 -129196756 + (CA)n Simple_repeat Simple_repeat 1 43 0 232 259 134 27 chr11 19588212 19588324 -129195148 + MIR3 SINE MIR 8 131 -77 849 187 6 22 chr11 19588743 19588925 -129194547 - MIR SINE MIR -5 257 79 2511 87 55 3 chr11 19591205 19591551 -129191921 - THE1B LTR MaLR 0 364 1 457 240 25 8 chr11 19591851 19591972 -129191500 - FLAM_C SINE Alu -20 123 1 227 245 0 0 chr11 19592141 19592194 -129191278 + MIR3 SINE MIR 151 203 -5 224 271 173 38 chr11 19592652 19592785 -129190687 - MIR3 SINE MIR -32 176 26 935 289 70 13 chr11 19593102 19593649 -129189823 - MLT2E LTR ERVL 0 628 1 1511 87 0 0 chr11 19594059 19594254 -129189218 - MER107 DNA MER1_type -2 195 1 314 288 12 12 chr11 19594610 19594773 -129188699 + (TA)n Simple_repeat Simple_repeat 1 163 0 2203 195 81 53 chr11 19596549 19597119 -129186353 - MLT1E LTR MaLR 0 593 8 203 196 0 20 chr11 19597835 19597886 -129185586 + MIR SINE MIR 76 125 -137 22 35 0 0 chr11 19598572 19598601 -129184871 + AT_rich Low_complexity Low_complexity 1 29 0 234 191 0 0 chr11 19598938 19598985 -129184487 + (TATG)n Simple_repeat Simple_repeat 1 47 0 487 269 35 0 chr11 19600783 19600928 -129182544 + MER103 DNA DNA 8 157 -9 1074 209 23 9 chr11 19601003 19601223 -129182249 + MER58A DNA MER1_type 2 224 0 1840 174 10 0 chr11 19602276 19602570 -129180902 + AluJb SINE Alu 1 297 -15 384 274 38 84 chr11 19605399 19605465 -129178007 - MIR SINE MIR -15 247 179 593 276 17 0 chr11 19605465 19605639 -129177833 + MER104 DNA MER2_type 4 180 0 384 274 38 84 chr11 19605639 19605809 -129177663 - MIR SINE MIR -83 179 22 381 286 71 26 chr11 19605853 19606007 -129177465 - MIR SINE MIR -82 180 20 364 272 39 73 chr11 19606376 19606582 -129176890 + L1MB5 LINE L1 5727 5925 -249 * 1762 70 4 4 chr11 19606410 19606639 -129176833 + L1PA10 LINE L1 5754 5982 -186 21 57 0 0 chr11 19606999 19607034 -129176438 + AT_rich Low_complexity Low_complexity 1 35 0 698 97 0 19 chr11 19608102 19608205 -129175267 - AluSq/x SINE Alu -173 139 39 353 67 0 0 chr11 19608249 19608294 -129175178 + (TG)n Simple_repeat Simple_repeat 2 46 0 2101 150 62 0 chr11 19608362 19608701 -129174771 - MLT1B LTR MaLR -24 366 7 436 295 134 49 chr11 19608707 19609459 -129174013 - HAL1 LINE L1 -872 1635 820 987 218 15 0 chr11 19609990 19610196 -129173276 - MER3 DNA MER1_type 0 209 1 277 282 0 0 chr11 19610546 19610617 -129172855 - MIR SINE MIR -67 195 125 336 276 155 0 chr11 19611631 19611747 -129171725 - MIR SINE MIR -108 154 21 517 348 53 42 chr11 19612205 19612808 -129170664 + L2 LINE L2 2603 3221 -51 383 292 67 34 chr11 19613071 19613221 -129170251 + MIR3 SINE MIR 25 183 -25 2456 38 31 3 chr11 19613221 19613513 -129169959 - AluY SINE Alu -11 300 1 383 292 67 34 chr11 19613513 19613540 -129169932 + MIR3 SINE MIR 183 208 0 2294 100 3 0 chr11 19614152 19614462 -129169010 + AluSp SINE Alu 1 311 -2 6601 150 8 12 chr11 19614463 19615628 -129167844 - L1MC1 LINE L1 -7 6326 5171 234 306 74 93 chr11 19616691 19616907 -129166565 + L3 LINE CR1 1169 1380 -197 1659 246 18 15 chr11 19617219 19617613 -129165859 - L1ME1 LINE L1 -53 6113 5719 856 194 95 47 chr11 19617596 19617647 -129165825 + L1MCa LINE L1 20 67 -6359 * 2111 105 13 13 chr11 19617647 19617951 -129165521 + AluY SINE Alu 1 304 -7 856 194 95 47 chr11 19617951 19618131 -129165341 + L1MCa LINE L1 67 262 -6164 3185 168 20 2 chr11 19618132 19618734 -129164738 + L1MCa LINE L1 783 1395 -5031 1716 204 48 70 chr11 19618742 19619097 -129164375 - L1ME1 LINE L1 -423 5743 5401 2176 111 10 0 chr11 19619097 19619394 -129164078 - AluSc SINE Alu -9 300 1 1716 204 48 70 chr11 19619394 19619539 -129163933 - L1ME1 LINE L1 -765 5401 5254 228 244 24 37 chr11 19619581 19619663 -129163809 - L1MDb LINE L1 -5515 894 814 1721 189 3 10 chr11 19619934 19620225 -129163247 - AluJb SINE Alu -23 289 1 195 250 192 29 chr11 19620226 19620330 -129163142 + MER5A DNA MER1_type 47 167 -22 282 29 0 0 chr11 19620784 19620819 -129162653 + (CAT)n Simple_repeat Simple_repeat 1 35 0 201 74 0 0 chr11 19621558 19621585 -129161887 + (GGA)n Simple_repeat Simple_repeat 1 27 0 410 221 117 3 chr11 19622020 19622149 -129161323 + MIR SINE MIR 22 154 -60 469 268 32 0 chr11 19622351 19622474 -129160998 - MIR SINE MIR -128 134 8 300 297 7 14 chr11 19624557 19624702 -129158770 + (CA)n Simple_repeat Simple_repeat 1 144 0 517 284 83 32 chr11 19625991 19626269 -129157203 - L3 LINE CR1 -20 1557 1266 410 279 142 6 chr11 19627318 19627501 -129155971 + MIR SINE MIR 3 210 -52 348 114 0 77 chr11 19627565 19627659 -129155813 + MLT2C1 LTR ERVL 1 77 -337 270 0 0 0 chr11 19629108 19629138 -129154334 + (A)n Simple_repeat Simple_repeat 1 30 0 267 31 0 0 chr11 19629283 19629315 -129154157 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr11 19629355 19629391 -129154081 + AT_rich Low_complexity Low_complexity 1 36 0 404 351 81 0 chr11 19630745 19630956 -129152516 + MIR SINE MIR 25 252 -10 307 328 44 10 chr11 19631194 19631398 -129152074 - L1ME4a LINE L1 -188 5933 5723 369 281 79 0 chr11 19631435 19631549 -129151923 - L2 LINE L2 0 3313 3191 1055 201 40 0 chr11 19631551 19631750 -129151722 + MER3 DNA MER1_type 1 207 -2 291 260 7 93 chr11 19631897 19632047 -129151425 - L1ME3 LINE L1 -2 6160 6024 208 191 0 0 chr11 19632066 19632108 -129151364 - L2 LINE L2 -261 3052 3011 272 326 41 0 chr11 19632933 19633031 -129150441 + L2 LINE L2 2567 2668 -646 204 40 0 0 chr11 19633659 19633684 -129149788 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 198 348 35 43 chr11 19633689 19633804 -129149668 - L2 LINE L2 -20 3252 3139 299 206 118 0 chr11 19634005 19634073 -129149399 + MLT1A2 LTR MaLR 1 76 -298 192 292 123 19 chr11 19634684 19634838 -129148634 + MIR SINE MIR 93 262 0 314 264 0 22 chr11 19636283 19636374 -129147098 + L2 LINE L2 3225 3313 0 2127 183 38 25 chr11 19637380 19637823 -129145649 + MER31B LTR ERV1 1 449 -17 206 234 43 0 chr11 19638133 19638180 -129145292 - L2 LINE L2 -90 3182 3134 312 284 104 30 chr11 19638365 19638499 -129144973 + MIR SINE MIR 88 231 -31 436 114 57 0 chr11 19639305 19639375 -129144097 + MLT2D LTR ERVL 155 228 -186 349 138 35 0 chr11 19639371 19639429 -129144043 + MLT2B1 LTR ERVL 461 520 0 * 365 176 0 12 chr11 19639765 19639850 -129143622 + CT-rich Low_complexity Low_complexity 1 84 0 972 313 98 23 chr11 19641026 19641797 -129141675 - L2 LINE L2 0 3313 2472 226 163 41 0 chr11 19642231 19642280 -129141192 - L2 LINE L2 0 3313 3263 483 201 115 63 chr11 19642849 19643023 -129140449 - MIR SINE MIR -13 249 67 213 281 73 21 chr11 19643167 19643263 -129140209 - L2 LINE L2 -38 3234 3134 208 210 0 65 chr11 19643495 19643557 -129139915 + MIR SINE MIR 86 143 -65 732 299 147 20 chr11 19644124 19644756 -129138716 - L2 LINE L2 -8 3305 2540 993 244 18 0 chr11 19645085 19645310 -129138162 - MIR SINE MIR -23 239 11 263 305 21 11 chr11 19645443 19645538 -129137934 + MIR SINE MIR 39 134 -128 393 136 0 0 chr11 19646131 19646197 -129137275 + (CA)n Simple_repeat Simple_repeat 1 66 0 189 0 0 0 chr11 19646365 19646386 -129137086 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 411 205 51 60 chr11 19646785 19646902 -129136570 - L2 LINE L2 -8 3305 3190 355 302 67 16 chr11 19647006 19647261 -129136211 + L1ME4a LINE L1 5681 5948 -173 286 240 120 30 chr11 19647286 19647386 -129136086 - L2 LINE L2 -5 3308 3200 27 49 0 0 chr11 19647484 19647525 -129135947 + AT_rich Low_complexity Low_complexity 1 41 0 488 237 155 104 chr11 19648381 19648735 -129134737 + LTR33A LTR ERVL 149 520 -3 2415 90 0 0 chr11 19649066 19649357 -129134115 + AluY SINE Alu 3 296 -15 189 0 0 0 chr11 19649357 19649378 -129134094 + (TA)n Simple_repeat Simple_repeat 2 22 0 1752 178 17 3 chr11 19650081 19650197 -129133275 + AluJo SINE Alu 2 115 -197 468 0 0 0 chr11 19650197 19650249 -129133223 + (CA)n Simple_repeat Simple_repeat 1 52 0 1752 178 17 3 chr11 19650249 19650424 -129133048 + AluJo SINE Alu 115 297 -15 567 271 102 25 chr11 19650447 19650683 -129132789 + MIR SINE MIR 1 254 -8 730 247 36 18 chr11 19652506 19652729 -129130743 + L2 LINE L2 2854 3080 -233 200 270 16 16 chr11 19653211 19653274 -129130198 + L2 LINE L2 3158 3220 -52 548 321 23 14 chr11 19653723 19653934 -129129538 - MIR SINE MIR -48 214 11 211 238 32 0 chr11 19654114 19654177 -129129295 + L2 LINE L2 2977 3041 -231 705 210 61 17 chr11 19654243 19654424 -129129048 + MER5A DNA MER1_type 1 189 0 313 353 83 6 chr11 19654728 19654884 -129128588 - L2 LINE L2 -1 3271 3104 591 265 66 20 chr11 19654884 19655080 -129128392 - MIR SINE MIR -56 206 2 280 258 15 0 chr11 19655191 19655257 -129128215 - L2 LINE L2 -217 3055 2989 312 247 14 0 chr11 19655567 19655640 -129127832 - L2 LINE L2 0 3313 3240 7475 177 16 4 chr11 19656162 19658362 -129125110 - L1PA13 LINE L1 0 6163 3924 480 274 153 14 chr11 19658396 19658679 -129124793 + L2 LINE L2 2748 3062 -251 284 152 167 0 chr11 19658825 19658891 -129124581 + MLT1J1 LTR MaLR 245 321 -125 379 296 45 28 chr11 19658987 19659274 -129124198 - L1M4 LINE L1 -816 5330 5039 935 312 32 12 chr11 19659450 19659956 -129123516 - L1M4 LINE L1 -1918 4228 3713 982 66 0 0 chr11 19660634 19660755 -129122717 + L1MA1 LINE L1 6175 6295 -7 458 324 81 34 chr11 19661702 19662353 -129121119 - HAL1 LINE L1 -743 1764 1083 2512 124 30 44 chr11 19663028 19663462 -129120010 - MSTA LTR MaLR 0 428 1 234 250 95 12 chr11 19663586 19663670 -129119802 + L2 LINE L2 3144 3234 -38 498 266 112 19 chr11 19664749 19664963 -129118509 - MIR SINE MIR -12 250 17 25 31 0 0 chr11 19666152 19666184 -129117288 + AT_rich Low_complexity Low_complexity 1 32 0 498 90 0 0 chr11 19666274 19666341 -129117131 + LTR29 LTR ERV1 490 556 -66 361 188 29 0 chr11 19666690 19666759 -129116713 + MIR SINE MIR 82 152 -56 375 199 321 8 chr11 19667648 19667779 -129115693 - MER5B DNA MER1_type -4 174 3 304 309 105 19 chr11 19667885 19668047 -129115425 - L2 LINE L2 -187 3085 2910 2338 4 0 0 chr11 19668166 19668413 -129115059 + AluYa5 SINE Alu 43 289 -22 344 232 11 0 chr11 19668971 19669066 -129114406 + L1ME4a LINE L1 5786 5881 -240 396 296 81 17 chr11 19669113 19669285 -129114187 - L2 LINE L2 -37 3276 3094 834 134 67 34 chr11 19669328 19669477 -129113995 - FRAM SINE Alu -12 154 1 342 288 123 5 chr11 19670260 19670459 -129113013 + MIR SINE MIR 1 229 -33 554 227 0 74 chr11 19671059 19671222 -129112250 - MER117 DNA MER1_type -27 170 20 1335 191 148 13 chr11 19671355 19671658 -129111814 + MER2 DNA MER2_type 1 344 0 635 215 0 51 chr11 19672773 19672931 -129110541 + MIR SINE MIR 73 222 -40 507 225 0 0 chr11 19674283 19674372 -129109100 - MER81 DNA DNA -25 89 1 322 333 80 9 chr11 19675441 19675654 -129107818 + L3 LINE CR1 1347 1574 -3 1630 206 46 3 chr11 19675696 19676022 -129107450 + MER58B DNA MER1_type 2 341 0 2484 67 0 0 chr11 19676256 19676555 -129106917 + AluY SINE Alu 1 299 -12 786 229 20 35 chr11 19676874 19677075 -129106397 + MLT1D LTR MaLR 44 241 -264 436 212 0 0 chr11 19677085 19677170 -129106302 + MLT1D LTR MaLR 404 488 -17 864 250 82 55 chr11 19677562 19677588 -129105884 - L1ME2 LINE L1 -1 6163 6139 2826 127 12 23 chr11 19677588 19678015 -129105457 + MSTB LTR MaLR 5 426 0 864 250 82 55 chr11 19678015 19678485 -129104987 - L1ME2 LINE L1 -25 6139 5565 15565 119 30 9 chr11 19678485 19680852 -129102620 + Tigger1 DNA MER2_type 3 2418 0 864 250 82 55 chr11 19680852 19680965 -129102507 - L1ME2 LINE L1 -599 5565 5456 1631 218 70 14 chr11 19681671 19682084 -129101388 + MER63B DNA MER1_type 1 436 0 553 253 116 27 chr11 19682558 19682783 -129100689 - MIR SINE MIR -11 251 7 550 192 34 20 chr11 19683123 19683269 -129100203 + L1MA10 LINE L1 6180 6327 -7 936 167 83 86 chr11 19683271 19683566 -129099906 + L1ME1 LINE L1 5881 6184 0 340 248 26 26 chr11 19683828 19683941 -129099531 - MIR SINE MIR -130 132 20 2131 207 37 25 chr11 19684106 19684617 -129098855 + L1MD3 LINE L1 7479 7995 0 300 70 0 0 chr11 19685021 19685064 -129098408 + (TG)n Simple_repeat Simple_repeat 1 43 0 330 123 0 0 chr11 19685064 19685121 -129098351 + (GA)n Simple_repeat Simple_repeat 2 58 0 236 163 41 0 chr11 19685122 19685171 -129098301 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 1139 230 325 9 chr11 19685827 19686409 -129097063 - LTR50 LTR ERVL -14 781 16 393 306 92 5 chr11 19686552 19686748 -129096724 - MIR SINE MIR 0 262 50 4844 136 14 37 chr11 19686941 19686966 -129096506 + L1PA15 LINE L1 4618 4642 -1523 1630 179 3 50 chr11 19686966 19687285 -129096187 + AluJo SINE Alu 1 304 -8 4844 136 14 37 chr11 19687285 19687555 -129095917 + L1PA15 LINE L1 4642 4917 -1248 1950 124 88 28 chr11 19687555 19687909 -129095563 + THE1C LTR MaLR 1 375 0 4844 136 14 37 chr11 19687909 19689130 -129094342 + L1PA15 LINE L1 4917 6162 -3 215 317 8 25 chr11 19689285 19689405 -129094067 - MIR SINE MIR 0 262 145 598 263 7 7 chr11 19689480 19689632 -129093840 - MIR SINE MIR -109 153 2 341 237 47 91 chr11 19689648 19689901 -129093571 + L1ME4a LINE L1 5852 6093 -28 25 0 0 0 chr11 19690413 19690438 -129093034 + AT_rich Low_complexity Low_complexity 1 25 0 1198 190 24 9 chr11 19690799 19691010 -129092462 - MER58A DNA MER1_type -10 214 1 510 301 95 35 chr11 19691103 19691502 -129091970 - L2 LINE L2 -6 3307 2885 1000 217 45 20 chr11 19691525 19691769 -129091703 + AluJo SINE Alu 55 304 -8 597 297 34 22 chr11 19692513 19692764 -129090708 + MIR SINE MIR 2 262 0 1926 149 21 0 chr11 19692850 19693138 -129090334 + AluJb SINE Alu 1 294 -18 295 276 92 11 chr11 19693183 19693357 -129090115 + L1ME LINE L1 5611 5798 -323 211 189 0 0 chr11 19693511 19693548 -129089924 + (CA)n Simple_repeat Simple_repeat 2 38 0 222 37 0 0 chr11 19693549 19693576 -129089896 + (GA)n Simple_repeat Simple_repeat 2 28 0 1283 89 0 11 chr11 19693618 19693797 -129089675 - L1PA11 LINE L1 -3 6171 5995 2678 24 0 7 chr11 19694532 19694830 -129088642 - AluY SINE Alu -15 296 1 1413 245 139 44 chr11 19694940 19695513 -129087959 + MLT1G LTR MaLR 1 590 0 419 284 84 21 chr11 19695525 19695715 -129087757 + MIR SINE MIR 28 229 -33 297 220 136 52 chr11 19696356 19696547 -129086925 - MIR SINE MIR 0 262 56 2455 98 0 0 chr11 19696562 19696869 -129086603 - AluSx SINE Alu -5 307 1 189 0 0 0 chr11 19697530 19697551 -129085921 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 419 321 104 8 chr11 19698536 19698776 -129084696 + L3 LINE CR1 1303 1565 -12 1613 225 71 46 chr11 19698912 19698940 -129084532 - MLT1F1 LTR MaLR -2 565 539 1612 189 51 43 chr11 19698940 19699100 -129084372 + MLT1A2 LTR MaLR 1 158 -216 2110 126 0 13 chr11 19699100 19699410 -129084062 + AluSx SINE Alu 1 306 -6 1612 189 51 43 chr11 19699410 19699620 -129083852 + MLT1A2 LTR MaLR 158 374 0 1613 225 71 46 chr11 19699620 19700071 -129083401 - MLT1F1 LTR MaLR -28 539 74 262 277 139 0 chr11 19700160 19700261 -129083211 + L2 LINE L2 3198 3312 -1 1108 86 43 21 chr11 19700336 19700522 -129082950 - L1MA7 LINE L1 0 6291 6102 279 0 0 0 chr11 19700962 19700993 -129082479 + (CTG)n Simple_repeat Simple_repeat 3 33 0 243 88 0 0 chr11 19701253 19701287 -129082185 + (A)n Simple_repeat Simple_repeat 1 34 0 256 247 26 26 chr11 19701726 19701803 -129081669 + GA-rich Low_complexity Low_complexity 4 80 0 250 269 15 0 chr11 19702301 19702368 -129081104 - L2 LINE L2 -8 3305 3238 2495 132 45 26 chr11 19702452 19702876 -129080596 + MSTB1 LTR MaLR 1 432 0 2247 131 33 25 chr11 19703144 19703503 -129079969 - THE1B LTR MaLR -2 362 1 186 43 0 0 chr11 19703548 19703571 -129079901 + (CCCCAG)n Simple_repeat Simple_repeat 2 24 0 790 231 232 16 chr11 19703965 19704378 -129079094 - L2 LINE L2 -28 3285 2776 620 214 184 5 chr11 19705901 19706102 -129077370 - MIR SINE MIR -24 238 2 318 195 142 0 chr11 19706107 19706220 -129077252 + MER113 DNA MER1_type? 82 210 -311 2241 107 7 0 chr11 19707697 19707995 -129075477 - AluSx SINE Alu -9 303 4 18287 91 6 1 chr11 19708221 19711538 -129071934 - L1PA8 LINE L1 0 6172 2839 513 227 147 1 chr11 19712392 19712571 -129070901 + L1ME1 LINE L1 5974 6164 0 236 250 0 89 chr11 19712821 19712933 -129070539 + MIR SINE MIR 90 191 -71 321 331 63 7 chr11 19713634 19713776 -129069696 - L2 LINE L2 0 3272 3123 186 43 0 0 chr11 19713984 19714007 -129069465 + (CA)n Simple_repeat Simple_repeat 1 23 0 2121 125 98 47 chr11 19714076 19714483 -129068989 + MSTA LTR MaLR 1 428 0 2016 93 3 60 chr11 19715195 19715496 -129067976 + AluSg SINE Alu 13 296 -14 328 316 68 0 chr11 19715714 19715847 -129067625 + MIR SINE MIR 64 205 -57 283 258 125 33 chr11 19715883 19716003 -129067469 - MIR3 SINE MIR -76 132 2 814 232 31 35 chr11 19716112 19716366 -129067106 - MIR SINE MIR 0 262 10 2029 139 10 3 chr11 19716708 19717003 -129066469 + AluJb SINE Alu 1 297 -15 3124 208 36 11 chr11 19717158 19717794 -129065678 + MER82 DNA MER2_type 2 653 0 756 229 212 31 chr11 19718159 19718578 -129064894 + L2 LINE L2 2819 3313 0 366 337 62 16 chr11 19718622 19718815 -129064657 - MIR SINE MIR -32 230 29 241 176 0 68 chr11 19718825 19718899 -129064573 - MER5C DNA MER1_type -6 318 250 228 224 75 0 chr11 19718960 19719027 -129064445 - MER5C DNA MER1_type -210 114 43 196 265 106 69 chr11 19719309 19719498 -129063974 + L2 LINE L2 3027 3222 -91 209 323 21 0 chr11 19719558 19719651 -129063821 - MIR SINE MIR -125 137 43 771 176 72 0 chr11 19719919 19720072 -129063400 - MER53 DNA DNA -4 185 22 196 167 0 153 chr11 19720111 19720183 -129063289 - MIR SINE MIR -120 142 82 1099 219 26 87 chr11 19720466 19720845 -129062627 + L1ME3 LINE L1 5776 6131 -31 3399 25 8 0 chr11 19721069 19721464 -129062008 + L1PA5 LINE L1 5757 6154 0 776 255 5 25 chr11 19721534 19721738 -129061734 + MIR SINE MIR 60 259 -3 298 291 18 91 chr11 19721829 19721880 -129061592 + MIR3 SINE MIR 35 88 -120 2545 138 13 0 chr11 19721880 19722265 -129061207 - MLT1B LTR MaLR 0 390 1 298 291 18 91 chr11 19722265 19722378 -129061094 + MIR3 SINE MIR 88 187 -21 376 260 14 68 chr11 19722458 19722604 -129060868 - L2 LINE L2 -1 3271 3134 225 333 128 0 chr11 19723242 19723359 -129060113 - L2 LINE L2 -16 3256 3125 265 302 71 0 chr11 19723518 19723644 -129059828 - MIR3 SINE MIR -62 146 12 210 143 0 0 chr11 19723922 19723957 -129059515 + (TG)n Simple_repeat Simple_repeat 1 35 0 338 313 18 102 chr11 19724254 19724529 -129058943 + L2 LINE L2 3020 3271 -1 239 200 36 18 chr11 19724554 19724609 -129058863 + L2 LINE L2 3201 3256 -16 367 216 108 61 chr11 19725023 19725171 -129058301 + MIR SINE MIR 107 261 -1 281 250 40 0 chr11 19726008 19726084 -129057388 + L2 LINE L2 3229 3307 -6 358 287 29 15 chr11 19726629 19726765 -129056707 + MIR SINE MIR 16 153 -55 1972 131 25 0 chr11 19727511 19727793 -129055679 - AluJo SINE Alu -16 296 8 388 321 103 22 chr11 19727907 19728085 -129055387 - L3 LINE CR1 -13 1564 1402 2582 40 7 7 chr11 19728085 19728388 -129055084 - AluY SINE Alu -8 303 1 388 321 103 22 chr11 19728388 19728576 -129054896 - L3 LINE CR1 -175 1402 1168 206 256 323 15 chr11 19728606 19728739 -129054733 + MIR SINE MIR 35 208 -54 288 256 16 83 chr11 19729277 19729398 -129054074 + MLT1K LTR MaLR 136 248 -340 193 125 0 25 chr11 19729496 19729536 -129053936 - L2 LINE L2 -8 3305 3267 660 265 62 9 chr11 19729541 19729752 -129053720 - LTR33A LTR ERVL -9 514 293 266 283 26 44 chr11 19730159 19730272 -129053200 - L2 LINE L2 -37 3276 3166 903 270 52 11 chr11 19730314 19730419 -129053053 - LTR16A1 LTR ERVL 0 457 358 1740 192 157 17 chr11 19730419 19730826 -129052646 + MLT2C2 LTR ERVL 1 464 0 903 270 52 11 chr11 19730826 19730987 -129052485 - LTR16A1 LTR ERVL -99 358 180 277 281 35 61 chr11 19731491 19731556 -129051916 + MER81 DNA DNA 4 66 -48 1722 149 51 60 chr11 19731556 19731871 -129051601 - AluSx SINE Alu 0 312 1 277 281 35 61 chr11 19731871 19731919 -129051553 + MER81 DNA DNA 66 114 0 2227 119 0 3 chr11 19733679 19733981 -129049491 - AluSx SINE Alu -10 302 2 2424 134 13 10 chr11 19735498 19735887 -129047585 - MLT1B LTR MaLR 0 390 1 323 300 108 96 chr11 19735966 19736363 -129047109 + L2 LINE L2 2870 3271 -1 652 229 150 18 chr11 19736478 19736829 -129046643 + MLT1J2 LTR MaLR 22 450 0 1840 110 0 4 chr11 19737248 19737494 -129045978 - AluSx SINE Alu -13 299 55 226 0 0 0 chr11 19737648 19737673 -129045799 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2095 106 11 0 chr11 19737673 19737955 -129045517 - AluSp SINE Alu -28 285 1 308 288 291 26 chr11 19738147 19738525 -129044947 + L2 LINE L2 2149 2626 -688 773 285 208 6 chr11 19738538 19739089 -129044383 - LTR50 LTR ERVL 0 795 30 777 269 28 43 chr11 19739146 19739399 -129044073 - MIR SINE MIR -2 260 12 200 324 213 0 chr11 19739482 19739590 -129043882 - MER5A DNA MER1_type -1 188 58 207 250 12 88 chr11 19739796 19739876 -129043596 - L2 LINE L2 -4 3309 3236 245 258 30 0 chr11 19739882 19739948 -129043524 + MIR SINE MIR 70 137 -125 297 326 0 0 chr11 19740058 19740147 -129043325 - L2 LINE L2 -508 2806 2718 2681 45 0 6 chr11 19741442 19741753 -129041719 - AluY SINE Alu -2 309 1 1234 187 44 4 chr11 19742496 19742721 -129040751 + Tigger7 DNA MER2_type 2 235 -2252 622 182 0 0 chr11 19742732 19742831 -129040641 + Tigger7 DNA MER2_type 2389 2487 0 184 331 71 43 chr11 19742931 19743115 -129040357 + L2 LINE L2 2897 3085 -187 189 310 80 10 chr11 19744384 19744484 -129038988 + MIR SINE MIR 107 213 -49 2193 85 0 0 chr11 19744489 19744799 -129038673 + AluSg SINE Alu 1 310 0 304 255 38 28 chr11 19744816 19744922 -129038550 - MIR SINE MIR -141 121 15 209 234 0 21 chr11 19745362 19745409 -129038063 + CT-rich Low_complexity Low_complexity 3 48 0 192 77 0 0 chr11 19745410 19745436 -129038036 + (TTA)n Simple_repeat Simple_repeat 2 27 0 519 263 145 7 chr11 19745913 19746065 -129037407 + MIR3 SINE MIR 30 202 -6 311 344 32 16 chr11 19746112 19746237 -129037235 - MIR SINE MIR -62 146 20 198 0 0 0 chr11 19746462 19746484 -129036988 + (A)n Simple_repeat Simple_repeat 1 22 0 413 313 0 0 chr11 19747872 19747984 -129035488 - L3 LINE CR1 -128 1449 1338 1609 173 0 4 chr11 19748779 19749034 -129034438 + AluJb SINE Alu 35 288 -24 32 0 0 0 chr11 19749062 19749094 -129034378 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr11 19749689 19749710 -129033762 + AT_rich Low_complexity Low_complexity 1 21 0 308 302 122 34 chr11 19749801 19750006 -129033466 - L3b LINE CR1 -208 1375 1153 230 295 18 43 chr11 19751373 19751522 -129031950 + MIR SINE MIR 16 175 -87 327 329 140 12 chr11 19752050 19752214 -129031258 + MIR3 SINE MIR 3 187 -21 290 250 0 53 chr11 19754562 19754638 -129028834 - L3 LINE CR1 -208 1369 1298 780 275 183 39 chr11 19754728 19755165 -129028307 - L3 LINE CR1 -296 1281 782 23 54 0 0 chr11 19755388 19755425 -129028047 + AT_rich Low_complexity Low_complexity 1 37 0 382 327 114 15 chr11 19755428 19755630 -129027842 - MIR SINE MIR -11 251 30 255 210 16 97 chr11 19757188 19757312 -129026160 - MER112 DNA MER1_type -13 247 134 202 256 0 0 chr11 19757988 19758031 -129025441 + (TAA)n Simple_repeat Simple_repeat 2 44 0 181 273 18 0 chr11 19758080 19758135 -129025337 - MIR SINE MIR -97 165 110 480 293 246 20 chr11 19759699 19760265 -129023207 - L2 LINE L2 -258 3055 2364 282 226 400 32 chr11 19760269 19760424 -129023048 - MIR SINE MIR -15 247 36 2094 104 0 0 chr11 19761257 19761527 -129021945 - AluSq SINE Alu -9 304 35 460 306 180 13 chr11 19761787 19762176 -129021296 - L2 LINE L2 -910 2404 1951 514 239 103 19 chr11 19762591 19762746 -129020726 - L2 LINE L2 -4 3309 3142 1054 263 344 7 chr11 19762748 19763315 -129020157 - L2 LINE L2 -497 2817 2060 407 375 34 11 chr11 19766401 19766577 -129016895 - L3 LINE CR1 0 1577 1398 272 210 16 0 chr11 19767752 19767814 -129015658 + L3b LINE CR1 1347 1409 -174 2120 104 40 0 chr11 19767878 19768176 -129015296 - AluY SINE Alu -1 310 1 240 147 0 0 chr11 19769129 19769163 -129014309 - Charlie5 DNA MER1_type -2415 197 164 253 140 20 20 chr11 19769790 19769840 -129013632 - MARNA DNA Mariner -342 244 195 692 335 61 31 chr11 19771150 19771609 -129011863 - L2 LINE L2 -300 3013 2543 2170 97 24 0 chr11 19771739 19772027 -129011445 - AluSx SINE Alu -17 295 1 306 0 0 0 chr11 19772394 19772428 -129011044 + (CA)n Simple_repeat Simple_repeat 2 35 0 270 269 126 59 chr11 19773424 19773543 -129009929 - L2 LINE L2 0 3272 3146 814 125 0 0 chr11 19774016 19774128 -129009344 + AluSg/x SINE Alu 191 302 -10 1610 216 92 101 chr11 19774331 19774934 -129008538 + MLT1E LTR MaLR 1 624 0 42794 32 23 2 chr11 19775781 19781800 -129001672 - L1PA3 LINE L1 0 6155 3 1715 153 0 70 chr11 19781819 19781995 -129001477 - AluJo SINE Alu -20 292 146 4002 64 6 2 chr11 19781995 19782510 -129000962 - L1PA7 LINE L1 -4 6150 5634 1715 153 0 70 chr11 19782510 19782647 -129000825 - AluJo SINE Alu -166 146 1 370 258 203 8 chr11 19782700 19782828 -129000644 - MARNA DNA Mariner -38 548 396 207 0 0 0 chr11 19782917 19782940 -129000532 + (TA)n Simple_repeat Simple_repeat 2 24 0 233 254 0 0 chr11 19782984 19783043 -129000429 - L1ME3 LINE L1 -85 6077 6019 1436 262 46 65 chr11 19783157 19783906 -128999566 - L1ME3 LINE L1 -208 5962 5234 1776 288 95 53 chr11 19783924 19784948 -128998524 + L1MEc LINE L1 35 1132 -5264 2074 108 11 0 chr11 19784948 19785225 -128998247 + AluSx SINE Alu 22 301 -11 1776 288 95 53 chr11 19785225 19785573 -128997899 + L1MEc LINE L1 1132 1464 -4932 1880 81 0 4 chr11 19785577 19785847 -128997625 + AluY SINE Alu 35 303 0 1295 104 0 0 chr11 19785847 19786020 -128997452 + AluSg/x SINE Alu 130 302 -8 225 155 17 17 chr11 19786050 19786108 -128997364 + L1MCa LINE L1 1511 1568 -4858 2771 245 57 58 chr11 19786136 19786764 -128996708 + L1M4 LINE L1 2971 3598 -2548 2315 73 14 0 chr11 19786764 19787051 -128996421 - AluY SINE Alu -20 291 1 2771 245 57 58 chr11 19787051 19787713 -128995759 + L1M4 LINE L1 3598 4260 -1886 761 247 0 0 chr11 19787810 19787960 -128995512 - Tigger3(Golem) DNA MER2_type -2 3027 2878 228 298 53 0 chr11 19787961 19788018 -128995454 - Tigger3(Golem) DNA MER2_type -2969 60 1 424 212 113 52 chr11 19788049 19788261 -128995211 + MARNA DNA Mariner 221 445 -141 28 29 0 0 chr11 19788293 19788328 -128995144 + AT_rich Low_complexity Low_complexity 1 35 0 7135 169 23 23 chr11 19788338 19790212 -128993260 + L1PA14 LINE L1 4078 5956 -205 2083 132 3 43 chr11 19790212 19790537 -128992935 + AluSx SINE Alu 1 312 0 7135 169 23 23 chr11 19790537 19790743 -128992729 + L1PA14 LINE L1 5955 6160 -1 3230 198 88 19 chr11 19790829 19791793 -128991679 - L1ME1 LINE L1 -26 6140 5089 24 91 0 0 chr11 19792330 19792396 -128991076 + AT_rich Low_complexity Low_complexity 1 66 0 316 260 152 83 chr11 19792459 19793064 -128990408 - L1ME4a LINE L1 -100 6021 5374 180 0 0 0 chr11 19793064 19793084 -128990388 + (TTG)n Simple_repeat Simple_repeat 2 21 0 316 260 152 83 chr11 19793084 19793150 -128990322 - L1ME4a LINE L1 -747 5374 5314 1375 191 3 67 chr11 19793198 19793513 -128989959 - AluJo SINE Alu -13 299 5 22 80 0 0 chr11 19794061 19794111 -128989361 + AT_rich Low_complexity Low_complexity 1 50 0 890 260 239 24 chr11 19794177 19794432 -128989040 + Charlie7 DNA MER1_type 125 324 -2288 189 0 0 0 chr11 19794432 19794453 -128989019 + (TAA)n Simple_repeat Simple_repeat 1 21 0 890 260 239 24 chr11 19794453 19794658 -128988814 + Charlie7 DNA MER1_type 324 684 -1928 182 396 36 7 chr11 19794954 19795093 -128988379 + MIR3 SINE MIR 60 202 -6 491 269 39 8 chr11 19795366 19795496 -128987976 - L2 LINE L2 0 3313 3180 202 290 136 32 chr11 19795619 19795774 -128987698 + MIR3 SINE MIR 10 180 -28 190 211 0 39 chr11 19795937 19795989 -128987483 + MIR3 SINE MIR 154 203 -5 1306 235 195 10 chr11 19796229 19796727 -128986745 + MLT1G LTR MaLR 1 590 0 204 205 0 0 chr11 19796910 19796949 -128986523 + GA-rich Low_complexity Low_complexity 2 40 0 1088 248 49 54 chr11 19797023 19797457 -128986015 - L2 LINE L2 -1 3312 2843 2186 86 17 3 chr11 19797457 19797747 -128985725 + AluSc SINE Alu 1 294 -15 1088 248 49 54 chr11 19797747 19797787 -128985685 - L2 LINE L2 -470 2843 2804 409 215 75 28 chr11 19797836 19797943 -128985529 + L2 LINE L2 3200 3311 -2 421 282 15 8 chr11 19797947 19798078 -128985394 + MIR SINE MIR 57 188 -74 340 327 9 0 chr11 19798804 19798911 -128984561 - L2 LINE L2 -3 3310 3203 694 286 30 0 chr11 19800003 19800202 -128983270 + MIR SINE MIR 55 259 -3 215 160 20 20 chr11 19800222 19800272 -128983200 + MIR SINE MIR 83 132 -76 28 48 0 0 chr11 19800640 19800682 -128982790 + AT_rich Low_complexity Low_complexity 1 42 0 703 132 8 8 chr11 19801390 19801519 -128981953 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 1549 140 121 34 chr11 19801866 19802130 -128981342 + AluJo SINE Alu 1 287 -25 265 250 155 0 chr11 19802419 19802503 -128980969 + MIR SINE MIR 17 113 -95 2409 93 3 0 chr11 19802621 19802922 -128980550 + AluSp SINE Alu 1 302 -11 819 196 0 0 chr11 19802977 19803115 -128980357 + FAM SINE Alu 26 163 -22 382 288 66 60 chr11 19803159 19803461 -128980011 - L3 LINE CR1 -558 1019 716 236 326 11 11 chr11 19803503 19803592 -128979880 - L2 LINE L2 0 3272 3184 277 203 0 17 chr11 19803701 19803760 -128979712 + MLT1J2 LTR MaLR 27 84 -366 578 268 109 14 chr11 19805601 19805821 -128977651 + MIR SINE MIR 22 262 0 2332 132 8 35 chr11 19806236 19806607 -128976865 + THE1B LTR MaLR 1 361 -3 355 238 149 18 chr11 19807075 19807243 -128976229 + MIR SINE MIR 23 212 -50 188 182 0 23 chr11 19807523 19807567 -128975905 - L2 LINE L2 -1317 1997 1955 324 291 94 0 chr11 19808209 19808326 -128975146 - MIR3 SINE MIR -4 204 77 431 257 9 9 chr11 19808496 19808609 -128974863 - MIR SINE MIR -63 145 33 198 0 0 0 chr11 19808862 19808884 -128974588 + (A)n Simple_repeat Simple_repeat 1 22 0 657 246 55 35 chr11 19809164 19809420 -128974052 - MIR SINE MIR -1 261 1 976 191 0 0 chr11 19809496 19809664 -128973808 + FRAM SINE Alu 1 168 -8 21 36 0 0 chr11 19809761 19809789 -128973683 + AT_rich Low_complexity Low_complexity 1 28 0 11571 184 23 10 chr11 19809807 19813252 -128970220 - L1PA16 LINE L1 -3 6163 2680 2440 87 0 0 chr11 19813369 19813667 -128969805 - AluY SINE Alu -13 298 1 27 0 0 0 chr11 19814428 19814455 -128969017 + AT_rich Low_complexity Low_complexity 1 27 0 432 263 15 23 chr11 19814541 19814674 -128968798 + L2 LINE L2 3182 3313 0 187 323 15 0 chr11 19814755 19814820 -128968652 - L2 LINE L2 -21 3251 3186 283 270 43 17 chr11 19814863 19814978 -128968494 - L2 LINE L2 -1 3271 3154 229 255 47 57 chr11 19815050 19815156 -128968316 + L3 LINE CR1 1416 1520 -57 2178 116 7 0 chr11 19815157 19815458 -128968014 - AluSx SINE Alu -9 303 1 2416 102 0 0 chr11 19815721 19816025 -128967447 + AluSg SINE Alu 1 304 -6 334 226 151 19 chr11 19817387 19817493 -128965979 + MIR SINE MIR 26 145 -63 183 80 0 0 chr11 19819272 19819297 -128964175 + (A)n Simple_repeat Simple_repeat 1 25 0 25 83 0 0 chr11 19819399 19819459 -128964013 + GC_rich Low_complexity Low_complexity 1 60 0 195 42 0 0 chr11 19819766 19819790 -128963682 + (CGG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr11 19820306 19820340 -128963132 + AT_rich Low_complexity Low_complexity 1 34 0 351 245 0 32 chr11 19821849 19821892 -128961580 + MIR SINE MIR 60 103 -105 583 113 0 0 chr11 19821892 19821972 -128961500 + MADE1 DNA Mariner 1 80 0 351 245 0 32 chr11 19821972 19822022 -128961450 + MIR SINE MIR 103 150 -58 532 138 23 0 chr11 19822287 19822374 -128961098 + L1MD3 LINE L1 7893 7981 -14 984 275 50 45 chr11 19824243 19824665 -128958807 - L2 LINE L2 -8 3305 2882 250 252 55 110 chr11 19825047 19825112 -128958360 + MIR SINE MIR 66 122 -140 2553 52 0 3 chr11 19825112 19825421 -128958051 - AluY SINE Alu -3 308 1 250 252 55 110 chr11 19825421 19825482 -128957990 + MIR SINE MIR 122 185 -77 2053 91 0 0 chr11 19826621 19826884 -128956588 - AluSc SINE Alu -9 300 38 384 250 114 57 chr11 19877006 19877182 -128906290 + L2 LINE L2 2868 3053 -219 226 343 25 16 chr11 19877347 19877503 -128905969 + MIR SINE MIR 35 192 -62 225 261 130 0 chr11 19877542 19877611 -128905861 - MIR SINE MIR 0 262 185 478 209 32 110 chr11 19877611 19877956 -128905516 - L1MD2 LINE L1 -12 6347 5971 8439 128 25 0 chr11 19878060 19879311 -128904161 + Tigger1 DNA MER2_type 1137 2418 0 16028 47 4 1 chr11 19879488 19881440 -128902032 - L1P LINE L1 -786 5360 3403 202 216 0 0 chr11 19881540 19881577 -128901895 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 237 273 141 25 chr11 19881798 19881919 -128901553 - MIR SINE MIR -12 250 116 288 0 0 0 chr11 19882346 19882378 -128901094 + (TG)n Simple_repeat Simple_repeat 1 32 0 465 294 28 56 chr11 19882883 19883097 -128900375 + MIR SINE MIR 7 214 -48 614 262 70 47 chr11 19883498 19883796 -128899676 - L2 LINE L2 -49 3264 2960 398 239 299 0 chr11 19883812 19884023 -128899449 + L2 LINE L2 2761 3025 -288 22761 78 4 4 chr11 19884136 19887106 -128896366 - L1P LINE L1 -3165 2981 11 6537 121 44 3 chr11 19887145 19888197 -128895275 - L1MA5A LINE L1 -6 6291 5202 454 247 5 102 chr11 19888426 19888612 -128894860 + MIR SINE MIR 86 253 -9 204 245 202 32 chr11 19888644 19888738 -128894734 + L2 LINE L2 3188 3297 -16 363 286 106 70 chr11 19888767 19888812 -128894660 + MLT1H LTR MaLR 1 43 -506 327 96 0 0 chr11 19888812 19888864 -128894608 + (CA)n Simple_repeat Simple_repeat 2 53 0 363 286 106 70 chr11 19888864 19889280 -128894192 + MLT1H LTR MaLR 43 549 0 199 105 0 105 chr11 19889628 19889666 -128893806 - MIR SINE MIR -164 98 65 2185 195 32 36 chr11 19889682 19890184 -128893288 - MLT1D LTR MaLR 0 505 6 961 242 0 0 chr11 19891004 19891215 -128892257 + MIR SINE MIR 13 223 -39 239 316 128 8 chr11 19891333 19891450 -128892022 + MIR SINE MIR 16 146 -62 587 170 38 9 chr11 19891457 19891563 -128891909 - MLT1H1 LTR MaLR 0 555 447 539 329 112 8 chr11 19891601 19891850 -128891622 - MLT1H1 LTR MaLR -257 298 24 2485 135 17 6 chr11 19891932 19891961 -128891511 + L1MC/D LINE L1 5129 5156 -1177 4312 148 16 3 chr11 19891961 19892664 -128890808 - L1MC1 LINE L1 0 6333 5622 2485 135 17 6 chr11 19892664 19893130 -128890342 + L1MC1 LINE L1 5156 5625 -708 355 276 0 10 chr11 19893283 19893381 -128890091 + L3 LINE CR1 1390 1486 -91 596 242 42 33 chr11 19893628 19893843 -128889629 - MIR SINE MIR 0 262 46 482 227 120 13 chr11 19895282 19895432 -128888040 + MIR SINE MIR 81 246 -16 1025 203 0 0 chr11 19895650 19895827 -128887645 - MER45A DNA AcHobo 0 178 2 306 258 200 0 chr11 19896343 19896498 -128886974 + MIR SINE MIR 46 231 -31 811 227 114 14 chr11 19896577 19896797 -128886675 - MIR SINE MIR -12 250 9 289 298 11 99 chr11 19897258 19897449 -128886023 + L2 LINE L2 2886 3059 -213 200 200 243 14 chr11 19897578 19897648 -128885824 + L2 LINE L2 3227 3312 -1 207 241 13 89 chr11 19897976 19898055 -128885417 + MIR3 SINE MIR 112 184 -24 212 315 0 0 chr11 19898892 19898946 -128884526 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 212 311 0 0 chr11 19899286 19899347 -128884125 - MIR SINE MIR -55 153 93 662 260 28 0 chr11 19899468 19899649 -128883823 + MIR SINE MIR 9 194 -68 778 243 11 0 chr11 19900298 19900487 -128882985 - MIR SINE MIR -22 240 50 330 286 86 4 chr11 19900534 19900665 -128882807 - MIR SINE MIR -60 148 44 213 43 0 65 chr11 19900734 19900780 -128882692 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2778 188 34 9 chr11 19900857 19901383 -128882089 + MLT1F LTR MaLR 1 539 -3 24 77 0 0 chr11 19901814 19901866 -128881606 + AT_rich Low_complexity Low_complexity 1 52 0 301 275 237 0 chr11 19901887 19902018 -128881454 + L2 LINE L2 3152 3313 0 202 264 35 35 chr11 19902909 19902996 -128880476 + MER5A DNA MER1_type 98 184 -5 237 182 197 0 chr11 19903080 19903146 -128880326 + MIR SINE MIR 112 190 -72 211 291 13 25 chr11 19904374 19904453 -128879019 + GA-rich Low_complexity Low_complexity 1 78 0 384 317 34 29 chr11 19904469 19904677 -128878795 - MIR SINE MIR -21 241 33 261 293 68 20 chr11 19904710 19904857 -128878615 - L1ME LINE L1 -333 5788 5635 613 303 68 8 chr11 19904970 19905204 -128878268 - MLT1J LTR MaLR -84 427 180 5385 131 13 44 chr11 19905253 19906125 -128877347 + Tigger1 DNA MER2_type 3 847 -1571 4129 164 12 3 chr11 19906225 19906962 -128876510 - L1 LINE L1 -1001 5145 4402 476 315 61 0 chr11 19906968 19907133 -128876339 + MIR SINE MIR 18 192 -70 2245 112 0 3 chr11 19907290 19907584 -128875888 + AluSx SINE Alu 1 293 -19 188 250 19 0 chr11 19907907 19907959 -128875513 + MIR3 SINE MIR 109 161 -47 313 303 42 8 chr11 19907982 19908101 -128875371 + MIR SINE MIR 19 141 -67 216 97 0 0 chr11 19908102 19908133 -128875339 + (GAA)n Simple_repeat Simple_repeat 2 32 0 186 103 0 0 chr11 19909664 19909693 -128873779 + (CA)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr11 19909727 19909764 -128873708 + (CA)n Simple_repeat Simple_repeat 2 38 0 292 375 0 8 chr11 19910474 19910594 -128872878 + MIR3 SINE MIR 37 155 -53 1923 143 39 0 chr11 19910789 19911069 -128872403 + AluJb SINE Alu 1 291 -21 306 164 0 0 chr11 19911107 19911162 -128872310 + A-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 19911201 19911229 -128872243 + AT_rich Low_complexity Low_complexity 1 28 0 2506 56 0 0 chr11 19911293 19911596 -128871876 - L1PA3 LINE L1 -3 6152 5850 238 287 23 11 chr11 19912454 19912541 -128870931 + MIR SINE MIR 95 182 -80 445 212 188 6 chr11 19913012 19913177 -128870295 - MIR SINE MIR -9 253 59 565 244 93 26 chr11 19914005 19914198 -128869274 + MIR SINE MIR 46 251 -11 1578 95 0 0 chr11 19914463 19914674 -128868798 + L1PA14 LINE L1 5934 6144 -17 457 289 65 91 chr11 19914759 19915112 -128868360 - L2 LINE L2 0 3272 2929 370 196 54 0 chr11 19915133 19915225 -128868247 - MLT1J1 LTR MaLR 0 446 350 299 190 17 0 chr11 19915295 19915353 -128868119 - MLT1J2 LTR MaLR -384 66 8 443 375 20 4 chr11 19915356 19915604 -128867868 - L2 LINE L2 -458 2856 2605 1700 180 40 78 chr11 19915604 19916053 -128867419 - MSTB1 LTR MaLR 0 432 1 2324 43 71 0 chr11 19916674 19916954 -128866518 - AluY SINE Alu -11 300 1 2292 152 78 2 chr11 19917655 19918051 -128865421 - MSTB LTR MaLR 0 426 1 207 268 183 0 chr11 19918152 19918234 -128865238 - MIR SINE MIR -12 250 154 428 277 5 79 chr11 19918682 19918884 -128864588 - MIR SINE MIR 0 262 76 2072 109 0 0 chr11 19918932 19919208 -128864264 + AluSg SINE Alu 35 310 0 952 169 27 0 chr11 19919223 19919371 -128864101 + MER68 LTR ERV1 1 152 -410 524 333 153 18 chr11 19919738 19920183 -128863289 + L3 LINE CR1 1072 1576 -1 300 231 15 0 chr11 19920635 19920700 -128862772 - MLT1J1 LTR MaLR 0 446 381 * 419 250 130 39 chr11 19920699 19920907 -128862565 - MLT1J2 LTR MaLR -215 235 9 6644 150 36 23 chr11 19921709 19923838 -128859634 - L1MA7 LINE L1 0 6291 4140 1515 258 77 17 chr11 19924395 19924929 -128858543 - HsTC2 DNA Tc2 -2 1896 1331 320 284 113 21 chr11 19924953 19925094 -128858378 - MIR SINE MIR -50 212 59 1758 230 49 63 chr11 19925226 19925861 -128857611 - MER21B LTR ERV1 -48 815 98 474 206 0 22 chr11 19925914 19926006 -128857466 - MER21B LTR ERV1 -773 90 1 823 78 17 9 chr11 19926031 19926146 -128857326 + L1PA13 LINE L1 5972 6087 -76 364 214 95 0 chr11 19926146 19926230 -128857242 + MLT1D LTR MaLR 115 206 -299 396 36 91 0 chr11 19926235 19926290 -128857182 + L1PA13 LINE L1 6101 6160 -3 210 275 209 0 chr11 19926873 19926964 -128856508 - L2 LINE L2 -27 3245 3136 236 307 0 0 chr11 19927077 19927152 -128856320 - L2 LINE L2 -220 3052 2978 284 313 182 24 chr11 19927888 19928179 -128855293 - L2 LINE L2 -339 2975 2639 375 23 0 0 chr11 19928179 19928223 -128855249 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 246 16 0 chr11 19929420 19929481 -128853991 + MIR SINE MIR 41 102 -106 441 244 66 70 chr11 19930438 19930651 -128852821 + MIR SINE MIR 36 247 -15 2095 98 0 44 chr11 19930664 19930990 -128852482 - AluSc SINE Alu 0 313 1 732 273 178 32 chr11 19931026 19931442 -128852030 + MLT1J1 LTR MaLR 1 446 0 216 45 23 45 chr11 19931462 19931506 -128851966 + (TTA)n Simple_repeat Simple_repeat 3 45 0 278 314 288 0 chr11 19931553 19931744 -128851728 + MIR SINE MIR 12 257 -5 201 154 0 0 chr11 19931772 19931811 -128851661 + (CAT)n Simple_repeat Simple_repeat 1 39 0 444 281 78 18 chr11 19932149 19932316 -128851156 - MIR SINE MIR -33 229 53 180 0 0 0 chr11 19932501 19932521 -128850951 + (T)n Simple_repeat Simple_repeat 1 20 0 486 223 27 47 chr11 19932551 19932699 -128850773 - MIR SINE MIR -26 236 92 216 0 0 0 chr11 19933402 19933426 -128850046 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 391 302 93 5 chr11 19934136 19934341 -128849131 + MIR SINE MIR 16 238 -24 261 274 0 0 chr11 19934800 19934862 -128848610 - L2 LINE L2 -95 3177 3116 563 264 60 6 chr11 19935368 19935535 -128847937 + MIR SINE MIR 75 250 -12 755 74 0 0 chr11 19936066 19936161 -128847311 + Alu SINE Alu 202 296 -15 270 264 36 18 chr11 19936419 19936529 -128846943 + L2 LINE L2 3115 3226 -46 280 247 13 13 chr11 19938200 19938277 -128845195 - L2 LINE L2 -1 3312 3236 242 302 86 45 chr11 19938502 19938724 -128844748 - L2 LINE L2 -344 2970 2740 396 0 0 0 chr11 19938857 19938901 -128844571 + (TG)n Simple_repeat Simple_repeat 2 45 0 187 367 13 0 chr11 19939018 19939097 -128844375 - L2 LINE L2 -14 3258 3179 2036 126 70 6 chr11 19939266 19939608 -128843864 - MER47A DNA MER2_type -2 364 1 671 181 142 71 chr11 19939635 19939861 -128843611 - MIR SINE MIR -4 258 17 312 273 11 23 chr11 19939926 19940014 -128843458 + L2 LINE L2 3209 3295 -18 197 244 0 0 chr11 19941258 19941299 -128842173 + L2 LINE L2 3191 3231 -82 645 294 116 45 chr11 19941304 19941666 -128841806 - L2 LINE L2 -1 3271 2837 886 175 73 6 chr11 19941666 19941843 -128841629 + MER5A DNA MER1_type 1 189 0 645 294 116 45 chr11 19941843 19942079 -128841393 - L2 LINE L2 -435 2837 2619 314 280 40 0 chr11 19942075 19942150 -128841322 + L2 LINE L2 3191 3268 -4 * 288 153 51 17 chr11 19942283 19942342 -128841130 + L2 LINE L2 3210 3270 -2 394 198 164 9 chr11 19942353 19942469 -128841003 - MIR SINE MIR -83 179 46 247 234 78 31 chr11 19943137 19943201 -128840271 - MIR SINE MIR -86 176 110 349 264 78 71 chr11 19943367 19943522 -128839950 - MIR SINE MIR -35 173 16 468 316 15 8 chr11 19943784 19943917 -128839555 - L2 LINE L2 -1 3312 3179 234 81 0 0 chr11 19944044 19944081 -128839391 + (TG)n Simple_repeat Simple_repeat 1 37 0 527 212 9 0 chr11 19945007 19945120 -128838352 - MIR SINE MIR -43 219 106 296 303 141 30 chr11 19945237 19945435 -128838037 - MIR SINE MIR -17 245 26 288 323 48 36 chr11 19945784 19945951 -128837521 - MIR SINE MIR -74 188 20 905 173 10 58 chr11 19946121 19946329 -128837143 + L1MB8 LINE L1 5921 6118 -60 186 265 61 0 chr11 19948293 19948342 -128835130 - L2 LINE L2 -63 3209 3158 1888 181 95 14 chr11 19948415 19948845 -128834627 + MLT1C LTR MaLR 1 465 -2 593 291 57 49 chr11 19949758 19950013 -128833459 + MIR SINE MIR 1 233 -29 261 237 33 6 chr11 19950041 19950116 -128833356 + MIR SINE MIR 92 151 -57 1680 236 22 5 chr11 19950514 19950958 -128832514 - L2 LINE L2 -688 2626 2175 792 178 0 0 chr11 19951711 19951840 -128831632 + FLAM_C SINE Alu 3 131 -2 233 362 65 7 chr11 19952131 19952269 -128831203 + MIR SINE MIR 89 234 -28 216 111 0 0 chr11 19952965 19953001 -128830471 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1777 193 11 22 chr11 19953550 19953907 -128829565 + MLT1A1 LTR MaLR 1 353 -12 203 238 0 0 chr11 19953910 19953952 -128829520 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 208 21 42 chr11 19954056 19954104 -128829368 - L2 LINE L2 -65 3207 3161 720 293 50 0 chr11 19954119 19954317 -128829155 - MIR SINE MIR -22 240 33 218 263 58 89 chr11 19955182 19955372 -128828100 + L2 LINE L2 2774 2957 -357 378 236 124 79 chr11 19956407 19956648 -128826824 - MIR SINE MIR 0 262 11 335 329 82 12 chr11 19956724 19956894 -128826578 + MIR SINE MIR 13 194 -68 241 331 53 46 chr11 19957755 19957906 -128825566 - MIR SINE MIR -18 244 93 352 231 168 17 chr11 19958099 19958230 -128825242 + MIR SINE MIR 4 150 -58 655 313 99 45 chr11 19958574 19958999 -128824473 + L2 LINE L2 2825 3272 0 570 240 74 6 chr11 19959917 19960095 -128823377 - MIR3 SINE MIR -3 205 8 2254 127 36 30 chr11 19961852 19962214 -128821258 + THE1B LTR MaLR 1 364 0 315 0 0 0 chr11 19962720 19962755 -128820717 + (CA)n Simple_repeat Simple_repeat 2 36 0 2375 110 0 0 chr11 19963432 19963732 -128819740 + AluSc SINE Alu 1 300 -9 267 321 20 73 chr11 19964201 19964447 -128819025 + L2 LINE L2 3023 3255 -58 486 311 31 42 chr11 19965184 19965375 -128818097 - MIR SINE MIR -44 218 34 591 259 100 27 chr11 19965514 19965734 -128817738 - MIR SINE MIR -21 241 6 475 304 25 39 chr11 19965916 19966120 -128817352 - L2 LINE L2 -48 3265 3065 * 1639 258 67 31 chr11 19966113 19966553 -128816919 - L2 LINE L2 -607 2707 2243 478 216 182 7 chr11 19966553 19966701 -128816771 - MER104 DNA MER2_type -2 178 5 1639 258 67 31 chr11 19966701 19966799 -128816673 - L2 LINE L2 -1071 2243 2150 343 78 0 0 chr11 19966803 19966854 -128816618 - MADE1 DNA Mariner 0 80 30 356 275 0 0 chr11 19967200 19967280 -128816192 + MIR3 SINE MIR 111 190 -18 288 288 159 12 chr11 19967315 19967478 -128815994 - MIR SINE MIR -48 214 28 961 201 10 20 chr11 19967978 19968177 -128815295 - MER20 DNA MER1_type 0 219 23 210 207 17 17 chr11 19968421 19968479 -128814993 + CT-rich Low_complexity Low_complexity 2 59 0 2863 0 0 0 chr11 19968489 19968788 -128814684 - AluYa5 SINE Alu -12 299 1 356 243 18 118 chr11 19969003 19969172 -128814300 + L2 LINE L2 3159 3310 -3 253 248 133 44 chr11 19969164 19969277 -128814195 - L2 LINE L2 -16 3297 3175 * 618 297 110 17 chr11 19969593 19969829 -128813643 + MIR SINE MIR 2 259 -3 235 246 0 16 chr11 19970793 19970854 -128812618 - MIR SINE MIR -82 126 67 433 365 20 29 chr11 19970867 19971111 -128812361 - MIR SINE MIR -13 249 8 450 219 199 27 chr11 19971203 19971349 -128812123 + MER5A DNA MER1_type 16 186 -3 234 263 111 24 chr11 19971375 19971484 -128811988 - MIR SINE MIR -69 193 66 23 33 0 0 chr11 19971980 19972010 -128811462 + AT_rich Low_complexity Low_complexity 1 30 0 646 233 144 19 chr11 19972069 19972289 -128811183 - MIR SINE MIR 0 262 13 253 250 33 0 chr11 19973009 19973069 -128810403 + MIR SINE MIR 189 250 -12 386 308 127 11 chr11 19973183 19973387 -128810085 - MIR SINE MIR -16 246 20 287 283 75 47 chr11 19973681 19973787 -128809685 - MIR3 SINE MIR -32 176 68 864 211 75 160 chr11 19973900 19974508 -128808964 - MLT1E LTR MaLR 0 567 27 236 211 224 0 chr11 19974740 19974816 -128808656 - MIR3 SINE MIR -25 183 91 186 341 119 0 chr11 19975059 19975133 -128808339 - L2 LINE L2 -216 3056 2992 2617 96 19 26 chr11 19975133 19975510 -128807962 - THE1C LTR MaLR -1 374 1 186 341 119 0 chr11 19975510 19975561 -128807911 - L2 LINE L2 -280 2992 2916 197 261 72 130 chr11 19976567 19976705 -128806767 - MIR SINE MIR -13 195 65 382 310 31 16 chr11 19977470 19977599 -128805873 + L3 LINE CR1 1369 1499 -78 300 27 0 0 chr11 19977721 19977758 -128805714 + (TG)n Simple_repeat Simple_repeat 1 37 0 265 304 144 0 chr11 19977930 19978045 -128805427 + MIR SINE MIR 17 145 -63 3447 177 69 11 chr11 19978045 19978713 -128804759 - MER44D DNA MER2_type 0 605 27 274 248 8 101 chr11 19978725 19978854 -128804618 + MIR SINE MIR 146 262 0 481 247 20 53 chr11 19979644 19979794 -128803678 + MIR SINE MIR 114 258 -4 863 289 4 13 chr11 19980194 19980426 -128803046 - MIR SINE MIR -20 242 13 255 255 99 43 chr11 19981424 19981565 -128801907 + MIR3 SINE MIR 2 150 -58 483 209 38 0 chr11 19981633 19981738 -128801734 - MER103 DNA DNA -34 132 24 718 201 15 0 chr11 19981761 19981895 -128801577 - MER58B DNA MER1_type -15 326 191 433 259 154 65 chr11 19982264 19982465 -128801007 + MIR SINE MIR 34 252 -10 410 283 19 44 chr11 19984011 19984170 -128799302 + MIR SINE MIR 53 207 -55 324 221 44 0 chr11 19984281 19984349 -128799123 - MIR SINE MIR -111 151 81 305 293 83 74 chr11 19985579 19985608 -128797864 - Charlie8 DNA MER1_type -2087 330 303 2424 79 0 3 chr11 19985608 19985900 -128797572 + AluSc SINE Alu 1 291 -18 305 293 83 74 chr11 19985900 19986099 -128797373 - Charlie8 DNA MER1_type -2114 303 100 338 312 123 7 chr11 19986903 19987057 -128796415 - MIR SINE MIR -7 255 84 341 314 202 16 chr11 19987459 19987707 -128795765 - L1MC4a LINE L1 -1904 5904 5611 525 306 17 78 chr11 19987887 19988181 -128795291 - LTR16A LTR ERVL -159 291 16 393 281 62 0 chr11 19988212 19988340 -128795132 + MLT1J LTR MaLR 90 225 -286 23 0 0 0 chr11 19988479 19988502 -128794970 + AT_rich Low_complexity Low_complexity 1 23 0 321 237 207 7 chr11 19989191 19989326 -128794146 - MIR SINE MIR -9 253 92 774 282 53 8 chr11 19989406 19989651 -128793821 - MIR SINE MIR -2 260 5 369 308 56 0 chr11 19989694 19989837 -128793635 - MIR3 SINE MIR -10 198 48 372 303 61 61 chr11 19990266 19990464 -128793008 + MIR SINE MIR 62 259 -3 396 302 94 13 chr11 19990479 19990638 -128792834 - MIR SINE MIR -2 260 89 546 238 166 6 chr11 19990856 19991037 -128792435 + LTR33 LTR ERVL 2 211 -310 375 236 16 49 chr11 19991140 19991173 -128792299 + LTR33 LTR ERVL 395 428 -93 1709 201 103 0 chr11 19991173 19991532 -128791940 + MSTD LTR MaLR 1 396 0 375 236 16 49 chr11 19991532 19991621 -128791851 + LTR33 LTR ERVL 428 513 -8 276 204 28 197 chr11 19992792 19992934 -128790538 - MIR SINE MIR -12 250 133 211 224 69 0 chr11 19993011 19993069 -128790403 + MIR SINE MIR 105 166 -96 445 260 126 39 chr11 19993113 19993188 -128790284 - MIR SINE MIR 0 262 195 1852 188 93 36 chr11 19993188 19993630 -128789842 + MLT1C LTR MaLR 1 467 0 445 260 126 39 chr11 19993630 19993785 -128789687 - MIR SINE MIR -67 195 12 399 285 42 18 chr11 19994458 19994623 -128788849 + L1ME LINE L1 5634 5802 -319 339 44 0 0 chr11 19994819 19994864 -128788608 + (TC)n Simple_repeat Simple_repeat 2 46 0 315 0 0 0 chr11 19994863 19994898 -128788574 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 211 219 16 16 chr11 19994898 19994962 -128788510 + GA-rich Low_complexity Low_complexity 2 65 0 22 0 0 0 chr11 19995739 19995761 -128787711 + AT_rich Low_complexity Low_complexity 1 22 0 353 228 25 0 chr11 19996091 19996170 -128787302 + MIR SINE MIR 118 198 -64 30 45 0 0 chr11 19996400 19996444 -128787028 + AT_rich Low_complexity Low_complexity 1 44 0 476 273 9 0 chr11 19997273 19997383 -128786089 - MIR3 SINE MIR -16 192 82 397 289 16 16 chr11 19998376 19998504 -128784968 + MER117 DNA MER1_type 28 155 -42 334 233 204 0 chr11 19998533 19998636 -128784836 + L2 LINE L2 3189 3312 -1 250 319 104 40 chr11 19998640 19998883 -128784589 - MIR SINE MIR -1 261 8 210 321 68 53 chr11 19999107 19999297 -128784175 + MIR3 SINE MIR 15 207 -1 347 277 30 20 chr11 19999423 19999524 -128783948 + MIR SINE MIR 49 150 -112 908 222 16 0 chr11 19999529 19999714 -128783758 + MER5A DNA MER1_type 1 188 -1 690 209 44 95 chr11 19999723 19999774 -128783698 + MER112 DNA MER1_type 1 53 -207 1733 112 0 12 chr11 19999774 20000032 -128783440 + AluSq SINE Alu 1 255 -58 690 209 44 95 chr11 20000032 20000253 -128783219 + MER112 DNA MER1_type 53 259 -1 2209 34 42 0 chr11 20001086 20001351 -128782121 - L1PA5 LINE L1 -4 6150 5875 186 313 0 60 chr11 20001407 20001474 -128781998 - MIR SINE MIR -2 260 198 426 250 56 0 chr11 20001500 20001608 -128781864 - MIR SINE MIR -121 141 28 706 282 94 4 chr11 20001703 20001937 -128781535 - MIR SINE MIR -6 256 2 282 345 28 14 chr11 20001953 20002098 -128781374 + L2 LINE L2 2648 2794 -520 806 279 120 39 chr11 20002370 20002753 -128780719 + MLT1K LTR MaLR 153 566 -22 226 208 57 0 chr11 20002954 20003007 -128780465 - MIR SINE MIR -103 105 50 889 221 150 9 chr11 20003146 20003372 -128780100 + MIR SINE MIR 4 261 -1 253 256 44 44 chr11 20004149 20004239 -128779233 - MIR SINE MIR -87 121 32 191 172 115 126 chr11 20004334 20004421 -128779051 - L3 LINE CR1 -896 681 596 1587 168 0 41 chr11 20004526 20004842 -128778630 - AluJo SINE Alu -7 305 3 419 279 41 34 chr11 20004909 20004922 -128778550 + L2 LINE L2 3156 3167 -146 1018 107 0 19 chr11 20004922 20005081 -128778391 - L1MD1 LINE L1 0 6242 6087 419 279 41 34 chr11 20005081 20005214 -128778258 + L2 LINE L2 3167 3303 -10 700 216 202 5 chr11 20005376 20005584 -128777888 + Charlie2a DNA MER1_type 1 249 -2613 477 238 7 26 chr11 20005585 20005736 -128777736 + Charlie2a DNA MER1_type 869 1016 -1846 350 170 38 57 chr11 20005745 20005851 -128777621 + Charlie2a DNA MER1_type 2759 2862 0 357 276 138 51 chr11 20006552 20006748 -128776724 - MIR SINE MIR 0 262 50 664 256 23 12 chr11 20006938 20007110 -128776362 + AluJb SINE Alu 135 308 -4 309 159 0 0 chr11 20007112 20007175 -128776297 + GA-rich Low_complexity Low_complexity 3 65 0 310 200 46 0 chr11 20007181 20007246 -128776226 - MER103 DNA DNA -87 79 12 406 386 33 0 chr11 20008209 20008419 -128775053 - L3 LINE CR1 -3 1574 1358 * 892 272 27 27 chr11 20008417 20008678 -128774794 - MIR SINE MIR 0 262 2 515 293 113 13 chr11 20008686 20008915 -128774557 - MIR SINE MIR 0 262 11 230 222 103 68 chr11 20008937 20009054 -128774418 - MIR SINE MIR -121 141 21 501 280 21 14 chr11 20009320 20009463 -128774009 + MIR SINE MIR 32 175 -87 384 308 123 20 chr11 20009733 20009928 -128773544 + MIR SINE MIR 2 216 -46 276 156 0 0 chr11 20010269 20010314 -128773158 + MIR SINE MIR 210 254 -8 331 270 38 106 chr11 20010943 20011180 -128772292 + MIR SINE MIR 22 242 -20 1423 77 116 5 chr11 20011861 20012068 -128771404 - MER30 DNA MER1_type 0 230 1 182 208 21 0 chr11 20013939 20013987 -128769485 + (TAA)n Simple_repeat Simple_repeat 3 51 0 354 324 13 1 chr11 20014157 20014280 -128769192 - MIR SINE MIR -68 140 15 501 283 100 35 chr11 20014510 20014740 -128768732 - MIR SINE MIR -10 252 8 2227 71 3 32 chr11 20014777 20015087 -128768385 + AluY SINE Alu 1 301 -10 483 346 24 19 chr11 20016536 20016747 -128766725 - MIR SINE MIR -11 251 40 2576 175 12 24 chr11 20016897 20017389 -128766083 + MER66B LTR ERV1 1 486 0 214 278 83 19 chr11 20017557 20017665 -128765807 - MIR SINE MIR -68 140 26 257 103 10 82 chr11 20018039 20018136 -128765336 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 472 361 26 9 chr11 20020315 20020545 -128762927 - MIR SINE MIR -6 256 23 242 259 46 76 chr11 20020730 20020861 -128762611 + MIR3 SINE MIR 46 172 -36 1813 34 102 0 chr11 20020909 20021144 -128762328 + AluSp SINE Alu 35 293 -20 21 0 0 0 chr11 20021150 20021171 -128762301 + AT_rich Low_complexity Low_complexity 1 21 0 756 274 156 2 chr11 20021290 20021661 -128761811 - LTR16A LTR ERVL 0 491 16 332 307 136 14 chr11 20022001 20022030 -128761442 - MER91A DNA MER1_type -39 157 133 279 0 0 0 chr11 20022030 20022061 -128761411 + (CCCCAG)n Simple_repeat Simple_repeat 2 32 0 332 307 136 14 chr11 20022061 20022171 -128761301 - MER91A DNA MER1_type -63 133 1 508 275 133 17 chr11 20022302 20022542 -128760930 + L1ME4a LINE L1 5598 5865 -256 1634 229 60 4 chr11 20022663 20023117 -128760355 - Charlie4a DNA MER1_type 0 508 30 503 342 30 15 chr11 20023334 20023533 -128759939 - MIR SINE MIR -49 213 12 353 259 121 20 chr11 20024220 20024377 -128759095 + MIR SINE MIR 2 212 -50 471 203 187 0 chr11 20024377 20024500 -128758972 - MLT1H LTR MaLR -2 593 448 2319 167 16 98 chr11 20024615 20025117 -128758355 - LTR32 LTR ERVL -2 469 9 753 234 98 17 chr11 20025110 20025345 -128758127 - MLT1H LTR MaLR -295 254 1 * 211 250 0 0 chr11 20025346 20025390 -128758082 + MIR SINE MIR 207 250 -12 319 268 36 43 chr11 20025399 20025532 -128757940 - MIR SINE MIR -68 140 11 312 336 16 25 chr11 20025536 20025658 -128757814 + MIR SINE MIR 79 199 -63 596 286 60 0 chr11 20026550 20026718 -128756754 + MIR SINE MIR 29 206 -56 574 182 38 50 chr11 20027058 20027217 -128756255 + MER103 DNA DNA 2 158 -8 266 196 0 0 chr11 20027968 20028019 -128755453 - MIR SINE MIR -140 122 72 188 316 108 38 chr11 20029346 20029504 -128753968 - MIR3 SINE MIR -39 169 1 353 305 115 40 chr11 20029727 20029901 -128753571 + MER5A DNA MER1_type 1 187 -2 756 244 104 5 chr11 20029916 20030117 -128753355 + MIR SINE MIR 32 252 -10 27 49 0 0 chr11 20030140 20030181 -128753291 + AT_rich Low_complexity Low_complexity 1 41 0 308 286 0 0 chr11 20030950 20031027 -128752445 - MIR SINE MIR -65 143 67 1891 118 7 4 chr11 20031043 20031323 -128752149 + AluSx SINE Alu 1 281 -31 1739 145 0 30 chr11 20032222 20032568 -128750904 - AluJb SINE Alu 0 337 1 224 282 68 39 chr11 20032921 20033024 -128750448 - MIR SINE MIR -72 190 85 494 270 0 0 chr11 20033675 20033786 -128749686 - MIR SINE MIR -147 115 5 524 254 71 119 chr11 20033864 20034285 -128749187 + L2 LINE L2 2871 3271 -1 359 252 97 58 chr11 20034759 20034965 -128748507 - MIR SINE MIR -20 242 29 22 0 0 0 chr11 20035299 20035321 -128748151 + AT_rich Low_complexity Low_complexity 1 22 0 559 240 13 45 chr11 20035529 20035683 -128747789 + L2 LINE L2 3165 3313 0 247 164 82 66 chr11 20035805 20035866 -128747606 + L2 LINE L2 3200 3261 -11 333 339 37 2 chr11 20036340 20036515 -128746957 + MIR SINE MIR 7 184 -78 4944 163 30 22 chr11 20036515 20037619 -128745853 + L1MB5 LINE L1 5009 6136 -38 2039 109 17 0 chr11 20037619 20037921 -128745551 + AluSq SINE Alu 1 307 -6 4944 163 30 22 chr11 20037921 20037961 -128745511 + L1MB5 LINE L1 6136 6174 0 272 287 53 21 chr11 20038459 20038553 -128744919 - MIR3 SINE MIR -17 191 95 712 273 10 12 chr11 20038823 20039034 -128744438 + MIR SINE MIR 10 261 -1 994 253 70 55 chr11 20039269 20039668 -128743804 + L2 LINE L2 2909 3313 0 303 288 242 26 chr11 20039733 20039886 -128743586 - MIR SINE MIR -14 248 63 448 302 141 19 chr11 20040279 20040492 -128742980 + MIR SINE MIR 30 262 0 204 86 14 93 chr11 20040511 20040593 -128742879 + MIR SINE MIR 128 256 -6 559 301 102 34 chr11 20040816 20041168 -128742304 - L2 LINE L2 -17 3296 2921 272 327 43 83 chr11 20041745 20042023 -128741449 + L2 LINE L2 2997 3263 -9 * 306 218 51 13 chr11 20041996 20042074 -128741398 - L2 LINE L2 -2 3311 3231 406 269 109 8 chr11 20042195 20042314 -128741158 - MIR3 SINE MIR -70 138 8 518 158 219 0 chr11 20042596 20042710 -128740762 - L1ME4a LINE L1 0 6121 5983 218 325 183 16 chr11 20042923 20043049 -128740423 + L2 LINE L2 3123 3269 -3 231 276 55 39 chr11 20043158 20043285 -128740187 + L2 LINE L2 3183 3311 -2 436 250 101 27 chr11 20043297 20043445 -128740027 - MIR SINE MIR -41 221 63 554 242 23 8 chr11 20044933 20045061 -128738411 + MER58B DNA MER1_type 212 341 0 197 132 0 151 chr11 20045099 20045152 -128738320 - MIR SINE MIR -149 113 69 626 267 41 12 chr11 20045354 20045526 -128737946 + MIR SINE MIR 66 242 -20 605 314 9 65 chr11 20045703 20045932 -128737540 + MIR SINE MIR 47 262 0 1326 126 372 0 chr11 20046534 20046811 -128736661 - MSTC LTR MaLR -48 380 1 249 244 0 0 chr11 20046812 20046857 -128736615 - MIR SINE MIR -8 254 210 645 259 46 23 chr11 20046857 20047073 -128736399 - L1ME LINE L1 -384 5778 5558 256 288 147 5 chr11 20047182 20047373 -128736099 - L1ME LINE L1 -913 5233 5016 * 44065 46 2 2 chr11 20047369 20053517 -128729955 - L1PA4 LINE L1 -2 6153 7 354 301 25 37 chr11 20053749 20053912 -128729560 - MLT1J1 LTR MaLR 0 446 286 355 260 90 0 chr11 20053976 20054076 -128729396 + L2 LINE L2 3205 3313 0 22 0 0 0 chr11 20054285 20054307 -128729165 + AT_rich Low_complexity Low_complexity 1 22 0 317 189 0 0 chr11 20054460 20054513 -128728959 + MER117 DNA MER1_type 109 161 -36 225 151 0 0 chr11 20055218 20055271 -128728201 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 220 256 141 70 chr11 20055411 20055567 -128727905 - L2 LINE L2 -180 3092 2926 287 297 11 0 chr11 20055903 20055992 -128727480 + MIR SINE MIR 41 130 -78 976 268 17 0 chr11 20055992 20056231 -128727241 + MIR SINE MIR 2 244 -18 222 320 103 0 chr11 20057524 20057621 -128725851 - L2 LINE L2 -25 3247 3141 1251 187 16 0 chr11 20058003 20058282 -128725190 - L1MC/D LINE L1 -731 5511 5229 502 185 11 0 chr11 20058284 20058376 -128725096 - MIR SINE MIR -65 197 105 292 290 74 34 chr11 20058833 20058995 -128724477 + MIR SINE MIR 22 189 -61 721 281 25 5 chr11 20059002 20059198 -128724274 + MIR SINE MIR 13 212 -50 783 266 180 37 chr11 20059299 20059705 -128723767 - LTR16C LTR ERVL -27 464 1 716 212 20 7 chr11 20059709 20059860 -128723612 - MIR SINE MIR -47 215 63 1635 154 22 45 chr11 20059864 20060176 -128723296 - AluJb SINE Alu -7 305 1 876 246 12 23 chr11 20060188 20060444 -128723028 + MER112 DNA MER1_type 7 259 -1 316 229 46 37 chr11 20061004 20061113 -128722359 - MIR SINE MIR -84 178 69 590 297 84 5 chr11 20061199 20061401 -128722071 + MIR SINE MIR 32 249 -13 869 239 51 47 chr11 20062647 20062902 -128720570 - MIR SINE MIR -1 261 6 1422 229 45 6 chr11 20064077 20064409 -128719063 - LTR16C LTR ERVL 0 491 147 1166 254 15 8 chr11 20064672 20064932 -128718540 + MIR SINE MIR 1 262 0 386 294 87 8 chr11 20064932 20065058 -128718414 - MIR SINE MIR -121 141 6 311 181 28 28 chr11 20066154 20066226 -128717246 - MLT1K LTR MaLR -327 261 190 2195 113 0 0 chr11 20066305 20066607 -128716865 - AluSg SINE Alu -8 302 1 409 295 94 41 chr11 20066618 20066634 -128716838 - L2 LINE L2 -257 3015 3001 1273 221 103 36 chr11 20066634 20067072 -128716400 - MLT1C LTR MaLR 0 467 1 409 295 94 41 chr11 20067072 20067421 -128716051 - L2 LINE L2 -271 3001 2629 2161 262 46 33 chr11 20067421 20067477 -128715995 - L2 LINE L2 -25 3288 3234 2061 120 0 16 chr11 20067477 20067793 -128715679 + AluY SINE Alu 1 311 0 2161 262 46 33 chr11 20067793 20068693 -128714779 - L2 LINE L2 -79 3234 2319 831 277 29 25 chr11 20068696 20068834 -128714638 - MIR SINE MIR -18 244 103 2235 120 45 25 chr11 20068834 20069191 -128714281 + THE1B LTR MaLR 1 364 0 831 277 29 25 chr11 20069191 20069294 -128714178 - MIR SINE MIR -159 103 2 28 0 0 0 chr11 20069655 20069683 -128713789 + AT_rich Low_complexity Low_complexity 1 28 0 469 304 50 8 chr11 20070386 20070585 -128712887 - MIR SINE MIR -16 246 42 506 232 196 0 chr11 20070977 20071115 -128712357 + MER5A DNA MER1_type 25 189 0 211 269 151 8 chr11 20072067 20072186 -128711286 - MIR SINE MIR -3 259 124 2101 174 102 9 chr11 20072853 20073313 -128710159 - MLT1D LTR MaLR -2 503 1 194 281 31 21 chr11 20073581 20073677 -128709795 - L2 LINE L2 -263 3009 2913 290 271 21 21 chr11 20074048 20074144 -128709328 - MIR SINE MIR -48 214 119 920 150 0 11 chr11 20074814 20074994 -128708478 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 2894 62 6 0 chr11 20075225 20075578 -128707894 - THE1A LTR MaLR 0 355 1 11992 87 10 1 chr11 20075578 20077145 -128706327 - THE1A-int LTR MaLR 0 1580 1 2587 91 3 19 chr11 20077145 20077506 -128705966 - THE1A LTR MaLR 0 355 1 732 221 113 5 chr11 20077955 20078150 -128705322 + MIR SINE MIR 36 251 -11 206 258 30 15 chr11 20078214 20078280 -128705192 - L2 LINE L2 0 3313 3247 189 107 0 0 chr11 20078647 20078675 -128704797 + (TC)n Simple_repeat Simple_repeat 2 29 0 578 200 26 0 chr11 20078681 20078796 -128704676 - L1MC1 LINE L1 -6 6327 6210 413 191 110 44 chr11 20079919 20080055 -128703417 + MER103 DNA DNA 8 152 -14 321 185 33 87 chr11 20080067 20080159 -128703313 - L1MCa LINE L1 -4363 2063 1977 223 360 0 30 chr11 20080662 20080762 -128702710 + L3 LINE CR1 1306 1402 -175 1048 319 100 36 chr11 20080938 20081724 -128701748 + L2 LINE L2 2469 3313 0 295 306 144 58 chr11 20081984 20082157 -128701315 + L3b LINE CR1 1378 1565 -18 6385 28 1 5 chr11 20082833 20083580 -128699892 - L1PA4 LINE L1 0 6155 5412 220 216 0 20 chr11 20083702 20083753 -128699719 + (TG)n Simple_repeat Simple_repeat 1 50 0 253 315 25 68 chr11 20084582 20084663 -128698809 + MER117 DNA MER1_type 42 114 -83 2450 188 26 18 chr11 20084663 20085162 -128698310 - MLT1D LTR MaLR -1 504 2 253 315 25 68 chr11 20085162 20085242 -128698230 + MER117 DNA MER1_type 114 196 -1 228 271 29 0 chr11 20085315 20085385 -128698087 - MIR SINE MIR -6 256 185 199 241 323 0 chr11 20085432 20085565 -128697907 + L2 LINE L2 2970 3145 -168 2070 101 30 0 chr11 20086413 20086710 -128696762 - AluSq SINE Alu -7 306 1 738 272 27 5 chr11 20086835 20087019 -128696453 + MIR SINE MIR 70 257 -5 589 254 21 7 chr11 20087215 20087357 -128696115 - MIR3 SINE MIR -32 176 33 487 236 155 0 chr11 20087459 20087620 -128695852 - MER5A DNA MER1_type 0 189 4 1446 180 3 10 chr11 20087630 20087930 -128695542 - MER33 DNA MER1_type 0 324 27 839 116 0 0 chr11 20088004 20088133 -128695339 - AluY SINE Alu 0 311 183 510 228 97 0 chr11 20089150 20089264 -128694208 - L2 LINE L2 0 3313 3189 255 260 39 0 chr11 20090357 20090434 -128693038 - MER116 DNA Mariner 0 80 1 288 286 110 0 chr11 20090439 20090530 -128692942 - MIR SINE MIR -3 259 159 807 249 112 13 chr11 20090530 20090763 -128692709 - LTR16A1 LTR ERVL 0 457 202 312 277 99 10 chr11 20090950 20091051 -128692421 - MIR SINE MIR -97 165 56 500 280 101 6 chr11 20091679 20091847 -128691625 + MIR SINE MIR 3 186 -76 1936 114 0 0 chr11 20092070 20092333 -128691139 + AluSx SINE Alu 1 263 -49 279 0 0 0 chr11 20092336 20092367 -128691105 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr11 20092615 20092637 -128690835 + AT_rich Low_complexity Low_complexity 1 22 0 227 321 38 76 chr11 20093147 20093272 -128690200 - L2 LINE L2 0 3272 3153 312 140 0 35 chr11 20093272 20093329 -128690143 + MER5B DNA MER1_type 1 55 -123 360 260 0 0 chr11 20093352 20093429 -128690043 - MIR SINE MIR -74 188 112 557 201 87 47 chr11 20093546 20093695 -128689777 - MIR SINE MIR -76 186 32 749 262 33 10 chr11 20094412 20094660 -128688812 - MIR SINE MIR 0 262 8 338 395 40 0 chr11 20095224 20095401 -128688071 - MIR SINE MIR -78 184 1 284 318 130 32 chr11 20095582 20095736 -128687736 - MIR SINE MIR -2 260 92 1907 177 59 35 chr11 20095785 20096209 -128687263 - MER63B DNA MER1_type -2 434 1 627 263 170 19 chr11 20096552 20096970 -128686502 - L1ME4a LINE L1 -35 6086 5606 2784 214 41 36 chr11 20097095 20097116 -128686356 + L1ME2 LINE L1 5263 5282 -896 1860 193 25 3 chr11 20097116 20097469 -128686003 - MLT1A1 LTR MaLR 0 365 5 2784 214 41 36 chr11 20097469 20097798 -128685674 + L1ME2 LINE L1 5282 5608 -570 1760 176 54 77 chr11 20097798 20098276 -128685196 + MLT1C LTR MaLR 1 467 0 2784 214 41 36 chr11 20098276 20098780 -128684692 + L1ME2 LINE L1 5608 6170 -8 429 316 44 0 chr11 20099327 20099463 -128684009 + MIR SINE MIR 109 250 -12 527 275 88 5 chr11 20100508 20100701 -128682771 - L1MC4a LINE L1 -1877 5931 5723 413 303 158 23 chr11 20101135 20101356 -128682116 - MIR SINE MIR -6 256 6 720 318 50 4 chr11 20101386 20101625 -128681847 - MIR SINE MIR 0 262 13 10105 35 1 4 chr11 20101679 20103650 -128679822 + L1PA4 LINE L1 4187 6155 0 1232 261 106 109 chr11 20104091 20104996 -128678476 - L2 LINE L2 -345 2969 2068 266 266 0 32 chr11 20105731 20105825 -128677647 - MIR SINE MIR 0 262 172 1038 231 14 5 chr11 20105837 20106053 -128677419 - MIR SINE MIR -43 219 2 621 281 49 49 chr11 20106053 20106259 -128677213 - MIR SINE MIR -56 206 1 557 229 157 74 chr11 20106739 20107076 -128676396 - L2 LINE L2 -495 2819 2455 933 284 5 0 chr11 20107120 20107335 -128676137 + MIR SINE MIR 33 248 -14 246 62 0 0 chr11 20107340 20107372 -128676100 + (TTA)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr11 20108097 20108127 -128675345 + AT_rich Low_complexity Low_complexity 1 30 0 2696 150 2 13 chr11 20108302 20108775 -128674697 - L1MB3 LINE L1 0 6183 5716 412 343 42 19 chr11 20108934 20109150 -128674322 + MIR SINE MIR 39 259 -3 190 333 178 11 chr11 20109213 20109303 -128674169 - MIR SINE MIR -64 144 40 295 272 38 8 chr11 20109346 20109479 -128673993 + MER117 DNA MER1_type 27 197 0 875 303 22 4 chr11 20110662 20110893 -128672579 - MIR SINE MIR -6 256 22 486 323 21 5 chr11 20111274 20111466 -128672006 - MER117 DNA MER1_type 0 197 3 592 293 32 45 chr11 20112197 20112443 -128671029 - MIR SINE MIR -10 252 10 262 217 72 12 chr11 20112907 20112990 -128670482 + MIR SINE MIR 128 215 -47 408 88 0 0 chr11 20113302 20113359 -128670113 + (CAT)n Simple_repeat Simple_repeat 2 58 0 270 333 98 25 chr11 20113385 20113589 -128669883 - MIR SINE MIR -36 226 8 202 158 26 0 chr11 20113635 20113673 -128669799 - MER5A DNA MER1_type -76 113 75 720 268 11 17 chr11 20114164 20114343 -128669129 + MER5B DNA MER1_type 1 178 0 242 363 114 21 chr11 20114360 20114597 -128668875 + L2 LINE L2 3014 3272 0 437 310 56 0 chr11 20114618 20114760 -128668712 - L2 LINE L2 -7 3265 3116 298 244 0 61 chr11 20114943 20115025 -128668447 + L2 LINE L2 3196 3272 0 2060 126 17 0 chr11 20115642 20115943 -128667529 + AluSx SINE Alu 1 306 -6 643 276 60 0 chr11 20116762 20116947 -128666525 + MIR SINE MIR 63 258 -4 372 307 100 51 chr11 20117354 20117835 -128665637 + L2 LINE L2 2762 3267 -5 245 353 43 0 chr11 20118400 20118539 -128664933 + MER117 DNA MER1_type 2 146 -51 1138 187 34 5 chr11 20119020 20119229 -128664243 - MER58C DNA MER1_type 0 215 1 249 339 227 4 chr11 20119238 20119498 -128663974 - L2 LINE L2 -12 3260 2943 402 339 54 6 chr11 20119800 20119968 -128663504 + MIR SINE MIR 46 221 -41 866 270 26 17 chr11 20120660 20120893 -128662579 - MIR SINE MIR -14 248 14 446 278 16 0 chr11 20122266 20122392 -128661080 + MIR SINE MIR 113 240 -22 504 319 96 93 chr11 20122645 20122990 -128660482 + L2 LINE L2 2924 3269 -3 497 209 113 0 chr11 20123261 20123376 -128660096 - MIR SINE MIR -10 252 125 488 276 143 33 chr11 20123636 20123846 -128659626 + MIR SINE MIR 20 252 -10 466 169 12 0 chr11 20124844 20124927 -128658545 - MIR SINE MIR -58 150 67 316 389 0 0 chr11 20124918 20125044 -128658428 - MIR3 SINE MIR -1 207 82 * 1450 154 14 0 chr11 20125093 20125314 -128658158 + MER58A DNA MER1_type 1 224 0 658 312 86 33 chr11 20125592 20125802 -128657670 - MIR SINE MIR -28 234 17 203 256 78 101 chr11 20125881 20126010 -128657462 - L2 LINE L2 -9 3263 3138 2141 114 0 0 chr11 20126533 20126830 -128656642 + AluSx SINE Alu 1 297 -15 547 300 47 97 chr11 20126954 20127274 -128656198 + L2 LINE L2 2963 3266 -6 849 239 84 5 chr11 20127944 20128173 -128655299 + MIR SINE MIR 16 261 -1 859 205 95 24 chr11 20128340 20128550 -128654922 - MIR SINE MIR -3 259 35 347 320 140 11 chr11 20128642 20128820 -128654652 - MIR SINE MIR -15 247 47 338 248 215 0 chr11 20129654 20129775 -128653697 - MIR SINE MIR -24 238 92 515 293 47 14 chr11 20129814 20129889 -128653583 - MIR SINE MIR -31 231 160 2368 126 78 8 chr11 20129889 20130287 -128653185 - MSTB LTR MaLR 0 426 1 515 293 47 14 chr11 20130287 20130425 -128653047 - MIR SINE MIR -102 160 5 210 260 0 106 chr11 20130447 20130551 -128652921 + MIR3 SINE MIR 113 205 -3 187 200 0 91 chr11 20131087 20131142 -128652330 + MIR SINE MIR 63 112 -150 28 0 0 0 chr11 20131244 20131272 -128652200 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 20131360 20131382 -128652090 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 20131699 20131727 -128651745 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20131818 20131839 -128651633 + AT_rich Low_complexity Low_complexity 1 21 0 291 238 30 40 chr11 20131932 20132033 -128651439 + MIR SINE MIR 106 205 -57 268 246 0 31 chr11 20132724 20132789 -128650683 + L2 LINE L2 3198 3260 -12 275 340 50 28 chr11 20133516 20133657 -128649815 + MIR3 SINE MIR 43 186 -22 298 315 63 9 chr11 20133749 20133860 -128649612 + L2 LINE L2 2698 2814 -500 329 259 93 58 chr11 20134533 20134672 -128648800 + MIR3 SINE MIR 20 163 -45 * 858 256 94 13 chr11 20134670 20134904 -128648568 - MIR SINE MIR -1 261 9 623 196 165 0 chr11 20135214 20135372 -128648100 - L1ME3A LINE L1 -2 6168 5985 297 230 0 0 chr11 20135569 20135643 -128647829 + (TG)n Simple_repeat Simple_repeat 1 74 0 552 195 24 32 chr11 20136662 20136785 -128646687 - MER94 DNA DNA -11 123 2 490 323 101 5 chr11 20137357 20137555 -128645917 + MIR SINE MIR 46 262 0 346 269 27 81 chr11 20137603 20137752 -128645720 - MIR3 SINE MIR -32 176 36 189 180 0 0 chr11 20138002 20138052 -128645420 + (TG)n Simple_repeat Simple_repeat 2 51 0 472 237 128 26 chr11 20138379 20138535 -128644937 + MIR SINE MIR 21 192 -70 1025 231 25 33 chr11 20139348 20139590 -128643882 - MIR SINE MIR -21 241 2 380 236 91 18 chr11 20139596 20139706 -128643766 - MIR SINE MIR -74 188 71 291 335 78 22 chr11 20139956 20140135 -128643337 + L2 LINE L2 3125 3313 0 460 255 92 44 chr11 20140184 20140368 -128643104 - MIR SINE MIR -51 157 8 253 275 22 55 chr11 20141605 20141696 -128641776 + L2 LINE L2 3168 3255 -17 1622 165 4 0 chr11 20141714 20142027 -128641445 + AluJb SINE Alu 18 331 0 349 264 79 36 chr11 20142124 20142264 -128641208 - L1ME4a LINE L1 -41 6080 5935 36 23 0 0 chr11 20142306 20142349 -128641123 + AT_rich Low_complexity Low_complexity 1 43 0 498 237 50 29 chr11 20142996 20143135 -128640337 - MER5B DNA MER1_type -33 145 4 200 300 175 0 chr11 20143423 20143543 -128639929 + MIR SINE MIR 68 208 -54 713 286 26 30 chr11 20143635 20143866 -128639606 + MIR SINE MIR 32 261 -1 2485 46 3 0 chr11 20143931 20144238 -128639234 + AluY SINE Alu 1 308 -3 306 0 0 0 chr11 20144289 20144323 -128639149 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6888 122 65 20 chr11 20145970 20147146 -128636326 - Tigger3b DNA MER2_type 0 1231 2 237 65 0 0 chr11 20148100 20148131 -128635341 + (A)n Simple_repeat Simple_repeat 1 31 0 2368 68 0 16 chr11 20148461 20148770 -128634702 + AluY SINE Alu 1 304 -7 407 108 0 34 chr11 20148789 20149011 -128634461 + AluSp SINE Alu 37 301 -12 318 283 50 17 chr11 20149314 20149434 -128634038 - MER117 DNA MER1_type 0 197 74 558 250 160 0 chr11 20149470 20149626 -128633846 + MER5A DNA MER1_type 3 183 -6 889 156 102 12 chr11 20149673 20149840 -128633632 - MER5A DNA MER1_type -7 182 1 1496 186 39 24 chr11 20150445 20150783 -128632689 - MLT1A1 LTR MaLR -2 363 21 365 238 27 103 chr11 20150942 20151127 -128632345 - MIR SINE MIR 0 262 92 23 33 0 0 chr11 20151811 20151841 -128631631 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 20151979 20152002 -128631470 + GC_rich Low_complexity Low_complexity 1 23 0 26 88 0 0 chr11 20152085 20152153 -128631319 + GC_rich Low_complexity Low_complexity 1 68 0 201 250 0 0 chr11 20152374 20152418 -128631054 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr11 20152977 20153000 -128630472 + GC_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr11 20153806 20153829 -128629643 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 529 286 126 39 chr11 20155447 20155678 -128627794 + MIR SINE MIR 9 259 -3 718 244 97 8 chr11 20155994 20156232 -128627240 - MIR SINE MIR 0 262 4 281 204 0 0 chr11 20156257 20156306 -128627166 - tRNA-Thr-ACA tRNA tRNA -20 56 8 199 340 68 0 chr11 20156308 20156411 -128627061 - MIR SINE MIR -140 122 13 23 54 0 0 chr11 20157535 20157572 -128625900 + AT_rich Low_complexity Low_complexity 1 37 0 305 283 11 0 chr11 20157988 20158080 -128625392 + (TA)n Simple_repeat Simple_repeat 2 94 0 275 305 66 26 chr11 20158414 20158565 -128624907 - MIR SINE MIR -10 252 96 399 333 47 18 chr11 20158620 20158791 -128624681 + MIR SINE MIR 87 262 0 351 259 27 27 chr11 20159865 20159977 -128623495 - MIR SINE MIR 0 262 151 406 287 32 55 chr11 20160004 20160173 -128623299 + MIR SINE MIR 33 197 -55 269 319 35 26 chr11 20160222 20160335 -128623137 - MIR SINE MIR -131 131 18 1124 231 101 53 chr11 20160683 20161206 -128622266 + L1MC4 LINE L1 7494 8041 -1 32 43 0 0 chr11 20161493 20161539 -128621933 + AT_rich Low_complexity Low_complexity 1 46 0 398 322 148 30 chr11 20161649 20161879 -128621593 + L2 LINE L2 3015 3271 -1 379 223 52 128 chr11 20162439 20162650 -128620822 - MIR SINE MIR -55 207 13 524 313 12 0 chr11 20163268 20163431 -128620041 - MIR3 SINE MIR -6 202 38 877 147 33 0 chr11 20163563 20163713 -128619759 - FRAM SINE Alu -21 155 1 379 237 237 11 chr11 20163842 20164013 -128619459 - MIR SINE MIR -47 215 8 243 276 17 0 chr11 20164090 20164148 -128619324 + L2 LINE L2 3246 3304 -9 804 255 43 38 chr11 20164273 20164508 -128618964 - MIR SINE MIR -13 249 14 238 211 0 18 chr11 20164581 20164638 -128618834 - MIR SINE MIR -137 125 70 563 197 39 16 chr11 20165632 20165759 -128617713 + L2 LINE L2 2925 3054 -259 516 245 185 26 chr11 20165898 20166049 -128617423 + MER5A DNA MER1_type 12 186 -3 180 323 31 42 chr11 20167401 20167497 -128615975 + MIR3 SINE MIR 3 97 -111 267 281 101 0 chr11 20167562 20167651 -128615821 - MER5B DNA MER1_type -73 105 8 557 310 67 17 chr11 20167683 20167922 -128615550 + MIR SINE MIR 2 252 -10 570 319 11 21 chr11 20168172 20168363 -128615109 - MER5A DNA MER1_type 0 189 1 516 245 117 36 chr11 20169115 20169311 -128614161 - MIR SINE MIR -16 246 35 656 146 0 173 chr11 20170066 20170292 -128613180 - MER53 DNA DNA -2 187 1 463 303 42 35 chr11 20170581 20170723 -128612749 - L2 LINE L2 -19 3253 3111 303 291 33 93 chr11 20170843 20171025 -128612447 + MIR SINE MIR 34 204 -58 662 221 126 63 chr11 20171183 20171207 -128612265 + MIR SINE MIR 8 29 -233 1853 93 0 37 chr11 20171207 20171476 -128611996 + AluSx SINE Alu 40 298 -14 662 221 126 63 chr11 20171476 20171673 -128611799 + MIR SINE MIR 29 243 -19 289 255 162 6 chr11 20171710 20171831 -128611641 - MIR SINE MIR -72 136 42 474 320 73 23 chr11 20172411 20172630 -128610842 - MIR SINE MIR -19 243 14 231 215 62 0 chr11 20173015 20173080 -128610392 + (ATGGTG)n Simple_repeat Simple_repeat 3 71 0 708 247 6 6 chr11 20173080 20173238 -128610234 - MIR SINE MIR -2 260 103 636 290 107 13 chr11 20174123 20174347 -128609125 + MIR SINE MIR 7 251 -11 458 269 157 56 chr11 20174644 20174841 -128608631 - MIR SINE MIR -6 256 40 264 279 35 35 chr11 20175838 20175924 -128607548 - MIR SINE MIR -149 113 28 361 303 99 25 chr11 20176504 20176666 -128606806 - L2 LINE L2 -22 3250 3077 536 313 35 23 chr11 20176728 20176984 -128606488 + MIR SINE MIR 4 262 0 1312 158 0 5 chr11 20178183 20178398 -128605074 + AluJb SINE Alu 84 297 -15 493 253 147 11 chr11 20178464 20178654 -128604818 - MIR SINE MIR -12 250 35 261 301 11 11 chr11 20178831 20178924 -128604548 + MER102a DNA MER1_type 237 329 -1 189 293 73 24 chr11 20179392 20179474 -128603998 - L2 LINE L2 -255 3017 2932 2363 50 3 7 chr11 20179481 20179781 -128603691 + SVA Other Other 1088 1386 0 721 245 35 49 chr11 20179904 20180158 -128603314 - MIR SINE MIR 0 262 16 4382 138 22 106 chr11 20180351 20181335 -128602137 - L1MA9 LINE L1 -37 6275 5374 1032 219 26 22 chr11 20181390 20181618 -128601854 + MIR SINE MIR 20 248 -14 249 293 129 10 chr11 20182234 20182401 -128601071 + MIR3 SINE MIR 5 149 -59 552 273 127 10 chr11 20183200 20183405 -128600067 - MIR SINE MIR -14 248 20 326 284 90 40 chr11 20184072 20184273 -128599199 - L1MC/D LINE L1 -2044 5764 5554 624 178 178 6 chr11 20184487 20184650 -128598822 + ORSL DNA AcHobo 84 274 -1 2336 123 9 6 chr11 20184785 20185119 -128598353 - MER1B DNA MER1_type -2 335 1 327 211 11 74 chr11 20185229 20185324 -128598148 - MIR SINE MIR -111 151 63 3478 43 0 2 chr11 20186096 20186513 -128596959 - L1PA4 LINE L1 -3 6152 5737 390 243 112 33 chr11 20186513 20186665 -128596807 - MIR SINE MIR -19 243 80 181 297 47 0 chr11 20187445 20187509 -128595963 - MIR SINE MIR -96 166 100 259 282 224 0 chr11 20187635 20187720 -128595752 + MIR SINE MIR 48 151 -111 465 304 35 0 chr11 20187725 20187840 -128595632 + L2 LINE L2 3154 3272 0 198 279 101 38 chr11 20187845 20187924 -128595548 + MIR SINE MIR 172 255 -7 362 301 49 24 chr11 20188088 20188211 -128595261 - MIR3 SINE MIR -76 132 7 394 320 75 0 chr11 20189816 20189963 -128593509 - MIR3 SINE MIR -9 199 42 820 261 66 33 chr11 20190050 20190171 -128593301 - MIR SINE MIR -12 250 134 959 191 48 52 chr11 20190171 20190381 -128593091 - MER63A DNA MER1_type 0 210 2 820 261 66 33 chr11 20190381 20190500 -128592972 - MIR SINE MIR -128 134 2 812 291 169 0 chr11 20190679 20191023 -128592449 + L2 LINE L2 2863 3264 -49 299 218 23 23 chr11 20191663 20191750 -128591722 - L1ME4a LINE L1 -71 6050 5964 474 288 66 20 chr11 20191765 20191963 -128591509 - L1ME4a LINE L1 -212 5909 5703 1688 197 41 19 chr11 20192041 20192407 -128591065 + MLT1A2 LTR MaLR 1 374 0 276 182 0 0 chr11 20192469 20192524 -128590948 + L2 LINE L2 2920 2974 -298 230 146 0 0 chr11 20192581 20192622 -128590850 + HsTC2 DNA Tc2 26 66 -1832 224 296 63 101 chr11 20192723 20192882 -128590590 + L2 LINE L2 3068 3220 -52 195 269 203 11 chr11 20193547 20193729 -128589743 - L2 LINE L2 -189 3083 2867 356 260 127 27 chr11 20194379 20194529 -128588943 - MIR SINE MIR -57 205 41 1530 204 19 22 chr11 20194622 20194935 -128588537 - MLT1C LTR MaLR 0 467 156 2010 156 26 164 chr11 20194953 20195484 -128587988 - LTR32 LTR ERVL 0 471 14 524 194 97 8 chr11 20195483 20195607 -128587865 - MLT1C LTR MaLR -327 140 6 * 264 59 0 0 chr11 20196196 20196230 -128587242 + (GGCTG)n Simple_repeat Simple_repeat 1 34 0 409 225 0 34 chr11 20196684 20196773 -128586699 + MIR SINE MIR 65 150 -112 813 260 53 13 chr11 20196894 20197145 -128586327 - MIR SINE MIR 0 262 13 218 238 131 24 chr11 20197252 20197336 -128586136 - MIR SINE MIR -64 198 106 418 273 234 22 chr11 20197348 20197703 -128585769 - L2 LINE L2 -20 3293 2864 2122 69 55 3 chr11 20198292 20198583 -128584889 - AluY SINE Alu -4 307 2 199 257 43 29 chr11 20198586 20198656 -128584816 - MIR3 SINE MIR -24 184 114 651 295 33 33 chr11 20198799 20199040 -128584432 + MIR SINE MIR 22 262 0 899 287 124 27 chr11 20200406 20200810 -128582662 - L2 LINE L2 0 3313 2871 593 328 110 58 chr11 20200961 20201162 -128582310 + L2 LINE L2 2469 2658 -655 2010 125 0 3 chr11 20201162 20201466 -128582006 + AluSx SINE Alu 1 303 -9 593 328 110 58 chr11 20201466 20201811 -128581661 + L2 LINE L2 2658 2983 -330 2231 116 0 0 chr11 20201811 20202114 -128581358 - AluSc SINE Alu -6 303 1 593 328 110 58 chr11 20202114 20202364 -128581108 + L2 LINE L2 2983 3312 -1 222 136 0 0 chr11 20202978 20203022 -128580450 + (T)n Simple_repeat Simple_repeat 1 44 0 216 200 11 89 chr11 20203736 20203826 -128579646 + MIR SINE MIR 123 205 -57 1059 277 80 58 chr11 20203935 20204434 -128579038 + L2 LINE L2 2302 2811 -503 308 160 0 0 chr11 20204434 20204484 -128578988 - MER58 DNA MER1_type -1 2419 2370 341 201 7 45 chr11 20204628 20204782 -128578690 + CT-rich Low_complexity Low_complexity 1 148 0 433 232 9 64 chr11 20204787 20204913 -128578559 - MER58 DNA MER1_type -115 100 1 788 287 86 41 chr11 20204915 20205403 -128578069 + L2 LINE L2 2804 3313 0 31 0 0 0 chr11 20205423 20205454 -128578018 + AT_rich Low_complexity Low_complexity 1 31 0 344 277 118 56 chr11 20206644 20206825 -128576647 + MIR SINE MIR 24 212 -50 658 342 30 0 chr11 20206899 20207130 -128576342 - MIR SINE MIR -3 259 22 379 301 139 5 chr11 20207738 20207947 -128575525 + L3 LINE CR1 1083 1319 -258 542 313 57 9 chr11 20207988 20208199 -128575273 + MIR SINE MIR 9 229 -33 331 355 16 16 chr11 20208254 20208378 -128575094 + MIR SINE MIR 22 145 -63 28 29 0 0 chr11 20209553 20209588 -128573884 + AT_rich Low_complexity Low_complexity 1 35 0 301 223 43 53 chr11 20210339 20210433 -128573039 + MIR3 SINE MIR 111 203 -5 181 372 77 0 chr11 20210446 20210524 -128572948 - L2 LINE L2 -40 3232 3149 239 325 7 22 chr11 20210701 20210834 -128572638 - L2 LINE L2 -248 3024 2896 180 0 0 0 chr11 20211122 20211142 -128572330 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 214 311 168 31 chr11 20212276 20212437 -128571035 - MIR3 SINE MIR -15 193 11 193 371 57 17 chr11 20213090 20213265 -128570207 + L2 LINE L2 2558 2739 -575 236 329 0 0 chr11 20213345 20213430 -128570042 + L2 LINE L2 2904 2988 -284 1669 167 4 4 chr11 20213518 20213793 -128569679 - AluJo SINE Alu -37 275 1 23 0 0 0 chr11 20214498 20214521 -128568951 + AT_rich Low_complexity Low_complexity 1 23 0 838 274 160 30 chr11 20214788 20215323 -128568149 - L2 LINE L2 -5 3308 2692 472 111 20 0 chr11 20215894 20215993 -128567479 + (TG)n Simple_repeat Simple_repeat 1 101 0 24 67 0 0 chr11 20216402 20216447 -128567025 + GC_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr11 20216601 20216642 -128566830 + GC_rich Low_complexity Low_complexity 1 41 0 313 327 140 0 chr11 20217611 20217761 -128565711 + MIR SINE MIR 92 262 0 304 40 40 0 chr11 20217810 20217860 -128565612 + (CAAAAA)n Simple_repeat Simple_repeat 1 52 0 194 188 0 0 chr11 20218879 20218911 -128564561 + MIR SINE MIR 48 79 -183 319 271 83 36 chr11 20219825 20220073 -128563399 + MIR3 SINE MIR 1 258 -4 315 340 95 0 chr11 20220117 20220192 -128563280 + L1ME4a LINE L1 5960 6026 -95 248 0 31 0 chr11 20220192 20220224 -128563248 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 315 340 95 0 chr11 20220224 20220295 -128563177 + L1ME4a LINE L1 6026 6120 -1 629 246 120 0 chr11 20220322 20220489 -128562983 - MIR SINE MIR -2 260 74 789 139 0 0 chr11 20221093 20221222 -128562250 - L1MA9 LINE L1 -5 6307 6179 668 278 65 37 chr11 20222922 20223167 -128560305 + MIR SINE MIR 11 262 0 266 270 153 31 chr11 20223223 20223419 -128560053 - L2 LINE L2 -52 3261 3042 479 123 0 0 chr11 20223424 20223489 -128559983 + AluS SINE Alu 2 66 -247 781 237 116 5 chr11 20223704 20223911 -128559561 + MIR SINE MIR 19 248 -14 189 0 0 0 chr11 20223914 20223935 -128559537 + (CAT)n Simple_repeat Simple_repeat 3 23 0 252 333 33 25 chr11 20224195 20224315 -128559157 - MIR3 SINE MIR -7 201 81 213 305 17 0 chr11 20225399 20225458 -128558014 + L2 LINE L2 3235 3294 -19 784 177 0 109 chr11 20225879 20226071 -128557401 + FAM SINE Alu 4 174 -1 1543 164 0 77 chr11 20226122 20226446 -128557026 - AluJo SINE Alu -11 301 3 270 302 70 0 chr11 20226578 20226664 -128556808 + MIR SINE MIR 84 175 -87 833 310 162 29 chr11 20227062 20227151 -128556321 + L2 LINE L2 2323 2399 -873 1018 195 37 19 chr11 20227151 20227366 -128556106 - MER20 DNA MER1_type 0 219 1 833 310 162 29 chr11 20227366 20228117 -128555355 + L2 LINE L2 2399 3272 0 243 294 0 47 chr11 20228231 20228316 -128555156 + L2 LINE L2 3233 3313 0 235 263 0 18 chr11 20228531 20228588 -128554884 + L2 LINE L2 3216 3271 -1 432 248 33 33 chr11 20229279 20229400 -128554072 - MIR3 SINE MIR -3 205 85 203 262 0 33 chr11 20229525 20229586 -128553886 + MIR SINE MIR 204 262 0 409 288 135 6 chr11 20229592 20229755 -128553717 + MIR SINE MIR 67 250 -12 911 246 43 17 chr11 20229954 20230208 -128553264 - MIR SINE MIR -10 252 1 2247 103 7 0 chr11 20231959 20232269 -128551203 + AluSx SINE Alu 1 312 0 604 305 124 33 chr11 20232553 20233216 -128550256 + L2 LINE L2 2551 3313 0 210 398 11 0 chr11 20234040 20234128 -128549344 - MIR SINE MIR -90 172 84 543 250 69 5 chr11 20234343 20234547 -128548925 + MER113 DNA MER1_type? 1 217 -304 248 215 28 93 chr11 20235152 20235259 -128548213 - LTR33A LTR ERVL -20 503 404 324 293 162 59 chr11 20235458 20235680 -128547792 - MIR SINE MIR -14 248 4 418 276 77 46 chr11 20236705 20236901 -128546571 + MIR SINE MIR 7 208 -54 308 289 206 39 chr11 20237692 20237872 -128545600 - MIR SINE MIR -33 229 20 405 167 0 0 chr11 20239705 20239783 -128543689 + (TG)n Simple_repeat Simple_repeat 2 79 0 858 262 34 9 chr11 20240715 20240948 -128542524 + MIR SINE MIR 9 247 -15 455 309 216 24 chr11 20241011 20241386 -128542086 + L3 LINE CR1 1128 1574 -3 805 126 0 0 chr11 20241644 20241763 -128541709 + FRAM SINE Alu 49 167 -9 425 222 51 8 chr11 20242528 20242645 -128540827 + MIR SINE MIR 84 205 -57 210 118 0 0 chr11 20243677 20243711 -128539761 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 246 264 94 0 chr11 20243937 20244043 -128539429 - L2 LINE L2 -324 2948 2833 385 281 22 30 chr11 20244815 20244950 -128538522 - MIR SINE MIR -78 184 51 318 356 53 0 chr11 20245550 20245682 -128537790 + MIR SINE MIR 9 147 -115 342 263 39 38 chr11 20245937 20246094 -128537378 + MER5A DNA MER1_type 12 182 -7 395 248 206 7 chr11 20247072 20247213 -128536259 + MIR SINE MIR 77 245 -17 22 35 0 0 chr11 20247554 20247583 -128535889 + AT_rich Low_complexity Low_complexity 1 29 0 214 250 0 0 chr11 20248408 20248452 -128535020 + MER5B DNA MER1_type 5 48 -130 5336 160 90 52 chr11 20248464 20249742 -128533730 - L1MC3 LINE L1 0 7785 6460 318 267 124 29 chr11 20249976 20250081 -128533391 + L2 LINE L2 3155 3269 -3 368 238 0 12 chr11 20250874 20250954 -128532518 - L2 LINE L2 -12 3301 3223 287 250 16 0 chr11 20251001 20251065 -128532407 - MER5A DNA MER1_type -1 188 124 663 169 0 66 chr11 20251159 20251295 -128532177 - MER5A DNA MER1_type -54 135 9 460 288 122 56 chr11 20251286 20251606 -128531866 + L2 LINE L2 2972 3312 -1 * 761 181 0 8 chr11 20253665 20253798 -128529674 - FLAM_A SINE Alu 0 133 2 186 306 134 59 chr11 20254710 20254896 -128528576 + MIR SINE MIR 42 241 -21 405 250 40 32 chr11 20255533 20255657 -128527815 - MIR SINE MIR -44 218 94 279 0 0 0 chr11 20257266 20257297 -128526175 + (T)n Simple_repeat Simple_repeat 1 31 0 1766 197 82 8 chr11 20257325 20257715 -128525757 + MER63B DNA MER1_type 18 436 0 352 345 23 0 chr11 20257938 20258112 -128525360 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 272 285 80 15 chr11 20258323 20258460 -128525012 - L2 LINE L2 -216 3056 2911 382 248 118 19 chr11 20258712 20258873 -128524599 - MIR SINE MIR -6 256 80 303 262 71 0 chr11 20259676 20259760 -128523712 + MIR SINE MIR 64 153 -109 294 281 0 0 chr11 20259756 20259820 -128523652 - L2 LINE L2 -2 3311 3248 * 2552 46 0 0 chr11 20260015 20260317 -128523155 + AluY SINE Alu 1 302 -9 504 261 119 17 chr11 20260956 20261132 -128522340 + MIR SINE MIR 35 228 -34 378 266 184 37 chr11 20261151 20261369 -128522103 - MIR SINE MIR 0 262 13 1779 149 10 3 chr11 20262092 20262246 -128521226 - AluJb SINE Alu -22 290 132 2002 132 0 0 chr11 20262246 20262542 -128520930 - AluSq SINE Alu -17 296 1 1779 149 10 3 chr11 20262542 20262675 -128520797 - AluJb SINE Alu -180 132 1 1242 77 48 0 chr11 20262791 20262959 -128520513 + L1PA7 LINE L1 5979 6154 0 469 268 147 21 chr11 20263132 20263322 -128520150 - MIR SINE MIR -2 260 47 210 274 69 49 chr11 20263533 20263635 -128519837 + MIR SINE MIR 80 183 -79 2249 106 3 0 chr11 20264045 20264356 -128519116 + AluSx SINE Alu 1 312 0 5845 57 22 46 chr11 20265750 20267026 -128516446 - SVA Other Other -520 866 5 234 0 0 0 chr11 20267055 20267081 -128516391 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 404 317 124 16 chr11 20267438 20267624 -128515848 - MIR SINE MIR -34 228 23 219 330 90 50 chr11 20269256 20269456 -128514016 + L2 LINE L2 2837 3044 -228 * 443 219 26 35 chr11 20269441 20269555 -128513917 - L2 LINE L2 0 3313 3201 551 288 15 8 chr11 20269732 20269864 -128513608 + L2 LINE L2 3140 3272 0 257 248 46 46 chr11 20271911 20272020 -128511452 + MIR SINE MIR 31 139 -69 180 244 22 0 chr11 20272062 20272107 -128511365 + L2 LINE L2 3227 3272 0 981 182 22 11 chr11 20272128 20272309 -128511163 - MER20 DNA MER1_type 0 219 37 28 0 0 0 chr11 20272935 20272963 -128510509 + AT_rich Low_complexity Low_complexity 1 28 0 201 221 70 58 chr11 20273283 20273369 -128510103 + MIR SINE MIR 48 134 -74 491 326 72 23 chr11 20276584 20276805 -128506667 - MIR SINE MIR -6 256 25 677 250 0 7 chr11 20278172 20278320 -128505152 - MIR SINE MIR -13 249 103 470 330 95 25 chr11 20279090 20279405 -128504067 - L2 LINE L2 0 3272 2936 234 239 188 26 chr11 20280285 20280402 -128503070 + MIR3 SINE MIR 6 141 -67 1294 182 182 36 chr11 20280699 20280828 -128502644 + L1MB7 LINE L1 5744 5853 -331 1993 142 0 0 chr11 20280828 20281123 -128502349 + AluSx SINE Alu 1 295 -17 1294 182 182 36 chr11 20281123 20281144 -128502328 + L1MB7 LINE L1 5853 5870 -314 2417 124 34 0 chr11 20281144 20281498 -128501974 - MER47A DNA MER2_type 0 366 1 1294 182 182 36 chr11 20281498 20281730 -128501742 + L1MB7 LINE L1 5870 6183 -1 1971 103 0 11 chr11 20281967 20282279 -128501193 - AluSc SINE Alu 0 309 1 385 293 36 48 chr11 20282291 20282458 -128501014 - MIR SINE MIR -66 196 32 186 43 0 0 chr11 20282837 20282860 -128500612 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 207 206 16 0 chr11 20282874 20282937 -128500535 + (TA)n Simple_repeat Simple_repeat 1 64 0 25 0 0 0 chr11 20282965 20282990 -128500482 + AT_rich Low_complexity Low_complexity 1 25 0 672 273 150 0 chr11 20283019 20283239 -128500233 + MIR SINE MIR 10 262 0 2494 56 0 0 chr11 20283421 20283725 -128499747 - AluY SINE Alu -7 304 1 401 278 90 14 chr11 20283730 20283874 -128499598 + MIR3 SINE MIR 47 201 -7 318 257 29 73 chr11 20284067 20284203 -128499269 - MER94 DNA DNA -4 130 1 427 290 126 67 chr11 20284279 20284517 -128498955 - MIR SINE MIR -1 261 10 180 97 0 0 chr11 20285882 20285913 -128497559 + (CAG)n Simple_repeat Simple_repeat 2 32 0 485 308 156 12 chr11 20287554 20287804 -128495668 - L2 LINE L2 0 3313 3028 837 361 58 5 chr11 20287996 20288392 -128495080 - L2 LINE L2 -523 2791 2375 225 0 0 0 chr11 20290735 20290760 -128492712 + (TTG)n Simple_repeat Simple_repeat 2 26 0 653 251 126 13 chr11 20291061 20291292 -128492180 - MIR SINE MIR -3 259 3 323 119 0 68 chr11 20291856 20291915 -128491557 - AluJo SINE Alu -4 298 244 1202 174 58 0 chr11 20292002 20292226 -128491246 - AluJo SINE Alu -69 243 7 469 274 125 6 chr11 20293336 20293504 -128489968 + MIR SINE MIR 8 195 -67 26 0 0 0 chr11 20293511 20293537 -128489935 + AT_rich Low_complexity Low_complexity 1 26 0 214 279 116 17 chr11 20294579 20294751 -128488721 + L2 LINE L2 2773 2961 -353 205 299 0 0 chr11 20296120 20296187 -128487285 - MIR SINE MIR -109 153 87 180 0 0 0 chr11 20297912 20297932 -128485540 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1288 152 0 0 chr11 20297935 20298119 -128485353 - AluSg/x SINE Alu -34 278 95 207 254 17 17 chr11 20299752 20299811 -128483661 + CT-rich Low_complexity Low_complexity 3 61 0 243 170 0 0 chr11 20299969 20300016 -128483456 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 414 250 38 23 chr11 20300079 20300211 -128483261 - MIR SINE MIR -104 158 25 2364 78 3 0 chr11 20300690 20300984 -128482488 - AluSq SINE Alu -18 295 1 1450 130 160 37 chr11 20301023 20301331 -128482141 - AluSx SINE Alu 0 341 1 303 288 120 0 chr11 20301350 20301475 -128481997 - MIR SINE MIR -76 186 47 1338 169 46 11 chr11 20302130 20302391 -128481081 - L1MB2 LINE L1 -11 6160 5891 363 126 0 13 chr11 20302526 20302593 -128480879 - L1MB3 LINE L1 -296 5887 5825 5304 23 5 2 chr11 20302737 20303347 -128480125 + L1PA4 LINE L1 5543 6154 -1 22 0 0 0 chr11 20303838 20303860 -128479612 + AT_rich Low_complexity Low_complexity 1 22 0 759 238 117 92 chr11 20304181 20304769 -128478703 - L1MC4a LINE L1 -27 6094 5492 287 323 132 34 chr11 20305469 20305704 -128477768 - L2 LINE L2 0 3272 3015 209 329 13 0 chr11 20306313 20306389 -128477083 + MIR SINE MIR 24 100 -162 240 357 83 24 chr11 20307004 20307172 -128476300 + MER5A DNA MER1_type 8 185 -4 1968 136 0 0 chr11 20307220 20307492 -128475980 + AluSx SINE Alu 2 273 -39 250 278 44 22 chr11 20307534 20307624 -128475848 + MIR SINE MIR 159 250 -12 516 283 67 6 chr11 20310202 20310382 -128473090 - L2 LINE L2 -18 3295 3105 648 278 22 40 chr11 20310650 20310877 -128472595 + L3 LINE CR1 1342 1564 -13 1477 243 73 10 chr11 20312027 20312422 -128471050 - MLT1H LTR MaLR -129 420 1 433 341 12 0 chr11 20312899 20313063 -128470409 + MIR SINE MIR 27 192 -70 948 165 60 15 chr11 20314442 20314642 -128468830 + MER3 DNA MER1_type 1 209 0 1368 137 68 45 chr11 20314711 20315003 -128468469 + L1MB7 LINE L1 5886 6184 0 457 294 64 43 chr11 20315976 20316211 -128467261 - MIR SINE MIR -17 245 6 213 333 0 13 chr11 20316239 20316314 -128467158 - L2 LINE L2 -18 3295 3222 2151 112 7 10 chr11 20316532 20316836 -128466636 + AluSx SINE Alu 1 303 -9 261 328 134 18 chr11 20317205 20317376 -128466096 - L2 LINE L2 -185 3087 2897 210 277 0 0 chr11 20317455 20317502 -128465970 + L2 LINE L2 3150 3196 -76 184 304 14 14 chr11 20317533 20317602 -128465870 - MIR3 SINE MIR -134 74 6 284 238 114 19 chr11 20319599 20319704 -128463768 + MIR SINE MIR 17 131 -77 733 262 30 35 chr11 20319942 20320144 -128463328 - MER63A DNA MER1_type 0 210 10 2893 7 0 0 chr11 20320493 20320799 -128462673 - AluYb8 SINE Alu -12 306 1 204 200 0 0 chr11 20320912 20320957 -128462515 + CT-rich Low_complexity Low_complexity 3 47 0 431 319 57 60 chr11 20321487 20321822 -128461650 + L2 LINE L2 2931 3264 -8 785 230 133 0 chr11 20321861 20322087 -128461385 + MIR SINE MIR 5 260 -2 552 245 15 2 chr11 20322627 20322811 -128460661 - MER58A DNA MER1_type 0 224 5 2172 97 10 17 chr11 20323573 20323872 -128459600 - AluSx SINE Alu -15 297 1 345 283 9 0 chr11 20323940 20324046 -128459426 + MIR SINE MIR 47 153 -109 204 273 0 0 chr11 20324924 20324968 -128458504 + L2 LINE L2 3232 3275 -38 2047 136 3 3 chr11 20325807 20326101 -128457371 + AluJb SINE Alu 1 294 -18 394 257 63 48 chr11 20326117 20326251 -128457221 + MIR SINE MIR 52 192 -70 2106 110 3 3 chr11 20326251 20326542 -128456930 - AluSg SINE Alu -19 291 1 394 257 63 48 chr11 20326542 20326613 -128456859 + MIR SINE MIR 192 260 -2 609 236 28 11 chr11 20327671 20327849 -128455623 + MIR SINE MIR 81 261 -1 418 288 7 29 chr11 20328446 20328585 -128454887 - MER5A DNA MER1_type -3 186 51 335 341 18 6 chr11 20328582 20328749 -128454723 + MIR3 SINE MIR 40 208 0 * 339 387 0 0 chr11 20328745 20328887 -128454585 - L3 LINE CR1 -506 1071 930 501 231 18 47 chr11 20329238 20329407 -128454065 - MER103 DNA DNA 0 166 3 201 39 0 0 chr11 20330251 20330277 -128453195 + (A)n Simple_repeat Simple_repeat 1 26 0 3324 203 43 17 chr11 20330917 20331424 -128452048 - L1M4 LINE L1 -690 5484 4954 2348 107 3 0 chr11 20331424 20331723 -128451749 + AluSg SINE Alu 1 300 -10 3324 203 43 17 chr11 20331723 20332106 -128451366 - L1M4 LINE L1 -1220 4954 4583 180 77 0 0 chr11 20332593 20332619 -128450853 + (A)n Simple_repeat Simple_repeat 1 26 0 2092 106 58 0 chr11 20333255 20333547 -128449925 + AluSq SINE Alu 1 309 -4 411 133 0 0 chr11 20333581 20333641 -128449831 + AluS SINE Alu 220 279 -31 266 0 29 0 chr11 20333644 20333678 -128449794 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 307 210 156 70 chr11 20333681 20333867 -128449605 - MER112 DNA MER1_type -57 203 2 284 243 63 18 chr11 20334093 20334204 -128449268 + MER113 DNA MER1_type? 1 116 -405 290 323 65 0 chr11 20334686 20334810 -128448662 - MIR3 SINE MIR -13 195 64 1707 141 53 47 chr11 20334928 20335227 -128448245 + AluSx SINE Alu 1 301 -11 213 302 63 107 chr11 20335858 20336063 -128447409 + L2 LINE L2 3027 3222 -50 529 236 52 35 chr11 20336469 20336643 -128446829 + L2 LINE L2 3118 3294 -19 329 257 37 37 chr11 20336965 20337074 -128446398 + MIR SINE MIR 39 147 -61 321 89 0 0 chr11 20338192 20338237 -128445235 + (A)n Simple_repeat Simple_repeat 1 45 0 2099 113 58 0 chr11 20338283 20338574 -128444898 - AluSx SINE Alu -4 308 1 219 222 0 48 chr11 20339646 20339709 -128443763 + GA-rich Low_complexity Low_complexity 4 63 0 24 0 0 0 chr11 20340623 20340647 -128442825 + AT_rich Low_complexity Low_complexity 1 24 0 2066 130 0 34 chr11 20341802 20342125 -128441347 - AluSx SINE Alu 0 312 1 219 261 222 68 chr11 20342679 20342812 -128440660 - MIR SINE MIR -48 214 46 2134 123 7 0 chr11 20342812 20343112 -128440360 + AluSx SINE Alu 1 302 -10 219 261 222 68 chr11 20343112 20343154 -128440318 - MIR SINE MIR -216 46 12 215 180 90 130 chr11 20343165 20343265 -128440207 + MIR3 SINE MIR 98 193 -15 350 321 14 42 chr11 20343487 20343660 -128439812 - MIR SINE MIR -62 146 19 552 295 62 21 chr11 20344270 20344595 -128438877 - MER102b DNA MER1_type -2 339 2 286 244 24 24 chr11 20345859 20345941 -128437531 + CT-rich Low_complexity Low_complexity 4 85 0 28 0 0 0 chr11 20346210 20346238 -128437234 + AT_rich Low_complexity Low_complexity 1 28 0 282 288 110 21 chr11 20347650 20347841 -128435631 - L3 LINE CR1 -69 1508 1301 320 268 126 31 chr11 20348371 20348498 -128434974 - MIR SINE MIR -71 191 53 1808 155 14 7 chr11 20348661 20348951 -128434521 + AluJo SINE Alu 3 294 -18 21 36 0 0 chr11 20349791 20349819 -128433653 + AT_rich Low_complexity Low_complexity 1 28 0 2187 95 0 11 chr11 20349872 20350180 -128433292 + AluSx SINE Alu 1 305 0 641 103 5 82 chr11 20350363 20350557 -128432915 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 536 189 5 43 chr11 20350549 20350734 -128432738 + CT-rich Low_complexity Low_complexity 3 180 0 * 356 125 0 38 chr11 20350745 20350825 -128432647 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 647 85 40 57 chr11 20350826 20351003 -128432469 + CT-rich Low_complexity Low_complexity 5 178 0 259 315 102 0 chr11 20351349 20351457 -128432015 - L2 LINE L2 0 3272 3154 2079 107 24 30 chr11 20353176 20353474 -128429998 - AluSc SINE Alu -13 296 1 532 305 119 40 chr11 20354490 20354962 -128428510 + L2 LINE L2 2804 3312 -1 234 315 37 9 chr11 20354982 20355090 -128428382 + MIR3 SINE MIR 93 203 -5 211 287 75 21 chr11 20355157 20355251 -128428221 + MIR3 SINE MIR 96 194 -14 22 0 0 0 chr11 20355344 20355366 -128428106 + AT_rich Low_complexity Low_complexity 1 22 0 675 251 6 12 chr11 20355376 20355547 -128427925 - MIR SINE MIR -29 233 64 3909 128 63 3 chr11 20355774 20356390 -128427082 - MER39B LTR ERV1 0 653 1 222 278 19 65 chr11 20357337 20357445 -128426027 + MIR SINE MIR 19 121 -87 207 268 146 12 chr11 20358803 20358885 -128424587 + MIR SINE MIR 20 112 -150 216 0 0 0 chr11 20358956 20358980 -128424492 + (TG)n Simple_repeat Simple_repeat 2 25 0 1383 149 0 0 chr11 20359511 20359719 -128423753 + MER2 DNA MER2_type 2 209 -136 366 222 0 0 chr11 20359926 20360016 -128423456 + (TG)n Simple_repeat Simple_repeat 2 91 0 260 89 0 0 chr11 20360016 20360061 -128423411 + LTR66 LTR ERVL 394 438 -172 323 240 16 74 chr11 20360115 20360222 -128423250 + L2 LINE L2 3197 3298 -15 1513 199 61 0 chr11 20360222 20360499 -128422973 + AluJb SINE Alu 1 294 -18 323 240 16 74 chr11 20360499 20360512 -128422960 + L2 LINE L2 3298 3310 -3 2669 238 37 66 chr11 20361304 20361455 -128422017 - MER21B LTR ERV1 -69 794 640 321 26 0 0 chr11 20361455 20361493 -128421979 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 40 0 0 chr11 20361494 20361519 -128421953 + (TC)n Simple_repeat Simple_repeat 1 25 0 2669 238 37 66 chr11 20361519 20362183 -128421289 - MER21B LTR ERV1 -222 641 1 601 209 67 107 chr11 20363275 20363500 -128419972 - MER58A DNA MER1_type -8 216 1 37 0 0 0 chr11 20363723 20363760 -128419712 + AT_rich Low_complexity Low_complexity 1 37 0 978 154 24 172 chr11 20363854 20364192 -128419280 + AluJo SINE Alu 3 290 -12 1865 141 36 19 chr11 20364208 20364569 -128418903 - L1MB4 LINE L1 -10 6170 5804 1159 155 5 5 chr11 20364569 20364756 -128418716 - AluJb SINE Alu -63 249 63 387 244 126 0 chr11 20365537 20365672 -128417800 - MIR SINE MIR -2 260 109 430 294 24 0 chr11 20365821 20365947 -128417525 - MIR SINE MIR -77 185 57 2325 112 0 0 chr11 20365973 20366277 -128417195 + AluSg SINE Alu 1 304 -6 838 230 77 0 chr11 20366427 20366623 -128416849 + MIR SINE MIR 46 256 -6 276 221 0 133 chr11 20366625 20366738 -128416734 - L2 LINE L2 -19 3294 3197 255 279 0 0 chr11 20369583 20369610 -128413862 + CT-rich Low_complexity Low_complexity 1 27 -41 2704 222 42 14 chr11 20369610 20370187 -128413285 - MLT1E LTR MaLR 0 593 1 255 279 0 0 chr11 20370187 20370227 -128413245 + CT-rich Low_complexity Low_complexity 26 68 0 460 298 111 0 chr11 20370230 20370428 -128413044 - MIR SINE MIR -42 220 1 405 250 66 22 chr11 20370974 20371110 -128412362 + MER117 DNA MER1_type 46 187 -10 281 207 12 0 chr11 20371675 20371757 -128411715 + (TA)n Simple_repeat Simple_repeat 2 84 0 26 74 0 0 chr11 20371768 20371822 -128411650 + AT_rich Low_complexity Low_complexity 1 54 0 371 333 75 0 chr11 20372269 20372305 -128411167 - L3 LINE CR1 -17 1560 1528 2868 13 0 0 chr11 20372305 20372611 -128410861 + AluYb8 SINE Alu 1 306 -12 371 333 75 0 chr11 20372611 20372748 -128410724 - L3 LINE CR1 -49 1528 1374 2017 187 17 3 chr11 20372749 20373107 -128410365 - MLT1A1 LTR MaLR -2 363 1 2844 239 89 25 chr11 20373172 20374174 -128409298 + L1MC4 LINE L1 6977 8042 0 226 368 37 0 chr11 20374365 20374501 -128408971 - L2 LINE L2 -217 3055 2915 2117 139 3 0 chr11 20374651 20374952 -128408520 - AluSx SINE Alu -10 302 1 250 343 4 27 chr11 20375321 20375464 -128408008 + GA-rich Low_complexity Low_complexity 1 139 0 203 143 29 0 chr11 20375597 20375632 -128407840 + MIR SINE MIR 83 118 -90 23 0 0 0 chr11 20376172 20376195 -128407277 + AT_rich Low_complexity Low_complexity 1 23 0 515 252 0 8 chr11 20376857 20376976 -128406496 - L2 LINE L2 -5 3308 3191 706 291 42 8 chr11 20377865 20378106 -128405366 - MIR SINE MIR -7 255 7 1042 171 151 0 chr11 20380479 20380684 -128402788 - MER46A DNA MER2_type 0 236 1 202 140 0 60 chr11 20380817 20380867 -128402605 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 286 258 83 33 chr11 20381888 20382008 -128401464 - L2 LINE L2 -6 3266 3141 416 260 87 13 chr11 20383552 20383702 -128399770 + MIR SINE MIR 37 197 -65 353 260 16 55 chr11 20383744 20383871 -128399601 - MIR SINE MIR -4 258 137 304 328 8 16 chr11 20384625 20384750 -128398722 + MIR SINE MIR 136 259 -3 213 336 65 0 chr11 20384963 20385070 -128398402 + MIR SINE MIR 85 198 -64 * 454 309 105 9 chr11 20385057 20385267 -128398205 - MIR SINE MIR -2 260 31 338 259 0 36 chr11 20386833 20386945 -128396527 - MIR SINE MIR -38 224 117 915 240 9 5 chr11 20387090 20387311 -128396161 - MIR SINE MIR -38 224 3 402 216 151 14 chr11 20387467 20387606 -128395866 + MIR SINE MIR 23 180 -82 2802 138 40 33 chr11 20387777 20388257 -128395215 + MLT1D LTR MaLR 23 505 0 201 313 15 15 chr11 20388778 20388845 -128394627 + L2 LINE L2 3200 3266 -6 746 237 30 0 chr11 20389097 20389266 -128394206 - MER5A DNA MER1_type -5 184 11 1344 135 45 9 chr11 20389429 20389651 -128393821 - MER30 DNA MER1_type 0 230 1 224 271 169 25 chr11 20389844 20389962 -128393510 + L2 LINE L2 3134 3268 -4 459 165 82 135 chr11 20390511 20390681 -128392791 + MER102a DNA MER1_type 169 329 -1 404 228 61 83 chr11 20391053 20391233 -128392239 + MIR SINE MIR 49 224 -38 302 209 0 15 chr11 20391297 20391364 -128392108 - MIR SINE MIR -109 153 88 459 145 0 0 chr11 20392054 20392130 -128391342 + MER116 DNA Mariner 2 77 -3 193 269 15 30 chr11 20392600 20392667 -128390805 + MIR SINE MIR 189 254 -8 191 340 57 0 chr11 20393479 20393585 -128389887 + L2 LINE L2 3202 3313 0 257 176 0 0 chr11 20393786 20393837 -128389635 - L1MA9 LINE L1 -71 6241 6191 2679 164 33 35 chr11 20393851 20393884 -128389588 - L1MA9 LINE L1 -232 6080 6048 2398 76 7 7 chr11 20393884 20394186 -128389286 - AluY SINE Alu -9 302 1 2679 164 33 35 chr11 20394186 20394671 -128388801 - L1MA9 LINE L1 -264 6048 5563 275 348 43 0 chr11 20394994 20395109 -128388363 - MIR SINE MIR -56 206 87 5857 27 0 0 chr11 20395169 20395797 -128387675 - SVA Other Other 0 1386 759 234 239 188 26 chr11 20396826 20396943 -128386529 + MIR3 SINE MIR 6 141 -67 1294 182 182 35 chr11 20397224 20397369 -128386103 + L1MB7 LINE L1 5723 5845 -339 1993 142 0 0 chr11 20397369 20397664 -128385808 + AluSx SINE Alu 1 295 -17 1294 182 182 35 chr11 20397664 20397685 -128385787 + L1MB7 LINE L1 5845 5862 -322 2391 127 34 0 chr11 20397685 20398039 -128385433 - MER47A DNA MER2_type 0 366 1 1294 182 182 35 chr11 20398039 20398271 -128385201 + L1MB7 LINE L1 5862 6183 -1 677 250 0 7 chr11 20399009 20399157 -128384315 - MIR SINE MIR -13 249 103 421 328 100 30 chr11 20399927 20400226 -128383246 - L2 LINE L2 0 3272 2953 384 111 0 0 chr11 20400679 20400742 -128382730 + (TTCCC)n Simple_repeat Simple_repeat 2 64 0 * 422 132 0 49 chr11 20400727 20400871 -128382601 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 314 131 49 16 chr11 20400871 20400932 -128382540 + CT-rich Low_complexity Low_complexity 5 67 0 940 219 131 8 chr11 20400932 20401169 -128382303 - AluSg SINE Alu -44 266 1 554 335 27 0 chr11 20401217 20401405 -128382067 - MIR SINE MIR -16 246 54 492 255 30 0 chr11 20451881 20451993 -128331479 - MIR3 SINE MIR -35 173 58 186 43 0 0 chr11 20452528 20452551 -128330921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1980 117 33 0 chr11 20452554 20452827 -128330645 - AluSx SINE Alu -30 282 1 247 257 99 10 chr11 20454763 20454864 -128328608 + L1M4 LINE L1 3743 3852 -2294 23 54 0 0 chr11 20455293 20455330 -128328142 + AT_rich Low_complexity Low_complexity 1 37 0 508 118 26 0 chr11 20456434 20456510 -128326962 - L1PA7 LINE L1 -3 6151 6074 740 125 230 3 chr11 20456610 20456770 -128326702 - Charlie3 DNA MER1_type -2443 267 25 1795 134 10 14 chr11 20457411 20457703 -128325769 + AluY SINE Alu 1 291 -20 26 0 0 0 chr11 20459211 20459237 -128324235 + AT_rich Low_complexity Low_complexity 1 26 0 530 217 101 29 chr11 20459460 20459598 -128323874 - FRAM SINE Alu -21 155 8 26 0 0 0 chr11 20460053 20460079 -128323393 + AT_rich Low_complexity Low_complexity 1 26 0 747 222 156 26 chr11 20460157 20460459 -128323013 + Charlie7 DNA MER1_type 320 660 -1952 279 259 93 54 chr11 20460495 20460773 -128322699 + Charlie7 DNA MER1_type 2207 2495 -117 31 68 0 0 chr11 20463674 20463733 -128319739 + AT_rich Low_complexity Low_complexity 1 59 0 3611 165 7 8 chr11 20463961 20464555 -128318917 + L1PA15 LINE L1 5571 6163 -2 23 0 0 0 chr11 20464667 20464690 -128318782 + AT_rich Low_complexity Low_complexity 1 23 0 599 314 66 5 chr11 20465505 20465768 -128317704 + L1MC/D LINE L1 5405 5683 -651 22 35 0 0 chr11 20466454 20466483 -128316989 + AT_rich Low_complexity Low_complexity 1 29 0 298 204 0 0 chr11 20466735 20466784 -128316688 - Tigger3(Golem) DNA MER2_type 0 3037 2989 1973 150 10 0 chr11 20467438 20467732 -128315740 - AluSx SINE Alu -15 297 1 279 292 23 39 chr11 20467864 20467994 -128315478 - MIR SINE MIR -13 249 122 1449 195 40 14 chr11 20468101 20468398 -128315074 - AluSx SINE Alu -7 305 1 25 0 0 0 chr11 20468398 20468423 -128315049 + AT_rich Low_complexity Low_complexity 1 25 0 1278 234 65 15 chr11 20468464 20468866 -128314606 + L1MCc LINE L1 50 471 -5952 1892 251 82 10 chr11 20469427 20470108 -128313364 + L1M4 LINE L1 3085 3814 -2332 181 311 78 0 chr11 20470235 20470325 -128313147 - MIR3 SINE MIR -97 111 15 203 268 61 37 chr11 20470596 20470678 -128312794 + MIR SINE MIR 8 91 -171 374 233 75 82 chr11 20470692 20470838 -128312634 - MIR SINE MIR -15 247 103 293 169 91 52 chr11 20470909 20470986 -128312486 + MIR SINE MIR 162 241 -21 * 419 357 103 26 chr11 20470962 20471312 -128312160 - L2 LINE L2 -27 3245 2869 2195 99 0 60 chr11 20472440 20472772 -128310700 + AluSq SINE Alu 2 313 0 262 231 30 101 chr11 20473671 20473720 -128309752 - L1ME LINE L1 -241 5880 5829 2326 101 0 9 chr11 20473720 20474036 -128309436 - AluSq SINE Alu 0 313 1 262 231 30 101 chr11 20474036 20474155 -128309317 - L1ME LINE L1 -292 5829 5724 2476 60 0 29 chr11 20474156 20474470 -128309002 - AluY SINE Alu 0 311 7 381 254 151 8 chr11 20475027 20475153 -128308319 + MIR SINE MIR 47 190 -72 349 299 39 16 chr11 20475295 20475422 -128308050 - MIR SINE MIR -117 145 16 976 290 126 70 chr11 20475613 20476673 -128306799 - L2 LINE L2 -202 3070 1891 22 35 0 0 chr11 20476922 20476951 -128306521 + AT_rich Low_complexity Low_complexity 1 29 0 4318 164 29 10 chr11 20477932 20478725 -128304747 - L1PA16 LINE L1 -2 6164 5357 454 313 70 51 chr11 20479649 20479905 -128303567 - L3 LINE CR1 -115 1462 1202 252 0 0 0 chr11 20480639 20480667 -128302805 + (TG)n Simple_repeat Simple_repeat 1 28 0 262 244 56 0 chr11 20480974 20481064 -128302408 - MIR SINE MIR 0 262 168 557 280 140 10 chr11 20481070 20481263 -128302209 - MIR SINE MIR 0 262 45 2427 85 0 22 chr11 20481407 20481725 -128301747 + AluY SINE Alu 1 311 0 248 232 49 73 chr11 20482791 20482873 -128300599 + L2 LINE L2 3217 3296 -17 2149 52 0 0 chr11 20482883 20483131 -128300341 + L1PA5 LINE L1 5905 6152 -2 1552 214 30 28 chr11 20483178 20483542 -128299930 - MLT1A1 LTR MaLR 0 365 1 215 284 67 77 chr11 20483723 20483917 -128299555 - L2 LINE L2 -178 3094 2903 312 349 31 42 chr11 20484561 20484753 -128298719 - MIR SINE MIR -62 200 11 181 225 0 0 chr11 20485606 20485646 -128297826 + MIR SINE MIR 108 147 -115 384 250 40 30 chr11 20486116 20486216 -128297256 + MIR SINE MIR 2 102 -160 496 167 0 0 chr11 20486542 20486614 -128296858 + AluJ/FRAM SINE Alu 225 296 -16 213 288 206 0 chr11 20486616 20486689 -128296783 - MIR SINE MIR -77 131 44 1810 164 30 7 chr11 20486698 20486997 -128296475 - AluJb SINE Alu -6 306 1 2062 103 39 0 chr11 20487833 20488114 -128295358 + AluSx SINE Alu 1 292 -20 330 375 100 0 chr11 20488882 20489042 -128294430 + MIR3 SINE MIR 12 187 -21 480 251 130 100 chr11 20489449 20489819 -128293653 + L2 LINE L2 2842 3222 -50 193 282 82 24 chr11 20489815 20489900 -128293572 - MIR SINE MIR -127 135 46 * 815 259 75 21 chr11 20491090 20491329 -128292143 - MIR SINE MIR -7 255 4 470 316 44 18 chr11 20491350 20491575 -128291897 - L1ME4a LINE L1 -223 5898 5668 625 88 0 0 chr11 20491925 20492005 -128291467 + MADE1 DNA Mariner 1 80 0 513 130 13 13 chr11 20492044 20492121 -128291351 + AluS SINE Alu 2 78 -235 1211 166 92 56 chr11 20492665 20492884 -128290588 + L1MC2 LINE L1 5996 6233 -111 1477 173 90 0 chr11 20492884 20493150 -128290322 + AluJo SINE Alu 3 292 -20 1211 166 92 56 chr11 20493150 20493267 -128290205 + L1MC2 LINE L1 6233 6344 0 194 325 12 25 chr11 20493307 20493387 -128290085 + MER5A DNA MER1_type 111 189 0 343 281 247 7 chr11 20494541 20494687 -128288785 - MER5A DNA MER1_type 0 189 9 324 0 0 0 chr11 20502129 20502165 -128281307 + (TG)n Simple_repeat Simple_repeat 2 37 0 442 245 105 19 chr11 20502289 20502499 -128280973 - MIR SINE MIR -6 256 18 522 289 60 60 chr11 20503486 20503735 -128279737 + MIR SINE MIR 14 262 0 549 240 176 10 chr11 20503879 20504083 -128279389 + MIR SINE MIR 13 250 -12 444 258 77 32 chr11 20504103 20504258 -128279214 + MIR SINE MIR 20 181 -81 196 393 0 0 chr11 20504669 20504758 -128278714 + MIR SINE MIR 161 249 -13 280 312 70 32 chr11 20504858 20505044 -128278428 - MIR3 SINE MIR -5 203 11 1300 170 9 136 chr11 20505509 20505658 -128277814 + AluJo SINE Alu 1 87 -215 1978 137 0 0 chr11 20505658 20505957 -128277515 + AluSx SINE Alu 1 299 -13 1300 170 9 136 chr11 20505957 20506137 -128277335 + AluJo SINE Alu 87 288 -14 277 231 97 107 chr11 20506542 20506758 -128276714 + L2 LINE L2 3078 3291 -22 386 324 76 7 chr11 20506994 20507139 -128276333 + MIR SINE MIR 50 204 -58 1757 149 9 40 chr11 20507752 20508074 -128275398 + AluSx SINE Alu 1 312 0 603 271 97 78 chr11 20508265 20508727 -128274745 + L2 LINE L2 2836 3306 -7 2266 99 0 0 chr11 20509112 20509414 -128274058 + AluSx SINE Alu 2 303 -9 252 171 0 0 chr11 20509455 20509496 -128273976 + Charlie4 DNA MER1_type 9 49 -1912 180 306 30 75 chr11 20509985 20510073 -128273399 - L2 LINE L2 0 3313 3231 1552 164 20 36 chr11 20510073 20510377 -128273095 + AluJo SINE Alu 1 299 -13 180 306 30 75 chr11 20510377 20510422 -128273050 - L2 LINE L2 -82 3231 3186 503 294 108 34 chr11 20510467 20510736 -128272736 - L2 LINE L2 -44 3269 2981 769 261 108 15 chr11 20510746 20511122 -128272350 - MLT1J2 LTR MaLR -11 439 2 185 384 123 21 chr11 20511145 20511429 -128272043 - L2 LINE L2 -345 2969 2657 673 270 74 74 chr11 20511440 20511803 -128271669 + L2 LINE L2 2871 3233 -80 862 254 208 28 chr11 20511847 20512382 -128271090 - L2 LINE L2 -751 2563 1933 473 291 64 49 chr11 20512886 20513089 -128270383 + MIR SINE MIR 9 214 -48 1806 106 44 31 chr11 20513345 20513638 -128269834 - AluSq SINE Alu -14 299 3 1568 82 0 10 chr11 20515052 20515258 -128268214 - AluSg SINE Alu -105 205 2 428 256 196 30 chr11 20515258 20515457 -128268015 - MIR SINE MIR -3 259 28 21 71 0 0 chr11 20517497 20517539 -128265933 + AT_rich Low_complexity Low_complexity 1 42 0 1771 171 20 0 chr11 20517571 20517876 -128265596 + AluJb SINE Alu 1 311 -1 214 309 50 72 chr11 20518764 20518903 -128264569 - L2 LINE L2 0 3272 3137 184 227 0 0 chr11 20518925 20518969 -128264503 + L2 LINE L2 3229 3272 0 439 312 48 106 chr11 20519185 20519583 -128263889 - L2 LINE L2 -3 3269 2895 * 485 198 69 26 chr11 20519581 20519697 -128263775 - L2 LINE L2 -3 3310 3190 758 229 55 28 chr11 20519841 20520094 -128263378 - MIR SINE MIR -1 261 2 366 323 32 42 chr11 20520735 20520924 -128262548 + MIR SINE MIR 8 194 -68 329 228 182 27 chr11 20521216 20521377 -128262095 - MIR SINE MIR -34 228 31 232 194 0 28 chr11 20521847 20521919 -128261553 + GA-rich Low_complexity Low_complexity 1 70 0 226 310 115 35 chr11 20521999 20522151 -128261321 - MIR SINE MIR -37 171 18 192 204 20 41 chr11 20524320 20524369 -128259103 + MIR SINE MIR 194 241 -21 377 242 75 17 chr11 20524478 20524598 -128258874 - MER102b DNA MER1_type 0 341 215 370 335 27 27 chr11 20524759 20524944 -128258528 - MIR3 SINE MIR -4 204 20 372 261 94 29 chr11 20525149 20525287 -128258185 + L2 LINE L2 3126 3272 0 555 266 94 26 chr11 20527110 20527302 -128256170 - MLT1K LTR MaLR -57 531 327 252 0 0 0 chr11 20527329 20527357 -128256115 + (TG)n Simple_repeat Simple_repeat 1 28 0 355 177 71 71 chr11 20527383 20527496 -128255976 + MER103 DNA DNA 8 120 -46 526 330 68 34 chr11 20528656 20528892 -128254580 + MIR SINE MIR 2 245 -17 380 324 20 34 chr11 20529701 20529861 -128253611 + MIR SINE MIR 16 170 -66 2287 99 0 6 chr11 20529962 20530276 -128253196 - AluSx SINE Alu 0 312 1 571 288 148 34 chr11 20530360 20530876 -128252596 - L2 LINE L2 -230 3083 2485 271 273 26 26 chr11 20531906 20531983 -128251489 + MIR SINE MIR 65 141 -67 559 267 70 52 chr11 20532158 20532488 -128250984 + MER102b DNA MER1_type 5 340 -1 329 300 0 18 chr11 20533194 20533304 -128250168 + L1ME3 LINE L1 6030 6137 -25 2080 136 0 3 chr11 20534356 20534665 -128248807 + AluSx SINE Alu 1 308 -4 321 319 262 0 chr11 20534693 20534884 -128248588 + MIR SINE MIR 9 249 -13 709 51 20 0 chr11 20535734 20535832 -128247640 - L1PB2 LINE L1 -2 6149 6050 217 150 0 25 chr11 20537372 20537412 -128246060 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 805 260 18 0 chr11 20538153 20538322 -128245150 + MIR SINE MIR 35 206 -56 509 280 37 47 chr11 20540105 20540319 -128243153 + MIR SINE MIR 51 262 0 238 275 29 0 chr11 20540675 20540744 -128242728 + MIR SINE MIR 45 115 -147 480 266 57 38 chr11 20541037 20541201 -128242271 + MIR3 SINE MIR 2 183 -25 244 313 92 95 chr11 20542029 20542333 -128241139 - L2 LINE L2 -158 3114 2812 2157 104 7 0 chr11 20542709 20543007 -128240465 + AluSp SINE Alu 1 300 -13 359 330 127 50 chr11 20543278 20543499 -128239973 + L1ME4a LINE L1 5884 6121 0 461 164 17 121 chr11 20544070 20544107 -128239365 + MIR SINE MIR 87 126 -136 2202 109 0 0 chr11 20544107 20544411 -128239061 - AluSg SINE Alu -3 307 4 461 164 17 121 chr11 20544411 20544489 -128238983 + MIR SINE MIR 126 190 -72 359 275 119 0 chr11 20544504 20544613 -128238859 + L2 LINE L2 3187 3308 -5 2114 106 0 7 chr11 20544795 20545096 -128238376 - AluSx SINE Alu -13 299 1 195 268 56 14 chr11 20545665 20545736 -128237736 - L2 LINE L2 0 3272 3199 342 361 48 36 chr11 20546218 20546384 -128237088 + MIR3 SINE MIR 33 200 -8 1214 213 17 17 chr11 20547358 20547597 -128235875 + MIR SINE MIR 24 262 0 418 262 37 9 chr11 20547597 20547704 -128235768 + L2 LINE L2 3190 3299 -14 296 245 191 0 chr11 20547833 20547927 -128235545 + MIR SINE MIR 83 194 -68 1713 126 4 47 chr11 20548734 20549012 -128234460 - AluSx SINE Alu -46 266 1 297 125 0 62 chr11 20549022 20549086 -128234386 - MER53 DNA DNA -124 65 6 412 293 107 0 chr11 20549733 20549873 -128233599 + MIR SINE MIR 20 174 -88 207 211 0 0 chr11 20549963 20550001 -128233471 + A-rich Low_complexity Low_complexity 2 39 0 207 302 124 70 chr11 20550082 20550324 -128233148 - L2 LINE L2 -3 3269 3015 276 313 159 29 chr11 20550360 20550568 -128232904 - L2 LINE L2 -220 3052 2818 221 266 52 117 chr11 20551417 20551571 -128231901 + MER5A DNA MER1_type 44 187 -2 23412 76 13 11 chr11 20552181 20556163 -128227309 - L1PA7 LINE L1 -3 6151 2151 2258 69 0 69 chr11 20556429 20556763 -128226709 - AluY SINE Alu 0 311 1 233 299 138 46 chr11 20557318 20557492 -128225980 - MIR SINE MIR -71 191 2 280 311 132 9 chr11 20557534 20557640 -128225832 - L2 LINE L2 -6 3266 3148 245 335 0 27 chr11 20561399 20561515 -128221957 + MIR SINE MIR 42 150 -93 238 333 32 11 chr11 20561796 20561889 -128221583 + MIR SINE MIR 118 212 -50 2028 141 0 6 chr11 20562131 20562444 -128221028 - AluSx SINE Alu -1 311 1 388 171 81 81 chr11 20563322 20563433 -128220039 + L1MCa LINE L1 2242 2352 -4074 657 122 50 0 chr11 20563434 20563573 -128219899 + L1MCa LINE L1 2322 2467 -3959 250 214 0 18 chr11 20564522 20564578 -128218894 + L2 LINE L2 3257 3311 -2 427 269 87 0 chr11 20564676 20564825 -128218647 - MER103 DNA DNA -4 162 1 370 252 122 41 chr11 20566852 20566975 -128216497 - L2 LINE L2 -1 3271 3139 232 108 0 0 chr11 20567036 20567073 -128216399 - L1MB7 LINE L1 -16 6168 6132 1128 98 6 38 chr11 20567074 20567297 -128216175 - AluSg/x SINE Alu 0 312 134 345 158 0 0 chr11 20567297 20567354 -128216118 - L1MB7 LINE L1 -44 6140 6084 387 252 293 0 chr11 20569704 20569827 -128213645 + MIR3 SINE MIR 49 207 -1 214 229 43 29 chr11 20570180 20570250 -128213222 + MIR SINE MIR 22 92 -116 2160 103 3 7 chr11 20570411 20570734 -128212738 - AluSx SINE Alu 0 312 3 2000 115 0 30 chr11 20571200 20571504 -128211968 + AluSx SINE Alu 3 297 -15 265 177 65 0 chr11 20571802 20571864 -128211608 - MER113 DNA MER1_type? -1 520 455 34 24 0 0 chr11 20571875 20571916 -128211556 + AT_rich Low_complexity Low_complexity 1 41 0 356 248 29 0 chr11 20571981 20572086 -128211386 - MER113 DNA MER1_type? -413 108 1 1702 223 71 21 chr11 20573952 20574433 -128209039 + MLT1D LTR MaLR 1 505 0 700 261 60 23 chr11 20574489 20574704 -128208768 - MIR SINE MIR 0 262 40 577 224 201 0 chr11 20575572 20575746 -128207726 - MER3 DNA MER1_type 0 209 1 389 284 21 0 chr11 20575838 20575933 -128207539 + MIR SINE MIR 96 192 -70 1834 145 13 13 chr11 20575981 20576285 -128207187 - AluSx SINE Alu -8 304 1 2056 112 3 20 chr11 20577444 20577749 -128205723 - AluSx SINE Alu -8 304 5 1318 226 139 6 chr11 20578033 20578392 -128205080 - MLT1I LTR MaLR 0 409 3 306 341 133 7 chr11 20578733 20578868 -128204604 - L2 LINE L2 -19 3253 3102 2259 85 3 13 chr11 20579124 20579440 -128204032 + AluSq SINE Alu 1 313 0 234 296 37 0 chr11 20579685 20579766 -128203706 - MIR3 SINE MIR -5 203 120 495 263 125 0 chr11 20579912 20580064 -128203408 + MIR3 SINE MIR 14 184 -24 401 267 10 10 chr11 20580947 20581048 -128202424 - MIR SINE MIR -69 139 39 701 310 52 4 chr11 20582352 20582581 -128200891 - MIR SINE MIR 0 262 23 201 250 185 28 chr11 20582874 20582982 -128200490 + L2 LINE L2 3140 3264 -8 237 210 0 0 chr11 20583113 20583175 -128200297 + CT-rich Low_complexity Low_complexity 5 66 0 748 312 84 29 chr11 20583192 20583893 -128199579 + L2 LINE L2 2582 3313 0 2157 89 3 7 chr11 20584239 20584530 -128198942 - AluSq SINE Alu -23 290 1 283 247 34 34 chr11 20584626 20584715 -128198757 + MIR SINE MIR 162 250 -12 230 188 16 78 chr11 20584750 20584814 -128198658 - MIR SINE MIR -121 141 82 247 294 73 73 chr11 20585733 20585951 -128197521 + L2 LINE L2 2632 2849 -465 2262 110 0 0 chr11 20586666 20586976 -128196496 - AluSg SINE Alu 0 310 1 217 243 0 81 chr11 20587109 20587183 -128196289 - MIR SINE MIR -78 184 117 260 305 114 15 chr11 20588955 20589086 -128194386 - MIR SINE MIR -111 151 8 781 296 113 10 chr11 20591186 20591575 -128191897 - MLT1K LTR MaLR -16 572 144 22 0 0 0 chr11 20592286 20592308 -128191164 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chr11 20592995 20593041 -128190431 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 167 0 0 chr11 20594005 20594047 -128189425 + (TAA)n Simple_repeat Simple_repeat 3 44 0 390 289 38 57 chr11 20594092 20594251 -128189221 - MIR SINE MIR -79 183 28 308 302 56 20 chr11 20594465 20594611 -128188861 - MER5A DNA MER1_type -28 161 3 605 312 44 0 chr11 20594889 20595094 -128188378 + MIR SINE MIR 14 227 -35 620 286 61 9 chr11 20596319 20596532 -128186940 - MIR SINE MIR -16 246 23 451 281 128 71 chr11 20597133 20597687 -128185785 + L2 LINE L2 2593 3239 -33 805 282 18 14 chr11 20597705 20597925 -128185547 + MIR SINE MIR 13 233 -29 600 111 0 0 chr11 20598655 20598745 -128184727 + (TA)n Simple_repeat Simple_repeat 2 91 0 306 103 0 0 chr11 20598791 20598830 -128184642 + Alu SINE Alu 1 39 -263 327 248 233 0 chr11 20599819 20599948 -128183524 - MIR SINE MIR -11 251 93 23 0 0 0 chr11 20600150 20600173 -128183299 + AT_rich Low_complexity Low_complexity 1 23 0 289 302 35 0 chr11 20601145 20601231 -128182241 + MIR3 SINE MIR 74 162 -46 209 302 126 38 chr11 20602109 20602268 -128181204 + MIR3 SINE MIR 7 179 -29 370 264 83 0 chr11 20602600 20602721 -128180751 + MIR SINE MIR 108 238 -24 1495 181 10 17 chr11 20603148 20603441 -128180031 + AluJo SINE Alu 1 291 -21 694 226 125 0 chr11 20603541 20603709 -128179763 - MER63A DNA MER1_type -1 209 21 406 302 0 10 chr11 20603730 20603826 -128179646 - MIR SINE MIR -166 96 2 195 368 0 15 chr11 20604244 20604312 -128179160 - L2 LINE L2 -16 3256 3190 2392 51 7 0 chr11 20604784 20605077 -128178395 + AluY SINE Alu 11 305 -6 1259 188 113 4 chr11 20605084 20605350 -128178122 + AluSc SINE Alu 1 295 -14 27 0 0 0 chr11 20605681 20605708 -128177764 + AT_rich Low_complexity Low_complexity 1 27 0 210 240 0 20 chr11 20609772 20609822 -128173650 + CT-rich Low_complexity Low_complexity 4 52 0 353 289 104 22 chr11 20610150 20610285 -128173187 - MER5A DNA MER1_type -35 154 9 216 328 172 23 chr11 20610354 20610528 -128172944 - MIR SINE MIR -13 249 50 1846 141 3 13 chr11 20611011 20611315 -128172157 + AluSx SINE Alu 1 301 -11 654 221 45 19 chr11 20611514 20611668 -128171804 - MLT1E LTR MaLR 0 593 436 1372 265 98 37 chr11 20611718 20612040 -128171432 + L1ME3A LINE L1 4030 4331 -1815 2288 69 3 3 chr11 20612040 20612343 -128171129 + AluY SINE Alu 1 303 -8 1372 265 98 37 chr11 20612343 20612786 -128170686 + L1ME3A LINE L1 4331 4842 -1304 1575 164 3 44 chr11 20613004 20613179 -128170293 - AluJo SINE Alu -4 308 150 2044 119 3 3 chr11 20613179 20613482 -128169990 - AluSx SINE Alu -9 303 1 1575 164 3 44 chr11 20613482 20613624 -128169848 - AluJo SINE Alu -162 150 4 2134 109 0 0 chr11 20613717 20614010 -128169462 + AluSg SINE Alu 1 293 -17 395 287 155 64 chr11 20614084 20614380 -128169092 + LTR16C LTR ERVL 75 397 -94 249 133 107 93 chr11 20614418 20614493 -128168979 + MER96 DNA MER1_type? 98 173 -2 303 226 145 54 chr11 20614569 20614588 -128168884 + L1ME3A LINE L1 5621 5637 -533 971 260 48 54 chr11 20614588 20614980 -128168492 + MLT1B LTR MaLR 1 390 0 303 226 145 54 chr11 20614980 20615366 -128168106 + L1ME3A LINE L1 5637 6071 -99 1774 202 22 14 chr11 20615366 20615728 -128167744 + MLT1A1 LTR MaLR 1 365 0 303 226 145 54 chr11 20615728 20615794 -128167678 + L1ME3A LINE L1 6071 6130 -40 201 204 37 19 chr11 20615976 20616030 -128167442 + MIR SINE MIR 62 116 -92 398 330 94 17 chr11 20616166 20616397 -128167075 + L3 LINE CR1 1306 1554 -23 242 236 139 67 chr11 20616397 20616562 -128166910 + MIR3 SINE MIR 1 177 -31 1986 132 0 0 chr11 20616836 20617125 -128166347 + AluSx SINE Alu 3 291 -21 241 246 49 0 chr11 20617328 20617389 -128166083 - MIR SINE MIR -153 109 46 380 268 25 108 chr11 20617627 20617784 -128165688 + MIR SINE MIR 38 181 -27 3671 136 101 18 chr11 20617784 20618437 -128165035 - MER39 LTR ERV1 0 707 1 1889 175 49 31 chr11 20618505 20618894 -128164578 - MSTD LTR MaLR 0 396 1 219 309 41 10 chr11 20618971 20619068 -128164404 + MIR SINE MIR 30 129 -79 741 181 0 45 chr11 20619331 20619362 -128164110 - AluJo/FRAM SINE Alu -9 303 272 1958 136 0 41 chr11 20619362 20619679 -128163793 + AluSx SINE Alu 1 304 -8 741 181 0 45 chr11 20619679 20619802 -128163670 - AluJo/FRAM SINE Alu -40 272 156 427 152 13 38 chr11 20619827 20619906 -128163566 + MER45A DNA AcHobo 102 178 0 353 277 40 40 chr11 20619920 20620068 -128163404 - MLT1K LTR MaLR -424 164 17 5522 191 51 31 chr11 20620225 20621524 -128161948 + L1M3f LINE L1 1 1289 -4137 1909 142 3 10 chr11 20621524 20621833 -128161639 + AluJb SINE Alu 1 307 -5 5522 191 51 31 chr11 20621833 20621908 -128161564 + L1M3f LINE L1 1289 1361 -4065 423 210 0 0 chr11 20621928 20622009 -128161463 - MIR SINE MIR -32 230 150 940 281 59 32 chr11 20622574 20623169 -128160303 + L1MC4 LINE L1 6362 7058 -835 497 291 67 27 chr11 20623461 20623684 -128159788 + MER102a DNA MER1_type 98 329 -1 407 19 19 0 chr11 20623785 20623837 -128159635 + (TG)n Simple_repeat Simple_repeat 1 53 0 2024 135 0 0 chr11 20623963 20624259 -128159213 + AluSx SINE Alu 1 296 -16 705 283 187 39 chr11 20624579 20624964 -128158508 + MLT1L LTR MaLR 12 453 -162 2275 106 0 0 chr11 20625437 20625749 -128157723 + AluSx SINE Alu 1 312 0 379 290 16 32 chr11 20625849 20625973 -128157499 - MIR SINE MIR -106 156 35 829 263 12 40 chr11 20626352 20626599 -128156873 + MIR SINE MIR 20 259 -3 349 310 10 0 chr11 20627277 20627377 -128156095 + L2 LINE L2 1700 1800 -1514 400 203 0 14 chr11 20627378 20627452 -128156020 + MER112 DNA MER1_type 6 78 -182 307 198 104 38 chr11 20627494 20627600 -128155872 + MER112 DNA MER1_type 60 172 -88 22 0 0 0 chr11 20627603 20627625 -128155847 + AT_rich Low_complexity Low_complexity 1 22 0 365 300 82 21 chr11 20627914 20628147 -128155325 - L1M4 LINE L1 -1095 5051 4805 327 328 76 25 chr11 20628153 20628467 -128155005 + L2 LINE L2 1840 2169 -1145 643 286 86 9 chr11 20628674 20628894 -128154578 + MLT1J LTR MaLR 92 328 -183 603 302 88 73 chr11 20629121 20629505 -128153967 + L2 LINE L2 2467 2856 -458 2356 123 40 0 chr11 20629592 20629941 -128153531 + THE1B LTR MaLR 2 364 0 494 286 208 31 chr11 20629941 20630235 -128153237 + L2 LINE L2 2963 3308 -5 2070 123 3 7 chr11 20630285 20630593 -128152879 + AluSx SINE Alu 2 308 -4 1109 182 19 37 chr11 20631550 20631819 -128151653 - L1MC3 LINE L1 0 7785 7522 264 294 176 20 chr11 20632142 20632295 -128151177 + MIR SINE MIR 54 230 -32 3842 117 8 0 chr11 20632414 20632936 -128150536 - MER1A DNA MER1_type 0 527 2 226 281 129 29 chr11 20633161 20633300 -128150172 + MIR SINE MIR 110 262 0 2882 133 20 7 chr11 20633718 20634175 -128149297 - MER50 LTR ERV1 -271 463 1 301 304 14 34 chr11 20634200 20634348 -128149124 - L2 LINE L2 -1077 2237 2093 9369 201 59 49 chr11 20634615 20635115 -128148357 + Charlie1 DNA MER1_type 2 495 -2266 1864 141 28 75 chr11 20635115 20635270 -128148202 - MER2 DNA MER2_type 0 344 183 1975 119 7 13 chr11 20635270 20635572 -128147900 + AluJb SINE Alu 9 308 -4 1864 141 28 75 chr11 20635572 20635777 -128147695 - MER2 DNA MER2_type -161 183 1 9369 201 59 49 chr11 20635777 20635830 -128147642 + Charlie1 DNA MER1_type 495 546 -2215 2142 115 0 0 chr11 20635830 20636135 -128147337 + AluSc SINE Alu 1 305 -4 9369 201 59 49 chr11 20636135 20636516 -128146956 + Charlie1 DNA MER1_type 546 922 -1839 1904 126 14 3 chr11 20636516 20636809 -128146663 + AluSx SINE Alu 3 298 -14 243 0 0 0 chr11 20636812 20636839 -128146633 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9369 201 59 49 chr11 20636839 20637552 -128145920 + Charlie1 DNA MER1_type 923 1627 -1134 2022 102 0 3 chr11 20637552 20637883 -128145589 + AluSx SINE Alu 1 330 0 9369 201 59 49 chr11 20637883 20638622 -128144850 + Charlie1 DNA MER1_type 1627 2357 -404 1592 187 10 3 chr11 20638622 20638916 -128144556 + AluJb SINE Alu 1 296 -16 9369 201 59 49 chr11 20638916 20638946 -128144526 + Charlie1 DNA MER1_type 2357 2385 -376 1523 103 3 141 chr11 20638946 20639286 -128144186 - AluSx SINE Alu -19 293 1 9369 201 59 49 chr11 20639286 20639514 -128143958 + Charlie1 DNA MER1_type 2385 2759 -2 268 250 213 9 chr11 20639735 20639843 -128143629 + MIR SINE MIR 77 206 -56 226 182 0 73 chr11 20639963 20640018 -128143454 + MIR SINE MIR 201 251 -11 * 243 88 0 0 chr11 20639986 20640020 -128143452 + L2 LINE L2 3265 3298 -15 201 130 0 43 chr11 20640247 20640265 -128143207 + (A)n Simple_repeat Simple_repeat 1 18 -26 2311 80 0 10 chr11 20640265 20640579 -128142893 + AluY SINE Alu 1 311 0 201 130 0 43 chr11 20640579 20640606 -128142866 + (A)n Simple_repeat Simple_repeat 18 44 0 209 408 48 0 chr11 20640703 20640806 -128142666 - L2 LINE L2 0 3272 3165 2006 121 10 0 chr11 20640914 20641212 -128142260 + AluSx SINE Alu 1 301 -11 194 81 27 0 chr11 20641222 20641259 -128142213 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2694 146 28 19 chr11 20641454 20641927 -128141545 - L1MB2 LINE L1 -8 6163 5687 603 282 55 6 chr11 20642905 20643086 -128140386 + MIR3 SINE MIR 16 205 -3 204 186 47 0 chr11 20644979 20645022 -128138450 + MIR SINE MIR 101 145 -63 26 30 0 0 chr11 20645639 20645672 -128137800 + AT_rich Low_complexity Low_complexity 1 33 0 345 24 0 0 chr11 20646284 20646326 -128137146 + (TGG)n Simple_repeat Simple_repeat 1 42 0 191 236 69 56 chr11 20650312 20650384 -128133088 + L3 LINE CR1 1370 1442 -135 310 269 0 21 chr11 20650527 20650620 -128132852 + CT-rich Low_complexity Low_complexity 1 91 0 214 182 0 0 chr11 20652680 20652724 -128130748 + T-rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr11 20653055 20653094 -128130378 + AT_rich Low_complexity Low_complexity 1 39 0 412 200 0 0 chr11 20653094 20653164 -128130308 - FLAM_A SINE Alu -16 117 48 306 241 27 27 chr11 20653205 20653317 -128130155 + MIR3 SINE MIR 82 193 -15 330 125 0 0 chr11 20653948 20653996 -128129476 - LTR48 LTR ERV1 -344 443 396 840 124 47 0 chr11 20654020 20654149 -128129323 + AluJo SINE Alu 1 135 -177 1426 185 104 45 chr11 20654175 20654307 -128129165 - LTR48 LTR ERV1 -410 377 254 2250 73 50 20 chr11 20654307 20654609 -128128863 - AluY SINE Alu 0 311 1 1426 185 104 45 chr11 20654609 20654832 -128128640 - LTR48 LTR ERV1 -533 254 1 568 263 46 69 chr11 20655594 20656007 -128127465 + LTR33 LTR ERVL 1 452 -69 905 344 90 19 chr11 20656265 20656643 -128126829 - MER115 DNA AcHobo -287 406 2 4234 135 26 3 chr11 20656676 20657870 -128125602 - L1MA6 LINE L1 -408 5892 4676 247 301 21 0 chr11 20657898 20657991 -128125481 + L3 LINE CR1 1191 1285 -292 192 191 64 0 chr11 20658041 20658088 -128125384 + L2 LINE L2 2679 2728 -586 384 242 8 32 chr11 20658093 20658217 -128125255 - L2 LINE L2 -1 3312 3192 467 171 26 68 chr11 20658474 20658591 -128124881 + MIR SINE MIR 64 175 -87 1857 155 10 13 chr11 20658727 20659031 -128124441 - AluSx SINE Alu -9 303 1 500 262 0 27 chr11 20659096 20659245 -128124227 - MIR SINE MIR -14 248 104 1629 216 43 26 chr11 20659255 20659791 -128123681 + MLT2F LTR ERVL 1 620 -43 263 26 51 0 chr11 20660847 20660886 -128122586 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 1576 90 36 5 chr11 20661303 20661526 -128121946 - MER30 DNA MER1_type 0 230 1 2265 114 3 3 chr11 20661721 20662027 -128121445 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr11 20662373 20662401 -128121071 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20662439 20662460 -128121012 + AT_rich Low_complexity Low_complexity 1 21 0 223 248 58 83 chr11 20662960 20663081 -128120391 + L2 LINE L2 2769 2886 -428 197 294 73 15 chr11 20663169 20663237 -128120235 + L2 LINE L2 3000 3071 -201 542 268 60 11 chr11 20663402 20663585 -128119887 - MIR SINE MIR -70 192 1 352 233 177 33 chr11 20663782 20664280 -128119192 + L1ME4a LINE L1 5510 6093 -28 1246 151 5 24 chr11 20664505 20664710 -128118762 - AluJo SINE Alu -16 296 96 2463 95 0 0 chr11 20666400 20666705 -128116767 + AluSx SINE Alu 1 305 -7 2044 164 86 0 chr11 20666816 20667187 -128116285 - MER57A LTR ERV1 0 403 1 185 255 21 0 chr11 20667530 20667577 -128115895 - MIR3 SINE MIR -11 197 150 363 86 0 23 chr11 20667744 20667812 -128115660 - tRNA-Cys-TGC tRNA tRNA -11 64 1 4342 80 2 0 chr11 20668005 20668558 -128114914 + MER41A LTR ERV1 1 554 0 318 130 325 0 chr11 20668642 20668719 -128114753 + MER41A-int LTR ERV1 1 102 -5844 5511 203 102 15 chr11 20668728 20670292 -128113180 + MER41A-int LTR ERV1 1 1789 -4157 1703 66 0 0 chr11 20670266 20670477 -128112995 + MER41A-int LTR ERV1 1952 2162 -4101 * 9329 130 50 26 chr11 20670471 20672480 -128110992 + MER41A-int LTR ERV1 2629 3726 -1289 321 186 0 0 chr11 20672581 20672640 -128110832 + Charlie1 DNA MER1_type 2689 2747 -14 225 297 0 0 chr11 20673010 20673074 -128110398 - MIR SINE MIR -79 129 66 309 109 0 0 chr11 20673187 20673233 -128110239 + (CA)n Simple_repeat Simple_repeat 1 46 0 984 56 0 8 chr11 20673233 20673358 -128110114 - L1PA5 LINE L1 -12 6142 6019 518 256 24 0 chr11 20674632 20674757 -128108715 + MER94 DNA DNA 1 128 -6 317 338 127 14 chr11 20674843 20675242 -128108230 + L2 LINE L2 2600 3047 -225 207 281 122 12 chr11 20675587 20675669 -128107803 - MER91A DNA MER1_type -86 110 20 193 308 0 0 chr11 20675691 20675743 -128107729 + L2 LINE L2 3218 3269 -3 235 236 31 124 chr11 20676114 20676275 -128107197 - MLT1K LTR MaLR -21 567 422 466 302 182 33 chr11 20676579 20677076 -128106396 - L2 LINE L2 0 3313 2724 392 225 25 108 chr11 20677226 20677346 -128106126 - MER97b DNA MER1_type? -612 441 332 381 204 21 11 chr11 20677470 20677563 -128105909 - MIR SINE MIR -165 97 4 261 98 0 0 chr11 20677771 20677812 -128105660 + (CTA)n Simple_repeat Simple_repeat 3 43 0 318 203 40 0 chr11 20677828 20677902 -128105570 - MIR SINE MIR -16 246 170 1214 248 97 78 chr11 20678110 20678711 -128104761 - MLT1L LTR MaLR -2 613 2 1064 248 184 12 chr11 20678838 20679165 -128104307 + MLT1J2 LTR MaLR 6 388 -62 242 305 84 0 chr11 20679299 20679394 -128104078 - L3 LINE CR1 -50 1527 1425 357 283 5 109 chr11 20679434 20679618 -128103854 + MER117 DNA MER1_type 2 166 -31 396 298 30 23 chr11 20679823 20679954 -128103518 - MIR3 SINE MIR -65 143 12 585 206 7 75 chr11 20680015 20680130 -128103342 - MER20 DNA MER1_type -55 164 59 2623 93 13 21 chr11 20680130 20680508 -128102964 + THE1C LTR MaLR 1 375 0 585 206 7 75 chr11 20680508 20680538 -128102934 - MER20 DNA MER1_type -160 59 29 1855 157 10 10 chr11 20681041 20681334 -128102138 - AluJb SINE Alu -19 293 1 264 295 184 9 chr11 20685113 20685330 -128098142 + L2 LINE L2 2688 2942 -372 1247 240 113 32 chr11 20685400 20685924 -128097548 + L2 LINE L2 2518 3083 -230 21 36 0 0 chr11 20686264 20686292 -128097180 + AT_rich Low_complexity Low_complexity 1 28 0 359 247 52 41 chr11 20686424 20686608 -128096864 + MIR SINE MIR 14 193 -57 210 82 0 61 chr11 20686712 20686761 -128096711 + (TCC)n Simple_repeat Simple_repeat 3 48 0 959 157 60 74 chr11 20687014 20687230 -128096242 + MER20 DNA MER1_type 7 219 0 613 241 59 23 chr11 20687337 20687557 -128095915 - L1ME2 LINE L1 0 6164 5937 1224 206 159 61 chr11 20687917 20688164 -128095308 - MLT1D LTR MaLR 0 505 284 2393 97 7 0 chr11 20688164 20688474 -128094998 - AluSx SINE Alu 0 312 1 1224 206 159 61 chr11 20688474 20688686 -128094786 - MLT1D LTR MaLR -221 284 1 270 231 77 11 chr11 20688803 20688894 -128094578 - MIR SINE MIR -7 255 159 442 249 54 63 chr11 20688922 20689127 -128094345 - L1MC4 LINE L1 -4 8038 7836 279 372 16 8 chr11 20689158 20689287 -128094185 - MIR SINE MIR -113 149 20 544 206 27 68 chr11 20689604 20689750 -128093722 + HAL1 LINE L1 1667 1806 -701 269 216 95 0 chr11 20689829 20689903 -128093569 - MER31A LTR ERV1 -8 477 397 1216 180 111 41 chr11 20689922 20690084 -128093388 - MER31A LTR ERV1 -46 435 286 2251 180 41 5 chr11 20690084 20690495 -128092977 + MSTB LTR MaLR 1 426 0 1216 180 111 41 chr11 20690495 20690706 -128092766 - MER31A LTR ERV1 -195 286 1 1833 148 36 16 chr11 20690790 20691095 -128092377 + AluSx SINE Alu 2 312 0 511 251 38 67 chr11 20691097 20691200 -128092272 + HAL1 LINE L1 1973 2077 -430 2389 88 0 3 chr11 20691200 20691497 -128091975 + AluSx SINE Alu 1 296 -16 511 251 38 67 chr11 20691497 20691632 -128091840 + HAL1 LINE L1 2077 2204 -303 459 0 0 0 chr11 20691806 20691857 -128091615 + (TG)n Simple_repeat Simple_repeat 2 52 0 2102 120 17 7 chr11 20692051 20692352 -128091120 + AluSq SINE Alu 1 304 -9 404 333 50 64 chr11 20692489 20693149 -128090323 + L2 LINE L2 2584 3235 -37 21 0 0 0 chr11 20694567 20694588 -128088884 + AT_rich Low_complexity Low_complexity 1 21 0 2201 114 0 3 chr11 20695103 20695393 -128088079 + AluSx SINE Alu 1 289 -23 576 277 252 8 chr11 20695714 20696111 -128087361 + L2 LINE L2 2820 3313 0 260 250 68 68 chr11 20696129 20696229 -128087243 + MIR SINE MIR 111 213 -49 2096 101 10 23 chr11 20696229 20696535 -128086937 + AluY SINE Alu 1 302 -9 260 250 68 68 chr11 20696535 20696582 -128086890 + MIR SINE MIR 212 258 -4 876 227 126 70 chr11 20696710 20697053 -128086419 + MLT1G1 LTR MaLR 2 399 -156 2161 125 0 0 chr11 20697053 20697348 -128086124 - AluSx SINE Alu -17 295 1 876 227 126 70 chr11 20697348 20697515 -128085957 + MLT1G1 LTR MaLR 399 555 0 435 272 0 10 chr11 20697554 20697657 -128085815 - MIR SINE MIR -98 164 63 8302 101 46 17 chr11 20697954 20699008 -128084464 + MER41A-int LTR ERV1 4682 5777 -169 2357 109 0 3 chr11 20699008 20699321 -128084151 - AluSx SINE Alu 0 312 1 8302 101 46 17 chr11 20699321 20699494 -128083978 + MER41A-int LTR ERV1 5777 5944 -2 3964 112 4 7 chr11 20699494 20700050 -128083422 + MER41A LTR ERV1 1 554 0 2059 120 7 0 chr11 20700205 20700504 -128082968 - AluSx SINE Alu -11 301 1 695 226 87 84 chr11 20703040 20703106 -128080366 + L2 LINE L2 2040 2104 -1210 451 178 30 0 chr11 20703106 20703207 -128080265 - L1MA7 LINE L1 -1 6290 6187 695 226 87 84 chr11 20703207 20703415 -128080057 + L2 LINE L2 2104 2315 -999 992 287 128 24 chr11 20703453 20703913 -128079559 - L2 LINE L2 -416 2898 2391 309 146 36 0 chr11 20704476 20704531 -128078941 - L2 LINE L2 -5 3308 3252 1979 155 39 29 chr11 20704979 20705365 -128078107 + MLT1B LTR MaLR 1 390 0 764 215 41 6 chr11 20705381 20705553 -128077919 - MER5B DNA MER1_type 0 178 1 2362 103 0 0 chr11 20705972 20706273 -128077199 + AluSx SINE Alu 3 303 -9 182 212 293 30 chr11 20706275 20706374 -128077098 + L3 LINE CR1 1431 1555 -22 270 337 11 0 chr11 20706520 20706612 -128076860 + MIR3 SINE MIR 110 202 -6 232 192 19 0 chr11 20707473 20707525 -128075947 - MLT2C1 LTR ERVL -3 551 499 282 206 0 0 chr11 20707535 20707608 -128075864 + (TA)n Simple_repeat Simple_repeat 1 73 0 1717 153 27 67 chr11 20707608 20707980 -128075492 - MLT2C1 LTR ERVL -40 357 1 299 340 10 0 chr11 20708158 20708258 -128075214 - MIR3 SINE MIR -10 198 98 615 276 75 152 chr11 20708910 20710382 -128073090 + L2 LINE L2 1349 2707 -607 624 219 56 22 chr11 20710390 20710568 -128072904 - L1ME3A LINE L1 -11 6159 5976 456 285 53 93 chr11 20710615 20710968 -128072504 + L2 LINE L2 2686 3022 -250 606 134 67 0 chr11 20712318 20712452 -128071020 + (CATAC)n Simple_repeat Simple_repeat 1 143 0 493 234 97 97 chr11 20712562 20712601 -128070871 - MER97a DNA MER1_type? -657 237 199 2159 122 3 0 chr11 20712601 20712896 -128070576 - AluSg SINE Alu -14 296 1 493 234 97 97 chr11 20712896 20713083 -128070389 - MER97a DNA MER1_type? -694 200 11 232 279 41 57 chr11 20713113 20713235 -128070237 - L2 LINE L2 -1103 2211 2092 742 205 195 17 chr11 20714034 20714420 -128069052 + MLT1H LTR MaLR 57 549 0 572 260 64 59 chr11 20715600 20715819 -128067653 + MIR SINE MIR 43 262 0 40 0 0 0 chr11 20715829 20715869 -128067603 + AT_rich Low_complexity Low_complexity 1 40 0 365 245 99 7 chr11 20715989 20716118 -128067354 - MIR SINE MIR -66 142 19 1930 51 0 0 chr11 20716129 20716365 -128067107 - L1PA7 LINE L1 -6 6148 5913 338 370 54 27 chr11 20716473 20716657 -128066815 - MER5A DNA MER1_type 0 189 1 571 273 5 72 chr11 20716818 20717012 -128066460 - L2 LINE L2 -1 3312 3132 4505 194 30 16 chr11 20717024 20718962 -128064510 + L1MB4 LINE L1 4212 6178 -2 26 30 0 0 chr11 20719121 20719154 -128064318 + AT_rich Low_complexity Low_complexity 1 33 0 330 67 0 0 chr11 20719293 20719338 -128064134 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr11 20719337 20719362 -128064110 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 253 137 0 0 chr11 20719390 20719441 -128064031 - L1MA3 LINE L1 0 6305 6255 1990 100 40 31 chr11 20719442 20719793 -128063679 + L1MA2 LINE L1 5896 6249 -55 7132 242 17 43 chr11 20719810 20720461 -128063011 - L1 LINE L1 -1809 5756 5089 1878 126 54 0 chr11 20720461 20720738 -128062734 - AluSx SINE Alu -20 292 1 7132 242 17 43 chr11 20720738 20720895 -128062577 - L1 LINE L1 -2476 5089 4929 1902 174 0 0 chr11 20720895 20721199 -128062273 - AluJb SINE Alu -8 304 1 7132 242 17 43 chr11 20721199 20722525 -128060947 - L1 LINE L1 -2636 4929 3677 6680 117 42 2 chr11 20722549 20723656 -128059816 + L1PBa LINE L1 1058 2208 -4655 4201 32 0 0 chr11 20723656 20724150 -128059322 + L1PA5 LINE L1 5653 6146 -8 32 26 0 0 chr11 20724150 20724189 -128059283 + AT_rich Low_complexity Low_complexity 1 39 0 12041 167 50 9 chr11 20724206 20725341 -128058131 - L1 LINE L1 -5233 2332 1245 1942 153 18 24 chr11 20725341 20725680 -128057792 - MER1B DNA MER1_type 0 337 1 12041 167 50 9 chr11 20725680 20726767 -128056705 - L1 LINE L1 -6320 1245 19 2218 188 153 63 chr11 20726960 20727727 -128055745 - L1ME2 LINE L1 -9 6224 5389 2108 219 78 40 chr11 20727733 20728562 -128054910 - L1ME2 LINE L1 -874 5341 4481 1543 252 56 90 chr11 20728679 20729894 -128053578 - L1ME2 LINE L1 -4598 1798 625 1238 174 97 0 chr11 20729940 20730198 -128053274 + MER7A DNA MER2_type 66 346 0 304 363 17 20 chr11 20730283 20730578 -128052894 - L1ME2 LINE L1 -5867 529 236 579 274 25 6 chr11 20731021 20731178 -128052294 - MIR SINE MIR 0 262 103 345 310 0 0 chr11 20731270 20731357 -128052115 + MIR3 SINE MIR 81 167 -41 195 292 136 7 chr11 20731591 20731701 -128051771 + MIR SINE MIR 36 150 -65 1818 125 104 0 chr11 20732252 20732531 -128050941 + AluSg SINE Alu 1 308 -2 2208 104 14 0 chr11 20732753 20733041 -128050431 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr11 20733041 20733066 -128050406 + AT_rich Low_complexity Low_complexity 1 25 0 313 273 69 24 chr11 20737343 20737466 -128046006 + MIR SINE MIR 19 145 -71 231 284 18 0 chr11 20737675 20737784 -128045688 + L1ME4a LINE L1 5995 6105 -16 605 218 13 26 chr11 20738940 20739096 -128044376 - MER103 DNA DNA -12 154 1 358 291 11 78 chr11 20739232 20739337 -128044135 + L3 LINE CR1 672 762 -815 1618 221 70 27 chr11 20739337 20739821 -128043651 - MLT1D LTR MaLR 0 505 1 358 291 11 78 chr11 20739821 20739894 -128043578 + L3 LINE CR1 762 838 -739 189 244 116 23 chr11 20739946 20740032 -128043440 - L2 LINE L2 0 3313 3220 904 220 4 70 chr11 20740178 20740350 -128043122 + MIR SINE MIR 50 205 -57 1700 126 112 4 chr11 20740350 20740619 -128042853 + AluSx SINE Alu 5 302 -10 904 220 4 70 chr11 20740619 20740673 -128042799 + MIR SINE MIR 205 261 -1 457 351 157 19 chr11 20740704 20741029 -128042443 + L3 LINE CR1 1119 1488 -89 195 42 0 0 chr11 20741153 20741177 -128042295 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 209 347 71 25 chr11 20741509 20741748 -128041724 - L2 LINE L2 -339 2975 2726 982 163 98 20 chr11 20741975 20742178 -128041294 - MER20 DNA MER1_type 0 219 1 248 322 112 54 chr11 20743258 20743500 -128039972 + L2 LINE L2 3017 3272 0 293 288 131 42 chr11 20743546 20743732 -128039740 - L1ME4a LINE L1 -22 6099 5931 2144 125 0 0 chr11 20743732 20744027 -128039445 + AluSx SINE Alu 1 295 -17 293 288 131 42 chr11 20744027 20744315 -128039157 - L1ME4a LINE L1 -190 5931 5583 332 241 0 58 chr11 20744535 20744622 -128038850 - MIR SINE MIR -111 151 70 456 225 147 31 chr11 20744978 20745107 -128038365 - MIR3 SINE MIR -12 196 53 362 187 31 31 chr11 20745424 20745523 -128037949 - MER5A DNA MER1_type 0 178 80 34 24 0 0 chr11 20746443 20746484 -128036988 + AT_rich Low_complexity Low_complexity 1 41 0 307 339 33 25 chr11 20747731 20747852 -128035620 - L2 LINE L2 0 3272 3151 1537 242 75 71 chr11 20748210 20748773 -128034699 - MLT1G1 LTR MaLR -30 565 1 204 302 23 12 chr11 20749361 20749447 -128034025 + MIR SINE MIR 176 262 0 1926 146 10 0 chr11 20750288 20750589 -128032883 + AluJb SINE Alu 1 304 -8 612 147 39 32 chr11 20750591 20750747 -128032725 + L1M4 LINE L1 5642 5798 -386 2242 160 28 7 chr11 20750848 20751285 -128032187 + L1MB7 LINE L1 5728 6173 -11 722 180 193 12 chr11 20751341 20751585 -128031887 + LTR50 LTR ERVL 1 288 -507 408 275 80 14 chr11 20751615 20751898 -128031574 + LTR50 LTR ERVL 346 522 -1 244 0 0 0 chr11 20751972 20751999 -128031473 + (TTTG)n Simple_repeat Simple_repeat 2 120 0 2132 80 0 0 chr11 20751999 20752262 -128031210 - AluY SINE Alu -1 309 21 22 56 0 0 chr11 20752374 20752410 -128031062 + AT_rich Low_complexity Low_complexity 1 36 0 515 250 26 6 chr11 20752510 20752666 -128030806 - MER103 DNA DNA -3 163 5 296 277 19 39 chr11 20752859 20753014 -128030458 + L1M4 LINE L1 3886 4037 -2109 2100 166 7 48 chr11 20753183 20753538 -128029934 - L1MB5 LINE L1 -87 6087 5752 2072 129 14 3 chr11 20753538 20753832 -128029640 + AluSx SINE Alu 1 297 -15 2100 166 7 48 chr11 20753832 20753911 -128029561 - L1MB5 LINE L1 -422 5752 5671 302 246 104 52 chr11 20754024 20754158 -128029314 + L1ME4a LINE L1 5969 6109 -12 245 344 106 37 chr11 20754190 20754463 -128029009 - L2 LINE L2 -1490 1824 1533 367 123 0 15 chr11 20754669 20754734 -128028738 - LTR54 LTR ERV1 -4 506 443 946 218 36 26 chr11 20754746 20755085 -128028387 - MER57B LTR ERV1 -80 323 1 286 181 14 14 chr11 20755195 20755267 -128028205 + CT-rich Low_complexity Low_complexity 1 72 0 1887 115 42 0 chr11 20755267 20755528 -128027944 - AluSx SINE Alu -40 272 1 1078 282 93 19 chr11 20755889 20756364 -128027108 - MLT1J LTR MaLR 0 511 2 1698 189 3 13 chr11 20757513 20757815 -128025657 - AluJo SINE Alu -13 299 1 830 284 16 29 chr11 20758304 20758547 -128024925 - MIR SINE MIR -15 247 8 2051 232 78 36 chr11 20758734 20759403 -128024069 + MER20B DNA MER1_type 2 698 -85 304 269 62 48 chr11 20759980 20760125 -128023347 + L2 LINE L2 3167 3313 0 24 32 0 0 chr11 20760407 20760438 -128023034 + AT_rich Low_complexity Low_complexity 1 31 0 282 289 21 10 chr11 20760446 20760543 -128022929 - MIR SINE MIR -31 231 134 251 53 0 26 chr11 20760543 20760581 -128022891 + (TG)n Simple_repeat Simple_repeat 2 38 0 2148 84 4 4 chr11 20760596 20760871 -128022601 - AluSg SINE Alu -15 295 21 219 196 151 74 chr11 20760876 20760984 -128022488 - MIR SINE MIR -66 142 20 923 200 6 17 chr11 20762031 20762211 -128021261 + MER45A DNA AcHobo 1 178 0 273 242 50 40 chr11 20763116 20763215 -128020257 + MIR SINE MIR 53 152 -110 289 269 32 11 chr11 20765224 20765317 -128018155 - MIR SINE MIR -60 202 108 671 186 119 83 chr11 20766276 20766739 -128016733 - LTR48 LTR ERV1 -4 781 90 744 280 40 8 chr11 20766754 20767075 -128016397 + MER57B LTR ERV1 4 310 -93 1104 154 0 6 chr11 20767076 20767251 -128016221 - FAM SINE Alu -1 174 1 264 204 0 0 chr11 20767270 20767324 -128016148 + LTR54 LTR ERV1 427 480 -30 1405 161 16 4 chr11 20767329 20767577 -128015895 - MER57A LTR ERV1 0 403 153 671 174 60 27 chr11 20767577 20767726 -128015746 - MER57A-int LTR ERV1 -1559 5978 5825 286 136 0 0 chr11 20768053 20768097 -128015375 - MER57A-int LTR ERV1 -1716 5821 5778 4652 196 64 65 chr11 20768140 20768963 -128014509 - MER57A-int LTR ERV1 -1494 3442 2620 2200 145 0 3 chr11 20768963 20769274 -128014198 + AluSx SINE Alu 1 310 -2 4652 196 64 65 chr11 20769274 20770121 -128013351 - MER57A-int LTR ERV1 -2316 2620 1841 2023 125 11 11 chr11 20770121 20770408 -128013064 + AluSx SINE Alu 1 287 -25 4652 196 64 65 chr11 20770408 20770543 -128012929 - MER57A-int LTR ERV1 -3095 1841 1707 576 147 25 189 chr11 20770637 20770875 -128012597 - MER57A-int LTR ERV1 -2869 3462 3264 759 180 10 78 chr11 20770927 20771133 -128012339 - MER57A-int LTR ERV1 -3059 3272 3081 2276 194 11 59 chr11 20771186 20771744 -128011728 - MER57A-int LTR ERV1 -6873 664 134 1747 157 50 107 chr11 20771867 20772027 -128011445 - MER57A LTR ERV1 -4 399 231 2118 142 0 0 chr11 20772027 20772330 -128011142 + AluSx SINE Alu 1 303 -9 1747 157 50 107 chr11 20772330 20772590 -128010882 - MER57A LTR ERV1 -172 231 3 397 186 0 0 chr11 20772621 20772691 -128010781 - MER34C LTR ERV1 -510 75 6 2288 116 59 9 chr11 20773358 20774002 -128009470 - L1M1 LINE L1 -684 5621 4952 1353 227 23 17 chr11 20774052 20774405 -128009067 - MER4D LTR ERV1 0 903 549 1616 150 22 0 chr11 20774441 20774715 -128008757 - MER49 LTR ERV1 -643 280 1 264 209 22 99 chr11 20774772 20774863 -128008609 + MIR SINE MIR 108 191 -71 216 235 321 0 chr11 20775767 20775848 -128007624 - L2 LINE L2 -4 3309 3203 205 133 22 22 chr11 20776451 20776496 -128006976 + A-rich Low_complexity Low_complexity 3 47 0 478 196 43 22 chr11 20778462 20778554 -128004918 - AluJo SINE Alu -92 220 127 658 91 0 4 chr11 20778646 20778750 -128004722 - L1PA5 LINE L1 -198 5963 5863 22 0 0 0 chr11 20778762 20778784 -128004688 + AT_rich Low_complexity Low_complexity 1 22 0 1682 118 118 22 chr11 20779691 20779962 -128003510 + AluSq SINE Alu 1 297 -16 207 69 0 0 chr11 20780682 20780711 -128002761 + (CA)n Simple_repeat Simple_repeat 1 29 0 372 241 141 16 chr11 20780750 20780941 -128002531 - MER5C DNA MER1_type -5 319 105 513 240 40 8 chr11 20780945 20781070 -128002402 + FLAM_A SINE Alu 1 129 -4 2734 226 55 25 chr11 20781353 20782149 -128001323 - L1ME1 LINE L1 -33 6133 5314 417 310 117 23 chr11 20782456 20782891 -128000581 - L1ME4a LINE L1 -113 6008 5533 2262 123 0 0 chr11 20783202 20783502 -127999970 - AluSx SINE Alu -12 300 1 271 303 97 0 chr11 20783608 20783803 -127999669 - L1ME4a LINE L1 -1129 5017 4804 424 331 58 84 chr11 20783855 20784200 -127999272 - L1ME4a LINE L1 -1368 4778 4456 2192 115 10 3 chr11 20784200 20784504 -127998968 - AluSx SINE Alu -6 306 1 424 331 58 84 chr11 20784504 20784798 -127998674 - L1ME4a LINE L1 -1690 4456 4156 2395 81 3 0 chr11 20784974 20785271 -127998201 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr11 20785293 20785321 -127998151 + AT_rich Low_complexity Low_complexity 1 28 0 3223 208 57 33 chr11 20785630 20787130 -127996342 - L1ME1 LINE L1 -5 6161 4639 53 69 0 0 chr11 20787145 20787247 -127996225 + AT_rich Low_complexity Low_complexity 1 102 0 4772 229 49 26 chr11 20787253 20788699 -127994773 - L1ME1 LINE L1 -1498 4648 3161 243 0 0 0 chr11 20788699 20788726 -127994746 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4772 229 49 26 chr11 20788726 20788900 -127994572 - L1ME1 LINE L1 -2985 3161 2992 223 256 167 0 chr11 20788976 20789066 -127994406 - MER5C DNA MER1_type -219 105 1 2036 116 11 0 chr11 20789086 20789362 -127994110 + AluSx SINE Alu 1 279 -33 2033 162 0 0 chr11 20789721 20790029 -127993443 - AluJb SINE Alu -4 308 1 228 321 111 0 chr11 20790090 20790171 -127993301 - MIR SINE MIR -82 126 37 336 48 0 0 chr11 20790251 20790293 -127993179 + (TG)n Simple_repeat Simple_repeat 2 43 0 241 275 0 29 chr11 20791590 20791659 -127991813 - L2 LINE L2 0 3313 3247 236 250 54 36 chr11 20792621 20792733 -127990739 - MLT1J LTR MaLR -14 497 384 309 284 84 0 chr11 20792864 20792959 -127990513 - MLT1J LTR MaLR -339 172 70 410 292 130 7 chr11 20793260 20793414 -127990058 - MIR SINE MIR 0 262 90 275 322 11 0 chr11 20793889 20793976 -127989496 + CT-rich Low_complexity Low_complexity 1 88 0 621 254 98 5 chr11 20794331 20794524 -127988948 - MIR SINE MIR -32 230 20 299 280 73 7 chr11 20795004 20795138 -127988334 + MIR SINE MIR 9 136 -72 812 287 9 9 chr11 20795497 20795713 -127987759 - MIR SINE MIR -17 245 30 297 125 0 0 chr11 20795766 20795822 -127987650 + (T)n Simple_repeat Simple_repeat 1 56 0 838 209 46 98 chr11 20795822 20796217 -127987255 + MLT1H LTR MaLR 73 545 -10 218 301 58 10 chr11 20796233 20796336 -127987136 + MIR SINE MIR 70 177 -85 214 127 36 36 chr11 20796992 20797047 -127986425 + T-rich Low_complexity Low_complexity 2 56 0 613 198 107 113 chr11 20799121 20799439 -127984033 + MER46C DNA MER2_type 14 329 -9 353 345 108 0 chr11 20799655 20799794 -127983678 - MIR SINE MIR 0 262 109 1840 98 0 0 chr11 20800300 20800535 -127982937 + AluSc SINE Alu 71 305 -4 363 333 45 41 chr11 20800558 20800774 -127982698 - MIR SINE MIR -42 220 1 305 311 46 73 chr11 20800794 20800945 -127982527 - L2 LINE L2 -111 3161 3015 298 299 24 31 chr11 20800963 20801045 -127982427 - L2 LINE L2 -5 3308 3226 708 274 29 24 chr11 20801045 20801253 -127982219 + MER63A DNA MER1_type 2 210 0 298 299 24 31 chr11 20801253 20801297 -127982175 - L2 LINE L2 -87 3226 3183 5576 181 48 32 chr11 20801304 20801868 -127981604 + Charlie1a DNA MER1_type 55 608 -2153 2320 82 0 0 chr11 20801868 20802174 -127981298 - AluSg SINE Alu 0 306 1 5576 181 48 32 chr11 20802174 20802987 -127980485 + Charlie1a DNA MER1_type 608 1455 0 198 0 0 0 chr11 20803270 20803292 -127980180 + (ATCTG)n Simple_repeat Simple_repeat 1 22 0 2292 113 0 0 chr11 20803868 20804170 -127979302 + AluSx SINE Alu 1 302 -10 318 309 144 0 chr11 20804743 20804840 -127978632 + L2 LINE L2 3154 3264 -8 184 303 115 57 chr11 20804938 20805060 -127978412 - L2 LINE L2 -5 3308 3180 808 173 0 0 chr11 20805292 20805425 -127978047 + AluSq/x SINE Alu 1 133 -180 1770 183 0 3 chr11 20805430 20805725 -127977747 + AluJb SINE Alu 1 294 -18 32 0 0 0 chr11 20806447 20806479 -127976993 + AT_rich Low_complexity Low_complexity 1 32 0 329 91 0 0 chr11 20806481 20806525 -127976947 - MADE1 DNA Mariner -35 45 2 247 305 9 19 chr11 20807314 20807419 -127976053 - MIR SINE MIR -82 180 77 27 29 0 0 chr11 20807809 20807843 -127975629 + AT_rich Low_complexity Low_complexity 1 34 0 292 299 39 7 chr11 20808054 20808237 -127975235 + L1ME LINE L1 5323 5480 -682 296 310 55 35 chr11 20808304 20808449 -127975023 - MIR3 SINE MIR 0 208 61 196 191 43 21 chr11 20808956 20809003 -127974469 - MIR SINE MIR -57 205 158 405 0 0 0 chr11 20809160 20809205 -127974267 + (TG)n Simple_repeat Simple_repeat 1 45 0 457 343 78 8 chr11 20810105 20810350 -127973122 + L1MDa LINE L1 59 320 -6220 1262 190 36 0 chr11 20810488 20810709 -127972763 + AluJo SINE Alu 1 229 -83 221 0 35 0 chr11 20810710 20810739 -127972733 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1905 156 17 0 chr11 20810757 20811045 -127972427 - AluSq SINE Alu -17 296 4 803 126 25 6 chr11 20811093 20811252 -127972220 + GA-rich Low_complexity Low_complexity 1 162 0 886 79 39 0 chr11 20811315 20811442 -127972030 - MER65A LTR ERV1 0 445 314 1797 129 79 0 chr11 20811443 20811721 -127971751 - AluSx SINE Alu -11 301 2 6595 41 1 23 chr11 20811744 20812233 -127971239 - L1PA7 LINE L1 0 6154 5656 229 0 54 27 chr11 20812233 20812270 -127971202 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2110 100 0 4 chr11 20812275 20812554 -127970918 - AluSg SINE Alu -27 283 6 6595 41 1 23 chr11 20812554 20812880 -127970592 - L1PA7 LINE L1 -502 5652 5351 1995 122 41 16 chr11 20812880 20813199 -127970273 - MER65A LTR ERV1 -118 327 1 2223 100 6 6 chr11 20814116 20814427 -127969045 + L1PA8A LINE L1 5794 6104 -27 195 42 0 0 chr11 20814432 20814456 -127969016 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2187 188 97 77 chr11 20814459 20815280 -127968192 + MER31-int LTR ERV1 930 2414 -2457 491 255 7 7 chr11 20815309 20815454 -127968018 + MER31-int LTR ERV1 1679 1823 -3113 197 274 0 0 chr11 20815843 20815894 -127967578 + L2 LINE L2 3263 3313 0 25 0 0 0 chr11 20816309 20816334 -127967138 + AT_rich Low_complexity Low_complexity 1 25 0 403 331 56 7 chr11 20816402 20816590 -127966882 + MIR SINE MIR 9 202 -60 1680 185 6 13 chr11 20816607 20816921 -127966551 + AluJb SINE Alu 1 312 0 308 274 19 15 chr11 20816938 20817057 -127966415 - MLT1L LTR MaLR 0 615 472 500 218 0 35 chr11 20819351 20819525 -127963947 + CT-rich Low_complexity Low_complexity 3 170 0 3632 143 58 16 chr11 20820235 20820859 -127962613 - MER39B LTR ERV1 0 653 4 2446 86 0 0 chr11 20821194 20821497 -127961975 - AluY SINE Alu -8 303 1 227 234 65 26 chr11 20821846 20821923 -127961549 - MER5A DNA MER1_type 0 189 110 259 237 70 60 chr11 20821994 20822203 -127961269 + MLT1K LTR MaLR 369 611 -4 189 259 17 17 chr11 20822244 20822302 -127961170 - MIR SINE MIR -82 180 123 1953 99 0 0 chr11 20822509 20822762 -127960710 - AluSx SINE Alu -59 253 1 630 231 20 27 chr11 20822763 20822910 -127960562 - MIR SINE MIR -102 160 15 221 226 38 0 chr11 20824403 20824456 -127959016 + MIR3 SINE MIR 151 205 -3 1913 157 7 0 chr11 20825699 20825993 -127957479 + AluSx SINE Alu 1 296 -16 786 135 0 0 chr11 20826527 20826631 -127956841 + AluY SINE Alu 2 105 -206 1930 115 0 0 chr11 20826633 20826894 -127956578 + AluY SINE Alu 37 297 -14 671 105 0 0 chr11 20827074 20827160 -127956312 - AluS SINE Alu -226 87 2 1544 111 5 0 chr11 20828784 20828991 -127954481 + AluY SINE Alu 1 208 -103 330 196 21 41 chr11 20829057 20829154 -127954318 - L1M4 LINE L1 -3643 2503 2409 333 92 92 103 chr11 20830441 20830528 -127952944 + LTR49-int LTR ERV1 1457 1542 -4789 276 211 18 18 chr11 20830530 20830587 -127952885 + MER67B LTR ERV1 146 202 -459 2849 175 74 55 chr11 20830589 20831173 -127952299 + MER31-int LTR ERV1 292 864 -4072 706 200 9 0 chr11 20831173 20831288 -127952184 + FLAM_A SINE Alu 1 116 -17 222 91 0 0 chr11 20831292 20831325 -127952147 + (CA)n Simple_repeat Simple_repeat 2 34 0 2849 175 74 55 chr11 20831325 20831442 -127952030 + MER31-int LTR ERV1 866 928 -4008 22652 142 20 19 chr11 20831449 20835398 -127948074 + L1P3 LINE L1 2 4025 -2436 195 42 0 0 chr11 20835398 20835422 -127948050 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22652 142 20 19 chr11 20835422 20836446 -127947026 + L1P3 LINE L1 4025 5046 -1415 427 270 109 35 chr11 20837085 20837259 -127946213 - MIR SINE MIR -56 206 20 2271 119 0 3 chr11 20837403 20837714 -127945758 + AluSx SINE Alu 1 310 -2 181 189 27 0 chr11 20837801 20837838 -127945634 + L3 LINE CR1 1537 1574 -3 21 36 0 0 chr11 20838657 20838685 -127944787 + AT_rich Low_complexity Low_complexity 1 28 0 351 305 161 6 chr11 20839659 20839833 -127943639 - MIR SINE MIR -44 218 18 913 232 63 56 chr11 20840066 20840480 -127942992 + L1MC5 LINE L1 7501 7917 -44 428 288 12 44 chr11 20841519 20841679 -127941793 - MIR SINE MIR -73 189 35 470 245 135 12 chr11 20842059 20842222 -127941250 - L2 LINE L2 0 3313 3131 413 271 98 94 chr11 20842420 20842623 -127940849 + MIR SINE MIR 48 251 -11 1105 233 134 65 chr11 20842845 20843170 -127940302 + MER34 LTR ERV1 15 387 -155 1956 128 3 42 chr11 20843170 20843483 -127939989 + AluSx SINE Alu 1 301 -11 1105 233 134 65 chr11 20843483 20843651 -127939821 + MER34 LTR ERV1 387 542 0 1113 79 7 0 chr11 20843795 20843935 -127939537 - AluSp SINE Alu -122 191 51 2259 116 0 0 chr11 20844472 20844775 -127938697 - AluSx SINE Alu -9 303 1 325 219 49 37 chr11 20844851 20844933 -127938539 + L2 LINE L2 3231 3313 0 612 213 63 116 chr11 20845974 20846242 -127937230 + MIR SINE MIR 9 262 0 289 314 31 78 chr11 20846550 20846741 -127936731 + MER5A DNA MER1_type 8 189 0 195 100 0 0 chr11 20847119 20847149 -127936323 + (A)n Simple_repeat Simple_repeat 1 30 0 1590 204 30 50 chr11 20847192 20847588 -127935884 + MLT1B LTR MaLR 3 390 0 46 33 0 0 chr11 20848584 20848644 -127934828 + AT_rich Low_complexity Low_complexity 1 60 0 2108 126 0 3 chr11 20848647 20848940 -127934532 - AluSx SINE Alu -20 292 1 2497 162 27 11 chr11 20848960 20849399 -127934073 - L1MB8 LINE L1 -70 6108 5663 2653 43 0 0 chr11 20849405 20849706 -127933766 - AluY SINE Alu -10 301 1 2889 193 58 4 chr11 20849750 20850283 -127933189 + MER68 LTR ERV1 1 562 0 253 338 59 0 chr11 20850940 20851008 -127932464 + MIR SINE MIR 12 83 -179 1894 147 7 0 chr11 20851009 20851342 -127932130 - AluSx SINE Alu 0 335 1 1362 191 29 22 chr11 20851762 20852035 -127931437 + MER31-int LTR ERV1 3986 4260 -676 288 225 150 12 chr11 20852035 20852115 -127931357 + LTR37A LTR ERV1 4 94 -332 587 202 54 0 chr11 20852115 20852244 -127931228 + MER31-int LTR ERV1 4334 4469 -467 569 228 78 36 chr11 20852273 20852440 -127931032 + MER34 LTR ERV1 369 542 0 333 340 47 35 chr11 20852467 20852699 -127930773 - MLT1K LTR MaLR -285 303 69 29 47 0 0 chr11 20852806 20852849 -127930623 + AT_rich Low_complexity Low_complexity 1 43 0 552 288 0 0 chr11 20852911 20853029 -127930443 - L2 LINE L2 -8 3305 3188 375 255 166 19 chr11 20853537 20853694 -127929778 - MIR SINE MIR -17 245 66 225 282 64 0 chr11 20853700 20853778 -127929694 + MIR3 SINE MIR 125 207 -1 1564 203 3 19 chr11 20853827 20854143 -127929329 + AluJb SINE Alu 1 311 -1 907 78 9 0 chr11 20854151 20854266 -127929206 + AluSq/x SINE Alu 18 133 -179 2030 107 21 4 chr11 20854269 20854549 -127928923 + AluSx SINE Alu 1 285 -27 663 223 122 5 chr11 20854588 20854776 -127928696 - MIR SINE MIR -41 221 12 245 164 0 18 chr11 20855617 20855672 -127927800 + CT-rich Low_complexity Low_complexity 5 58 0 24 0 0 0 chr11 20856205 20856229 -127927243 + AT_rich Low_complexity Low_complexity 1 24 0 1061 76 8 0 chr11 20856229 20856360 -127927112 + AluSq/x SINE Alu 1 132 -180 253 325 172 7 chr11 20856532 20856683 -127926789 + MER5B DNA MER1_type 1 176 -2 293 353 75 29 chr11 20856730 20856903 -127926569 - MIR SINE MIR -62 200 20 2602 105 21 16 chr11 20857171 20857544 -127925928 - THE1C LTR MaLR 0 375 1 1324 229 168 20 chr11 20857549 20857989 -127925483 + MLT1D LTR MaLR 1 505 0 296 278 56 0 chr11 20858497 20858587 -127924885 - L2 LINE L2 -17 3296 3202 285 238 48 12 chr11 20858629 20858713 -127924759 - MIR SINE MIR -162 100 14 1570 266 61 18 chr11 20858719 20859211 -127924261 - LTR33 LTR ERVL 0 521 9 1264 179 95 8 chr11 20859211 20859473 -127923999 + AluJb SINE Alu 21 305 -7 232 231 47 77 chr11 20859485 20859719 -127923753 + MER113 DNA MER1_type? 1 227 -294 21 0 0 0 chr11 20860390 20860411 -127923061 + AT_rich Low_complexity Low_complexity 1 21 0 277 322 122 17 chr11 20860716 20860831 -127922641 + LTR33 LTR ERVL 32 158 -363 212 276 8 0 chr11 20861318 20861395 -127922077 - MIR SINE MIR -63 145 67 210 327 0 0 chr11 20861779 20861831 -127921641 + L2 LINE L2 3211 3262 -10 626 219 118 105 chr11 20861855 20862231 -127921241 - MLT1J LTR MaLR -3 468 123 2328 42 38 3 chr11 20862233 20862572 -127920900 + MER11A LTR ERVK 1 445 -821 24 0 0 0 chr11 20862572 20862596 -127920876 + AT_rich Low_complexity Low_complexity 1 24 0 315 253 58 11 chr11 20862596 20862683 -127920789 - L1MC4 LINE L1 -1339 6703 6613 434 152 56 0 chr11 20862684 20862809 -127920663 + (TA)n Simple_repeat Simple_repeat 1 132 0 1847 187 29 40 chr11 20862841 20863052 -127920420 + L1ME2 LINE L1 5643 5855 -309 572 169 104 122 chr11 20863052 20863331 -127920141 - ORSL DNA AcHobo 0 275 2 1847 187 29 40 chr11 20863331 20863568 -127919904 + L1ME2 LINE L1 5855 6086 -78 641 336 168 20 chr11 20863811 20864401 -127919071 + L3 LINE CR1 864 1540 -37 1484 137 164 8 chr11 20864616 20864878 -127918594 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 20865197 20865218 -127918254 + AT_rich Low_complexity Low_complexity 1 21 0 260 241 0 0 chr11 20865865 20865923 -127917549 + Charlie7 DNA MER1_type 2458 2515 -97 232 255 133 20 chr11 20865988 20866086 -127917386 + L2 LINE L2 3204 3312 -1 2093 117 11 0 chr11 20866428 20866709 -127916763 - AluSx SINE Alu -28 284 1 25 0 0 0 chr11 20866711 20866736 -127916736 + AT_rich Low_complexity Low_complexity 1 25 0 299 302 145 0 chr11 20866792 20866951 -127916521 - MIR3 SINE MIR -11 197 16 516 156 80 13 chr11 20867013 20867118 -127916354 + MLT1D LTR MaLR 1 91 -414 1675 178 78 24 chr11 20867322 20867692 -127915780 + MLT1D LTR MaLR 116 505 0 599 196 108 13 chr11 20867726 20867884 -127915588 - L1ME3A LINE L1 0 6170 5998 735 155 52 0 chr11 20869757 20869873 -127913599 + FLAM_A SINE Alu 1 122 -11 1787 123 9 93 chr11 20870263 20870587 -127912885 + AluJb SINE Alu 1 297 -15 1364 184 55 52 chr11 20870802 20871050 -127912422 - MER58B DNA MER1_type -2079 341 90 2563 55 0 0 chr11 20871050 20871341 -127912131 + AluY SINE Alu 1 291 -20 1364 184 55 52 chr11 20871341 20871401 -127912071 - MER58B DNA MER1_type -2330 90 32 299 308 0 11 chr11 20871882 20871973 -127911499 - MER5A DNA MER1_type -22 167 78 1722 154 50 85 chr11 20872142 20872544 -127910928 + MLT1B LTR MaLR 3 390 0 274 336 0 27 chr11 20874949 20875059 -127908413 + MIR SINE MIR 47 153 -109 184 314 144 20 chr11 20875068 20875221 -127908251 + MER5A DNA MER1_type 14 185 -4 2324 72 0 14 chr11 20875387 20875677 -127907795 + AluY SINE Alu 26 311 0 2347 88 0 16 chr11 20876190 20876496 -127906976 + AluSx SINE Alu 1 301 -11 246 62 0 0 chr11 20878122 20878154 -127905318 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 229 0 0 chr11 20879089 20879159 -127904313 - L1ME2 LINE L1 0 6164 6095 423 0 0 0 chr11 20929188 20929235 -127854237 + (TA)n Simple_repeat Simple_repeat 2 48 0 329 151 0 0 chr11 20929235 20929288 -127854184 - Tigger1 DNA MER2_type -2365 53 1 1291 182 70 22 chr11 20929288 20929601 -127853871 + MLT1A1 LTR MaLR 38 365 0 1802 245 99 6 chr11 20929605 20930140 -127853332 + L2 LINE L2 2033 2617 -697 917 193 36 5 chr11 20930186 20930378 -127853094 + Charlie1a DNA MER1_type 30 227 -1228 1143 108 0 0 chr11 20930378 20930554 -127852918 - AluSp SINE Alu 0 310 135 692 208 15 8 chr11 20930600 20930750 -127852722 + FLAM_A SINE Alu 1 151 0 2395 106 0 0 chr11 20930756 20931068 -127852404 + AluSx SINE Alu 1 312 0 2574 188 98 19 chr11 20931073 20931907 -127851565 + Charlie1a DNA MER1_type 282 1236 -219 1163 176 21 47 chr11 20931907 20932140 -127851332 + AluJb SINE Alu 1 227 -85 513 301 78 30 chr11 20932514 20932913 -127850559 + L1ME LINE L1 5366 5783 -379 937 176 18 12 chr11 20932956 20933126 -127850346 + AluJo SINE Alu 112 282 -30 229 123 62 92 chr11 20934514 20934579 -127848893 + L1ME2 LINE L1 653 715 -5681 649 270 205 37 chr11 20934642 20935155 -127848317 + L1ME2 LINE L1 874 1299 -5097 2012 151 0 3 chr11 20935155 20935454 -127848018 + AluSx SINE Alu 1 298 -14 649 270 205 37 chr11 20935454 20936028 -127847444 + L1ME2 LINE L1 1299 2144 -4252 1171 253 58 27 chr11 20936163 20936777 -127846695 + L1ME2 LINE L1 5555 6224 -9 300 300 61 61 chr11 20937102 20937282 -127846190 - MIR SINE MIR -73 189 10 2173 116 0 3 chr11 20938321 20938615 -127844857 + AluSx SINE Alu 1 293 -19 24 53 0 0 chr11 20938681 20938719 -127844753 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 20938790 20938812 -127844660 + AT_rich Low_complexity Low_complexity 1 22 0 972 129 139 21 chr11 20939612 20939806 -127843666 + Tigger1 DNA MER2_type 2202 2418 0 668 206 100 0 chr11 20939851 20940011 -127843461 - L2 LINE L2 -1307 2007 1832 1679 188 47 43 chr11 20940011 20940243 -127843229 + L1ME2 LINE L1 5679 5909 -255 1401 176 23 106 chr11 20940243 20940426 -127843046 + MLT1A1 LTR MaLR 1 135 -230 1623 140 3 81 chr11 20940426 20940748 -127842724 - AluJo SINE Alu -15 297 1 1401 176 23 106 chr11 20940748 20940962 -127842510 + MLT1A1 LTR MaLR 135 365 0 1679 188 47 43 chr11 20940962 20941197 -127842275 + L1ME2 LINE L1 5909 6148 -16 503 226 200 5 chr11 20941200 20941395 -127842077 - L2 LINE L2 -1482 1832 1600 886 223 196 12 chr11 20941404 20941750 -127841722 - L2 LINE L2 -2296 1018 609 385 226 0 0 chr11 20941752 20941836 -127841636 + L1ME2 LINE L1 6063 6146 -18 580 298 77 26 chr11 20941860 20942209 -127841263 - L2 LINE L2 -2695 619 253 307 274 69 20 chr11 20942209 20942311 -127841161 - L2 LINE L2 -3180 134 28 2092 63 0 0 chr11 20942845 20943113 -127840359 - L1PA5 LINE L1 0 6154 5887 1843 154 0 3 chr11 20943543 20943835 -127839637 + AluJb SINE Alu 1 291 -21 2246 98 3 0 chr11 20944273 20944569 -127838903 - AluSq SINE Alu -16 297 1 1020 215 18 9 chr11 20944689 20944908 -127838564 - MER58A DNA MER1_type 0 224 4 433 145 15 99 chr11 20946057 20946125 -127837347 + Charlie1a DNA MER1_type 1335 1388 -1373 2129 95 7 20 chr11 20946125 20946429 -127837043 - AluSx SINE Alu -12 300 1 433 145 15 99 chr11 20946429 20946491 -127836981 + Charlie1a DNA MER1_type 1388 1454 -1 981 254 152 22 chr11 20946493 20947133 -127836339 + L2 LINE L2 2606 3313 0 2108 138 0 3 chr11 20947771 20948083 -127835389 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 20949117 20949142 -127834330 + AT_rich Low_complexity Low_complexity 1 25 0 2068 116 0 3 chr11 20949417 20949728 -127833744 - AluY SINE Alu 0 310 1 240 325 9 44 chr11 20950022 20950136 -127833336 - MER5A DNA MER1_type -35 154 45 1394 236 20 61 chr11 20950269 20950709 -127832763 + MER63B DNA MER1_type 7 428 -8 1958 148 30 0 chr11 20951025 20951328 -127832144 - AluJo SINE Alu 0 312 1 1028 241 27 31 chr11 20951381 20951638 -127831834 + MIR SINE MIR 7 262 0 300 326 20 0 chr11 20952263 20952361 -127831111 + L1ME LINE L1 5322 5421 -2387 2175 126 0 40 chr11 20952397 20952723 -127830749 + AluSq SINE Alu 1 313 0 317 345 198 0 chr11 20952792 20952969 -127830503 + L1ME LINE L1 5490 5701 -420 555 103 0 0 chr11 20953020 20953121 -127830351 - Alu SINE Alu 0 306 206 620 111 0 0 chr11 20953124 20953214 -127830258 + AluJ/FRAM SINE Alu 218 307 -5 302 179 18 0 chr11 20953259 20953315 -127830157 - L2 LINE L2 0 3272 3216 1493 117 5 5 chr11 20953346 20953552 -127829920 - AluSx SINE Alu -105 207 2 422 277 68 68 chr11 20953607 20953827 -127829645 + MLT1H LTR MaLR 101 320 -229 309 26 0 0 chr11 20953860 20953898 -127829574 + (CA)n Simple_repeat Simple_repeat 2 39 0 344 135 14 0 chr11 20953898 20953972 -127829500 + (TA)n Simple_repeat Simple_repeat 2 76 0 271 242 0 0 chr11 20953978 20954040 -127829432 + MLT1H LTR MaLR 506 567 0 381 304 83 4 chr11 20954348 20954658 -127828814 + LTR33A LTR ERVL 147 506 -17 2048 147 34 9 chr11 20954671 20954997 -127828475 - MER1B DNA MER1_type 0 339 6 21 57 0 0 chr11 20956109 20956144 -127827328 + AT_rich Low_complexity Low_complexity 1 35 0 948 177 50 5 chr11 20956160 20956358 -127827114 - L1MA9 LINE L1 -38 7295 7089 853 138 53 13 chr11 20956845 20956997 -127826475 + MIR SINE MIR 90 247 -15 10414 159 54 32 chr11 20957973 20958611 -127824861 - L1MA9 LINE L1 -505 6816 6194 5669 104 21 24 chr11 20958611 20959168 -127824304 - L1PA14 LINE L1 -12 6149 5592 1969 161 3 0 chr11 20959168 20959473 -127823999 - AluSx SINE Alu -6 306 1 5669 104 21 24 chr11 20959473 20960581 -127822891 - L1PA14 LINE L1 -569 5592 4507 10414 159 54 32 chr11 20960581 20960788 -127822684 - L1MA9 LINE L1 -1127 6194 5993 1500 177 0 0 chr11 20960788 20961031 -127822441 - AluJb SINE Alu -45 267 25 10414 159 54 32 chr11 20961031 20961093 -127822379 - L1MA9 LINE L1 -1328 5993 5934 180 0 0 0 chr11 20961093 20961113 -127822359 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 10414 159 54 32 chr11 20961113 20962929 -127820543 - L1MA9 LINE L1 -1387 5934 4038 8851 169 89 50 chr11 20962916 20963141 -127820331 - L1MA9 LINE L1 -5194 1974 1759 * 2533 57 0 0 chr11 20963141 20963442 -127820030 - AluY SINE Alu -10 301 1 8851 169 89 50 chr11 20963442 20965116 -127818356 - L1MA9 LINE L1 -5409 1759 1 325 282 106 28 chr11 20965201 20965735 -127817737 + L1M4 LINE L1 4496 5095 -1051 823 174 7 14 chr11 20965771 20965915 -127817557 + FRAM SINE Alu 9 151 -25 1102 53 0 8 chr11 20965917 20966050 -127817422 + AluY SINE Alu 1 132 -179 229 214 12 12 chr11 20966058 20966142 -127817330 + L1M4 LINE L1 5118 5201 -945 23 92 0 0 chr11 20966226 20966291 -127817181 + AT_rich Low_complexity Low_complexity 1 65 0 184 270 0 0 chr11 20966292 20966329 -127817143 - L2 LINE L2 -15 3257 3221 746 222 18 0 chr11 20966356 20966523 -127816949 - L1M4 LINE L1 -887 5259 5090 319 268 188 0 chr11 20966680 20966792 -127816680 - L1MC4a LINE L1 -990 6818 6686 2398 49 0 7 chr11 20966818 20967153 -127816319 - AluY SINE Alu 0 333 1 2243 112 0 0 chr11 20967335 20967639 -127815833 - AluSq SINE Alu -9 304 1 427 254 16 8 chr11 20968064 20968186 -127815286 - L1MC4a LINE L1 -1881 5927 5805 303 221 189 0 chr11 20968332 20968454 -127815018 - L1MC4a LINE L1 -2054 5754 5610 489 162 0 0 chr11 20968461 20968535 -127814937 + AluJ/FLAM SINE Alu 1 74 -238 414 223 46 54 chr11 20968572 20968702 -127814770 - L1MC4a LINE L1 -2215 5593 5465 365 141 141 0 chr11 20969839 20969910 -127813562 - L2 LINE L2 0 3313 3233 232 159 0 23 chr11 20969924 20969968 -127813504 - L1MC/D LINE L1 -1890 5918 5876 1950 253 134 4 chr11 20969972 20970703 -127812769 - L1MC4a LINE L1 -3138 3008 2183 618 233 67 137 chr11 20971075 20971672 -127811800 - L1ME3A LINE L1 -7 6163 5609 463 270 53 7 chr11 20972144 20972296 -127811176 + L1ME LINE L1 5524 5682 -439 718 181 42 122 chr11 20972779 20973017 -127810455 + MER20 DNA MER1_type 1 219 0 834 289 52 7 chr11 20975347 20975634 -127807838 - L2 LINE L2 0 3313 3014 22 0 0 0 chr11 20975742 20975764 -127807708 + AT_rich Low_complexity Low_complexity 1 22 0 474 288 25 6 chr11 20976860 20977020 -127806452 + MER103 DNA DNA 1 163 -3 1082 167 27 41 chr11 20977108 20977329 -127806143 - MER20 DNA MER1_type -1 218 1 1837 111 60 57 chr11 20978744 20979042 -127804430 + AluSx SINE Alu 1 299 -13 1044 184 39 26 chr11 20979295 20979528 -127803944 - MER46A DNA MER2_type 0 236 1 208 348 11 0 chr11 20979562 20979651 -127803821 - MIR SINE MIR -12 250 161 219 298 70 0 chr11 20980586 20980643 -127802829 - MIR SINE MIR -5 257 197 228 372 18 9 chr11 20980672 20980898 -127802574 + HAL1b LINE L1 684 911 -437 391 277 10 0 chr11 20980993 20981094 -127802378 + L1ME1 LINE L1 6055 6156 -10 309 354 165 15 chr11 20981217 20981672 -127801800 + L1M4 LINE L1 4711 5233 -913 325 233 83 25 chr11 20981722 20981842 -127801630 + L1M LINE L1 5292 5418 -2390 1355 208 116 61 chr11 20981845 20982416 -127801056 - L1M4 LINE L1 -1052 5094 4493 1458 140 8 8 chr11 20982420 20982656 -127800816 - AluSg SINE Alu -11 299 64 321 240 150 142 chr11 20982899 20983145 -127800327 + MIR SINE MIR 9 256 -6 972 230 9 31 chr11 20984517 20984743 -127798729 - MER58A DNA MER1_type 0 224 4 279 254 28 28 chr11 20984842 20984913 -127798559 - MER91C DNA MER1_type -28 112 42 772 206 83 17 chr11 20984980 20985160 -127798312 + MER58A DNA MER1_type 33 224 0 762 328 119 49 chr11 20986006 20987068 -127796404 + L2 LINE L2 2096 3270 -2 1872 78 4 8 chr11 20988434 20988677 -127794795 - AluSc SINE Alu -36 273 32 189 94 0 0 chr11 20989925 20989957 -127793515 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 220 270 81 101 chr11 20990536 20990684 -127792788 + MIR SINE MIR 6 150 -112 30 69 0 0 chr11 20990759 20990817 -127792655 + AT_rich Low_complexity Low_complexity 1 58 0 26 0 0 0 chr11 20990900 20990926 -127792546 + AT_rich Low_complexity Low_complexity 1 26 0 306 333 33 0 chr11 20991691 20991811 -127791661 - LTR67 LTR ERVL -2 555 432 258 284 63 0 chr11 20992025 20992120 -127791352 - LTR67 LTR ERVL -357 200 100 441 282 65 0 chr11 20992799 20992923 -127790549 - MIR SINE MIR -7 255 124 1833 149 11 7 chr11 20993905 20994210 -127789262 - AluSx SINE Alu 0 306 1 918 163 153 24 chr11 20995086 20995295 -127788177 - MER46A DNA MER2_type 0 236 1 1525 173 53 0 chr11 20995518 20995784 -127787688 - Tigger3(Golem) DNA MER2_type 0 3038 69 13525 142 44 31 chr11 20995784 20999169 -127784303 - L1PA11 LINE L1 -3 7609 4173 2068 217 99 50 chr11 20999169 21000254 -127783218 - L1PA11 LINE L1 -4873 2711 188 3794 123 41 12 chr11 21000254 21000841 -127782631 - LTR10E LTR ERV1 -29 604 1 898 244 0 0 chr11 21000841 21001034 -127782438 - L1PA11 LINE L1 -7386 195 3 486 125 56 0 chr11 21001036 21001108 -127782364 - Tigger3(Golem) DNA MER2_type -2952 77 2 1939 108 0 70 chr11 21001200 21001514 -127781958 - AluSx SINE Alu -12 300 9 1216 122 11 21 chr11 21001648 21001837 -127781635 + AluSq SINE Alu 107 293 -20 518 285 165 13 chr11 21002100 21002409 -127781063 - L1ME LINE L1 -5094 976 621 504 180 199 73 chr11 21002560 21002766 -127780706 - MER110A LTR ERV1 -4 464 233 1802 132 73 0 chr11 21002770 21003042 -127780430 + AluSx SINE Alu 1 292 -20 602 127 27 36 chr11 21003917 21004027 -127779445 + FRAM SINE Alu 55 163 -13 204 292 73 52 chr11 21004734 21004830 -127778642 - L2 LINE L2 -1 3271 3174 303 201 34 87 chr11 21004918 21005067 -127778405 + L1MC5 LINE L1 7629 7769 -192 672 242 165 16 chr11 21005256 21005504 -127777968 + L1ME3A LINE L1 5591 5875 -295 412 195 171 0 chr11 21005521 21005603 -127777869 + AluJ/FLAM SINE Alu 1 96 -216 641 275 17 11 chr11 21005609 21005787 -127777685 + L1ME3A LINE L1 5968 6146 -24 521 344 123 40 chr11 21006019 21006449 -127777023 - L2 LINE L2 -575 2739 2274 279 401 88 6 chr11 21009085 21009267 -127774205 - L2 LINE L2 -5 3267 3071 252 336 91 60 chr11 21009634 21009899 -127773573 - L2 LINE L2 -42 3230 2958 1826 115 71 22 chr11 21009899 21010221 -127773251 + THE1B LTR MaLR 1 338 -26 259 290 90 0 chr11 21010654 21010754 -127772718 + L1MEd LINE L1 607 715 -5490 264 250 24 68 chr11 21011086 21011320 -127772152 + L1MEd LINE L1 1074 1345 -4910 2045 144 153 9 chr11 21011369 21011826 -127771646 + L1MB8 LINE L1 5639 6161 -17 322 257 40 0 chr11 21011971 21012072 -127771400 - L1ME3A LINE L1 -64 6106 6002 264 267 36 93 chr11 21012198 21012274 -127771198 + L1MEd LINE L1 1570 1649 -4747 2112 147 0 0 chr11 21012274 21012580 -127770892 + AluSx SINE Alu 1 306 -6 264 267 36 93 chr11 21012580 21012750 -127770722 + L1MEd LINE L1 1649 1802 -4594 822 203 155 19 chr11 21012857 21013167 -127770305 + L1ME3A LINE L1 5799 6150 -20 663 190 0 16 chr11 21015302 21015423 -127768049 + FLAM_A SINE Alu 11 129 -13 320 125 0 0 chr11 21015991 21016039 -127767433 + Alu SINE Alu 1 48 -254 256 208 101 43 chr11 21016326 21016466 -127767006 - L1ME LINE L1 -4516 1564 1395 1061 240 144 21 chr11 21016469 21017135 -127766337 - L1ME LINE L1 -4983 1097 386 300 325 35 18 chr11 21017225 21017394 -127766078 - L1ME LINE L1 -5578 492 321 193 352 110 0 chr11 21017510 21017601 -127765871 - L2 LINE L2 -5 3308 3208 376 247 0 32 chr11 21017670 21017763 -127765709 - L2 LINE L2 -3 3269 3180 1328 126 0 0 chr11 21018276 21018451 -127765021 + AluSg SINE Alu 1 175 -135 1312 101 101 0 chr11 21018455 21018644 -127764828 + AluSg/x SINE Alu 88 295 -17 265 303 61 42 chr11 21018866 21019031 -127764441 - MLT1H LTR MaLR 0 549 382 1897 115 50 4 chr11 21019846 21020125 -127763347 - AluSx SINE Alu -20 292 1 411 137 27 14 chr11 21020447 21020520 -127762952 + AluJ/FLAM SINE Alu 1 74 -238 1668 91 59 0 chr11 21020527 21020746 -127762726 - AluSq SINE Alu -12 301 70 1010 185 44 36 chr11 21020848 21021097 -127762375 + AluJo SINE Alu 42 292 -20 503 170 100 75 chr11 21021110 21021310 -127762162 + L1MEc LINE L1 2166 2370 -4026 1871 227 71 24 chr11 21021573 21022247 -127761225 + L1M4 LINE L1 4342 5047 -1099 201 391 94 5 chr11 21022407 21022599 -127760873 + L2 LINE L2 2812 3020 -252 2307 211 102 30 chr11 21024829 21025620 -127757852 - L1ME1 LINE L1 -16 6150 5303 1807 238 115 18 chr11 21025653 21026143 -127757329 - L1ME1 LINE L1 -1192 4954 4513 234 0 0 0 chr11 21026143 21026169 -127757303 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 534 16 0 0 chr11 21026168 21026231 -127757241 + (GA)n Simple_repeat Simple_repeat 1 63 0 1807 238 115 18 chr11 21026169 21026232 -127757240 - L1ME1 LINE L1 -1633 4513 4458 1820 158 4 0 chr11 21026232 21026511 -127756961 - AluSx SINE Alu -32 280 1 1807 238 115 18 chr11 21026511 21026782 -127756690 - L1ME1 LINE L1 -1688 4458 4117 788 262 74 9 chr11 21027457 21027686 -127755786 + MIR SINE MIR 8 251 -11 263 313 104 0 chr11 21028729 21028863 -127754609 + L2 LINE L2 3146 3293 -20 2037 112 10 17 chr11 21028971 21029265 -127754207 + AluSx SINE Alu 1 292 -20 2014 99 4 0 chr11 21029302 21029564 -127753908 + AluSx SINE Alu 1 263 -49 609 105 0 0 chr11 21029565 21029651 -127753821 + AluSg/x SINE Alu 218 303 -6 39 88 0 0 chr11 21030724 21030826 -127752646 + AT_rich Low_complexity Low_complexity 1 102 0 1576 185 36 21 chr11 21030831 21031112 -127752360 + AluJo SINE Alu 5 289 -23 1516 171 70 0 chr11 21031138 21031395 -127752077 + AluJo SINE Alu 1 275 -37 405 252 50 16 chr11 21031616 21031792 -127751680 + MIR SINE MIR 8 238 -24 306 281 9 44 chr11 21032369 21032483 -127750989 + HAL1b LINE L1 1232 1341 -7 498 275 127 51 chr11 21032659 21032765 -127750707 - MIR SINE MIR 0 262 166 2165 120 0 0 chr11 21032765 21033069 -127750403 - AluSx SINE Alu 0 304 1 498 275 127 51 chr11 21033069 21033197 -127750275 - MIR SINE MIR -96 166 9 189 305 96 51 chr11 21033314 21033491 -127749981 + MIR SINE MIR 2 186 -76 1552 210 35 3 chr11 21033745 21034031 -127749441 + AluJb SINE Alu 1 295 -17 257 232 18 0 chr11 21034076 21034132 -127749340 - L2 LINE L2 0 3313 3257 893 195 17 0 chr11 21034402 21034576 -127748896 - MER5A DNA MER1_type 0 189 13 372 303 81 78 chr11 21035195 21035654 -127747818 - L1ME4a LINE L1 -96 6025 5566 311 330 25 20 chr11 21035672 21035875 -127747597 - L1ME4a LINE L1 -2290 5518 5315 478 92 0 6 chr11 21035993 21036254 -127747218 + AluSx SINE Alu 1 312 0 288 293 13 115 chr11 21036394 21036551 -127746921 - MIR3 SINE MIR -35 173 33 399 296 128 11 chr11 21036743 21036922 -127746550 + MIR SINE MIR 63 262 0 2160 148 0 0 chr11 21037385 21037696 -127745776 - AluSx SINE Alu -1 311 1 2279 117 43 6 chr11 21038223 21038574 -127744898 - THE1B LTR MaLR 0 364 1 226 333 39 39 chr11 21038943 21039045 -127744427 + L2 LINE L2 2983 3084 -188 221 330 91 0 chr11 21039131 21039219 -127744253 + L2 LINE L2 3177 3272 0 407 295 90 0 chr11 21039344 21039466 -127744006 + L2 LINE L2 3181 3313 0 976 264 133 18 chr11 21039940 21040391 -127743081 - MLT1J LTR MaLR -8 503 1 564 197 7 61 chr11 21040501 21040648 -127742824 + MIR SINE MIR 120 258 -4 307 281 111 42 chr11 21040648 21040954 -127742518 - L1MC4a LINE L1 -1906 5902 5576 248 300 0 67 chr11 21040989 21041079 -127742393 - L2 LINE L2 -3 3269 3186 684 271 108 0 chr11 21041324 21041527 -127741945 + MIR SINE MIR 15 239 -23 4788 74 11 11 chr11 21041582 21041783 -127741689 - L1PA10 LINE L1 0 6168 5968 5961 86 193 34 chr11 21041783 21042875 -127740597 + MER11A LTR ERVK 1 1266 0 4788 74 11 11 chr11 21042875 21043324 -127740148 - L1PA10 LINE L1 -199 5969 5518 203 315 42 21 chr11 21043704 21043847 -127739625 - L2 LINE L2 -351 2963 2818 524 337 31 10 chr11 21044087 21044283 -127739189 - MIR SINE MIR -3 259 60 583 295 12 18 chr11 21045269 21045451 -127738021 + MIR SINE MIR 35 215 -47 198 0 0 0 chr11 21045478 21045500 -127737972 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 229 319 29 0 chr11 21045667 21045736 -127737736 + MIR SINE MIR 66 136 -126 1046 188 25 46 chr11 21045752 21046023 -127737449 + L1MB8 LINE L1 5018 5293 -885 2268 96 0 0 chr11 21046023 21046346 -127737126 + AluSx SINE Alu 1 323 0 1046 188 25 46 chr11 21046346 21046450 -127737022 + L1MB8 LINE L1 5293 5398 -780 1929 129 18 7 chr11 21046450 21046729 -127736743 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr11 21046734 21046755 -127736717 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1046 188 25 46 chr11 21046755 21047438 -127736034 + L1MB8 LINE L1 5402 6143 -35 392 200 267 33 chr11 21047672 21047882 -127735590 - MIR SINE MIR -2 260 2 369 300 17 41 chr11 21049130 21049367 -127734105 + CT-rich Low_complexity Low_complexity 1 231 0 196 272 29 19 chr11 21050476 21050579 -127732893 + MIR3 SINE MIR 101 204 -4 803 221 43 24 chr11 21050870 21051123 -127732349 - MER20B DNA MER1_type -23 760 503 234 284 19 37 chr11 21051371 21051533 -127731939 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 1891 219 24 50 chr11 21051787 21052368 -127731104 + L1ME1 LINE L1 5615 6183 -1 1205 272 14 22 chr11 21052377 21052734 -127730738 - MER20B DNA MER1_type -429 354 1 346 291 51 0 chr11 21052748 21052865 -127730607 - MIR3 SINE MIR -72 136 14 184 194 0 0 chr11 21053457 21053493 -127729979 + L2 LINE L2 3231 3266 -6 566 251 120 6 chr11 21053769 21053936 -127729536 + MIR SINE MIR 8 193 -69 1514 207 7 27 chr11 21054196 21054491 -127728981 + AluJb SINE Alu 1 289 -23 677 132 16 36 chr11 21054904 21055153 -127728319 + CT-rich Low_complexity Low_complexity 1 244 0 1609 194 3 0 chr11 21055153 21055436 -127728036 - AluJo SINE Alu -28 284 1 335 333 17 0 chr11 21055454 21055571 -127727901 - L2 LINE L2 -4 3268 3150 324 70 0 0 chr11 21055822 21055865 -127727607 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2178 109 67 17 chr11 21056149 21056506 -127726966 - THE1C LTR MaLR 0 375 1 10566 110 48 3 chr11 21056506 21058018 -127725454 - THE1C-int LTR MaLR 0 1580 1 2785 83 16 8 chr11 21058018 21058390 -127725082 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr11 21058627 21058651 -127724821 + AT_rich Low_complexity Low_complexity 1 24 0 413 298 57 98 chr11 21058810 21058936 -127724536 + MIR SINE MIR 28 141 -121 2015 133 13 0 chr11 21058936 21059238 -127724234 + AluJb SINE Alu 1 306 -6 413 298 57 98 chr11 21059238 21059356 -127724116 + MIR SINE MIR 141 262 0 2093 122 3 10 chr11 21059551 21059863 -127723609 - AluSx SINE Alu -2 310 1 493 295 68 0 chr11 21060844 21060990 -127722482 + MIR SINE MIR 38 192 -60 260 225 163 0 chr11 21061084 21061164 -127722308 + HAL1 LINE L1 4 96 -2411 926 28 0 0 chr11 21061172 21061279 -127722193 + L1PA8 LINE L1 6063 6169 -3 902 247 127 32 chr11 21061382 21061698 -127721774 - MLT1H LTR MaLR -1 548 203 918 316 55 8 chr11 21061921 21062288 -127721184 + HAL1 LINE L1 163 546 -1961 1402 195 150 77 chr11 21062295 21062854 -127720618 + HAL1 LINE L1 1169 1768 -739 1303 188 171 22 chr11 21062854 21063216 -127720256 + LTR50 LTR ERVL 1 416 -379 310 321 48 12 chr11 21063276 21063360 -127720112 + HAL1 LINE L1 1763 1849 -658 1694 249 95 37 chr11 21063360 21063877 -127719595 + MLT1H LTR MaLR 3 549 0 1093 254 117 41 chr11 21063877 21064392 -127719080 + HAL1 LINE L1 1845 2398 -109 370 179 0 0 chr11 21064436 21064523 -127718949 - AluJ/FRAM SINE Alu 0 314 228 1499 148 115 0 chr11 21064617 21064895 -127718577 + AluJb SINE Alu 1 310 -2 577 330 77 42 chr11 21065062 21065569 -127717903 + L2 LINE L2 2487 3011 -261 404 267 27 13 chr11 21065858 21066001 -127717471 + MLT1L LTR MaLR 369 615 0 862 259 45 0 chr11 21066114 21066361 -127717111 + MIR SINE MIR 5 262 0 299 309 111 32 chr11 21066396 21066522 -127716950 + L2 LINE L2 3177 3312 -1 183 205 0 0 chr11 21067011 21067050 -127716422 + CT-rich Low_complexity Low_complexity 2 40 0 387 183 0 56 chr11 21067636 21067707 -127715765 + AluJb SINE Alu 1 67 -235 1807 122 8 8 chr11 21067708 21067971 -127715501 + MLT2A2 LTR ERVL 50 312 -141 1356 184 0 8 chr11 21068091 21068341 -127715131 + AluJb SINE Alu 65 312 0 614 271 98 21 chr11 21068434 21068670 -127714802 - MIR SINE MIR 0 262 9 246 250 0 19 chr11 21069002 21069054 -127714418 - MIR3 SINE MIR -21 187 137 432 228 0 0 chr11 21069126 21069218 -127714254 - MLT1I LTR MaLR 0 409 318 514 46 0 0 chr11 21069223 21069288 -127714184 - MLT2A2 LTR ERVL 0 453 389 2035 126 84 62 chr11 21069288 21069726 -127713746 + LTR7 LTR ERV1 1 448 -2 16959 99 14 21 chr11 21069729 21072622 -127710850 + HERVH LTR ERV1 2 2995 -4718 992 120 7 0 chr11 21072601 21072751 -127710721 + HERVH LTR ERV1 3140 3290 -4423 * 3079 104 0 7 chr11 21072741 21073181 -127710291 + HERVH LTR ERV1 3492 3928 -3785 422 143 63 0 chr11 21073187 21073250 -127710222 + HERVH LTR ERV1 5753 5819 -1894 2463 95 45 13 chr11 21073250 21073628 -127709844 + HERVH LTR ERV1 7324 7713 0 2052 132 75 55 chr11 21073628 21074067 -127709405 + LTR7 LTR ERV1 1 448 -2 739 178 42 2 chr11 21074069 21074230 -127709242 - MLT2A2 LTR ERVL -54 500 293 2121 111 6 19 chr11 21074325 21074640 -127708832 - MLT2A2 LTR ERVL -142 311 1 619 330 22 9 chr11 21074645 21074872 -127708600 - MLT1I LTR MaLR -95 314 85 258 263 129 14 chr11 21074980 21075132 -127708340 - L1ME4a LINE L1 -2 6119 5935 2011 120 3 7 chr11 21075132 21075440 -127708032 - AluSx SINE Alu -3 309 3 258 263 129 14 chr11 21075440 21075496 -127707976 - L1ME4a LINE L1 -186 5935 5887 2109 64 7 11 chr11 21075677 21075957 -127707515 + AluY SINE Alu 1 279 -32 332 198 0 10 chr11 21076357 21076458 -127707014 + GA-rich Low_complexity Low_complexity 2 101 0 22862 42 8 9 chr11 21076773 21080336 -127703136 + L1PA5 LINE L1 2574 6151 -3 3122 167 2 33 chr11 21080987 21081318 -127702154 - MLT2B1 LTR ERVL 0 520 208 2025 113 3 0 chr11 21081318 21081641 -127701831 - AluSp SINE Alu 0 324 1 3122 167 2 33 chr11 21081641 21081822 -127701650 - MLT2B1 LTR ERVL -312 208 23 597 188 0 10 chr11 21081822 21081918 -127701554 + AluJo SINE Alu 125 219 -93 476 292 30 24 chr11 21083137 21083305 -127700167 + MLT1K LTR MaLR 1 169 -419 1420 209 82 47 chr11 21083826 21083910 -127699562 + MLT1D LTR MaLR 113 193 -312 1853 135 60 0 chr11 21083910 21084191 -127699281 + AluSg SINE Alu 1 298 -12 1420 209 82 47 chr11 21084191 21084470 -127699002 + MLT1D LTR MaLR 193 489 -16 246 253 103 0 chr11 21084515 21084602 -127698870 + MIR SINE MIR 167 262 0 1887 164 19 82 chr11 21084792 21085208 -127698264 - MLT1B LTR MaLR 0 390 1 202 260 87 58 chr11 21085465 21085569 -127697903 + MIR SINE MIR 35 141 -121 873 284 185 9 chr11 21085975 21086401 -127697071 - MLT1J LTR MaLR -2 509 9 2281 94 0 3 chr11 21086471 21086780 -127696692 - AluY SINE Alu -3 308 1 358 263 17 59 chr11 21086970 21087088 -127696384 - MIR SINE MIR -65 197 85 1881 140 0 0 chr11 21087556 21087835 -127695637 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21087835 21087866 -127695606 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2247 92 3 0 chr11 21088023 21088317 -127695155 + AluSp SINE Alu 1 295 -18 208 265 0 186 chr11 21088360 21088575 -127694897 - MIR SINE MIR -14 248 74 207 0 0 0 chr11 21088617 21088640 -127694832 + (T)n Simple_repeat Simple_repeat 1 23 0 2419 137 19 82 chr11 21088802 21088897 -127694575 - Tigger2 DNA MER2_type 0 2718 2619 1702 163 33 0 chr11 21088897 21089197 -127694275 - AluJb SINE Alu -2 310 1 2419 137 19 82 chr11 21089197 21089577 -127693895 - Tigger2 DNA MER2_type -99 2619 2273 2373 79 0 0 chr11 21089588 21089893 -127693579 - AluSg1 SINE Alu -4 305 1 430 173 136 0 chr11 21089893 21089974 -127693498 + MER8 DNA MER2_type 148 239 0 779 301 101 30 chr11 21090545 21090911 -127692561 + LTR16C LTR ERVL 68 459 -32 375 139 124 93 chr11 21091090 21091219 -127692253 + MLT1K LTR MaLR 448 580 -8 302 310 35 56 chr11 21092082 21092224 -127691248 + L1ME4a LINE L1 5579 5717 -404 887 183 0 33 chr11 21092227 21092407 -127691065 + FRAM SINE Alu 1 166 -10 457 268 128 26 chr11 21092407 21092758 -127690714 + L1ME4a LINE L1 5730 6116 -5 532 258 108 11 chr11 21092954 21093140 -127690332 + MER3 DNA MER1_type 1 204 -5 257 317 118 21 chr11 21093171 21093357 -127690115 - L2 LINE L2 -172 3100 2897 2441 53 0 0 chr11 21093450 21093751 -127689721 + AluY SINE Alu 1 301 -10 230 294 83 89 chr11 21093955 21094135 -127689337 - MIR SINE MIR -34 228 50 23 54 0 0 chr11 21095504 21095541 -127687931 + AT_rich Low_complexity Low_complexity 1 37 0 252 122 0 0 chr11 21095704 21095745 -127687727 + (CA)n Simple_repeat Simple_repeat 2 42 0 319 228 134 31 chr11 21095792 21095919 -127687553 - L1ME4a LINE L1 -187 5934 5795 307 233 103 0 chr11 21095970 21096085 -127687387 - L1ME4a LINE L1 -459 5662 5593 230 326 42 56 chr11 21096120 21096264 -127687208 + MIR3 SINE MIR 67 208 0 347 235 208 95 chr11 21096847 21096961 -127686511 - MIR SINE MIR 0 262 162 2135 93 10 0 chr11 21096961 21097252 -127686220 - AluY SINE Alu -17 294 1 347 235 208 95 chr11 21097252 21097358 -127686114 - MIR SINE MIR -100 162 17 210 71 0 0 chr11 21098199 21098227 -127685245 + (TTC)n Simple_repeat Simple_repeat 2 29 0 219 338 113 0 chr11 21099342 21099475 -127683997 + MIR SINE MIR 109 256 -6 777 22 0 0 chr11 21101737 21101828 -127681644 + (GAA)n Simple_repeat Simple_repeat 2 92 0 646 260 35 0 chr11 21103584 21103753 -127679719 + MER69A DNA AcHobo 3 177 0 262 258 8 61 chr11 21103865 21103997 -127679475 + CT-rich Low_complexity Low_complexity 2 126 0 204 97 0 0 chr11 21104107 21104138 -127679334 + (CA)n Simple_repeat Simple_repeat 1 31 0 601 287 25 6 chr11 21104822 21104979 -127678493 - MIR3 SINE MIR -3 205 46 231 248 177 35 chr11 21107743 21107856 -127675616 - L2 LINE L2 -182 3090 2962 271 233 41 41 chr11 21109111 21109184 -127674288 - L2 LINE L2 0 3313 3241 250 275 75 17 chr11 21109260 21109380 -127674092 - MER5A DNA MER1_type -9 180 54 * 253 256 93 23 chr11 21109295 21109381 -127674091 + MER5A DNA MER1_type 56 147 -42 193 302 364 0 chr11 21109400 21109529 -127673943 + MER5A DNA MER1_type 8 183 -6 313 276 58 52 chr11 21109771 21109960 -127673512 + MIR SINE MIR 6 193 -67 408 67 0 0 chr11 21110314 21110374 -127673098 + (TC)n Simple_repeat Simple_repeat 1 60 0 297 0 0 0 chr11 21110374 21110407 -127673065 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr11 21110686 21110712 -127672760 + AT_rich Low_complexity Low_complexity 1 26 0 929 139 85 18 chr11 21112170 21112335 -127671137 + MER20 DNA MER1_type 2 177 -42 2678 111 93 47 chr11 21112336 21112596 -127670876 + LTR26B LTR ERV1 1 292 -239 1818 156 7 0 chr11 21112596 21112897 -127670575 + AluSx SINE Alu 9 311 -1 2678 111 93 47 chr11 21112897 21113086 -127670386 + LTR26B LTR ERV1 292 471 -60 451 195 0 35 chr11 21113360 21113447 -127670025 + LTR26B LTR ERV1 447 530 -1 296 253 11 53 chr11 21113682 21113777 -127669695 - MIR SINE MIR -4 258 168 1665 179 0 7 chr11 21113938 21114235 -127669237 - AluJo SINE Alu -17 295 1 296 186 9 177 chr11 21114378 21114491 -127668981 + MER102b DNA MER1_type 248 341 0 837 221 11 11 chr11 21114560 21114741 -127668731 + MIR SINE MIR 82 262 0 405 198 86 0 chr11 21114869 21114985 -127668487 + MIR SINE MIR 118 243 -19 1071 158 0 6 chr11 21115065 21115242 -127668230 - FRAM SINE Alu -3 173 1 1043 173 11 22 chr11 21115243 21115428 -127668044 - MER20 DNA MER1_type -34 185 3 747 264 68 10 chr11 21115658 21115872 -127667600 + MIR SINE MIR 37 260 -2 2215 100 3 0 chr11 21116772 21117082 -127666390 - AluY SINE Alu 0 311 1 734 222 78 99 chr11 21117166 21117500 -127665972 - MER102a DNA MER1_type 0 330 4 180 200 0 0 chr11 21119113 21119158 -127664314 + CT-rich Low_complexity Low_complexity 2 46 0 233 280 243 9 chr11 21119360 21119467 -127664005 + MIR3 SINE MIR 15 146 -62 * 391 216 62 21 chr11 21119436 21119533 -127663939 + MIR SINE MIR 113 213 -49 1785 137 0 14 chr11 21120070 21120354 -127663118 + AluSx SINE Alu 1 280 -32 315 0 0 0 chr11 21120361 21120396 -127663076 + (CA)n Simple_repeat Simple_repeat 2 36 0 361 190 89 13 chr11 21121097 21121176 -127662296 + MIR3 SINE MIR 119 203 -5 304 221 53 71 chr11 21121182 21121295 -127662177 + MIR3 SINE MIR 77 187 -21 718 242 105 5 chr11 21121694 21121884 -127661588 + MIR SINE MIR 29 237 -25 528 288 204 5 chr11 21122006 21122197 -127661275 - MIR SINE MIR -14 248 20 2005 129 0 19 chr11 21122200 21122518 -127660954 - AluSx SINE Alu 0 312 1 375 279 88 15 chr11 21122641 21122777 -127660695 + MIR3 SINE MIR 38 183 -25 211 254 55 55 chr11 21123163 21123273 -127660199 - L3b LINE CR1 -230 1353 1244 762 130 91 45 chr11 21123727 21123881 -127659591 + MER96 DNA MER1_type? 15 175 0 227 299 85 43 chr11 21123908 21124072 -127659400 + MIR SINE MIR 1 171 -91 1254 258 142 18 chr11 21124708 21125507 -127657965 + L2 LINE L2 2396 3300 -13 194 0 39 0 chr11 21125554 21125580 -127657892 + (TA)n Simple_repeat Simple_repeat 2 28 0 1982 118 7 0 chr11 21125580 21125867 -127657605 - AluSx SINE Alu -23 289 1 451 198 45 152 chr11 21126292 21126535 -127656937 - MIR SINE MIR -33 229 13 2191 112 0 0 chr11 21126674 21126977 -127656495 - AluSq SINE Alu -10 303 1 335 155 0 17 chr11 21127388 21127446 -127656026 + L2 LINE L2 3254 3310 -3 702 287 30 26 chr11 21127447 21127677 -127655795 - MIR SINE MIR -12 250 20 1245 110 4 114 chr11 21129825 21130070 -127653402 - MLT1B LTR MaLR -170 220 3 342 326 141 7 chr11 21130199 21130334 -127653138 + MIR3 SINE MIR 9 161 -47 380 306 141 0 chr11 21130337 21130507 -127652965 - MIR SINE MIR -12 250 57 291 149 21 0 chr11 21130840 21130887 -127652585 - MLT1A1 LTR MaLR 0 374 327 1439 129 4 0 chr11 21130918 21131143 -127652329 - L1MA5 LINE L1 -2 6298 6073 1805 99 62 34 chr11 21131146 21131438 -127652034 - AluSq SINE Alu -13 300 1 496 118 25 0 chr11 21131441 21131533 -127651939 - L1MA5A LINE L1 -189 6108 6021 1522 183 49 23 chr11 21131536 21131842 -127651630 - MLT1A1 LTR MaLR -51 314 1 775 257 54 54 chr11 21135082 21135285 -127648187 - MIR SINE MIR 0 262 57 2063 99 0 10 chr11 21135285 21135588 -127647884 - AluSg SINE Alu -10 300 1 775 257 54 54 chr11 21135588 21135645 -127647827 - MIR SINE MIR -204 58 2 725 316 32 16 chr11 21136554 21136801 -127646671 - MIR SINE MIR 0 262 12 790 100 93 27 chr11 21136940 21137090 -127646382 + L1PA10 LINE L1 6008 6167 -1 1059 168 0 56 chr11 21137132 21137364 -127646108 - MER20 DNA MER1_type 0 219 1 1041 187 0 0 chr11 21138988 21139159 -127644313 + FAM SINE Alu 5 175 0 324 215 66 116 chr11 21139324 21139445 -127644027 + MIR3 SINE MIR 81 168 -40 24 0 0 0 chr11 21143377 21143401 -127640071 + AT_rich Low_complexity Low_complexity 1 24 0 465 317 7 0 chr11 21143489 21143631 -127639841 - MER45A DNA AcHobo 0 178 36 407 324 54 9 chr11 21144922 21145086 -127638386 - MIR3 SINE MIR -27 181 3 2953 146 45 9 chr11 21145484 21146127 -127637345 - L1MA7 LINE L1 -11 6280 5509 403 165 141 12 chr11 21146126 21146211 -127637261 - L1ME3A LINE L1 -38 6132 6037 * 2127 121 0 3 chr11 21146217 21146531 -127636941 - AluSq SINE Alu 0 313 1 2127 100 10 0 chr11 21147054 21147353 -127636119 - AluY SINE Alu -9 302 1 403 321 0 0 chr11 21148485 21148591 -127634881 - MIR SINE MIR -63 145 40 252 77 0 0 chr11 21148630 21148669 -127634803 + (TA)n Simple_repeat Simple_repeat 2 40 0 456 211 28 28 chr11 21148734 21148914 -127634558 + (TA)n Simple_repeat Simple_repeat 1 180 0 813 313 19 8 chr11 21148989 21149245 -127634227 - MIR SINE MIR 0 262 4 182 178 44 0 chr11 21149700 21149745 -127633727 + CT-rich Low_complexity Low_complexity 2 48 0 393 299 92 37 chr11 21150222 21150439 -127633033 - MIR SINE MIR 0 262 34 2665 16 0 0 chr11 21152069 21152372 -127631100 - AluY SINE Alu -8 303 1 325 154 13 13 chr11 21152600 21152678 -127630794 + C-rich Low_complexity Low_complexity 3 80 0 1657 155 7 7 chr11 21152690 21152980 -127630492 - AluSx SINE Alu -22 290 1 2210 111 7 0 chr11 21153033 21153340 -127630132 + AluSx SINE Alu 1 309 -3 506 252 13 45 chr11 21154635 21154790 -127628682 + MER5A DNA MER1_type 1 150 -39 279 0 0 0 chr11 21161708 21161739 -127621733 + (TG)n Simple_repeat Simple_repeat 2 32 0 607 239 18 39 chr11 21161744 21161963 -127621509 - L1MC4 LINE L1 0 8042 7713 316 297 70 8 chr11 21162661 21162789 -127620683 + MLT1J LTR MaLR 4 139 -372 450 262 47 47 chr11 21162866 21163057 -127620415 + MLT1H LTR MaLR 95 285 -264 527 282 85 38 chr11 21163286 21163587 -127619885 + MLT1J LTR MaLR 133 511 0 563 225 191 0 chr11 21163957 21164130 -127619342 + MIR SINE MIR 46 251 -11 643 222 232 0 chr11 21164747 21164932 -127618540 - MLT1C LTR MaLR 0 505 278 2014 138 3 3 chr11 21164942 21165240 -127618232 - AluSx SINE Alu -12 300 3 2149 147 90 21 chr11 21165242 21165629 -127617843 - MSTC LTR MaLR -14 414 1 912 181 63 19 chr11 21165638 21165843 -127617629 - MLT1C LTR MaLR -220 247 34 1113 260 137 34 chr11 21166321 21167213 -127616259 - L2 LINE L2 0 3313 2334 4083 183 69 22 chr11 21167248 21168219 -127615253 - L1MB8 LINE L1 -16 6162 5144 748 263 35 13 chr11 21168235 21168463 -127615009 - L2 LINE L2 -1007 2307 2075 9274 38 0 4 chr11 21170420 21172205 -127611267 - L1PA4 LINE L1 -90 6065 4288 * 28571 46 5 3 chr11 21172198 21176504 -127606968 + L1PA5 LINE L1 1835 6151 -3 3051 169 2 35 chr11 21177155 21177486 -127605986 - MLT2B1 LTR ERVL 0 520 209 2126 113 3 0 chr11 21177486 21177809 -127605663 - AluSp SINE Alu 0 324 1 3051 169 2 35 chr11 21177809 21177991 -127605481 - MLT2B1 LTR ERVL -311 209 23 632 188 0 10 chr11 21177991 21178087 -127605385 + AluJo SINE Alu 125 219 -93 473 292 30 24 chr11 21179306 21179474 -127603998 + MLT1K LTR MaLR 1 169 -419 1409 209 82 47 chr11 21179995 21180079 -127603393 + MLT1D LTR MaLR 113 193 -312 1942 136 61 0 chr11 21180079 21180359 -127603113 + AluSg SINE Alu 1 297 -13 1409 209 82 47 chr11 21180359 21180638 -127602834 + MLT1D LTR MaLR 193 489 -16 235 253 103 0 chr11 21180683 21180770 -127602702 + MIR SINE MIR 167 262 0 2013 164 19 82 chr11 21180960 21181376 -127602096 - MLT1B LTR MaLR 0 390 1 198 298 77 48 chr11 21181633 21181737 -127601735 + MIR SINE MIR 35 141 -121 870 282 185 9 chr11 21182143 21182569 -127600903 - MLT1J LTR MaLR -2 509 9 2385 87 0 10 chr11 21182639 21182948 -127600524 - AluY SINE Alu -5 306 1 345 263 17 59 chr11 21183138 21183256 -127600216 - MIR SINE MIR -65 197 85 1977 140 0 0 chr11 21183724 21184003 -127599469 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21184003 21184034 -127599438 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2361 92 3 0 chr11 21184191 21184485 -127598987 + AluSp SINE Alu 1 295 -18 199 295 35 157 chr11 21184528 21184789 -127598683 - MIR SINE MIR -14 248 20 22 0 0 0 chr11 21184789 21184811 -127598661 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr11 21185270 21185297 -127598175 + (AGGTG)n Simple_repeat Simple_repeat 1 27 0 215 292 111 103 chr11 21186219 21186579 -127596893 - L2 LINE L2 -1 3271 2909 2350 95 3 10 chr11 21187442 21187746 -127595726 - AluSp SINE Alu -11 302 1 326 320 16 8 chr11 21189139 21189264 -127594208 - MIR SINE MIR -85 177 52 380 250 116 0 chr11 21189507 21189619 -127593853 - MLT1A1 LTR MaLR -19 530 406 495 281 20 7 chr11 21189774 21189927 -127593545 - MLT1H LTR MaLR -387 162 8 238 288 72 36 chr11 21190241 21190352 -127593120 + L2 LINE L2 2733 2847 -467 253 108 0 77 chr11 21190358 21190423 -127593049 - AluSp/q SINE Alu -1 302 243 357 293 161 51 chr11 21190741 21191096 -127592376 + L2 LINE L2 2816 3209 -104 1152 249 20 64 chr11 21192073 21192419 -127591053 + MER46C DNA MER2_type 1 331 -7 1085 209 35 97 chr11 21193296 21193607 -127589865 - MLT1A1 LTR MaLR -68 297 6 265 289 36 0 chr11 21193932 21194015 -127589457 - L2 LINE L2 -517 2797 2712 355 294 28 0 chr11 21194453 21194562 -127588910 + L2 LINE L2 3197 3308 -5 1009 177 27 5 chr11 21194793 21194979 -127588493 - MLT1D LTR MaLR -315 190 1 3775 200 125 112 chr11 21194981 21196333 -127587139 - MLT1D-int LTR MaLR 0 1371 3 2072 217 36 36 chr11 21196336 21196830 -127586642 - MLT1D LTR MaLR 0 505 12 1221 211 58 12 chr11 21196919 21197261 -127586211 - Charlie5 DNA MER1_type 0 2624 2267 1031 234 36 53 chr11 21197288 21197625 -127585847 - L1ME1 LINE L1 -5 6161 5831 * 1131 231 79 50 chr11 21197620 21198012 -127585460 - L1MEc LINE L1 -4036 2360 1981 1171 128 37 46 chr11 21198012 21198230 -127585242 - L1PA16 LINE L1 -1 6165 5950 1131 231 79 50 chr11 21198230 21198820 -127584652 - L1MEc LINE L1 -4415 1981 1187 928 121 0 35 chr11 21198834 21198975 -127584497 + AluJo SINE Alu 1 136 -176 27 0 0 0 chr11 21198987 21199014 -127584458 + AT_rich Low_complexity Low_complexity 1 27 0 3110 244 96 22 chr11 21199022 21200010 -127583462 - L1MEc LINE L1 -5223 1173 113 711 194 0 0 chr11 21200018 21200147 -127583325 - MER3 DNA MER1_type -87 122 41 529 225 66 53 chr11 21200242 21200393 -127583079 + MIR SINE MIR 96 248 -14 316 258 32 0 chr11 21200553 21200646 -127582826 - MIR SINE MIR -51 211 116 228 286 168 8 chr11 21200666 21200785 -127582687 + MIR SINE MIR 85 222 -40 2353 131 71 13 chr11 21201117 21201498 -127581974 - MER57A LTR ERV1 0 403 1 513 252 94 19 chr11 21201498 21201657 -127581815 - MER57A-int LTR ERV1 0 7537 7367 491 170 113 104 chr11 21201660 21201890 -127581582 - LTR54 LTR ERV1 -271 239 8 294 99 197 14 chr11 21201921 21201992 -127581480 - L1MA3 LINE L1 -2 6303 6220 1890 253 48 52 chr11 21201992 21202308 -127581164 - MER57A-int LTR ERV1 -406 7131 6816 2144 115 7 3 chr11 21202308 21202603 -127580869 - AluSx SINE Alu -16 296 1 1890 253 48 52 chr11 21202603 21202887 -127580585 - MER57A-int LTR ERV1 -721 6816 6533 27 0 0 0 chr11 21202891 21202918 -127580554 + AT_rich Low_complexity Low_complexity 1 27 0 5909 104 11 31 chr11 21202943 21203991 -127579481 - L1PA16 LINE L1 -9 6157 5148 35321 56 9 2 chr11 21203996 21210095 -127573377 - L1PA3 LINE L1 -1 6154 3 1395 207 15 9 chr11 21210095 21210428 -127573044 - L1P LINE L1 -749 5397 5063 1967 145 3 14 chr11 21210428 21210725 -127572747 - MER1B DNA MER1_type 0 339 46 9508 204 17 8 chr11 21210740 21212849 -127570623 - L1 LINE L1 -1075 5787 3660 16125 137 54 36 chr11 21212854 21215809 -127567663 - L1PBa LINE L1 -3854 3008 1 2164 123 0 9 chr11 21215812 21216128 -127567344 - AluSq SINE Alu 0 313 1 1060 153 0 17 chr11 21216136 21216312 -127567160 - AluJb SINE Alu -7 305 133 28 79 0 0 chr11 21216321 21216384 -127567088 + AT_rich Low_complexity Low_complexity 1 63 0 272 288 0 25 chr11 21216384 21216464 -127567008 - L2 LINE L2 -15 3298 3221 2164 64 35 7 chr11 21216583 21216865 -127566607 + AluY SINE Alu 1 290 -21 443 293 24 36 chr11 21216968 21217135 -127566337 - MIR SINE MIR -73 189 25 227 325 171 8 chr11 21217798 21217921 -127565551 + MIR3 SINE MIR 1 143 -65 754 316 60 0 chr11 21218261 21218495 -127564977 + MIR SINE MIR 12 259 -3 300 275 82 0 chr11 21218624 21218759 -127564713 - L1ME LINE L1 -380 5784 5640 223 302 63 24 chr11 21218775 21218901 -127564571 - L3 LINE CR1 -70 1507 1377 192 317 50 40 chr11 21218956 21219057 -127564415 + L2 LINE L2 2870 2971 -342 358 296 20 0 chr11 21219129 21219227 -127564245 - MIR SINE MIR -123 139 40 379 278 17 68 chr11 21219523 21219699 -127563773 - L3 LINE CR1 -613 964 798 229 224 61 0 chr11 21219703 21219752 -127563720 + MIR3 SINE MIR 132 183 -25 1043 183 113 0 chr11 21219780 21219966 -127563506 + MER3 DNA MER1_type 1 207 -2 29 60 0 0 chr11 21220067 21220117 -127563355 + AT_rich Low_complexity Low_complexity 1 50 0 375 284 11 0 chr11 21220119 21220207 -127563265 - L2 LINE L2 -20 3252 3164 430 275 148 7 chr11 21220546 21220695 -127562777 - MLT1I LTR MaLR -142 267 98 222 37 0 0 chr11 21221035 21221062 -127562410 + (CA)n Simple_repeat Simple_repeat 2 28 0 2336 88 0 16 chr11 21221812 21222118 -127561354 - AluSg SINE Alu -9 301 1 2092 163 7 74 chr11 21222136 21222554 -127560918 - MLT1B LTR MaLR 0 390 1 319 118 59 0 chr11 21222771 21222822 -127560650 + L1MC4 LINE L1 6650 6703 -1339 * 358 240 0 52 chr11 21222798 21222894 -127560578 - L1MC4 LINE L1 -1339 6703 6613 1091 263 99 27 chr11 21222949 21223314 -127560158 - MLT1I LTR MaLR 0 409 19 409 268 16 63 chr11 21223543 21223663 -127559809 + MIR SINE MIR 2 112 -150 2117 139 3 3 chr11 21223663 21223964 -127559508 - AluSx SINE Alu -11 301 1 409 268 16 63 chr11 21223964 21224031 -127559441 + MIR SINE MIR 112 181 -81 531 247 123 0 chr11 21224049 21224211 -127559261 + MIR SINE MIR 78 259 -3 293 235 0 0 chr11 21224221 21224289 -127559183 + MIR SINE MIR 184 251 -11 1883 129 109 34 chr11 21224442 21224791 -127558681 - THE1C LTR MaLR 0 375 1 10060 132 7 61 chr11 21224791 21226458 -127557014 - THE1C-int LTR MaLR 0 1580 4 1447 131 206 38 chr11 21226461 21226781 -127556691 - THE1C LTR MaLR 0 375 2 266 404 18 0 chr11 21227229 21227338 -127556134 - MIR3 SINE MIR -52 156 46 3704 127 27 2 chr11 21227389 21227940 -127555532 - L1PA16 LINE L1 -2 6164 5600 663 241 156 48 chr11 21227945 21228215 -127555257 - L1ME3A LINE L1 -9 6161 5863 7737 47 2 0 chr11 21228239 21229480 -127553992 - L1PA6 LINE L1 -2 6152 4913 6555 207 11 7 chr11 21229480 21231265 -127552207 - L1PA16 LINE L1 -545 5621 3830 252 167 0 0 chr11 21231295 21231343 -127552129 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 196 283 0 0 chr11 21232106 21232152 -127551320 - MIR SINE MIR -63 145 100 186 276 250 32 chr11 21232361 21232517 -127550955 + L3b LINE CR1 1198 1387 -196 558 282 69 25 chr11 21233268 21233470 -127550002 + MIR SINE MIR 49 259 -3 405 287 16 16 chr11 21234486 21234608 -127548864 - L2 LINE L2 -5 3308 3187 * 442 308 0 2 chr11 21234604 21234719 -127548753 + MIR SINE MIR 49 162 -46 384 276 109 35 chr11 21235234 21235408 -127548064 - L2 LINE L2 -1 3312 3126 2191 257 82 106 chr11 21235414 21236892 -127546580 - L2 LINE L2 0 3313 1899 2846 104 5 8 chr11 21236892 21237266 -127546206 - THE1C LTR MaLR -2 373 1 2191 257 82 106 chr11 21237266 21237836 -127545636 - L2 LINE L2 -1414 1899 1317 249 210 12 49 chr11 21238362 21238405 -127545067 + CT-rich Low_complexity Low_complexity 5 45 -37 2197 112 0 0 chr11 21238405 21238692 -127544780 - AluSg SINE Alu -23 287 1 249 210 12 49 chr11 21238692 21238729 -127544743 + CT-rich Low_complexity Low_complexity 45 82 0 370 241 145 42 chr11 21238870 21239111 -127544361 + L1MC4 LINE L1 6796 7061 -981 412 252 34 27 chr11 21239129 21239276 -127544196 + MIR SINE MIR 84 231 -31 258 216 0 63 chr11 21239298 21239409 -127544063 + (TTA)n Simple_repeat Simple_repeat 2 105 0 230 252 29 12 chr11 21240238 21240322 -127543150 + MIR SINE MIR 15 102 -106 909 182 118 0 chr11 21240622 21240809 -127542663 - MER3 DNA MER1_type 0 209 1 456 280 76 0 chr11 21241604 21241736 -127541736 - L2 LINE L2 0 3313 3172 372 274 159 0 chr11 21241724 21241837 -127541635 - MIR SINE MIR 0 262 132 * 785 165 0 24 chr11 21242390 21242560 -127540912 - FLAM_A SINE Alu 0 133 4 33294 36 1 2 chr11 21242830 21246833 -127536639 - L1P LINE L1 -987 5159 1164 8323 220 17 37 chr11 21246836 21249048 -127534424 - L1 LINE L1 -1002 5144 2976 658 280 13 36 chr11 21249048 21249273 -127534199 - MER57-int LTR ERV1 -999 6538 6319 1950 209 34 13 chr11 21249288 21249666 -127533806 - MER57A LTR ERV1 -9 394 9 189 327 55 107 chr11 21250115 21250387 -127533085 - L2 LINE L2 -23 3249 2992 2478 91 17 74 chr11 21251210 21251494 -127531978 - L1PB1 LINE L1 -4 6147 5891 2304 117 0 0 chr11 21251494 21251803 -127531669 + AluSx SINE Alu 1 309 -3 2478 91 17 74 chr11 21251803 21251923 -127531549 - L1PB1 LINE L1 -260 5891 5766 817 98 0 0 chr11 21251923 21252025 -127531447 - AluSg/x SINE Alu -15 295 194 1968 124 17 3 chr11 21252127 21252417 -127531055 - AluSg SINE Alu -16 294 1 2810 96 10 5 chr11 21252418 21252816 -127530656 - L1PB1 LINE L1 -371 5780 5381 198 0 0 0 chr11 21252889 21252911 -127530561 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2240 120 3 0 chr11 21252962 21253262 -127530210 + AluSg SINE Alu 1 301 -9 31275 54 9 4 chr11 21253281 21257577 -127525895 - L1PA5 LINE L1 -5 6149 1826 9531 32 2 4 chr11 21257577 21259443 -127524029 + L1PA4 LINE L1 4294 6155 0 31275 54 9 4 chr11 21259443 21259880 -127523592 - L1PA5 LINE L1 -4328 1826 1393 497 224 206 0 chr11 21260828 21260976 -127522496 - MER5A DNA MER1_type -3 186 4 2954 96 3 0 chr11 21261397 21261760 -127521712 - THE1B LTR MaLR 0 364 1 1956 145 3 3 chr11 21262017 21262306 -127521166 + AluSx SINE Alu 5 293 -19 1331 303 152 32 chr11 21262528 21263337 -127520135 + L2 LINE L2 2007 2912 -402 353 257 22 103 chr11 21263337 21263473 -127519999 - MLT1H LTR MaLR 0 549 425 286 281 70 31 chr11 21263647 21263775 -127519697 - MLT1I LTR MaLR -261 148 16 823 282 70 37 chr11 21263787 21264170 -127519302 + L2 LINE L2 2906 3301 -12 475 291 7 27 chr11 21264712 21264860 -127518612 - MIR3 SINE MIR -48 160 16 480 222 25 30 chr11 21265261 21265416 -127518056 + MIR SINE MIR 10 164 -62 369 0 0 0 chr11 21265510 21265551 -127517921 + (CA)n Simple_repeat Simple_repeat 1 41 0 746 103 43 0 chr11 21266392 21266509 -127516963 - MSTC LTR MaLR 0 428 307 * 887 172 7 7 chr11 21266505 21266656 -127516816 - MSTC LTR MaLR -277 151 1 279 287 43 43 chr11 21267194 21267309 -127516163 + L2 LINE L2 2843 2957 -315 2799 132 9 29 chr11 21267350 21267804 -127515668 - L1PB3 LINE L1 0 6154 5710 708 35 0 0 chr11 21267817 21267904 -127515568 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 500 343 35 0 chr11 21267906 21268049 -127515423 - L2 LINE L2 -9 3263 3116 1638 190 3 7 chr11 21268273 21268573 -127514899 + AluJo SINE Alu 12 310 -2 411 229 59 0 chr11 21268573 21268691 -127514781 - L1ME3 LINE L1 -8 6154 6030 3517 222 83 46 chr11 21268714 21269507 -127513965 - L1ME3 LINE L1 -204 5960 5198 1660 172 3 24 chr11 21269507 21269832 -127513640 - AluJo SINE Alu 0 319 1 3517 222 83 46 chr11 21269832 21269968 -127513504 - L1ME3 LINE L1 -966 5198 5069 264 30 0 0 chr11 21269968 21270001 -127513471 + (TG)n Simple_repeat Simple_repeat 2 34 0 3517 222 83 46 chr11 21270001 21270421 -127513051 - L1ME3 LINE L1 -1095 5069 4666 1371 214 16 58 chr11 21270421 21270734 -127512738 - AluJo SINE Alu -12 300 1 3517 222 83 46 chr11 21270734 21271212 -127512260 - L1ME3 LINE L1 -1498 4666 3947 2293 85 3 0 chr11 21271212 21271518 -127511954 + AluSp SINE Alu 1 307 0 3517 222 83 46 chr11 21271518 21271569 -127511903 - L1ME3 LINE L1 -2217 3947 3899 199 305 71 88 chr11 21272076 21272315 -127511157 + L3 LINE CR1 49 283 -1294 1221 312 34 34 chr11 21272566 21272837 -127510635 - MLT1K LTR MaLR -40 548 275 231 36 0 0 chr11 21272837 21272865 -127510607 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1221 312 34 34 chr11 21272865 21273129 -127510343 - MLT1K LTR MaLR -312 276 13 591 367 65 11 chr11 21273170 21273448 -127510024 + L3 LINE CR1 412 704 -873 527 288 42 119 chr11 21274274 21274490 -127508982 + L3 LINE CR1 707 938 -639 2338 110 7 0 chr11 21274490 21274800 -127508672 - AluSx SINE Alu 0 312 1 527 288 42 119 chr11 21274800 21274825 -127508647 + L3 LINE CR1 938 963 -614 2484 43 40 0 chr11 21274825 21275124 -127508348 - AluY SINE Alu 0 311 1 527 288 42 119 chr11 21275124 21275242 -127508230 + L3 LINE CR1 963 1039 -538 678 211 60 70 chr11 21275252 21275279 -127508193 - MER20 DNA MER1_type -22 197 171 2076 95 0 71 chr11 21275279 21275605 -127507867 - AluY SINE Alu -8 303 1 678 211 60 70 chr11 21275605 21275776 -127507696 - MER20 DNA MER1_type -48 171 1 476 249 59 35 chr11 21275780 21275949 -127507523 + L3 LINE CR1 1056 1228 -349 235 341 0 11 chr11 21275993 21276081 -127507391 + CT-rich Low_complexity Low_complexity 4 90 0 500 161 63 7 chr11 21276112 21276240 -127507232 - L1MB4 LINE L1 -16 6168 6032 1438 204 107 18 chr11 21276787 21277125 -127506347 - MLT1A2 LTR MaLR 0 374 7 374 345 35 11 chr11 21277419 21277593 -127505879 + L3 LINE CR1 1369 1546 -31 1036 194 75 0 chr11 21277594 21277795 -127505677 - MER20 DNA MER1_type -3 216 1 290 247 65 0 chr11 21277948 21278025 -127505447 - MIR SINE MIR -83 179 98 208 344 0 0 chr11 21282449 21282513 -127500959 - MIR SINE MIR -115 93 30 506 217 127 68 chr11 21282839 21283060 -127500412 - MER102a DNA MER1_type -3 327 94 340 141 127 0 chr11 21283094 21283165 -127500307 - L1MB2 LINE L1 -84 6087 6008 375 227 45 18 chr11 21283235 21283345 -127500127 + MER104 DNA Tc2 68 180 0 382 311 28 57 chr11 21283479 21283656 -127499816 - MER5B DNA MER1_type -5 173 2 1722 174 13 13 chr11 21283824 21284123 -127499349 + AluJo SINE Alu 1 299 -13 308 284 88 31 chr11 21284474 21284668 -127498804 - L2 LINE L2 -238 3034 2830 893 172 18 12 chr11 21284752 21284921 -127498551 - L1MB2 LINE L1 -2 6169 6000 819 157 0 11 chr11 21285075 21285439 -127498033 + C-rich Low_complexity Low_complexity 1 360 0 630 171 0 29 chr11 21285582 21285752 -127497720 + C-rich Low_complexity Low_complexity 3 167 0 488 199 11 39 chr11 21285762 21285943 -127497529 + CT-rich Low_complexity Low_complexity 3 178 0 675 220 8 30 chr11 21285952 21286084 -127497388 - FLAM_A SINE Alu -4 129 1 209 216 0 0 chr11 21286249 21286286 -127497186 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 325 299 163 14 chr11 21286689 21286983 -127496489 - L1ME4a LINE L1 -38 6083 5746 280 291 182 9 chr11 21287585 21287695 -127495777 - L2 LINE L2 -1 3271 3143 2025 119 9 38 chr11 21287709 21288028 -127495444 + AluSq SINE Alu 1 310 -3 556 225 31 8 chr11 21288396 21288525 -127494947 + MIR SINE MIR 44 175 -87 247 189 0 19 chr11 21288540 21288593 -127494879 - L2 LINE L2 0 3313 3262 515 290 86 27 chr11 21288661 21288882 -127494590 + MIR SINE MIR 4 237 -25 381 326 163 31 chr11 21289632 21289920 -127493552 + L2 LINE L2 2942 3267 -5 225 0 0 0 chr11 21290051 21290076 -127493396 + (T)n Simple_repeat Simple_repeat 1 25 0 497 343 17 11 chr11 21291342 21291520 -127491952 - MIR3 SINE MIR -13 195 17 1316 288 133 42 chr11 21291994 21293033 -127490439 - L2 LINE L2 0 3313 2168 210 143 0 0 chr11 21293293 21293304 -127490168 + (TAA)n Simple_repeat Simple_repeat 1 11 -31 1847 125 7 46 chr11 21293304 21293607 -127489865 + AluJb SINE Alu 5 295 -17 210 143 0 0 chr11 21293607 21293637 -127489835 + (TAA)n Simple_repeat Simple_repeat 10 42 0 465 186 52 0 chr11 21293992 21294089 -127489383 - MIR3 SINE MIR -3 205 104 205 215 19 28 chr11 21295116 21295223 -127488249 + CT-rich Low_complexity Low_complexity 2 107 0 198 340 0 0 chr11 21296304 21296357 -127487115 - L2 LINE L2 -15 3257 3205 293 255 46 85 chr11 21296589 21296742 -127486730 - L2 LINE L2 -260 3012 2866 348 324 138 7 chr11 21297189 21297334 -127486138 + MIR SINE MIR 20 183 -79 2261 109 3 0 chr11 21297625 21297928 -127485544 + AluSq SINE Alu 1 304 -9 808 128 0 0 chr11 21297933 21298042 -127485430 - MER50-int LTR ERV1 -7096 109 1 1053 148 42 51 chr11 21298127 21298283 -127485189 - MER50 LTR ERV1 -23 711 556 2512 65 0 3 chr11 21298283 21298589 -127484883 + AluY SINE Alu 1 305 -6 1053 148 42 51 chr11 21298589 21298648 -127484824 - MER50 LTR ERV1 -178 556 498 5951 192 29 48 chr11 21299301 21300632 -127482840 - L1MB8 LINE L1 -60 6118 4864 7922 191 35 86 chr11 21300632 21302480 -127480992 - MER52A LTR ERV1 0 1755 1 5951 192 29 48 chr11 21302480 21303666 -127479806 - L1MB8 LINE L1 -1314 4864 3657 297 319 22 22 chr11 21304080 21304265 -127479207 - L1M4 LINE L1 -2157 3989 3805 792 320 97 35 chr11 21304758 21305633 -127477839 - L1M4 LINE L1 -2692 3454 2526 262 233 41 0 chr11 21305743 21305816 -127477656 - MLT1J2 LTR MaLR -371 79 4 189 184 0 0 chr11 21305920 21305958 -127477514 + L2 LINE L2 3271 3308 -5 210 290 0 32 chr11 21306156 21306218 -127477254 + MIR SINE MIR 189 248 -14 201 154 0 0 chr11 21306224 21306263 -127477209 + (ATG)n Simple_repeat Simple_repeat 1 39 0 349 319 12 30 chr11 21307418 21307584 -127475888 + MIR SINE MIR 30 192 -70 458 299 84 86 chr11 21308483 21308839 -127474633 - L2 LINE L2 -340 2974 2618 2580 49 0 7 chr11 21308839 21309145 -127474327 + AluY SINE Alu 1 304 -7 458 299 84 86 chr11 21309145 21309337 -127474135 - L2 LINE L2 -696 2618 2427 378 279 87 0 chr11 21310280 21310384 -127473088 + MIR SINE MIR 30 142 -66 460 287 127 83 chr11 21310389 21310834 -127472638 - L2 LINE L2 0 3313 2836 339 25 0 0 chr11 21311206 21311246 -127472226 + (TATG)n Simple_repeat Simple_repeat 2 41 0 4925 140 18 27 chr11 21311250 21312212 -127471260 - L1PA16 LINE L1 -14 6152 5200 290 247 45 63 chr11 21312531 21312799 -127470673 + Charlie8 DNA MER1_type 75 420 -1997 203 261 0 0 chr11 21312885 21312931 -127470541 - MIR SINE MIR -167 95 50 20466 151 35 23 chr11 21312951 21315245 -127468227 - L1 LINE L1 -807 6758 4493 3398 69 14 2 chr11 21315245 21315682 -127467790 + MLT2A1 LTR ERVL 3 444 0 20466 151 35 23 chr11 21315682 21315812 -127467660 - L1 LINE L1 -3072 4493 4366 2028 124 0 0 chr11 21315812 21316079 -127467393 - AluSx SINE Alu -25 287 21 20466 151 35 23 chr11 21316079 21317075 -127466397 - L1 LINE L1 -3199 4366 3384 2048 103 59 7 chr11 21317075 21317365 -127466107 - AluY SINE Alu -6 305 1 20466 151 35 23 chr11 21317365 21317816 -127465656 - L1 LINE L1 -4181 3384 2940 339 44 0 0 chr11 21317816 21317861 -127465611 + (TG)n Simple_repeat Simple_repeat 2 46 0 20466 151 35 23 chr11 21317861 21318289 -127465183 - L1 LINE L1 -4625 2940 2519 207 0 0 0 chr11 21318289 21318312 -127465160 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 20466 151 35 23 chr11 21318312 21320654 -127462818 - L1 LINE L1 -5046 2519 12 7322 157 46 29 chr11 21320809 21321787 -127461685 - L1MA6 LINE L1 -12 6288 5328 4101 108 10 3 chr11 21321787 21322407 -127461065 - L1PB1 LINE L1 -2 6149 5526 7322 157 46 29 chr11 21322407 21324112 -127459360 - L1MA6 LINE L1 -972 5328 3561 2594 29 7 3 chr11 21324287 21324597 -127458875 + AluY SINE Alu 1 311 0 40 49 0 0 chr11 21325483 21325544 -127457928 + AT_rich Low_complexity Low_complexity 1 61 0 2424 77 3 0 chr11 21325544 21325854 -127457618 - AluY SINE Alu 0 311 1 10830 204 28 15 chr11 21325859 21326620 -127456852 - L1PA16 LINE L1 -9 6157 5408 183 42 0 0 chr11 21326620 21326644 -127456828 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2007 97 0 70 chr11 21326644 21326943 -127456529 - AluSx SINE Alu -31 281 4 10830 204 28 15 chr11 21326943 21329975 -127453497 - L1PA16 LINE L1 -757 5409 2315 349 275 0 0 chr11 21329998 21330078 -127453394 - MIR SINE MIR -130 132 53 260 247 111 0 chr11 21330333 21330414 -127453058 - MER103 DNA DNA 0 166 77 668 295 55 5 chr11 21330431 21330648 -127452824 - MIR SINE MIR -33 229 2 234 298 0 0 chr11 21331908 21331955 -127451517 - L2 LINE L2 -21 3292 3246 991 296 57 49 chr11 21331987 21332599 -127450873 + L2 LINE L2 2673 3299 -14 405 254 9 27 chr11 21332617 21332727 -127450745 - L2 LINE L2 -189 3083 2976 180 277 62 31 chr11 21333937 21334002 -127449470 + L2 LINE L2 3203 3269 -3 195 297 40 14 chr11 21334236 21334310 -127449162 - L2 LINE L2 -252 3020 2945 1923 136 24 53 chr11 21334631 21335006 -127448466 - THE1B LTR MaLR 0 364 1 254 331 24 60 chr11 21335117 21335283 -127448189 - MER5B DNA MER1_type -16 162 3 245 279 0 0 chr11 21335472 21335540 -127447932 - MLT1J LTR MaLR -45 466 399 2291 148 5 16 chr11 21335540 21335919 -127447553 + THE1C LTR MaLR 1 375 0 5034 124 35 43 chr11 21335919 21337415 -127446057 + THE1C-int LTR MaLR 1 1580 0 2392 114 44 6 chr11 21337415 21337776 -127445696 + THE1C LTR MaLR 1 375 0 688 270 56 0 chr11 21337926 21338104 -127445368 - MLT1J LTR MaLR -320 191 4 658 274 58 80 chr11 21338976 21339337 -127444135 - MLT1J2 LTR MaLR -72 378 26 514 271 166 18 chr11 21339584 21339813 -127443659 + MIR SINE MIR 3 262 0 1904 221 37 39 chr11 21340636 21340781 -127442691 - L1MC4a LINE L1 0 7808 7664 2251 116 0 3 chr11 21340781 21341083 -127442389 - AluSg SINE Alu -9 301 1 1904 221 37 39 chr11 21341083 21341526 -127441946 - L1MC4a LINE L1 -144 7664 7221 2002 118 50 0 chr11 21341549 21341828 -127441644 + AluSc SINE Alu 1 293 -16 32 0 0 0 chr11 21342025 21342057 -127441415 + AT_rich Low_complexity Low_complexity 1 32 0 206 156 22 0 chr11 21342101 21342146 -127441326 + G-rich Low_complexity Low_complexity 5 50 0 276 313 108 29 chr11 21342386 21342689 -127440783 - L2 LINE L2 -191 3081 2768 807 172 18 12 chr11 21342698 21342867 -127440605 - L1MB2 LINE L1 -2 6169 6000 2155 129 0 3 chr11 21343633 21343936 -127439536 - AluSx SINE Alu -10 302 1 639 111 0 0 chr11 21344000 21344099 -127439373 - LTR12 LTR ERV1 0 714 616 290 236 11 0 chr11 21344103 21344192 -127439280 - LTR30 LTR ERV1 -80 642 553 1432 73 0 150 chr11 21344193 21344467 -127439005 - LTR12 LTR ERV1 -429 285 53 248 231 0 0 chr11 21344467 21344519 -127438953 - LTR30 LTR ERV1 -670 52 1 279 54 0 0 chr11 21344612 21344649 -127438823 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 766 227 153 61 chr11 21344649 21344848 -127438624 - L2 LINE L2 -13 3300 3064 195 42 0 0 chr11 21344848 21344872 -127438600 + (GA)n Simple_repeat Simple_repeat 1 24 0 766 227 153 61 chr11 21344872 21344967 -127438505 - L2 LINE L2 -249 3064 2979 640 254 114 40 chr11 21344979 21345207 -127438265 - MIR SINE MIR 0 262 18 2296 183 51 26 chr11 21345360 21345851 -127437621 + MLT1D LTR MaLR 1 503 -2 186 208 0 0 chr11 21345969 21346017 -127437455 + G-rich Low_complexity Low_complexity 4 51 0 202 300 106 24 chr11 21346167 21346337 -127437135 - L2 LINE L2 -1226 2088 1905 202 284 198 12 chr11 21346408 21346489 -127436983 + L2 LINE L2 3177 3272 0 389 311 34 7 chr11 21349260 21349408 -127434064 + MIR SINE MIR 65 216 -46 279 0 0 0 chr11 21349505 21349536 -127433936 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 332 299 8 17 chr11 21349557 21349674 -127433798 - MIR SINE MIR -124 138 23 377 274 268 0 chr11 21349698 21349862 -127433610 + MIR SINE MIR 29 236 -26 787 275 34 50 chr11 21350188 21350382 -127433090 - MIR SINE MIR -3 259 69 2225 121 0 7 chr11 21350382 21350689 -127432783 - AluSx SINE Alu -7 305 1 787 275 34 50 chr11 21350689 21350756 -127432716 - MIR SINE MIR -193 69 2 278 270 0 27 chr11 21350856 21350930 -127432542 + CT-rich Low_complexity Low_complexity 1 72 0 304 312 128 62 chr11 21350992 21351329 -127432143 + L1M2 LINE L1 897 1255 -5594 1519 126 18 5 chr11 21351470 21351692 -127431780 - AluSx SINE Alu -87 225 1 1046 159 65 0 chr11 21351839 21352040 -127431432 - MSTB2 LTR MaLR -243 214 1 393 232 30 0 chr11 21352283 21352382 -127431090 + MER5A DNA MER1_type 4 105 -84 549 276 41 21 chr11 21353459 21353604 -127429868 + L2 LINE L2 3125 3272 0 203 293 52 0 chr11 21353780 21353838 -127429634 - MIR SINE MIR 0 262 202 458 314 41 6 chr11 21354172 21354344 -127429128 + MIR SINE MIR 77 254 -8 189 0 0 0 chr11 21354346 21354367 -127429105 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1144 315 85 44 chr11 21354529 21355544 -127427928 - L2 LINE L2 0 3272 2227 1721 83 9 4 chr11 21355558 21355787 -127427685 + AluY SINE Alu 82 311 0 9922 181 66 49 chr11 21356727 21358705 -127424767 + L1MC3 LINE L1 4888 6939 -846 186 43 0 0 chr11 21358705 21358728 -127424744 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 9922 181 66 49 chr11 21358728 21359591 -127423881 + L1MC3 LINE L1 6939 7785 0 345 316 67 26 chr11 21360613 21360806 -127422666 - MIR SINE MIR -34 228 28 1447 224 171 36 chr11 21361377 21361900 -127421572 - MLT1G LTR MaLR 0 590 34 513 300 61 72 chr11 21362122 21362494 -127420978 - MLT1J2 LTR MaLR -37 413 28 243 362 19 29 chr11 21362877 21362982 -127420490 - MIR SINE MIR -71 137 34 2061 109 17 7 chr11 21363151 21363444 -127420028 + AluSx SINE Alu 1 296 -16 765 278 46 5 chr11 21363655 21363871 -127419601 + MIR SINE MIR 33 257 -5 343 186 54 0 chr11 21364618 21364747 -127418725 + (TA)n Simple_repeat Simple_repeat 1 136 0 22 0 0 0 chr11 21364789 21364811 -127418661 + AT_rich Low_complexity Low_complexity 1 22 0 464 316 238 3 chr11 21365005 21365287 -127418185 + L3 LINE CR1 820 1167 -410 214 290 116 0 chr11 21365352 21365421 -127418051 + L3 LINE CR1 1190 1266 -311 310 233 220 53 chr11 21365777 21365927 -127417545 - MER5A DNA MER1_type -1 188 14 333 264 194 7 chr11 21366651 21366795 -127416677 + MIR SINE MIR 80 250 -12 478 321 0 25 chr11 21370867 21371029 -127412443 + MER5B DNA MER1_type 4 161 -17 480 277 169 15 chr11 21371472 21371667 -127411805 - MIR SINE MIR -32 230 6 247 261 178 38 chr11 21371857 21372014 -127411458 - MIR SINE MIR -11 251 73 21 0 0 0 chr11 21373816 21373837 -127409635 + AT_rich Low_complexity Low_complexity 1 21 0 9255 154 24 23 chr11 21374673 21374994 -127408478 - L1M1 LINE L1 -4369 3196 2877 339 44 0 0 chr11 21374994 21375039 -127408433 + (TG)n Simple_repeat Simple_repeat 2 46 0 9255 154 24 23 chr11 21375039 21376465 -127407007 - L1M1 LINE L1 -4688 2877 1448 370 233 9 60 chr11 21377279 21377395 -127406077 + MIR3 SINE MIR 84 193 -15 198 0 0 0 chr11 21379225 21379247 -127404225 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1958 149 313 23 chr11 21380272 21380748 -127402724 + LTR18B LTR ERVL 1 614 0 1618 191 14 0 chr11 21380754 21381042 -127402430 + HERVL18 LTR ERVL 1 292 -5755 5355 178 9 6 chr11 21381064 21381920 -127401552 + HERVL18 LTR ERVL 2718 3576 -2471 4610 135 8 8 chr11 21381925 21382593 -127400879 + HERVL18 LTR ERVL 4394 5061 -986 182 338 28 14 chr11 21383318 21383389 -127400083 + L2 LINE L2 2764 2835 -479 294 250 177 57 chr11 21383618 21383742 -127399730 + L2 LINE L2 3134 3272 0 207 200 59 82 chr11 21383829 21383914 -127399558 + MIR SINE MIR 110 192 -70 611 271 101 10 chr11 21385104 21385311 -127398161 + MIR SINE MIR 1 226 -36 1646 159 16 32 chr11 21385545 21385853 -127397619 - L1MC1 LINE L1 -17 6316 6014 10035 45 11 115 chr11 21385861 21387394 -127396078 - SVA Other Other 0 1386 13 1256 177 23 8 chr11 21387442 21387707 -127395765 - L1MA8 LINE L1 -17 6274 6006 639 280 95 4 chr11 21388702 21388945 -127394527 + LTR33 LTR ERVL 10 274 -247 332 367 8 0 chr11 21389161 21389289 -127394183 + MIR SINE MIR 37 165 -97 362 253 13 0 chr11 21390132 21390211 -127393261 + L2 LINE L2 3234 3313 0 394 248 190 0 chr11 21390514 21390651 -127392821 + MIR SINE MIR 100 262 0 296 280 112 16 chr11 21390740 21390865 -127392607 + MIR3 SINE MIR 42 178 -30 372 287 80 93 chr11 21391276 21391513 -127391959 - MIR SINE MIR -10 252 19 1688 141 33 10 chr11 21391515 21391820 -127391652 + L1MB4 LINE L1 5869 6180 0 281 97 10 194 chr11 21391828 21391931 -127391541 + L1MB8 LINE L1 6094 6177 -1 269 281 72 44 chr11 21391943 21392192 -127391280 + HAL1b LINE L1 231 486 -862 199 359 0 0 chr11 21392850 21392914 -127390558 - L2 LINE L2 -21 3251 3188 270 227 45 0 chr11 21393117 21393183 -127390289 - MLT1K LTR MaLR 0 588 520 220 343 50 36 chr11 21393399 21393539 -127389933 - MIR SINE MIR -109 153 12 480 278 83 7 chr11 21394447 21394591 -127388881 - LTR33 LTR ERVL -363 158 4 21 36 0 0 chr11 21394670 21394698 -127388774 + AT_rich Low_complexity Low_complexity 1 28 0 273 119 15 30 chr11 21394704 21394771 -127388701 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 435 65 0 0 chr11 21395082 21395144 -127388328 + Alu SINE Alu 246 307 -4 1782 158 0 24 chr11 21395270 21395568 -127387904 - AluJb SINE Alu -10 302 12 378 0 0 0 chr11 21395771 21395813 -127387659 + (TG)n Simple_repeat Simple_repeat 2 43 0 243 222 0 0 chr11 21396057 21396102 -127387370 + L3 LINE CR1 1521 1565 -12 375 270 74 34 chr11 21396673 21396821 -127386651 - MIR SINE MIR -89 173 20 1884 152 10 3 chr11 21396867 21397164 -127386308 - AluJo SINE Alu -13 299 1 2310 96 0 0 chr11 21397175 21397467 -127386005 - AluSq SINE Alu -21 292 1 271 295 156 8 chr11 21397531 21397653 -127385819 + MIR SINE MIR 47 186 -76 1360 301 84 38 chr11 21397751 21398522 -127384950 - L3 LINE CR1 -98 1479 673 592 200 0 0 chr11 21398522 21398607 -127384865 + FLAM_A SINE Alu 1 85 -57 524 100 0 0 chr11 21398615 21398685 -127384787 + L1MA1 LINE L1 6229 6298 -4 2187 68 11 4 chr11 21399584 21399895 -127383577 + AluY SINE Alu 2 314 0 2489 60 3 0 chr11 21401178 21401478 -127381994 + AluY SINE Alu 1 301 -10 250 354 63 8 chr11 21401907 21402034 -127381438 - L2 LINE L2 -1 3312 3179 539 337 47 5 chr11 21403484 21403677 -127379795 - MIR SINE MIR -61 201 1 722 252 103 93 chr11 21403794 21404191 -127379281 - MLT1J2 LTR MaLR -46 404 4 526 281 190 14 chr11 21404494 21404715 -127378757 + MIR SINE MIR 2 261 -1 242 303 82 109 chr11 21404720 21405024 -127378448 + L2 LINE L2 2976 3271 -1 1856 216 41 52 chr11 21405520 21406081 -127377391 - L1MC4 LINE L1 -2 8040 7486 213 175 0 0 chr11 21406478 21406518 -127376954 - L2 LINE L2 0 3313 3274 349 312 9 9 chr11 21407871 21407980 -127375492 + L2 LINE L2 3203 3311 -2 307 331 13 43 chr11 21408104 21408282 -127375190 + MIR3 SINE MIR 6 181 -65 446 229 185 19 chr11 21408749 21408906 -127374566 - MIR SINE MIR -1 261 79 1693 138 16 0 chr11 21409101 21409355 -127374117 + L1PA16 LINE L1 5889 6146 -20 21 36 0 0 chr11 21409408 21409436 -127374036 + AT_rich Low_complexity Low_complexity 1 28 0 587 287 32 11 chr11 21409479 21409667 -127373805 + L1MEc LINE L1 90 281 -5924 22 0 0 0 chr11 21409686 21409708 -127373764 + AT_rich Low_complexity Low_complexity 1 22 0 1777 56 82 17 chr11 21409717 21409950 -127373522 + L1PA6 LINE L1 5907 6154 0 2779 207 43 25 chr11 21409953 21410585 -127372887 - L1ME1 LINE L1 -10 6156 5514 440 261 115 100 chr11 21410711 21411066 -127372406 + L1MEc LINE L1 501 896 -5309 25 0 0 0 chr11 21411066 21411091 -127372381 + AT_rich Low_complexity Low_complexity 1 25 0 440 261 115 100 chr11 21411091 21411373 -127372099 + L1MEc LINE L1 896 1172 -5033 28 29 0 0 chr11 21411525 21411560 -127371912 + AT_rich Low_complexity Low_complexity 1 35 0 683 274 94 63 chr11 21411762 21412221 -127371251 - MLT1H LTR MaLR -37 512 40 490 303 34 29 chr11 21412268 21412617 -127370855 + L1MEc LINE L1 1398 1738 -869 28 61 0 0 chr11 21412696 21412745 -127370727 + AT_rich Low_complexity Low_complexity 1 49 0 1085 138 0 0 chr11 21412752 21412911 -127370561 + L1P3 LINE L1 79 237 -5638 * 11468 170 7 30 chr11 21412910 21415446 -127368026 + L1P3 LINE L1 734 3281 -3180 4992 82 10 44 chr11 21415445 21415751 -127367721 + L1PA8A LINE L1 5403 5718 -413 * 2341 100 0 0 chr11 21415751 21416050 -127367422 + AluSg SINE Alu 1 299 -11 4992 82 10 44 chr11 21416050 21416470 -127367002 + L1PA8A LINE L1 5718 6104 -27 53 0 0 0 chr11 21416472 21416525 -127366947 + AT_rich Low_complexity Low_complexity 1 53 0 1174 313 40 21 chr11 21417135 21417931 -127365541 + L1ME LINE L1 4893 5701 -469 1433 115 0 102 chr11 21418082 21418242 -127365230 - L1MA4A LINE L1 -262 6041 5925 2314 76 0 10 chr11 21418242 21418543 -127364929 - AluSg1 SINE Alu -11 298 1 1433 115 0 102 chr11 21418543 21418686 -127364786 - L1MA4A LINE L1 -378 5925 5769 4116 104 23 2 chr11 21418733 21419351 -127364121 - L1PB2 LINE L1 -7 6144 5514 * 9998 32 0 2 chr11 21419350 21421318 -127362154 + L1PA4 LINE L1 4191 6152 -3 1087 87 17 12 chr11 21419351 21421483 -127361989 - L1P5 LINE L1 -623 5528 5360 468 107 40 0 chr11 21421471 21421557 -127361915 - L1ME LINE L1 -367 5797 5709 * 344 235 52 26 chr11 21421605 21421720 -127361752 + L1ME3A LINE L1 6045 6162 -8 2359 292 81 46 chr11 21421756 21422693 -127360779 + L1ME LINE L1 2509 3411 -2735 1938 251 61 15 chr11 21422693 21423216 -127360256 - MLT1H LTR MaLR 0 549 3 2359 292 81 46 chr11 21423216 21424525 -127358947 + L1ME LINE L1 3411 4835 -1311 22 35 0 0 chr11 21424628 21424657 -127358815 + AT_rich Low_complexity Low_complexity 1 29 0 265 248 34 63 chr11 21424720 21424926 -127358546 + L1ME LINE L1 4963 5162 -984 750 300 43 35 chr11 21425023 21425509 -127357963 + L1ME LINE L1 5307 5783 -379 252 200 0 0 chr11 21425879 21425934 -127357538 + (TA)n Simple_repeat Simple_repeat 1 55 0 250 382 45 45 chr11 21426097 21426275 -127357197 - MER5A DNA MER1_type -3 186 9 329 212 0 0 chr11 21426398 21426464 -127357008 - MER5A DNA MER1_type -1 188 123 570 288 46 50 chr11 21426464 21426766 -127356706 + L1MB4 LINE L1 5 305 -6237 589 177 15 31 chr11 21426833 21426963 -127356509 + L1PA8 LINE L1 6045 6172 0 999 155 5 10 chr11 21426980 21427173 -127356299 + L1MA4 LINE L1 6105 6296 -4 3299 230 43 32 chr11 21427288 21427554 -127355918 + L1MB4 LINE L1 612 874 -5772 1592 204 3 37 chr11 21427554 21427877 -127355595 - AluJo SINE Alu 0 312 1 3299 230 43 32 chr11 21427877 21428880 -127354592 + L1MB4 LINE L1 874 1849 -4797 3577 226 23 23 chr11 21428885 21429816 -127353656 + L1MB4 LINE L1 3804 4734 -1910 * 3810 178 47 73 chr11 21429813 21430404 -127353068 + L1MB4 LINE L1 5448 6001 -677 5894 107 13 6 chr11 21430404 21431430 -127352042 + L1PA8A LINE L1 5098 6130 -1 3810 178 47 73 chr11 21431430 21432063 -127351409 + L1MB4 LINE L1 6001 6649 -29 557 252 24 0 chr11 21432075 21432198 -127351274 - MER5A DNA MER1_type -52 137 12 326 271 20 86 chr11 21432396 21432547 -127350925 + L2 LINE L2 2811 2951 -363 250 125 0 0 chr11 21432583 21432623 -127350849 - L1PA10 LINE L1 -7 6161 6122 1276 246 101 37 chr11 21432668 21433184 -127350288 - MLT1H LTR MaLR 0 549 1 594 241 8 0 chr11 21433246 21433379 -127350093 + MER45A DNA AcHobo 1 134 -44 265 271 171 16 chr11 21433415 21433544 -127349928 + L2 LINE L2 3165 3313 0 573 289 60 39 chr11 21433994 21434226 -127349246 - MIR SINE MIR -6 256 20 237 150 0 0 chr11 21434222 21434262 -127349210 - L2 LINE L2 -2 3311 3272 * 3304 132 62 11 chr11 21436895 21437456 -127346016 - MER4B LTR ERV1 -20 590 1 571 255 33 38 chr11 21438030 21438214 -127345258 + MER5A DNA MER1_type 7 189 0 35 0 0 0 chr11 21438438 21438473 -127344999 + AT_rich Low_complexity Low_complexity 1 35 0 283 240 40 13 chr11 21439363 21439438 -127344034 - MER81 DNA DNA 0 114 38 180 0 0 0 chr11 21439477 21439497 -127343975 + (TTA)n Simple_repeat Simple_repeat 2 21 0 488 273 55 38 chr11 21439556 21439739 -127343733 - MIR3 SINE MIR -3 205 20 2269 128 16 25 chr11 21441177 21441544 -127341928 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 21441615 21441636 -127341836 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr11 21441923 21441979 -127341493 + AT_rich Low_complexity Low_complexity 1 56 0 439 333 43 0 chr11 21442634 21442772 -127340700 - L2 LINE L2 -2 3270 3127 611 254 18 55 chr11 21443775 21443992 -127339480 - MER58C DNA MER1_type -6 209 1 503 290 70 20 chr11 21444023 21444223 -127339249 - MIR SINE MIR -21 241 32 477 336 64 70 chr11 21444724 21445194 -127338278 - L1MEd LINE L1 -5649 470 4 371 324 16 44 chr11 21445434 21445616 -127337856 + MIR SINE MIR 5 181 -81 806 211 111 54 chr11 21447604 21447883 -127335589 - MER2 DNA MER2_type -22 323 29 1642 159 23 36 chr11 21448022 21448323 -127335149 - AluSq SINE Alu -16 297 1 543 306 190 21 chr11 21448951 21449340 -127334132 + L3 LINE CR1 1051 1505 -72 244 236 167 35 chr11 21451365 21451509 -127331963 - MIR SINE MIR -9 253 91 644 298 62 13 chr11 21451701 21451926 -127331546 - MIR SINE MIR -12 250 15 2426 85 7 0 chr11 21452427 21452733 -127330739 + AluSx SINE Alu 1 308 -4 894 276 80 32 chr11 21452883 21453411 -127330061 - L1ME4a LINE L1 -1 6120 5568 587 165 66 0 chr11 21454188 21454309 -127329163 + L1MA8 LINE L1 6159 6287 -4 21 0 0 0 chr11 21454309 21454330 -127329142 + AT_rich Low_complexity Low_complexity 1 21 0 367 224 0 56 chr11 21454344 21454451 -127329021 - L1M4 LINE L1 -3903 2243 2143 262 299 19 28 chr11 21454895 21455002 -127328470 + MER5A DNA MER1_type 32 137 -52 849 219 66 31 chr11 21455293 21455521 -127327951 - MIR SINE MIR -11 251 16 225 378 0 0 chr11 21455678 21455776 -127327696 - L2 LINE L2 -240 3032 2935 202 297 93 8 chr11 21456188 21456306 -127327166 - L2 LINE L2 -862 2452 2325 333 319 83 56 chr11 21458227 21458814 -127324658 - L2 LINE L2 -346 2968 2366 1134 283 80 20 chr11 21458820 21459219 -127324253 - LTR16A LTR ERVL 0 450 28 317 273 102 28 chr11 21459429 21459605 -127323867 + L2 LINE L2 3125 3313 0 224 296 104 16 chr11 21459621 21459746 -127323726 - MIR3 SINE MIR -7 201 66 622 244 95 143 chr11 21461159 21461676 -127321796 - L2 LINE L2 -6 3307 2816 386 20 20 0 chr11 21461726 21461777 -127321695 + (TC)n Simple_repeat Simple_repeat 2 53 0 243 146 0 0 chr11 21461776 21461817 -127321655 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 243 39 29 chr11 21462101 21462204 -127321268 - LTR67 LTR ERVL -24 533 430 229 284 92 9 chr11 21462805 21462914 -127320558 - MLT1F LTR MaLR -106 436 319 303 146 0 0 chr11 21462988 21463043 -127320429 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 2049 116 32 0 chr11 21463100 21463384 -127320088 - AluSg SINE Alu -17 293 1 484 246 122 44 chr11 21463389 21463646 -127319826 - MLT1F LTR MaLR -289 266 1 2131 110 0 3 chr11 21463691 21464004 -127319468 + AluSx SINE Alu 1 312 0 411 323 23 0 chr11 21464056 21464186 -127319286 - L3 LINE CR1 -166 1411 1279 262 265 78 49 chr11 21464186 21464288 -127319184 + MIR SINE MIR 1 105 -157 341 301 0 0 chr11 21465366 21465469 -127318003 + MIR SINE MIR 160 262 0 23 0 0 0 chr11 21465891 21465914 -127317558 + AT_rich Low_complexity Low_complexity 1 23 0 480 232 118 119 chr11 21466079 21466169 -127317303 - MIR SINE MIR 0 262 173 1980 106 4 14 chr11 21466169 21466444 -127317028 + AluSc SINE Alu 32 303 -6 480 232 118 119 chr11 21466444 21466614 -127316858 - MIR SINE MIR -89 173 2 605 212 14 7 chr11 21466888 21467034 -127316438 + MER105 DNA DNA 34 180 -24 282 183 72 45 chr11 21467793 21467908 -127315564 - L1ME4a LINE L1 -2 6079 1234 793 267 17 13 chr11 21467939 21468175 -127315297 - LTR16A1 LTR ERVL 0 457 221 505 287 69 29 chr11 21469738 21469912 -127313560 - MER63A DNA MER1_type -29 181 1 661 274 25 0 chr11 21470476 21470633 -127312839 + MIR SINE MIR 101 261 -1 36 23 0 0 chr11 21470917 21470960 -127312512 + AT_rich Low_complexity Low_complexity 1 43 0 1814 155 0 34 chr11 21470961 21471257 -127312215 - AluJo SINE Alu -26 286 1 1585 110 77 7 chr11 21471259 21471558 -127311914 - L1MA4 LINE L1 0 6300 5981 192 264 139 0 chr11 21471565 21471637 -127311835 + L2 LINE L2 2993 3074 -198 1395 131 84 7 chr11 21471834 21472131 -127311341 - L1MA4 LINE L1 0 6300 5981 189 0 0 0 chr11 21472244 21472265 -127311207 + (A)n Simple_repeat Simple_repeat 1 21 0 598 238 44 6 chr11 21472456 21472637 -127310835 - MER58A DNA MER1_type -1 223 36 294 304 98 9 chr11 21477359 21477471 -127306001 + L2 LINE L2 3181 3302 -11 565 179 34 162 chr11 21477506 21477740 -127305732 + MIR SINE MIR 56 259 -3 218 320 13 13 chr11 21478888 21478966 -127304506 + MIR SINE MIR 5 82 -180 412 260 16 16 chr11 21479067 21479190 -127304282 - MIR SINE MIR -2 260 138 2266 109 0 0 chr11 21479417 21479711 -127303761 + AluSg SINE Alu 1 294 -16 2498 67 0 0 chr11 21479843 21480142 -127303330 + AluY SINE Alu 1 299 -12 230 333 108 21 chr11 21480173 21480266 -127303206 - MIR SINE MIR -90 118 18 1165 288 75 53 chr11 21480646 21481614 -127301858 + L1MEd LINE L1 328 1362 -4948 1791 164 17 0 chr11 21481614 21481906 -127301566 + AluJo SINE Alu 1 297 -15 1165 288 75 53 chr11 21481906 21482157 -127301315 + L1MEd LINE L1 1362 1606 -4704 230 262 48 12 chr11 21482267 21482351 -127301121 + L1ME LINE L1 5667 5753 -409 626 146 9 9 chr11 21482359 21482469 -127301003 - Tigger1 DNA MER2_type -1 2417 2308 456 153 153 0 chr11 21482472 21482570 -127300902 - Tigger1 DNA MER2_type -419 1999 1887 4051 121 18 12 chr11 21482636 21483296 -127300176 + L1PB1 LINE L1 5485 6148 -3 31 88 0 0 chr11 21483534 21483614 -127299858 + AT_rich Low_complexity Low_complexity 1 80 0 1196 218 4 13 chr11 21485096 21485335 -127298137 - MER8 DNA MER2_type -1 238 2 30 45 0 0 chr11 21485484 21485528 -127297944 + AT_rich Low_complexity Low_complexity 1 44 0 325 304 67 7 chr11 21486515 21486650 -127296822 - MLT1L LTR MaLR -165 450 308 752 273 39 43 chr11 21488204 21488460 -127295012 + MLT1I LTR MaLR 112 366 -43 923 205 95 15 chr11 21489580 21489906 -127293566 - MSTD LTR MaLR 0 396 1 188 65 0 32 chr11 21490509 21490540 -127292932 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 21 57 0 0 chr11 21490813 21490848 -127292624 + AT_rich Low_complexity Low_complexity 1 35 0 1240 309 110 28 chr11 21490973 21491836 -127291636 + L2 LINE L2 2398 3312 -1 198 0 0 0 chr11 21491836 21491858 -127291614 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 734 226 198 12 chr11 21492206 21492463 -127291009 - MLT1J2 LTR MaLR -122 328 24 387 0 0 0 chr11 21493532 21493575 -127289897 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 348 322 35 0 chr11 21493655 21493770 -127289702 + MER91C DNA MER1_type 21 139 -1 401 351 74 74 chr11 21493811 21494176 -127289296 - L2 LINE L2 -2 3270 2906 265 149 15 45 chr11 21494324 21494391 -127289081 + Charlie7 DNA MER1_type 41 105 -2507 265 327 107 27 chr11 21495104 21495254 -127288218 + MIR SINE MIR 3 164 -98 3001 69 0 12 chr11 21495278 21495682 -127287790 + L1PA8 LINE L1 5767 6165 -7 361 343 144 3 chr11 21496076 21496388 -127287084 - L2 LINE L2 -398 2916 2561 2416 98 3 0 chr11 21496580 21496886 -127286586 - AluSp SINE Alu -6 307 1 244 311 107 10 chr11 21496923 21497026 -127286446 + L2 LINE L2 3159 3271 -1 588 236 0 8 chr11 21497555 21497678 -127285794 + L2 LINE L2 3191 3312 -1 209 205 64 64 chr11 21497816 21497894 -127285578 - MIR SINE MIR -153 109 32 2028 122 3 23 chr11 21498490 21498794 -127284678 - AluSx SINE Alu -14 298 1 33 25 0 0 chr11 21498977 21499017 -127284455 + AT_rich Low_complexity Low_complexity 1 40 0 449 135 80 0 chr11 21499021 21499184 -127284288 + (TA)n Simple_repeat Simple_repeat 1 176 0 569 121 58 17 chr11 21499221 21499394 -127284078 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 211 56 33 chr11 21499401 21499491 -127283981 - L1MC4 LINE L1 -1339 6703 6612 338 181 38 0 chr11 21499497 21499602 -127283870 + (TA)n Simple_repeat Simple_repeat 2 110 0 235 239 0 54 chr11 21499602 21499694 -127283778 - L1MC4 LINE L1 -1340 6702 6616 347 184 27 41 chr11 21500597 21500725 -127282747 - MIR SINE MIR -50 212 88 2331 80 3 3 chr11 21500743 21501042 -127282430 - AluY SINE Alu -12 299 1 415 296 17 9 chr11 21501157 21501272 -127282200 + L2 LINE L2 3198 3313 0 421 290 0 10 chr11 21501378 21501478 -127281994 - MIR SINE MIR -108 154 56 196 333 148 0 chr11 21501785 21501866 -127281606 - MIR SINE MIR -98 164 72 205 176 0 0 chr11 21502840 21502874 -127280598 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 339 18 0 chr11 21503621 21503677 -127279795 - L2 LINE L2 -19 3253 3197 611 287 91 23 chr11 21504327 21504592 -127278880 + MLT1I LTR MaLR 100 382 -27 585 312 85 68 chr11 21505253 21505827 -127277645 - MLT1K LTR MaLR 0 588 5 272 301 146 24 chr11 21505887 21506010 -127277462 + MIR3 SINE MIR 6 143 -65 235 317 208 0 chr11 21506091 21506192 -127277280 - MIR3 SINE MIR -45 163 42 247 276 86 29 chr11 21506491 21506596 -127276876 + MIR SINE MIR 2 112 -150 440 375 92 19 chr11 21506915 21507438 -127276034 + L2 LINE L2 2334 2894 -420 183 300 0 33 chr11 21507701 21507761 -127275711 + L2 LINE L2 3242 3299 -14 516 268 76 13 chr11 21507795 21507952 -127275520 + MIR SINE MIR 31 197 -65 716 205 70 60 chr11 21509992 21510177 -127273295 - MER5A DNA MER1_type -2 187 1 697 266 34 34 chr11 21510759 21510835 -127272637 + MIR SINE MIR 25 100 -162 2656 91 13 11 chr11 21510835 21511207 -127272265 - THE1C LTR MaLR -2 373 1 697 266 34 34 chr11 21511207 21511337 -127272135 + MIR SINE MIR 99 231 -31 301 277 0 43 chr11 21511822 21511916 -127271556 - L1MC4 LINE L1 -1337 6705 6616 232 213 100 0 chr11 21511934 21512014 -127271458 - L1MC4 LINE L1 -1339 6703 6616 2166 89 45 3 chr11 21512073 21512365 -127271107 - AluY SINE Alu -7 304 1 376 283 0 58 chr11 21512402 21512522 -127270950 + MIR SINE MIR 31 143 -119 348 296 51 0 chr11 21512541 21512639 -127270833 - MIR SINE MIR -140 122 20 2425 66 0 16 chr11 21513188 21513493 -127269979 + AluY SINE Alu 1 300 -11 367 299 85 30 chr11 21514886 21515050 -127268422 - MIR SINE MIR -70 192 20 180 0 0 0 chr11 21515469 21515489 -127267983 + (A)n Simple_repeat Simple_repeat 1 20 0 276 247 52 13 chr11 21515901 21515978 -127267494 - MIR3 SINE MIR -25 183 104 186 292 21 83 chr11 21515969 21516065 -127267407 + MIR SINE MIR 36 125 -83 * 2081 78 4 11 chr11 21516187 21516457 -127267015 - AluSc SINE Alu -8 301 34 201 351 0 0 chr11 21516635 21516692 -127266780 + L2 LINE L2 3034 3090 -182 2102 140 6 26 chr11 21517003 21517354 -127266118 + MER2 DNA MER2_type 1 344 0 2071 91 24 11 chr11 21518777 21519064 -127264408 + AluSg SINE Alu 1 291 -19 1014 191 18 28 chr11 21520889 21521172 -127262300 + L1MD3 LINE L1 7715 7994 -1 1715 172 60 0 chr11 21521187 21521472 -127262000 + AluJo SINE Alu 4 305 -7 22 0 0 0 chr11 21521474 21521496 -127261976 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 21521598 21521634 -127261838 + AT_rich Low_complexity Low_complexity 1 36 0 717 22 0 0 chr11 21523665 21523754 -127259718 + L1PA2 LINE L1 6065 6153 -2 276 146 0 0 chr11 21524317 21524358 -127259114 - 5S rRNA rRNA -80 41 1 670 47 0 0 chr11 21524358 21524443 -127259029 - 5S rRNA rRNA -2 119 35 235 301 125 22 chr11 21525427 21525563 -127257909 - LTR16B LTR ERVL -269 195 46 25 65 0 0 chr11 21526435 21526481 -127256991 + AT_rich Low_complexity Low_complexity 1 46 0 279 262 97 58 chr11 21526571 21526674 -127256798 - L2 LINE L2 -8 3264 3158 385 356 83 11 chr11 21526923 21527103 -127256369 - MIR3 SINE MIR -10 198 6 33 0 0 0 chr11 21527250 21527283 -127256189 + AT_rich Low_complexity Low_complexity 1 33 0 259 295 105 19 chr11 21527646 21527751 -127255721 + L2 LINE L2 3141 3254 -18 36 53 0 0 chr11 21527805 21527862 -127255610 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr11 21528302 21528326 -127255146 + AT_rich Low_complexity Low_complexity 1 24 0 470 285 65 48 chr11 21529356 21529542 -127253930 + MIR SINE MIR 4 192 -70 1162 181 209 17 chr11 21529611 21529970 -127253502 + MSTC LTR MaLR 1 428 0 339 78 0 0 chr11 21530854 21530905 -127252567 + (CA)n Simple_repeat Simple_repeat 2 52 0 392 318 93 0 chr11 21531450 21531601 -127251871 - MIR3 SINE MIR -10 198 34 295 357 48 8 chr11 21532776 21532902 -127250570 - L2 LINE L2 0 3272 3142 287 262 135 29 chr11 21533633 21533877 -127249595 - HAL1 LINE L1 -49 2458 2189 210 347 93 20 chr11 21533987 21534137 -127249335 + MIR SINE MIR 57 217 -45 732 282 117 43 chr11 21534764 21535158 -127248314 - LTR16A LTR ERVL 0 450 28 2888 199 8 72 chr11 21535967 21536705 -127246767 - LTR8 LTR ERV1 0 691 1 1924 154 76 19 chr11 21537064 21537487 -127245985 - L1MC3 LINE L1 0 7785 7339 581 135 36 0 chr11 21537484 21537595 -127245877 - L1MC3 LINE L1 -779 7006 6892 * 308 318 103 0 chr11 21538112 21538219 -127245253 + L2 LINE L2 3154 3271 -1 208 357 20 77 chr11 21539881 21540185 -127243287 + L2 LINE L2 2776 3060 -212 361 303 34 25 chr11 21540333 21540452 -127243020 + MIR SINE MIR 8 127 -135 355 303 38 15 chr11 21540583 21540715 -127242757 + MLT2E LTR ERVL 38 172 -456 212 382 24 0 chr11 21541396 21541519 -127241953 + L2 LINE L2 2866 2991 -281 456 285 11 37 chr11 21542514 21542704 -127240768 + MIR SINE MIR 4 189 -65 986 207 5 28 chr11 21542986 21543203 -127240269 + MER20 DNA MER1_type 4 215 -4 596 259 68 76 chr11 21543439 21543690 -127239782 + MIR SINE MIR 12 260 -2 333 0 0 0 chr11 21544490 21544527 -127238945 + (CA)n Simple_repeat Simple_repeat 2 38 0 1088 161 20 5 chr11 21545389 21545588 -127237884 - MER20 DNA MER1_type -7 212 11 354 315 8 0 chr11 21545724 21545851 -127237621 - MER94 DNA DNA -6 128 1 235 186 29 71 chr11 21545881 21545951 -127237521 - MIR SINE MIR -124 138 72 366 297 132 11 chr11 21546127 21546337 -127237135 + MIR SINE MIR 15 255 -7 274 270 27 14 chr11 21546708 21546782 -127236690 + MIR3 SINE MIR 83 157 -51 240 237 35 26 chr11 21546919 21547033 -127236439 + L1ME4a LINE L1 6002 6116 -5 345 250 142 8 chr11 21547980 21548100 -127235372 + MIR SINE MIR 127 262 0 284 281 123 0 chr11 21548429 21548543 -127234929 - L2 LINE L2 0 3272 3145 585 256 68 32 chr11 21548695 21548945 -127234527 - MIR SINE MIR -1 261 3 2336 272 126 26 chr11 21549023 21550157 -127233315 + L2 LINE L2 2059 3313 0 513 287 22 22 chr11 21550159 21550340 -127233132 - MIR SINE MIR -17 245 65 531 0 0 0 chr11 21550761 21550820 -127232652 + (TTTAG)n Simple_repeat Simple_repeat 5 63 0 413 303 17 25 chr11 21551666 21551785 -127231687 - MER5B DNA MER1_type -60 118 1 424 129 0 0 chr11 21552685 21552747 -127230725 - MER57B LTR ERV1 -372 62 1 207 100 0 0 chr11 21552960 21552990 -127230482 + (CACCAT)n Simple_repeat Simple_repeat 4 33 0 183 100 0 0 chr11 21554091 21554121 -127229351 + (T)n Simple_repeat Simple_repeat 1 30 0 238 206 49 69 chr11 21554245 21554347 -127229125 - L1ME4a LINE L1 -67 6054 5955 584 211 65 0 chr11 21554377 21554500 -127228972 - FLAM_A SINE Alu -2 131 1 533 293 44 4 chr11 21554571 21554800 -127228672 - L1ME4a LINE L1 -245 5876 5639 260 289 41 21 chr11 21554956 21555053 -127228419 + MIR SINE MIR 66 164 -98 24 32 0 0 chr11 21555185 21555216 -127228256 + AT_rich Low_complexity Low_complexity 1 31 0 1986 118 18 4 chr11 21555245 21555574 -127227898 + AluSx SINE Alu 1 333 0 1989 125 7 4 chr11 21555858 21556165 -127227307 - AluSg SINE Alu 0 308 1 409 261 91 8 chr11 21556520 21556773 -127226699 - L1MEc LINE L1 -4839 1471 1198 282 100 0 50 chr11 21556767 21556827 -127226645 - L1PA15 LINE L1 -3 6162 6106 * 4209 101 5 9 chr11 21556824 21557481 -127225991 - L1PA13 LINE L1 -117 6046 5393 1755 186 5 0 chr11 21557478 21557855 -127225617 - L1PA13 LINE L1 -982 5164 4786 * 10575 170 23 8 chr11 21557855 21559991 -127223481 + L1PA13 LINE L1 2605 4774 -1372 473 262 88 55 chr11 21559993 21560213 -127223259 - L1MEc LINE L1 -4943 1176 965 249 57 0 0 chr11 21560213 21560248 -127223224 + (CA)n Simple_repeat Simple_repeat 1 35 0 473 262 88 55 chr11 21560248 21560553 -127222919 - L1MEc LINE L1 -5154 965 634 707 208 25 6 chr11 21560566 21560725 -127222747 + MER3 DNA MER1_type 1 162 -47 979 270 89 62 chr11 21560759 21561367 -127222105 - L1MEc LINE L1 -5492 627 4 259 252 145 38 chr11 21562057 21562188 -127221284 + L2 LINE L2 3017 3161 -152 360 194 14 14 chr11 21562219 21562291 -127221181 + MER5C DNA MER1_type 8 79 -245 2271 119 0 10 chr11 21562653 21562964 -127220508 - AluSx SINE Alu -4 308 1 626 274 117 33 chr11 21563447 21563866 -127219606 - L1ME4a LINE L1 -1 6120 5667 187 364 23 45 chr11 21564615 21564747 -127218725 + MIR SINE MIR 16 144 -64 24 32 0 0 chr11 21564795 21564826 -127218646 + AT_rich Low_complexity Low_complexity 1 31 0 2171 292 146 50 chr11 21566657 21568857 -127214615 - L2 LINE L2 0 3313 718 375 183 0 117 chr11 21568946 21569083 -127214389 - MER103 DNA DNA 0 166 46 21 36 0 0 chr11 21569088 21569116 -127214356 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 21569245 21569273 -127214199 + AT_rich Low_complexity Low_complexity 1 28 0 336 324 43 57 chr11 21569313 21569594 -127213878 - L1 LINE L1 -1631 4515 4239 1614 176 0 47 chr11 21570142 21570493 -127212979 - AluJb SINE Alu 0 339 3 22 88 0 0 chr11 21570805 21570862 -127212610 + AT_rich Low_complexity Low_complexity 1 57 0 1017 300 36 46 chr11 21572378 21572795 -127210677 - LTR16A LTR ERVL -14 436 24 1721 115 0 0 chr11 21573160 21573394 -127210078 - AluSx SINE Alu -16 296 63 418 306 0 0 chr11 21574193 21574301 -127209171 + MIR3 SINE MIR 99 206 -2 3409 107 6 2 chr11 21574510 21575006 -127208466 + L1PB1 LINE L1 5639 6136 -15 22 0 0 0 chr11 21575037 21575059 -127208413 + AT_rich Low_complexity Low_complexity 1 22 0 1223 267 120 24 chr11 21575248 21575998 -127207474 - L2 LINE L2 -1 3312 2496 477 252 120 45 chr11 21576088 21576422 -127207050 - L2 LINE L2 -181 3132 2776 2724 49 0 0 chr11 21576604 21576931 -127206541 - L1PA7 LINE L1 -5 6149 5823 385 255 135 87 chr11 21577496 21578281 -127205191 - L1ME4a LINE L1 -9 6112 5290 402 296 164 48 chr11 21578302 21579106 -127204366 - L1ME4a LINE L1 -920 5226 4330 509 315 76 13 chr11 21579465 21579703 -127203769 - MIR SINE MIR -8 254 2 327 321 82 41 chr11 21579843 21580039 -127203433 + MIR3 SINE MIR 3 206 -2 420 314 131 0 chr11 21580248 21580401 -127203071 - MIR3 SINE MIR -3 205 33 567 299 108 40 chr11 21580574 21581177 -127202295 + L1MC4a LINE L1 5258 5901 -1907 219 229 0 21 chr11 21582570 21582618 -127200854 + L2 LINE L2 2992 3038 -234 230 248 26 115 chr11 21582709 21582822 -127200650 + L2 LINE L2 3200 3302 -11 629 240 36 57 chr11 21583660 21583852 -127199620 + MIR SINE MIR 29 216 -46 1528 144 23 107 chr11 21584166 21584513 -127198959 - AluYb8 SINE Alu 0 318 1 671 347 3 45 chr11 21584601 21584938 -127198534 - L2 LINE L2 -31 3282 2960 288 276 153 0 chr11 21584956 21585054 -127198418 + MIR SINE MIR 35 147 -115 1027 190 56 36 chr11 21585533 21585861 -127197611 + MER33 DNA MER1_type 1 324 0 1604 260 83 89 chr11 21586081 21586274 -127197198 - MER21B LTR ERV1 -149 714 521 1791 167 21 0 chr11 21586274 21586473 -127196999 - AluSx SINE Alu 0 312 123 180 111 0 0 chr11 21586473 21586500 -127196972 + (TG)n Simple_repeat Simple_repeat 2 28 0 1791 167 21 0 chr11 21586500 21586626 -127196846 - AluSx SINE Alu -189 123 1 1604 260 83 89 chr11 21586626 21587129 -127196343 - MER21B LTR ERV1 -342 521 22 1236 290 83 34 chr11 21587187 21587981 -127195491 - L2 LINE L2 0 3313 2481 329 308 76 27 chr11 21587988 21588173 -127195299 - L2 LINE L2 -484 2830 2637 315 248 99 41 chr11 21589929 21590050 -127193422 + MIR SINE MIR 20 147 -115 372 190 25 165 chr11 21590055 21590152 -127193320 - L2 LINE L2 -2 3311 3202 2034 129 0 14 chr11 21590152 21590439 -127193033 + AluSx SINE Alu 7 289 -23 276 30 0 0 chr11 21590445 21590478 -127192994 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 372 190 25 165 chr11 21590478 21590531 -127192941 - L2 LINE L2 -116 3197 3176 22 0 0 0 chr11 21590621 21590643 -127192829 + AT_rich Low_complexity Low_complexity 1 22 0 2346 113 0 0 chr11 21591229 21591538 -127191934 + AluSx SINE Alu 1 309 -3 578 297 179 0 chr11 21591705 21591917 -127191555 - MIR SINE MIR 0 262 13 1123 71 0 7 chr11 21592629 21592783 -127190689 + L1PA11 LINE L1 6022 6174 0 23 33 0 0 chr11 21593116 21593146 -127190326 + AT_rich Low_complexity Low_complexity 1 30 0 292 324 9 38 chr11 21593259 21593364 -127190108 + MIR SINE MIR 20 121 -141 464 259 147 12 chr11 21594545 21594715 -127188757 + MIR SINE MIR 6 198 -64 226 217 43 14 chr11 21594815 21594884 -127188588 + MIR SINE MIR 179 249 -13 305 186 34 0 chr11 21597148 21597207 -127186265 - L2 LINE L2 -217 3055 2995 491 228 30 0 chr11 21597615 21597716 -127185756 + MER5A DNA MER1_type 9 112 -77 187 306 19 83 chr11 21597803 21597911 -127185561 + MER5A DNA MER1_type 16 116 -73 407 315 16 8 chr11 21598035 21598162 -127185310 - MER5B DNA MER1_type -1 177 50 260 278 0 42 chr11 21598208 21598280 -127185192 + MER5B DNA MER1_type 110 178 0 1051 146 195 71 chr11 21598944 21599211 -127184261 - AluJb SINE Alu -2 300 1 2507 134 23 28 chr11 21600091 21600525 -127182947 + MSTB1 LTR MaLR 1 432 0 2299 109 0 0 chr11 21600939 21601243 -127182229 + AluSx SINE Alu 1 304 -8 198 174 0 0 chr11 21602109 21602155 -127181317 + (CATA)n Simple_repeat Simple_repeat 4 49 0 24 0 0 0 chr11 21602387 21602411 -127181061 + AT_rich Low_complexity Low_complexity 1 24 0 230 281 99 42 chr11 21602561 21602946 -127180526 + L1M4 LINE L1 2311 2717 -3429 327 256 12 0 chr11 21603542 21603624 -127179848 - MIR SINE MIR -14 248 166 1067 281 48 33 chr11 21603889 21604366 -127179106 - L1MC4a LINE L1 -1872 5936 5449 255 61 0 0 chr11 21604366 21604399 -127179073 + (CA)n Simple_repeat Simple_repeat 2 34 0 1067 281 48 33 chr11 21604399 21604440 -127179032 - L1MC4a LINE L1 -2359 5449 5410 832 349 213 10 chr11 21604520 21605300 -127178172 + L2 LINE L2 1785 2722 -592 286 254 12 98 chr11 21605334 21605483 -127177989 - MIR SINE MIR -66 196 3 180 396 70 21 chr11 21605985 21606172 -127177300 + L2 LINE L2 2659 2854 -460 237 254 18 0 chr11 21606869 21606924 -127176548 - MIR SINE MIR -77 131 76 313 339 27 9 chr11 21607518 21607630 -127175842 + MER91B DNA MER1_type 36 149 -41 259 294 135 16 chr11 21607821 21607947 -127175525 + MIR SINE MIR 121 261 -1 781 296 50 0 chr11 21608343 21608583 -127174889 + MIR SINE MIR 11 262 0 351 307 129 7 chr11 21608597 21608737 -127174735 - L2 LINE L2 -1 3312 3156 450 354 122 8 chr11 21608768 21608831 -127174641 - L2 LINE L2 -235 3037 2983 1461 200 33 20 chr11 21608831 21609131 -127174341 + AluJo SINE Alu 3 306 -6 450 354 122 8 chr11 21609131 21609452 -127174020 - L2 LINE L2 -289 2983 2614 2224 84 0 26 chr11 21610306 21610616 -127172856 - AluY SINE Alu -9 302 1 256 283 0 0 chr11 21611181 21611234 -127172238 + MER58A DNA MER1_type 2 54 -170 738 256 64 0 chr11 21611262 21611434 -127172038 + MER58A DNA MER1_type 42 224 0 423 0 0 0 chr11 21611536 21611583 -127171889 + (TG)n Simple_repeat Simple_repeat 2 48 0 226 296 182 0 chr11 21611864 21611952 -127171520 - MIR SINE MIR -133 129 26 295 280 65 24 chr11 21613022 21613190 -127170282 - MER89 LTR ERV1 -3 556 382 195 301 14 14 chr11 21613963 21614036 -127169436 + MIR SINE MIR 25 97 -111 379 309 176 19 chr11 21614355 21614565 -127168907 + MIR SINE MIR 20 262 0 894 275 17 8 chr11 21615748 21615984 -127167488 + MIR SINE MIR 6 243 -19 529 267 82 5 chr11 21616513 21616708 -127166764 + MER63A DNA MER1_type 1 210 0 23 0 0 0 chr11 21616814 21616837 -127166635 + AT_rich Low_complexity Low_complexity 1 23 0 2147 126 48 28 chr11 21617020 21617377 -127166095 - THE1B LTR MaLR 0 364 1 11426 97 13 2 chr11 21617377 21618939 -127164533 - THE1B-int LTR MaLR 0 1580 1 2095 110 52 52 chr11 21618939 21619086 -127164386 - THE1B LTR MaLR 0 364 218 2172 138 3 0 chr11 21619086 21619383 -127164089 - AluSq SINE Alu -13 300 3 2095 110 52 52 chr11 21619383 21619599 -127163873 - THE1B LTR MaLR -145 219 1 560 341 102 25 chr11 21619693 21620124 -127163348 + L2 LINE L2 219 682 -2632 1577 166 57 24 chr11 21620197 21620493 -127162979 - AluJb SINE Alu -6 306 1 1100 212 145 50 chr11 21620747 21621229 -127162243 - LTR10B LTR ERV1 -5 542 15 24 0 0 0 chr11 21622433 21622457 -127161015 + AT_rich Low_complexity Low_complexity 1 24 0 507 17 0 0 chr11 21622669 21622729 -127160743 + (CA)n Simple_repeat Simple_repeat 2 61 0 333 307 227 0 chr11 21623075 21623238 -127160234 - MIR SINE MIR -11 251 52 466 168 10 10 chr11 21623353 21623454 -127160018 - L1MB8 LINE L1 0 6178 6078 819 179 19 71 chr11 21623454 21623498 -127159974 - L1MB4 LINE L1 -6 6174 6129 1835 162 0 10 chr11 21623498 21623794 -127159678 - AluSx SINE Alu -19 293 1 819 179 19 71 chr11 21623794 21623954 -127159518 - L1MB4 LINE L1 -51 6129 5979 968 163 22 11 chr11 21623985 21624163 -127159309 + L1M3 LINE L1 5554 5733 -447 222 37 0 0 chr11 21624299 21624326 -127159146 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7254 35 0 0 chr11 21624328 21625325 -127158147 - L1PA4 LINE L1 -13 6142 5141 1710 142 58 18 chr11 21625328 21625625 -127157847 - AluSq SINE Alu 0 308 1 714 212 52 65 chr11 21625631 21625862 -127157610 - MER106A DNA MER1_type 0 236 9 803 245 51 31 chr11 21625862 21626119 -127157353 + MIR SINE MIR 1 262 0 478 319 13 19 chr11 21626923 21627080 -127156392 + MIR SINE MIR 107 262 0 1421 200 108 3 chr11 21628225 21628560 -127154912 - MLT1A2 LTR MaLR -4 370 1 2811 181 11 65 chr11 21628591 21629238 -127154234 - LTR9 LTR ERV1 0 612 1 672 107 0 0 chr11 21629241 21629344 -127154128 + (TCCCC)n Simple_repeat Simple_repeat 2 104 0 297 218 10 20 chr11 21629452 21629553 -127153919 + CT-rich Low_complexity Low_complexity 4 103 0 888 269 25 21 chr11 21629782 21630020 -127153452 + MIR SINE MIR 23 261 -1 183 156 0 0 chr11 21630189 21630221 -127153251 + GA-rich Low_complexity Low_complexity 1 32 0 359 272 59 59 chr11 21630403 21630539 -127152933 + MIR3 SINE MIR 15 150 -58 1429 153 84 4 chr11 21630591 21630865 -127152607 - L1MC1 LINE L1 -18 6315 6020 432 292 36 22 chr11 21631370 21631507 -127151965 - MIR3 SINE MIR -49 159 21 359 296 127 73 chr11 21632577 21632797 -127150675 + MIR SINE MIR 7 238 -24 311 300 0 22 chr11 21634376 21634466 -127149006 + L2 LINE L2 2654 2741 -573 288 390 58 6 chr11 21634582 21634754 -127148718 + L2 LINE L2 2901 3081 -191 546 289 58 67 chr11 21635073 21635419 -127148053 - MLT1I LTR MaLR -57 352 10 396 323 82 9 chr11 21635429 21635649 -127147823 + L2 LINE L2 708 943 -2371 225 186 102 0 chr11 21635653 21635712 -127147760 - LTR16A LTR ERVL 0 450 386 490 343 12 0 chr11 21636083 21636255 -127147217 + MIR SINE MIR 48 221 -41 249 250 125 23 chr11 21636283 21636371 -127147101 - MIR SINE MIR -74 134 38 396 0 0 0 chr11 21638913 21638957 -127144515 + (CA)n Simple_repeat Simple_repeat 2 45 0 2040 333 95 29 chr11 21639497 21641021 -127142451 + L2 LINE L2 1685 3308 -5 914 330 23 6 chr11 21641216 21641567 -127141905 - MLT1I LTR MaLR -47 362 6 214 162 0 0 chr11 21642500 21642537 -127140935 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 395 179 98 71 chr11 21644618 21644730 -127138742 - MER5B DNA MER1_type -63 115 1 233 56 0 28 chr11 21646043 21646079 -127137393 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 221 306 190 0 chr11 21646224 21646345 -127137127 + MIR SINE MIR 48 191 -71 601 300 93 49 chr11 21646356 21646903 -127136569 - MLT1L LTR MaLR 0 615 45 345 82 0 0 chr11 21646903 21646952 -127136520 + (TG)n Simple_repeat Simple_repeat 2 50 0 644 256 97 38 chr11 21647155 21647504 -127135968 + L1ME4a LINE L1 5501 5869 -252 24 0 0 0 chr11 21647863 21647887 -127135585 + AT_rich Low_complexity Low_complexity 1 24 0 1506 180 104 9 chr11 21648033 21648185 -127135287 - MLT1A1 LTR MaLR 0 365 229 2369 88 7 0 chr11 21648185 21648482 -127134990 - AluSp SINE Alu -14 299 1 1506 180 104 9 chr11 21648482 21648656 -127134816 - MLT1A1 LTR MaLR -136 229 8 387 295 9 0 chr11 21649521 21649626 -127133846 + MIR SINE MIR 157 262 0 208 339 58 41 chr11 21649620 21649741 -127133731 - MIR SINE MIR -109 153 31 * 494 110 0 66 chr11 21649850 21649963 -127133509 + L1PB1 LINE L1 6060 6166 0 284 289 3 16 chr11 21650010 21650120 -127133352 + MIR SINE MIR 19 127 -81 1125 175 8 85 chr11 21650905 21651151 -127132321 + AluJo SINE Alu 11 237 -75 480 174 0 0 chr11 21651154 21651246 -127132226 + GA-rich Low_complexity Low_complexity 2 93 0 3609 153 14 39 chr11 21652814 21653533 -127129939 + L1MB3 LINE L1 5480 6180 -3 27 0 0 0 chr11 21653675 21653702 -127129770 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr11 21654779 21654826 -127128646 + AT_rich Low_complexity Low_complexity 1 47 0 393 275 74 58 chr11 21654953 21655142 -127128330 + MIR3 SINE MIR 17 208 0 261 146 0 0 chr11 21655764 21655812 -127127660 + (TG)n Simple_repeat Simple_repeat 1 48 0 7212 180 78 77 chr11 21655856 21657608 -127125864 - MER52A LTR ERV1 0 1755 1 352 291 133 30 chr11 21657617 21657782 -127125690 + MIR3 SINE MIR 21 202 -6 229 353 29 10 chr11 21657773 21657875 -127125597 - L2 LINE L2 -153 3119 3016 * 226 319 117 32 chr11 21658137 21658231 -127125241 - L2 LINE L2 -2 3311 3210 459 294 71 6 chr11 21658433 21658603 -127124869 + MIR SINE MIR 74 254 -8 489 308 58 39 chr11 21659066 21659274 -127124198 + MIR SINE MIR 22 233 -29 184 200 50 0 chr11 21659311 21659351 -127124121 + L2 LINE L2 3256 3297 -16 746 313 80 16 chr11 21659529 21660011 -127123461 - L2 LINE L2 -93 3220 2716 201 39 0 0 chr11 21660321 21660347 -127123125 + (CAT)n Simple_repeat Simple_repeat 2 27 0 248 275 83 42 chr11 21661717 21661837 -127121635 + MIR SINE MIR 73 197 -65 30 45 0 0 chr11 21662256 21662300 -127121172 + AT_rich Low_complexity Low_complexity 1 44 0 1058 263 48 35 chr11 21662882 21663258 -127120214 + L2 LINE L2 2921 3301 -12 421 303 36 12 chr11 21663326 21663491 -127119981 - MLT1L LTR MaLR -10 605 437 316 261 104 9 chr11 21664369 21664484 -127118988 - MIR3 SINE MIR -46 162 37 242 167 0 0 chr11 21665013 21665055 -127118417 + MIR SINE MIR 81 122 -140 388 0 0 0 chr11 21665318 21665361 -127118111 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2091 124 0 0 chr11 21665361 21665644 -127117828 - AluSq SINE Alu -1 325 1 180 186 23 23 chr11 21666337 21666380 -127117092 + MIR SINE MIR 111 153 -109 858 224 60 43 chr11 21668478 21668710 -127114762 + MIR SINE MIR 27 262 0 596 294 104 14 chr11 21668718 21668929 -127114543 - MIR SINE MIR -16 246 17 219 349 12 0 chr11 21669484 21669567 -127113905 + L2 LINE L2 3186 3269 -3 406 317 28 7 chr11 21669620 21669762 -127113710 + MIR SINE MIR 97 241 -21 273 340 64 21 chr11 21669856 21670044 -127113428 - LTR33 LTR ERVL -66 455 260 2066 128 0 3 chr11 21670338 21670628 -127112844 + AluSx SINE Alu 1 289 -23 512 237 20 7 chr11 21670777 21670929 -127112543 + MER103 DNA DNA 1 154 -12 2511 73 3 13 chr11 21671128 21671443 -127112029 + AluSp SINE Alu 1 312 -1 2190 128 22 27 chr11 21672863 21673229 -127110243 - THE1B LTR MaLR 0 364 1 709 277 30 131 chr11 21673248 21673677 -127109795 - L2 LINE L2 -5 3308 2923 363 217 6 121 chr11 21674210 21674341 -127109131 - MER5B DNA MER1_type -5 173 61 2003 163 119 13 chr11 21674341 21674728 -127108744 - MSTA LTR MaLR 0 428 1 363 217 6 121 chr11 21674728 21674753 -127108719 - MER5B DNA MER1_type -117 61 35 226 200 29 29 chr11 21674972 21675042 -127108430 + (TG)n Simple_repeat Simple_repeat 2 71 0 700 222 15 45 chr11 21675095 21675293 -127108179 + MIR SINE MIR 66 257 -5 249 186 0 0 chr11 21676883 21676926 -127106546 + (TG)n Simple_repeat Simple_repeat 1 43 0 562 239 8 31 chr11 21677003 21677133 -127106339 - L2 LINE L2 0 3272 3146 243 59 29 0 chr11 21677234 21677268 -127106204 + U2 snRNA snRNA 1 35 -153 381 252 138 38 chr11 21677277 21677436 -127106036 - MIR SINE MIR -81 181 7 380 329 36 14 chr11 21678007 21678147 -127105325 - L2 LINE L2 -1 3271 3129 233 348 155 37 chr11 21678556 21680323 -127103149 - L2 LINE L2 -656 2658 684 1940 135 0 34 chr11 21680388 21680685 -127102787 + AluSx SINE Alu 1 287 -25 240 281 0 0 chr11 21680685 21680774 -127102698 + L1MC4 LINE L1 6615 6703 -1339 645 267 70 0 chr11 21681253 21681425 -127102047 + MIR SINE MIR 2 185 -77 1888 178 42 31 chr11 21681446 21681975 -127101497 + MLT2A2 LTR ERVL 1 542 -12 181 240 80 0 chr11 21682494 21682544 -127100928 - MIR SINE MIR -140 122 69 23 33 0 0 chr11 21684232 21684262 -127099210 + AT_rich Low_complexity Low_complexity 1 30 0 405 0 0 0 chr11 21684577 21684622 -127098850 + (CA)n Simple_repeat Simple_repeat 2 46 0 2048 151 3 0 chr11 21684834 21685133 -127098339 + AluSx SINE Alu 1 300 -12 886 183 75 4 chr11 21685215 21685483 -127097989 - MER33 DNA MER1_type -37 287 1 2286 112 0 3 chr11 21685523 21685828 -127097644 - AluSc SINE Alu -5 304 1 390 217 104 0 chr11 21687049 21687155 -127096317 + MLT1B LTR MaLR 6 122 -268 1351 211 84 22 chr11 21687155 21687486 -127095986 - MLT1A2 LTR MaLR 0 593 24 983 195 58 27 chr11 21687513 21687774 -127095698 + MLT1B LTR MaLR 122 390 0 527 325 30 0 chr11 21688874 21689077 -127094395 + L2 LINE L2 2177 2385 -929 3250 122 0 36 chr11 21689083 21689338 -127094134 + L1MA3 LINE L1 5576 5839 -466 2117 128 27 0 chr11 21689338 21689634 -127093838 - AluSx SINE Alu -8 304 1 3250 122 0 36 chr11 21689634 21689962 -127093510 + L1MA3 LINE L1 5839 6138 -167 1010 119 23 6 chr11 21690015 21690191 -127093281 + L1MA3 LINE L1 6127 6305 0 182 405 0 0 chr11 21690226 21690305 -127093167 + L2 LINE L2 2376 2454 -860 904 329 19 62 chr11 21691249 21691732 -127091740 + L2 LINE L2 2852 3313 0 999 303 126 52 chr11 21691781 21692375 -127091097 - L3 LINE CR1 -87 1490 853 231 60 30 60 chr11 21694233 21694300 -127089172 + (TA)n Simple_repeat Simple_repeat 1 65 0 184 391 9 19 chr11 21694317 21694532 -127088940 - L3 LINE CR1 -714 863 651 347 237 110 17 chr11 21694897 21695070 -127088402 - L1ME4a LINE L1 -63 6058 5870 21 0 0 0 chr11 21696201 21696222 -127087250 + AT_rich Low_complexity Low_complexity 1 21 0 208 339 0 0 chr11 21696265 21696321 -127087151 - MIR SINE MIR -12 250 195 282 73 0 0 chr11 21696489 21696530 -127086942 + (TG)n Simple_repeat Simple_repeat 1 41 0 267 130 0 0 chr11 21697326 21697380 -127086092 + (TG)n Simple_repeat Simple_repeat 2 55 0 728 309 14 18 chr11 21697489 21697706 -127085766 - MIR SINE MIR 0 262 47 351 239 94 17 chr11 21697728 21697845 -127085627 + MER94 DNA DNA 1 126 -8 363 258 56 0 chr11 21699682 21699771 -127083701 + MIR SINE MIR 157 250 -12 227 139 0 0 chr11 21700398 21700434 -127083038 + MLT1B LTR MaLR 329 364 -26 5162 160 11 27 chr11 21700541 21701694 -127081778 - L1MA7 LINE L1 0 6291 5157 1645 199 11 0 chr11 21702075 21702357 -127081115 + AluJb SINE Alu 12 296 -16 325 186 59 108 chr11 21702916 21703018 -127080454 - MLT1H LTR MaLR 0 549 453 725 235 11 22 chr11 21703460 21703643 -127079829 - MER58A DNA MER1_type -15 209 29 409 95 0 168 chr11 21704823 21704918 -127078554 + MADE1 DNA Mariner 1 79 -1 204 314 59 39 chr11 21705028 21705130 -127078342 - MIR SINE MIR -148 114 11 886 234 14 29 chr11 21705507 21705716 -127077756 - MIR SINE MIR -39 223 18 2355 105 0 3 chr11 21705729 21706042 -127077430 + AluSx SINE Alu 1 312 0 638 253 166 25 chr11 21706063 21706558 -127076914 - LTR50 LTR ERVL -3 792 181 7278 45 2 0 chr11 21706660 21708267 -127075205 + L1PA4 LINE L1 4541 6151 -4 4126 212 57 13 chr11 21708270 21710467 -127073005 + L1MC1 LINE L1 3912 6193 -140 4351 189 67 65 chr11 21710467 21712023 -127071449 + L1M1 LINE L1 13 1875 -5690 1795 142 16 14 chr11 21712022 21712533 -127070939 + L1MA2 LINE L1 4957 5470 -746 * 298 196 0 0 chr11 21712533 21712584 -127070888 - AluSp SINE Alu -148 155 105 714 161 8 0 chr11 21712584 21712702 -127070770 + AluSg/x SINE Alu 179 297 -15 4952 133 20 2 chr11 21712702 21713531 -127069941 + L1MA2 LINE L1 5461 6304 0 30 0 0 0 chr11 21713531 21713561 -127069911 + AT_rich Low_complexity Low_complexity 1 30 0 603 219 15 0 chr11 21713566 21713703 -127069769 + L1MC1 LINE L1 6186 6324 -9 183 42 0 0 chr11 21715996 21716020 -127067452 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr11 21716593 21716640 -127066832 + (CA)n Simple_repeat Simple_repeat 2 48 0 738 256 64 0 chr11 21716742 21716914 -127066558 - MER58A DNA MER1_type 0 224 42 2221 91 0 25 chr11 21717561 21717880 -127065592 + AluY SINE Alu 1 311 0 833 250 161 23 chr11 21717901 21718508 -127064964 - LTR50 LTR ERVL -3 792 56 278 307 134 31 chr11 21718619 21718746 -127064726 + L2 LINE L2 3122 3261 -11 449 268 51 31 chr11 21719459 21719629 -127063843 + MIR3 SINE MIR 23 196 -12 2038 127 0 3 chr11 21719678 21719985 -127063487 - AluSx SINE Alu 0 306 1 22 0 0 0 chr11 21720289 21720311 -127063161 + AT_rich Low_complexity Low_complexity 1 22 0 276 175 0 0 chr11 21720488 21720551 -127062921 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 2360 93 3 0 chr11 21720709 21721010 -127062462 - AluSq SINE Alu -11 302 1 456 274 62 0 chr11 21721030 21721176 -127062296 + MIR SINE MIR 88 242 -20 218 311 74 30 chr11 21721899 21722034 -127061438 - L3 LINE CR1 -392 1185 1045 328 328 63 50 chr11 21722289 21722506 -127060966 + MIR SINE MIR 13 231 -31 240 301 175 0 chr11 21723136 21723239 -127060233 - MIR3 SINE MIR -3 205 85 309 304 111 23 chr11 21723302 21723473 -127059999 + MIR SINE MIR 71 256 -6 29 0 0 0 chr11 21724010 21724039 -127059433 + AT_rich Low_complexity Low_complexity 1 29 0 395 275 76 0 chr11 21724463 21724634 -127058838 - L1ME3 LINE L1 -227 5935 5752 23 0 0 0 chr11 21724962 21724985 -127058487 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 21725097 21725120 -127058352 + AT_rich Low_complexity Low_complexity 1 23 0 2126 121 3 0 chr11 21725486 21725783 -127057689 + AluSx SINE Alu 1 298 -14 474 259 32 79 chr11 21726399 21726495 -127056977 + MIR SINE MIR 2 86 -176 1517 222 50 56 chr11 21726495 21726999 -127056473 + MLT1D LTR MaLR 1 501 -4 474 259 32 79 chr11 21726999 21727091 -127056381 + MIR SINE MIR 86 181 -81 27 29 0 0 chr11 21728879 21728913 -127054559 + AT_rich Low_complexity Low_complexity 1 34 0 583 214 69 38 chr11 21729804 21729963 -127053509 - MER5B DNA MER1_type 0 178 15 1029 203 0 11 chr11 21729990 21730177 -127053295 + MER5A DNA MER1_type 5 189 0 1343 177 38 38 chr11 21730921 21731238 -127052234 - MER33 DNA MER1_type -7 317 1 208 178 0 67 chr11 21731626 21731671 -127051801 - L2 LINE L2 -18 3254 3213 735 314 78 61 chr11 21731692 21732246 -127051226 + L2 LINE L2 2736 3299 -14 1972 120 36 23 chr11 21732286 21732594 -127050878 - AluSq SINE Alu -1 312 1 291 325 13 0 chr11 21732684 21732761 -127050711 - MIR SINE MIR -177 85 8 1529 254 84 25 chr11 21733298 21733888 -127049584 - MLT1G LTR MaLR 0 590 1 345 330 49 71 chr11 21734179 21734446 -127049026 + L2 LINE L2 2962 3222 -50 228 245 0 0 chr11 21734551 21734604 -127048868 + CT-rich Low_complexity Low_complexity 1 53 0 31059 100 15 25 chr11 21735061 21741129 -127042343 - L1PA7 LINE L1 0 6469 364 1347 259 77 5 chr11 21741467 21741896 -127041576 - MLT1C LTR MaLR 0 467 8 449 329 34 19 chr11 21742582 21742789 -127040683 - MIR SINE MIR -6 256 47 187 349 0 15 chr11 21743209 21743275 -127040197 - MIR3 SINE MIR -133 75 11 921 193 17 73 chr11 21743313 21743613 -127039859 - L1MA9 LINE L1 -30 6282 6000 26 64 0 0 chr11 21743833 21743880 -127039592 + AT_rich Low_complexity Low_complexity 1 47 0 215 61 30 0 chr11 21744729 21744762 -127038710 + (TA)n Simple_repeat Simple_repeat 1 34 0 456 264 8 0 chr11 21744998 21745123 -127038349 - L1MB7 LINE L1 -9 6175 6050 3489 194 30 12 chr11 21745250 21746090 -127037382 - L1MB7 LINE L1 -126 6058 5204 219 189 0 0 chr11 21746340 21746393 -127037079 + CT-rich Low_complexity Low_complexity 3 55 0 712 337 91 38 chr11 21746598 21747196 -127036276 - L2 LINE L2 -188 3084 2458 2158 123 0 7 chr11 21747225 21747526 -127035946 - AluSx SINE Alu -1 311 13 292 274 210 16 chr11 21747614 21747738 -127035734 + MIR SINE MIR 111 258 -4 2980 223 36 76 chr11 21748158 21749501 -127033971 + L1MD2 LINE L1 4024 5261 -1098 1213 194 13 0 chr11 21749501 21749733 -127033739 - MER46A DNA MER2_type 0 236 2 2980 223 36 76 chr11 21749733 21750148 -127033324 + L1MD2 LINE L1 5261 5691 -668 568 214 180 89 chr11 21750145 21750439 -127033033 + L1MD2 LINE L1 5928 6194 -165 * 2580 116 3 11 chr11 21750439 21750817 -127032655 + THE1C LTR MaLR 1 375 0 9919 135 35 4 chr11 21750817 21752350 -127031122 + THE1C-int LTR MaLR 1 1580 0 2307 152 11 11 chr11 21752350 21752725 -127030747 + THE1C LTR MaLR 1 375 0 568 214 180 89 chr11 21752725 21752755 -127030717 + L1MD2 LINE L1 6193 6284 -75 367 176 44 11 chr11 21752801 21752892 -127030580 + L1MD2 LINE L1 6253 6346 -13 13725 193 15 29 chr11 21753769 21755202 -127028270 - L1MA5 LINE L1 -10 7352 5901 1907 157 141 5 chr11 21755202 21755577 -127027895 - MSTA LTR MaLR -2 426 1 13725 193 15 29 chr11 21755577 21757107 -127026365 - L1MA5 LINE L1 -1461 5901 4351 1766 181 0 3 chr11 21757107 21757406 -127026066 - AluJb SINE Alu -14 298 1 13725 193 15 29 chr11 21757406 21757583 -127025889 - L1MA5 LINE L1 -3011 4351 4173 2270 77 6 52 chr11 21757583 21757908 -127025564 - AluY SINE Alu -1 310 1 13725 193 15 29 chr11 21757908 21759647 -127023825 - L1MA5 LINE L1 -3189 4173 2552 1228 213 80 7 chr11 21759647 21759934 -127023538 - AluJb SINE Alu -4 308 1 13725 193 15 29 chr11 21759934 21760379 -127023093 - L1MA5 LINE L1 -4810 2552 2102 2065 275 59 29 chr11 21760390 21761055 -127022417 - L1MA5 LINE L1 -6524 685 1 228 143 0 0 chr11 21761144 21761186 -127022286 + (TAG)n Simple_repeat Simple_repeat 1 42 0 935 272 20 8 chr11 21761198 21761448 -127022024 - MIR SINE MIR -3 259 7 455 314 63 11 chr11 21761824 21761999 -127021473 + MIR SINE MIR 45 228 -34 522 244 16 0 chr11 21762660 21762787 -127020685 - MER94 DNA DNA 0 134 6 22 35 0 0 chr11 21762900 21762929 -127020543 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 21763342 21763363 -127020109 + AT_rich Low_complexity Low_complexity 1 21 0 690 98 25 0 chr11 21764089 21764211 -127019261 + (TCCCC)n Simple_repeat Simple_repeat 5 129 0 742 269 10 34 chr11 21764253 21764461 -127019011 - MER20 DNA MER1_type -15 204 2 335 210 74 37 chr11 21764521 21764602 -127018870 + MIR SINE MIR 71 154 -108 539 280 129 41 chr11 21765337 21765779 -127017693 + L2 LINE L2 2748 3270 -43 320 325 61 0 chr11 21765780 21765894 -127017578 + L2 LINE L2 3183 3303 -10 514 180 34 0 chr11 21765968 21766057 -127017415 - MIR SINE MIR -90 172 81 516 305 43 44 chr11 21766145 21766501 -127016971 + L1MC/D LINE L1 5455 5806 -335 233 218 0 18 chr11 21766527 21766582 -127016890 + (CA)n Simple_repeat Simple_repeat 2 55 0 1450 139 27 106 chr11 21767579 21767910 -127015562 + AluYb8 SINE Alu 1 305 -13 1818 167 7 0 chr11 21768206 21768512 -127014960 - AluSx SINE Alu -3 309 2 261 320 39 29 chr11 21768775 21768878 -127014594 - MIR SINE MIR -30 232 129 188 196 0 20 chr11 21768937 21768988 -127014484 + CT-rich Low_complexity Low_complexity 5 54 0 339 123 18 35 chr11 21769673 21769730 -127013742 - MLT1K LTR MaLR 0 588 533 * 1200 268 64 12 chr11 21769724 21770067 -127013405 - MER45C DNA AcHobo -5 948 588 192 77 0 0 chr11 21770466 21770492 -127012980 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 190 345 30 60 chr11 21771446 21771614 -127011858 + L2 LINE L2 2755 2917 -397 339 278 11 0 chr11 21773144 21773234 -127010238 - L2 LINE L2 -6 3307 3217 * 1337 314 85 23 chr11 21773229 21773889 -127009583 + L2 LINE L2 1918 2618 -696 184 313 10 50 chr11 21773902 21774001 -127009471 - L2 LINE L2 -1839 1475 1381 419 346 13 6 chr11 21774334 21774493 -127008979 + MIR SINE MIR 7 166 -96 464 344 26 0 chr11 21774505 21774656 -127008816 + MIR SINE MIR 107 261 -1 23 0 0 0 chr11 21777456 21777479 -127005993 + AT_rich Low_complexity Low_complexity 1 23 0 820 248 187 37 chr11 21777706 21778085 -127005387 - MLT1J2 LTR MaLR -14 436 1 212 221 78 65 chr11 21778949 21779026 -127004446 - MIR3 SINE MIR -11 197 120 343 247 11 0 chr11 21779203 21779292 -127004180 - MER33 DNA MER1_type 0 363 274 474 119 0 0 chr11 21779296 21779363 -127004109 - MER33 DNA MER1_type -244 80 14 21 0 0 0 chr11 21779388 21779409 -127004063 + AT_rich Low_complexity Low_complexity 1 21 0 242 287 103 11 chr11 21780150 21780237 -127003235 + MIR SINE MIR 48 142 -66 742 188 109 20 chr11 21780348 21780550 -127002922 + MIR SINE MIR 13 232 -30 187 317 55 55 chr11 21780583 21780728 -127002744 + L2 LINE L2 2720 2864 -450 388 263 29 26 chr11 21780797 21780989 -127002483 + MIR SINE MIR 6 243 -19 222 384 154 15 chr11 21781012 21781278 -127002194 + L2 LINE L2 2960 3262 -10 217 214 171 0 chr11 21781290 21781360 -127002112 + MIR SINE MIR 166 247 -15 559 237 40 20 chr11 21781665 21781817 -127001655 - MIR SINE MIR 0 262 108 1474 167 4 0 chr11 21782011 21782250 -127001222 - Tigger3(Golem) DNA MER2_type 0 3037 2798 405 61 0 0 chr11 21782250 21782299 -127001173 - THE1A LTR MaLR 0 355 307 5874 143 55 12 chr11 21782401 21782567 -127000905 - Tigger3b DNA MER2_type -1869 1159 1002 2262 108 70 3 chr11 21782567 21782908 -127000564 - THE1B LTR MaLR 0 364 1 5874 143 55 12 chr11 21782908 21783822 -126999650 - Tigger3b DNA MER2_type -2026 1002 33 1375 196 7 7 chr11 21783935 21784215 -126999257 + AluJb SINE Alu 1 280 -32 231 36 0 0 chr11 21784218 21784246 -126999226 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 508 270 191 63 chr11 21784508 21784937 -126998535 + MLT1K LTR MaLR 4 487 -101 530 313 123 9 chr11 21787876 21788103 -126995369 - MIR SINE MIR -5 257 5 222 294 230 8 chr11 21788978 21789104 -126994368 - MIR3 SINE MIR -18 190 37 475 330 30 30 chr11 21789246 21789446 -126994026 - MIR SINE MIR -43 219 20 228 298 141 41 chr11 21789466 21789587 -126993885 + MER94 DNA DNA 2 134 0 214 339 54 86 chr11 21789632 21789853 -126993619 - L2 LINE L2 -54 3218 3005 259 390 119 0 chr11 21791896 21792014 -126991458 + L2 LINE L2 3123 3254 -18 624 265 63 36 chr11 21792639 21792862 -126990610 - LTR16C LTR ERVL -12 479 251 300 297 20 0 chr11 21792933 21793034 -126990438 - LTR16C LTR ERVL -381 110 8 221 333 43 0 chr11 21794162 21794231 -126989241 + MIR SINE MIR 23 94 -168 1231 180 101 110 chr11 21794235 21794652 -126988820 - MLT2D LTR ERVL -1 413 1 318 358 98 45 chr11 21795004 21795403 -126988069 - L2 LINE L2 -15 3257 2838 307 258 157 0 chr11 21795874 21795963 -126987509 - L2 LINE L2 0 3313 3211 1400 101 14 0 chr11 21797062 21797270 -126986202 - L1PA13 LINE L1 0 6163 5953 757 208 139 5 chr11 21797366 21797568 -126985904 - MIR SINE MIR -32 230 2 2716 275 173 65 chr11 21797626 21799868 -126983604 - HAL1 LINE L1 -20 2487 4 279 71 0 0 chr11 21799943 21799985 -126983487 + (TG)n Simple_repeat Simple_repeat 2 43 0 271 318 194 0 chr11 21800066 21800195 -126983277 + MIR SINE MIR 2 155 -107 192 77 0 0 chr11 21800622 21800648 -126982824 + (TG)n Simple_repeat Simple_repeat 2 27 0 204 277 77 39 chr11 21802363 21802518 -126980954 + L2 LINE L2 1931 2091 -1223 25 0 0 0 chr11 21802689 21802714 -126980758 + AT_rich Low_complexity Low_complexity 1 25 0 321 333 28 21 chr11 21803551 21803695 -126979777 + L2 LINE L2 2176 2320 -994 1047 184 9 5 chr11 21803700 21803912 -126979560 - L1 LINE L1 -3773 2373 2161 * 8624 199 87 29 chr11 21803910 21805218 -126978254 + L1MCa LINE L1 132 1363 -5063 231 36 0 0 chr11 21805218 21805246 -126978226 + (TC)n Simple_repeat Simple_repeat 1 28 0 8624 199 87 29 chr11 21805246 21807789 -126975683 + L1MCa LINE L1 1363 4208 -2218 40655 50 2 0 chr11 21807793 21812847 -126970625 + L1P LINE L1 7 5069 -1077 811 61 0 10 chr11 21812947 21813046 -126970426 + AluY SINE Alu 30 127 -184 192 260 20 0 chr11 21813130 21813180 -126970292 + L2 LINE L2 3185 3235 -78 24 0 0 0 chr11 21813504 21813528 -126969944 + AT_rich Low_complexity Low_complexity 1 24 0 222 299 103 0 chr11 21813745 21813842 -126969630 - MIR SINE MIR -35 227 121 3244 101 11 0 chr11 21816201 21816665 -126966807 + L1PA7 LINE L1 5682 6150 -4 549 350 60 0 chr11 21817128 21817345 -126966127 - MIR SINE MIR -15 247 18 267 344 21 10 chr11 21817486 21817582 -126965890 - MIR SINE MIR -76 132 36 531 255 155 35 chr11 21817659 21817859 -126965613 - MIR SINE MIR -21 241 18 409 200 0 77 chr11 21818968 21819098 -126964374 + L1MA9 LINE L1 6193 6312 0 35 0 0 0 chr11 21819381 21819416 -126964056 + AT_rich Low_complexity Low_complexity 1 35 0 228 225 0 0 chr11 21819588 21819628 -126963844 - 5S rRNA rRNA -81 40 1 22 0 0 0 chr11 21819706 21819728 -126963744 + AT_rich Low_complexity Low_complexity 1 22 0 223 229 14 43 chr11 21820247 21820317 -126963155 + GA-rich Low_complexity Low_complexity 5 72 0 423 0 0 0 chr11 21821868 21821915 -126961557 + (TG)n Simple_repeat Simple_repeat 2 48 0 994 262 35 0 chr11 21822003 21822285 -126961187 - MER58B DNA MER1_type -21 320 29 448 322 79 40 chr11 21822314 21822433 -126961039 - L2 LINE L2 -71 3242 3129 189 0 0 0 chr11 21822433 21822454 -126961018 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 448 322 79 40 chr11 21822454 21822924 -126960548 - L2 LINE L2 -184 3129 2620 6903 62 0 0 chr11 21823106 21824131 -126959341 - L1PA5 LINE L1 -2 6152 5119 465 298 58 12 chr11 21824219 21824390 -126959082 - MIR SINE MIR -63 199 21 595 261 73 33 chr11 21824413 21824683 -126958789 - MLT1H1 LTR MaLR 0 555 249 1202 256 0 18 chr11 21825124 21825405 -126958067 + AluJo SINE Alu 1 276 -36 302 269 13 0 chr11 21825423 21825501 -126957971 - L1MC4 LINE L1 -1350 6692 6614 2242 137 7 81 chr11 21825687 21826133 -126957339 + L1M1 LINE L1 5342 5754 -549 901 197 65 90 chr11 21826155 21826465 -126957007 - MLT1A1 LTR MaLR -59 306 5 283 347 132 5 chr11 21826582 21826801 -126956671 - MIR SINE MIR -12 250 4 226 269 29 67 chr11 21826827 21826931 -126956541 + MIR SINE MIR 17 116 -92 203 313 122 8 chr11 21827008 21827139 -126956333 + L2 LINE L2 3047 3192 -121 235 192 25 50 chr11 21827986 21828106 -126955366 + (TA)n Simple_repeat Simple_repeat 1 117 0 350 293 35 57 chr11 21828126 21828355 -126955117 - L1ME LINE L1 -297 5824 5601 192 260 40 0 chr11 21828751 21828801 -126954671 + L2 LINE L2 3216 3267 -5 256 311 131 0 chr11 21828836 21828958 -126954514 + MIR SINE MIR 125 262 0 407 259 82 63 chr11 21829211 21829466 -126954006 + L2 LINE L2 2612 2871 -443 242 366 12 0 chr11 21829565 21829647 -126953825 + L2 LINE L2 2969 3051 -221 767 130 5 38 chr11 21829904 21830089 -126953383 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 519 252 56 14 chr11 21830465 21830608 -126952864 + MIR SINE MIR 44 192 -70 314 226 118 10 chr11 21830610 21830712 -126952760 - MLT1G1 LTR MaLR 0 555 443 759 300 86 46 chr11 21830752 21831125 -126952347 - MLT1G1 LTR MaLR -206 389 2 12261 94 17 4 chr11 21831150 21832020 -126951452 + L1P3 LINE L1 8 913 -5548 2426 56 0 0 chr11 21832020 21832374 -126951098 + AluY SINE Alu 1 354 0 12261 94 17 4 chr11 21832374 21833183 -126950289 + L1P3 LINE L1 913 1710 -4751 932 123 27 0 chr11 21833192 21833338 -126950134 + L1P3 LINE L1 3210 3359 -3102 10966 104 9 10 chr11 21833338 21835003 -126948469 + L1P3 LINE L1 3795 5458 -1003 225 65 0 0 chr11 21836134 21836165 -126947307 + (TG)n Simple_repeat Simple_repeat 2 32 0 672 254 38 22 chr11 21836839 21837024 -126946448 + MIR SINE MIR 20 207 -55 283 333 92 29 chr11 21837808 21837982 -126945490 - MIR SINE MIR -3 259 75 554 41 14 0 chr11 21838063 21838136 -126945336 + (TA)n Simple_repeat Simple_repeat 2 75 0 2124 138 34 20 chr11 21838396 21838752 -126944720 - THE1B LTR MaLR 0 364 4 293 342 53 32 chr11 21838867 21839057 -126944415 - MIR SINE MIR -49 213 20 353 381 74 33 chr11 21839178 21839422 -126944050 - L2 LINE L2 -5 3267 3014 207 276 90 30 chr11 21839612 21839746 -126943726 - L2 LINE L2 -460 2854 2713 764 216 117 30 chr11 21840519 21840629 -126942843 - MIR SINE MIR 0 262 163 1655 196 45 25 chr11 21840629 21840987 -126942485 + MLT1A1 LTR MaLR 1 365 0 764 216 117 30 chr11 21840987 21841107 -126942365 - MIR SINE MIR -99 163 12 312 342 76 0 chr11 21841288 21841446 -126942026 - MIR SINE MIR 0 262 93 269 264 73 27 chr11 21841637 21841747 -126941725 - L3b LINE CR1 -212 1371 1257 647 163 0 0 chr11 21841759 21841857 -126941615 + AluSg/x SINE Alu 153 250 -60 260 0 57 0 chr11 21841864 21841899 -126941573 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 190 152 0 65 chr11 21842240 21842286 -126941186 - L2 LINE L2 -7 3265 3223 1366 167 80 18 chr11 21842334 21842610 -126940862 - MSTC LTR MaLR 0 428 136 2248 146 34 48 chr11 21842610 21843028 -126940444 + MSTA LTR MaLR 17 428 0 671 150 18 9 chr11 21843031 21843144 -126940328 - MSTC LTR MaLR -313 115 2 579 337 0 5 chr11 21843146 21843336 -126940136 + MIR SINE MIR 74 262 0 268 304 0 14 chr11 21843354 21843423 -126940049 - L2 LINE L2 -44 3228 3161 222 299 174 33 chr11 21843425 21843666 -126939806 - L2 LINE L2 -404 2910 2636 2128 120 3 0 chr11 21843670 21843962 -126939510 - AluSx SINE Alu -19 293 1 196 252 70 19 chr11 21844086 21844169 -126939303 - MIR SINE MIR -118 90 7 244 175 0 53 chr11 21844385 21844442 -126939030 - L1ME4a LINE L1 -100 6021 5968 403 251 22 78 chr11 21845160 21845391 -126938081 - L1ME4a LINE L1 -287 5834 5617 200 404 10 0 chr11 21845839 21845943 -126937529 + MIR3 SINE MIR 87 191 -17 247 313 183 9 chr11 21846666 21846781 -126936691 + L2 LINE L2 3175 3309 -4 636 255 66 33 chr11 21846864 21847076 -126936396 + MIR SINE MIR 3 221 -41 252 86 0 0 chr11 21847185 21847220 -126936252 + (TG)n Simple_repeat Simple_repeat 2 36 0 1896 150 0 45 chr11 21847230 21847543 -126935929 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 21847543 21847564 -126935908 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 21897623 21897650 -126885822 + (T)n Simple_repeat Simple_repeat 1 27 0 225 207 0 17 chr11 21897650 21897708 -126885764 - L1ME LINE L1 -435 5729 5673 * 1360 279 65 27 chr11 21897704 21898378 -126885094 - L1MEc LINE L1 -4159 2237 1538 307 173 37 43 chr11 21898394 21898517 -126884955 - L1M4b LINE L1 -3952 3005 2882 2544 85 12 75 chr11 21898576 21898755 -126884717 + THE1C LTR MaLR 1 143 -232 1323 47 24 0 chr11 21898755 21898925 -126884547 + L1PA4 LINE L1 5981 6154 -1 2544 85 12 75 chr11 21898925 21899145 -126884327 + THE1C LTR MaLR 143 375 0 10173 127 32 7 chr11 21899145 21900687 -126882785 + THE1C-int LTR MaLR 1 1580 0 2483 118 30 3 chr11 21900687 21901052 -126882420 + THE1C LTR MaLR 1 375 0 310 244 118 17 chr11 21901059 21901178 -126882294 - L1MA9 LINE L1 -88 6224 6094 313 277 24 80 chr11 21901433 21901646 -126881826 - L1M4b LINE L1 -4436 2702 2502 3848 232 49 31 chr11 21901947 21903538 -126879934 - L1M4b LINE L1 -4640 2319 702 835 319 21 12 chr11 21903810 21904146 -126879326 - L1MEc LINE L1 -5977 419 81 30 45 0 0 chr11 21904339 21904383 -126879089 + AT_rich Low_complexity Low_complexity 1 44 0 282 303 101 53 chr11 21905606 21905794 -126877678 - L2 LINE L2 0 3313 3117 318 200 27 0 chr11 21905827 21905902 -126877570 - MER58 DNA MER1_type 0 2420 2344 26 30 0 0 chr11 21905936 21905969 -126877503 + AT_rich Low_complexity Low_complexity 1 33 0 208 283 0 0 chr11 21906115 21906175 -126877297 + CT-rich Low_complexity Low_complexity 2 61 0 219 381 67 8 chr11 21907127 21907261 -126876211 + L3b LINE CR1 1417 1558 -25 372 306 99 22 chr11 21907822 21908044 -126875428 - MIR SINE MIR -16 246 8 216 343 57 29 chr11 21908086 21908191 -126875281 - MIR SINE MIR -78 130 23 231 114 0 0 chr11 21908212 21908247 -126875225 + (TA)n Simple_repeat Simple_repeat 1 35 0 409 286 97 9 chr11 21908890 21909189 -126874283 - MLT1J LTR MaLR 0 409 68 1465 16 0 11 chr11 21909299 21909481 -126873991 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 349 186 86 0 chr11 21909562 21909632 -126873840 - MER96 DNA MER1_type? -93 82 7 1348 220 111 30 chr11 21910668 21911100 -126872372 + MLT1C LTR MaLR 1 467 0 2413 90 0 0 chr11 21911737 21912047 -126871425 - AluY SINE Alu -1 310 1 1789 169 179 15 chr11 21912061 21912216 -126871256 + MLT1C LTR MaLR 3 131 -336 351 0 0 0 chr11 21912216 21912255 -126871217 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chr11 21912254 21912285 -126871187 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1789 169 179 15 chr11 21912255 21912525 -126870947 + MLT1C LTR MaLR 131 463 -4 190 324 176 0 chr11 21913643 21913745 -126869727 + L2 LINE L2 3147 3266 -6 219 254 0 0 chr11 21913812 21913867 -126869605 - MIR SINE MIR -8 254 200 1786 167 10 13 chr11 21913955 21914267 -126869205 + AluJo SINE Alu 2 312 0 339 85 0 0 chr11 21914293 21914340 -126869132 + (GA)n Simple_repeat Simple_repeat 2 48 0 390 370 65 4 chr11 21914596 21914842 -126868630 + L2 LINE L2 2572 2832 -482 966 234 18 14 chr11 21915174 21915396 -126868076 - MER58A DNA MER1_type 0 224 2 248 336 58 0 chr11 21915396 21915500 -126867972 + L2 LINE L2 3195 3304 -9 224 353 38 23 chr11 21916229 21916391 -126867081 + MIR SINE MIR 16 180 -53 22 0 0 0 chr11 21916526 21916548 -126866924 + AT_rich Low_complexity Low_complexity 1 22 0 343 328 35 0 chr11 21916821 21916937 -126866535 - MIR3 SINE MIR -17 191 72 475 245 46 87 chr11 21917642 21917883 -126865589 - MLT1K LTR MaLR -36 552 322 42 36 0 0 chr11 21918061 21918117 -126865355 + AT_rich Low_complexity Low_complexity 1 56 0 352 158 51 62 chr11 21918117 21918294 -126865178 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 400 308 58 12 chr11 21918453 21918625 -126864847 + MIR SINE MIR 69 248 -14 708 305 43 4 chr11 21918673 21918906 -126864566 - L2 LINE L2 -176 3137 2896 2101 129 6 3 chr11 21918918 21919229 -126864243 + AluSp SINE Alu 1 312 -1 375 299 59 48 chr11 21920078 21920265 -126863207 + MIR SINE MIR 64 252 -10 193 368 66 29 chr11 21920476 21920612 -126862860 - L2 LINE L2 -457 2857 2717 319 367 47 7 chr11 21922237 21922387 -126861085 - L2 LINE L2 0 3272 3117 1397 211 54 90 chr11 21922456 21922935 -126860537 + MLT1C LTR MaLR 6 467 0 272 357 36 0 chr11 21922989 21923101 -126860371 - L2 LINE L2 -225 3047 2932 1176 323 55 23 chr11 21923273 21924019 -126859453 + L2 LINE L2 2553 3313 0 425 200 219 32 chr11 21924918 21925073 -126858399 - MIR SINE MIR -71 191 8 320 280 64 45 chr11 21925604 21925761 -126857711 - MIR SINE MIR -48 214 55 208 323 0 7 chr11 21925899 21925984 -126857488 + CT-rich Low_complexity Low_complexity 3 135 0 252 237 26 132 chr11 21926061 21926213 -126857259 + MIR SINE MIR 47 182 -80 675 303 40 9 chr11 21926951 21927179 -126856293 - MIR SINE MIR -9 253 19 851 267 43 93 chr11 21927498 21927918 -126855554 + L2 LINE L2 2915 3313 0 621 261 24 81 chr11 21927934 21928145 -126855327 - MER20 DNA MER1_type -5 214 16 192 310 17 17 chr11 21928189 21928247 -126855225 + L2 LINE L2 3241 3298 -15 5942 148 13 4 chr11 21928256 21929963 -126853509 - L1PB2 LINE L1 0 6151 4430 1223 123 5 0 chr11 21929986 21930173 -126853299 - AluSg/x SINE Alu -4 308 121 252 0 0 0 chr11 21930288 21930316 -126853156 + (A)n Simple_repeat Simple_repeat 1 28 0 439 222 154 25 chr11 21930368 21930530 -126852942 - MER112 DNA MER1_type -7 253 71 320 333 25 98 chr11 21930853 21931166 -126852306 + L2 LINE L2 2952 3241 -31 449 320 65 8 chr11 21931166 21931402 -126852070 + MIR SINE MIR 2 248 -14 817 200 12 30 chr11 21931782 21931947 -126851525 - MER20 DNA MER1_type 0 219 58 24 53 0 0 chr11 21932342 21932380 -126851092 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 21932926 21932952 -126850520 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chr11 21933139 21933176 -126850296 + (CA)n Simple_repeat Simple_repeat 2 38 0 246 273 80 11 chr11 21933354 21933442 -126850030 + L2 LINE L2 3184 3277 -36 466 280 60 55 chr11 21933480 21933719 -126849753 - MIR SINE MIR 0 262 22 273 325 87 16 chr11 21934363 21934489 -126848983 + MIR SINE MIR 29 163 -99 256 296 62 0 chr11 21934722 21934803 -126848669 - MIR SINE MIR -11 251 166 180 0 0 0 chr11 21935235 21935255 -126848217 + (T)n Simple_repeat Simple_repeat 1 20 0 336 339 54 15 chr11 21935776 21935906 -126847566 - L2 LINE L2 0 3272 3138 361 277 58 16 chr11 21936064 21936252 -126847220 + L1ME LINE L1 5577 5772 -349 251 268 125 27 chr11 21936473 21936585 -126846887 - MIR SINE MIR -2 260 138 250 277 64 21 chr11 21938510 21938604 -126844868 - MER5A DNA MER1_type -45 144 47 2085 205 121 11 chr11 21940058 21940531 -126842941 - MLT1F1 LTR MaLR -42 525 1 414 39 0 0 chr11 21940752 21940804 -126842668 + (TG)n Simple_repeat Simple_repeat 1 52 0 8669 214 16 8 chr11 21940919 21943758 -126839714 - L1PA16 LINE L1 -6 6160 3304 881 201 12 18 chr11 21943764 21943933 -126839539 - MER20 DNA MER1_type 0 219 52 335 122 0 0 chr11 21943933 21943982 -126839490 - L1MA6 LINE L1 -108 6192 6144 339 180 16 0 chr11 21944020 21944081 -126839391 - MER20 DNA MER1_type -152 67 6 243 88 0 0 chr11 21944122 21944156 -126839316 + (TA)n Simple_repeat Simple_repeat 2 35 0 1829 135 0 0 chr11 21944587 21944853 -126838619 - AluSx SINE Alu -12 300 35 227 338 0 14 chr11 21946902 21946973 -126836499 - MIR SINE MIR -173 89 20 594 283 26 44 chr11 21947169 21947395 -126836077 + MIR SINE MIR 13 234 -28 216 343 0 0 chr11 21947431 21947504 -126835968 - MIR SINE MIR -127 135 63 223 313 219 10 chr11 21948032 21948128 -126835344 + MIR SINE MIR 32 147 -61 242 335 64 35 chr11 21949314 21949535 -126833937 + L2 LINE L2 2736 2959 -313 288 120 0 0 chr11 21949553 21949603 -126833869 + (TA)n Simple_repeat Simple_repeat 1 50 0 538 162 105 9 chr11 21949698 21949803 -126833669 - 5S rRNA rRNA -6 115 1 1262 290 50 40 chr11 21949809 21950327 -126833145 + L2 LINE L2 2381 2903 -411 3595 23 0 5 chr11 21950338 21950771 -126832701 - L1PA3 LINE L1 0 6155 5725 26 30 0 0 chr11 21950810 21950843 -126832629 + AT_rich Low_complexity Low_complexity 1 33 0 769 318 120 0 chr11 21950877 21951201 -126832271 + L2 LINE L2 2942 3304 -9 334 311 154 39 chr11 21951352 21951657 -126831815 + L2 LINE L2 2455 2794 -520 1069 269 25 45 chr11 21952981 21953379 -126830093 + L2 LINE L2 2924 3313 0 235 360 52 15 chr11 21953381 21953517 -126829955 - MIR SINE MIR -109 153 13 443 299 60 50 chr11 21953777 21953978 -126829494 - MIR SINE MIR -40 222 20 211 179 71 71 chr11 21954170 21954226 -126829246 + MIR SINE MIR 66 121 -141 280 245 78 0 chr11 21955072 21955164 -126828308 - MIR SINE MIR -63 145 54 2163 253 59 8 chr11 21955488 21956148 -126827324 - L1ME3A LINE L1 -181 5989 5296 269 50 0 25 chr11 21956249 21956289 -126827183 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2531 263 157 102 chr11 21956292 21957554 -126825918 - HAL1 LINE L1 -185 2322 765 543 202 101 31 chr11 21957554 21957683 -126825789 - AluJb SINE Alu -25 287 150 2531 263 157 102 chr11 21957683 21958491 -126824981 - HAL1 LINE L1 -1742 765 3 210 379 32 41 chr11 21959066 21959285 -126824187 + L3 LINE CR1 607 823 -754 559 330 16 47 chr11 21959970 21960228 -126823244 - MIR SINE MIR -12 250 1 261 209 0 0 chr11 21960276 21960343 -126823129 + (TA)n Simple_repeat Simple_repeat 1 67 0 325 183 84 0 chr11 21963257 21963328 -126820144 - L1ME4a LINE L1 -16 6105 6029 22 0 0 0 chr11 21963485 21963507 -126819965 + AT_rich Low_complexity Low_complexity 1 22 0 1050 207 115 72 chr11 21963569 21963917 -126819555 + MLT1A1 LTR MaLR 1 363 -2 37 23 0 0 chr11 21963922 21963966 -126819506 + AT_rich Low_complexity Low_complexity 1 44 0 211 372 0 12 chr11 21965331 21965417 -126818055 + MIR3 SINE MIR 83 167 -41 771 286 128 8 chr11 21965432 21965666 -126817806 - MIR SINE MIR 0 262 1 233 346 91 35 chr11 21966054 21966308 -126817164 - L3 LINE CR1 -7 1570 1303 391 300 65 35 chr11 21966339 21966509 -126816963 - L3 LINE CR1 -742 835 661 377 324 126 0 chr11 21967654 21967836 -126815636 + MIR SINE MIR 29 233 -29 516 229 35 28 chr11 21969243 21969387 -126814085 - MLT1K LTR MaLR -23 565 421 12107 170 76 4 chr11 21969605 21971892 -126811580 - L1PBa LINE L1 -4412 2451 1 291 265 0 0 chr11 21972223 21972291 -126811181 - MER58B DNA MER1_type -16 325 258 2394 93 0 3 chr11 21972395 21972707 -126810765 + AluY SINE Alu 1 311 0 1007 98 0 0 chr11 21972870 21973003 -126810469 - AluSq/x SINE Alu -180 133 1 258 81 0 0 chr11 21973006 21973043 -126810429 + (TTG)n Simple_repeat Simple_repeat 3 39 0 9481 209 34 17 chr11 21973043 21975557 -126807915 - L1 LINE L1 -1760 4386 1843 1502 222 47 33 chr11 21975839 21976263 -126807209 - L1ME2 LINE L1 -10 6154 5725 291 137 0 39 chr11 21976379 21976430 -126807042 - MLT1K LTR MaLR -531 57 9 242 305 137 0 chr11 21977112 21977207 -126806265 - MIR3 SINE MIR -11 197 90 207 299 90 42 chr11 21979044 21979211 -126804261 - MIR SINE MIR 0 262 88 1874 145 97 0 chr11 21979329 21979680 -126803792 - L1MA4 LINE L1 -2 6298 5914 2070 147 0 0 chr11 21979769 21980075 -126803397 + AluJb SINE Alu 1 306 -6 348 323 75 38 chr11 21980683 21980869 -126802603 - MER117 DNA MER1_type -1 196 4 1919 22 0 0 chr11 21981161 21981390 -126802082 - L1PA3 LINE L1 -851 5295 5067 7065 34 0 0 chr11 21981391 21982227 -126801245 + L1PA3 LINE L1 5317 6152 -3 33 0 0 0 chr11 21982227 21982260 -126801212 + AT_rich Low_complexity Low_complexity 1 33 0 237 228 0 0 chr11 21982519 21982576 -126800896 + GA-rich Low_complexity Low_complexity 2 58 0 28 79 0 0 chr11 21982591 21982654 -126800818 + AT_rich Low_complexity Low_complexity 1 63 0 240 217 33 0 chr11 21983034 21983094 -126800378 + GA-rich Low_complexity Low_complexity 2 63 0 418 311 76 42 chr11 21983630 21983868 -126799604 + MIR SINE MIR 3 248 -14 636 225 17 29 chr11 21984188 21984361 -126799111 - MER96B DNA MER1_type? -5 412 242 430 319 100 2 chr11 21984979 21985199 -126798273 - MIR SINE MIR 0 262 25 187 371 32 24 chr11 21986139 21986263 -126797209 - MIR SINE MIR -117 145 21 432 254 153 16 chr11 21989537 21989726 -126793746 - MIR SINE MIR -43 219 5 218 271 0 14 chr11 21989802 21989872 -126793600 + CT-rich Low_complexity Low_complexity 2 70 0 404 244 71 24 chr11 21990581 21990708 -126792764 - MIR SINE MIR -5 257 125 273 336 47 28 chr11 21990741 21990848 -126792624 - L2 LINE L2 -1 3271 3163 709 324 68 21 chr11 21991272 21991608 -126791864 + MLT1I LTR MaLR 44 395 -14 192 125 0 0 chr11 21992675 21992707 -126790765 + (TG)n Simple_repeat Simple_repeat 2 33 0 318 321 105 34 chr11 21992920 21993807 -126789665 + HAL1 LINE L1 9 1085 -1422 2046 207 17 67 chr11 21993823 21994302 -126789170 + L1M4c LINE L1 32 486 -5898 * 5367 207 37 46 chr11 21994297 21994729 -126788743 + L1M4c LINE L1 1248 1682 -4700 243 0 0 0 chr11 21994729 21994756 -126788716 + (TG)n Simple_repeat Simple_repeat 2 28 0 5367 207 37 46 chr11 21994756 21995718 -126787754 + L1M4c LINE L1 1682 2651 -3731 2129 94 11 17 chr11 21995718 21996005 -126787467 + AluSc SINE Alu 3 287 -22 5367 207 37 46 chr11 21996005 21996970 -126786502 + L1M4c LINE L1 2651 3587 -2795 2141 133 0 0 chr11 21996970 21997279 -126786193 + AluSx SINE Alu 1 309 -3 5367 207 37 46 chr11 21997279 21997748 -126785724 + L1M4c LINE L1 3587 4059 -2323 259 77 0 0 chr11 21997748 21997787 -126785685 + L1M4c LINE L1 4793 4831 -1551 383 212 17 59 chr11 21997805 21997923 -126785549 + L1M4c LINE L1 4807 4919 -1463 1506 223 168 0 chr11 21998000 21998394 -126785078 + MLT1D LTR MaLR 46 505 0 473 220 11 44 chr11 21998472 21998654 -126784818 + HAL1 LINE L1 2240 2415 -92 236 245 10 122 chr11 21998932 21999030 -126784442 + L2 LINE L2 3186 3272 0 1895 287 25 33 chr11 21999344 21999957 -126783515 - MLT2E LTR ERVL 0 628 21 631 183 25 17 chr11 22000218 22000338 -126783134 + BC200 scRNA scRNA 1 121 -79 232 250 22 43 chr11 22002524 22002616 -126780856 + MIR SINE MIR 102 191 -71 596 278 39 78 chr11 22003804 22004135 -126779337 + L2 LINE L2 2996 3313 0 430 333 43 24 chr11 22004501 22004711 -126778761 + MIR SINE MIR 31 244 -18 542 343 28 12 chr11 22005101 22005355 -126778117 - MER90 LTR ERV1 0 614 357 10155 205 48 46 chr11 22005359 22006296 -126777176 - L1MA5 LINE L1 -7 6995 6061 2202 117 3 0 chr11 22006296 22006605 -126776867 - AluSp SINE Alu -2 311 2 10155 205 48 46 chr11 22006605 22008595 -126774877 - L1MA5 LINE L1 -941 6061 4076 2044 143 7 0 chr11 22008595 22008902 -126774570 - AluSc SINE Alu 0 309 1 10155 205 48 46 chr11 22008902 22009918 -126773554 - L1MA5 LINE L1 -2926 4076 3063 2224 103 3 0 chr11 22009918 22010208 -126773264 - AluSp SINE Alu -22 291 1 10155 205 48 46 chr11 22010208 22010808 -126772664 - L1MA5 LINE L1 -3939 3063 2414 186 71 0 0 chr11 22010808 22010836 -126772636 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 10155 205 48 46 chr11 22010836 22011360 -126772112 - L1MA5 LINE L1 -4588 2414 1892 267 282 88 39 chr11 22013229 22013410 -126770062 - L2 LINE L2 -1280 2034 1845 468 0 0 0 chr11 22013880 22013932 -126769540 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 71 0 0 chr11 22014239 22014281 -126769191 + AT_rich Low_complexity Low_complexity 1 42 0 213 324 0 0 chr11 22015151 22015225 -126768247 - L2 LINE L2 0 3313 3240 198 0 0 0 chr11 22015595 22015617 -126767855 + (T)n Simple_repeat Simple_repeat 1 22 0 1519 194 45 45 chr11 22015636 22016032 -126767440 - MSTD LTR MaLR 0 396 1 1498 114 155 42 chr11 22016269 22016533 -126766939 + AluSx SINE Alu 14 307 -5 240 251 72 24 chr11 22016542 22016709 -126766763 - L1ME4a LINE L1 0 6121 5947 348 298 136 25 chr11 22016967 22017165 -126766307 - L1ME4a LINE L1 -439 5682 5463 1296 184 36 0 chr11 22017240 22017517 -126765955 - L1MA1 LINE L1 -1 6301 6015 12728 152 74 35 chr11 22017517 22017965 -126765507 - L1M1 LINE L1 -4102 3463 3034 2132 104 9 35 chr11 22017965 22018282 -126765190 - AluSp SINE Alu -4 309 1 12728 152 74 35 chr11 22018282 22020944 -126762528 - L1M1 LINE L1 -4531 3034 13 28 0 0 0 chr11 22021097 22021125 -126762347 + AT_rich Low_complexity Low_complexity 1 28 0 535 256 19 0 chr11 22021200 22021217 -126762255 - L1MA10 LINE L1 -3 6331 6315 2343 257 50 29 chr11 22021217 22022662 -126760810 - L1ME1 LINE L1 -12 6223 4751 2462 55 10 0 chr11 22023558 22023866 -126759606 + AluY SINE Alu 1 311 0 23 0 0 0 chr11 22024269 22024292 -126759180 + AT_rich Low_complexity Low_complexity 1 23 0 500 242 54 13 chr11 22024908 22025057 -126758415 - L1ME1 LINE L1 -6228 168 14 * 1290 284 58 13 chr11 22025030 22025717 -126757755 - L1MDa LINE L1 -2688 3527 2810 1269 233 39 102 chr11 22025749 22026567 -126756905 - L1MDa LINE L1 -3490 2916 2185 4290 12 0 20 chr11 22026567 22027075 -126756397 - L1PA2 LINE L1 0 6155 5658 1269 233 39 102 chr11 22027075 22027243 -126756229 - L1MDa LINE L1 -4221 2185 2008 1587 216 36 31 chr11 22027248 22027605 -126755867 - MLT1A2 LTR MaLR -15 359 1 561 294 78 10 chr11 22027606 22027905 -126755567 - L1MDa LINE L1 -4522 1884 1651 243 125 0 0 chr11 22027946 22027986 -126755486 + (T)n Simple_repeat Simple_repeat 1 40 0 1638 182 6 46 chr11 22028119 22028443 -126755029 - AluJo SINE Alu 0 312 2 246 267 9 88 chr11 22028448 22028665 -126754807 - L1MDa LINE L1 -4910 1498 1299 1932 107 3 27 chr11 22028687 22028985 -126754487 - AluSx SINE Alu -2 310 20 234 283 118 13 chr11 22029001 22029153 -126754319 - L1MDa LINE L1 -4987 1422 1255 243 253 27 0 chr11 22029236 22029311 -126754161 - L1MDa LINE L1 -6207 380 304 220 104 42 104 chr11 22029434 22029482 -126753990 - L2 LINE L2 -3 3310 3266 306 327 151 48 chr11 22030056 22031023 -126752449 - L2 LINE L2 -630 2684 1618 1213 262 33 24 chr11 22031037 22031460 -126752012 + L1ME4a LINE L1 5499 5925 -196 233 282 43 52 chr11 22031822 22031946 -126751526 - MIR SINE MIR -66 142 13 188 246 14 58 chr11 22034085 22034154 -126749318 + MIR SINE MIR 28 93 -169 231 266 16 0 chr11 22034192 22034256 -126749216 - MER103 DNA DNA -81 85 21 830 282 31 19 chr11 22034392 22034651 -126748821 - MIR SINE MIR 0 262 1 435 351 96 49 chr11 22086753 22087285 -126696187 - L2 LINE L2 -18 3295 2743 24 0 0 0 chr11 22087885 22087909 -126695563 + AT_rich Low_complexity Low_complexity 1 24 0 453 316 84 5 chr11 22088443 22088633 -126694839 - Charlie8 DNA MER1_type -2207 210 6 1471 211 148 34 chr11 22089499 22089939 -126693533 - MLT1D LTR MaLR -7 498 9 1171 177 50 71 chr11 22090276 22090364 -126693108 + AluJo SINE Alu 36 124 -188 282 56 0 0 chr11 22090364 22090400 -126693072 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 1171 177 50 71 chr11 22090400 22090594 -126692878 + AluJo SINE Alu 124 312 0 234 330 43 0 chr11 22091108 22091223 -126692249 - MIR SINE MIR -27 235 116 23 0 0 0 chr11 22091971 22091994 -126691478 + AT_rich Low_complexity Low_complexity 1 23 0 368 316 17 22 chr11 22092952 22093119 -126690353 + MIR SINE MIR 13 180 -28 770 222 30 6 chr11 22093139 22093306 -126690166 + L1PA16 LINE L1 5961 6131 -35 4185 196 33 32 chr11 22094028 22095005 -126688467 + L1MA9 LINE L1 5297 6274 -38 23 33 0 0 chr11 22095573 22095603 -126687869 + AT_rich Low_complexity Low_complexity 1 30 0 193 273 101 50 chr11 22095663 22095715 -126687757 - L2 LINE L2 -15 3298 3250 1450 110 97 0 chr11 22095715 22095952 -126687520 + L1PA13 LINE L1 5899 6158 -5 193 273 101 50 chr11 22095952 22095998 -126687474 - L2 LINE L2 -63 3250 3195 271 297 0 11 chr11 22096979 22097070 -126686402 + (TTCA)n Simple_repeat Simple_repeat 1 90 0 423 296 29 48 chr11 22097189 22097395 -126686077 - MIR SINE MIR -10 252 51 387 264 126 43 chr11 22097564 22097880 -126685592 - LTR33A LTR ERVL -11 512 127 1682 194 31 25 chr11 22098228 22098588 -126684884 + MLT1A1 LTR MaLR 1 362 -3 771 183 35 0 chr11 22100109 22100251 -126683221 + FRAM SINE Alu 17 163 -13 894 341 68 11 chr11 22100583 22100952 -126682520 - L2 LINE L2 -1 3312 2923 346 331 12 6 chr11 22100999 22101168 -126682304 + L1M4 LINE L1 2653 2822 -3324 2184 116 0 0 chr11 22101204 22101498 -126681974 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr11 22101540 22101561 -126681911 + AT_rich Low_complexity Low_complexity 1 21 0 2102 136 49 9 chr11 22101675 22102020 -126681452 + THE1B LTR MaLR 1 359 -5 9950 112 31 43 chr11 22102029 22103629 -126679843 + THE1B-int LTR MaLR 1 1580 0 2243 132 28 11 chr11 22103630 22103987 -126679485 + THE1B LTR MaLR 2 364 0 500 291 77 64 chr11 22104001 22104327 -126679145 + L1PB2 LINE L1 3067 3396 -2750 6359 181 14 9 chr11 22104412 22106985 -126676487 + L1PB2 LINE L1 3516 6149 -2 454 324 34 8 chr11 22107005 22107243 -126676229 + L1M4 LINE L1 3871 4114 -2032 2901 50 14 0 chr11 22107244 22107608 -126675864 - L1PA3 LINE L1 0 6155 5787 13289 48 7 3 chr11 22107708 22109818 -126673654 - L1PA5 LINE L1 -329 5825 3706 235 277 84 0 chr11 22109966 22110085 -126673387 - L1M4 LINE L1 -3313 2833 2705 567 265 77 18 chr11 22110265 22110435 -126673037 - MER20 DNA MER1_type -39 180 1 396 277 31 8 chr11 22111125 22111255 -126672217 - MER117 DNA MER1_type -29 168 36 1778 166 0 7 chr11 22114315 22114598 -126668874 + AluJb SINE Alu 1 281 -31 286 211 26 0 chr11 22114602 22114678 -126668794 + (TA)n Simple_repeat Simple_repeat 2 79 0 1116 270 87 23 chr11 22114722 22115371 -126668101 - L1ME3A LINE L1 -213 5949 5254 485 262 90 57 chr11 22115537 22116049 -126667423 - L1ME3A LINE L1 -1131 5015 4487 26 30 0 0 chr11 22116184 22116217 -126667255 + AT_rich Low_complexity Low_complexity 1 33 0 1261 195 100 0 chr11 22116280 22116521 -126666951 + AluJo SINE Alu 1 265 -47 2102 153 0 0 chr11 22116626 22116934 -126666538 - AluSx SINE Alu -4 308 1 6062 53 8 0 chr11 22117147 22117914 -126665558 + L1PA5 LINE L1 5381 6153 -1 507 247 49 138 chr11 22117939 22118278 -126665194 + L1M4 LINE L1 3718 4009 -2137 1875 122 0 46 chr11 22118278 22118582 -126664890 + AluSx SINE Alu 1 290 -22 507 247 49 138 chr11 22118582 22118692 -126664780 + L1M4 LINE L1 4009 4127 -2019 21 36 0 0 chr11 22118852 22118880 -126664592 + AT_rich Low_complexity Low_complexity 1 28 0 615 227 76 35 chr11 22119769 22119941 -126663531 + MER97c DNA MER1_type? 1 179 -911 2169 123 0 0 chr11 22120137 22120437 -126663035 - AluSg SINE Alu -10 300 1 183 303 103 71 chr11 22120740 22120895 -126662577 + MIR SINE MIR 48 207 -55 919 236 241 30 chr11 22122933 22123394 -126660078 + LTR50 LTR ERVL 43 600 -195 302 209 15 0 chr11 22123471 22123538 -126659934 + LTR50 LTR ERVL 710 777 -18 399 333 15 7 chr11 22123963 22124098 -126659374 + L2 LINE L2 2922 3057 -256 846 104 22 0 chr11 22126364 22126499 -126656973 - L1PA14 LINE L1 0 6161 6024 487 299 6 35 chr11 22126722 22126896 -126656576 + MER5B DNA MER1_type 1 169 -9 1163 305 109 41 chr11 22127369 22127577 -126655895 + L2 LINE L2 1699 1891 -1423 1345 245 51 74 chr11 22127577 22128129 -126655343 + MLT1F LTR MaLR 1 539 -3 1163 305 109 41 chr11 22128129 22128655 -126654817 + L2 LINE L2 1891 2483 -831 315 331 169 0 chr11 22128695 22128831 -126654641 + MER5A DNA MER1_type 31 189 0 196 279 0 116 chr11 22129225 22129311 -126654161 - L2 LINE L2 -3 3269 3194 239 391 51 70 chr11 22129808 22130064 -126653408 + L2 LINE L2 3007 3257 -15 396 204 23 0 chr11 22130317 22130405 -126653067 + L1MA9 LINE L1 6218 6307 -5 445 91 13 13 chr11 22130645 22130722 -126652750 + (TA)n Simple_repeat Simple_repeat 2 78 0 1999 149 0 3 chr11 22130806 22131107 -126652365 + AluSx SINE Alu 3 302 -10 267 245 53 21 chr11 22131208 22131302 -126652170 - L1ME LINE L1 -338 5783 5687 216 283 0 0 chr11 22131748 22131794 -126651678 + L2 LINE L2 3218 3263 -9 195 313 16 0 chr11 22131805 22131869 -126651603 + MIR SINE MIR 74 138 -124 212 320 105 26 chr11 22132213 22132366 -126651106 - L3 LINE CR1 -32 1545 1381 220 156 0 0 chr11 22132694 22132726 -126650746 + MER91B DNA MER1_type 30 61 -129 239 200 140 20 chr11 22132755 22132855 -126650617 - MER112 DNA MER1_type -43 217 106 810 294 12 20 chr11 22132895 22133140 -126650332 + MIR SINE MIR 1 243 -19 243 188 116 29 chr11 22133219 22133288 -126650184 - MER112 DNA MER1_type -185 75 1 200 297 5 108 chr11 22133783 22133968 -126649504 + MIR SINE MIR 49 214 -48 21 0 0 0 chr11 22134141 22134162 -126649310 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 22134511 22134539 -126648933 + AT_rich Low_complexity Low_complexity 1 28 0 848 251 54 34 chr11 22134646 22135154 -126648318 - MER76 LTR ERV -66 622 41 209 33 33 0 chr11 22136519 22136549 -126646923 + (TC)n Simple_repeat Simple_repeat 2 32 0 1045 179 0 0 chr11 22137287 22137455 -126646017 + FAM SINE Alu 2 169 -6 1838 244 86 41 chr11 22137488 22138118 -126645354 - MER76 LTR ERV -30 658 1 2299 254 47 32 chr11 22138411 22139032 -126644440 - MER21B LTR ERV1 -134 729 100 248 188 0 42 chr11 22139107 22139155 -126644317 - MER21B LTR ERV1 -778 85 40 281 352 0 0 chr11 22140737 22140842 -126642630 + MER103 DNA DNA 1 105 -61 426 20 0 0 chr11 22141791 22141842 -126641630 + (TA)n Simple_repeat Simple_repeat 2 52 0 1584 282 93 33 chr11 22141853 22142756 -126640716 + L2 LINE L2 2338 3313 0 25 0 0 0 chr11 22142813 22142838 -126640634 + AT_rich Low_complexity Low_complexity 1 25 0 224 288 25 59 chr11 22143038 22143156 -126640316 - MIR SINE MIR -86 176 63 329 331 35 29 chr11 22144718 22144890 -126638582 - MIR SINE MIR -34 228 56 382 338 31 6 chr11 22145095 22145255 -126638217 + MIR3 SINE MIR 38 201 -7 468 326 98 5 chr11 22145359 22145574 -126637898 - MIR SINE MIR -15 247 13 234 0 0 0 chr11 22145800 22145826 -126637646 + (ATATG)n Simple_repeat Simple_repeat 3 28 0 4909 205 42 53 chr11 22145877 22147054 -126636418 + L1MB8 LINE L1 3711 4899 -1279 1528 203 13 16 chr11 22147054 22147364 -126636108 - AluJo SINE Alu 0 312 4 4909 205 42 53 chr11 22147364 22147911 -126635561 + L1MB8 LINE L1 4899 5451 -727 1695 130 0 0 chr11 22147911 22148150 -126635322 + AluSx SINE Alu 58 296 -16 4909 205 42 53 chr11 22148150 22148920 -126634552 + L1MB8 LINE L1 5451 6172 -6 400 306 50 40 chr11 22149317 22149516 -126633956 - L3 LINE CR1 -141 1436 1236 282 239 65 43 chr11 22149566 22149658 -126633814 + MIR SINE MIR 80 173 -89 269 257 40 0 chr11 22150286 22150360 -126633112 - MIR SINE MIR -79 183 107 300 309 0 0 chr11 22150565 22150633 -126632839 + MIR SINE MIR 38 105 -103 2217 150 17 3 chr11 22150811 22151170 -126632302 + THE1B LTR MaLR 1 364 0 10752 107 9 29 chr11 22151171 22152782 -126630690 + THE1B-int LTR MaLR 2 1580 0 2400 124 6 6 chr11 22152782 22153146 -126630326 + THE1B LTR MaLR 1 364 0 2061 178 88 15 chr11 22153266 22153744 -126629728 + Charlie1b DNA MER1_type 11 523 0 233 241 92 23 chr11 22154508 22154595 -126628877 + MLT1H LTR MaLR 205 297 -252 663 249 165 8 chr11 22155742 22155979 -126627493 + ORSL DNA AcHobo 2 275 0 1175 228 24 61 chr11 22156548 22156926 -126626546 + MLT1A1 LTR MaLR 2 365 0 331 266 188 26 chr11 22156950 22157104 -126626368 + MER5A DNA MER1_type 9 187 -2 273 347 81 9 chr11 22158009 22158231 -126625241 + L1 LINE L1 3595 3832 -2314 338 312 54 18 chr11 22158691 22158967 -126624505 - L1ME3A LINE L1 -217 5953 5668 311 164 16 33 chr11 22158997 22159058 -126624414 + MER3 DNA MER1_type 1 60 -149 210 278 17 26 chr11 22159211 22159326 -126624146 + T-rich Low_complexity Low_complexity 2 115 0 293 323 44 75 chr11 22159886 22160248 -126623224 + MER31-int LTR ERV1 3677 4027 -909 233 246 33 0 chr11 22160984 22161045 -126622427 - MIR SINE MIR 0 262 200 2219 161 52 15 chr11 22161045 22161364 -126622108 + L1MA9 LINE L1 5825 6168 -144 240 59 0 0 chr11 22161364 22161398 -126622074 + (CA)n Simple_repeat Simple_repeat 1 34 0 2219 161 52 15 chr11 22161398 22161544 -126621928 + L1MA9 LINE L1 6168 6307 -5 369 242 11 0 chr11 22161694 22161789 -126621683 + MER69 DNA AcHobo 2430 2525 -1 473 276 31 24 chr11 22161792 22161919 -126621553 - MIR SINE MIR -129 133 6 243 314 92 65 chr11 22162107 22162260 -126621212 - MIR SINE MIR -95 167 11 226 297 127 8 chr11 22162346 22162464 -126621008 - MIR SINE MIR -60 202 71 36 62 0 0 chr11 22163457 22163521 -126619951 + AT_rich Low_complexity Low_complexity 1 64 0 543 267 83 107 chr11 22163715 22164388 -126619084 - L1ME3A LINE L1 -230 6009 5354 277 270 6 30 chr11 22164590 22164717 -126618755 - L1ME3A LINE L1 -1134 5081 4956 924 278 83 53 chr11 22164740 22165211 -126618261 - L2 LINE L2 0 3313 2829 209 182 23 0 chr11 22165269 22165313 -126618159 - L2 LINE L2 -582 2732 2688 973 319 48 23 chr11 22165324 22165719 -126617753 - MLT1I LTR MaLR 0 409 5 566 265 114 18 chr11 22165728 22166000 -126617472 - L2 LINE L2 -620 2694 2397 260 250 56 19 chr11 22166070 22166178 -126617294 + LTR33A LTR ERVL 411 522 -1 428 283 48 54 chr11 22166441 22166904 -126616568 - L1ME3A LINE L1 -1373 4842 4383 263 225 110 37 chr11 22166990 22167208 -126616264 - L1ME3A LINE L1 -4130 2266 2033 351 328 87 6 chr11 22167482 22167665 -126615807 + MLT1H1 LTR MaLR 1 198 -357 252 198 0 123 chr11 22167862 22167968 -126615504 + MLT1E3 LTR MaLR 528 620 -4 1780 138 55 0 chr11 22167976 22168303 -126615169 + L1MA9 LINE L1 5946 6290 -22 290 51 34 34 chr11 22168383 22168442 -126615030 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 273 30 30 60 chr11 22168483 22168550 -126614922 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 2450 18 0 0 chr11 22168550 22168832 -126614640 - L1PA2 LINE L1 -13 6142 5861 946 227 73 5 chr11 22168947 22169167 -126614305 - MLT1A1 LTR MaLR -1 364 130 1788 218 68 16 chr11 22169199 22169713 -126613759 - L1MD3 LINE L1 -16 7979 7439 209 284 81 0 chr11 22169963 22170037 -126613435 + MIR SINE MIR 70 149 -113 3127 185 30 3 chr11 22170278 22170901 -126612571 + L1PB4 LINE L1 5506 6145 -11 323 318 35 38 chr11 22170950 22171146 -126612326 - MIR SINE MIR -50 212 17 29 84 0 0 chr11 22171410 22171481 -126611991 + AT_rich Low_complexity Low_complexity 1 71 0 2127 106 0 44 chr11 22171599 22171919 -126611553 - AluSc SINE Alu -3 306 1 479 327 39 0 chr11 22172200 22172353 -126611119 - MIR SINE MIR -67 195 37 194 31 0 62 chr11 22172380 22172412 -126611060 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 1157 278 37 14 chr11 22172618 22172824 -126610648 - L1MD2 LINE L1 -10 6349 6130 207 0 0 0 chr11 22172824 22172847 -126610625 + (TG)n Simple_repeat Simple_repeat 2 24 0 1157 278 37 14 chr11 22172847 22172992 -126610480 - L1MD2 LINE L1 -229 6130 5990 204 301 121 0 chr11 22173325 22173408 -126610064 + MIR SINE MIR 59 151 -111 189 228 129 99 chr11 22173710 22173811 -126609661 - MIR SINE MIR -75 133 30 251 359 35 12 chr11 22173906 22174085 -126609387 + MIR3 SINE MIR 10 191 -67 343 274 14 27 chr11 22174184 22174330 -126609142 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 185 263 44 79 chr11 22174515 22174629 -126608843 - MIR3 SINE MIR -7 201 92 575 262 7 14 chr11 22175023 22175168 -126608304 - MER5B DNA MER1_type 0 178 35 23 0 0 0 chr11 22175188 22175211 -126608261 + AT_rich Low_complexity Low_complexity 1 23 0 192 286 20 0 chr11 22175211 22175260 -126608212 + MER5B DNA MER1_type 129 178 0 214 242 0 16 chr11 22175305 22175367 -126608105 + (CTAG)n Simple_repeat Simple_repeat 2 62 0 871 312 62 29 chr11 22175779 22176234 -126607238 - L2 LINE L2 -11 3302 2833 320 125 16 0 chr11 22176247 22176311 -126607161 + CT-rich Low_complexity Low_complexity 2 66 0 234 221 0 104 chr11 22176401 22176478 -126606994 - L1M3de LINE L1 -6163 490 422 199 370 94 0 chr11 22176478 22176605 -126606867 - MIR3 SINE MIR -60 148 10 26 74 0 0 chr11 22176805 22176859 -126606613 + AT_rich Low_complexity Low_complexity 1 54 0 239 330 11 32 chr11 22177452 22177546 -126605926 + MIR SINE MIR 20 111 -151 296 282 120 14 chr11 22177735 22177877 -126605595 + L1M4 LINE L1 4204 4360 -1786 23 0 0 0 chr11 22177878 22177901 -126605571 + AT_rich Low_complexity Low_complexity 1 23 0 42106 36 23 1 chr11 22177902 22183923 -126599549 - L1PA3 LINE L1 -1 6154 2 1084 254 43 59 chr11 22185221 22185662 -126597810 - L1ME2 LINE L1 -7 6157 5724 6350 196 41 59 chr11 22186423 22187615 -126595857 - L1MA9 LINE L1 -233 6079 4867 896 228 0 0 chr11 22187615 22187773 -126595699 - FRAM SINE Alu -8 158 1 6350 196 41 59 chr11 22187773 22189139 -126594333 - L1MA9 LINE L1 -1445 4867 3562 218 233 10 33 chr11 22189241 22189311 -126594161 + GA-rich Low_complexity Low_complexity 3 51 0 413 288 17 8 chr11 22189311 22189429 -126594043 + L2 LINE L2 3195 3313 0 316 313 70 0 chr11 22190326 22190441 -126593031 + L2 LINE L2 3191 3313 0 251 331 89 3 chr11 22190485 22190651 -126592821 - MIR SINE MIR -66 142 3 585 262 32 27 chr11 22190963 22191150 -126592322 + MER58A DNA MER1_type 37 224 0 816 233 0 6 chr11 22191302 22191465 -126592007 + FRAM SINE Alu 1 162 -14 240 323 132 37 chr11 22191541 22191626 -126591846 - MIR SINE MIR -17 245 170 2138 99 10 7 chr11 22191626 22191919 -126591553 - AluSx SINE Alu -18 294 1 240 323 132 37 chr11 22191919 22192022 -126591450 - MIR SINE MIR -92 170 39 456 314 97 17 chr11 22192151 22192538 -126590934 - LTR16A LTR ERVL -7 443 1 369 287 69 35 chr11 22192539 22192741 -126590731 - HERV16 LTR ERVL -1 4995 4787 258 375 40 23 chr11 22192781 22193080 -126590392 - ERVL LTR ERVL -531 5233 4930 340 383 122 0 chr11 22194260 22194456 -126589016 - HAL1b LINE L1 -819 529 310 7241 32 14 0 chr11 22194640 22195637 -126587835 + L1PA4 LINE L1 5142 6150 -5 225 0 0 0 chr11 22195644 22195669 -126587803 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 22 56 0 0 chr11 22196114 22196150 -126587322 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr11 22196286 22196316 -126587156 + AT_rich Low_complexity Low_complexity 1 30 0 4762 224 81 33 chr11 22196556 22197412 -126586060 + Charlie1a DNA MER1_type 1 951 -1810 2357 92 0 16 chr11 22197412 22197727 -126585745 + AluSg SINE Alu 1 310 0 4762 224 81 33 chr11 22197727 22198251 -126585221 + Charlie1a DNA MER1_type 951 1448 -7 594 292 84 8 chr11 22198774 22199154 -126584318 + L1ME4a LINE L1 5522 5930 -191 3463 248 81 27 chr11 22199611 22200656 -126582816 + L1MC1 LINE L1 393 1525 -5065 989 245 54 36 chr11 22200679 22201273 -126582199 + L1MC1 LINE L1 1631 3819 -2721 18451 104 10 3 chr11 22201415 22204924 -126578548 - L1PA7 LINE L1 -5 6149 2615 8487 112 5 13 chr11 22204926 22206235 -126577237 + L1PA7 LINE L1 1294 2591 -3555 264 230 59 67 chr11 22206394 22206529 -126576943 + L1MC1 LINE L1 4014 4147 -2393 2180 88 0 14 chr11 22206529 22206825 -126576647 + AluY SINE Alu 1 292 -19 234 0 0 0 chr11 22206843 22206869 -126576603 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 273 23 0 chr11 22206869 22206957 -126576515 - L1MC4 LINE L1 -1339 6703 6614 2446 264 94 12 chr11 22206957 22207907 -126575565 + L1MC1 LINE L1 4139 5166 -1374 1736 218 65 30 chr11 22207932 22208275 -126575197 + L1MC1 LINE L1 5420 5750 -886 327 25 0 0 chr11 22208275 22208315 -126575157 + (CA)n Simple_repeat Simple_repeat 2 41 0 1736 218 65 30 chr11 22208315 22208699 -126574773 + L1MC1 LINE L1 5750 6169 -467 198 0 0 0 chr11 22208699 22208721 -126574751 + (A)n Simple_repeat Simple_repeat 1 22 0 243 0 0 0 chr11 22209151 22209178 -126574294 + (A)n Simple_repeat Simple_repeat 1 27 0 1353 177 78 0 chr11 22209217 22209500 -126573972 + L1MC1 LINE L1 6421 6725 -2 211 360 60 0 chr11 22209762 22209862 -126573610 + MIR SINE MIR 152 257 -5 529 306 46 6 chr11 22209882 22210055 -126573417 - MIR SINE MIR -71 191 12 1062 222 114 43 chr11 22210555 22210924 -126572548 + MSTD LTR MaLR 1 395 -1 2249 251 79 38 chr11 22211453 22212006 -126571466 - L1ME1 LINE L1 -5 6161 5552 2402 91 0 3 chr11 22212006 22212315 -126571157 + AluY SINE Alu 2 309 -2 2249 251 79 38 chr11 22212315 22212736 -126570736 - L1ME1 LINE L1 -614 5552 5150 232 256 23 0 chr11 22213152 22213238 -126570234 + CT-rich Low_complexity Low_complexity 3 90 0 191 414 29 10 chr11 22213247 22213351 -126570121 - L2 LINE L2 -1 3312 3207 231 349 15 38 chr11 22215043 22215175 -126568297 - LTR67 LTR ERVL -37 520 392 216 178 44 0 chr11 22215469 22215514 -126567958 - MIR SINE MIR -179 83 37 200 258 76 30 chr11 22215808 22215874 -126567598 + L3 LINE CR1 1507 1575 -2 214 337 48 24 chr11 22216586 22216669 -126566803 - MIR SINE MIR -107 101 17 914 200 55 0 chr11 22216688 22216853 -126566619 - MER5A DNA MER1_type -15 174 1 280 208 269 23 chr11 22216982 22217112 -126566360 + Charlie8 DNA MER1_type 70 231 -2186 228 231 115 39 chr11 22217206 22217284 -126566188 - MIR SINE MIR -12 250 167 433 158 17 0 chr11 22217315 22217435 -126566037 + (TA)n Simple_repeat Simple_repeat 1 122 0 835 285 45 18 chr11 22217587 22217808 -126565664 - MIR SINE MIR -35 227 1 237 384 24 24 chr11 22217843 22217968 -126565504 - MIR3 SINE MIR -48 160 36 558 237 59 18 chr11 22218090 22218259 -126565213 + MER5B DNA MER1_type 3 178 0 302 393 16 8 chr11 22218898 22219020 -126564452 + L2 LINE L2 3104 3226 -46 245 33 0 0 chr11 22219455 22219509 -126563963 - AluSp/q SINE Alu 0 308 255 630 282 160 51 chr11 22219675 22219709 -126563763 + MLT1H LTR MaLR 110 139 -410 2048 205 75 16 chr11 22219709 22220148 -126563324 - MLT1C LTR MaLR 0 467 3 630 282 160 51 chr11 22220148 22220507 -126562965 + MLT1H LTR MaLR 139 546 -3 766 295 15 75 chr11 22220961 22221361 -126562111 - L3 LINE CR1 -1 1576 1201 2138 116 10 0 chr11 22222063 22222364 -126561108 + AluSc SINE Alu 1 304 -5 254 363 25 0 chr11 22222405 22222485 -126560987 + MIR SINE MIR 49 130 -132 27 62 0 0 chr11 22222485 22222533 -126560939 + AT_rich Low_complexity Low_complexity 1 48 0 214 358 161 7 chr11 22222819 22222956 -126560516 + MIR3 SINE MIR 39 196 -12 627 282 68 19 chr11 22223521 22223727 -126559745 - MIR SINE MIR -14 248 33 1737 163 0 17 chr11 22223805 22224115 -126559357 + AluSx SINE Alu 1 305 0 2195 160 13 21 chr11 22224279 22224352 -126559120 + MSTA LTR MaLR 1 73 -355 2211 149 6 8 chr11 22224352 22224708 -126558764 - THE1A LTR MaLR 0 355 1 2195 160 13 21 chr11 22224708 22225008 -126558464 + MSTA LTR MaLR 73 371 -57 1998 47 12 0 chr11 22225015 22225268 -126558204 - L1PA5 LINE L1 0 6154 5899 2384 38 10 0 chr11 22225268 22225559 -126557913 + L1PA5 LINE L1 5592 5885 -270 468 133 3 13 chr11 22225559 22225641 -126557831 + MSTA LTR MaLR 280 428 0 * 1398 217 114 37 chr11 22225641 22226062 -126557410 + MLT1D LTR MaLR 50 503 -2 243 224 17 0 chr11 22226628 22226686 -126556786 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 266 266 112 21 chr11 22227098 22227241 -126556231 + L1ME LINE L1 5326 5481 -640 282 236 112 28 chr11 22227325 22227503 -126555969 + L1ME LINE L1 5641 5833 -288 22 35 0 0 chr11 22227694 22227723 -126555749 + AT_rich Low_complexity Low_complexity 1 29 0 2106 131 3 0 chr11 22228459 22228764 -126554708 - AluSx SINE Alu -5 307 2 1405 245 54 28 chr11 22230900 22231366 -126552106 - L1ME1 LINE L1 -9 6157 5680 2068 182 9 36 chr11 22231811 22231868 -126551604 + L1MB5 LINE L1 5740 5797 -377 1961 189 76 2 chr11 22231868 22232264 -126551208 + MSTB LTR MaLR 2 426 0 2068 182 9 36 chr11 22232264 22232645 -126550827 + L1MB5 LINE L1 5797 6166 -8 236 333 0 0 chr11 22233084 22233153 -126550319 + MIR SINE MIR 183 251 -11 389 301 133 12 chr11 22234294 22234467 -126549005 - MIR SINE MIR -21 241 48 387 41 0 0 chr11 22234645 22234694 -126548778 + (TG)n Simple_repeat Simple_repeat 2 50 0 3784 169 44 22 chr11 22234705 22234832 -126548640 - L1MA9 LINE L1 -5 6195 6072 348 43 0 0 chr11 22234832 22234878 -126548594 + (TG)n Simple_repeat Simple_repeat 2 47 0 3784 169 44 22 chr11 22234878 22235263 -126548209 - L1MA9 LINE L1 -128 6072 5656 306 0 0 0 chr11 22235263 22235297 -126548175 + (CA)n Simple_repeat Simple_repeat 2 35 0 3784 169 44 22 chr11 22235297 22235598 -126547874 - L1MA9 LINE L1 -544 5656 5363 512 136 123 0 chr11 22235599 22235680 -126547792 - AluSg SINE Alu -30 280 190 1020 91 0 8 chr11 22235681 22235813 -126547659 - AluSg SINE Alu -179 131 1 4585 198 31 16 chr11 22235814 22236363 -126547109 - L1MA9 LINE L1 -743 5291 4752 2658 128 9 42 chr11 22236363 22236810 -126546662 + MSTB1 LTR MaLR 1 432 0 4585 198 31 16 chr11 22236810 22237475 -126545997 - L1MA9 LINE L1 -1282 4752 4144 3549 271 31 48 chr11 22237500 22239604 -126543868 - L1MA9 LINE L1 -4289 1745 11 343 277 102 78 chr11 22239613 22239869 -126543603 + L2 LINE L2 3048 3309 -4 534 302 13 13 chr11 22240063 22240212 -126543260 - MIR SINE MIR -86 176 28 200 118 29 0 chr11 22240358 22240392 -126543080 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 978 110 7 0 chr11 22241164 22241300 -126542172 - MER1B DNA MER1_type 0 339 203 425 263 39 58 chr11 22241732 22241991 -126541481 + MIR SINE MIR 13 261 -1 1442 61 11 0 chr11 22242637 22242818 -126540654 + L1PA5 LINE L1 5964 6146 -8 324 0 0 0 chr11 22243101 22243137 -126540335 + (CA)n Simple_repeat Simple_repeat 2 37 0 230 341 78 31 chr11 22243338 22243467 -126540005 + MIR SINE MIR 86 220 -42 21 0 0 0 chr11 22243666 22243687 -126539785 + AT_rich Low_complexity Low_complexity 1 21 0 4040 38 4 2 chr11 22244358 22244861 -126538611 + L1PA4 LINE L1 5652 6155 0 461 328 59 16 chr11 22245285 22245471 -126538001 - MIR SINE MIR -35 227 34 1981 303 118 38 chr11 22246159 22246845 -126536627 + L2 LINE L2 1927 2557 -756 1536 201 14 3 chr11 22246845 22247134 -126536338 - AluJo SINE Alu -20 292 1 1981 303 118 38 chr11 22247134 22247722 -126535750 + L2 LINE L2 2557 3313 0 891 225 42 50 chr11 22248121 22248366 -126535106 - MLT1A2 LTR MaLR -5 369 125 2503 154 49 5 chr11 22248366 22248776 -126534696 - MSTA LTR MaLR 0 428 1 891 225 42 50 chr11 22248776 22248792 -126534680 - MLT1A2 LTR MaLR -249 125 110 924 150 12 6 chr11 22248793 22248953 -126534519 - MSTA-int LTR MaLR -16 1635 1475 6478 184 11 18 chr11 22248961 22249099 -126534373 - MSTA-int LTR MaLR -466 1185 1047 1836 157 122 40 chr11 22249099 22249494 -126533978 - MSTA LTR MaLR 0 428 2 6478 184 11 18 chr11 22249494 22250175 -126533297 - MSTA-int LTR MaLR -604 1047 375 2235 123 0 7 chr11 22250175 22250485 -126532987 + AluSc SINE Alu 1 308 -1 6478 184 11 18 chr11 22250485 22250858 -126532614 - MSTA-int LTR MaLR -1276 375 1 2481 167 21 0 chr11 22250863 22251282 -126532190 - MSTA LTR MaLR 0 428 1 473 204 133 0 chr11 22251282 22251395 -126532077 - MLT1A2 LTR MaLR -244 130 3 305 309 65 8 chr11 22251779 22251902 -126531570 + L2 LINE L2 3182 3311 -2 249 277 0 0 chr11 22252228 22252293 -126531179 - MIR SINE MIR -18 244 180 487 345 78 35 chr11 22253282 22253717 -126529755 + L3b LINE CR1 1117 1570 -13 1337 214 108 52 chr11 22254294 22254349 -126529123 - MER63B DNA MER1_type -633 429 379 2566 58 0 3 chr11 22254349 22254657 -126528815 - AluY SINE Alu -3 308 2 1337 214 108 52 chr11 22254657 22255007 -126528465 - MER63B DNA MER1_type -683 379 1 242 278 0 31 chr11 22256417 22256514 -126526958 + GA-rich Low_complexity Low_complexity 3 96 0 236 245 0 0 chr11 22256623 22256676 -126526796 + GA-rich Low_complexity Low_complexity 2 54 0 347 319 123 54 chr11 22256686 22257093 -126526379 + L2 LINE L2 2423 2857 -457 24 0 0 0 chr11 22257433 22257457 -126526015 + AT_rich Low_complexity Low_complexity 1 24 0 340 152 76 0 chr11 22258632 22258711 -126524761 - L1PA15 LINE L1 0 6165 6081 489 152 20 10 chr11 22258796 22258895 -126524577 - MER53 DNA DNA -68 121 22 397 146 24 12 chr11 22258822 22258904 -126524568 + MER53 DNA DNA 105 187 -2 * 23 54 0 0 chr11 22259203 22259240 -126524232 + AT_rich Low_complexity Low_complexity 1 37 0 427 339 41 6 chr11 22259316 22259487 -126523985 - MIR SINE MIR -57 205 29 391 286 29 9 chr11 22260448 22260553 -126522919 - L2 LINE L2 -44 3228 3122 183 179 0 0 chr11 22261484 22261512 -126521960 + L2 LINE L2 1784 1811 -1503 2256 89 6 0 chr11 22261741 22262065 -126521407 - pTR5 LTR ERV1 -2047 391 66 269 237 41 21 chr11 22262065 22262162 -126521310 - LTR30 LTR ERV1 -80 642 544 2379 153 94 68 chr11 22262162 22262986 -126520486 - pTR5 LTR ERV1 -413 2025 743 251 366 122 17 chr11 22262989 22263284 -126520188 - L2 LINE L2 -1880 1434 1109 7074 193 28 4 chr11 22263571 22265885 -126517587 - L1PA15 LINE L1 0 6816 4441 2508 125 11 3 chr11 22265885 22266246 -126517226 - THE1B LTR MaLR 0 364 1 7074 193 28 4 chr11 22266246 22266346 -126517126 - L1PA15 LINE L1 -2375 4441 4345 4002 243 35 34 chr11 22266346 22266526 -126516946 - L1PA15 LINE L1 -3402 3395 3217 1672 91 18 0 chr11 22266526 22266746 -126516726 + AluY SINE Alu 85 308 -3 4002 243 35 34 chr11 22266746 22267183 -126516289 - L1PA15 LINE L1 -3580 3217 2782 1630 190 14 7 chr11 22267183 22267462 -126516010 + AluSx SINE Alu 1 281 -31 4002 243 35 34 chr11 22267462 22268944 -126514528 - L1PA15 LINE L1 -4015 2782 1285 314 342 25 77 chr11 22269047 22269243 -126514229 - L1PA15 LINE L1 -6073 714 529 2213 124 0 52 chr11 22269243 22269605 -126513867 - THE1C LTR MaLR -30 345 3 7117 141 13 5 chr11 22269605 22270693 -126512779 - THE1C-int LTR MaLR -1 1579 483 294 95 0 0 chr11 22270693 22270735 -126512737 + (T)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr11 22270877 22270897 -126512575 + (T)n Simple_repeat Simple_repeat 1 20 0 466 304 69 16 chr11 22271110 22271357 -126512115 + L1ME LINE L1 5555 5814 -307 2193 116 10 7 chr11 22271732 22272035 -126511437 + AluSx SINE Alu 1 304 -8 1140 286 61 23 chr11 22272377 22272719 -126510753 + L1M4b LINE L1 96 450 -6409 1057 272 47 3 chr11 22272720 22273058 -126510414 + L1M4b LINE L1 1036 1388 -5471 1061 297 72 41 chr11 22273062 22273586 -126509886 + L1M4b LINE L1 1434 1995 -4964 1417 208 7 44 chr11 22273586 22273884 -126509588 + AluJo SINE Alu 1 287 -25 1061 297 72 41 chr11 22273884 22274207 -126509265 + L1M4b LINE L1 1995 2307 -4652 1487 105 0 0 chr11 22274208 22274399 -126509073 + AluSg SINE Alu 1 191 -119 556 90 0 56 chr11 22274399 22274488 -126508984 + Alu SINE Alu 224 300 -10 189 0 0 0 chr11 22274624 22274645 -126508827 + (A)n Simple_repeat Simple_repeat 1 21 0 237 270 56 107 chr11 22274650 22274920 -126508552 + L1M4b LINE L1 2445 2700 -4438 39 0 0 0 chr11 22275064 22275103 -126508369 + AT_rich Low_complexity Low_complexity 1 39 0 392 301 60 15 chr11 22275176 22275512 -126507960 + L1M4b LINE L1 2655 3005 -3954 * 702 288 48 46 chr11 22275502 22276048 -126507424 + L1M4b LINE L1 3782 4328 -2629 3345 230 69 8 chr11 22276070 22277058 -126506414 + L1M4b LINE L1 4511 5558 -1399 248 318 24 12 chr11 22277272 22277357 -126506115 - LTR67 LTR ERVL -470 87 2 52 41 0 0 chr11 22277507 22277580 -126505892 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr11 22277691 22277712 -126505760 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 22278502 22278524 -126504948 + AT_rich Low_complexity Low_complexity 1 22 0 261 196 0 0 chr11 22278563 22278614 -126504858 - L2 LINE L2 0 3313 3263 198 0 0 0 chr11 22278703 22278725 -126504747 + (TG)n Simple_repeat Simple_repeat 2 23 0 579 108 0 0 chr11 22278756 22278849 -126504623 + (CA)n Simple_repeat Simple_repeat 1 93 0 772 328 64 25 chr11 22279015 22279685 -126503787 + L1M4 LINE L1 2123 2818 -3328 373 281 59 15 chr11 22279944 22280079 -126503393 + MER93a LTR ERV1 259 399 -3 347 335 60 62 chr11 22282322 22282395 -126501077 + MER93a-int LTR ERV1 152 224 -4423 2317 61 0 0 chr11 22282395 22282720 -126500752 + AluY SINE Alu 1 325 0 347 335 60 62 chr11 22282720 22283078 -126500394 + MER93a-int LTR ERV1 224 583 -4064 1042 303 30 81 chr11 22284140 22285482 -126497990 + MER57-int LTR ERV1 2093 6132 -1405 270 275 64 18 chr11 22286751 22286860 -126496612 + MER57-int LTR ERV1 7246 7359 -360 290 270 31 31 chr11 22286954 22287126 -126496346 + MER57-int LTR ERV1 6586 6667 -134 309 242 74 0 chr11 22287233 22287328 -126496144 + MER57-int LTR ERV1 7060 7161 -376 698 250 0 13 chr11 22287396 22287548 -126495924 + AluJo SINE Alu 6 155 -157 233 219 0 31 chr11 22287550 22287614 -126495858 - FRAM SINE Alu -65 101 40 577 205 0 0 chr11 22287623 22287735 -126495737 + FRAM SINE Alu 58 169 -7 652 278 45 38 chr11 22287812 22287871 -126495601 + MER93a LTR ERV1 131 188 -214 1497 208 100 8 chr11 22287871 22288232 -126495240 + MSTD LTR MaLR 1 394 -2 652 278 45 38 chr11 22288232 22288438 -126495034 + MER93a LTR ERV1 188 398 -4 438 313 85 41 chr11 22288439 22288803 -126494669 + L1M4 LINE L1 2813 3192 -2954 473 306 83 33 chr11 22289032 22289430 -126494042 + L1M4 LINE L1 3544 3961 -2185 588 288 27 27 chr11 22289443 22289627 -126493845 - L2 LINE L2 -519 2795 2612 387 0 0 0 chr11 22290447 22290490 -126492982 + (CA)n Simple_repeat Simple_repeat 1 43 0 192 362 43 36 chr11 22290764 22290902 -126492570 + L2 LINE L2 2916 3054 -218 579 185 193 0 chr11 22290939 22291058 -126492414 - AluSq/x SINE Alu -171 142 1 1387 212 37 76 chr11 22291059 22291441 -126492031 - MSTD LTR MaLR -29 367 1 599 239 0 15 chr11 22291441 22291573 -126491899 + MLT1C LTR MaLR 338 467 0 1835 153 0 7 chr11 22292161 22292449 -126491023 - AluSx SINE Alu -26 286 1 268 279 9 18 chr11 22292485 22292596 -126490876 + HAL1 LINE L1 1531 1640 -867 251 243 48 48 chr11 22293052 22293155 -126490317 + HAL1 LINE L1 2405 2507 0 222 190 17 17 chr11 22293361 22293419 -126490053 + A-rich Low_complexity Low_complexity 3 60 0 721 271 124 56 chr11 22293775 22294066 -126489406 + L1M4 LINE L1 2740 3010 -3136 2305 53 0 3 chr11 22294066 22294375 -126489097 + AluY SINE Alu 2 309 0 721 271 124 56 chr11 22294375 22294614 -126488858 + L1M4 LINE L1 3010 3307 -2839 22 56 0 0 chr11 22294866 22294902 -126488570 + AT_rich Low_complexity Low_complexity 1 36 0 216 97 0 0 chr11 22294955 22294986 -126488486 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 237 247 14 7 chr11 22295187 22295297 -126488175 + (TA)n Simple_repeat Simple_repeat 1 114 -33 894 248 126 16 chr11 22295297 22295607 -126487865 + MER2 DNA MER2_type 1 344 0 237 247 14 7 chr11 22295607 22295642 -126487830 + (TA)n Simple_repeat Simple_repeat 114 147 0 207 282 107 93 chr11 22296264 22296480 -126486992 + L2 LINE L2 3028 3246 -26 271 0 0 0 chr11 22296906 22296945 -126486527 + AluY SINE Alu 270 308 0 212 0 36 0 chr11 22297100 22297128 -126486344 + (TA)n Simple_repeat Simple_repeat 1 29 0 2234 234 80 11 chr11 22297747 22298359 -126485113 - MLT1E1 LTR MaLR 0 654 1 183 267 0 0 chr11 22298411 22298486 -126484986 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 241 296 62 0 chr11 22299108 22299189 -126484283 - MIR SINE MIR -114 148 63 339 319 115 0 chr11 22299595 22299777 -126483695 - MIR SINE MIR -8 254 52 365 342 65 16 chr11 22300801 22300985 -126482487 + MIR SINE MIR 14 206 -56 6083 181 40 9 chr11 22301034 22302481 -126480991 - L1MA5 LINE L1 0 6300 4774 2108 125 0 0 chr11 22302481 22302776 -126480696 - AluSx SINE Alu -17 295 1 6083 181 40 9 chr11 22302776 22303562 -126479910 - L1MA5 LINE L1 -1526 4774 4013 273 277 108 0 chr11 22305165 22305248 -126478224 - MIR SINE MIR -4 258 167 229 328 30 38 chr11 22305760 22305891 -126477581 + LTR16C LTR ERVL 362 491 0 1167 243 55 17 chr11 22306158 22306535 -126476937 - L1ME2 LINE L1 -44 6120 5735 398 175 58 19 chr11 22306788 22306891 -126476581 - MER103 DNA DNA -59 107 1 204 196 0 39 chr11 22306941 22306992 -126476480 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 21 57 0 0 chr11 22307312 22307347 -126476125 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 22311021 22311044 -126472428 + AT_rich Low_complexity Low_complexity 1 23 0 1801 200 103 77 chr11 22311668 22312367 -126471105 - MER50 LTR ERV1 -8 726 10 311 306 83 32 chr11 22312367 22312524 -126470948 + MIR SINE MIR 85 249 -13 414 281 74 0 chr11 22313341 22313462 -126470010 - MIR SINE MIR -49 213 84 598 196 105 0 chr11 22313679 22313726 -126469746 + AluJo SINE Alu 72 113 -199 195 42 0 0 chr11 22313726 22313750 -126469722 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 598 196 105 0 chr11 22313750 22313835 -126469637 + AluJo SINE Alu 113 218 -94 386 225 11 11 chr11 22313866 22313975 -126469497 + AluJ/FRAM SINE Alu 232 296 -6 22 0 0 0 chr11 22313983 22314005 -126469467 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr11 22314028 22314066 -126469406 + AT_rich Low_complexity Low_complexity 1 38 0 567 195 26 32 chr11 22314125 22314279 -126469193 - L1MA8 LINE L1 -10 6281 6129 13917 174 54 22 chr11 22314299 22316503 -126466969 - L1MA2 LINE L1 0 7723 5591 2042 133 0 3 chr11 22316503 22316796 -126466676 + AluSg SINE Alu 4 295 -15 13917 174 54 22 chr11 22316796 22318330 -126465142 - L1MA2 LINE L1 -2132 5591 4108 2007 144 133 13 chr11 22318330 22318712 -126464760 + MSTA LTR MaLR 1 428 0 13917 174 54 22 chr11 22318712 22320195 -126463277 - L1MA2 LINE L1 -3615 4108 2325 17574 64 12 7 chr11 22320196 22323400 -126460072 - L1PA6 LINE L1 0 6154 2973 4346 220 38 14 chr11 22323401 22324390 -126459082 - L1MA2 LINE L1 -6534 1031 19 11239 208 39 18 chr11 22324396 22327989 -126455483 - L1MA8 LINE L1 -156 6135 2459 488 321 30 18 chr11 22327989 22328157 -126455315 + L2 LINE L2 2754 2923 -391 239 89 44 0 chr11 22329982 22330027 -126453445 - L1PA4 LINE L1 -2 6153 6107 236 30 30 0 chr11 22331366 22331399 -126452073 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1977 136 58 3 chr11 22331935 22332265 -126451207 + MER7A DNA MER2_type 1 346 0 2286 111 23 9 chr11 22332353 22332703 -126450769 - THE1A LTR MaLR 0 355 1 11191 109 4 6 chr11 22332703 22334286 -126449186 - THE1A-int LTR MaLR 0 1580 1 358 125 0 0 chr11 22334286 22334334 -126449138 - THE1A LTR MaLR 0 355 308 1428 161 47 29 chr11 22334472 22334751 -126448721 + AluJb SINE Alu 27 310 -2 1821 165 64 14 chr11 22335941 22336298 -126447174 - THE1C LTR MaLR 0 375 1 264 326 153 7 chr11 22336402 22336546 -126446926 + MLT1K LTR MaLR 12 176 -412 2038 241 64 2 chr11 22336570 22337105 -126446367 - L1MB7 LINE L1 -25 6159 5592 983 269 36 34 chr11 22337109 22337466 -126446006 - L1M4 LINE L1 -6183 359 2 669 297 113 19 chr11 22337744 22338010 -126445462 + LTR16C LTR ERVL 198 488 -3 275 263 0 32 chr11 22338170 22338265 -126445207 + MLT1K LTR MaLR 495 586 -2 319 21 42 0 chr11 22338288 22338336 -126445136 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 279 274 45 78 chr11 22338395 22338574 -126444898 - MER110A LTR ERV1 -45 423 251 32 0 0 0 chr11 22338942 22338974 -126444498 + AT_rich Low_complexity Low_complexity 1 32 0 350 318 151 0 chr11 22339595 22339721 -126443751 + MIR SINE MIR 48 192 -70 796 210 90 57 chr11 22339734 22340221 -126443251 + LTR18A LTR ERVL 1 608 -6 1334 177 12 10 chr11 22340228 22340493 -126442979 + HERVL18 LTR ERVL 8 304 -5743 878 223 178 5 chr11 22340478 22340675 -126442797 + HERVL18 LTR ERVL 463 693 -5354 * 2978 156 4 2 chr11 22340675 22341144 -126442328 + HERVL18 LTR ERVL 1324 1793 -4254 2503 47 0 0 chr11 22341164 22341461 -126442011 - AluY SINE Alu -11 300 4 6331 151 7 12 chr11 22341488 22342900 -126440572 + HERVL18 LTR ERVL 2119 3579 -2468 1603 136 8 4 chr11 22342902 22343145 -126440327 + HERVL18 LTR ERVL 4394 4637 -1410 744 230 5 108 chr11 22343205 22343409 -126440063 + LTR18A LTR ERVL 1 183 -174 579 242 95 28 chr11 22343479 22343690 -126439782 + LTR18B LTR ERVL 383 607 -7 209 255 0 0 chr11 22344654 22344701 -126438771 - L2 LINE L2 0 3313 3267 475 320 48 35 chr11 22344730 22344958 -126438514 - MIR SINE MIR -30 232 2 4952 157 35 4 chr11 22345372 22346614 -126436858 - L1PA15 LINE L1 -2 6163 4897 180 0 0 0 chr11 22347326 22347346 -126436126 + (T)n Simple_repeat Simple_repeat 1 20 0 405 0 0 0 chr11 22347845 22347890 -126435582 + (CA)n Simple_repeat Simple_repeat 1 45 0 193 362 43 36 chr11 22348165 22348303 -126435169 + L2 LINE L2 2916 3054 -218 257 247 143 0 chr11 22348448 22348525 -126434947 - L2 LINE L2 -1 3312 3225 212 367 130 5 chr11 22348522 22348737 -126434735 - L2 LINE L2 -229 3084 2843 * 2136 27 0 15 chr11 22349096 22349357 -126434115 + L1PA4 LINE L1 5895 6151 -4 349 198 165 0 chr11 22349374 22349465 -126434007 + L1PB4 LINE L1 6051 6156 0 1053 30 0 8 chr11 22350373 22350506 -126432966 - L1PA5 LINE L1 0 6154 6023 256 280 27 0 chr11 22351377 22351452 -126432020 - MIR SINE MIR -115 147 71 2020 119 0 14 chr11 22351502 22351829 -126431643 + AluSc SINE Alu 1 323 0 970 265 136 10 chr11 22351918 22352447 -126431025 - MER69 DNA AcHobo -2 2524 1920 * 1408 275 39 32 chr11 22352442 22352875 -126430597 - MER69 DNA AcHobo -790 436 1 2280 236 67 21 chr11 22353424 22354048 -126429424 + MLT1E1 LTR MaLR 1 653 -1 1386 203 56 53 chr11 22354366 22354434 -126429038 + MLT2C1 LTR ERVL 1 67 -330 2042 124 59 31 chr11 22354434 22354788 -126428684 + THE1B LTR MaLR 1 364 0 1386 203 56 53 chr11 22354788 22355113 -126428359 + MLT2C1 LTR ERVL 67 395 -2 2380 120 11 0 chr11 22356203 22356552 -126426920 - THE1A LTR MaLR -2 353 1 292 134 16 47 chr11 22356683 22356810 -126426662 + (TA)n Simple_repeat Simple_repeat 2 124 0 1309 257 64 27 chr11 22356847 22357252 -126426220 - MLT1C LTR MaLR -47 420 1 6716 65 0 77 chr11 22357997 22359107 -126424365 - L1PA7 LINE L1 -1 6153 5070 14520 87 6 1 chr11 22359107 22361131 -126422341 + L1P LINE L1 2348 4381 -1765 2159 172 28 42 chr11 22361136 22361567 -126421905 - LTR3 LTR ERVK -3 429 5 4686 98 4 1 chr11 22361568 22362255 -126421217 + L1P LINE L1 4373 5061 -1085 275 275 13 64 chr11 22362333 22362489 -126420983 + MER61E LTR ERV1 98 234 -379 1089 183 20 0 chr11 22362509 22362706 -126420766 + MER61E LTR ERV1 341 541 -28 599 276 67 33 chr11 22363037 22363516 -126419956 + L1ME LINE L1 519 1013 -5057 1266 248 66 28 chr11 22363557 22363734 -126419738 - L1MC4 LINE L1 -321 7563 7394 1503 191 7 36 chr11 22363734 22364037 -126419435 - AluJb SINE Alu -12 300 7 1266 248 66 28 chr11 22364037 22364397 -126419075 - L1MC4 LINE L1 -490 7394 6882 2500 205 58 51 chr11 22364397 22365086 -126418386 - LTR8A LTR ERV1 0 727 34 2968 266 103 61 chr11 22365114 22367491 -126415981 - L1MC4a LINE L1 -743 5403 4406 227 224 0 0 chr11 22367536 22367594 -126415878 - L1 LINE L1 -1820 4326 4269 2261 94 0 10 chr11 22368479 22368786 -126414686 + AluY SINE Alu 1 304 -7 370 311 82 22 chr11 22369230 22369413 -126414059 + MIR SINE MIR 20 213 -49 323 311 98 52 chr11 22370016 22370209 -126413263 - MIR SINE MIR -58 204 3 3068 176 57 2 chr11 22372274 22372877 -126410595 - L1MD3 LINE L1 0 8413 6121 778 215 107 8 chr11 22372885 22373146 -126410326 - L1MD3 LINE L1 -1511 5053 4767 719 206 0 15 chr11 22373146 22373282 -126410190 + AluJo SINE Alu 1 134 -178 1868 244 70 20 chr11 22373290 22373836 -126409636 - L1MD3 LINE L1 -1787 4777 4193 1180 179 179 0 chr11 22373836 22374121 -126409351 - MER44D DNA MER2_type 0 609 4 1868 244 70 20 chr11 22374121 22374213 -126409259 - L1MD3 LINE L1 -2371 4193 4107 1744 221 104 10 chr11 22374207 22374506 -126408966 - L1MD3 LINE L1 -4598 1966 1697 * 186 103 0 0 chr11 22374506 22374535 -126408937 + (TG)n Simple_repeat Simple_repeat 2 30 0 1744 221 104 10 chr11 22374535 22374873 -126408599 - L1MD3 LINE L1 -4867 1697 1182 537 135 0 0 chr11 22374874 22374963 -126408509 + (TTCCC)n Simple_repeat Simple_repeat 4 92 0 2095 261 73 67 chr11 22375570 22376087 -126407385 + L1MEc LINE L1 252 765 -5450 2197 64 7 40 chr11 22376087 22376384 -126407088 + AluY SINE Alu 21 307 -4 2095 261 73 67 chr11 22376384 22376574 -126406898 + L1MEc LINE L1 765 952 -5263 2187 116 0 3 chr11 22376574 22376875 -126406597 + AluSx SINE Alu 1 300 -12 2095 261 73 67 chr11 22376875 22377328 -126406144 + L1MEc LINE L1 952 1371 -4844 933 314 19 14 chr11 22377813 22378179 -126405293 - L1MD3 LINE L1 -5674 371 4 23 0 0 0 chr11 22378305 22378328 -126405144 + AT_rich Low_complexity Low_complexity 1 23 0 1504 167 8 15 chr11 22378336 22378600 -126404872 - AluJo SINE Alu -23 289 28 2403 100 0 3 chr11 22379164 22379474 -126403998 - AluSc SINE Alu 0 309 1 200 273 0 0 chr11 22379541 22379585 -126403887 - MIR SINE MIR -108 154 111 3043 240 71 5 chr11 22381387 22382550 -126400922 - L1ME LINE L1 -689 5477 4247 962 329 89 36 chr11 22382777 22383443 -126400029 - L2 LINE L2 -339 2975 2275 282 260 115 77 chr11 22385302 22385510 -126397962 + MLT1L LTR MaLR 169 384 -231 2001 140 33 0 chr11 22385656 22385956 -126397516 - AluSg SINE Alu 0 310 1 2723 20 0 0 chr11 22385977 22386281 -126397191 - AluYa5 SINE Alu -7 304 1 5496 204 57 112 chr11 22387547 22388677 -126394795 + L1M1 LINE L1 597 1565 -6000 * 6458 36 1 0 chr11 22387894 22388677 -126394795 - L1PA4 LINE L1 -977 5169 4386 7492 33 0 1 chr11 22388677 22389693 -126393779 + L1PA4 LINE L1 5138 6152 -3 5496 204 57 112 chr11 22389693 22390611 -126392861 + L1M1 LINE L1 1565 2532 -5033 186 71 0 0 chr11 22390611 22390639 -126392833 + (TA)n Simple_repeat Simple_repeat 2 29 0 303 49 0 0 chr11 22390644 22390685 -126392787 + (GA)n Simple_repeat Simple_repeat 1 41 0 324 0 0 0 chr11 22391344 22391380 -126392092 + (TA)n Simple_repeat Simple_repeat 1 36 0 6616 196 36 90 chr11 22391401 22394000 -126389472 + L1M1 LINE L1 2531 5267 -2298 663 127 25 68 chr11 22394000 22394118 -126389354 + AluJb SINE Alu 4 116 -196 221 0 0 33 chr11 22394119 22394149 -126389323 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6616 196 36 90 chr11 22394149 22394956 -126388516 + L1M1 LINE L1 5266 5837 -1728 4012 115 37 5 chr11 22394956 22395600 -126387872 + L1MA3 LINE L1 5633 6297 -8 230 329 82 44 chr11 22395972 22396130 -126387342 - MER5B DNA MER1_type -14 164 1 308 298 93 13 chr11 22396131 22396282 -126387190 - L2 LINE L2 -546 2768 2606 285 313 44 6 chr11 22396320 22396502 -126386970 - L2 LINE L2 -411 2903 2715 198 0 0 0 chr11 22396726 22396748 -126386724 + (TA)n Simple_repeat Simple_repeat 2 23 0 3506 231 44 50 chr11 22396857 22397714 -126385758 + L1PA12 LINE L1 308 1159 -6422 14122 216 23 10 chr11 22397714 22400958 -126382514 + L1P LINE L1 1949 5233 -913 1173 153 91 18 chr11 22400944 22401218 -126382254 + L1 LINE L1 3220 3513 -2633 * 866 203 69 61 chr11 22401456 22401831 -126381641 + LTR49-int LTR ERV1 2058 4083 -2593 2055 119 3 17 chr11 22401841 22402143 -126381329 - AluSx SINE Alu -14 298 1 631 180 21 72 chr11 22402428 22402622 -126380850 + LTR49-int LTR ERV1 3547 3730 -2868 1270 212 72 64 chr11 22402701 22402862 -126380610 + LTR49-int LTR ERV1 2471 2629 -2307 1985 94 0 0 chr11 22402862 22403138 -126380334 + AluSg SINE Alu 38 313 0 1270 212 72 64 chr11 22403138 22403176 -126380296 + LTR49-int LTR ERV1 2629 2665 -2271 1497 180 20 36 chr11 22403176 22403482 -126379990 - AluJo SINE Alu -11 301 1 1270 212 72 64 chr11 22403482 22404598 -126378874 + LTR49-int LTR ERV1 2665 3631 -1305 1119 118 0 0 chr11 22404598 22404759 -126378713 - MLT2A2 LTR ERVL 0 453 293 390 240 50 0 chr11 22404764 22404864 -126378608 + LTR49-int LTR ERV1 4927 5031 -1300 395 208 0 0 chr11 22405323 22405429 -126378043 + (TA)n Simple_repeat Simple_repeat 2 107 0 241 196 22 43 chr11 22405439 22405531 -126377941 + L1MC4 LINE L1 6614 6703 -1339 258 353 140 7 chr11 22405925 22406075 -126377397 + MIR SINE MIR 87 256 -6 483 296 24 18 chr11 22406158 22406327 -126377145 - MER117 DNA MER1_type -27 170 1 1726 214 100 21 chr11 22406566 22407034 -126376438 + MLT1D LTR MaLR 1 505 0 376 274 164 20 chr11 22407231 22407377 -126376095 + MIR SINE MIR 81 247 -15 1503 207 10 20 chr11 22408603 22408898 -126374574 - AluJo SINE Alu -20 292 1 189 121 0 0 chr11 22409831 22409864 -126373608 + (TTG)n Simple_repeat Simple_repeat 1 33 0 221 221 9 35 chr11 22409888 22410001 -126373471 + CT-rich Low_complexity Low_complexity 2 111 0 2342 82 0 0 chr11 22410217 22410509 -126372963 - AluSq SINE Alu -11 302 11 780 266 40 13 chr11 22410697 22410752 -126372720 + MIR SINE MIR 27 79 -183 186 103 0 0 chr11 22410752 22410781 -126372691 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 780 266 40 13 chr11 22410781 22410951 -126372521 + MIR SINE MIR 79 258 -4 192 40 0 0 chr11 22412293 22412318 -126371154 + (CA)n Simple_repeat Simple_repeat 2 26 0 243 254 0 45 chr11 22412673 22412740 -126370732 - MER103 DNA DNA -41 125 62 180 250 58 0 chr11 22413827 22413879 -126369593 - MIR3 SINE MIR 0 208 154 206 158 53 21 chr11 22414107 22414202 -126369270 + GA-rich Low_complexity Low_complexity 2 99 0 208 229 21 0 chr11 22414233 22414281 -126369191 + L2 LINE L2 3263 3311 -2 244 243 56 84 chr11 22414339 22414390 -126369082 + MIR SINE MIR 159 210 -52 183 80 0 0 chr11 22414390 22414415 -126369057 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 244 243 56 84 chr11 22414415 22414470 -126369002 + MIR SINE MIR 210 262 0 313 246 45 0 chr11 22414519 22414603 -126368869 - MIR SINE MIR -37 171 100 420 325 65 7 chr11 22416890 22417044 -126366428 + MER5B DNA MER1_type 10 172 -6 665 284 19 16 chr11 22417100 22417325 -126366147 + MIR SINE MIR 41 262 0 201 294 184 9 chr11 22417422 22417531 -126365941 + MIR SINE MIR 16 143 -65 338 235 51 20 chr11 22417538 22417636 -126365836 + MER58 DNA MER1_type 12 112 -103 307 225 84 0 chr11 22417628 22417699 -126365773 + MER58 DNA MER1_type 2343 2419 -1 * 478 289 169 0 chr11 22417712 22417854 -126365618 - MER5A DNA MER1_type -6 183 18 315 283 9 26 chr11 22417883 22417996 -126365476 - MER5B DNA MER1_type -67 111 1 1639 165 47 7 chr11 22418061 22418358 -126365114 + AluJb SINE Alu 1 309 -3 2168 133 0 0 chr11 22419890 22420199 -126363273 + AluSx SINE Alu 1 309 -3 666 264 6 24 chr11 22421051 22421218 -126362254 + MIR SINE MIR 99 262 0 260 300 0 67 chr11 22421363 22421453 -126362019 - MIR SINE MIR -159 103 20 194 380 39 68 chr11 22422695 22422778 -126360694 + L2 LINE L2 2927 3011 -261 1881 154 65 11 chr11 22422778 22423134 -126360338 - THE1C LTR MaLR 0 375 1 194 380 39 68 chr11 22423134 22423405 -126360067 + L2 LINE L2 3011 3271 -1 206 344 0 0 chr11 22423405 22423469 -126360003 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr11 22424652 22424673 -126358799 + AT_rich Low_complexity Low_complexity 1 21 0 532 236 14 14 chr11 22425024 22425164 -126358308 + MIR SINE MIR 123 262 0 882 335 55 19 chr11 22425462 22425841 -126357631 - L2 LINE L2 0 3313 2921 597 78 20 20 chr11 22427184 22427286 -126356186 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 330 334 210 29 chr11 22427508 22427897 -126355575 - L2 LINE L2 -265 3048 2592 354 61 0 0 chr11 22428586 22428635 -126354837 + (CA)n Simple_repeat Simple_repeat 2 50 0 274 276 31 55 chr11 22428787 22428914 -126354558 - MER103 DNA DNA -25 141 18 1794 131 63 0 chr11 22429052 22429320 -126354152 - AluSx SINE Alu -27 285 1 411 306 64 13 chr11 22429345 22429502 -126353970 + MLT1I LTR MaLR 1 165 -244 271 253 30 63 chr11 22430036 22430149 -126353323 + MIR SINE MIR 40 153 -62 201 328 139 6 chr11 22430466 22430646 -126352826 + L2 LINE L2 1154 1357 -1957 308 296 37 58 chr11 22430727 22430916 -126352556 - L2 LINE L2 -9 3304 3120 203 318 164 0 chr11 22430948 22431058 -126352414 - L2 LINE L2 -167 3146 3019 836 286 35 12 chr11 22431060 22431315 -126352157 + MLT1J LTR MaLR 1 261 -250 1824 294 83 37 chr11 22431335 22432248 -126351224 - L2 LINE L2 -552 2762 1808 320 313 73 10 chr11 22432507 22432603 -126350869 + L2 LINE L2 3205 3306 -7 264 311 104 54 chr11 22432793 22433034 -126350438 + L2 LINE L2 2804 3056 -216 2577 134 3 0 chr11 22434202 22434576 -126348896 + THE1C LTR MaLR 1 375 0 2188 123 171 104 chr11 22434580 22435101 -126348371 + THE1C-int LTR MaLR 5 560 -1091 * 2750 140 4 24 chr11 22435099 22435562 -126347910 + THE1C-int LTR MaLR 1127 1580 0 2367 141 8 11 chr11 22435562 22435938 -126347534 + THE1C LTR MaLR 1 375 0 261 194 68 48 chr11 22436131 22436234 -126347238 + HAL1b LINE L1 767 871 -477 398 261 40 40 chr11 22436628 22436854 -126346618 + L1M4 LINE L1 2147 2372 -3774 393 302 49 35 chr11 22437068 22437353 -126346119 + L1MC4 LINE L1 6814 7102 -940 319 287 14 76 chr11 22438042 22438265 -126345207 + L1MC5 LINE L1 7704 7912 -49 595 285 111 0 chr11 22439339 22439546 -126343926 - MIR SINE MIR -1 261 32 182 211 0 0 chr11 22439548 22439586 -126343886 - MIR SINE MIR -21 241 204 387 234 7 99 chr11 22439593 22439734 -126343738 - L1M4b LINE L1 -5527 1332 1205 486 0 0 0 chr11 22439871 22439925 -126343547 + (TG)n Simple_repeat Simple_repeat 1 54 0 1810 274 133 61 chr11 22440311 22441175 -126342297 - L1M4b LINE L1 -5923 936 11 301 274 89 37 chr11 22441505 22441640 -126341832 - MIR3 SINE MIR -62 146 5 1510 185 67 3 chr11 22442155 22442453 -126341019 + MER89 LTR ERV1 240 556 -3 210 37 0 0 chr11 22442582 22442609 -126340863 + (TTG)n Simple_repeat Simple_repeat 2 28 0 335 270 157 26 chr11 22442714 22442829 -126340643 - MIR3 SINE MIR -48 160 31 277 366 25 6 chr11 22443995 22444156 -126339316 - MIR3 SINE MIR -3 205 42 416 316 32 37 chr11 22444844 22445034 -126338438 - MER5A DNA MER1_type 0 189 1 266 324 36 0 chr11 22445144 22445255 -126338217 - MIR SINE MIR -64 198 84 197 302 0 0 chr11 22445343 22445396 -126338076 - L2 LINE L2 0 3313 3261 818 228 0 0 chr11 22446181 22446343 -126337129 + FRAM SINE Alu 4 165 -11 251 358 11 0 chr11 22446659 22446754 -126336718 + MIR SINE MIR 36 131 -77 261 234 16 16 chr11 22446870 22446934 -126336538 + MIR3 SINE MIR 140 203 -5 234 0 0 0 chr11 22447596 22447622 -126335850 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr11 22447669 22447697 -126335775 + AT_rich Low_complexity Low_complexity 1 28 0 930 279 50 43 chr11 22448695 22449158 -126334314 - MLT1C LTR MaLR -1 466 1 17966 108 48 2 chr11 22449159 22451748 -126331724 + Charlie3 DNA MER1_type 1 2706 -4 181 211 42 99 chr11 22452327 22452398 -126331074 - L3 LINE CR1 -77 1500 1434 207 0 0 0 chr11 22452400 22452423 -126331049 + (T)n Simple_repeat Simple_repeat 1 23 0 263 247 215 11 chr11 22452519 22452612 -126330860 - MER91C DNA MER1_type 0 140 29 240 35 0 0 chr11 22452996 22453025 -126330447 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 314 68 99 chr11 22453201 22453392 -126330080 + L2 LINE L2 2974 3158 -114 517 322 123 0 chr11 22453468 22453679 -126329793 + MIR SINE MIR 5 241 -21 194 129 32 0 chr11 22453718 22453749 -126329723 + L2 LINE L2 3227 3258 -14 196 311 95 0 chr11 22453755 22453829 -126329643 + L2 LINE L2 3009 3089 -183 2598 38 0 22 chr11 22454042 22454360 -126329112 + AluY SINE Alu 1 311 0 315 346 56 49 chr11 22455870 22456032 -126327440 + MIR3 SINE MIR 31 193 -15 583 298 0 0 chr11 22456137 22456278 -126327194 + MIR SINE MIR 6 146 -116 7018 117 5 25 chr11 22456968 22458071 -126325401 + Tigger1 DNA MER2_type 810 1889 -529 442 320 45 11 chr11 22458075 22458253 -126325219 - L1M4b LINE L1 -6192 667 484 970 208 9 5 chr11 22458292 22458508 -126324964 - L1MD1 LINE L1 0 6242 6026 782 208 0 26 chr11 22458522 22458676 -126324796 - AluJb SINE Alu -29 283 134 1963 178 65 16 chr11 22458679 22459112 -126324360 - L1MD1 LINE L1 -262 5980 5527 1479 209 53 70 chr11 22459120 22459317 -126324155 + MLT1B LTR MaLR 1 189 -201 2598 136 35 57 chr11 22459317 22459825 -126323647 + LOR1a LTR ERV1 1 497 0 1479 209 53 70 chr11 22459825 22460024 -126323448 + MLT1B LTR MaLR 189 390 0 1429 227 41 2 chr11 22460026 22460593 -126322879 - L1MD1 LINE L1 -723 5519 4930 1285 291 75 42 chr11 22460626 22461081 -126322391 - L1MDa LINE L1 -5592 948 510 2223 108 90 0 chr11 22461081 22461425 -126322047 + THE1C LTR MaLR 1 375 0 1285 291 75 42 chr11 22461425 22461502 -126321970 - L1MDa LINE L1 -6030 510 16 340 340 6 37 chr11 22461643 22461805 -126321667 + LTR67 LTR ERVL 132 288 -269 2887 3 0 0 chr11 22461900 22462211 -126321261 - AluYa5 SINE Alu 0 311 1 332 269 308 0 chr11 22463201 22463383 -126320089 - MIR SINE MIR 0 262 25 286 246 0 0 chr11 22463722 22463779 -126319693 + MIR SINE MIR 86 142 -66 462 316 0 0 chr11 22464171 22464285 -126319187 + MIR3 SINE MIR 56 169 -39 28 0 0 0 chr11 22464557 22464585 -126318887 + AT_rich Low_complexity Low_complexity 1 28 0 2153 106 10 0 chr11 22464891 22465184 -126318288 - AluSp SINE Alu -17 296 1 21 0 0 0 chr11 22465259 22465280 -126318192 + AT_rich Low_complexity Low_complexity 1 21 0 308 340 63 19 chr11 22465828 22465987 -126317485 + MIR3 SINE MIR 36 201 -7 375 256 53 68 chr11 22468228 22468242 -126315230 - L2 LINE L2 -5 3267 3254 2058 111 0 31 chr11 22468242 22468570 -126314902 - AluSg1 SINE Alu 0 319 1 375 256 53 68 chr11 22468570 22468687 -126314785 - L2 LINE L2 -18 3254 3137 10648 163 23 12 chr11 22468700 22470634 -126312838 - Tigger1 DNA MER2_type -4 2414 459 16183 180 39 13 chr11 22470634 22478430 -126305042 + L1MA2 LINE L1 15 7723 0 2205 175 99 7 chr11 22478447 22478882 -126304590 - Tigger1 DNA MER2_type -1943 475 1 196 180 33 115 chr11 22479389 22479450 -126304022 - MIR SINE MIR -111 151 96 468 322 13 67 chr11 22480162 22480401 -126303071 - MIR SINE MIR -14 248 23 1362 203 50 10 chr11 22481402 22481702 -126301770 + AluJo SINE Alu 1 312 0 826 235 33 80 chr11 22481845 22482147 -126301325 + MER93b LTR ERV1 19 306 -67 453 231 0 22 chr11 22482147 22482329 -126301143 + (TA)n Simple_repeat Simple_repeat 2 179 0 239 154 0 0 chr11 22482329 22482381 -126301091 + MER57A LTR ERV1 347 398 -5 359 323 24 16 chr11 22482439 22482563 -126300909 - MIR SINE MIR -107 155 31 1226 153 201 13 chr11 22482640 22483134 -126300338 - LTR29 LTR ERV1 -2 608 1 313 295 32 21 chr11 22483561 22483656 -126299816 + MIR3 SINE MIR 96 191 -17 266 286 165 30 chr11 22484131 22484264 -126299208 + MIR SINE MIR 46 196 -66 450 296 86 36 chr11 22485392 22485612 -126297860 + MIR SINE MIR 14 244 -18 244 304 72 0 chr11 22485885 22485954 -126297518 + L2 LINE L2 3118 3191 -81 316 178 33 78 chr11 22485963 22486053 -126297419 - MER90 LTR ERV1 -487 88 3 250 43 0 65 chr11 22486061 22486107 -126297365 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 424 333 70 16 chr11 22486147 22486333 -126297139 - MIR SINE MIR -21 241 46 248 348 17 8 chr11 22486909 22487027 -126296445 + L3 LINE CR1 591 709 -868 740 255 72 94 chr11 22488593 22489177 -126294295 - MLT1G LTR MaLR -4 586 16 243 175 0 0 chr11 22489646 22489703 -126293769 + GA-rich Low_complexity Low_complexity 2 58 0 3844 176 80 20 chr11 22490615 22490725 -126292747 - L1MA9 LINE L1 -33 6279 6177 351 44 0 0 chr11 22490725 22490770 -126292702 + (TG)n Simple_repeat Simple_repeat 1 45 0 3844 176 80 20 chr11 22490770 22491500 -126291972 - L1MA9 LINE L1 -135 6177 5389 3745 198 41 32 chr11 22491500 22491634 -126291838 + L1 LINE L1 4028 4159 -1987 189 0 0 0 chr11 22491634 22491655 -126291817 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3745 198 41 32 chr11 22491655 22492405 -126291067 + L1 LINE L1 4159 4920 -1226 24 53 0 0 chr11 22494491 22494529 -126288943 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 22495105 22495133 -126288339 + AT_rich Low_complexity Low_complexity 1 28 0 511 281 8 8 chr11 22495162 22495283 -126288189 - LTR28 LTR ERV1 0 1020 900 530 259 22 52 chr11 22495363 22495595 -126287877 - LTR1 LTR ERV1 -560 225 1 292 164 16 0 chr11 22495597 22495658 -126287814 + L1ME LINE L1 5543 5604 -517 281 299 35 23 chr11 22495698 22495872 -126287600 + L1ME LINE L1 5691 5866 -255 209 355 0 0 chr11 22496124 22496186 -126287286 - L2 LINE L2 0 3272 3211 235 401 58 11 chr11 22496197 22496471 -126287001 - L2 LINE L2 -457 2857 2571 681 259 80 5 chr11 22496865 22497066 -126286406 - MIR SINE MIR 0 262 47 387 325 12 49 chr11 22497181 22497344 -126286128 + MIR3 SINE MIR 2 158 -50 305 206 68 0 chr11 22497497 22497570 -126285902 + MIR SINE MIR 112 189 -73 2251 99 0 7 chr11 22497647 22497949 -126285523 + AluSx SINE Alu 1 300 -12 400 264 22 143 chr11 22498680 22498762 -126284710 + MIR SINE MIR 17 107 -155 1896 146 141 26 chr11 22498762 22499146 -126284326 - MSTA LTR MaLR 0 428 1 400 264 22 143 chr11 22499146 22499336 -126284136 + MIR SINE MIR 107 256 -6 938 196 179 54 chr11 22499352 22499704 -126283768 + MSTD LTR MaLR 1 396 0 193 232 89 0 chr11 22501264 22501320 -126282152 + MIR SINE MIR 89 149 -113 213 329 53 0 chr11 22501337 22501413 -126282059 + MIR SINE MIR 88 167 -95 311 339 94 0 chr11 22502509 22502636 -126280836 + L2 LINE L2 3128 3266 -6 900 60 0 0 chr11 22503154 22503270 -126280202 + AluY SINE Alu 189 304 -7 212 263 158 32 chr11 22503761 22503856 -126279616 - MIR SINE MIR -150 112 6 299 250 9 69 chr11 22504473 22504589 -126278883 - L3 LINE CR1 -180 1397 1289 285 340 10 10 chr11 22504800 22504900 -126278572 - L2 LINE L2 0 3313 3214 798 309 88 26 chr11 22504901 22505286 -126278186 - MLT1I LTR MaLR 0 409 1 219 330 71 93 chr11 22505287 22505469 -126278003 - L2 LINE L2 -97 3175 2998 216 352 28 37 chr11 22505795 22505903 -126277569 - MIR SINE MIR -86 176 70 864 217 121 84 chr11 22509021 22509436 -126274036 - MSTB1 LTR MaLR -2 430 1 563 198 193 5 chr11 22509881 22510073 -126273399 + LTR37B LTR ERV1 198 425 -43 276 190 77 97 chr11 22510944 22511139 -126272333 + MER31-int LTR ERV1 1248 1438 -3498 275 289 109 23 chr11 22511452 22511580 -126271892 - MIR SINE MIR -65 197 59 227 286 92 73 chr11 22512508 22512702 -126270770 + MIR SINE MIR 11 206 -56 1437 153 77 71 chr11 22512994 22513320 -126270152 - MLT1B LTR MaLR -62 328 1 36505 38 1 0 chr11 22514655 22519908 -126263564 - L1PA3 LINE L1 0 6155 901 6730 65 3 10 chr11 22519904 22520795 -126262677 + L1PA3 LINE L1 24 908 -5238 * 460 264 209 7 chr11 22520920 22521068 -126262404 + MER5A DNA MER1_type 4 181 -8 192 143 191 0 chr11 22521770 22521812 -126261660 - L2 LINE L2 0 3313 3264 4259 156 11 18 chr11 22522148 22522862 -126260610 + MER50 LTR ERV1 1 709 -25 1138 300 123 17 chr11 22522931 22523545 -126259927 + L2 LINE L2 2383 3053 -219 566 267 137 58 chr11 22524115 22524407 -126259065 - L2 LINE L2 0 3313 2999 923 168 19 0 chr11 22524512 22524673 -126258799 + FRAM SINE Alu 5 168 -8 332 224 56 47 chr11 22525057 22525164 -126258308 - MIR SINE MIR -65 197 90 221 266 72 0 chr11 22526497 22526604 -126256868 - MIR SINE MIR -43 219 105 286 216 82 31 chr11 22526863 22526960 -126256512 + Tigger3(Golem) DNA MER2_type 5 106 -2923 * 1571 149 23 70 chr11 22526953 22527253 -126256219 + Tigger3(Golem) DNA MER2_type 2277 2555 -473 1853 136 0 0 chr11 22527253 22527518 -126255954 - AluSc SINE Alu -14 295 31 1571 149 23 70 chr11 22527518 22527614 -126255858 + Tigger3(Golem) DNA MER2_type 2555 2654 -374 839 169 22 0 chr11 22527616 22527752 -126255720 + Tigger3(Golem) DNA MER2_type 2889 3027 -2 967 265 16 4 chr11 22528063 22528316 -126255156 + MIR SINE MIR 6 261 -1 210 91 0 0 chr11 22528533 22528566 -126254906 + (GA)n Simple_repeat Simple_repeat 2 34 0 206 286 0 0 chr11 22529541 22529597 -126253875 - L2 LINE L2 -1 3312 3257 339 317 114 0 chr11 22530073 22530196 -126253276 + MIR SINE MIR 126 262 0 242 233 200 0 chr11 22530221 22530311 -126253161 - MIR SINE MIR -152 110 3 23 54 0 0 chr11 22530873 22530910 -126252562 + AT_rich Low_complexity Low_complexity 1 37 0 362 216 0 0 chr11 22531269 22531343 -126252129 - MLT1H LTR MaLR -401 148 75 296 229 12 0 chr11 22533369 22533452 -126250020 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 274 217 0 22 chr11 22533522 22533614 -126249858 + (TA)n Simple_repeat Simple_repeat 2 91 0 703 203 94 9 chr11 22534147 22534359 -126249113 - Charlie1 DNA MER1_type -2 2759 2530 3798 158 5 0 chr11 22534381 22534996 -126248476 - L1PA12 LINE L1 -75 6093 5476 * 42396 33 23 1 chr11 22534991 22541009 -126242463 - L1PA2 LINE L1 -4 6151 1 853 107 7 0 chr11 22541010 22541150 -126242322 - L1PA12 LINE L1 -676 5485 5345 663 235 36 0 chr11 22541300 22541511 -126241961 - L1P LINE L1 -1178 5619 5400 1041 92 26 13 chr11 22541512 22541665 -126241807 - AluSg/x SINE Alu 0 309 155 1398 179 34 2 chr11 22541676 22542068 -126241404 - L1PA13 LINE L1 -4339 2458 2043 2413 268 24 16 chr11 22542640 22543075 -126240397 - L1M4c LINE L1 -4511 2133 1703 345 121 0 0 chr11 22543075 22543133 -126240339 - L1PA15 LINE L1 0 6165 6108 2413 268 24 16 chr11 22543133 22543634 -126239838 - L1M4c LINE L1 -4941 1703 1128 266 296 0 10 chr11 22543637 22543735 -126239737 - L1M4c LINE L1 -5498 1044 948 34537 113 16 9 chr11 22543758 22549870 -126233602 + L1PA7 LINE L1 11 6164 0 1866 287 18 40 chr11 22549874 22550062 -126233410 - L1M4c LINE L1 -5623 919 728 1939 141 50 0 chr11 22550062 22550359 -126233113 - AluSx SINE Alu 0 312 1 1866 287 18 40 chr11 22550359 22550791 -126232681 - L1M4c LINE L1 -5814 728 313 642 209 11 50 chr11 22551232 22551414 -126232058 - MER53 DNA DNA 0 189 15 185 304 41 94 chr11 22551703 22551874 -126231598 + L2 LINE L2 2922 3083 -189 4225 99 0 0 chr11 22552309 22552904 -126230568 - L1P LINE L1 -3634 2512 1918 2223 78 3 0 chr11 22552904 22553199 -126230273 + L1PA7 LINE L1 5859 6154 0 371 314 29 71 chr11 22553412 22553552 -126229920 + L2 LINE L2 3139 3272 0 1019 219 28 41 chr11 22554959 22555383 -126228089 - MLT1D LTR MaLR 0 505 1 339 342 155 37 chr11 22555731 22556132 -126227340 - L2 LINE L2 0 3272 2825 1917 144 18 15 chr11 22556296 22556629 -126226843 - MER1B DNA MER1_type -1 336 3 432 290 122 15 chr11 22556810 22557306 -126226166 - L1MEd LINE L1 -861 1629 988 285 252 136 0 chr11 22557338 22557441 -126226031 - MIR SINE MIR -25 237 121 21 36 0 0 chr11 22557609 22557637 -126225835 + AT_rich Low_complexity Low_complexity 1 28 0 439 263 35 0 chr11 22557742 22557856 -126225616 - MLT1I LTR MaLR 0 409 292 254 303 0 0 chr11 22557888 22557964 -126225508 - MLT1I LTR MaLR -277 132 57 1777 188 0 0 chr11 22557965 22558263 -126225209 + AluSx SINE Alu 1 298 -14 530 265 147 15 chr11 22559418 22559622 -126223850 + LTR16C LTR ERVL 256 486 -5 359 306 14 34 chr11 22559961 22560167 -126223305 - MLT1I LTR MaLR 0 409 170 718 204 34 6 chr11 22560181 22560357 -126223115 - MER53 DNA DNA -8 181 1 1850 156 22 62 chr11 22560363 22560766 -126222706 + MLT1B LTR MaLR 4 390 0 483 246 45 0 chr11 22560770 22560880 -126222592 - MLT1I LTR MaLR -235 174 60 538 294 68 35 chr11 22561029 22561413 -126222059 - L1MC/D LINE L1 -584 5658 5264 639 345 132 32 chr11 22561752 22562748 -126220724 - L1MC/D LINE L1 -1191 4955 3861 264 283 90 12 chr11 22562934 22563100 -126220372 - L1MC/D LINE L1 -2343 3803 3625 1764 171 3 3 chr11 22563103 22563408 -126220064 + AluJb SINE Alu 1 305 -7 25 51 0 0 chr11 22563590 22563629 -126219843 + AT_rich Low_complexity Low_complexity 1 39 0 796 281 58 8 chr11 22563694 22564195 -126219277 - L1MC/D LINE L1 -2881 3265 2740 283 376 35 12 chr11 22564444 22564614 -126218858 + LTR16A LTR ERVL 263 436 -14 419 319 138 30 chr11 22564616 22565021 -126218451 - L1MC/D LINE L1 -3429 2717 2269 283 231 50 41 chr11 22565736 22565857 -126217615 + HAL1b LINE L1 341 462 -886 24 0 0 0 chr11 22566564 22566588 -126216884 + AT_rich Low_complexity Low_complexity 1 24 0 1008 186 33 14 chr11 22566739 22566954 -126216518 + MER20 DNA MER1_type 1 219 0 348 149 15 0 chr11 22566983 22567050 -126216422 + L1MB2 LINE L1 6077 6144 -27 27 49 0 0 chr11 22567051 22567092 -126216380 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chr11 22568201 22568233 -126215239 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 22568500 22568521 -126214951 + AT_rich Low_complexity Low_complexity 1 21 0 12025 157 14 1 chr11 22569032 22569896 -126213576 - L1PA11 LINE L1 -1 6173 5322 312 27 0 0 chr11 22569896 22569933 -126213539 + (TG)n Simple_repeat Simple_repeat 2 38 0 12025 157 14 1 chr11 22569933 22571975 -126211497 - L1PA11 LINE L1 -852 5322 3233 11533 214 29 37 chr11 22572083 22575149 -126208323 - L1P3 LINE L1 -2715 3746 683 189 0 0 0 chr11 22575149 22575170 -126208302 + (CTGTG)n Simple_repeat Simple_repeat 1 21 0 11533 214 29 37 chr11 22575170 22575848 -126207624 - L1P3 LINE L1 -5778 683 1 21 71 0 0 chr11 22577209 22577251 -126206221 + AT_rich Low_complexity Low_complexity 1 42 0 1107 251 63 20 chr11 22577755 22578244 -126205228 - MER114 LTR ERV -138 510 1 1956 139 0 27 chr11 22578515 22578809 -126204663 - AluSx SINE Alu -25 287 2 87 73 0 0 chr11 22578900 22579078 -126204394 + AT_rich Low_complexity Low_complexity 1 178 0 222 62 0 0 chr11 22579094 22579126 -126204346 + (GA)n Simple_repeat Simple_repeat 2 33 0 289 220 0 0 chr11 22579139 22579189 -126204283 - MER94 DNA DNA -83 51 2 212 83 0 28 chr11 22579339 22579375 -126204097 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 284 226 152 79 chr11 22579546 22579710 -126203762 - L1ME3 LINE L1 -56 6106 5931 1821 235 88 37 chr11 22579760 22579923 -126203549 - L1ME3 LINE L1 -149 6013 5851 555 277 75 56 chr11 22579923 22580639 -126202833 - L1MA4A LINE L1 -474 5829 5102 1303 153 13 18 chr11 22580640 22581093 -126202379 + LTR54 LTR ERV1 1 510 0 709 269 83 9 chr11 22581102 22581318 -126202154 - L1ME3 LINE L1 -1058 5088 4857 305 323 89 13 chr11 22581716 22581874 -126201598 + MIR3 SINE MIR 36 205 -3 279 296 105 26 chr11 22582509 22582661 -126200811 + L2 LINE L2 3148 3311 -2 41 36 0 0 chr11 22582684 22582739 -126200733 + AT_rich Low_complexity Low_complexity 1 55 0 366 361 30 20 chr11 22582781 22582983 -126200489 - MIR SINE MIR -10 252 49 1215 275 30 31 chr11 22583396 22584324 -126199148 + L1MA8 LINE L1 222 2343 -4694 1581 143 24 0 chr11 22584327 22584579 -126198893 + MLT2A2 LTR ERVL 3 260 -193 4857 200 28 2 chr11 22584579 22585536 -126197936 - MSTA-int LTR MaLR -669 982 1 320 77 5 0 chr11 22585536 22585583 -126197889 - MSTA LTR MaLR 0 428 378 1424 211 4 0 chr11 22585583 22585853 -126197619 + L1PA12 LINE L1 6 276 -7305 1968 156 119 8 chr11 22585957 22586342 -126197130 - MSTA LTR MaLR 0 428 1 4835 183 39 3 chr11 22586344 22587352 -126196120 + L1MA8 LINE L1 4777 5820 -1286 4739 170 30 5 chr11 22587360 22588315 -126195157 - L1PB4 LINE L1 -5 6151 5175 2719 169 49 1 chr11 22588313 22589081 -126194391 + L1MA8 LINE L1 5801 6605 -646 * 490 200 100 0 chr11 22589075 22589195 -126194277 + L1MA8 LINE L1 6957 7088 -163 * 360 148 0 0 chr11 22590671 22590732 -126192740 + (TG)n Simple_repeat Simple_repeat 2 62 0 183 80 0 0 chr11 22590863 22590888 -126192584 + (T)n Simple_repeat Simple_repeat 1 25 0 297 0 0 0 chr11 22592432 22592465 -126191007 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 396 30 0 chr11 22592543 22592644 -126190828 - L2 LINE L2 -18 3295 3192 28 0 0 0 chr11 22592875 22592903 -126190569 + AT_rich Low_complexity Low_complexity 1 28 0 180 289 206 0 chr11 22592903 22593000 -126190472 + MIR SINE MIR 139 255 -7 420 265 32 26 chr11 22594004 22594193 -126189279 + L1M4 LINE L1 2183 2372 -3774 769 296 38 12 chr11 22595120 22595360 -126188112 + MIR SINE MIR 17 262 0 254 374 9 0 chr11 22595708 22595815 -126187657 + L2 LINE L2 2250 2357 -957 401 356 109 21 chr11 22595953 22596284 -126187188 + L2 LINE L2 2394 2753 -561 434 286 60 0 chr11 22596334 22596467 -126187005 + L2 LINE L2 2211 2351 -963 2553 297 74 34 chr11 22596473 22597255 -126186217 - L1MEc LINE L1 -4699 1518 791 1636 199 27 3 chr11 22597255 22597547 -126185925 - AluJo SINE Alu -13 299 1 2553 297 74 34 chr11 22597547 22598285 -126185187 - L1MEc LINE L1 -5426 791 84 962 105 0 19 chr11 22598315 22598526 -126184946 + (TA)n Simple_repeat Simple_repeat 1 206 0 550 293 37 18 chr11 22598660 22598847 -126184625 + MIR SINE MIR 64 254 -8 233 333 134 32 chr11 22598992 22599208 -126184264 + MIR SINE MIR 17 254 -8 180 0 0 0 chr11 22599792 22599812 -126183660 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 588 310 79 93 chr11 22600336 22600894 -126182578 + MLT1K LTR MaLR 34 583 -5 478 130 0 0 chr11 22601916 22601985 -126181487 + LTR54 LTR ERV1 1 69 -441 1237 128 20 0 chr11 22601990 22602194 -126181278 + LTR54 LTR ERV1 299 506 -4 2249 79 0 57 chr11 22602588 22602905 -126180567 + AluY SINE Alu 1 299 -12 585 325 38 13 chr11 22603146 22603383 -126180089 - MIR SINE MIR -11 251 9 343 378 16 0 chr11 22603487 22603614 -126179858 + L2 LINE L2 2942 3070 -243 282 271 332 4 chr11 22603812 22604052 -126179420 + L2 LINE L2 2716 3023 -290 1868 115 21 17 chr11 22604083 22604370 -126179102 + AluSc SINE Alu 1 288 -21 23 0 0 0 chr11 22604557 22604580 -126178892 + AT_rich Low_complexity Low_complexity 1 23 0 228 324 144 18 chr11 22604654 22604765 -126178707 - L2 LINE L2 -5 3267 3143 2471 147 2 67 chr11 22604802 22605278 -126178194 - MER65A LTR ERV1 0 445 1 1660 224 76 5 chr11 22605449 22605855 -126177617 - MER65A-int LTR ERV1 -200 4671 4237 1541 243 94 33 chr11 22605866 22606347 -126177125 - MER65A-int LTR ERV1 -756 4115 3606 3357 180 49 21 chr11 22706519 22707229 -126076243 + L1MB5 LINE L1 5411 6140 -34 2167 117 0 0 chr11 22707231 22707529 -126075943 + AluSx SINE Alu 1 298 -14 364 186 137 31 chr11 22707576 22707737 -126075735 + L1MB8 LINE L1 5824 6001 -177 660 9 37 28 chr11 22708097 22708204 -126075268 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 1330 183 7 121 chr11 22708252 22708296 -126075176 + MER21-int LTR ERV1 464 511 -7026 1862 139 38 0 chr11 22708296 22708583 -126074889 - AluSg SINE Alu -12 298 1 1330 183 7 121 chr11 22708583 22708969 -126074503 + MER21-int LTR ERV1 511 845 -6692 669 235 19 12 chr11 22709073 22709235 -126074237 + MER21-int LTR ERV1 857 1019 -4104 271 146 219 24 chr11 22709374 22709456 -126074016 + MER67D LTR ERV1 128 225 -289 853 276 64 21 chr11 22709457 22709740 -126073732 + MER21-int LTR ERV1 1267 4467 -2291 1623 158 124 17 chr11 22709836 22710191 -126073281 - LTR54B LTR ERV1 -2 496 104 219 250 105 13 chr11 22710279 22710355 -126073117 + MIR3 SINE MIR 87 169 -39 395 96 0 0 chr11 22710534 22710586 -126072886 - MLT1B LTR MaLR 0 390 339 566 141 0 0 chr11 22710608 22710693 -126072779 - FLAM_C SINE Alu -24 119 35 1361 185 80 22 chr11 22710696 22711020 -126072452 - MLT1B LTR MaLR -47 343 1 21 95 0 0 chr11 22711245 22711308 -126072164 + AT_rich Low_complexity Low_complexity 1 63 0 197 333 86 12 chr11 22712381 22712462 -126071010 + L2 LINE L2 3195 3281 -32 362 202 53 32 chr11 22712467 22712561 -126070911 - MIR SINE MIR -130 132 37 1515 146 108 21 chr11 22712575 22712862 -126070610 - AluJb SINE Alu 0 312 1 28 0 0 0 chr11 22713014 22713042 -126070430 + AT_rich Low_complexity Low_complexity 1 28 0 1436 203 9 29 chr11 22713585 22713900 -126069572 - AluJb SINE Alu -3 309 1 641 202 0 16 chr11 22713999 22714165 -126069307 - FLAM_C SINE Alu 0 180 17 1864 95 19 8 chr11 22715443 22715705 -126067767 - AluSx SINE Alu -7 305 41 313 325 106 12 chr11 22715745 22715905 -126067567 + L1M4 LINE L1 4039 4213 -1933 275 206 40 119 chr11 22716464 22716590 -126066882 + MIR SINE MIR 134 249 -13 676 266 119 52 chr11 22716928 22717450 -126066022 - L2 LINE L2 -129 3184 1253 * 960 167 52 23 chr11 22717426 22717600 -126065872 + MER5A DNA MER1_type 11 189 0 390 268 86 5 chr11 22717600 22717778 -126065694 - L2 LINE L2 -2028 1286 996 2790 232 98 32 chr11 22717784 22718815 -126064657 + L1M4 LINE L1 2960 4058 -2088 310 323 111 16 chr11 22718839 22719028 -126064444 - L2 LINE L2 0 3313 3107 1227 131 0 0 chr11 22719073 22719248 -126064224 - AluSg/x SINE Alu -4 308 134 2495 61 3 0 chr11 22719248 22719542 -126063930 - AluSx SINE Alu -12 300 6 699 191 73 106 chr11 22719543 22719882 -126063590 + MLT1A1 LTR MaLR 65 396 0 191 274 20 0 chr11 22720480 22720531 -126062941 - MER5B DNA MER1_type 0 178 127 282 263 22 73 chr11 22720554 22720691 -126062781 - MER5B DNA MER1_type 0 178 49 2155 92 7 14 chr11 22720832 22721114 -126062358 - AluSg SINE Alu -28 282 3 1102 190 30 0 chr11 22721361 22721561 -126061911 - AluJb SINE Alu -106 206 1 892 216 103 66 chr11 22721798 22722117 -126061355 + L1ME3A LINE L1 5424 5754 -416 460 208 114 25 chr11 22722338 22722526 -126060946 + MLT1H1 LTR MaLR 341 545 -4 1518 207 42 30 chr11 22722529 22722935 -126060537 + L1ME3A LINE L1 5760 6170 0 972 151 29 76 chr11 22723385 22723535 -126059937 - L1MD2 LINE L1 -16 6343 6206 1946 158 15 55 chr11 22723535 22723939 -126059533 + MLT1B LTR MaLR 3 390 0 972 151 29 76 chr11 22723939 22724026 -126059446 - L1MD2 LINE L1 -153 6206 6117 695 158 151 0 chr11 22724974 22725113 -126058359 - L1MA5 LINE L1 0 6300 6141 545 264 0 0 chr11 22725527 22725648 -126057824 - FLAM_A SINE Alu -14 128 8 585 64 43 0 chr11 22726040 22726134 -126057338 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 221 436 17 12 chr11 22726581 22726753 -126056719 - MIR3 SINE MIR -12 196 24 337 266 292 0 chr11 22726761 22726874 -126056598 + MER5A DNA MER1_type 4 149 -40 241 319 118 0 chr11 22726914 22727033 -126056439 + MIR SINE MIR 74 206 -56 29 60 0 0 chr11 22728998 22729048 -126054424 + AT_rich Low_complexity Low_complexity 1 50 0 251 330 0 21 chr11 22729216 22729310 -126054162 + CT-rich Low_complexity Low_complexity 1 92 0 360 0 0 0 chr11 22730768 22730808 -126052664 + (TG)n Simple_repeat Simple_repeat 2 41 0 552 68 49 0 chr11 22731017 22731130 -126052342 + (TA)n Simple_repeat Simple_repeat 1 118 0 200 256 122 0 chr11 22733889 22733971 -126049501 + MIR SINE MIR 109 200 -62 419 38 0 0 chr11 22736592 22736645 -126046827 - L1M1 LINE L1 -507 5795 5743 22 0 0 0 chr11 22737125 22737147 -126046325 + AT_rich Low_complexity Low_complexity 1 22 0 1247 111 6 0 chr11 22737238 22737410 -126046062 - AluSc SINE Alu -14 295 123 24 32 0 0 chr11 22737747 22737778 -126045694 + AT_rich Low_complexity Low_complexity 1 31 0 231 88 35 18 chr11 22738728 22738785 -126044687 + (TA)n Simple_repeat Simple_repeat 2 59 0 442 301 116 9 chr11 22738915 22739131 -126044341 + L2 LINE L2 3057 3295 -18 473 333 81 5 chr11 22739189 22739387 -126044085 + MIR SINE MIR 29 241 -21 403 215 168 0 chr11 22739963 22740070 -126043402 - MIR3 SINE MIR -34 174 50 26 0 0 0 chr11 22740693 22740719 -126042753 + AT_rich Low_complexity Low_complexity 1 26 0 267 114 0 0 chr11 22740952 22740996 -126042476 + (CA)n Simple_repeat Simple_repeat 2 45 0 33 80 0 0 chr11 22742890 22742965 -126040507 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr11 22742996 22743020 -126040452 + AT_rich Low_complexity Low_complexity 1 24 0 750 234 14 47 chr11 22743162 22743376 -126040096 - L1PB4 LINE L1 0 6156 5950 245 281 116 16 chr11 22743377 22743498 -126039974 - MIR SINE MIR -98 164 32 21 57 0 0 chr11 22743935 22743970 -126039502 + AT_rich Low_complexity Low_complexity 1 35 0 438 293 83 33 chr11 22745052 22745233 -126038239 - MIR SINE MIR 0 262 73 279 0 0 0 chr11 22745269 22745300 -126038172 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 201 204 57 102 chr11 22745350 22745438 -126038034 - MIR SINE MIR -126 136 53 590 244 99 0 chr11 22745813 22745985 -126037487 + MER5A DNA MER1_type 1 189 0 2369 99 0 0 chr11 22746001 22746305 -126037167 - AluSq SINE Alu -8 305 2 262 336 53 15 chr11 22746643 22746774 -126036698 + MIR SINE MIR 57 192 -70 197 340 10 62 chr11 22746859 22746956 -126036516 - MIR SINE MIR -26 236 145 767 233 157 0 chr11 22746965 22747175 -126036297 - MIR SINE MIR -8 254 12 233 345 35 23 chr11 22747189 22747276 -126036196 - MIR SINE MIR -67 141 54 516 267 130 6 chr11 22747950 22748111 -126035361 + MIR SINE MIR 20 200 -62 1723 169 0 4 chr11 22748477 22748750 -126034722 + AluSx SINE Alu 3 274 -38 246 250 16 147 chr11 22749072 22749256 -126034216 + MIR SINE MIR 90 249 -13 986 223 5 15 chr11 22749315 22749517 -126033955 + MER20 DNA MER1_type 16 215 -4 1834 131 3 28 chr11 22750237 22750556 -126032916 - AluSg SINE Alu 0 312 1 347 260 83 62 chr11 22750890 22751082 -126032390 - L2 LINE L2 0 3313 3118 2590 95 11 5 chr11 22752056 22752424 -126031048 + L1PA10 LINE L1 5799 6168 0 339 270 90 28 chr11 22752970 22753181 -126030291 - L1M4 LINE L1 -2583 3563 3340 24 32 0 0 chr11 22753298 22753329 -126030143 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr11 22753425 22753461 -126030011 + AT_rich Low_complexity Low_complexity 1 36 0 193 263 141 30 chr11 22756083 22756182 -126027290 + MIR SINE MIR 120 229 -33 391 317 115 0 chr11 22756237 22756420 -126027052 - MIR SINE MIR -12 250 47 246 300 154 9 chr11 22757084 22757194 -126026278 + L2 LINE L2 3188 3313 0 1261 151 168 7 chr11 22757988 22758279 -126025193 - MER44D DNA MER2_type 0 609 2 26 64 0 0 chr11 22758370 22758417 -126025055 + AT_rich Low_complexity Low_complexity 1 47 0 2268 92 7 7 chr11 22758646 22758950 -126024522 + AluSx SINE Alu 1 304 -8 327 244 85 80 chr11 22759881 22760282 -126023190 - L1MC5 LINE L1 -52 7909 7507 252 289 91 0 chr11 22760293 22760414 -126023058 - L1ME3A LINE L1 -12 6158 6027 302 306 71 20 chr11 22762287 22762385 -126021087 - L2 LINE L2 -32 3240 3138 244 363 177 0 chr11 22762600 22762713 -126020759 - L2 LINE L2 0 3272 3140 204 343 27 0 chr11 22763084 22763157 -126020315 - L2 LINE L2 0 3272 3198 271 289 24 84 chr11 22763791 22763957 -126019515 + MIR SINE MIR 4 159 -103 219 139 0 0 chr11 22764291 22764327 -126019145 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 22765619 22765640 -126017832 + AT_rich Low_complexity Low_complexity 1 21 0 1007 94 0 0 chr11 22767013 22767140 -126016332 + AluSg SINE Alu 1 127 -183 2441 246 33 22 chr11 22767387 22768406 -126015066 + L1M4 LINE L1 3475 4600 -1546 776 121 0 26 chr11 22768469 22768585 -126014887 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr11 22768599 22768665 -126014807 + (GA)n Simple_repeat Simple_repeat 2 67 0 839 170 0 0 chr11 22768725 22768860 -126014612 + FLAM_C SINE Alu 6 140 -3 1010 244 44 4 chr11 22769250 22769479 -126013993 + MIR SINE MIR 6 243 -19 2068 100 4 4 chr11 22769804 22770112 -126013360 - AluSg SINE Alu 0 308 1 4558 168 35 7 chr11 22770728 22771539 -126011933 - Ricksha DNA DNA -1091 955 123 396 230 98 46 chr11 22771548 22771722 -126011750 - MLT1J LTR MaLR -328 183 1 660 146 49 24 chr11 22771764 22771887 -126011585 + FLAM_C SINE Alu 5 130 -3 269 36 54 36 chr11 22771896 22771952 -126011520 + (TAAAAA)n Simple_repeat Simple_repeat 4 60 0 209 243 126 78 chr11 22772101 22772204 -126011268 - MIR3 SINE MIR -87 121 14 191 36 36 0 chr11 22772411 22772439 -126011033 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2011 127 16 19 chr11 22773687 22773995 -126009477 + AluSx SINE Alu 3 309 -3 234 0 0 0 chr11 22775390 22775416 -126008056 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2045 97 7 4 chr11 22775728 22776006 -126007466 - AluSp SINE Alu -5 308 30 261 243 43 0 chr11 22776414 22776484 -126006988 - MIR3 SINE MIR -16 192 120 391 358 68 27 chr11 22776513 22776661 -126006811 + L2 LINE L2 3104 3257 -15 195 42 0 0 chr11 22776666 22776690 -126006782 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr11 22777057 22777087 -126006385 + AT_rich Low_complexity Low_complexity 1 30 0 228 318 171 35 chr11 22777620 22778142 -126005330 - L2 LINE L2 -345 2969 2377 1632 145 42 19 chr11 22778155 22778417 -126005055 - AluJo SINE Alu -24 288 21 2048 105 28 3 chr11 22778638 22778924 -126004548 - AluSx SINE Alu -9 303 11 352 331 53 93 chr11 22779159 22779748 -126003724 - L2 LINE L2 -1098 2216 1605 368 297 216 0 chr11 22779748 22779896 -126003576 + MER5A DNA MER1_type 10 189 0 352 331 53 93 chr11 22779896 22780450 -126003022 - L2 LINE L2 -1709 1605 977 995 167 18 0 chr11 22780549 22780717 -126002755 - FAM SINE Alu -4 171 1 2031 132 3 0 chr11 22780800 22781087 -126002385 + AluSq SINE Alu 3 290 -23 28 0 0 0 chr11 22781087 22781115 -126002357 + AT_rich Low_complexity Low_complexity 1 28 0 637 206 30 0 chr11 22781348 22781479 -126001993 + FRAM SINE Alu 38 172 -4 326 243 44 29 chr11 22781923 22782059 -126001413 + L1M4c LINE L1 2322 2459 -3925 2264 103 0 0 chr11 22782110 22782412 -126001060 + AluJb SINE Alu 1 302 -10 2065 93 21 0 chr11 22783046 22783335 -126000137 - AluSx SINE Alu -17 295 1 21 57 0 0 chr11 22784067 22784102 -125999370 + AT_rich Low_complexity Low_complexity 1 35 0 1767 124 55 68 chr11 22784329 22784400 -125999072 - THE1C LTR MaLR 0 375 305 2137 77 6 49 chr11 22784400 22784725 -125998747 + AluY SINE Alu 1 311 0 1767 124 55 68 chr11 22784725 22785033 -125998439 - THE1C LTR MaLR -70 305 1 755 235 18 12 chr11 22785100 22785266 -125998206 + MIR SINE MIR 1 167 -95 252 265 88 52 chr11 22785412 22785651 -125997821 - L1MC/D LINE L1 -795 5351 5279 2235 111 3 3 chr11 22785651 22785958 -125997514 - AluSq SINE Alu -6 307 1 252 265 88 52 chr11 22785958 22786069 -125997403 - L1MC/D LINE L1 -867 5279 5173 5198 140 34 12 chr11 22786085 22786990 -125996482 - L1MA8 LINE L1 -3 6288 5364 338 213 0 0 chr11 22787485 22787546 -125995926 - MER58 DNA MER1_type -6 2414 2354 274 209 143 11 chr11 22787625 22787716 -125995756 + L1M4 LINE L1 4779 4881 -1265 821 152 28 7 chr11 22787755 22787900 -125995572 + FRAM SINE Alu 6 153 -23 610 159 138 0 chr11 22788619 22788808 -125994664 + AluJo SINE Alu 4 218 -94 743 184 77 0 chr11 22789443 22789611 -125993861 - MER3 DNA MER1_type -28 181 1 641 120 0 0 chr11 22789669 22789769 -125993703 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr11 22790754 22790778 -125992694 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1318 139 0 5 chr11 22790784 22790971 -125992501 - AluJb SINE Alu -42 270 85 2098 89 11 3 chr11 22791952 22792234 -125991238 + AluSp SINE Alu 1 284 -29 282 167 42 14 chr11 22792258 22792330 -125991142 + HAL1 LINE L1 1566 1639 -868 277 296 50 22 chr11 22792496 22792675 -125990797 + L1M4 LINE L1 2669 2852 -3294 1705 171 3 18 chr11 22792709 22792995 -125990477 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr11 22792999 22793024 -125990448 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr11 22793117 22793164 -125990308 + AT_rich Low_complexity Low_complexity 1 47 0 238 226 0 97 chr11 22793293 22793386 -125990086 - L2 LINE L2 -9 3263 3180 261 320 0 14 chr11 22794981 22795060 -125988412 + AluS SINE Alu 3 70 -232 25 0 0 0 chr11 22795887 22795912 -125987560 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr11 22796417 22796452 -125987020 + AT_rich Low_complexity Low_complexity 1 35 0 486 312 78 55 chr11 22796563 22797050 -125986422 - L1M4 LINE L1 -913 5233 4736 248 221 13 0 chr11 22797778 22797855 -125985617 + (TA)n Simple_repeat Simple_repeat 2 79 0 2247 114 0 0 chr11 22797909 22798215 -125985257 + AluSx SINE Alu 3 308 -4 21 0 0 0 chr11 22798451 22798472 -125985000 + AT_rich Low_complexity Low_complexity 1 21 0 800 299 33 5 chr11 22798493 22798704 -125984768 + MIR SINE MIR 34 250 -12 315 225 0 42 chr11 22798824 22798895 -125984577 + MER5A DNA MER1_type 12 79 -110 1575 73 14 5 chr11 22799574 22799793 -125983679 + L1MA2 LINE L1 6084 6304 0 203 228 70 18 chr11 22800276 22800333 -125983139 + L2 LINE L2 3209 3268 -4 269 219 44 37 chr11 22800350 22800443 -125983029 + MER5A DNA MER1_type 87 189 0 636 254 11 38 chr11 22800471 22800656 -125982816 + LTR67 LTR ERVL 10 189 -368 648 304 76 19 chr11 22800663 22801032 -125982440 + L1ME LINE L1 5412 5801 -361 780 116 23 23 chr11 22801350 22801479 -125981993 + FRAM SINE Alu 29 157 -19 656 298 69 5 chr11 22801523 22801741 -125981731 + MIR SINE MIR 7 238 -24 29 0 0 0 chr11 22802537 22802566 -125980906 + AT_rich Low_complexity Low_complexity 1 29 0 2225 113 3 0 chr11 22802632 22802941 -125980531 - AluSp SINE Alu -3 310 1 186 71 0 0 chr11 22802990 22803018 -125980454 + (TTA)n Simple_repeat Simple_repeat 1 28 0 247 258 0 0 chr11 22803024 22803086 -125980386 - L1ME LINE L1 -469 5652 5591 360 359 6 18 chr11 22806974 22807141 -125976331 - MIR SINE MIR -8 254 90 215 378 40 0 chr11 22807334 22807482 -125975990 - MIR3 SINE MIR -1 207 54 869 207 6 0 chr11 22807780 22807944 -125975528 + FAM SINE Alu 2 166 -9 459 241 107 83 chr11 22808387 22808761 -125974711 - L1ME4a LINE L1 -72 6049 5667 220 241 184 35 chr11 22808933 22809020 -125974452 - L2 LINE L2 0 3272 3173 22 35 0 0 chr11 22810110 22810139 -125973333 + AT_rich Low_complexity Low_complexity 1 29 0 310 200 0 25 chr11 22810171 22810251 -125973221 - L1MC4 LINE L1 -1350 6692 6615 798 285 20 0 chr11 22810288 22810488 -125972984 - MIR SINE MIR -58 204 1 212 250 75 122 chr11 22810490 22810527 -125972945 + MIR SINE MIR 73 110 -152 2184 37 81 0 chr11 22810527 22810798 -125972674 + AluY SINE Alu 1 293 -18 212 250 75 122 chr11 22810798 22810948 -125972524 + MIR SINE MIR 110 251 -11 23 0 0 0 chr11 22811143 22811166 -125972306 + AT_rich Low_complexity Low_complexity 1 23 0 331 331 116 29 chr11 22811836 22812008 -125971464 + MIR3 SINE MIR 16 202 -6 2021 109 35 3 chr11 22812454 22812738 -125970734 - AluSg SINE Alu -17 293 1 311 258 56 11 chr11 22812739 22812828 -125970644 - MIR SINE MIR -66 142 50 400 369 41 73 chr11 22812906 22813275 -125970197 - L2 LINE L2 -11 3261 2905 375 311 129 8 chr11 22813420 22813552 -125969920 - L2 LINE L2 0 3272 3125 235 265 125 80 chr11 22813657 22813857 -125969615 + L2 LINE L2 3104 3312 -1 201 25 25 50 chr11 22814753 22814793 -125968679 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 278 349 64 0 chr11 22815155 22815264 -125968208 + MIR SINE MIR 77 192 -70 204 32 32 81 chr11 22815892 22815954 -125967518 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1863 203 84 18 chr11 22816108 22816546 -125966926 - MLT1C LTR MaLR 0 467 1 353 387 7 0 chr11 22817576 22817713 -125965759 - MER91A DNA MER1_type -38 158 21 551 275 108 14 chr11 22817871 22818093 -125965379 - MER102a DNA MER1_type -3 327 85 827 85 0 0 chr11 22818093 22818199 -125965273 - AluY SINE Alu -7 304 199 207 100 20 40 chr11 22818572 22818622 -125964850 + (TATG)n Simple_repeat Simple_repeat 4 52 0 205 250 80 0 chr11 22818712 22818800 -125964672 - L2 LINE L2 -192 3121 3027 942 113 0 0 chr11 22818806 22818948 -125964524 + (TA)n Simple_repeat Simple_repeat 2 143 0 2105 122 3 0 chr11 22818955 22819241 -125964231 - AluSp SINE Alu -26 287 1 1881 193 47 34 chr11 22819242 22819784 -125963688 + MLT2A2 LTR ERVL 4 554 0 352 212 82 0 chr11 22819791 22819876 -125963596 - LTR16A1 LTR ERVL -2 455 364 1144 335 69 13 chr11 22819878 22820431 -125963041 - L2 LINE L2 -665 2649 2066 378 309 32 0 chr11 22821047 22821170 -125962302 - L2 LINE L2 -1303 2011 1885 253 61 0 0 chr11 22821509 22821542 -125961930 - U2 snRNA snRNA -155 33 1 307 405 8 0 chr11 22822441 22822572 -125960900 - MLT1K LTR MaLR -373 215 84 1034 309 51 24 chr11 22822967 22823378 -125960094 + MLT1J2 LTR MaLR 24 445 -5 22 35 0 0 chr11 22823425 22823454 -125960018 + AT_rich Low_complexity Low_complexity 1 29 0 323 318 128 9 chr11 22824062 22824427 -125959045 - MLT1J LTR MaLR -54 457 13 417 264 18 0 chr11 22825681 22825791 -125957681 + MIR SINE MIR 148 259 -3 998 279 38 62 chr11 22826582 22827030 -125956442 - LTR33 LTR ERVL -6 515 79 399 259 94 41 chr11 22827916 22828086 -125955386 - MLT1H LTR MaLR -370 179 1 350 349 79 0 chr11 22828192 22828344 -125955128 - L2 LINE L2 -498 2816 2653 767 286 39 52 chr11 22828445 22828851 -125954621 - L1ME3 LINE L1 -2 6160 5760 284 209 58 0 chr11 22828887 22828973 -125954499 - L1ME3 LINE L1 -852 5294 5204 777 288 76 17 chr11 22829003 22829169 -125954303 + L1M4 LINE L1 4481 4636 -1510 2436 69 3 0 chr11 22829169 22829472 -125954000 + AluY SINE Alu 1 304 -7 777 288 76 17 chr11 22829472 22829711 -125953761 + L1M4 LINE L1 4636 4910 -1236 29 60 0 0 chr11 22829827 22829877 -125953595 + AT_rich Low_complexity Low_complexity 1 50 0 943 213 85 8 chr11 22829919 22830039 -125953433 + L1MA9 LINE L1 6029 6138 -174 213 39 0 0 chr11 22830039 22830065 -125953407 + (CA)n Simple_repeat Simple_repeat 1 26 0 943 213 85 8 chr11 22830065 22830202 -125953270 + L1MA9 LINE L1 6138 6306 -6 217 330 19 39 chr11 22830216 22830319 -125953153 - L2 LINE L2 -850 2464 2364 437 287 39 33 chr11 22831325 22831506 -125951966 + L2 LINE L2 3132 3313 0 5759 114 4 6 chr11 22832136 22833368 -125950104 + L1PA10 LINE L1 4838 6066 -102 22 0 0 0 chr11 22833368 22833390 -125950082 + AT_rich Low_complexity Low_complexity 1 22 0 871 49 0 49 chr11 22833520 22833642 -125949830 + L1PA10 LINE L1 6053 6168 0 1681 192 50 18 chr11 22833711 22834092 -125949380 + LTR52 LTR ERVL 3 395 -26 203 133 0 0 chr11 22834111 22834141 -125949331 + (GA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr11 22834965 22834986 -125948486 + (A)n Simple_repeat Simple_repeat 1 21 0 14259 184 30 24 chr11 22835720 22836541 -125946931 + L1MA8 LINE L1 3009 3823 -3887 1796 187 14 14 chr11 22836541 22836889 -125946583 + MER7A DNA MER2_type 1 346 0 14259 184 30 24 chr11 22836889 22838773 -125944699 + L1MA8 LINE L1 3823 5694 -2016 1600 189 20 23 chr11 22838773 22839075 -125944397 - AluJo SINE Alu -10 302 2 14259 184 30 24 chr11 22839075 22839712 -125943760 + L1MA8 LINE L1 5694 6325 -1385 2519 46 0 43 chr11 22839712 22840037 -125943435 + AluY SINE Alu 1 311 0 14259 184 30 24 chr11 22840037 22841327 -125942145 + L1MA8 LINE L1 6325 7707 -3 24 32 0 0 chr11 22841398 22841429 -125942043 + AT_rich Low_complexity Low_complexity 1 31 0 320 329 92 65 chr11 22841959 22842330 -125941142 - L2 LINE L2 0 3272 2892 * 510 266 85 11 chr11 22842298 22842481 -125940991 + MIR SINE MIR 16 212 -50 22 0 0 0 chr11 22842981 22843003 -125940469 + AT_rich Low_complexity Low_complexity 1 22 0 418 333 70 9 chr11 22843022 22843235 -125940237 - MIR SINE MIR -27 235 10 1308 202 29 40 chr11 22844120 22844397 -125939075 + AluJb SINE Alu 1 274 -38 189 0 0 0 chr11 22844398 22844419 -125939053 + (TC)n Simple_repeat Simple_repeat 1 21 0 346 239 0 23 chr11 22844424 22844512 -125938960 - L1MC4 LINE L1 -1339 6703 6618 2202 97 3 7 chr11 22844514 22844881 -125938591 - AluY SINE Alu 0 311 1 234 311 19 57 chr11 22845324 22845430 -125938042 + MIR SINE MIR 79 180 -82 495 276 49 12 chr11 22845432 22845595 -125937877 + MER69A DNA AcHobo 2 170 -7 510 61 0 0 chr11 22845632 22845698 -125937774 + (CA)n Simple_repeat Simple_repeat 2 67 0 185 0 40 0 chr11 22845702 22845727 -125937745 + (GA)n Simple_repeat Simple_repeat 2 27 0 633 186 0 0 chr11 22845729 22845831 -125937641 - MLT2C1 LTR ERVL -62 335 234 3259 192 54 70 chr11 22845838 22846315 -125937157 - L1MA9 LINE L1 -38 6274 5816 513 58 0 0 chr11 22846315 22846384 -125937088 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3259 192 54 70 chr11 22846384 22846812 -125936660 - L1MA9 LINE L1 -496 5816 5383 2652 200 93 7 chr11 22846815 22847491 -125935981 + L1MA9 LINE L1 4653 5386 -760 1576 206 16 6 chr11 22847491 22847802 -125935670 - MLT2C2 LTR ERVL -150 314 1 35 0 0 0 chr11 22847969 22848004 -125935468 + AT_rich Low_complexity Low_complexity 1 35 0 187 296 19 0 chr11 22849173 22849227 -125934245 - MIR3 SINE MIR -24 184 130 338 219 134 0 chr11 22849557 22849639 -125933833 + MIR3 SINE MIR 108 200 -8 244 298 76 46 chr11 22851816 22851947 -125931525 - L2 LINE L2 0 3313 3179 227 167 37 74 chr11 22853084 22853138 -125930334 - LTR67 LTR ERVL -2 555 504 472 211 18 9 chr11 22853156 22853270 -125930202 - L1MB8 LINE L1 -9 6169 6055 378 265 31 0 chr11 22854145 22854243 -125929229 + L3 LINE CR1 1472 1572 -5 3572 68 12 1 chr11 22854731 22855442 -125928030 - L1PA7 LINE L1 -544 5610 4896 4180 65 2 0 chr11 22855444 22855979 -125927493 + L1PA7 LINE L1 5618 6153 -1 368 339 174 26 chr11 22856653 22856957 -125926515 - L2 LINE L2 -6 3266 2918 393 244 81 116 chr11 22857009 22857181 -125926291 + MIR SINE MIR 11 176 -86 372 276 65 28 chr11 22857965 22858179 -125925293 - L1ME4a LINE L1 -187 5934 5713 23 0 0 0 chr11 22858761 22858784 -125924688 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 22859468 22859488 -125923984 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 247 310 23 54 chr11 22860756 22860885 -125922587 - MIR3 SINE MIR -3 205 81 1097 214 136 9 chr11 22860971 22861317 -125922155 - Charlie1 DNA MER1_type -4 2757 2368 1459 178 94 12 chr11 22861417 22861737 -125921735 + MER63 DNA MER1_type 672 1017 -45 2612 93 11 0 chr11 22861741 22862116 -125921356 - L1PA10 LINE L1 -499 5632 5254 3750 76 18 0 chr11 22862116 22862615 -125920857 + L1PA10 LINE L1 5656 6164 -4 1915 85 0 35 chr11 22862619 22862970 -125920502 + AluY SINE Alu 35 376 0 1264 197 38 65 chr11 22863192 22863645 -125919827 - MLT1A1 LTR MaLR -3 362 1 206 280 0 0 chr11 22864029 22864079 -125919393 - L2 LINE L2 -2 3311 3262 394 285 23 46 chr11 22865043 22865173 -125918299 + MIR SINE MIR 15 141 -121 552 245 31 46 chr11 22865178 22865374 -125918098 - L2 LINE L2 -1 3312 3120 5709 193 98 22 chr11 22865376 22865671 -125917801 - Charlie1a DNA MER1_type -1310 1451 1180 1490 200 10 13 chr11 22865671 22865971 -125917501 + AluJb SINE Alu 11 309 -3 5709 193 98 22 chr11 22865971 22866759 -125916713 - Charlie1a DNA MER1_type -1581 1180 244 4254 58 0 0 chr11 22866759 22867289 -125916183 - L1PA7 LINE L1 0 6154 5625 5709 193 98 22 chr11 22867289 22867553 -125915919 - Charlie1a DNA MER1_type -2517 244 1 504 269 120 41 chr11 22867596 22867838 -125915634 - L2 LINE L2 -229 3084 2824 257 236 136 45 chr11 22867825 22867935 -125915537 + MIR SINE MIR 132 251 -11 * 338 321 77 84 chr11 22868489 22868776 -125914696 - L2 LINE L2 0 3272 2988 1563 183 24 154 chr11 22868778 22869369 -125914103 - MER67D LTR ERV1 0 514 1 363 386 6 12 chr11 22869477 22869640 -125913832 - MIR SINE MIR -88 174 13 797 234 19 31 chr11 22869964 22870220 -125913252 - L1ME2 LINE L1 -19 6145 5893 1754 190 25 0 chr11 22870232 22870558 -125912914 + MLT2C1 LTR ERVL 5 338 -59 1302 239 75 11 chr11 22870566 22870966 -125912506 - L1ME2 LINE L1 -418 5746 5321 2259 110 0 7 chr11 22872205 22872506 -125910966 - AluSc SINE Alu -10 299 1 325 320 112 39 chr11 22873090 22873432 -125910040 - L2 LINE L2 -221 3051 2685 676 296 64 20 chr11 22873474 22873724 -125909748 - MIR SINE MIR 0 262 2 720 263 31 31 chr11 22873730 22873985 -125909487 - MIR SINE MIR -3 259 5 238 333 63 42 chr11 22873985 22874174 -125909298 - L2 LINE L2 -665 2649 2457 1281 247 183 25 chr11 22874204 22874595 -125908877 - MLT1F1 LTR MaLR 0 567 88 2206 124 11 14 chr11 22874595 22874951 -125908521 - THE1A LTR MaLR 0 355 1 1281 247 183 25 chr11 22874951 22875053 -125908419 - MLT1F1 LTR MaLR -479 88 3 639 267 53 77 chr11 22876011 22876258 -125907214 + MIR SINE MIR 12 252 -10 234 62 0 0 chr11 22876263 22876295 -125907177 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1285 257 80 21 chr11 22876526 22876962 -125906510 + MLT1C LTR MaLR 6 467 0 194 341 84 70 chr11 22877036 22877394 -125906078 + L2 LINE L2 2910 3272 0 24 77 0 0 chr11 22878461 22878513 -125904959 + AT_rich Low_complexity Low_complexity 1 52 0 2043 120 17 0 chr11 22879389 22879680 -125903792 + AluSq SINE Alu 1 296 -17 200 287 8 107 chr11 22879760 22879882 -125903590 + MIR3 SINE MIR 60 169 -39 246 202 124 45 chr11 22880060 22880139 -125903333 - MER103 DNA DNA -70 96 8 508 311 70 48 chr11 22880139 22880538 -125902934 - MLT1I LTR MaLR 0 409 2 219 280 147 0 chr11 22880575 22880650 -125902822 + L3 LINE CR1 1491 1576 -1 267 152 0 0 chr11 22881243 22881289 -125902183 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr11 22882376 22882408 -125901064 + AT_rich Low_complexity Low_complexity 1 32 0 290 355 48 24 chr11 22882488 22882654 -125900818 - MIR3 SINE MIR -21 187 18 206 156 0 22 chr11 22883066 22883111 -125900361 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 194 173 0 39 chr11 22883115 22883167 -125900305 + CT-rich Low_complexity Low_complexity 2 51 0 3103 169 41 66 chr11 22883971 22884680 -125898792 + LTR8 LTR ERV1 1 691 0 234 306 24 0 chr11 22884680 22884765 -125898707 + LTR16A LTR ERVL 28 114 -336 1313 211 27 77 chr11 22884936 22885301 -125898171 - MLT1A1 LTR MaLR -18 347 1 254 284 0 35 chr11 22885309 22885425 -125898047 + CT-rich Low_complexity Low_complexity 1 112 0 362 356 85 11 chr11 22886078 22886266 -125897206 + MIR SINE MIR 31 232 -30 1772 234 102 14 chr11 22886273 22886785 -125896687 + MLT1F1 LTR MaLR 1 557 -10 239 345 28 35 chr11 22887168 22887310 -125896162 - MIR SINE MIR -113 149 9 630 317 44 0 chr11 22888543 22888770 -125894702 + MIR SINE MIR 15 251 -11 2105 298 57 18 chr11 22889156 22889928 -125893544 + L2 LINE L2 1934 2735 -579 250 50 25 25 chr11 22889930 22889970 -125893502 + L1P4 LINE L1 5638 5677 -484 437 280 124 97 chr11 22890007 22890216 -125893256 + L2 LINE L2 2741 2943 -370 435 19 0 0 chr11 22890216 22890268 -125893204 + (CA)n Simple_repeat Simple_repeat 2 53 0 437 280 124 97 chr11 22890268 22890616 -125892856 + L2 LINE L2 2943 3313 0 213 407 55 0 chr11 22890703 22890848 -125892624 - MIR3 SINE MIR -28 180 28 4260 134 21 0 chr11 22891016 22891678 -125891794 + L1PA14 LINE L1 5484 6159 -2 242 116 23 0 chr11 22892187 22892230 -125891242 + CT-rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr11 22892531 22892553 -125890919 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 22892572 22892597 -125890875 + AT_rich Low_complexity Low_complexity 1 25 0 273 254 0 42 chr11 22895231 22895302 -125888170 - MIR SINE MIR 0 262 195 466 272 97 53 chr11 22895303 22895509 -125887963 - MIR SINE MIR -25 237 23 200 333 50 10 chr11 22895501 22895600 -125887872 + L3 LINE CR1 1079 1181 -396 * 648 282 82 37 chr11 22895888 22896133 -125887339 + L3 LINE CR1 1225 1480 -97 25 0 0 0 chr11 22896424 22896449 -125887023 + AT_rich Low_complexity Low_complexity 1 25 0 524 264 0 8 chr11 22896468 22896597 -125886875 - L2 LINE L2 -1 3312 3185 254 304 87 0 chr11 22896671 22896763 -125886709 + L2 LINE L2 3171 3270 -2 551 288 214 57 chr11 22896954 22897048 -125886424 + L3 LINE CR1 1081 1159 -418 799 244 77 5 chr11 22897048 22897257 -125886215 - MER58A DNA MER1_type 0 224 1 551 288 214 57 chr11 22897257 22897299 -125886173 + L3 LINE CR1 1159 1193 -384 2168 127 135 5 chr11 22897299 22897677 -125885795 - MSTA LTR MaLR 0 428 2 551 288 214 57 chr11 22897677 22897959 -125885513 + L3 LINE CR1 1193 1566 -11 532 328 57 15 chr11 22899279 22899544 -125883928 + MER102a DNA MER1_type 45 320 -10 365 257 86 29 chr11 22899650 22899790 -125883682 - LTR33A LTR ERVL -363 160 13 229 313 30 0 chr11 22899896 22899963 -125883509 + MIR3 SINE MIR 126 194 -14 21 0 0 0 chr11 22900166 22900187 -125883285 + AT_rich Low_complexity Low_complexity 1 21 0 182 36 0 36 chr11 22900353 22900381 -125883091 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 27 49 0 0 chr11 22901168 22901209 -125882263 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr11 22901808 22901828 -125881644 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 187 298 68 73 chr11 22902690 22902895 -125880577 - L2 LINE L2 -3 3310 3107 447 351 53 0 chr11 22903399 22903607 -125879865 + L2 LINE L2 2841 3059 -254 285 346 30 0 chr11 22903920 22904021 -125879451 - MLT1L LTR MaLR -344 271 168 207 204 0 0 chr11 22904207 22904251 -125879221 + (TA)n Simple_repeat Simple_repeat 1 44 0 207 0 0 0 chr11 22905154 22905177 -125878295 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 234 0 0 0 chr11 22905474 22905500 -125877972 + (T)n Simple_repeat Simple_repeat 1 26 0 194 323 140 11 chr11 22905812 22905905 -125877567 + MIR3 SINE MIR 68 172 -36 839 301 27 12 chr11 22906152 22906408 -125877064 - MIR SINE MIR 0 262 3 247 282 0 14 chr11 22907170 22907241 -125876231 + MLT1J LTR MaLR 3 72 -439 232 254 42 14 chr11 22907293 22907364 -125876108 + MLT1L LTR MaLR 207 279 -336 24 0 0 0 chr11 22907531 22907555 -125875917 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr11 22907850 22907876 -125875596 + (GA)n Simple_repeat Simple_repeat 1 26 0 323 308 70 23 chr11 22908177 22908391 -125875081 + MLT1L LTR MaLR 374 597 -18 786 219 123 101 chr11 22908790 22909147 -125874325 + MSTD LTR MaLR 1 396 0 202 359 134 14 chr11 22909170 22909312 -125874160 - MIR SINE MIR -70 192 34 803 246 14 33 chr11 22909329 22909544 -125873928 - LTR40a LTR ERVL -306 213 3 21 0 0 0 chr11 22909713 22909734 -125873738 + AT_rich Low_complexity Low_complexity 1 21 0 1060 136 12 12 chr11 22909734 22909903 -125873569 + MSTB LTR MaLR 258 426 0 1172 176 88 0 chr11 22909970 22910186 -125873286 + MER46A DNA MER2_type 1 235 -1 820 153 107 0 chr11 22910560 22910710 -125872762 - MER46A DNA MER2_type -69 167 2 924 217 16 0 chr11 22911242 22911431 -125872041 + MLT2B1 LTR ERVL 9 200 -320 309 335 48 37 chr11 22911767 22911955 -125871517 - MIR SINE MIR -70 192 3 2821 7 0 0 chr11 22912133 22912438 -125871034 - AluYa5 SINE Alu -6 305 1 2381 91 3 0 chr11 22913401 22913699 -125869773 - AluSp SINE Alu -14 299 1 1849 229 35 37 chr11 22913699 22914244 -125869228 - L1ME1 LINE L1 -10 6156 5613 1424 211 31 25 chr11 22914280 22914602 -125868870 + MLT1B LTR MaLR 67 390 0 866 184 57 14 chr11 22914602 22914830 -125868642 - L1ME1 LINE L1 -555 5614 5367 715 281 36 0 chr11 22914840 22915036 -125868436 + MLT1B LTR MaLR 188 390 0 1110 216 37 143 chr11 22915692 22916099 -125867373 + MLT1A2 LTR MaLR 3 366 -8 3030 224 9 9 chr11 22916103 22916769 -125866703 + MLT1A2-int LTR MaLR 1 666 -1069 336 246 139 16 chr11 22917998 22918120 -125865352 + MIR SINE MIR 120 256 -6 181 0 0 65 chr11 22918644 22918675 -125864797 + (CAA)n Simple_repeat Simple_repeat 2 30 0 261 225 50 50 chr11 22919914 22919994 -125863478 + MIR SINE MIR 71 150 -112 229 256 0 41 chr11 22920078 22920199 -125863273 + T-rich Low_complexity Low_complexity 5 120 0 205 171 0 0 chr11 22920756 22920791 -125862681 - L2 LINE L2 -9 3263 3229 207 162 0 0 chr11 22920890 22920927 -125862545 + (TG)n Simple_repeat Simple_repeat 2 38 0 437 309 115 6 chr11 22920945 22921110 -125862362 + MIR3 SINE MIR 4 186 -22 21 71 0 0 chr11 22921192 22921234 -125862238 + AT_rich Low_complexity Low_complexity 1 42 0 2499 57 0 25 chr11 22921525 22921843 -125861629 - AluY SINE Alu -1 310 1 441 316 126 5 chr11 22922084 22922299 -125861173 - MIR SINE MIR -2 260 20 1154 158 6 0 chr11 22922493 22922670 -125860802 - AluJb SINE Alu -4 308 131 381 93 0 0 chr11 22922670 22922724 -125860748 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 251 215 28 65 chr11 22922724 22922761 -125860711 + HERVS71 LTR ERV1 453 490 -8488 1567 182 3 25 chr11 22922761 22923079 -125860393 - AluJo SINE Alu 0 312 2 251 215 28 65 chr11 22923079 22923148 -125860324 + HERVS71 LTR ERV1 490 555 -8423 452 245 0 0 chr11 22923270 22923364 -125860108 - MIR SINE MIR -78 184 91 265 141 0 31 chr11 22923586 22923650 -125859822 + (TAA)n Simple_repeat Simple_repeat 1 62 0 487 213 41 25 chr11 22923715 22923837 -125859635 - MIR SINE MIR 0 262 139 318 26 0 0 chr11 22924009 22924048 -125859424 + (TG)n Simple_repeat Simple_repeat 2 40 0 408 314 85 58 chr11 22924063 22924286 -125859186 - L3 LINE CR1 -5 1572 1344 468 276 29 65 chr11 22924324 22924494 -125858978 + MIR SINE MIR 28 191 -71 2223 123 7 0 chr11 22925476 22925785 -125857687 + AluSq SINE Alu 1 311 -2 183 184 0 0 chr11 22926265 22926303 -125857169 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 196 370 50 25 chr11 22927274 22927393 -125856079 - L2 LINE L2 0 3272 3151 186 309 0 44 chr11 22928485 22928553 -125854919 - L2 LINE L2 -2 3270 3206 679 293 86 0 chr11 22928774 22929006 -125854466 - MIR SINE MIR -6 256 5 676 319 96 69 chr11 22928982 22929211 -125854261 + L2 LINE L2 2199 2420 -894 * 186 43 0 0 chr11 22929211 22929234 -125854238 + (CA)n Simple_repeat Simple_repeat 1 23 0 676 319 96 69 chr11 22929234 22929681 -125853791 + L2 LINE L2 2420 2893 -421 596 328 75 40 chr11 22929731 22930130 -125853342 + L2 LINE L2 2893 3305 -8 233 289 171 66 chr11 22930669 22930956 -125852516 - L3 LINE CR1 -279 1298 982 205 318 94 0 chr11 22931255 22931340 -125852132 + MIR SINE MIR 47 139 -69 282 125 0 0 chr11 22932502 22932550 -125850922 + (CA)n Simple_repeat Simple_repeat 2 49 0 374 174 82 0 chr11 22933310 22933408 -125850064 + L1M4 LINE L1 3875 3980 -2166 2400 44 0 0 chr11 22933432 22933728 -125849744 - L1PA4 LINE L1 -3 6152 5857 24 32 0 0 chr11 22933860 22933891 -125849581 + AT_rich Low_complexity Low_complexity 1 31 0 391 336 95 75 chr11 22934757 22935052 -125848420 - L2 LINE L2 0 3272 2972 690 229 6 13 chr11 22935238 22935395 -125848077 + MLT1C LTR MaLR 310 465 -2 1649 185 35 72 chr11 22935410 22935815 -125847657 + MLT1B LTR MaLR 1 390 0 342 306 75 0 chr11 22937300 22937434 -125846038 - MIR SINE MIR -10 252 109 423 328 27 16 chr11 22937808 22937994 -125845478 + MIR3 SINE MIR 21 208 0 209 176 0 0 chr11 22938162 22938196 -125845276 + (CA)n Simple_repeat Simple_repeat 1 34 0 1474 169 74 24 chr11 22938270 22938566 -125844906 - AluJo SINE Alu 0 312 2 326 189 25 25 chr11 22938990 22939112 -125844360 + T-rich Low_complexity Low_complexity 4 125 0 1379 104 14 5 chr11 22939115 22939335 -125844137 - L1MA9 LINE L1 0 6312 6091 472 226 35 17 chr11 22939922 22940037 -125843435 - L2 LINE L2 -1 3312 3196 21 36 0 0 chr11 22940491 22940519 -125842953 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 22940653 22940674 -125842798 + AT_rich Low_complexity Low_complexity 1 21 0 3026 239 89 43 chr11 22940948 22941836 -125841636 - L1ME1 LINE L1 -5 6161 5315 1762 116 11 4 chr11 22941836 22942104 -125841368 - L1PA10 LINE L1 -1 6167 5898 3026 239 89 43 chr11 22942104 22943162 -125840310 - L1ME1 LINE L1 -851 5315 4307 2192 57 0 93 chr11 22943162 22943495 -125839977 - AluY SINE Alu -9 302 1 3026 239 89 43 chr11 22943495 22943617 -125839855 - L1ME1 LINE L1 -1859 4307 4192 1340 200 54 41 chr11 22943617 22943912 -125839560 - AluSx SINE Alu -13 299 1 3026 239 89 43 chr11 22943912 22944035 -125839437 - L1ME1 LINE L1 -1974 4192 3859 418 269 119 43 chr11 22944040 22944534 -125838938 - L1ME4a LINE L1 -158 5963 5403 460 298 23 0 chr11 22944625 22944756 -125838716 - MIR SINE MIR 0 262 129 219 254 0 0 chr11 22945953 22946012 -125837460 + A-rich Low_complexity Low_complexity 2 60 0 1682 150 0 4 chr11 22947629 22947882 -125835590 - AluSx SINE Alu -60 252 1 246 32 0 0 chr11 22948760 22948791 -125834681 + (TG)n Simple_repeat Simple_repeat 2 32 0 419 276 18 80 chr11 22948797 22948960 -125834512 - MIR SINE MIR -71 191 39 353 324 29 7 chr11 22948973 22949112 -125834360 + MIR SINE MIR 71 212 -50 253 350 45 32 chr11 22949842 22949910 -125833562 + MIR SINE MIR 2 68 -194 2328 70 0 22 chr11 22949910 22950222 -125833250 + AluY SINE Alu 1 305 -6 253 350 45 32 chr11 22950222 22950373 -125833099 + MIR SINE MIR 68 224 -38 225 159 0 0 chr11 22951385 22951429 -125832043 + T-rich Low_complexity Low_complexity 1 44 0 1782 168 55 0 chr11 22951439 22951731 -125831741 - AluSx SINE Alu -4 308 1 245 282 26 26 chr11 22951758 22951836 -125831636 + MLT1K LTR MaLR 188 265 -323 236 356 87 0 chr11 22954278 22954393 -125829079 + MIR3 SINE MIR 43 167 -41 545 96 0 0 chr11 22954395 22954478 -125828994 - L1PA13 LINE L1 -7 6156 6074 2554 33 0 3 chr11 22954764 22955071 -125828401 + L1PA3 LINE L1 5845 6150 -5 2227 124 0 0 chr11 22955409 22955715 -125827757 + AluSg1 SINE Alu 1 306 -3 313 159 120 3 chr11 22956216 22956306 -125827166 - L1MD3 LINE L1 0 7808 7723 1596 234 50 46 chr11 22956353 22956854 -125826618 - MLT1D LTR MaLR -2 503 1 1146 206 14 18 chr11 22956854 22957130 -125826342 - L1MD3 LINE L1 -80 7915 7641 264 302 12 0 chr11 22958036 22958122 -125825350 - MLT1I LTR MaLR -256 153 67 405 309 64 21 chr11 22958136 22958324 -125825148 - L1ME LINE L1 -530 5591 5396 202 239 91 11 chr11 22958648 22958736 -125824736 + MIR SINE MIR 125 219 -43 22 70 0 0 chr11 22959145 22959188 -125824284 + AT_rich Low_complexity Low_complexity 1 43 0 577 366 18 4 chr11 22959285 22959512 -125823960 - MIR SINE MIR -13 249 20 26 0 0 0 chr11 22959698 22959724 -125823748 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 22959744 22959770 -125823702 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42514 35 22 1 chr11 22959770 22965778 -125817694 - L1PA3 LINE L1 -13 6142 4 216 0 0 0 chr11 22967387 22967411 -125816061 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 599 207 0 25 chr11 22967414 22967535 -125815937 - FLAM_A SINE Alu -15 118 1 329 255 35 20 chr11 22967607 22967841 -125815631 - L1ME3A LINE L1 -53 6117 5844 305 256 8 83 chr11 22967898 22968031 -125815441 - L1ME3A LINE L1 -331 5839 5717 888 271 139 15 chr11 22968245 22968584 -125814888 - L2 LINE L2 -559 2755 2375 237 312 57 43 chr11 22969250 22969391 -125814081 + L2 LINE L2 2909 3051 -221 389 230 147 23 chr11 22969799 22969963 -125813509 + MLT1H LTR MaLR 6 159 -291 309 257 0 0 chr11 22969963 22970033 -125813439 - MER96 DNA MER1_type? -3 172 103 346 359 24 53 chr11 22970497 22970703 -125812769 + L2 LINE L2 2912 3111 -202 319 307 64 14 chr11 22970796 22970936 -125812536 - MIR SINE MIR -42 220 74 374 291 77 46 chr11 22971224 22971420 -125812052 - L1ME3A LINE L1 -517 5604 5403 249 108 0 0 chr11 22974072 22974109 -125809363 + (A)n Simple_repeat Simple_repeat 1 37 0 1544 85 0 5 chr11 22974187 22974387 -125809085 + AluSq SINE Alu 1 199 -114 337 91 0 0 chr11 22974387 22974431 -125809041 + AluSq SINE Alu 247 290 -11 626 304 55 5 chr11 22975031 22975248 -125808224 - MIR SINE MIR 0 262 35 395 164 75 0 chr11 22977289 22977356 -125806116 - L2 LINE L2 -1 3312 3241 1455 185 26 86 chr11 22977393 22977777 -125805695 + MLT1A2 LTR MaLR 1 361 -13 220 313 37 86 chr11 22977889 22978157 -125805315 - L2 LINE L2 -207 3065 2811 267 316 235 0 chr11 22978161 22978408 -125805064 + L3 LINE CR1 1269 1573 -4 6192 160 13 16 chr11 22978608 22979676 -125803796 + Tigger1 DNA MER2_type 1 1065 -1353 1535 159 17 60 chr11 22979673 22979974 -125803498 + Tigger1 DNA MER2_type 2130 2417 -1 * 183 42 0 0 chr11 22980660 22980684 -125802788 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 205 0 0 chr11 22981244 22981283 -125802189 - Charlie4 DNA MER1_type 0 1961 1923 1839 244 52 48 chr11 22981300 22981837 -125801635 - MLT1F LTR MaLR -3 539 1 554 358 123 34 chr11 22981981 22982509 -125800963 - L2 LINE L2 -344 2970 2396 420 266 101 18 chr11 22983573 22983742 -125799730 + MIR SINE MIR 6 188 -74 204 259 93 19 chr11 22985345 22985399 -125798073 + L2 LINE L2 3153 3210 -62 2194 87 0 62 chr11 22985952 22986273 -125797199 - AluY SINE Alu -10 301 1 21 0 0 0 chr11 22987152 22987173 -125796299 + AT_rich Low_complexity Low_complexity 1 21 0 537 292 8 8 chr11 22987248 22987378 -125796094 - L2 LINE L2 -2 3270 3141 220 333 0 0 chr11 22987640 22987709 -125795763 + MIR SINE MIR 168 236 -26 210 243 56 93 chr11 22987724 22987831 -125795641 - MIR SINE MIR -24 238 136 2482 135 10 0 chr11 22987841 22988233 -125795239 - L1PA16 LINE L1 -2 6164 5769 5375 198 13 5 chr11 22988234 22991615 -125791857 - L1PA15 LINE L1 -2 7601 4054 4180 280 57 52 chr11 22991617 22993674 -125789798 - L1PA15 LINE L1 -5508 2073 8 3102 157 24 2 chr11 22993682 22994341 -125789131 - L1P4 LINE L1 -384 5782 5102 727 213 11 17 chr11 22994345 22994519 -125788953 + L1P LINE L1 4825 4997 -1149 309 276 35 35 chr11 22994834 22994950 -125788522 + MIR SINE MIR 82 197 -65 457 293 56 84 chr11 22995308 22995439 -125788033 + MIR SINE MIR 18 140 -122 378 0 0 0 chr11 22995439 22995481 -125787991 + (TG)n Simple_repeat Simple_repeat 1 42 0 457 293 56 84 chr11 22995481 22995598 -125787874 + MIR SINE MIR 140 259 -3 830 93 0 0 chr11 22996922 22997030 -125786442 - AluY SINE Alu -203 108 1 363 309 72 7 chr11 22997063 22997202 -125786270 - HAL1 LINE L1 -770 1737 1590 555 204 78 28 chr11 22997212 22997420 -125786052 - MLT1H LTR MaLR -24 602 311 256 240 280 24 chr11 22997535 22997660 -125785812 - MLT1H LTR MaLR -392 157 1 248 345 23 0 chr11 22998662 22998749 -125784723 - MLT-int LTR MaLR -1209 526 438 1627 159 26 4 chr11 22999016 22999286 -125784186 + AluSx SINE Alu 22 297 -15 286 364 50 16 chr11 22999379 22999500 -125783972 + L2 LINE L2 3148 3272 0 282 279 211 0 chr11 22999939 23000043 -125783429 - MIR SINE MIR -89 173 48 189 0 0 0 chr11 23000071 23000092 -125783380 + (A)n Simple_repeat Simple_repeat 1 21 0 289 270 145 54 chr11 23001322 23001618 -125781854 - L2 LINE L2 0 3313 2991 1597 117 26 0 chr11 23001620 23001885 -125781587 + L1MA3 LINE L1 6033 6304 -1 278 250 21 42 chr11 23003470 23003566 -125779906 + LTR67 LTR ERVL 432 525 -32 21 36 0 0 chr11 23003703 23003731 -125779741 + AT_rich Low_complexity Low_complexity 1 28 0 508 296 164 0 chr11 23005266 23005425 -125778047 - MER5A DNA MER1_type -1 188 4 576 337 28 35 chr11 23005472 23005727 -125777745 + MIR SINE MIR 10 262 0 22 0 0 0 chr11 23007509 23007531 -125775941 + AT_rich Low_complexity Low_complexity 1 22 0 567 320 61 48 chr11 23007593 23008034 -125775438 + L1M4 LINE L1 4384 4830 -1316 1519 148 3 33 chr11 23008067 23008370 -125775102 + L1PA13 LINE L1 5870 6163 0 2665 163 38 4 chr11 23008466 23008968 -125774504 + L1MA8 LINE L1 5732 6249 -42 2127 184 35 11 chr11 23008969 23009399 -125774073 + MSTB LTR MaLR 1 425 -1 23 54 0 0 chr11 23009871 23009908 -125773564 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr11 23011116 23011152 -125772320 + AT_rich Low_complexity Low_complexity 1 36 0 182 321 24 12 chr11 23013531 23013615 -125769857 + L2 LINE L2 3153 3237 -76 315 0 0 0 chr11 23014349 23014384 -125769088 + (TG)n Simple_repeat Simple_repeat 2 36 0 2060 172 40 27 chr11 23015606 23016151 -125767321 - MLT2A2 LTR ERVL 0 554 1 230 281 35 35 chr11 23017329 23017443 -125766029 - LTR67 LTR ERVL -5 552 439 219 139 0 0 chr11 23017767 23017803 -125765669 + (TTC)n Simple_repeat Simple_repeat 2 37 0 348 294 59 8 chr11 23017853 23017972 -125765500 - MIR SINE MIR -1 261 137 605 129 207 9 chr11 23018072 23018188 -125765284 + MLT1A1 LTR MaLR 1 139 -226 1151 189 120 21 chr11 23018269 23018560 -125764912 - MER31B LTR ERV1 -143 323 4 2145 129 0 0 chr11 23018859 23019170 -125764302 + AluSq SINE Alu 3 313 0 22 35 0 0 chr11 23019198 23019227 -125764245 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 23019733 23019756 -125763716 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr11 23020100 23020132 -125763340 + AT_rich Low_complexity Low_complexity 1 32 0 225 299 47 9 chr11 23020145 23020252 -125763220 - HAL1b LINE L1 -41 1307 1197 623 292 160 19 chr11 23020629 23020960 -125762512 - LTR33A LTR ERVL -153 370 25 247 253 142 31 chr11 23020991 23021153 -125762319 - HAL1b LINE L1 -381 967 788 306 0 0 0 chr11 23021190 23021224 -125762248 + (CA)n Simple_repeat Simple_repeat 2 35 0 2299 81 0 10 chr11 23021340 23021647 -125761825 + AluY SINE Alu 1 304 -7 356 230 71 0 chr11 23021684 23021797 -125761675 - HAL1b LINE L1 -772 576 456 652 264 78 74 chr11 23021820 23022372 -125761100 - HAL1b LINE L1 -701 647 94 457 115 23 11 chr11 23022661 23022748 -125760724 + CT-rich Low_complexity Low_complexity 2 89 0 2049 106 7 10 chr11 23022865 23023158 -125760314 + AluY SINE Alu 1 292 -19 530 306 70 15 chr11 23023247 23023485 -125759987 + MIR SINE MIR 2 252 -10 2251 121 11 11 chr11 23024746 23025101 -125758371 + THE1A LTR MaLR 1 355 0 225 280 53 13 chr11 23025426 23025501 -125757971 + MIR SINE MIR 128 205 -57 3085 189 77 31 chr11 23025929 23026711 -125756761 + L1MDa LINE L1 1108 1935 -4605 1999 85 3 59 chr11 23026711 23027064 -125756408 + AluSq SINE Alu 1 313 0 3085 189 77 31 chr11 23027064 23027152 -125756320 + L1MDa LINE L1 1935 2018 -4522 25 31 0 0 chr11 23027350 23027382 -125756090 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 23027975 23027998 -125755474 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 23028767 23028801 -125754671 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr11 23029188 23029211 -125754261 + AT_rich Low_complexity Low_complexity 1 23 0 303 388 81 37 chr11 23029597 23030098 -125753374 - L2 LINE L2 -25 3247 2716 2803 269 118 49 chr11 23030136 23030847 -125752625 - L2 LINE L2 -4 3309 2649 4946 144 20 47 chr11 23030847 23031784 -125751688 + L1MC1 LINE L1 5422 6333 0 2803 269 118 49 chr11 23031784 23032597 -125750875 - L2 LINE L2 -664 2649 1699 10464 42 1 0 chr11 23032597 23034646 -125748826 + L1PA4 LINE L1 4102 6152 -3 442 211 51 143 chr11 23034655 23034892 -125748580 - MER69 DNA AcHobo -295 2231 2017 2226 104 3 3 chr11 23035256 23035553 -125747919 - AluSx SINE Alu -15 297 1 1972 72 4 0 chr11 23036412 23036677 -125746795 - L1PA13 LINE L1 -4 6159 5894 314 230 324 7 chr11 23036714 23036853 -125746619 + ERVL LTR ERVL 1782 1964 -3800 313 354 68 41 chr11 23037232 23037673 -125745799 + ERVL LTR ERVL 2506 2958 -2806 305 321 26 0 chr11 23037683 23037830 -125745642 + ERVL LTR ERVL 3302 3490 -2234 493 122 31 31 chr11 23037836 23037934 -125745538 + MER4A LTR ERV1 1 98 -566 1746 137 3 77 chr11 23037934 23038307 -125745165 + MER4A LTR ERV1 261 664 0 27 73 0 0 chr11 23040300 23040355 -125743117 + AT_rich Low_complexity Low_complexity 1 55 0 2710 162 25 0 chr11 23041293 23041780 -125741692 - L1PA16 LINE L1 -4 6162 5664 25 31 0 0 chr11 23041966 23041998 -125741474 + AT_rich Low_complexity Low_complexity 1 32 0 682 78 0 0 chr11 23042150 23042240 -125741232 - 5S rRNA rRNA -31 90 1 217 234 0 0 chr11 23042385 23042432 -125741040 - MIR SINE MIR -109 153 107 234 295 115 13 chr11 23042997 23043075 -125740397 + MIR SINE MIR 21 106 -156 757 174 10 103 chr11 23043117 23043243 -125740229 + MER5B DNA MER1_type 2 105 -73 1407 226 3 10 chr11 23043243 23043548 -125739924 - AluJb SINE Alu -9 303 1 757 174 10 103 chr11 23043548 23043616 -125739856 + MER5B DNA MER1_type 105 178 0 27 0 0 0 chr11 23043700 23043727 -125739745 + AT_rich Low_complexity Low_complexity 1 27 0 1911 150 0 38 chr11 23043821 23044135 -125739337 - AluSx SINE Alu -10 302 1 22 0 0 0 chr11 23044138 23044160 -125739312 + AT_rich Low_complexity Low_complexity 1 22 0 665 171 8 16 chr11 23045406 23045529 -125737943 - FRAM SINE Alu -33 143 22 1457 157 4 24 chr11 23045699 23045954 -125737518 + AluJb SINE Alu 1 250 -62 28 29 0 0 chr11 23046889 23046924 -125736548 + AT_rich Low_complexity Low_complexity 1 35 0 1940 125 14 4 chr11 23047005 23047305 -125736167 + AluSx SINE Alu 1 303 0 275 131 115 16 chr11 23047677 23047738 -125735734 - Alu SINE Alu -2 300 234 1584 101 140 0 chr11 23047738 23047966 -125735506 - AluSc SINE Alu -49 260 1 22 0 0 0 chr11 23048585 23048607 -125734865 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr11 23048680 23048741 -125734731 + AT_rich Low_complexity Low_complexity 1 61 0 303 298 48 12 chr11 23049635 23049719 -125733753 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23049933 23050049 -125733423 + AluJ SINE Alu 1 117 -185 521 185 23 116 chr11 23050049 23050122 -125733350 + AluJb SINE Alu 92 141 -171 1890 152 41 22 chr11 23050122 23050490 -125732982 - THE1C LTR MaLR 0 375 1 521 185 23 116 chr11 23050490 23050589 -125732883 + AluJb SINE Alu 141 248 -64 11463 27 1 1 chr11 23050862 23052592 -125730880 - L1P1 LINE L1 -408 5747 4019 5529 42 0 0 chr11 23052590 23053275 -125730197 + L1P LINE L1 3197 3881 -2265 * 852 236 36 36 chr11 23053276 23053581 -125729891 + MER69 DNA AcHobo 2222 2526 0 580 247 48 32 chr11 23054146 23054332 -125729140 + MIR SINE MIR 72 260 -2 356 293 111 20 chr11 23054566 23054764 -125728708 + L2 LINE L2 3098 3313 0 2057 130 3 0 chr11 23056061 23056361 -125727111 + AluSx SINE Alu 1 301 -11 935 244 101 30 chr11 23058703 23059100 -125724372 - Charlie4a DNA MER1_type -8 500 76 324 0 0 0 chr11 23059101 23059137 -125724335 + (TA)n Simple_repeat Simple_repeat 2 37 0 246 231 39 26 chr11 23059467 23059545 -125723927 - MIR SINE MIR -1 261 183 916 340 1 13 chr11 23059547 23059923 -125723549 + L2 LINE L2 2699 3070 -243 606 360 109 37 chr11 23060397 23060846 -125722626 - L2 LINE L2 -244 3028 2516 6327 28 3 0 chr11 23060846 23061592 -125721880 - L1PA3 LINE L1 0 6155 5408 606 360 109 37 chr11 23061592 23061760 -125721712 - L2 LINE L2 -756 2516 2362 637 261 142 9 chr11 23062891 23063117 -125720355 - MIR SINE MIR -5 257 2 444 338 40 14 chr11 23063164 23063312 -125720160 - L2 LINE L2 -4 3268 3117 5042 33 0 5 chr11 23064085 23064687 -125718785 + L1PA3 LINE L1 5556 6154 -1 207 0 0 0 chr11 23064692 23064715 -125718757 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 149 0 0 chr11 23064984 23065031 -125718441 + (TG)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr11 23065138 23065169 -125718303 + AT_rich Low_complexity Low_complexity 1 31 0 16840 164 34 17 chr11 23065456 23067303 -125716169 + L1PBa LINE L1 1 1815 -5047 1773 157 43 3 chr11 23067303 23067603 -125715869 + AluSx SINE Alu 1 312 0 16840 164 34 17 chr11 23067603 23069692 -125713780 + L1PBa LINE L1 1815 4032 -2830 2175 118 3 3 chr11 23069692 23069996 -125713476 + AluSg SINE Alu 4 307 -3 16840 164 34 17 chr11 23069996 23070868 -125712604 + L1PBa LINE L1 4032 4888 -1974 1265 201 14 17 chr11 23070869 23071162 -125712310 + AluSx SINE Alu 4 295 -17 3138 27 5 0 chr11 23071402 23071819 -125711653 + L1PA4 LINE L1 5765 6183 0 560 301 64 23 chr11 23071838 23072057 -125711415 - L2 LINE L2 -1689 1625 1398 256 305 39 47 chr11 23072064 23072192 -125711280 - L2 LINE L2 -614 2700 2574 226 324 0 0 chr11 23072357 23072425 -125711047 - L2 LINE L2 -803 2511 2444 3894 109 3 33 chr11 23072507 23073142 -125710330 - L1MA1 LINE L1 0 7721 7106 4738 115 5 0 chr11 23073145 23073812 -125709660 - THE1B-int LTR MaLR -910 670 1 1617 135 65 117 chr11 23073812 23074196 -125709276 - THE1B LTR MaLR 0 364 1 2130 114 37 14 chr11 23074197 23074547 -125708925 - L1MA1 LINE L1 -658 7063 6706 1431 183 70 18 chr11 23074554 23074838 -125708634 - MER1B DNA MER1_type -40 299 1 19697 178 41 12 chr11 23074838 23078078 -125705394 - L1MA1 LINE L1 -857 6708 3563 183 42 0 0 chr11 23078078 23078102 -125705370 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 19697 178 41 12 chr11 23078102 23081373 -125702099 - L1MA1 LINE L1 -4002 3563 13 1138 286 70 40 chr11 23081383 23081799 -125701673 - L2 LINE L2 -954 2360 1923 1669 139 92 47 chr11 23081799 23081987 -125701485 + THE1C LTR MaLR 1 179 -196 327 49 0 0 chr11 23081987 23082028 -125701444 + (TC)n Simple_repeat Simple_repeat 1 41 0 1669 139 92 47 chr11 23082028 23082198 -125701274 + THE1C LTR MaLR 179 375 0 1138 286 70 40 chr11 23082198 23082308 -125701164 - L2 LINE L2 -1391 1923 1818 343 297 97 60 chr11 23082527 23082961 -125700511 + L1MEd LINE L1 787 1236 -5136 579 307 63 37 chr11 23083155 23083455 -125700017 - MLT1J LTR MaLR -196 315 8 515 321 108 44 chr11 23083464 23084044 -125699428 + L1MEd LINE L1 1290 1811 -4573 308 286 135 22 chr11 23084364 23084542 -125698930 + L1MEd LINE L1 2643 2840 -3542 303 311 97 10 chr11 23084679 23084782 -125698690 - L2 LINE L2 -1 3271 3160 280 269 151 8 chr11 23085635 23085754 -125697718 - MIR3 SINE MIR -31 177 42 2224 86 10 3 chr11 23085771 23086061 -125697411 + AluSg SINE Alu 1 292 -18 210 310 17 0 chr11 23088326 23088384 -125695088 - L2 LINE L2 -7 3265 3207 1088 97 0 0 chr11 23089009 23089154 -125694318 - AluSq/x SINE Alu -166 147 3 180 380 110 0 chr11 23089319 23089419 -125694053 - L2 LINE L2 0 3272 3162 1996 132 0 43 chr11 23089545 23089871 -125693601 + AluSx SINE Alu 1 312 0 26 30 0 0 chr11 23090590 23090623 -125692849 + AT_rich Low_complexity Low_complexity 1 33 0 4522 114 4 47 chr11 23090700 23091446 -125692026 - L1PB3 LINE L1 0 6154 5441 6976 210 29 47 chr11 23091447 23092113 -125691359 - L1P5 LINE L1 -579 5632 4956 2549 51 0 0 chr11 23092113 23092428 -125691044 - L1PA5 LINE L1 -4 6150 5836 6976 210 29 47 chr11 23092428 23094297 -125689175 - L1P5 LINE L1 -1255 4956 3295 5861 188 18 12 chr11 23094306 23096068 -125687404 - L1P5 LINE L1 -4254 1950 171 2223 148 3 24 chr11 23096068 23096440 -125687032 - THE1B LTR MaLR 0 364 1 5861 188 18 12 chr11 23096440 23096613 -125686859 - L1P5 LINE L1 -6033 171 1 3213 272 26 91 chr11 23096581 23098326 -125685146 - L1PBa LINE L1 -5227 1636 5 * 223 245 19 0 chr11 23098427 23098480 -125684992 + MIR SINE MIR 157 210 -52 284 259 54 36 chr11 23098546 23098658 -125684814 + MLT1L LTR MaLR 87 200 -415 261 203 60 8 chr11 23098888 23099021 -125684451 + (TA)n Simple_repeat Simple_repeat 1 140 0 * 282 180 52 35 chr11 23098933 23099105 -125684367 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 377 89 30 75 chr11 23099137 23099574 -125683898 + (TTATA)n Simple_repeat Simple_repeat 1 417 0 230 88 44 62 chr11 23099586 23099699 -125683773 + (TTATA)n Simple_repeat Simple_repeat 3 113 0 239 81 23 81 chr11 23099701 23099788 -125683684 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 * 399 200 48 6 chr11 23099741 23099906 -125683566 + (TA)n Simple_repeat Simple_repeat 2 173 0 2148 131 0 0 chr11 23100423 23100721 -125682751 - AluSx SINE Alu -14 298 1 1238 222 136 11 chr11 23101218 23101570 -125681902 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr11 23101768 23101796 -125681676 + AT_rich Low_complexity Low_complexity 1 28 0 422 279 43 53 chr11 23103044 23103252 -125680220 + LTR33 LTR ERVL 15 220 -301 328 172 0 0 chr11 23103279 23103337 -125680135 + L1MC4 LINE L1 6648 6705 -1337 323 281 22 0 chr11 23103313 23103402 -125680070 - L1MC4 LINE L1 -1339 6703 6613 * 225 119 0 0 chr11 23103402 23103444 -125680028 + (TA)n Simple_repeat Simple_repeat 1 42 0 1280 56 12 0 chr11 23103444 23103606 -125679866 - L1PA5 LINE L1 -9 6145 5982 470 263 40 13 chr11 23103672 23103824 -125679648 + LTR33 LTR ERVL 366 521 0 1678 174 23 10 chr11 23106706 23107005 -125676467 - AluSx SINE Alu -9 303 1 233 191 16 0 chr11 23107297 23107309 -125676163 + (TA)n Simple_repeat Simple_repeat 2 12 -53 2017 111 18 4 chr11 23107309 23107589 -125675883 + AluSc SINE Alu 1 284 -25 233 191 16 0 chr11 23107589 23107639 -125675833 + (TA)n Simple_repeat Simple_repeat 12 65 0 2293 85 3 0 chr11 23107911 23108205 -125675267 - AluSp SINE Alu 0 313 19 325 126 23 35 chr11 23108913 23109000 -125674472 + CT-rich Low_complexity Low_complexity 2 87 0 42421 36 22 2 chr11 23109007 23115022 -125668450 - L1PA3 LINE L1 -9 6146 4 1047 54 11 49 chr11 23115028 23115213 -125668259 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 188 278 56 0 chr11 23115458 23115512 -125667960 + MIR SINE MIR 175 231 -31 808 254 154 28 chr11 23115834 23116319 -125667153 + MLT1G LTR MaLR 1 590 0 294 143 0 0 chr11 23116442 23116491 -125666981 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1531 219 27 0 chr11 23116493 23116790 -125666682 - AluJo SINE Alu -1 311 7 189 294 229 0 chr11 23117425 23117534 -125665938 + L2 LINE L2 3173 3306 -7 1897 194 45 5 chr11 23119243 23119620 -125663852 - MER74C LTR ERVL 0 460 69 2263 108 3 10 chr11 23120123 23120429 -125663043 - AluSx SINE Alu -8 304 1 594 278 54 40 chr11 23120476 23120576 -125662896 + L2 LINE L2 2287 2384 -930 195 42 0 0 chr11 23120576 23120600 -125662872 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 594 278 54 40 chr11 23120600 23120722 -125662750 + L2 LINE L2 2384 2512 -802 1855 182 8 13 chr11 23120930 23121312 -125662160 + Ricksha DNA DNA 1 489 -1107 523 199 0 15 chr11 23121905 23122041 -125661431 + GA-rich Low_complexity Low_complexity 3 136 0 259 284 0 40 chr11 23122119 23122193 -125661279 + MIR SINE MIR 37 107 -155 180 277 185 0 chr11 23122205 23122270 -125661202 + L2 LINE L2 3147 3223 -49 579 300 48 40 chr11 23122493 23122743 -125660729 - MIR SINE MIR -4 258 7 249 83 0 0 chr11 23123413 23123449 -125660023 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 216 358 55 107 chr11 23123460 23123806 -125659666 - L2 LINE L2 -41 3231 2904 432 200 52 96 chr11 23123961 23124191 -125659281 - MER112 DNA MER1_type -40 220 1 316 286 48 12 chr11 23124528 23124612 -125658860 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23124826 23124942 -125658530 + AluJ SINE Alu 1 117 -185 634 171 116 93 chr11 23124942 23125015 -125658457 + AluJb SINE Alu 92 162 -150 1893 158 41 19 chr11 23125015 23125382 -125658090 - THE1C LTR MaLR 0 375 1 634 171 116 93 chr11 23125382 23125524 -125657948 + AluJb SINE Alu 162 312 0 226 329 151 40 chr11 23133318 23133543 -125649929 - MIR SINE MIR -2 260 11 1015 76 0 15 chr11 23136327 23136459 -125647013 + AluSq/x SINE Alu 3 132 -181 340 285 12 1 chr11 23136824 23136920 -125646552 + MIR SINE MIR 17 113 -95 210 91 0 0 chr11 23136921 23136954 -125646518 + (T)n Simple_repeat Simple_repeat 1 33 0 186 310 23 35 chr11 23137819 23137906 -125645566 - MIR SINE MIR -90 172 87 187 271 51 17 chr11 23138564 23138623 -125644849 - MIR SINE MIR -110 152 92 1158 209 32 4 chr11 23139132 23139385 -125644087 + MIR SINE MIR 3 262 0 687 271 68 28 chr11 23139469 23139720 -125643752 + MIR SINE MIR 2 262 0 472 333 146 27 chr11 23139716 23140230 -125643242 - L2 LINE L2 -33 3280 2716 * 614 211 43 37 chr11 23140428 23140589 -125642883 + MIR3 SINE MIR 32 193 -15 22 0 0 0 chr11 23141068 23141090 -125642382 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 23141602 23141631 -125641841 + AT_rich Low_complexity Low_complexity 1 29 0 448 277 46 50 chr11 23143760 23144020 -125639452 + MIR SINE MIR 2 260 -2 25 83 0 0 chr11 23144765 23144825 -125638647 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr11 23144898 23144920 -125638552 + AT_rich Low_complexity Low_complexity 1 22 0 1141 124 21 11 chr11 23145541 23145727 -125637745 + AluSc SINE Alu 1 188 -121 301 67 0 0 chr11 23146029 23146074 -125637398 + Alu SINE Alu 257 301 0 9020 180 26 17 chr11 23146093 23146957 -125636515 + L1PA16 LINE L1 3289 4144 -2022 1679 180 3 13 chr11 23146957 23147268 -125636204 + AluSx SINE Alu 4 311 -1 9020 180 26 17 chr11 23147268 23149245 -125634227 + L1PA16 LINE L1 4144 6134 -32 180 0 0 0 chr11 23149256 23149276 -125634196 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1550 179 45 22 chr11 23149639 23149997 -125633475 - L1MA7 LINE L1 -9 6282 5917 2585 146 86 7 chr11 23149997 23150544 -125632928 - L1MC1 LINE L1 -8 6325 5652 194 222 9 111 chr11 23151641 23151749 -125631723 + MIR SINE MIR 113 209 -53 199 359 0 26 chr11 23151819 23151897 -125631575 - L2 LINE L2 -9 3263 3188 770 178 156 22 chr11 23152172 23152352 -125631120 - MER3 DNA MER1_type -1 208 5 259 311 52 57 chr11 23152519 23152712 -125630760 - MIR SINE MIR -43 219 28 432 294 91 7 chr11 23154823 23155099 -125628373 - L1MC4a LINE L1 -1928 5880 5582 1515 206 21 4 chr11 23156036 23156317 -125627155 - AluJb SINE Alu -25 287 2 36 70 0 0 chr11 23159122 23159193 -125624279 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr11 23159465 23159486 -125623986 + AT_rich Low_complexity Low_complexity 1 21 0 412 352 39 6 chr11 23160399 23160578 -125622894 + L1ME LINE L1 5486 5670 -451 2360 78 3 0 chr11 23162198 23162505 -125620967 + AluY SINE Alu 1 308 -3 32 26 0 0 chr11 23162853 23162892 -125620580 + AT_rich Low_complexity Low_complexity 1 39 0 229 398 0 9 chr11 23164606 23164714 -125618758 - MIR SINE MIR -134 128 22 414 57 0 0 chr11 23165376 23165429 -125618043 + (CAT)n Simple_repeat Simple_repeat 2 54 0 461 274 170 0 chr11 23165544 23165697 -125617775 - MER5A DNA MER1_type 0 189 11 23 0 0 0 chr11 23165922 23165945 -125617527 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 23167188 23167223 -125616249 + AT_rich Low_complexity Low_complexity 1 35 0 406 297 117 36 chr11 23167226 23167448 -125616024 - MIR SINE MIR -15 247 8 186 43 0 0 chr11 23167827 23167850 -125615622 + (T)n Simple_repeat Simple_repeat 1 23 0 231 338 15 0 chr11 23172666 23172734 -125610738 - MIR SINE MIR -108 100 32 216 300 75 25 chr11 23172987 23173107 -125610365 - MIR SINE MIR -27 235 110 186 269 77 13 chr11 23173208 23173286 -125610186 - MIR SINE MIR -84 178 96 7408 211 113 19 chr11 23173307 23175467 -125608005 + L1PA16 LINE L1 3071 5440 -726 1417 179 10 51 chr11 23175467 23175786 -125607686 + AluJb SINE Alu 1 307 0 4095 124 29 3 chr11 23175791 23176442 -125607030 + L1PA16 LINE L1 5490 6157 -9 24 0 0 0 chr11 23176442 23176466 -125607006 + AT_rich Low_complexity Low_complexity 1 24 0 287 295 187 22 chr11 23177772 23177911 -125605561 + MIR3 SINE MIR 38 199 -9 22 0 0 0 chr11 23179592 23179614 -125603858 + AT_rich Low_complexity Low_complexity 1 22 0 203 313 83 62 chr11 23180423 23180615 -125602857 + L2 LINE L2 1817 2012 -1302 309 250 73 98 chr11 23181696 23181860 -125601612 - MER103 DNA DNA -4 162 3 230 260 0 21 chr11 23182220 23182316 -125601156 + GA-rich Low_complexity Low_complexity 2 95 0 191 35 0 35 chr11 23185876 23185905 -125597567 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2438 91 3 0 chr11 23188212 23188520 -125594952 + AluSp SINE Alu 2 310 -3 1486 133 26 89 chr11 23189597 23189867 -125593605 - AluSx SINE Alu -53 259 7 1003 184 27 11 chr11 23189881 23190066 -125593406 + MER5A DNA MER1_type 1 188 -1 569 314 63 10 chr11 23191279 23191486 -125591986 - MIR SINE MIR -43 219 2 356 221 39 10 chr11 23191490 23191594 -125591878 + MER103 DNA DNA 58 164 -2 241 333 61 50 chr11 23191889 23192069 -125591403 - MIR SINE MIR -32 230 49 330 26 0 0 chr11 23193203 23193242 -125590230 + (CA)n Simple_repeat Simple_repeat 1 39 0 28 29 0 0 chr11 23193749 23193784 -125589688 + AT_rich Low_complexity Low_complexity 1 35 0 2237 76 0 7 chr11 23193863 23194151 -125589321 + AluY SINE Alu 4 289 -22 226 128 0 0 chr11 23194211 23194250 -125589222 - MADE1 DNA Mariner -37 43 5 191 167 24 0 chr11 23194757 23194799 -125588673 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 4013 221 19 5 chr11 23195119 23196079 -125587393 + L1 LINE L1 2321 3293 -2853 2341 85 7 0 chr11 23196093 23196387 -125587085 + AluY SINE Alu 4 299 -12 2109 156 48 16 chr11 23196392 23196771 -125586701 - MSTB LTR MaLR -35 391 1 231 143 0 48 chr11 23196875 23196917 -125586555 + Charlie8 DNA MER1_type 309 348 -2069 312 294 78 10 chr11 23196919 23197021 -125586451 - MIR SINE MIR -148 114 6 200 348 7 58 chr11 23197725 23197863 -125585609 - MIR SINE MIR -61 201 71 26 64 0 0 chr11 23197870 23197917 -125585555 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 23200165 23200186 -125583286 + AT_rich Low_complexity Low_complexity 1 21 0 333 80 0 0 chr11 23200489 23200539 -125582933 - MADE1 DNA Mariner 0 80 31 2385 125 3 5 chr11 23200541 23200917 -125582555 + L1PA10 LINE L1 5793 6167 -1 24 32 0 0 chr11 23202194 23202225 -125581247 + AT_rich Low_complexity Low_complexity 1 31 0 1745 53 0 0 chr11 23203981 23204190 -125579282 - AluY SINE Alu -8 303 95 2350 91 0 0 chr11 23204588 23204885 -125578587 - AluSq SINE Alu -16 297 1 294 309 13 81 chr11 23205396 23205545 -125577927 - L2 LINE L2 -217 3055 2917 360 298 114 30 chr11 23205592 23205854 -125577618 - L2 LINE L2 -387 2927 2644 244 250 100 0 chr11 23206710 23206770 -125576702 - L2 LINE L2 -25 3288 3223 668 213 161 29 chr11 23206821 23206995 -125576477 - MER58A DNA MER1_type -27 197 1 256 313 0 0 chr11 23208020 23208084 -125575388 - L2 LINE L2 -4 3309 3246 242 327 114 53 chr11 23208248 23208661 -125574811 - L2 LINE L2 -417 2897 2460 310 298 123 9 chr11 23208750 23208864 -125574608 + MIR SINE MIR 48 174 -88 535 301 145 44 chr11 23208866 23209232 -125574240 - L2 LINE L2 -18 3295 2893 214 191 0 0 chr11 23209630 23209672 -125573800 + T-rich Low_complexity Low_complexity 1 42 0 2290 107 0 3 chr11 23210007 23210315 -125573157 + AluSq SINE Alu 1 307 -6 192 281 0 112 chr11 23210607 23210696 -125572776 + L2 LINE L2 3231 3309 -4 1911 110 11 4 chr11 23210808 23211072 -125572400 + AluSc SINE Alu 1 266 -43 373 141 28 14 chr11 23211096 23211167 -125572305 + Alu SINE Alu 228 299 -1 739 259 5 0 chr11 23262790 23262995 -125520477 - L1P LINE L1 -860 5286 5081 1396 73 10 21 chr11 23262999 23263191 -125520281 + MER50-int LTR ERV1 700 889 -6316 2161 208 28 6 chr11 23263191 23263697 -125519775 - L1P LINE L1 -1057 5089 4573 234 265 108 20 chr11 23263919 23264021 -125519451 + MIR SINE MIR 60 170 -92 302 355 14 7 chr11 23264080 23264221 -125519251 - L3 LINE CR1 -380 1197 1056 312 255 147 34 chr11 23266375 23266496 -125516976 - MER5B DNA MER1_type -4 185 38 374 252 122 48 chr11 23266688 23266835 -125516637 + MIR SINE MIR 57 214 -48 233 287 19 37 chr11 23266881 23266989 -125516483 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 189 107 0 0 chr11 23267053 23267081 -125516391 + (A)n Simple_repeat Simple_repeat 1 28 0 761 190 95 62 chr11 23267824 23268035 -125515437 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr11 23268074 23268095 -125515377 + AT_rich Low_complexity Low_complexity 1 21 0 465 298 24 67 chr11 23268193 23268454 -125515018 + MIR SINE MIR 14 262 0 267 286 43 0 chr11 23268449 23268519 -125514953 - L2 LINE L2 -6 3266 3194 * 24 0 0 0 chr11 23268567 23268591 -125514881 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 23268759 23268782 -125514690 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 372 22 0 0 chr11 23268781 23268826 -125514646 + (CA)n Simple_repeat Simple_repeat 2 46 0 242 158 24 73 chr11 23268831 23268913 -125514559 + L1MC4 LINE L1 6626 6703 -1339 2427 65 0 13 chr11 23268932 23269242 -125514230 - AluY SINE Alu -5 306 1 466 34 0 0 chr11 23269787 23269846 -125513626 + L1PA6 LINE L1 6091 6149 -5 199 301 90 38 chr11 23269874 23270007 -125513465 + L2 LINE L2 2909 3048 -224 270 68 45 0 chr11 23270068 23270112 -125513360 - AluSc SINE Alu -1 298 253 1019 87 0 0 chr11 23270113 23270240 -125513232 - AluSq/x SINE Alu -185 127 1 22 70 0 0 chr11 23270287 23270330 -125513142 + AT_rich Low_complexity Low_complexity 1 43 0 2123 127 3 13 chr11 23272470 23272784 -125510688 + AluSq SINE Alu 1 311 -2 914 216 76 113 chr11 23273694 23274179 -125509293 - HAL1 LINE L1 0 2507 2041 366 292 17 25 chr11 23274448 23274568 -125508904 - L2 LINE L2 0 3313 3195 661 201 50 22 chr11 23274590 23274769 -125508703 - MER53 DNA DNA -5 184 1 1328 308 42 19 chr11 23274806 23275429 -125508043 - L2 LINE L2 -151 3162 2530 456 289 103 64 chr11 23275549 23276005 -125507467 - HAL1 LINE L1 -1987 520 47 194 301 97 39 chr11 23277066 23277169 -125506303 + MIR SINE MIR 81 189 -73 532 315 55 5 chr11 23277488 23277688 -125505784 + MIR SINE MIR 4 213 -49 503 249 83 12 chr11 23277754 23277923 -125505549 - MIR SINE MIR -15 247 67 201 300 0 0 chr11 23278935 23278985 -125504487 + CT-rich Low_complexity Low_complexity 2 51 0 270 317 50 10 chr11 23279281 23279382 -125504090 - L2 LINE L2 0 3272 3168 183 80 0 0 chr11 23279377 23279402 -125504070 + L2 LINE L2 3283 3307 -6 * 256 234 0 0 chr11 23279568 23279615 -125503857 - MER91 DNA MER1_type -93 47 1 21 0 0 0 chr11 23280928 23280949 -125502523 + AT_rich Low_complexity Low_complexity 1 21 0 2251 58 6 37 chr11 23281621 23281946 -125501526 + L1PA5 LINE L1 5840 6154 0 1687 173 65 0 chr11 23282244 23282568 -125500904 + MER7A DNA MER2_type 2 344 -2 434 280 3 0 chr11 23283018 23283136 -125500336 + MIR SINE MIR 50 145 -63 269 355 74 32 chr11 23283582 23284080 -125499392 - L2 LINE L2 -1037 2277 1759 4189 166 5 34 chr11 23284709 23285099 -125498373 - L1MA8 LINE L1 -2 6289 5889 3384 98 46 60 chr11 23285099 23285661 -125497811 - MER41A LTR ERV1 0 554 1 4189 166 5 34 chr11 23285661 23286102 -125497370 - L1MA8 LINE L1 -402 5889 5482 3020 137 18 2 chr11 23287065 23287554 -125495918 - LOR1a LTR ERV1 0 497 1 1646 174 166 39 chr11 23288603 23288956 -125494516 - LOR1b LTR ERV1 0 461 154 214 39 0 0 chr11 23288956 23288982 -125494490 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2129 104 0 21 chr11 23288982 23289271 -125494201 - AluSx SINE Alu -1 308 1 1646 174 166 39 chr11 23289271 23289325 -125494147 - LOR1b LTR ERV1 -306 155 1 3316 124 12 2 chr11 23289490 23289982 -125493490 - LOR1a LTR ERV1 0 497 1 22 35 0 0 chr11 23292962 23292991 -125490481 + AT_rich Low_complexity Low_complexity 1 29 0 1632 230 74 18 chr11 23293235 23293692 -125489780 - MLT1D LTR MaLR -2 503 21 234 339 129 54 chr11 23294160 23294532 -125488940 + L3 LINE CR1 1134 1533 -44 239 292 0 28 chr11 23294749 23294821 -125488651 - MIR SINE MIR -57 151 82 230 261 87 0 chr11 23294917 23294986 -125488486 - MIR3 SINE MIR -11 197 123 992 222 104 28 chr11 23295223 23295595 -125487877 - L1ME LINE L1 -545 5621 5230 212 128 0 21 chr11 23295635 23295682 -125487790 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 1984 124 28 3 chr11 23295710 23295992 -125487480 - AluSx SINE Alu -23 289 1 1567 216 118 14 chr11 23296003 23296442 -125487030 - L1ME LINE L1 -957 5189 4705 5111 173 149 11 chr11 23296470 23298246 -125485226 - L1PA16 LINE L1 -9 6157 4114 904 234 190 5 chr11 23298235 23298641 -125484831 - L1ME LINE L1 -1434 4712 4232 * 2326 91 3 3 chr11 23298967 23299275 -125484197 + AluSp SINE Alu 1 308 -5 186 133 0 0 chr11 23300508 23300538 -125482934 + (TG)n Simple_repeat Simple_repeat 2 31 0 283 96 39 0 chr11 23300576 23300628 -125482844 + (TA)n Simple_repeat Simple_repeat 1 54 0 1833 170 49 95 chr11 23302846 23303218 -125480254 + MER70A LTR ERVL 37 386 -86 1447 168 24 54 chr11 23303218 23303516 -125479956 - AluJb SINE Alu -23 289 1 1833 170 49 95 chr11 23303516 23303595 -125479877 + MER70A LTR ERVL 386 467 -5 180 77 0 0 chr11 23303639 23303665 -125479807 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 298 185 65 0 chr11 23303893 23303985 -125479487 + L1MC4 LINE L1 6606 6703 -1339 242 226 0 47 chr11 23303905 23304011 -125479461 - L1MC4 LINE L1 -1339 6703 6603 * 424 253 88 47 chr11 23304224 23304394 -125479078 + MER5B DNA MER1_type 2 178 0 225 178 0 0 chr11 23305798 23305843 -125477629 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 239 315 14 27 chr11 23306056 23306129 -125477343 + L2 LINE L2 3188 3259 -54 21 71 0 0 chr11 23306443 23306485 -125476987 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr11 23307111 23307135 -125476337 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr11 23307365 23307411 -125476061 + AT_rich Low_complexity Low_complexity 1 46 0 349 286 196 28 chr11 23307864 23308119 -125475353 - L2 LINE L2 -52 3261 2964 595 220 0 0 chr11 23308447 23308588 -125474884 + MER53 DNA DNA 37 177 -12 228 224 41 31 chr11 23309309 23309407 -125474065 + (CCCCG)n Simple_repeat Simple_repeat 1 99 0 417 308 182 0 chr11 23309950 23310093 -125473379 - MER5A DNA MER1_type -6 183 15 216 0 0 0 chr11 23310099 23310123 -125473349 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 538 241 102 81 chr11 23310241 23310585 -125472887 - L1ME1 LINE L1 -2 6164 5814 456 207 62 35 chr11 23310641 23310786 -125472686 + MER67C LTR ERV1 3 151 -559 1831 137 32 0 chr11 23310795 23311079 -125472393 + AluSx SINE Alu 1 293 -19 297 51 0 0 chr11 23311079 23311118 -125472354 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 389 240 133 31 chr11 23311157 23311353 -125472119 + MER67C LTR ERV1 161 376 -334 778 153 79 16 chr11 23311374 23311563 -125471909 + MER67C LTR ERV1 498 698 -12 2095 150 51 27 chr11 23311812 23312225 -125471247 + MER44D DNA MER2_type 50 527 -78 1803 193 92 57 chr11 23312229 23312721 -125470751 + MER67D LTR ERV1 1 509 -5 858 276 46 81 chr11 23312731 23313059 -125470413 - L1ME1 LINE L1 -63 6103 5765 699 192 0 0 chr11 23313059 23313189 -125470283 + FLAM_A SINE Alu 4 133 0 1219 218 57 7 chr11 23313191 23313471 -125470001 + AluJb SINE Alu 1 294 -18 858 276 46 81 chr11 23313471 23313660 -125469812 - L1ME1 LINE L1 -402 5764 5601 4630 124 54 4 chr11 23313664 23314406 -125469066 + MER4E LTR ERV1 1 779 0 2368 108 11 11 chr11 23314406 23314758 -125468714 + MER4E-int LTR ERV1 1 352 -6406 1303 94 57 66 chr11 23314768 23314809 -125468663 + MER4E-int LTR ERV1 714 754 -6004 2511 47 0 0 chr11 23314809 23315105 -125468367 + AluY SINE Alu 1 296 -15 1303 94 57 66 chr11 23315105 23315457 -125468015 + MER4E-int LTR ERV1 754 1158 -5600 201 74 0 0 chr11 23315462 23315489 -125467983 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2476 121 105 42 chr11 23315506 23316051 -125467421 + MER4E-int LTR ERV1 1766 2344 -4254 1734 167 56 7 chr11 23316045 23316351 -125467121 + MER4B-int LTR ERV1 3767 4087 -2671 * 9676 129 83 31 chr11 23316352 23318115 -125465357 + MER4B-int LTR ERV1 4453 6307 -451 318 80 0 0 chr11 23318115 23318165 -125465307 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1409 128 80 24 chr11 23318174 23318282 -125465190 + MER4B-int LTR ERV1 6381 6482 -276 198 0 0 0 chr11 23318282 23318304 -125465168 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1409 128 80 24 chr11 23318304 23318445 -125465027 + MER4B-int LTR ERV1 6482 6644 -114 258 56 0 0 chr11 23318445 23318481 -125464991 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4808 167 28 3 chr11 23318904 23319753 -125463719 - Tigger1 DNA MER2_type -1547 871 2 2143 253 76 16 chr11 23319765 23320647 -125462825 + L1M4 LINE L1 2264 3092 -3054 294 29 0 0 chr11 23320647 23320682 -125462790 + (TA)n Simple_repeat Simple_repeat 2 36 0 2245 112 7 0 chr11 23320682 23320986 -125462486 - AluSc SINE Alu -3 306 1 2143 253 76 16 chr11 23320986 23321076 -125462396 + L1M4 LINE L1 3091 3295 -2851 207 129 43 21 chr11 23321138 23321231 -125462241 + (TA)n Simple_repeat Simple_repeat 2 96 0 547 276 26 0 chr11 23321235 23321391 -125462081 + L1M4 LINE L1 3485 3644 -2502 620 254 51 83 chr11 23321392 23321872 -125461600 - MER74A LTR ERVL -1 557 21 398 167 39 0 chr11 23321872 23321950 -125461522 + L1MA5 LINE L1 6220 6300 0 357 295 77 19 chr11 23322265 23322421 -125461051 - L1MEc LINE L1 -4891 1326 1162 1608 112 0 9 chr11 23322428 23322660 -125460812 + THE1B LTR MaLR 1 230 -134 1051 128 19 0 chr11 23322689 23322700 -125460772 + THE1B LTR MaLR 206 215 -149 1742 153 28 21 chr11 23322700 23322987 -125460485 + AluSx SINE Alu 11 299 -13 1051 128 19 0 chr11 23322987 23323131 -125460341 + THE1B LTR MaLR 215 364 0 9920 129 41 3 chr11 23323131 23324653 -125458819 + THE1B-int LTR MaLR 1 1580 0 2170 148 25 8 chr11 23324653 23325011 -125458461 + THE1B LTR MaLR 1 364 0 1380 283 81 60 chr11 23325037 23326173 -125457299 - L1MEc LINE L1 -4996 1250 107 23 0 0 0 chr11 23327030 23327053 -125456419 + AT_rich Low_complexity Low_complexity 1 23 0 2176 124 0 0 chr11 23327639 23327938 -125455534 + AluSx SINE Alu 1 299 -13 303 277 101 0 chr11 23328260 23328379 -125455093 + MER5C DNA MER1_type 1 131 -193 3196 142 14 11 chr11 23329000 23329235 -125454237 - L1PB1 LINE L1 -3 6148 5915 3462 130 71 14 chr11 23329235 23329813 -125453659 - LTR9 LTR ERV1 -1 611 1 3196 142 14 11 chr11 23329813 23330127 -125453345 - L1PB1 LINE L1 -236 5915 5597 333 0 0 0 chr11 23330418 23330455 -125453017 + (TA)n Simple_repeat Simple_repeat 2 38 0 919 83 0 0 chr11 23330455 23330576 -125452896 - AluY SINE Alu -4 307 187 9115 234 59 42 chr11 23331022 23331651 -125451821 + L1ME3 LINE L1 1 617 -5947 3120 139 85 57 chr11 23331651 23332357 -125451115 + LTR8A LTR ERV1 2 727 0 9115 234 59 42 chr11 23332357 23337108 -125446364 + L1ME3 LINE L1 617 5528 -1036 183 386 11 11 chr11 23337110 23337198 -125446274 - MIR SINE MIR -155 107 20 739 291 62 26 chr11 23338100 23338489 -125444983 + L1ME3 LINE L1 5963 6365 -215 1828 121 19 59 chr11 23340461 23340783 -125442689 - AluSx SINE Alu -3 309 1 487 303 100 17 chr11 23340963 23341194 -125442278 - MIR SINE MIR -10 252 3 335 321 42 38 chr11 23342421 23342633 -125440839 + MIR SINE MIR 50 262 0 207 304 18 0 chr11 23342658 23342714 -125440758 - L3 LINE CR1 -11 1566 1510 336 335 139 14 chr11 23342769 23342978 -125440494 - L3 LINE CR1 -75 1502 1268 534 241 190 128 chr11 23342983 23343329 -125440143 - LTR50 LTR ERVL -212 583 189 255 61 0 0 chr11 23343329 23343362 -125440110 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 534 241 190 128 chr11 23343362 23343563 -125439909 - LTR50 LTR ERVL -606 189 2 1885 197 50 24 chr11 23343610 23343867 -125439605 + MSTB1 LTR MaLR 1 275 -157 2298 86 3 7 chr11 23343867 23344168 -125439304 - AluSc SINE Alu -9 300 1 1885 197 50 24 chr11 23344168 23344331 -125439141 + MSTB1 LTR MaLR 275 432 0 895 246 188 65 chr11 23344441 23344904 -125438568 + MLT2D LTR ERVL 1 520 0 591 220 28 0 chr11 23345198 23345339 -125438133 + MER103 DNA DNA 11 155 -11 4889 169 80 29 chr11 23345418 23346388 -125437084 + LTR28 LTR ERV1 1 1020 0 275 309 31 10 chr11 23347455 23347552 -125435920 - L2 LINE L2 0 3272 3174 586 254 85 12 chr11 23347596 23347761 -125435711 + MER45A DNA AcHobo 1 177 -1 445 71 29 0 chr11 23347788 23347858 -125435614 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 694 353 86 16 chr11 23347940 23348371 -125435101 - L3 LINE CR1 -699 878 418 1960 147 17 0 chr11 23348473 23348772 -125434700 + AluSx SINE Alu 1 304 -8 1237 198 180 49 chr11 23348856 23349301 -125434171 - MLT1D LTR MaLR 0 505 3 304 100 0 0 chr11 23349585 23349625 -125433847 - AluJ/FLAM SINE Alu -203 99 60 1088 189 44 22 chr11 23349625 23349853 -125433619 + AluJb SINE Alu 71 303 -9 1672 143 68 0 chr11 23351233 23351543 -125431929 - AluSx SINE Alu 0 328 1 21 0 0 0 chr11 23351700 23351721 -125431751 + AT_rich Low_complexity Low_complexity 1 21 0 1130 171 22 0 chr11 23354356 23354584 -125428888 + L1MA4 LINE L1 6062 6294 -6 23 33 0 0 chr11 23355393 23355423 -125428049 + AT_rich Low_complexity Low_complexity 1 30 0 283 359 63 30 chr11 23356353 23356590 -125426882 + L2 LINE L2 2618 2862 -452 184 229 57 57 chr11 23356638 23356708 -125426764 + L2 LINE L2 3185 3254 -59 350 315 142 0 chr11 23356934 23357096 -125426376 + L3 LINE CR1 1385 1569 -8 730 231 31 12 chr11 23357719 23357879 -125425593 - FRAM SINE Alu -21 155 1 410 315 52 24 chr11 23357944 23358195 -125425277 + L1MC4a LINE L1 5679 5936 -1872 556 49 12 12 chr11 23359680 23359761 -125423711 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 354 211 62 31 chr11 23360053 23360181 -125423291 - L1ME4a LINE L1 -223 5898 5767 355 171 14 14 chr11 23360234 23360304 -125423168 - MLT1K LTR MaLR 0 588 519 509 211 18 9 chr11 23360441 23360550 -125422922 - MER81 DNA DNA -2 112 3 2419 100 0 0 chr11 23360700 23361010 -125422462 + AluSg SINE Alu 1 310 0 302 291 8 68 chr11 23361536 23361653 -125421819 + L2 LINE L2 3141 3250 -22 29 47 0 0 chr11 23362304 23362347 -125421125 + AT_rich Low_complexity Low_complexity 1 43 0 2009 133 33 0 chr11 23362599 23362727 -125420745 + AluSx SINE Alu 1 123 -189 216 0 0 0 chr11 23362727 23362751 -125420721 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2009 133 33 0 chr11 23362751 23362924 -125420548 + AluSx SINE Alu 123 312 0 1991 121 0 0 chr11 23363029 23363301 -125420171 - AluSx SINE Alu -17 295 24 249 363 159 0 chr11 23363414 23363527 -125419945 + MIR3 SINE MIR 30 160 -48 1774 171 22 39 chr11 23364337 23364700 -125418772 + L1MDa LINE L1 6 362 -6178 1192 264 19 28 chr11 23364704 23365174 -125418298 + L1M4 LINE L1 2367 2832 -3314 1534 237 11 25 chr11 23365186 23365544 -125417928 - MLT1A1 LTR MaLR -12 353 1 2425 258 101 58 chr11 23365554 23367893 -125415579 + L1M4 LINE L1 2839 5169 -977 218 308 83 8 chr11 23368473 23368593 -125414879 + L2 LINE L2 3183 3311 -2 832 88 0 16 chr11 23368859 23368984 -125414488 - L1PB1 LINE L1 0 6151 6029 635 289 161 23 chr11 23370427 23370769 -125412703 + MLT1L LTR MaLR 225 613 -2 2331 114 0 0 chr11 23371285 23371591 -125411881 + AluSg SINE Alu 3 308 -2 995 298 57 61 chr11 23372123 23372629 -125410843 - LTR67 LTR ERVL 0 557 54 717 174 55 119 chr11 23372635 23372836 -125410636 + MER20 DNA MER1_type 32 219 0 2298 178 14 14 chr11 23372998 23373424 -125410048 - MSTB LTR MaLR 0 426 1 278 287 19 46 chr11 23374515 23374623 -125408849 - MIR SINE MIR -60 202 98 287 241 82 72 chr11 23375137 23375201 -125408271 - MER112 DNA MER1_type -5 255 193 2453 112 22 3 chr11 23375201 23375558 -125407914 - THE1B LTR MaLR 0 364 1 287 241 82 72 chr11 23375558 23375700 -125407772 - MER112 DNA MER1_type -67 193 47 2249 87 10 7 chr11 23375818 23376118 -125407354 + AluY SINE Alu 1 301 -10 277 414 83 0 chr11 23377348 23377505 -125405967 - L2 LINE L2 0 3272 3103 187 298 183 0 chr11 23377796 23377900 -125405572 - MIR SINE MIR -11 251 129 664 296 40 8 chr11 23378623 23378873 -125404599 + MIR SINE MIR 2 259 -3 375 31 0 47 chr11 23378897 23378961 -125404511 + (TA)n Simple_repeat Simple_repeat 1 61 0 499 251 44 101 chr11 23379103 23379330 -125404142 - MIR SINE MIR -1 261 48 455 380 10 0 chr11 23380217 23380422 -125403050 - LTR33 LTR ERVL -310 211 5 22 56 0 0 chr11 23382040 23382076 -125401396 + AT_rich Low_complexity Low_complexity 1 36 0 227 277 0 0 chr11 23382080 23382127 -125401345 + MER113 DNA MER1_type? 475 521 0 22 35 0 0 chr11 23382538 23382567 -125400905 + AT_rich Low_complexity Low_complexity 1 29 0 216 135 0 0 chr11 23382652 23382689 -125400783 + (TATG)n Simple_repeat Simple_repeat 1 37 0 294 323 61 23 chr11 23382823 23383018 -125400454 + MLT1J LTR MaLR 319 611 -4 5620 155 9 5 chr11 23383130 23384095 -125399377 - L1MA8 LINE L1 0 6291 5323 266 290 131 51 chr11 23384285 23384461 -125399011 - MIR SINE MIR -6 256 67 292 87 22 0 chr11 23384527 23384573 -125398899 - MADE1 DNA Mariner -33 47 1 1502 304 134 26 chr11 23384578 23385319 -125398153 + L2 LINE L2 1853 2673 -641 741 316 57 60 chr11 23385390 23385826 -125397646 + L2 LINE L2 2875 3309 -4 285 313 27 41 chr11 23385902 23386049 -125397423 - MER5A DNA MER1_type -16 173 29 1286 251 115 50 chr11 23386128 23386669 -125396803 + MLT1E2 LTR MaLR 51 626 0 26 50 0 0 chr11 23387012 23387052 -125396420 + AT_rich Low_complexity Low_complexity 1 40 0 219 339 96 17 chr11 23387145 23387260 -125396212 + MER91C DNA MER1_type 17 140 0 968 247 188 3 chr11 23387327 23387635 -125395837 + MLT1A1 LTR MaLR 1 365 0 2254 102 0 6 chr11 23387657 23387970 -125395502 + AluY SINE Alu 1 311 0 192 381 67 0 chr11 23388024 23388129 -125395343 + MIR3 SINE MIR 87 198 -10 18203 27 1 1 chr11 23388254 23391200 -125392272 + L1PA3 LINE L1 3207 6152 -3 22 35 0 0 chr11 23392012 23392041 -125391431 + AT_rich Low_complexity Low_complexity 1 29 0 771 230 86 19 chr11 23392061 23392270 -125391202 - L1ME1 LINE L1 -6 6160 5938 292 211 0 70 chr11 23392427 23392498 -125390974 - MLT2D LTR ERVL -355 59 1 1701 231 58 21 chr11 23392498 23393114 -125390358 - L1M4 LINE L1 -1278 4868 4230 25 0 0 0 chr11 23393807 23393832 -125389640 + AT_rich Low_complexity Low_complexity 1 25 0 1360 212 51 66 chr11 23394499 23394951 -125388521 - MER65A LTR ERV1 0 445 1 195 42 0 0 chr11 23395036 23395060 -125388412 + (TG)n Simple_repeat Simple_repeat 1 24 0 453 297 61 93 chr11 23395098 23395539 -125387933 - MLT1H LTR MaLR 0 549 123 182 392 0 14 chr11 23395615 23395689 -125387783 + MIR3 SINE MIR 105 177 -31 23 0 0 0 chr11 23395800 23395823 -125387649 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 23396446 23396468 -125387004 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2286 80 3 0 chr11 23397808 23398096 -125385376 - AluSc SINE Alu -15 294 6 203 227 15 0 chr11 23398104 23398170 -125385302 + CT-rich Low_complexity Low_complexity 2 68 0 600 136 12 206 chr11 23398292 23398535 -125384937 + L1MA9 LINE L1 6117 6312 0 581 313 21 38 chr11 23398961 23398995 -125384477 - L1ME1 LINE L1 -26 6140 6107 5052 88 14 3 chr11 23398995 23399709 -125383763 - LTR30 LTR ERV1 0 722 1 581 313 21 38 chr11 23399709 23399962 -125383510 - L1ME1 LINE L1 -59 6107 5858 890 174 13 0 chr11 23399974 23400123 -125383349 - FRAM SINE Alu -10 166 16 239 263 45 0 chr11 23400156 23400289 -125383183 - L1MDb LINE L1 -4042 2364 2226 * 2244 233 63 49 chr11 23400285 23400504 -125382968 - L1MDb LINE L1 -4552 1854 1640 796 219 46 46 chr11 23400504 23400723 -125382749 - MER20 DNA MER1_type 0 219 1 2244 233 63 49 chr11 23400723 23401251 -125382221 - L1MDb LINE L1 -4766 1640 1121 1941 138 0 0 chr11 23401251 23401554 -125381918 - AluSx SINE Alu 0 303 1 2244 233 63 49 chr11 23401554 23401774 -125381698 - L1MDb LINE L1 -5285 1121 901 621 204 0 36 chr11 23401774 23401911 -125381561 - FLAM_C SINE Alu 0 133 2 2244 233 63 49 chr11 23401911 23402032 -125381440 - L1MDb LINE L1 -5505 901 783 269 369 8 0 chr11 23402774 23402904 -125380568 - L1MDb LINE L1 -5935 461 331 234 280 42 56 chr11 23403195 23403338 -125380134 + MER117 DNA MER1_type 6 146 -51 313 363 62 0 chr11 23403696 23403856 -125379616 + MER20B DNA MER1_type 2 171 -612 1827 245 85 18 chr11 23403937 23404595 -125378877 + Zaphod DNA AcHobo 178 879 -3152 1321 213 40 4 chr11 23405865 23405987 -125377485 + AluJo SINE Alu 1 117 -195 450 0 0 0 chr11 23405987 23406037 -125377435 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1321 213 40 4 chr11 23406037 23406186 -125377286 + AluJo SINE Alu 117 282 -30 22 70 0 0 chr11 23406548 23406591 -125376881 + AT_rich Low_complexity Low_complexity 1 43 0 7825 85 3 27 chr11 23457047 23458193 -125325279 + L1P LINE L1 3282 4400 -1746 6262 117 8 14 chr11 23458293 23459334 -125324138 + L1P LINE L1 2241 3274 -2872 7183 129 2 30 chr11 23459434 23460614 -125322858 - L1P LINE L1 -4439 1707 561 1889 143 61 28 chr11 23461013 23461376 -125322096 - THE1C LTR MaLR 0 375 1 2239 117 0 0 chr11 23461522 23461820 -125321652 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr11 23461830 23461869 -125321603 + AT_rich Low_complexity Low_complexity 1 39 0 894 193 13 25 chr11 23463497 23463736 -125319736 + L1P LINE L1 5127 5362 -784 2233 52 0 0 chr11 23463767 23464034 -125319438 - AluY SINE Alu -44 267 1 903 76 0 0 chr11 23464432 23464551 -125318921 - AluSp/q SINE Alu -1 312 194 347 298 161 18 chr11 23464804 23465022 -125318450 - MIR SINE MIR -12 250 2 4139 241 58 12 chr11 23465805 23467064 -125316408 - L1M4 LINE L1 -1827 4319 3003 2817 13 0 0 chr11 23467187 23467497 -125315975 + AluYa5 SINE Alu 1 310 -1 2544 52 0 10 chr11 23467546 23467854 -125315618 + AluY SINE Alu 1 305 -6 273 29 0 0 chr11 23469219 23469253 -125314219 + (TG)n Simple_repeat Simple_repeat 2 35 0 913 177 79 10 chr11 23469703 23469906 -125313566 + MER20 DNA MER1_type 1 217 -2 2424 172 21 34 chr11 23470175 23470645 -125312827 - L1MCa LINE L1 -5943 483 20 231 275 14 0 chr11 23471652 23471721 -125311751 + MIR3 SINE MIR 126 195 -13 2141 108 3 10 chr11 23472057 23472362 -125311110 + AluSp SINE Alu 1 303 -10 252 312 136 40 chr11 23472849 23472934 -125310538 + MIR3 SINE MIR 48 150 -58 2293 188 48 30 chr11 23472934 23473430 -125310042 - MLT1D LTR MaLR 0 505 1 252 312 136 40 chr11 23473430 23473469 -125310003 + MIR3 SINE MIR 150 184 -24 288 204 0 19 chr11 23474497 23474551 -125308921 + FLAM_A SINE Alu 67 119 -14 21 0 0 0 chr11 23474613 23474634 -125308838 + AT_rich Low_complexity Low_complexity 1 21 0 2123 108 7 0 chr11 23474827 23475124 -125308348 - AluSq SINE Alu -1 312 14 2856 65 35 5 chr11 23475192 23475590 -125307882 + L1PA8 LINE L1 5763 6172 0 213 308 31 0 chr11 23475750 23475815 -125307657 - MIR3 SINE MIR -19 189 123 380 23 0 0 chr11 23477553 23477597 -125305875 - THE1B LTR MaLR -320 44 1 184 210 99 49 chr11 23477944 23478025 -125305447 - MIR SINE MIR -92 170 86 2426 72 0 86 chr11 23478199 23478618 -125304854 - L1P LINE L1 -3638 2508 2126 * 7810 133 11 28 chr11 23478599 23479938 -125303534 - L1P LINE L1 -3869 2277 962 469 286 40 29 chr11 23480142 23480317 -125303155 - MIR SINE MIR -79 183 7 14805 70 8 14 chr11 23482262 23484275 -125299197 + L1P LINE L1 3249 5248 -898 391 301 85 22 chr11 23484380 23484535 -125298937 - MIR SINE MIR -69 139 30 24 111 0 0 chr11 23485030 23485138 -125298334 + AT_rich Low_complexity Low_complexity 1 108 0 444 274 157 24 chr11 23485668 23485923 -125297549 + L3 LINE CR1 423 711 -866 391 165 0 143 chr11 23486602 23486735 -125296737 - Charlie7 DNA MER1_type -2 2610 2497 1220 244 102 8 chr11 23488102 23488484 -125294988 + LTR52 LTR ERVL 1 418 -3 4014 128 47 69 chr11 23488495 23489297 -125294175 + LTR1 LTR ERV1 1 785 0 313 231 68 116 chr11 23489304 23489451 -125294021 + L2 LINE L2 3169 3308 -5 2301 143 78 5 chr11 23489596 23489995 -125293477 - MSTA LTR MaLR 0 428 1 3365 61 0 0 chr11 23491874 23492299 -125291173 - L1PA5 LINE L1 -11 6143 5719 4681 219 31 21 chr11 23492763 23494523 -125288949 + L1PA15-16 LINE L1 2077 3838 -3011 883 216 4 4 chr11 23494490 23494722 -125288750 + L1MA4 LINE L1 3971 4202 -2647 * 10924 159 19 14 chr11 23494840 23496866 -125286606 - L1P LINE L1 -2581 3565 1531 13632 123 20 9 chr11 23496967 23499066 -125284406 + Tigger1 DNA MER2_type 298 2418 0 5390 166 26 14 chr11 23499212 23500941 -125282531 + L1MA4 LINE L1 4545 6294 -6 2020 127 0 26 chr11 23500951 23501259 -125282213 + AluSx SINE Alu 1 300 -12 2250 75 4 0 chr11 23501276 23501597 -125281875 + AluY SINE Alu 1 322 0 354 311 15 15 chr11 23503235 23503451 -125280021 - MER66-int LTR ERV1 -5043 1633 526 274 213 0 0 chr11 23504698 23504759 -125278713 - LTR58 LTR ERV1 -269 410 350 225 296 59 15 chr11 23506222 23506357 -125277115 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr11 23506382 23506406 -125277066 + AT_rich Low_complexity Low_complexity 1 24 0 299 379 37 23 chr11 23506534 23506748 -125276724 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr11 23506931 23506953 -125276519 + AT_rich Low_complexity Low_complexity 1 22 0 1720 168 90 13 chr11 23507044 23507354 -125276118 - MER1B DNA MER1_type 0 337 4 391 320 63 17 chr11 23508764 23508939 -125274533 - MLT2F LTR ERVL -480 183 1 680 255 81 67 chr11 23508942 23509106 -125274366 - ERVL-F LTR ERVL -13 5751 5591 2156 82 10 17 chr11 23509106 23509400 -125274072 - AluY SINE Alu -19 292 1 680 255 81 67 chr11 23509400 23509670 -125273802 - ERVL-F LTR ERVL -173 5591 5311 1900 137 70 6 chr11 23509704 23510017 -125273455 + MER1B DNA MER1_type 3 335 -2 2734 284 56 12 chr11 23510018 23510846 -125272626 - ERVL-F LTR ERVL -541 5223 4360 5883 113 71 0 chr11 23511043 23511984 -125271488 - L1PA10 LINE L1 0 6168 5207 28 0 0 0 chr11 23512078 23512106 -125271366 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 23512125 23512153 -125271319 + AT_rich Low_complexity Low_complexity 1 28 0 1668 191 30 64 chr11 23512226 23512630 -125270842 + MLT1B LTR MaLR 1 390 0 183 293 0 35 chr11 23513117 23513175 -125270297 - L2 LINE L2 -2 3270 3215 210 308 0 0 chr11 23514075 23514127 -125269345 - L2 LINE L2 -5 3267 3216 2029 97 17 24 chr11 23514443 23514731 -125268741 + AluSc SINE Alu 3 288 -21 181 246 87 116 chr11 23514758 23514896 -125268576 - L2 LINE L2 -299 2973 2840 183 343 36 58 chr11 23515046 23515183 -125268289 + L2 LINE L2 3180 3313 0 26 0 0 0 chr11 23515801 23515827 -125267645 + AT_rich Low_complexity Low_complexity 1 26 0 394 321 38 13 chr11 23516544 23516703 -125266769 + MIR SINE MIR 7 169 -93 196 258 48 65 chr11 23516740 23516802 -125266670 + L2 LINE L2 3191 3251 -21 482 0 0 17 chr11 23516803 23516862 -125266610 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 366 236 0 56 chr11 23516948 23517037 -125266435 + L2 LINE L2 3189 3272 0 557 246 34 0 chr11 23517254 23517372 -125266100 - L1M4b LINE L1 -6727 132 11 2056 129 3 0 chr11 23517668 23517954 -125265518 - AluSx SINE Alu -20 292 6 753 187 6 24 chr11 23518441 23518607 -125264865 - L1MA7 LINE L1 -64 6227 6065 499 159 28 0 chr11 23518890 23518997 -125264475 + L1MB8 LINE L1 6069 6178 0 183 319 0 0 chr11 23519257 23519304 -125264168 - L2 LINE L2 -23 3290 3244 2148 115 0 0 chr11 23519526 23519813 -125263659 + AluSg SINE Alu 1 287 -23 2091 127 0 19 chr11 23519950 23520258 -125263214 - AluSp SINE Alu -11 302 1 180 424 0 0 chr11 23520271 23520356 -125263116 - L2 LINE L2 -1 3271 3187 739 22 22 0 chr11 23520790 23520881 -125262591 + L1P2 LINE L1 5593 5685 -469 3122 198 15 52 chr11 23520963 23521832 -125261640 + LTR5 LTR ERVK 133 969 0 2514 127 5 16 chr11 23521832 23522211 -125261261 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr11 23522317 23522488 -125260984 + MIR SINE MIR 24 203 -59 224 167 21 0 chr11 23522488 23522536 -125260936 + (TG)n Simple_repeat Simple_repeat 1 49 0 342 273 11 0 chr11 23522536 23522624 -125260848 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr11 23522631 23522690 -125260782 + (TA)n Simple_repeat Simple_repeat 1 62 0 289 333 69 6 chr11 23523255 23523414 -125260058 - MIR SINE MIR -10 252 84 260 271 76 25 chr11 23523692 23523810 -125259662 + L1M4 LINE L1 4810 4933 -1213 23 54 0 0 chr11 23523861 23523898 -125259574 + AT_rich Low_complexity Low_complexity 1 37 0 534 306 99 40 chr11 23523940 23524492 -125258980 - L1MEd LINE L1 -4132 2178 1660 2138 95 24 20 chr11 23524492 23524788 -125258684 + AluSx SINE Alu 1 297 -15 534 306 99 40 chr11 23524788 23525313 -125258159 - L1MEd LINE L1 -4650 1660 969 355 217 0 0 chr11 23526465 23526525 -125256947 - Tigger7 DNA MER2_type 0 2487 2428 2773 190 23 29 chr11 23526534 23527060 -125256412 - Tigger7 DNA MER2_type -1964 523 1 505 103 23 0 chr11 23527680 23527767 -125255705 - L1MA5A LINE L1 0 6297 6209 250 160 0 0 chr11 23527876 23527926 -125255546 + (TA)n Simple_repeat Simple_repeat 1 50 0 912 133 38 0 chr11 23527926 23528084 -125255388 - L1MA5A LINE L1 -92 6205 6042 203 297 94 43 chr11 23528373 23528511 -125254961 + MIR SINE MIR 118 262 0 443 250 88 25 chr11 23528849 23529009 -125254463 - MIR SINE MIR -50 212 43 1904 150 0 16 chr11 23529040 23529347 -125254125 - AluJo SINE Alu -10 302 1 1515 173 24 79 chr11 23529618 23529947 -125253525 - AluJo SINE Alu -1 311 1 2387 49 0 0 chr11 23529964 23530251 -125253221 - L1P LINE L1 -5495 651 365 7886 31 0 3 chr11 23530251 23531968 -125251504 + L1PA3 LINE L1 4442 6155 0 437 131 0 0 chr11 23531970 23532031 -125251441 - FLAM SINE Alu -23 120 60 437 288 129 17 chr11 23532571 23532811 -125250661 + L1M4 LINE L1 3096 3362 -2784 205 229 0 62 chr11 23533165 23533261 -125250211 + T-rich Low_complexity Low_complexity 2 91 0 710 280 82 8 chr11 23534519 23534776 -125248696 + LTR16B LTR ERVL 187 462 -2 26 0 0 0 chr11 23535159 23535185 -125248287 + AT_rich Low_complexity Low_complexity 1 26 0 2883 124 140 22 chr11 23535962 23536511 -125246961 + LTR18B LTR ERVL 1 614 0 1664 188 0 11 chr11 23537129 23537441 -125246031 - AluJb SINE Alu 0 315 7 443 289 14 14 chr11 23537549 23537691 -125245781 - MER101 LTR ERV1 -55 419 278 1485 196 8 4 chr11 23537691 23537956 -125245516 + AluJo SINE Alu 1 266 -46 295 266 53 21 chr11 23537999 23538093 -125245379 - MER101B LTR ERV1 -276 294 198 341 203 13 38 chr11 23538394 23538473 -125244999 + MER5B DNA MER1_type 100 176 -2 32 91 0 0 chr11 23538554 23538642 -125244830 + AT_rich Low_complexity Low_complexity 1 88 0 1626 253 18 31 chr11 23538735 23539244 -125244228 - Charlie1b DNA MER1_type -15 508 7 4468 81 43 5 chr11 23539694 23540772 -125242700 - MER11A LTR ERVK 0 1266 1 352 262 70 21 chr11 23540915 23541086 -125242386 + L1ME3A LINE L1 5741 5886 -284 24 0 0 0 chr11 23541405 23541429 -125242043 + AT_rich Low_complexity Low_complexity 1 24 0 247 104 42 0 chr11 23541779 23541827 -125241645 + (TA)n Simple_repeat Simple_repeat 1 50 0 304 253 0 24 chr11 23541827 23541910 -125241562 + L1MC4 LINE L1 6612 6692 -1350 752 232 7 0 chr11 23542117 23542268 -125241204 + FRAM SINE Alu 2 153 -23 1031 283 108 26 chr11 23542292 23542755 -125240717 + HAL1 LINE L1 36 536 -1971 2502 50 20 0 chr11 23542833 23543135 -125240337 - AluY SINE Alu -3 308 1 241 283 141 0 chr11 23543329 23543506 -125239966 + HAL1 LINE L1 1956 2157 -350 677 181 84 48 chr11 23543518 23543625 -125239847 + MLT1B LTR MaLR 21 138 -252 2410 168 17 7 chr11 23543625 23544047 -125239425 + MSTB LTR MaLR 1 426 0 677 181 84 48 chr11 23544047 23544105 -125239367 + MLT1B LTR MaLR 138 192 -198 328 299 76 34 chr11 23544147 23544438 -125239034 + HAL1 LINE L1 2128 2430 -77 315 0 0 0 chr11 23544975 23545010 -125238462 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 23545414 23545435 -125238037 + AT_rich Low_complexity Low_complexity 1 21 0 554 290 92 39 chr11 23545756 23546115 -125237357 + MLT1J2 LTR MaLR 73 450 0 30 27 0 0 chr11 23546250 23546287 -125237185 + AT_rich Low_complexity Low_complexity 1 37 0 344 264 0 44 chr11 23546471 23546562 -125236910 - L2 LINE L2 0 3313 3227 * 355 366 99 14 chr11 23546558 23546779 -125236693 - MIR SINE MIR -3 259 20 186 299 130 0 chr11 23547707 23547784 -125235688 + MIR SINE MIR 120 206 -56 331 358 93 9 chr11 23547797 23548023 -125235449 + L3 LINE CR1 934 1178 -399 324 0 0 0 chr11 23548039 23548075 -125235397 + (A)n Simple_repeat Simple_repeat 1 36 0 3867 172 15 24 chr11 23548426 23548735 -125234737 + L1PA16 LINE L1 5192 5502 -664 2376 80 0 0 chr11 23548735 23549034 -125234438 + AluY SINE Alu 1 299 -12 3867 172 15 24 chr11 23549034 23549548 -125233924 + L1PA16 LINE L1 5502 6007 -159 453 304 58 38 chr11 23549556 23549822 -125233650 + MER115 DNA AcHobo 417 4030 -1 21 0 0 0 chr11 23550587 23550608 -125232864 + AT_rich Low_complexity Low_complexity 1 21 0 13284 37 0 2 chr11 23550959 23552602 -125230870 - L1PA3 LINE L1 -1681 4465 2827 7629 25 1 0 chr11 23552604 23554288 -125229184 + L1PA3 LINE L1 4464 6152 -3 367 246 82 45 chr11 23554742 23554876 -125228596 - MIR SINE MIR -107 155 17 398 329 7 7 chr11 23555123 23555263 -125228209 + MIR SINE MIR 111 250 -12 788 197 67 59 chr11 23555421 23555529 -125227943 - MER33 DNA MER1_type -2329 256 150 2333 77 3 0 chr11 23555529 23555828 -125227644 - AluY SINE Alu -10 301 2 788 197 67 59 chr11 23555828 23555973 -125227499 - MER33 DNA MER1_type -2435 150 1 533 294 32 18 chr11 23555976 23556172 -125227300 - MIR SINE MIR -64 198 3 873 189 18 77 chr11 23557034 23557256 -125226216 - Tigger1 DNA MER2_type 0 2418 2210 802 171 0 29 chr11 23557264 23557404 -125226068 - Tigger1 DNA MER2_type -2282 136 1 1691 189 9 0 chr11 23557439 23557756 -125225716 - L1MC1 LINE L1 -2 6331 6012 195 171 9 45 chr11 23558955 23559066 -125224406 + (TA)n Simple_repeat Simple_repeat 2 108 0 2520 186 15 9 chr11 23559645 23560103 -125223369 - LTR32 LTR ERVL 0 471 11 228 210 25 37 chr11 23560107 23560188 -125223284 - LTR58 LTR ERV1 -250 429 350 830 345 55 56 chr11 23561318 23563452 -125220020 - PABL_B-int LTR ERV1 -1621 6135 3315 1972 128 34 0 chr11 23563452 23563748 -125219724 + AluSx SINE Alu 1 306 -6 830 345 55 56 chr11 23563748 23564363 -125219109 - PABL_B-int LTR ERV1 -4441 3315 2700 371 257 103 63 chr11 23566025 23566200 -125217272 - MIR3 SINE MIR -26 182 1 2350 104 8 6 chr11 23566218 23566572 -125216900 - L1PA13 LINE L1 -5 6158 5804 187 340 62 0 chr11 23566728 23566825 -125216647 + L2 LINE L2 2953 3055 -217 21 57 0 0 chr11 23567431 23567466 -125216006 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr11 23567639 23567675 -125215797 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chr11 23567821 23567870 -125215602 + AT_rich Low_complexity Low_complexity 1 49 0 226 384 34 20 chr11 23568237 23568383 -125215089 - L2 LINE L2 0 3272 3125 534 119 59 20 chr11 23568552 23568653 -125214819 - L1MA5 LINE L1 -1 6299 6195 2021 165 16 8 chr11 23568654 23569029 -125214443 + L1MA6 LINE L1 5816 6193 -107 279 0 0 0 chr11 23569614 23569645 -125213827 + (A)n Simple_repeat Simple_repeat 1 31 0 826 264 141 6 chr11 23569689 23570015 -125213457 + MER66A LTR ERV1 99 468 -10 200 368 56 7 chr11 23570665 23570809 -125212663 - MIR SINE MIR -61 201 51 23 0 0 0 chr11 23570899 23570922 -125212550 + AT_rich Low_complexity Low_complexity 1 23 0 204 145 32 16 chr11 23570955 23571017 -125212455 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1621 126 4 21 chr11 23571323 23571562 -125211910 - AluSg SINE Alu -18 292 58 344 111 16 0 chr11 23571566 23571629 -125211843 + (TC)n Simple_repeat Simple_repeat 1 64 0 2276 198 6 0 chr11 23572050 23572519 -125210953 - L1P LINE L1 -1463 4683 4212 306 270 44 36 chr11 23573705 23573842 -125209630 - L1MC4a LINE L1 -1913 5895 5758 2181 164 18 46 chr11 23573899 23574337 -125209135 - MSTB LTR MaLR 0 426 1 42 20 0 0 chr11 23574488 23574537 -125208935 + AT_rich Low_complexity Low_complexity 1 49 0 1269 191 58 20 chr11 23575338 23575631 -125207841 - L1MD1 LINE L1 -1 6241 5938 654 181 0 0 chr11 23575631 23575736 -125207736 + FLAM_C SINE Alu 17 121 -22 2504 174 28 21 chr11 23575743 23576284 -125207188 - L1MD1 LINE L1 -364 5878 5334 288 122 0 0 chr11 23576291 23576340 -125207132 + L1M4 LINE L1 5106 5154 -992 1180 159 72 24 chr11 23576340 23576591 -125206881 + Ricksha_b DNA DNA 371 633 -621 3842 239 55 25 chr11 23576631 23577247 -125206225 - L1MD1 LINE L1 -869 5277 4681 2180 148 22 6 chr11 23577247 23577605 -125205867 - THE1B LTR MaLR 0 364 1 3842 239 55 25 chr11 23577605 23578406 -125205066 - L1MD1 LINE L1 -1465 4681 3817 2823 60 0 3 chr11 23578671 23579035 -125204437 - L1PA6 LINE L1 0 6154 5792 435 236 7 40 chr11 23579057 23579205 -125204267 - L1M4 LINE L1 -903 5243 5101 226 288 0 0 chr11 23579264 23579344 -125204128 + (TA)n Simple_repeat Simple_repeat 2 81 0 6305 184 15 20 chr11 23579345 23580644 -125202828 + Ricksha_b DNA DNA 1 1646 -13 1530 266 59 37 chr11 23580688 23581371 -125202101 + L1MC4 LINE L1 6712 7409 -633 789 163 57 0 chr11 23581477 23581618 -125201854 - THE1C LTR MaLR -200 175 27 2579 232 17 18 chr11 23582629 23583280 -125200192 + L1MD3 LINE L1 7331 7980 -15 31 0 0 0 chr11 23583280 23583311 -125200161 + AT_rich Low_complexity Low_complexity 1 31 0 508 376 37 12 chr11 23583596 23583918 -125199554 - L3 LINE CR1 -32 1545 1216 210 293 17 95 chr11 23584730 23584846 -125198626 + L3 LINE CR1 1257 1363 -214 268 362 78 29 chr11 23585105 23585455 -125198017 + L2 LINE L2 2852 3292 -21 259 339 119 0 chr11 23585677 23585786 -125197686 + MIR SINE MIR 26 147 -115 22 35 0 0 chr11 23585840 23585869 -125197603 + AT_rich Low_complexity Low_complexity 1 29 0 2718 97 31 5 chr11 23586578 23586968 -125196504 + MLT2A1 LTR ERVL 1 400 -44 214 104 21 21 chr11 23586986 23587034 -125196438 + (TA)n Simple_repeat Simple_repeat 1 48 0 286 148 0 19 chr11 23587036 23587090 -125196382 + MLT2A1 LTR ERVL 399 451 -2 21 57 0 0 chr11 23587234 23587269 -125196203 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 23587590 23587613 -125195859 + AT_rich Low_complexity Low_complexity 1 23 0 2421 146 41 5 chr11 23587760 23588172 -125195300 + L1PA15 LINE L1 5736 6162 -3 407 188 0 0 chr11 23588183 23588268 -125195204 + L1M4 LINE L1 4436 4520 -1626 206 176 78 20 chr11 23589491 23589542 -125193930 - MIR3 SINE MIR -2 206 153 195 323 15 0 chr11 23591158 23591223 -125192249 - MIR SINE MIR 0 262 197 232 329 142 13 chr11 23591384 23591539 -125191933 - MIR SINE MIR -67 195 21 985 257 81 42 chr11 23591558 23591939 -125191533 - MSTD LTR MaLR 0 396 1 228 256 35 47 chr11 23591968 23592054 -125191418 - MIR3 SINE MIR -114 94 10 1690 104 0 4 chr11 23592706 23592937 -125190535 + AluSq SINE Alu 70 299 -14 26 0 0 0 chr11 23594126 23594152 -125189320 + AT_rich Low_complexity Low_complexity 1 26 0 1350 172 13 98 chr11 23594857 23595246 -125188226 - L1MC3 LINE L1 -15 7770 7415 1063 230 104 0 chr11 23595246 23595516 -125187956 + MLT2B2 LTR ERVL 216 513 -2 1423 259 28 13 chr11 23595516 23595976 -125187496 - L1M4 LINE L1 -1801 4345 3879 675 278 123 21 chr11 23595963 23596337 -125187135 - L1MCb LINE L1 -5534 511 100 * 1029 120 21 128 chr11 23596511 23596745 -125186727 + MER2 DNA MER2_type 2 210 -135 414 211 24 38 chr11 23599333 23599382 -125184090 - LTR43 LTR ERV1 -207 472 424 2463 61 3 13 chr11 23599382 23599695 -125183777 - AluY SINE Alu -1 310 1 414 211 24 38 chr11 23599695 23599794 -125183678 - LTR43 LTR ERV1 -255 424 179 332 363 21 26 chr11 23600844 23601037 -125182435 + MIR SINE MIR 65 256 -6 732 177 8 0 chr11 23601121 23601245 -125182227 + FLAM_C SINE Alu 1 125 -18 565 158 44 18 chr11 23601258 23601372 -125182100 - L1MD1 LINE L1 -5 6237 6121 369 244 13 0 chr11 23603109 23603187 -125180285 + Tigger5 DNA MER2_type 1 79 -2244 * 1526 145 4 0 chr11 23603180 23603422 -125180050 + Tigger5 DNA MER2_type 2081 2323 0 23 33 0 0 chr11 23604081 23604111 -125179361 + AT_rich Low_complexity Low_complexity 1 30 0 376 19 38 0 chr11 23604698 23604751 -125178721 + (TA)n Simple_repeat Simple_repeat 2 56 0 1869 141 3 17 chr11 23604751 23605048 -125178424 - AluSx SINE Alu -19 293 1 355 274 46 57 chr11 23605223 23605398 -125178074 + MIR SINE MIR 12 184 -78 1597 208 30 46 chr11 23605398 23605866 -125177606 + MER89 LTR ERV1 1 559 0 234 307 0 11 chr11 23606198 23606286 -125177186 - MER5B DNA MER1_type -70 108 22 202 219 16 62 chr11 23606233 23606297 -125177175 + MER5A DNA MER1_type 117 177 -12 * 190 273 15 30 chr11 23606313 23606379 -125177093 + MER5B DNA MER1_type 88 152 -26 2475 78 3 0 chr11 23608061 23608370 -125175102 + AluSq SINE Alu 3 312 -1 221 258 45 0 chr11 23608521 23608587 -125174885 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 2608 39 3 0 chr11 23608768 23609076 -125174396 + AluY SINE Alu 1 309 -2 197 162 0 0 chr11 23609320 23609357 -125174115 - L2 LINE L2 0 3313 3277 198 330 28 38 chr11 23609499 23609605 -125173867 + L2 LINE L2 2422 2526 -788 11408 61 11 1 chr11 23609699 23611962 -125171510 - L1PA6 LINE L1 0 6154 3879 19070 123 14 12 chr11 23611962 23614939 -125168533 - L1PA6 LINE L1 -3152 2994 12 2298 92 0 7 chr11 23615213 23615506 -125167966 - AluY SINE Alu -20 291 1 1332 226 0 8 chr11 23616484 23616749 -125166723 - AluJo SINE Alu -49 263 1 186 43 0 0 chr11 23616802 23616825 -125166647 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22921 176 26 29 chr11 23616825 23623291 -125160181 - L1PA11 LINE L1 -10 6479 2 2111 137 13 53 chr11 23623378 23623757 -125159715 + THE1B LTR MaLR 1 364 0 10805 112 20 4 chr11 23623757 23625312 -125158160 + THE1B-int LTR MaLR 1 1580 0 1980 165 14 30 chr11 23625312 23625682 -125157790 + THE1B LTR MaLR 1 364 0 314 238 40 10 chr11 23625813 23625914 -125157558 + L1ME LINE L1 5685 5788 -374 759 282 77 42 chr11 23625978 23626332 -125157140 - MER77 LTR ERV1 -6 599 177 199 419 67 0 chr11 23626749 23626854 -125156618 + L2 LINE L2 3116 3227 -45 859 298 34 4 chr11 23626897 23627135 -125156337 + MIR SINE MIR 13 257 -5 2142 118 7 3 chr11 23627578 23627883 -125155589 - AluSx SINE Alu -2 310 5 3187 152 48 12 chr11 23628687 23629265 -125154207 - LTR26 LTR ERV1 -4 599 1 876 190 23 56 chr11 23629516 23629732 -125153740 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr11 23629836 23630008 -125153464 + L2 LINE L2 2926 3091 -181 824 251 62 46 chr11 23630806 23631241 -125152231 - MER69 DNA AcHobo -3 2523 2082 2085 139 33 41 chr11 23631291 23631658 -125151814 - THE1B LTR MaLR 0 364 1 227 317 0 12 chr11 23632061 23632143 -125151329 - MER69 DNA AcHobo -2445 81 1 2112 119 3 7 chr11 23633225 23633528 -125149944 + AluSq SINE Alu 1 302 -11 2374 146 3 3 chr11 23633922 23634285 -125149187 - THE1B LTR MaLR -1 363 1 1657 74 0 31 chr11 23634290 23634519 -125148953 - THE1B-int LTR MaLR -5 1575 1354 287 125 0 18 chr11 23634520 23634576 -125148896 - MLT2A2 LTR ERVL 0 453 399 305 123 0 18 chr11 23634576 23634633 -125148839 + (CATA)n Simple_repeat Simple_repeat 1 56 0 475 146 11 0 chr11 23634653 23634742 -125148730 - HERVL LTR ERVL -69 5585 5496 220 211 28 0 chr11 23634742 23634813 -125148659 + (TA)n Simple_repeat Simple_repeat 1 73 0 617 121 0 52 chr11 23634853 23635026 -125148446 + (TA)n Simple_repeat Simple_repeat 2 165 0 2913 100 25 0 chr11 23635030 23635429 -125148043 - MLT2A2 LTR ERVL -44 409 1 3025 81 21 9 chr11 23635460 23635895 -125147577 - HERVL-A2 LTR ERVL 0 5654 5215 1582 128 104 35 chr11 23635925 23636214 -125147258 - THE1B LTR MaLR -55 309 1 8583 128 40 8 chr11 23636214 23637529 -125145943 - THE1B-int LTR MaLR -223 1357 1 2373 123 19 6 chr11 23637529 23637888 -125145584 - THE1B LTR MaLR 0 364 1 349 257 248 63 chr11 23638388 23638594 -125144878 - MIR SINE MIR -12 250 7 2148 229 68 31 chr11 23639399 23640049 -125143423 - MER67C LTR ERV1 0 710 37 292 258 0 16 chr11 23640394 23640456 -125143016 - LTR16A LTR ERVL -285 165 105 638 175 39 71 chr11 23640950 23641104 -125142368 + LTR34 LTR ERV1 3 151 -548 1758 179 57 30 chr11 23641104 23641553 -125141919 - LTR10B LTR ERV1 0 547 1 4799 235 5 14 chr11 23641553 23642606 -125140866 - LTR10B-int LTR ERV1 0 6649 5607 652 241 25 42 chr11 23643142 23643383 -125140089 + HAL1 LINE L1 1273 1509 -998 2327 261 88 37 chr11 23643530 23644547 -125138925 + Cheshire DNA MER1_type 4 1071 -1349 399 215 13 0 chr11 23644527 23644606 -125138866 + Cheshire DNA MER1_type 1270 1349 -1071 * 1914 234 35 26 chr11 23644674 23645069 -125138403 + Cheshire DNA MER1_type 1660 2063 -357 2286 72 24 3 chr11 23645069 23645362 -125138110 - AluY SINE Alu -12 299 1 1914 234 35 26 chr11 23645362 23645513 -125137959 + Cheshire DNA MER1_type 2063 2211 -209 2771 104 22 7 chr11 23645514 23645927 -125137545 - L1PA13 LINE L1 -2 6161 5743 15612 198 15 3 chr11 23646027 23649237 -125134235 - L1P LINE L1 -927 5219 1972 516 272 7 7 chr11 23649341 23649477 -125133995 - HERVI LTR ERV1 -3527 4258 4123 201 98 24 24 chr11 23649510 23649551 -125133921 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6621 221 70 67 chr11 23649554 23653304 -125130168 - HERVI LTR ERV1 -3673 4112 5 1853 182 53 30 chr11 23653304 23653755 -125129717 - LTR10B LTR ERV1 0 547 1 * 2717 156 72 13 chr11 23653755 23654276 -125129196 + LTR34 LTR ERV1 148 699 0 409 300 118 68 chr11 23654589 23654809 -125128663 + MER115 DNA AcHobo 11 241 -452 24 0 0 0 chr11 23654823 23654847 -125128625 + AT_rich Low_complexity Low_complexity 1 24 0 3609 165 36 29 chr11 23655103 23655825 -125127647 + LTR8A LTR ERV1 1 727 0 340 215 0 0 chr11 23655854 23655919 -125127553 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr11 23655919 23656279 -125127193 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr11 23656279 23657284 -125126188 - THE1A-int LTR MaLR 0 1580 558 1430 240 2 16 chr11 23657283 23657720 -125125752 + L1P LINE L1 4906 5336 -810 * 291 130 0 0 chr11 23657898 23657944 -125125528 - MADE1 DNA Mariner 0 80 35 356 65 0 0 chr11 23658170 23658216 -125125256 + MADE1 DNA Mariner 35 80 0 23 0 0 0 chr11 23658365 23658388 -125125084 + AT_rich Low_complexity Low_complexity 1 23 0 1268 322 56 29 chr11 23659117 23659742 -125123730 - L2 LINE L2 -455 2859 2218 646 184 28 56 chr11 23659765 23659944 -125123528 + LTR37A LTR ERV1 28 201 -225 235 322 13 54 chr11 23660040 23660189 -125123283 + L2 LINE L2 3156 3298 -15 733 271 26 0 chr11 23660290 23660482 -125122990 + MIR SINE MIR 60 256 -6 186 43 0 0 chr11 23660821 23660844 -125122628 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 302 333 63 0 chr11 23661330 23661456 -125122016 + L2 LINE L2 2916 3049 -223 41848 41 22 2 chr11 23661706 23667726 -125115746 - L1PA3 LINE L1 -5 6150 5 328 296 107 6 chr11 23667747 23667906 -125115566 + MIR SINE MIR 24 198 -64 598 218 43 41 chr11 23668601 23668785 -125114687 + MIR SINE MIR 57 240 -22 4711 148 33 22 chr11 23668785 23669602 -125113870 + LTR1B LTR ERV1 1 826 0 221 188 40 50 chr11 23669930 23670031 -125113441 + T-rich Low_complexity Low_complexity 2 101 0 6168 185 15 27 chr11 23670823 23671370 -125112102 + L1PA16 LINE L1 3862 4414 -1752 216 0 0 0 chr11 23671370 23671394 -125112078 + (CA)n Simple_repeat Simple_repeat 1 24 0 6168 185 15 27 chr11 23671394 23673175 -125110297 + L1PA16 LINE L1 4414 6157 -9 1772 239 109 0 chr11 23673221 23673661 -125109811 + MLT1E2 LTR MaLR 137 624 -2 212 200 60 0 chr11 23673785 23673835 -125109637 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1989 140 31 0 chr11 23675227 23675519 -125107953 - AluSx SINE Alu -11 301 1 1802 135 40 3 chr11 23676444 23676740 -125106732 - AluSq SINE Alu -6 307 1 889 147 16 16 chr11 23677184 23677374 -125106098 - L1MA8 LINE L1 -4 6287 6098 959 198 11 0 chr11 23677374 23677556 -125105916 - Tigger3(Golem) DNA MER2_type -14 3015 2832 1511 194 28 0 chr11 23677558 23677841 -125105631 + AluJo SINE Alu 1 291 -21 815 82 11 1 chr11 23677841 23677967 -125105505 - L1MA1 LINE L1 -296 5859 5724 238 333 53 9 chr11 23678298 23678412 -125105060 - MER5A DNA MER1_type -10 179 61 * 330 297 20 20 chr11 23678312 23678413 -125105059 + MER5A DNA MER1_type 39 139 -50 315 0 0 0 chr11 23678859 23678894 -125104578 + (TA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr11 23678907 23678932 -125104540 + (CA)n Simple_repeat Simple_repeat 2 26 0 2345 177 36 27 chr11 23678950 23679533 -125103939 + L1MB8 LINE L1 5590 6177 -1 2337 81 0 3 chr11 23679683 23679990 -125103482 - AluY SINE Alu -5 306 1 216 246 29 0 chr11 23680082 23680168 -125103304 + (TA)n Simple_repeat Simple_repeat 1 88 0 292 172 29 3 chr11 23680485 23680553 -125102919 - L1MB8 LINE L1 -199 5965 5894 218 215 0 15 chr11 23680804 23680869 -125102603 + (CATA)n Simple_repeat Simple_repeat 2 65 0 23 0 0 0 chr11 23681731 23681754 -125101718 + AT_rich Low_complexity Low_complexity 1 23 0 590 304 62 18 chr11 23682547 23682774 -125100698 + MIR SINE MIR 1 237 -25 474 250 50 0 chr11 23682949 23683069 -125100403 - MER94 DNA DNA -1 133 8 4176 184 23 15 chr11 23683326 23684186 -125099286 - L1 LINE L1 -1746 4400 3534 1321 158 0 5 chr11 23734231 23734434 -125049038 + AluSg/x SINE Alu 75 276 -36 279 0 0 0 chr11 23734439 23734470 -125049002 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 635 246 29 79 chr11 23734470 23734710 -125048762 + L1MB8 LINE L1 1551 1778 -4606 643 271 86 37 chr11 23734864 23735669 -125047803 + L1MB8 LINE L1 1826 2615 -3767 * 2378 291 43 47 chr11 23735655 23736401 -125047071 + L1MB8 LINE L1 5672 6414 0 349 198 81 0 chr11 23736404 23736490 -125046982 - MER53 DNA DNA -1 188 96 307 178 9 122 chr11 23736523 23736630 -125046842 + MER53 DNA DNA 95 189 0 2794 92 76 35 chr11 23736938 23737157 -125046315 + MLT2A2 LTR ERVL 1 209 -244 4914 64 17 0 chr11 23737157 23737828 -125045644 + L1PA8 LINE L1 5512 6193 0 2794 92 76 35 chr11 23737828 23738004 -125045468 + MLT2A2 LTR ERVL 209 420 -33 369 0 0 0 chr11 23738004 23738045 -125045427 + (TA)n Simple_repeat Simple_repeat 1 41 0 2794 92 76 35 chr11 23738045 23738081 -125045391 + MLT2A2 LTR ERVL 420 453 0 268 291 0 38 chr11 23738505 23738584 -125044888 - MARNA DNA Mariner -416 170 95 192 364 124 23 chr11 23738687 23738816 -125044656 - L2 LINE L2 -15 3257 3116 643 266 54 5 chr11 23739363 23739547 -125043925 + MLT1F1 LTR MaLR 351 543 -24 646 219 55 125 chr11 23739566 23739877 -125043595 - MLT1A1 LTR MaLR -75 290 2 1904 151 66 26 chr11 23740023 23740373 -125043099 + THE1B LTR MaLR 1 364 0 577 241 85 11 chr11 23740449 23740719 -125042753 + L1MB8 LINE L1 5010 5299 -847 344 321 54 33 chr11 23740888 23741072 -125042400 + MLT1J2 LTR MaLR 263 450 0 529 305 44 0 chr11 23741578 23741781 -125041691 - MIR SINE MIR -10 252 41 252 336 55 16 chr11 23743443 23743571 -125039901 + MIR SINE MIR 57 189 -73 21 0 0 0 chr11 23743622 23743643 -125039829 + AT_rich Low_complexity Low_complexity 1 21 0 530 263 114 31 chr11 23743825 23744053 -125039419 - MIR SINE MIR -1 261 15 189 107 0 0 chr11 23744721 23744749 -125038723 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 278 391 45 11 chr11 23745075 23745254 -125038218 - MIR SINE MIR -76 186 2 2558 104 8 8 chr11 23745669 23746043 -125037429 - THE1C LTR MaLR -1 374 1 1420 235 33 9 chr11 23746534 23746964 -125036508 + L1MB8 LINE L1 5692 6131 -47 180 0 0 0 chr11 23747466 23747486 -125035986 + (T)n Simple_repeat Simple_repeat 1 20 0 391 316 8 17 chr11 23747840 23747957 -125035515 - L2 LINE L2 -13 3300 3185 1491 299 169 15 chr11 23748116 23748992 -125034480 - L2 LINE L2 -33 3280 2243 2087 130 3 3 chr11 23749010 23749310 -125034162 + AluSx SINE Alu 2 301 -11 911 270 51 52 chr11 23749315 23749898 -125033574 - L2 LINE L2 -158 3155 2518 14810 27 1 1 chr11 23749991 23752521 -125030951 - L1PA3 LINE L1 0 6155 3627 232 324 103 55 chr11 23753267 23753412 -125030060 + L2 LINE L2 2581 2732 -582 410 328 30 10 chr11 23753435 23753633 -125029839 - MLT1K LTR MaLR -23 565 364 183 129 0 0 chr11 23754852 23754883 -125028589 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 5217 169 42 8 chr11 23755453 23756505 -125026967 + Tigger3b DNA MER2_type 3 1090 -141 315 50 0 0 chr11 23756543 23756583 -125026889 - AluY SINE Alu -196 105 66 40993 33 21 3 chr11 23756602 23762638 -125020834 - L1PA2 LINE L1 0 6155 3 689 226 0 0 chr11 23762654 23762791 -125020681 + Tigger3b DNA MER2_type 1095 1231 0 303 28 0 0 chr11 23762794 23762830 -125020642 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 224 112 15 chr11 23762878 23763012 -125020460 + MLT1J2 LTR MaLR 70 216 -234 3288 200 23 7 chr11 23763135 23763835 -125019637 - MER50 LTR ERV1 -23 711 1 425 324 51 5 chr11 23764123 23764321 -125019151 - MIR SINE MIR -17 245 34 661 332 80 43 chr11 23764660 23765220 -125018252 + L2 LINE L2 2730 3313 0 2443 80 23 0 chr11 23765260 23765561 -125017911 + AluSq SINE Alu 1 308 -5 358 323 89 6 chr11 23765581 23765739 -125017733 + MIR SINE MIR 5 175 -87 1071 270 0 0 chr11 23766648 23766907 -125016565 + MER77 LTR ERV1 344 602 -3 328 245 0 13 chr11 23767022 23767173 -125016299 + (TG)n Simple_repeat Simple_repeat 1 149 0 324 303 69 41 chr11 23767184 23767382 -125016090 - L2 LINE L2 -307 2965 2761 303 246 73 36 chr11 23767428 23767538 -125015934 + L1ME LINE L1 5727 5840 -281 294 164 0 0 chr11 23767627 23767682 -125015790 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 49 0 0 chr11 23767842 23767883 -125015589 + AT_rich Low_complexity Low_complexity 1 41 0 362 319 186 49 chr11 23767983 23768466 -125015006 - L2 LINE L2 -782 2532 2116 2126 57 0 8 chr11 23768466 23768729 -125014743 - AluY SINE Alu -10 301 41 362 319 186 49 chr11 23768729 23769036 -125014436 - L2 LINE L2 -1198 2116 1634 659 229 0 0 chr11 23769646 23769768 -125013704 - AluSg/x SINE Alu -27 283 162 1709 179 6 22 chr11 23769803 23770115 -125013357 - AluJb SINE Alu -5 307 1 24 32 0 0 chr11 23770124 23770155 -125013317 + AT_rich Low_complexity Low_complexity 1 31 0 199 377 29 43 chr11 23770513 23770651 -125012821 - MIR SINE MIR -112 150 15 180 361 33 16 chr11 23770819 23770880 -125012592 + L3b LINE CR1 1504 1565 -18 1574 232 183 35 chr11 23771430 23771811 -125011661 - MLT1E1 LTR MaLR 0 654 331 1498 138 30 0 chr11 23771811 23772079 -125011393 - L1MA4 LINE L1 -5 6295 6020 1574 232 183 35 chr11 23772079 23772267 -125011205 - MLT1E1 LTR MaLR -323 331 1 320 209 91 0 chr11 23773672 23773782 -125009690 - Charlie5 DNA MER1_type -27 2585 2466 1005 195 0 15 chr11 23774088 23774293 -125009179 + BaEV-int LTR ERV1 5290 5491 -1158 22 56 0 0 chr11 23774753 23774789 -125008683 + AT_rich Low_complexity Low_complexity 1 36 0 10444 24 1 1 chr11 23774790 23776073 -125007399 - L1P LINE L1 -1168 4978 3696 332 287 0 21 chr11 23776801 23776895 -125006577 - MLT1E2 LTR MaLR -92 532 441 713 285 61 26 chr11 23777094 23777415 -125006057 - MLT1E2 LTR MaLR -174 452 184 745 208 0 0 chr11 23777415 23777545 -125005927 + FLAM_A SINE Alu 1 130 -12 417 239 190 6 chr11 23777554 23777717 -125005755 - MLT1E2 LTR MaLR -460 194 2 3785 148 21 28 chr11 23778318 23779034 -125004438 + MER50 LTR ERV1 1 711 -23 23 0 0 0 chr11 23779227 23779250 -125004222 + AT_rich Low_complexity Low_complexity 1 23 0 38540 71 4 5 chr11 23779438 23785579 -124997893 + L1PA5 LINE L1 11 6148 -6 30 0 0 0 chr11 23785720 23785750 -124997722 + AT_rich Low_complexity Low_complexity 1 30 0 799 219 185 24 chr11 23785781 23786078 -124997394 + L1MD2 LINE L1 6005 6349 -10 440 165 0 47 chr11 23786086 23786171 -124997301 - FRAM SINE Alu -22 154 74 1665 74 4 4 chr11 23786271 23786500 -124996972 - L1PA6 LINE L1 -21 6133 5905 2352 160 10 0 chr11 23786999 23787398 -124996074 - MER57A LTR ERV1 0 403 1 421 265 23 15 chr11 23788069 23788201 -124995271 + LTR68 LTR ERV1 302 434 -306 531 172 0 0 chr11 23788257 23788350 -124995122 - L1MC/D LINE L1 -723 5636 5544 485 325 164 3 chr11 23788360 23788714 -124994758 + MER69 DNA AcHobo 136 546 -680 999 223 78 35 chr11 23788746 23789235 -124994237 + MER69 DNA AcHobo 2017 2526 0 3383 58 4 13 chr11 23789481 23789933 -124993539 - LTR7 LTR ERV1 -2 448 1 2327 82 48 13 chr11 23789933 23790310 -124993162 - HERVH LTR ERV1 0 7713 7324 1210 148 18 5 chr11 23790310 23790527 -124992945 - HERVH LTR ERV1 -1894 5819 5600 3936 145 21 3 chr11 23790528 23791178 -124992294 - HERVH LTR ERV1 -2564 5149 4488 3166 110 6 6 chr11 23791180 23791682 -124991790 - HERVH LTR ERV1 -3720 3993 3492 875 128 20 0 chr11 23791672 23791820 -124991652 - HERVH LTR ERV1 -4423 3290 3140 * 18492 104 19 12 chr11 23791799 23794775 -124988697 - HERVH LTR ERV1 -4718 2995 1 3399 58 4 13 chr11 23794777 23795229 -124988243 - LTR7 LTR ERV1 -2 448 1 286 307 57 0 chr11 23795932 23796020 -124987452 - L2 LINE L2 0 3272 3180 228 266 266 0 chr11 23796355 23796468 -124987004 - MLT1H LTR MaLR -32 517 375 573 311 129 15 chr11 23796723 23796987 -124986485 + L2 LINE L2 1382 1675 -1639 222 191 0 0 chr11 23797417 23797464 -124986008 + (TG)n Simple_repeat Simple_repeat 2 48 0 264 191 17 104 chr11 23797512 23797627 -124985845 + L1ME4a LINE L1 5964 6068 -53 431 326 125 8 chr11 23797736 23798080 -124985392 + MLT1F LTR MaLR 1 346 -196 611 339 39 9 chr11 23798157 23798390 -124985082 + MIR SINE MIR 2 241 -21 213 39 0 0 chr11 23798974 23799000 -124984472 + (T)n Simple_repeat Simple_repeat 1 26 0 7744 20 0 2 chr11 23799025 23800339 -124983133 - L1PA3 LINE L1 -1 6154 4842 387 0 0 0 chr11 23800889 23800932 -124982540 + (CA)n Simple_repeat Simple_repeat 1 43 0 295 116 58 14 chr11 23801066 23801135 -124982337 - MER116 DNA Mariner -3 77 6 21 36 0 0 chr11 23802243 23802271 -124981201 + AT_rich Low_complexity Low_complexity 1 28 0 570 197 68 83 chr11 23802821 23803085 -124980387 - LTR37B LTR ERV1 -55 413 154 289 292 0 0 chr11 23803228 23803293 -124980179 + L2 LINE L2 3235 3299 -14 210 71 0 0 chr11 23803297 23803325 -124980147 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 2183 156 5 24 chr11 23803415 23803786 -124979686 - THE1B LTR MaLR 0 364 1 11142 101 15 9 chr11 23803786 23805356 -124978116 - THE1B-int LTR MaLR 0 1580 1 614 138 0 0 chr11 23805376 23805463 -124978009 - THE1B LTR MaLR -277 87 1 673 181 15 0 chr11 23805650 23805783 -124977689 - L1MA9 LINE L1 -145 6167 6033 824 209 25 0 chr11 23805873 23806031 -124977441 + FAM SINE Alu 1 162 -13 286 319 60 17 chr11 23806258 23806374 -124977098 + L2 LINE L2 3187 3307 -6 239 265 15 15 chr11 23807325 23807393 -124976079 - L2 LINE L2 -84 3229 3162 4300 182 107 163 chr11 23807502 23809362 -124974110 + MER52A LTR ERV1 1 1754 -1 271 190 266 38 chr11 23809458 23809537 -124973935 + FRAM SINE Alu 1 91 -75 28 48 0 0 chr11 23811829 23811871 -124971601 + AT_rich Low_complexity Low_complexity 1 42 0 231 125 0 0 chr11 23812233 23812273 -124971199 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 197 16 0 chr11 23813422 23813483 -124969989 + (TA)n Simple_repeat Simple_repeat 2 63 0 3195 158 8 8 chr11 23813937 23814464 -124969008 - MER1A DNA MER1_type 0 527 1 304 283 64 35 chr11 23814621 23814794 -124968678 + MIR SINE MIR 58 235 -27 772 148 59 0 chr11 23815833 23815968 -124967504 - L1MA7 LINE L1 -365 5926 5784 325 193 0 24 chr11 23815968 23816034 -124967438 + L1MA7 LINE L1 6209 6289 -2 245 309 121 34 chr11 23816181 23816446 -124967026 + L1MCc LINE L1 112 399 -6024 964 243 57 7 chr11 23816496 23816776 -124966696 - MER58B DNA MER1_type -42 299 6 1399 245 107 55 chr11 23816842 23817384 -124966088 - MLT1E2 LTR MaLR -5 621 52 188 276 52 17 chr11 23818158 23818216 -124965256 + MIR SINE MIR 82 141 -67 1493 91 0 0 chr11 23818769 23818967 -124964505 + AluY SINE Alu 51 248 -63 223 258 0 15 chr11 23819666 23819732 -124963740 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 2239 253 61 39 chr11 23820376 23820594 -124962878 + L1ME2 LINE L1 4524 4736 -1428 1607 163 0 8 chr11 23820594 23820852 -124962620 + AluJb SINE Alu 1 256 -56 2239 253 61 39 chr11 23820852 23822220 -124961252 + L1ME2 LINE L1 4736 6145 -19 20326 52 12 2 chr11 23822972 23826335 -124957137 + L1PA5 LINE L1 2780 6152 -2 25 0 0 0 chr11 23827308 23827333 -124956139 + AT_rich Low_complexity Low_complexity 1 25 0 346 275 55 77 chr11 23827837 23828019 -124955453 - MIR SINE MIR -64 198 21 1832 153 7 7 chr11 23828348 23828629 -124954843 - AluJb SINE Alu -31 281 1 321 331 97 26 chr11 23829272 23829426 -124954046 - L2 LINE L2 -1 3271 3107 440 147 13 0 chr11 23830136 23830211 -124953261 - MER4D LTR ERV1 0 903 828 1613 186 3 59 chr11 23830460 23830814 -124952658 - MER4E LTR ERV1 -79 700 367 23 0 0 0 chr11 23830861 23830884 -124952588 + AT_rich Low_complexity Low_complexity 1 23 0 478 229 0 0 chr11 23831538 23831621 -124951851 + MER2 DNA MER2_type 2 84 -261 * 582 145 23 100 chr11 23831615 23831815 -124951657 - MER67C LTR ERV1 -357 157 72 388 279 115 44 chr11 23831938 23832211 -124951261 + MLT1H LTR MaLR 189 547 -2 1127 230 111 47 chr11 23832515 23833053 -124950419 + LTR24B LTR ERV1 12 569 -7 220 200 20 0 chr11 23834388 23834438 -124949034 + (CA)n Simple_repeat Simple_repeat 1 51 0 280 299 79 85 chr11 23834507 23834684 -124948788 + MIR SINE MIR 71 246 -16 344 356 82 0 chr11 23834745 23834891 -124948581 - L2 LINE L2 0 3272 3115 218 279 73 44 chr11 23835695 23835763 -124947709 - MIR SINE MIR -171 91 22 894 187 69 29 chr11 23836041 23836287 -124947185 - LTR48B LTR ERV1 -5 639 384 1193 206 56 12 chr11 23836507 23836759 -124946713 - LTR48B LTR ERV1 -379 265 3 424 215 21 21 chr11 23836769 23836862 -124946610 + MIR SINE MIR 119 211 -51 2266 145 43 43 chr11 23836914 23837334 -124946138 + LTR49 LTR ERV1 7 426 -169 3162 183 45 16 chr11 23837334 23837961 -124945511 - MER39B LTR ERV1 0 653 9 649 183 38 12 chr11 23837960 23838137 -124945335 + LTR49 LTR ERV1 473 593 -2 * 3076 241 58 28 chr11 23838143 23839693 -124943779 - L1MC/D LINE L1 -693 5926 4336 658 254 35 45 chr11 23839718 23839919 -124943553 - MLT1D LTR MaLR -302 203 5 1112 232 43 55 chr11 23839934 23840255 -124943217 - L1MDa LINE L1 -3654 2752 2429 408 88 0 0 chr11 23840255 23840312 -124943160 + (TG)n Simple_repeat Simple_repeat 2 58 0 1112 232 43 55 chr11 23840312 23840682 -124942790 - L1MDa LINE L1 -3977 2429 2094 259 286 50 8 chr11 23840745 23840864 -124942608 + L1MDa LINE L1 2042 2165 -4375 294 219 73 0 chr11 23840878 23840960 -124942512 - L1MDa LINE L1 -4530 1876 1789 * 328 314 36 22 chr11 23840942 23841079 -124942393 - L1MDa LINE L1 -5923 486 348 719 290 40 28 chr11 23841119 23841371 -124942101 - L1MDa LINE L1 -6147 262 8 204 40 0 0 chr11 23841427 23841452 -124942020 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr11 23842171 23842193 -124941279 + AT_rich Low_complexity Low_complexity 1 22 0 2016 127 14 3 chr11 23843375 23843659 -124939813 - AluJb SINE Alu -25 287 1 204 125 0 0 chr11 23843825 23843857 -124939615 + (TC)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr11 23843857 23843887 -124939585 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 23843938 23843967 -124939505 + AT_rich Low_complexity Low_complexity 1 29 0 1182 236 30 43 chr11 23844248 23844616 -124938856 - MLT1A1 LTR MaLR -2 363 1 36 40 0 0 chr11 23844988 23845038 -124938434 + AT_rich Low_complexity Low_complexity 1 50 0 1779 176 3 0 chr11 23845057 23845346 -124938126 - AluSx SINE Alu -22 290 1 1231 224 82 45 chr11 23845867 23846247 -124937225 - MSTD LTR MaLR 0 396 3 858 301 37 71 chr11 23847716 23847929 -124935543 - MER115 DNA AcHobo 0 693 501 1975 125 20 10 chr11 23847929 23848224 -124935248 + AluSg SINE Alu 1 298 -12 858 301 37 71 chr11 23848224 23848446 -124935026 - MER115 DNA AcHobo -192 501 273 837 250 26 44 chr11 23848670 23848898 -124934574 + MIR SINE MIR 34 257 -5 241 185 19 19 chr11 23850634 23850688 -124932784 + CT-rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr11 23850693 23850721 -124932751 + AT_rich Low_complexity Low_complexity 1 28 0 497 322 53 33 chr11 23851056 23851301 -124932171 - MLT1J2 LTR MaLR -145 305 56 2263 152 28 30 chr11 23851512 23851939 -124931533 - MSTB LTR MaLR 0 426 1 292 346 75 9 chr11 23852341 23852448 -124931024 + MER91A DNA MER1_type 45 158 -38 243 375 11 0 chr11 23852646 23852734 -124930738 + MIR3 SINE MIR 113 201 -7 2355 155 18 56 chr11 23852842 23853357 -124930115 - L1MA4 LINE L1 -6 6294 5800 811 175 0 22 chr11 23853411 23853548 -124929924 + FRAM SINE Alu 16 149 -27 8821 205 30 12 chr11 23853558 23854225 -124929247 - L1MA4 LINE L1 -1289 4857 4203 237 65 0 0 chr11 23854225 23854256 -124929216 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8821 205 30 12 chr11 23854256 23855273 -124928199 - L1MA4 LINE L1 -1943 4203 3127 2474 45 13 10 chr11 23855273 23855581 -124927891 - AluY SINE Alu -2 309 1 8821 205 30 12 chr11 23855581 23855952 -124927520 - L1MA4 LINE L1 -3019 3127 2764 22 94 0 0 chr11 23856029 23856093 -124927379 + AT_rich Low_complexity Low_complexity 1 64 0 2073 142 3 0 chr11 23856294 23856604 -124926868 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr11 23856965 23856987 -124926485 + AT_rich Low_complexity Low_complexity 1 22 0 413 205 36 0 chr11 23857234 23857346 -124926126 + L1MA7 LINE L1 6174 6289 -2 26 74 0 0 chr11 23857347 23857401 -124926071 + AT_rich Low_complexity Low_complexity 1 54 0 529 355 14 5 chr11 23857606 23857826 -124925646 + MIR SINE MIR 31 252 -10 183 324 102 19 chr11 23857863 23857971 -124925501 - L2 LINE L2 -33 3280 3164 301 234 130 0 chr11 23858543 23858620 -124924852 - HERV16 LTR ERVL -4287 709 623 24 0 0 0 chr11 23858951 23858975 -124924497 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 23859228 23859276 -124924196 + AT_rich Low_complexity Low_complexity 1 48 0 197 205 0 26 chr11 23859872 23859911 -124923561 - L2 LINE L2 -15 3298 3261 726 205 12 6 chr11 23859956 23860122 -124923350 + L1MA4 LINE L1 4238 4404 -1742 678 101 0 0 chr11 23860128 23860237 -124923235 - L1P LINE L1 -3680 2466 2358 * 5154 167 12 14 chr11 23860233 23861235 -124922237 + L1MA4 LINE L1 5295 6300 0 5006 242 26 14 chr11 23861413 23862850 -124920622 - L1 LINE L1 -2261 3885 2431 765 220 57 0 chr11 23862845 23863004 -124920468 + L1MA9 LINE L1 5914 6081 -231 * 406 186 13 1 chr11 23863009 23863107 -124920365 + L1MA9 LINE L1 6183 6290 -9 271 307 72 48 chr11 23863153 23863319 -124920153 - MIR SINE MIR -46 216 47 325 151 118 32 chr11 23863443 23863536 -124919936 - MIR SINE MIR -65 197 97 318 253 127 40 chr11 23863646 23863796 -124919676 + MLT1C LTR MaLR 66 228 -239 421 296 37 7 chr11 23863797 23863932 -124919540 + MIR SINE MIR 17 155 -107 1008 192 0 13 chr11 23864583 23864817 -124918655 + L1MA4 LINE L1 6069 6299 -1 7344 40 0 0 chr11 23864871 23865936 -124917536 - L1PA5 LINE L1 0 6154 5089 8616 34 0 0 chr11 23865936 23866966 -124916506 + L1PA5 LINE L1 4071 5100 -1046 984 363 76 32 chr11 23867362 23867614 -124915858 - MER115 DNA AcHobo -1 692 453 2219 118 0 6 chr11 23867614 23867927 -124915545 - AluY SINE Alu 0 311 1 984 363 76 32 chr11 23867927 23868302 -124915170 - MER115 DNA AcHobo -240 453 37 23 0 0 0 chr11 23868997 23869020 -124914452 + AT_rich Low_complexity Low_complexity 1 23 0 5264 82 54 5 chr11 23869696 23870440 -124913032 - LTR17 LTR ERV1 0 780 1 21 36 0 0 chr11 23870474 23870502 -124912970 + AT_rich Low_complexity Low_complexity 1 28 0 426 329 41 0 chr11 23870674 23870820 -124912652 + MIR SINE MIR 111 262 0 515 246 108 11 chr11 23872875 23873135 -124910337 + MER69 DNA AcHobo 2090 2374 -152 26 50 0 0 chr11 23873135 23873175 -124910297 + AT_rich Low_complexity Low_complexity 1 40 0 70 48 0 0 chr11 23873210 23873315 -124910157 + AT_rich Low_complexity Low_complexity 1 105 0 332 211 32 21 chr11 23873325 23873420 -124910052 + MER69 DNA AcHobo 2414 2509 -17 328 265 125 52 chr11 23873604 23873740 -124909732 - MIR SINE MIR -83 179 34 22 0 0 0 chr11 23873965 23873987 -124909485 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 23874062 23874090 -124909382 + AT_rich Low_complexity Low_complexity 1 28 0 394 267 42 0 chr11 23874117 23874282 -124909190 + L1M4 LINE L1 2814 2985 -3161 3138 251 43 13 chr11 23874297 23875398 -124908074 + L1M4 LINE L1 2446 3579 -2567 1863 144 29 16 chr11 23875398 23875704 -124907768 + AluSx SINE Alu 1 310 -2 36 87 0 0 chr11 23876014 23876106 -124907366 + AT_rich Low_complexity Low_complexity 1 92 0 232 338 58 45 chr11 23876277 23876431 -124907041 - L2 LINE L2 -1 3271 3116 344 242 0 22 chr11 23876543 23876634 -124906838 - MER117 DNA MER1_type -102 95 7 216 255 0 0 chr11 23877496 23877547 -124905925 + L2 LINE L2 3263 3313 0 376 290 16 75 chr11 23877711 23877897 -124905575 - MER5B DNA MER1_type 0 178 4 207 69 0 0 chr11 23878886 23878915 -124904557 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2168 96 0 3 chr11 23878997 23879321 -124904151 + AluSx SINE Alu 1 323 0 242 294 59 39 chr11 23879546 23879648 -124903824 - MLT2E LTR ERVL -490 138 35 1600 206 18 97 chr11 23879973 23880478 -124902994 - MLT1C LTR MaLR -2 465 1 23 86 0 0 chr11 23881187 23881245 -124902227 + AT_rich Low_complexity Low_complexity 1 58 0 199 324 14 0 chr11 23881545 23881616 -124901856 - MIR SINE MIR -2 260 189 203 263 70 0 chr11 23881644 23881701 -124901771 + MIR SINE MIR 81 141 -67 268 286 205 18 chr11 23882363 23882475 -124900997 - MIR SINE MIR -112 150 18 235 321 9 0 chr11 23882625 23882737 -124900735 + (TA)n Simple_repeat Simple_repeat 1 113 0 304 278 10 31 chr11 23882854 23882951 -124900521 + MIR SINE MIR 161 255 -7 21 0 0 0 chr11 23883999 23884020 -124899452 + AT_rich Low_complexity Low_complexity 1 21 0 2634 24 0 0 chr11 23884509 23884805 -124898667 + AluY SINE Alu 1 296 -15 2328 102 0 3 chr11 23886406 23886719 -124896753 + AluSx SINE Alu 1 312 0 1902 236 106 25 chr11 23887776 23888332 -124895140 + MLT1E3 LTR MaLR 5 605 -19 201 351 75 0 chr11 23888425 23888519 -124894953 + MIR SINE MIR 106 206 -56 986 293 0 12 chr11 23890220 23890476 -124892996 + HUERS-P1 LTR ERV1 5966 6218 -45 925 193 80 72 chr11 23890499 23890763 -124892709 + LTR8A LTR ERV1 1 266 -461 5767 116 19 9 chr11 23890793 23891965 -124891507 + L1PA14 LINE L1 4975 6161 0 1539 172 94 50 chr11 23891999 23892383 -124891089 + LTR8A LTR ERV1 274 674 -53 23 68 0 0 chr11 23893046 23893090 -124890382 + AT_rich Low_complexity Low_complexity 1 44 0 27 73 0 0 chr11 23893383 23893438 -124890034 + AT_rich Low_complexity Low_complexity 1 55 0 183 42 0 0 chr11 23893750 23893774 -124889698 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 1993 100 6 70 chr11 23893786 23894115 -124889357 - AluSg SINE Alu -2 308 1 587 300 112 9 chr11 23894220 23894453 -124889019 + MIR SINE MIR 6 262 0 399 268 39 78 chr11 23894470 23894828 -124888644 - HAL1 LINE L1 -922 1585 1242 23 68 0 0 chr11 23896098 23896142 -124887330 + AT_rich Low_complexity Low_complexity 1 44 0 30 59 0 0 chr11 23896267 23896318 -124887154 + AT_rich Low_complexity Low_complexity 1 51 0 2602 174 17 14 chr11 23896318 23896836 -124886636 - L1 LINE L1 -1541 4605 4086 * 4477 184 12 14 chr11 23896833 23897493 -124885979 + L1PB4 LINE L1 4641 5301 -855 351 0 0 0 chr11 23897493 23897532 -124885940 + (CA)n Simple_repeat Simple_repeat 2 40 0 4477 184 12 14 chr11 23897532 23897680 -124885792 + L1PB4 LINE L1 5301 5448 -708 2499 146 26 5 chr11 23897680 23898099 -124885373 - MSTA LTR MaLR 0 428 1 4477 184 12 14 chr11 23898099 23898801 -124884671 + L1PB4 LINE L1 5448 6148 -8 4304 230 14 27 chr11 23950084 23951227 -124832245 - L1P LINE L1 -3284 2862 1735 182 62 31 0 chr11 23953363 23953395 -124830077 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 207 289 53 0 chr11 23953771 23953847 -124829625 - MIR SINE MIR -64 198 119 232 267 17 0 chr11 23953873 23953993 -124829479 + (TA)n Simple_repeat Simple_repeat 1 122 0 627 148 0 86 chr11 23954370 23954498 -124828974 - L1PA8A LINE L1 0 6131 6015 364 111 0 0 chr11 23954498 23954552 -124828920 - L1PA8 LINE L1 -119 6053 6000 258 342 84 19 chr11 23954831 23954986 -124828486 - MIR3 SINE MIR -12 196 32 624 263 84 0 chr11 23955220 23955399 -124828073 + MLT1L LTR MaLR 370 563 -52 3480 199 63 47 chr11 23955547 23956784 -124826688 - L1MD1 LINE L1 -2 6634 5378 340 226 129 0 chr11 23957130 23957223 -124826249 - L1MD1 LINE L1 -1217 5323 5219 286 285 79 6 chr11 23957224 23957389 -124826083 + L1M4 LINE L1 4652 4828 -1318 453 194 86 0 chr11 23957404 23957543 -124825929 - L1MD1 LINE L1 -4816 1724 1574 21098 116 23 4 chr11 23957679 23959963 -124823509 - L1PA8A LINE L1 -148 5983 3592 366 23 0 0 chr11 23959963 23960006 -124823466 + (TG)n Simple_repeat Simple_repeat 1 43 0 21098 116 23 4 chr11 23960006 23961678 -124821794 - L1PA8A LINE L1 -2539 3592 1952 1855 172 7 0 chr11 23962221 23962518 -124820954 - AluSx SINE Alu -10 302 4 216 0 0 0 chr11 23962575 23962599 -124820873 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1919 151 0 3 chr11 23963245 23963536 -124819936 - AluSx SINE Alu -11 301 12 4424 41 0 0 chr11 23963552 23964086 -124819386 + L1PA4 LINE L1 5621 6154 -1 22 0 0 0 chr11 23964101 23964123 -124819349 + AT_rich Low_complexity Low_complexity 1 22 0 229 233 0 33 chr11 23965000 23965090 -124818382 - MER103 DNA DNA -75 91 5 739 295 124 7 chr11 23965299 23965597 -124817875 + LTR16C LTR ERVL 159 491 0 298 244 128 1 chr11 23965847 23965984 -124817488 - MER67D LTR ERV1 -29 485 306 1469 172 6 83 chr11 23966031 23966368 -124817104 - MER67D LTR ERV1 -203 311 1 186 356 106 0 chr11 23966459 23966591 -124816881 + MIR SINE MIR 73 218 -44 1191 214 67 36 chr11 23966672 23967003 -124816469 - MLT1B LTR MaLR -49 341 1 228 111 0 0 chr11 23968212 23968248 -124815224 + (CA)n Simple_repeat Simple_repeat 2 37 0 189 263 70 79 chr11 23968300 23968414 -124815058 - MIR SINE MIR -37 225 113 309 312 28 35 chr11 23968600 23968741 -124814731 + MIR SINE MIR 116 255 -7 329 117 17 0 chr11 23970084 23970144 -124813328 + CT-rich Low_complexity Low_complexity 1 61 0 3882 210 46 36 chr11 23970289 23971376 -124812096 - L1MC1 LINE L1 -304 6309 5185 477 0 0 0 chr11 23971376 23971429 -124812043 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3882 210 46 36 chr11 23971429 23972270 -124811202 - L1MC1 LINE L1 -1428 5185 4354 * 5366 183 47 61 chr11 23972266 23973553 -124809919 - L1MC1 LINE L1 -5154 1272 5 672 359 47 10 chr11 23973609 23973910 -124809562 - L1MDb LINE L1 -6086 323 12 228 246 49 41 chr11 23974328 23974450 -124809022 + L1ME4a LINE L1 5959 6081 -40 466 309 50 42 chr11 23974550 23974809 -124808663 + MIR SINE MIR 2 262 0 267 386 68 14 chr11 23975676 23975883 -124807589 + MIR SINE MIR 23 240 -22 275 237 11 0 chr11 23975925 23976018 -124807454 + (TA)n Simple_repeat Simple_repeat 2 95 0 320 344 62 26 chr11 23976916 23977111 -124806361 + MIR SINE MIR 11 212 -50 1234 96 6 6 chr11 23977189 23977367 -124806105 + L1MA1 LINE L1 6121 6298 -4 765 268 22 84 chr11 23977396 23977897 -124805575 + HAL1 LINE L1 1995 2464 -43 1150 204 35 0 chr11 23977897 23978127 -124805345 - L1MB1 LINE L1 -1 6167 5930 22 35 0 0 chr11 23978565 23978594 -124804878 + AT_rich Low_complexity Low_complexity 1 29 0 332 263 263 0 chr11 23979273 23979410 -124804062 - MIR SINE MIR -49 213 41 699 144 44 66 chr11 23979787 23979968 -124803504 + pTR5 LTR ERV1 743 919 -1519 461 16 2 0 chr11 23980183 23980246 -124803226 + pTR5 LTR ERV1 334 2438 0 311 257 129 0 chr11 23980246 23980347 -124803125 - L2 LINE L2 -796 2518 2405 582 204 59 8 chr11 23980485 23980657 -124802815 - L1M4 LINE L1 -2623 3523 3346 1835 297 89 27 chr11 23981330 23982350 -124801122 + L2 LINE L2 2218 3312 -1 22 0 0 0 chr11 23982851 23982873 -124800599 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 23983253 23983289 -124800183 + GC_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 23985183 23985213 -124798259 + AT_rich Low_complexity Low_complexity 1 30 0 204 125 0 0 chr11 23985468 23985500 -124797972 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 339 113 57 chr11 23985563 23985740 -124797732 + MIR3 SINE MIR 19 205 -3 2073 125 3 7 chr11 23986775 23987079 -124796393 + AluSx SINE Alu 1 303 -9 1903 173 47 9 chr11 23989598 23990050 -124793422 - L1MA8 LINE L1 -4 7706 7238 1580 203 3 19 chr11 23990070 23990103 -124793369 - AluJo SINE Alu -6 306 274 2051 121 63 30 chr11 23990103 23990466 -124793006 + THE1C LTR MaLR 1 375 0 1580 203 3 19 chr11 23990466 23990743 -124792729 - AluJo SINE Alu -38 274 1 11221 190 45 10 chr11 23990747 23993717 -124789755 - L1MA8 LINE L1 -467 7243 4171 601 245 50 6 chr11 23993722 23993881 -124789591 + L1M4 LINE L1 2607 2772 -3374 2471 235 47 3 chr11 23993895 23994605 -124788867 + L1M4 LINE L1 3284 4024 -2122 21 0 0 0 chr11 23994605 23994626 -124788846 + AT_rich Low_complexity Low_complexity 1 21 0 311 43 0 22 chr11 23994759 23994805 -124788667 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 9623 30 16 0 chr11 23994805 23996706 -124786766 - L1PA3 LINE L1 -24 6131 4199 * 13751 28 2 0 chr11 23996671 23998334 -124785138 + L1PA3 LINE L1 2567 4232 -1914 2495 233 31 12 chr11 23998316 23999195 -124784277 - L1MA8 LINE L1 -3365 4200 3306 * 1864 183 47 48 chr11 23999328 23999887 -124783585 - L1 LINE L1 -2895 4670 4113 * 2536 202 22 73 chr11 23999878 24000661 -124782811 - L1 LINE L1 -3810 3755 3036 1259 170 53 82 chr11 24000661 24000979 -124782493 - AluJo SINE Alu -3 309 1 2536 202 22 73 chr11 24000979 24001248 -124782224 - L1 LINE L1 -4529 3036 2755 21 0 0 0 chr11 24001270 24001291 -124782181 + AT_rich Low_complexity Low_complexity 1 21 0 231 61 0 0 chr11 24001337 24001370 -124782102 + (TG)n Simple_repeat Simple_repeat 1 33 0 2105 222 107 0 chr11 24001764 24002278 -124781194 - LTR36 LTR ERV1 -2 609 41 309 176 121 22 chr11 24002282 24002373 -124781099 - LTR36 LTR ERV1 -511 100 1 224 326 53 32 chr11 24002688 24002783 -124780689 + MIR SINE MIR 49 145 -63 1955 136 0 7 chr11 24003598 24003900 -124779572 - AluSx SINE Alu -12 300 1 5694 82 4 13 chr11 24003959 24004727 -124778745 + LTR17 LTR ERV1 1 761 -19 21 0 0 0 chr11 24004902 24004923 -124778549 + AT_rich Low_complexity Low_complexity 1 21 0 198 347 13 47 chr11 24005215 24005365 -124778107 + MIR SINE MIR 68 212 -50 331 308 25 58 chr11 24005448 24005568 -124777904 - L2 LINE L2 -8 3305 3190 1369 239 66 58 chr11 24006451 24006952 -124776520 - MLT1D LTR MaLR 0 505 1 457 281 41 35 chr11 24007488 24007659 -124775813 - MIR SINE MIR -82 180 9 443 18 18 0 chr11 24008169 24008226 -124775246 - L1PA5 LINE L1 -1320 4826 4769 6932 47 1 2 chr11 24008230 24009497 -124773975 + L1PA5 LINE L1 4840 6105 -49 813 185 6 17 chr11 24009635 24009808 -124773664 + AluSg/x SINE Alu 140 310 0 24 67 0 0 chr11 24010245 24010290 -124773182 + AT_rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr11 24010577 24010606 -124772866 + (TC)n Simple_repeat Simple_repeat 2 30 0 221 339 16 79 chr11 24012125 24012252 -124771220 - MIR3 SINE MIR -75 133 15 25 0 0 0 chr11 24012285 24012310 -124771162 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr11 24012338 24012381 -124771091 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 24013185 24013214 -124770258 + AT_rich Low_complexity Low_complexity 1 29 0 187 316 26 40 chr11 24014092 24014168 -124769304 - MIR SINE MIR -186 76 2 388 235 134 8 chr11 24014188 24014307 -124769165 + MER45A DNA AcHobo 44 177 -1 214 386 71 33 chr11 24015459 24015643 -124767829 - L2 LINE L2 -251 3062 2872 1186 96 56 20 chr11 24015782 24015980 -124767492 - L1PA8 LINE L1 -10 6162 5958 22 35 0 0 chr11 24016331 24016360 -124767112 + AT_rich Low_complexity Low_complexity 1 29 0 184 304 120 54 chr11 24016641 24016733 -124766739 - L2 LINE L2 -9 3263 3166 1306 276 59 52 chr11 24016839 24017375 -124766097 - MLT1F LTR MaLR -3 552 1 233 245 16 0 chr11 24017377 24017446 -124766026 - MLT1F-int LTR MaLR -2 1727 1306 287 210 108 132 chr11 24017521 24017688 -124765784 - MLT1F-int LTR MaLR -173 1198 1036 45 19 0 0 chr11 24017961 24018013 -124765459 + AT_rich Low_complexity Low_complexity 1 52 0 51 31 0 0 chr11 24019573 24019638 -124763834 + AT_rich Low_complexity Low_complexity 1 65 0 584 211 53 70 chr11 24019764 24019935 -124763537 - MLT1A2 LTR MaLR -206 168 1 522 341 73 18 chr11 24020220 24020493 -124762979 + L2 LINE L2 2654 2941 -373 342 115 0 0 chr11 24020964 24021025 -124762447 + (TC)n Simple_repeat Simple_repeat 2 62 0 300 27 0 0 chr11 24021025 24021062 -124762410 + (CA)n Simple_repeat Simple_repeat 1 37 0 223 332 85 40 chr11 24021406 24021605 -124761867 + L3 LINE CR1 1011 1218 -359 193 326 148 0 chr11 24023682 24023817 -124759655 + MIR SINE MIR 77 231 -31 28 0 0 0 chr11 24024052 24024080 -124759392 + AT_rich Low_complexity Low_complexity 1 28 0 238 123 35 0 chr11 24025055 24025112 -124758360 + (TA)n Simple_repeat Simple_repeat 1 59 0 25 0 0 0 chr11 24025299 24025324 -124758148 + AT_rich Low_complexity Low_complexity 1 25 0 933 246 142 28 chr11 24025347 24025664 -124757808 - MLT1A2 LTR MaLR -4 370 18 3127 169 21 14 chr11 24026181 24026809 -124756663 - L1MA8 LINE L1 0 6291 5660 23 0 0 0 chr11 24026877 24026900 -124756572 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 24027259 24027282 -124756190 + AT_rich Low_complexity Low_complexity 1 23 0 192 388 0 0 chr11 24028167 24028234 -124755238 + MIR SINE MIR 18 84 -178 591 243 81 24 chr11 24028246 24028456 -124755016 + L1ME2 LINE L1 3906 4127 -2019 * 647 242 88 56 chr11 24028452 24028948 -124754524 + L1ME2 LINE L1 4996 5515 -649 384 194 0 75 chr11 24028992 24029085 -124754387 + MER58A DNA MER1_type 47 132 0 245 290 0 0 chr11 24029089 24029151 -124754321 + MER58A DNA MER1_type 162 223 -1 1576 252 76 26 chr11 24029166 24029769 -124753703 + L1ME2 LINE L1 5522 6154 -10 1677 185 79 5 chr11 24030944 24031322 -124752150 + L1PA13 LINE L1 2353 2758 -3388 5892 190 40 15 chr11 24031322 24033344 -124750128 + L1PA13 LINE L1 4099 6162 -1 237 224 15 30 chr11 24034379 24034446 -124749026 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 714 283 136 18 chr11 24034483 24034755 -124748717 + L2 LINE L2 2998 3301 -12 3279 164 39 8 chr11 24034782 24035405 -124748067 + MER73 LTR ERVL 1 642 -2 186 43 0 0 chr11 24035748 24035771 -124747701 + (A)n Simple_repeat Simple_repeat 1 23 0 782 173 0 0 chr11 24036401 24036551 -124746921 + L1 LINE L1 3259 3408 -2738 1901 164 7 0 chr11 24037150 24037454 -124746018 - AluSx SINE Alu -6 306 1 2305 82 20 0 chr11 24038115 24038418 -124745054 + AluY SINE Alu 1 309 -2 183 295 16 108 chr11 24039958 24040087 -124743385 - L2 LINE L2 -237 3035 2919 354 23 0 0 chr11 24041338 24041381 -124742091 + (CA)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr11 24042099 24042129 -124741343 + AT_rich Low_complexity Low_complexity 1 30 0 44 46 0 0 chr11 24042345 24042410 -124741062 + AT_rich Low_complexity Low_complexity 1 65 0 185 333 54 21 chr11 24042608 24042701 -124740771 + L2 LINE L2 2443 2538 -776 36 87 0 0 chr11 24042861 24042953 -124740519 + AT_rich Low_complexity Low_complexity 1 92 0 437 243 75 29 chr11 24043094 24043267 -124740205 + MIR SINE MIR 82 262 0 1033 72 7 33 chr11 24044722 24044875 -124738597 + L1PA7 LINE L1 6006 6154 0 566 197 0 0 chr11 24045443 24045570 -124737902 + L1MA5 LINE L1 3032 3158 -2988 4696 163 31 27 chr11 24045570 24046470 -124737002 + L1MA5 LINE L1 5397 6300 0 714 277 78 3 chr11 24046473 24046845 -124736627 - MER69 DNA AcHobo -117 2409 2010 450 353 68 4 chr11 24046843 24047092 -124736380 - MER69 DNA AcHobo -1958 568 304 * 1052 239 5 69 chr11 24047281 24047657 -124735815 - MLT1A2 LTR MaLR 0 374 23 348 24 0 0 chr11 24048527 24048568 -124734904 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 233 123 14 chr11 24048977 24049050 -124734422 + MIR SINE MIR 38 118 -90 202 347 69 0 chr11 24049803 24049875 -124733597 - L2 LINE L2 -13 3259 3183 24 85 0 0 chr11 24050728 24050787 -124732685 + AT_rich Low_complexity Low_complexity 1 59 0 415 162 9 81 chr11 24051956 24052067 -124731405 + L1M1 LINE L1 16 118 -7447 * 11521 166 15 5 chr11 24052066 24054531 -124728941 + L1M1 LINE L1 445 3035 -4530 239 297 62 0 chr11 24054699 24054763 -124728709 + MER91C DNA MER1_type 43 110 -30 267 299 22 66 chr11 24054789 24054926 -124728546 + L2 LINE L2 3182 3312 -1 2709 85 3 0 chr11 24055449 24055803 -124727669 + THE1A LTR MaLR 1 355 0 2173 242 64 22 chr11 24056271 24056867 -124726605 + MLT1E2 LTR MaLR 6 626 0 184 219 96 41 chr11 24056911 24056961 -124726511 - L2 LINE L2 -83 3230 3173 974 228 31 97 chr11 24056961 24057352 -124726120 - MLT1A1 LTR MaLR 0 365 1 184 219 96 41 chr11 24057352 24057374 -124726098 - L2 LINE L2 -140 3173 3154 1764 262 111 32 chr11 24057403 24058218 -124725254 + L1MDa LINE L1 1 1112 -5428 291 370 8 0 chr11 24058485 24058612 -124724860 - MER94 DNA DNA -6 128 1 937 159 22 6 chr11 24059228 24059410 -124724062 - L1MA10 LINE L1 -8 6326 6142 988 356 14 43 chr11 24059415 24060042 -124723430 + L1PA16 LINE L1 789 1397 -6177 270 342 30 13 chr11 24060063 24060273 -124723199 + L1PA16 LINE L1 2084 2303 -5271 835 246 14 100 chr11 24060491 24060840 -124722632 + L1PA16 LINE L1 2171 2489 -5092 * 4679 181 41 27 chr11 24060836 24062276 -124721196 + L1PA16 LINE L1 6147 7604 0 660 180 0 0 chr11 24062281 24062403 -124721069 - L1MB1 LINE L1 -44 6145 6024 2478 184 15 29 chr11 24062407 24062715 -124720757 + L1MB1 LINE L1 5343 5643 -525 2122 124 53 28 chr11 24062715 24063070 -124720402 - THE1B LTR MaLR 0 364 1 2478 184 15 29 chr11 24063070 24063283 -124720189 + L1MB1 LINE L1 5643 5857 -311 238 300 12 62 chr11 24064442 24064522 -124718950 - L2 LINE L2 -8 3264 3189 1940 136 3 32 chr11 24064664 24064974 -124718498 + AluSx SINE Alu 1 301 -11 2149 159 78 8 chr11 24065546 24065942 -124717530 - MSTA LTR MaLR -4 424 1 282 372 49 26 chr11 24066135 24066361 -124717111 + MIR SINE MIR 28 258 -4 1408 274 25 43 chr11 24068273 24068827 -124714645 + L1MC4 LINE L1 6467 7010 -1032 1310 216 53 58 chr11 24068828 24069379 -124714093 + L1MC4 LINE L1 7180 7715 -93 302 270 82 31 chr11 24069537 24069733 -124713739 + L1M4 LINE L1 3115 3320 -2826 378 318 88 9 chr11 24069906 24070327 -124713145 + L1M4 LINE L1 3502 3955 -2191 2177 115 0 13 chr11 24070355 24070667 -124712805 - AluSx SINE Alu -4 308 1 300 289 78 64 chr11 24070720 24070883 -124712589 + L1M4 LINE L1 4030 4198 -1948 2296 58 45 0 chr11 24070883 24071174 -124712298 - AluY SINE Alu -7 304 1 300 289 78 64 chr11 24071174 24071228 -124712244 + L1M4 LINE L1 4198 4250 -1896 212 226 48 107 chr11 24071570 24071654 -124711818 + MIR SINE MIR 122 200 -62 4025 107 97 106 chr11 24072710 24074089 -124709383 + pTR5 LTR ERV1 743 2438 0 181 132 0 53 chr11 24074092 24074130 -124709342 + MIR SINE MIR 120 155 -107 306 204 0 146 chr11 24074770 24074873 -124708599 + MER21B LTR ERV1 1 88 -775 1606 269 113 56 chr11 24074897 24075642 -124707830 + MER21B LTR ERV1 17 803 -60 602 329 129 45 chr11 24075934 24076439 -124707033 + L2 LINE L2 2348 2894 -420 231 167 0 0 chr11 24076787 24076829 -124706643 + (TA)n Simple_repeat Simple_repeat 1 42 0 202 178 68 0 chr11 24076861 24076934 -124706538 + (TA)n Simple_repeat Simple_repeat 1 78 0 286 322 87 48 chr11 24077125 24077333 -124706139 + MIR SINE MIR 5 220 -42 742 282 8 43 chr11 24078184 24078418 -124705054 + MER110-int LTR ERV1 3687 3912 -735 351 0 0 0 chr11 24078422 24078461 -124705011 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7265 56 0 1 chr11 24078462 24080154 -124703318 + L1PA5 LINE L1 4469 6154 0 829 273 36 25 chr11 24080220 24080554 -124702918 + MER110A LTR ERV1 176 491 0 25 31 0 0 chr11 24081514 24081546 -124701926 + AT_rich Low_complexity Low_complexity 1 32 0 4983 203 64 3 chr11 24083540 24084603 -124698869 - L1MA1 LINE L1 0 7721 6584 1433 125 19 0 chr11 24084605 24084813 -124698659 - AluSg/x SINE Alu -8 304 93 560 132 0 0 chr11 24084813 24084889 -124698583 + AluS SINE Alu 17 92 -221 8743 195 28 7 chr11 24084889 24086246 -124697226 - L1MA1 LINE L1 -976 6589 5178 2016 136 74 8 chr11 24086246 24086598 -124696874 - THE1C LTR MaLR 0 375 1 8743 195 28 7 chr11 24086598 24087187 -124696285 - L1MA1 LINE L1 -2387 5178 4603 1555 189 112 50 chr11 24087194 24087371 -124696101 + MSTA LTR MaLR 1 166 -262 2416 73 0 3 chr11 24087371 24087673 -124695799 + AluY SINE Alu 1 301 -10 1555 189 112 50 chr11 24087673 24087898 -124695574 + MSTA LTR MaLR 166 428 0 7257 157 107 41 chr11 24087900 24089380 -124694092 + MSTA-int LTR MaLR 3 1580 0 1777 168 127 21 chr11 24089380 24089767 -124693705 + MSTA LTR MaLR 1 428 0 445 196 0 0 chr11 24089767 24089874 -124693598 - L1MA1 LINE L1 -2975 4590 4484 745 262 111 21 chr11 24089998 24090277 -124693195 + MSTA LTR MaLR 125 428 0 3121 220 37 31 chr11 24090278 24091520 -124691952 - L1MA1 LINE L1 -2975 4590 3347 6801 71 0 0 chr11 24091525 24093197 -124690275 - L1PA6 LINE L1 -4 6150 4473 3781 67 2 2 chr11 24093200 24093709 -124689763 + L1P LINE L1 3164 3672 -2474 1596 118 7 28 chr11 24093707 24093994 -124689478 + L1M1 LINE L1 2494 2774 -4791 * 2931 228 52 51 chr11 24093985 24094766 -124688706 - L1MA1 LINE L1 -6767 798 17 242 239 43 43 chr11 24095236 24095353 -124688119 - L1MC4 LINE L1 -1312 6730 6614 351 174 8 41 chr11 24095375 24095496 -124687976 + (TA)n Simple_repeat Simple_repeat 1 117 0 201 111 0 0 chr11 24095507 24095534 -124687938 + (TG)n Simple_repeat Simple_repeat 1 27 0 261 132 57 0 chr11 24095534 24095587 -124687885 - LTR66 LTR ERVL -172 438 383 1007 128 67 17 chr11 24095630 24095750 -124687722 + L1PB1 LINE L1 5833 5966 -185 1832 108 0 4 chr11 24095750 24095999 -124687473 + AluSg SINE Alu 7 254 -56 1007 128 67 17 chr11 24095999 24096057 -124687415 + L1PB1 LINE L1 5966 6020 -131 180 0 0 0 chr11 24096059 24096079 -124687393 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 348 154 22 11 chr11 24096375 24096466 -124687006 + (TA)n Simple_repeat Simple_repeat 1 92 0 1671 91 4 0 chr11 24096466 24096696 -124686776 - L1P5 LINE L1 -360 5791 5561 2302 11 0 8 chr11 24097194 24097457 -124686015 + AluY SINE Alu 39 299 -12 661 263 60 29 chr11 24097809 24098125 -124685347 + L1 LINE L1 2372 2697 -3449 327 266 46 0 chr11 24098255 24098364 -124685108 + L1 LINE L1 4357 4470 -1676 269 241 55 60 chr11 24098595 24098785 -124684687 + L1P LINE L1 4787 4978 -1168 2085 120 7 3 chr11 24099574 24099882 -124683590 - AluSx SINE Alu -3 309 1 22 0 0 0 chr11 24100536 24100558 -124682914 + AT_rich Low_complexity Low_complexity 1 22 0 10437 229 66 19 chr11 24100682 24103877 -124679595 + L1MA7 LINE L1 2117 5160 -1131 1207 225 110 22 chr11 24103877 24104241 -124679231 + MSTD LTR MaLR 1 396 0 10437 229 66 19 chr11 24104241 24104536 -124678936 + L1MA7 LINE L1 5160 5440 -851 1094 204 9 0 chr11 24104536 24104766 -124678706 - MER46A DNA MER2_type 0 236 5 10437 229 66 19 chr11 24104766 24105265 -124678207 + L1MA7 LINE L1 5440 6291 0 283 374 74 0 chr11 24105596 24105786 -124677686 + MIR SINE MIR 45 248 -14 344 198 0 12 chr11 24106995 24107081 -124676391 + GA-rich Low_complexity Low_complexity 3 87 0 1952 72 4 4 chr11 24107096 24107380 -124676092 - AluY SINE Alu 0 317 34 205 298 24 0 chr11 24107697 24107781 -124675691 + (TA)n Simple_repeat Simple_repeat 1 86 0 228 295 0 21 chr11 24107790 24107885 -124675587 + GA-rich Low_complexity Low_complexity 3 95 0 251 277 185 31 chr11 24107894 24108024 -124675448 - MIR3 SINE MIR -28 180 31 25 0 0 0 chr11 24108694 24108719 -124674753 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 24108947 24108969 -124674503 + AT_rich Low_complexity Low_complexity 1 22 0 5996 95 33 8 chr11 24109027 24109910 -124673562 - L1PA10 LINE L1 -4 6164 5260 5065 158 6 81 chr11 24109909 24111064 -124672408 + L1P LINE L1 2585 3653 -2493 * 4644 146 32 9 chr11 24111073 24111889 -124671583 + L1P LINE L1 4365 5199 -947 26 30 0 0 chr11 24112081 24112114 -124671358 + AT_rich Low_complexity Low_complexity 1 33 0 1403 214 13 22 chr11 24112131 24112444 -124671028 - AluJo SINE Alu -2 310 1 362 352 141 0 chr11 24113065 24113278 -124670194 - MIR SINE MIR -14 248 6 227 204 0 0 chr11 24113918 24113967 -124669505 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 191 235 15 73 chr11 24114022 24114090 -124669382 - L2 LINE L2 -2 3311 3248 1668 184 0 0 chr11 24114506 24114783 -124668689 + AluJo SINE Alu 10 286 -26 380 246 45 0 chr11 24114851 24114961 -124668511 - MER103 DNA DNA -49 117 3 23 0 0 0 chr11 24115115 24115138 -124668334 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr11 24115557 24115593 -124667879 + AT_rich Low_complexity Low_complexity 1 36 0 2232 110 0 0 chr11 24116422 24116732 -124666740 - AluSg SINE Alu 0 310 1 539 142 62 9 chr11 24116831 24116944 -124666528 - L1MA4 LINE L1 -6 6294 6176 377 262 138 37 chr11 24116965 24117669 -124665803 - L1ME3 LINE L1 -213 5951 5139 1378 256 42 26 chr11 24117674 24118127 -124665345 - MER65C LTR ERV1 -1 460 1 322 270 45 0 chr11 24118662 24118751 -124664721 + L1MC4 LINE L1 6613 6705 -1337 207 179 45 0 chr11 24118752 24118819 -124664653 + (TA)n Simple_repeat Simple_repeat 1 70 0 250 226 20 88 chr11 24118917 24119019 -124664453 + MER5B DNA MER1_type 83 177 -1 2173 309 40 14 chr11 24119039 24119732 -124663740 + L1M4b LINE L1 18 728 -6131 1809 233 14 21 chr11 24119750 24120184 -124663288 + L1M4b LINE L1 942 1372 -5487 24 67 0 0 chr11 24120468 24120513 -124662959 + AT_rich Low_complexity Low_complexity 1 45 0 225 343 15 0 chr11 24120811 24120878 -124662594 - L2 LINE L2 -2 3311 3244 414 323 48 12 chr11 24120952 24121119 -124662353 - MIR SINE MIR -82 180 8 2098 107 41 0 chr11 24121987 24122278 -124661194 - AluSx SINE Alu -9 303 1 53 73 0 0 chr11 24122572 24122681 -124660791 + AT_rich Low_complexity Low_complexity 1 109 0 290 306 118 21 chr11 24122786 24122972 -124660500 + MIR SINE MIR 49 252 -10 22 80 0 0 chr11 24123031 24123081 -124660391 + AT_rich Low_complexity Low_complexity 1 50 0 515 302 145 44 chr11 24123468 24124285 -124659187 - L2 LINE L2 -2 3311 2418 1098 257 10 0 chr11 24125063 24125355 -124658117 + L1 LINE L1 2755 3049 -3097 6042 253 75 32 chr11 24125463 24126097 -124657375 + L1M4b LINE L1 1595 2200 -4757 1729 113 17 66 chr11 24126097 24126398 -124657074 + AluSq SINE Alu 28 313 0 6042 253 75 32 chr11 24126398 24126855 -124656617 + L1M4b LINE L1 2200 2636 -4321 287 19 37 37 chr11 24126855 24126909 -124656563 + (TA)n Simple_repeat Simple_repeat 1 54 0 6042 253 75 32 chr11 24126909 24129810 -124653662 + L1M4b LINE L1 2636 5759 -1198 426 252 9 0 chr11 24129838 24129949 -124653523 + L1M4b LINE L1 5943 6054 -903 601 323 11 48 chr11 24131128 24131397 -124652075 + MIR SINE MIR 3 261 -1 198 71 0 0 chr11 24131598 24131626 -124651846 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 256 113 113 0 chr11 24131626 24131679 -124651793 - L1MC2 LINE L1 -14 6330 6272 786 209 53 5 chr11 24131682 24131869 -124651603 - L1MCa LINE L1 -6224 202 7 352 278 0 0 chr11 24132125 24132222 -124651250 - MER117 DNA MER1_type -99 98 2 423 225 26 10 chr11 24132333 24132462 -124651010 - MLT1J1 LTR MaLR 0 489 349 25 31 0 0 chr11 24133038 24133070 -124650402 + AT_rich Low_complexity Low_complexity 1 32 0 241 240 210 20 chr11 24133768 24133868 -124649604 + MIR SINE MIR 23 141 -121 201 321 12 37 chr11 24133978 24133991 -124649481 - L2 LINE L2 -1 3312 3300 1199 166 78 108 chr11 24133991 24134455 -124649017 - LTR7 LTR ERV1 0 450 1 201 321 12 37 chr11 24134455 24134522 -124648950 - L2 LINE L2 -13 3300 3234 1810 143 7 7 chr11 24134546 24134846 -124648626 + AluJb SINE Alu 13 312 0 260 265 72 72 chr11 24134947 24135030 -124648442 - MIR SINE MIR -173 89 7 1163 238 24 62 chr11 24135285 24135625 -124647847 - MLT1E2 LTR MaLR -4 622 296 383 240 10 10 chr11 24135840 24135940 -124647532 + L1PA15-16 LINE L1 1474 1573 -5276 * 854 211 46 48 chr11 24135928 24136204 -124647268 + L1PB4 LINE L1 1347 1622 -5227 1677 176 0 35 chr11 24136204 24136522 -124646950 + AluJb SINE Alu 1 307 -5 854 211 46 48 chr11 24136522 24136743 -124646729 + L1PB4 LINE L1 1622 1932 -4917 10225 187 27 91 chr11 24136757 24138478 -124644994 + L1PB4 LINE L1 3001 4831 -2028 2007 177 3 20 chr11 24138478 24138822 -124644650 - MER1B DNA MER1_type 0 339 2 10225 187 27 91 chr11 24138822 24140898 -124642574 + L1PB4 LINE L1 4831 6859 0 1384 170 117 11 chr11 24141011 24141293 -124642179 + AluJb SINE Alu 1 312 0 703 264 7 0 chr11 24141357 24141505 -124641967 - MLT1F1 LTR MaLR -90 477 329 32 67 0 0 chr11 24142154 24142214 -124641258 + AT_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr11 24143227 24143262 -124640210 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 24143289 24143326 -124640146 + AT_rich Low_complexity Low_complexity 1 37 0 180 180 0 54 chr11 24143441 24143552 -124639920 + (TATAG)n Simple_repeat Simple_repeat 1 105 0 277 326 0 54 chr11 24143679 24143808 -124639664 + L1MB1 LINE L1 1945 2066 -5420 1063 263 64 10 chr11 24143834 24144634 -124638838 + L1MB1 LINE L1 3021 3870 -3695 598 147 0 0 chr11 24144660 24144755 -124638717 + L1MB1 LINE L1 5486 5580 -1985 2831 192 27 2 chr11 24144776 24145369 -124638103 + L1MB1 LINE L1 6980 7587 0 281 271 12 0 chr11 24145669 24145754 -124637718 + (TA)n Simple_repeat Simple_repeat 2 87 0 744 240 86 57 chr11 24145920 24145958 -124637514 + MLT1B LTR MaLR 1 36 -354 2024 125 10 0 chr11 24145958 24146253 -124637219 - AluSq SINE Alu -13 300 3 744 240 86 57 chr11 24146253 24146493 -124636979 + MLT1B LTR MaLR 36 287 -103 409 271 0 19 chr11 24146976 24147083 -124636389 - MLT1K LTR MaLR -2 586 482 24 32 0 0 chr11 24147733 24147764 -124635708 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 24147828 24147863 -124635609 + AT_rich Low_complexity Low_complexity 1 35 0 1830 237 78 9 chr11 24149068 24149515 -124633957 - ERVL-B1 LTR ERVL -5285 479 2 1029 231 218 49 chr11 24149516 24149961 -124633511 - MLT2B1 LTR ERVL 0 520 1 2533 47 30 0 chr11 24150702 24151003 -124632469 - AluY SINE Alu -1 310 1 185 0 0 39 chr11 24153841 24153867 -124629605 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2489 73 0 0 chr11 24153867 24154184 -124629288 - L1PA7 LINE L1 -16 6138 5822 2682 43 0 46 chr11 24154184 24154499 -124628973 + L1P3 LINE L1 5475 5774 -380 2268 107 3 0 chr11 24154499 24154809 -124628663 + AluY SINE Alu 1 311 0 2682 43 0 46 chr11 24154809 24154844 -124628628 + L1P3 LINE L1 5774 5809 -345 2443 91 0 0 chr11 24155943 24156252 -124627220 - AluY SINE Alu -2 309 1 251 159 58 0 chr11 24156283 24156352 -124627120 + (TA)n Simple_repeat Simple_repeat 2 74 0 1364 215 56 97 chr11 24156448 24157150 -124626322 - MER61E LTR ERV1 0 779 2 828 253 96 81 chr11 24158351 24159119 -124624353 + L1M4 LINE L1 719 1498 -5044 2573 258 49 42 chr11 24159122 24159875 -124623597 + L1M4 LINE L1 2389 3098 -3546 2248 116 3 0 chr11 24159875 24160178 -124623294 + AluSq SINE Alu 3 306 -7 2573 258 49 42 chr11 24160178 24160785 -124622687 + L1M4 LINE L1 3098 3699 -2945 226 295 39 0 chr11 24161096 24161174 -124622298 - MLT1J LTR MaLR -9 502 422 461 284 154 12 chr11 24161188 24161350 -124622122 - MER63A DNA MER1_type -25 185 1 524 232 28 109 chr11 24162067 24162205 -124621267 + MLT1D LTR MaLR 1 118 -387 2028 130 75 20 chr11 24162205 24162550 -124620922 + THE1B LTR MaLR 1 364 0 524 232 28 109 chr11 24162550 24162622 -124620850 + MLT1D LTR MaLR 118 194 -311 538 264 62 65 chr11 24162637 24162944 -124620528 + MER21B LTR ERV1 408 713 -150 250 228 8 39 chr11 24163359 24163486 -124619986 + T-rich Low_complexity Low_complexity 3 125 0 247 223 0 32 chr11 24164780 24164874 -124618598 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 546 230 31 50 chr11 24164984 24165145 -124618327 + MER90 LTR ERV1 3 160 -415 2249 106 3 0 chr11 24165270 24165571 -124617901 - AluSp SINE Alu -11 302 1 222 381 60 8 chr11 24166519 24166653 -124616819 + MIR SINE MIR 17 157 -105 237 310 55 55 chr11 24166765 24166910 -124616562 - L2 LINE L2 -341 2973 2829 807 282 174 29 chr11 24166992 24167741 -124615731 + Charlie2 DNA MER1_type 1927 2783 -79 1689 124 124 0 chr11 24167804 24168071 -124615401 + AluSx SINE Alu 1 300 -2 3339 179 75 8 chr11 24168071 24168787 -124614685 - LTR1B LTR ERV1 -6 779 1 44 63 0 0 chr11 24169071 24169150 -124614322 + AT_rich Low_complexity Low_complexity 1 79 0 225 330 93 0 chr11 24169631 24169728 -124613744 - L2 LINE L2 -56 3216 3111 425 243 68 57 chr11 24170208 24170385 -124613087 + L1MEc LINE L1 14 192 -6204 23 0 0 0 chr11 24170434 24170457 -124613015 + AT_rich Low_complexity Low_complexity 1 23 0 368 257 81 14 chr11 24170458 24170606 -124612866 + L1MEc LINE L1 1875 2032 -4364 277 294 77 21 chr11 24170699 24170842 -124612630 + L1MEc LINE L1 2051 2201 -4195 422 245 182 19 chr11 24170889 24171207 -124612265 + L1MEc LINE L1 3222 3591 -2624 257 241 84 36 chr11 24171600 24171683 -124611789 - LTR33 LTR ERVL -136 385 299 437 229 109 70 chr11 24172024 24172225 -124611247 - MIR SINE MIR -24 238 30 387 338 15 8 chr11 24172921 24173054 -124610418 - MIR SINE MIR -105 157 24 209 239 22 0 chr11 24173072 24173118 -124610354 - MIR SINE MIR -171 91 45 488 315 123 0 chr11 24173215 24173377 -124610095 - MIR SINE MIR -13 249 68 224 173 80 0 chr11 24173475 24173550 -124609922 + (TTAAA)n Simple_repeat Simple_repeat 3 83 0 1440 254 77 60 chr11 24173602 24174137 -124609335 + MER90 LTR ERV1 70 613 -1 289 317 24 32 chr11 24175299 24175422 -124608050 - MLT1K LTR MaLR -368 220 99 195 100 0 0 chr11 24175562 24175592 -124607880 + (TA)n Simple_repeat Simple_repeat 2 31 0 483 28 14 42 chr11 24175650 24175722 -124607750 - L1PA8 LINE L1 -6 6166 6097 31 0 0 0 chr11 24175755 24175786 -124607686 + AT_rich Low_complexity Low_complexity 1 31 0 387 293 43 30 chr11 24176691 24176855 -124606617 + MIR SINE MIR 49 214 -48 193 222 89 56 chr11 24176907 24176997 -124606475 + L2 LINE L2 3021 3113 -200 362 214 38 61 chr11 24177078 24177209 -124606263 - MER97a DNA MER1_type? -303 591 464 312 308 60 26 chr11 24177581 24177698 -124605774 + MIR3 SINE MIR 5 125 -83 2008 136 7 0 chr11 24178146 24178440 -124605032 + AluSx SINE Alu 1 296 -16 189 360 72 16 chr11 24178830 24178955 -124604517 + MIR SINE MIR 26 157 -105 356 141 0 28 chr11 24179510 24179581 -124603891 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 261 209 0 0 chr11 24180545 24180612 -124602860 + CT-rich Low_complexity Low_complexity 2 68 0 438 274 128 29 chr11 24180734 24181507 -124601965 - L1MCc LINE L1 -4820 2147 1159 2010 166 145 30 chr11 24182790 24183295 -124600177 - LTR49 LTR ERV1 -32 563 1 246 172 69 58 chr11 24183485 24183572 -124599900 + L1M4 LINE L1 4121 4208 -1938 1476 164 26 11 chr11 24183643 24183911 -124599561 - MER4D LTR ERV1 0 903 632 1222 197 15 42 chr11 24183911 24184077 -124599395 - LTR8 LTR ERV1 0 691 533 1914 180 80 10 chr11 24184077 24184477 -124598995 - MSTA LTR MaLR 0 428 1 1222 197 15 42 chr11 24184477 24184569 -124598903 - LTR8 LTR ERV1 -158 533 440 1904 127 16 37 chr11 24184584 24184906 -124598566 - LTR8 LTR ERV1 -376 315 1 * 3367 166 52 5 chr11 24184906 24185515 -124597957 - MER4D LTR ERV1 -265 638 1 29678 118 15 62 chr11 24185917 24192382 -124591090 - L1PA7 LINE L1 0 6154 12 2047 120 9 25 chr11 24192401 24192718 -124590754 - AluSx SINE Alu 0 312 1 22 35 0 0 chr11 24193492 24193521 -124589951 + AT_rich Low_complexity Low_complexity 1 29 0 1701 189 0 7 chr11 24193959 24194266 -124589206 - AluJo SINE Alu -7 305 1 240 335 95 22 chr11 24194288 24194467 -124589005 + L3 LINE CR1 1386 1577 0 2411 97 0 0 chr11 24198549 24198858 -124584614 - AluSc SINE Alu 0 309 1 275 332 118 35 chr11 24199693 24199922 -124583550 + MIR SINE MIR 15 262 0 214 288 0 0 chr11 24200293 24200352 -124583120 + T-rich Low_complexity Low_complexity 1 59 0 832 167 13 0 chr11 24200386 24200536 -124582936 + MER67D LTR ERV1 1 152 -362 250 313 12 0 chr11 24200574 24200654 -124582818 - AluSc SINE Alu -21 278 198 24 32 0 0 chr11 24201092 24201123 -124582349 + AT_rich Low_complexity Low_complexity 1 31 0 326 299 34 26 chr11 24201359 24201476 -124581996 - MIR SINE MIR -44 218 101 229 247 0 65 chr11 24201538 24201615 -124581857 + CT-rich Low_complexity Low_complexity 5 76 0 31 44 0 0 chr11 24201917 24201962 -124581510 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr11 24202360 24202399 -124581073 + AT_rich Low_complexity Low_complexity 1 39 0 2017 122 0 56 chr11 24202852 24203171 -124580301 - AluSx SINE Alu -11 301 1 235 360 26 33 chr11 24203348 24203501 -124579971 - MIR SINE MIR -34 228 77 322 358 69 51 chr11 24203503 24203894 -124579578 - MLT1J LTR MaLR -2 509 112 390 21 0 0 chr11 24204046 24204093 -124579379 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 0 0 0 chr11 24204469 24204489 -124578983 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2059 108 0 0 chr11 24204489 24204766 -124578706 - AluSg SINE Alu -33 277 1 21 89 0 0 chr11 24204892 24204948 -124578524 + AT_rich Low_complexity Low_complexity 1 56 0 206 313 45 0 chr11 24205184 24205251 -124578221 + L2 LINE L2 3244 3313 0 230 267 0 0 chr11 24206069 24206129 -124577343 - L1ME1 LINE L1 -67 6099 6040 456 330 94 0 chr11 24206656 24206868 -124576604 + MIR SINE MIR 2 233 -29 351 0 0 0 chr11 24207179 24207218 -124576254 + (TG)n Simple_repeat Simple_repeat 2 40 0 757 236 113 8 chr11 24207584 24207975 -124575497 + L1MC/D LINE L1 5100 5526 -743 738 317 49 13 chr11 24207979 24208370 -124575102 - L1MDa LINE L1 -3394 3146 2742 1743 159 3 14 chr11 24208370 24208701 -124574771 - AluSx SINE Alu 0 328 1 4494 197 70 20 chr11 24208815 24209836 -124573636 - L1MC1 LINE L1 -6 6327 5256 1490 207 13 13 chr11 24209856 24210156 -124573316 - AluJb SINE Alu -8 304 5 353 156 0 0 chr11 24210158 24210222 -124573250 + L1MA5A LINE L1 6228 6291 -6 868 158 39 47 chr11 24210285 24210519 -124572953 - L1MA5A LINE L1 -36 6261 6030 606 272 10 36 chr11 24210515 24210710 -124572762 - L1MC1 LINE L1 -922 5224 5035 * 1015 268 17 22 chr11 24210714 24211091 -124572381 - L1MDa LINE L1 -3932 2608 2235 787 225 109 14 chr11 24211284 24211560 -124571912 - L1MDa LINE L1 -4402 2138 1837 350 250 10 0 chr11 24211560 24211664 -124571808 + (TA)n Simple_repeat Simple_repeat 2 106 0 1453 243 93 47 chr11 24211664 24211693 -124571779 + L1ME2 LINE L1 5291 5317 -847 2529 165 26 4 chr11 24211693 24212185 -124571287 + L1MA4 LINE L1 5793 6295 -5 1453 243 93 47 chr11 24212185 24212792 -124570680 + L1ME2 LINE L1 5317 5956 -208 240 228 0 0 chr11 24212873 24212930 -124570542 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 230 260 0 42 chr11 24212986 24213082 -124570390 - L1MC4 LINE L1 -1338 6704 6613 263 238 0 12 chr11 24213082 24213166 -124570306 + (TA)n Simple_repeat Simple_repeat 2 84 0 256 165 71 24 chr11 24213168 24213253 -124570219 - L1MC4 LINE L1 -1339 6703 6615 228 213 25 38 chr11 24213238 24213318 -124570154 + L1MC3 LINE L1 6569 6647 -1138 * 196 270 10 80 chr11 24214414 24214514 -124568958 + MIR SINE MIR 124 216 -46 258 265 72 0 chr11 24214524 24214607 -124568865 + MIR3 SINE MIR 119 207 -1 21 0 0 0 chr11 24214836 24214857 -124568615 + AT_rich Low_complexity Low_complexity 1 21 0 2041 138 22 40 chr11 24215107 24215478 -124567994 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr11 24215485 24215506 -124567966 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 24215586 24215616 -124567856 + AT_rich Low_complexity Low_complexity 1 30 0 1237 191 4 8 chr11 24216539 24216775 -124566697 + MER46A DNA MER2_type 2 236 0 202 197 70 0 chr11 24216894 24216965 -124566507 + T-rich Low_complexity Low_complexity 4 79 0 3870 77 8 0 chr11 24216965 24217475 -124565997 - L1PA7 LINE L1 -11 6143 5630 231 333 27 0 chr11 24217782 24217857 -124565615 + MIR SINE MIR 80 156 -106 2181 101 10 0 chr11 24218089 24218395 -124565077 - AluY SINE Alu -2 309 1 296 307 186 26 chr11 24220775 24221156 -124562316 - L3 LINE CR1 -40 1537 1096 285 296 87 9 chr11 24221552 24221667 -124561805 + MIR SINE MIR 132 255 -7 2254 110 0 3 chr11 24221891 24222199 -124561273 - AluSc SINE Alu -2 307 1 270 0 0 0 chr11 24222202 24222232 -124561240 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5591 123 15 2 chr11 24222232 24223369 -124560103 - L1PA14 LINE L1 -9 6152 5002 512 139 0 0 chr11 24223369 24223448 -124560024 - AluJ/FRAM SINE Alu -16 296 218 1841 173 10 0 chr11 24223488 24223789 -124559683 - AluJb SINE Alu -6 306 3 4313 179 73 3 chr11 24223789 24224391 -124559081 - L1PA14 LINE L1 -1127 5019 4334 194 0 0 37 chr11 24224391 24224418 -124559054 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4313 179 73 3 chr11 24224418 24224703 -124558769 - L1PA14 LINE L1 -1812 4334 4070 377 345 108 48 chr11 24224971 24225565 -124557907 + L2 LINE L2 2684 3313 0 261 0 0 0 chr11 24226889 24226918 -124556554 + (CA)n Simple_repeat Simple_repeat 1 29 0 214 345 0 0 chr11 24227758 24227816 -124555656 - MIR SINE MIR -69 139 82 1283 115 0 0 chr11 24227984 24228166 -124555306 - AluSp SINE Alu -2 311 130 2700 65 3 0 chr11 24228169 24228520 -124554952 - L1PA5 LINE L1 -5 6149 5798 3990 216 12 4 chr11 24228620 24229532 -124553940 + L1PB1 LINE L1 3167 4085 -2061 5395 178 29 5 chr11 24229543 24231366 -124552106 + L1PB1 LINE L1 4295 6150 -1 244 265 98 20 chr11 24231383 24231485 -124551987 + L1MC4a LINE L1 5870 5979 -1829 220 68 23 23 chr11 24231506 24231550 -124551922 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr11 24232162 24232187 -124551285 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr11 24232541 24232562 -124550910 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 198 0 0 0 chr11 24232884 24232906 -124550566 + (TC)n Simple_repeat Simple_repeat 1 22 0 2301 108 0 0 chr11 24233002 24233308 -124550164 + AluSx SINE Alu 1 306 -6 1962 137 16 10 chr11 24333309 24333615 -124449857 + LTR9 LTR ERV1 305 612 0 3378 116 50 0 chr11 24334002 24334526 -124448946 + MER41A LTR ERV1 5 554 0 273 175 0 0 chr11 24334630 24334693 -124448779 + L1PB3 LINE L1 6092 6154 0 986 193 57 112 chr11 24334921 24335305 -124448167 - MLT1A1 LTR MaLR -2 363 1 244 151 75 0 chr11 24335380 24335433 -124448039 - MLT2B2 LTR ERVL 0 520 464 272 195 0 46 chr11 24335433 24335520 -124447952 + (TA)n Simple_repeat Simple_repeat 1 83 0 845 208 10 58 chr11 24335521 24335728 -124447744 - MLT2B2 LTR ERVL -40 475 279 335 250 21 71 chr11 24335867 24336007 -124447465 - L1MC4 LINE L1 -1274 6768 6636 1241 256 111 33 chr11 24336012 24336952 -124446520 - L1MC4a LINE L1 -1290 6518 5381 1112 141 36 32 chr11 24337196 24337416 -124446056 - HERVH LTR ERV1 -1896 5817 5597 * 4184 139 23 3 chr11 24337413 24338062 -124445410 - HERVH LTR ERV1 -2564 5149 4488 1477 87 0 5 chr11 24338064 24338271 -124445201 - HERVH LTR ERV1 -3720 3993 3788 26 30 0 0 chr11 24339296 24339329 -124444143 + AT_rich Low_complexity Low_complexity 1 33 0 1259 161 0 0 chr11 24339595 24339800 -124443672 + Tigger5 DNA MER2_type 2119 2323 0 328 312 18 0 chr11 24340945 24341054 -124442418 - L2 LINE L2 -9 3304 3194 247 169 39 91 chr11 24341731 24341808 -124441664 - MIR SINE MIR -97 165 93 648 168 127 35 chr11 24343071 24343268 -124440204 - MER114 LTR ERV -60 588 374 2836 244 84 34 chr11 24343270 24344286 -124439186 - L1MEc LINE L1 -5294 1102 36 427 282 77 57 chr11 24344446 24344655 -124438817 - MLT1C LTR MaLR -123 344 132 846 76 68 0 chr11 24344745 24344863 -124438609 - L1PA11 LINE L1 -17 6157 6032 624 242 108 25 chr11 24344923 24345203 -124438269 - L1M4 LINE L1 -2280 3866 3565 22 0 0 0 chr11 24346096 24346118 -124437354 + AT_rich Low_complexity Low_complexity 1 22 0 893 164 15 8 chr11 24346144 24346337 -124437135 - L1MD2 LINE L1 -126 6038 5841 1450 237 40 3 chr11 24346341 24346695 -124436777 + L1MD2 LINE L1 5985 6351 -8 789 212 28 15 chr11 24346937 24347128 -124436344 - MLT1C LTR MaLR 0 490 288 23 33 0 0 chr11 24347675 24347705 -124435767 + AT_rich Low_complexity Low_complexity 1 30 0 268 306 46 40 chr11 24348501 24348847 -124434625 + L1M4 LINE L1 4455 4802 -1344 221 312 91 0 chr11 24349940 24350017 -124433455 + L2 LINE L2 3227 3310 -3 914 97 30 0 chr11 24350090 24350224 -124433248 - AluSg/x SINE Alu -20 290 153 944 130 7 19 chr11 24350234 24350388 -124433084 + AluSg/x SINE Alu 144 295 -17 24 32 0 0 chr11 24350681 24350712 -124432760 + GC_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr11 24350723 24350755 -124432717 + GC_rich Low_complexity Low_complexity 1 32 0 1582 123 18 18 chr11 24351421 24351697 -124431775 - AluY SINE Alu 0 311 36 601 158 26 2 chr11 24352527 24352653 -124430819 + THE1-int LTR MaLR 1137 1252 -328 384 0 17 35 chr11 24352879 24352937 -124430535 + (TG)n Simple_repeat Simple_repeat 2 58 0 33 66 0 0 chr11 24353212 24353273 -124430199 + AT_rich Low_complexity Low_complexity 1 61 0 202 358 123 25 chr11 24353669 24353873 -124429599 - L2 LINE L2 0 3313 3090 21 89 0 0 chr11 24354003 24354059 -124429413 + AT_rich Low_complexity Low_complexity 1 56 0 388 143 52 26 chr11 24354205 24354282 -124429190 - MSTA LTR MaLR -349 79 1 4662 181 26 25 chr11 24354290 24355578 -124427894 - L1 LINE L1 -3598 3967 2678 293 196 18 0 chr11 24356162 24356218 -124427254 + L1MD3 LINE L1 6890 6946 -1049 1535 238 52 35 chr11 24356221 24356453 -124427019 + L1MD3 LINE L1 7451 7678 -317 1881 141 3 17 chr11 24356453 24356750 -124426722 + AluSx SINE Alu 1 293 -19 1535 238 52 35 chr11 24356750 24357001 -124426471 + L1MD3 LINE L1 7678 7942 -53 389 264 61 12 chr11 24356999 24357162 -124426310 - L1M4 LINE L1 -957 5189 5019 * 1607 178 7 20 chr11 24357864 24358167 -124425305 + THE1C LTR MaLR 77 375 0 230 276 83 41 chr11 24358183 24358328 -124425144 - L1ME LINE L1 -469 5652 5502 2443 97 59 45 chr11 24358331 24358773 -124424699 + LTR7 LTR ERV1 1 448 -2 1217 170 58 0 chr11 24358846 24359069 -124424403 - AluJb SINE Alu -1 311 76 1668 192 15 0 chr11 24359254 24359587 -124423885 + L1 LINE L1 4699 5036 -1110 6960 113 1 16 chr11 24359925 24360953 -124422519 - HERV9 LTR ERV1 -7027 1372 360 1064 121 7 0 chr11 24361053 24361202 -124422270 - MER41C LTR ERV1 -404 150 1 478 170 11 11 chr11 24361202 24361295 -124422177 - MER4A LTR ERV1 -571 93 1 4794 169 11 8 chr11 24361597 24362463 -124421009 + MER4D LTR ERV1 4 872 0 347 172 35 46 chr11 24362566 24362653 -124420819 - LTR7 LTR ERV1 -2 448 363 1971 166 98 15 chr11 24363062 24363459 -124420013 + MER41C LTR ERV1 125 554 0 1849 151 21 25 chr11 24363490 24363931 -124419541 + MER4A LTR ERV1 90 664 0 216 0 0 0 chr11 24364460 24364484 -124418988 + (A)n Simple_repeat Simple_repeat 1 24 0 212 162 0 0 chr11 24364498 24364535 -124418937 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 266 304 27 54 chr11 24364535 24364647 -124418825 + MIR SINE MIR 40 148 -114 777 185 5 49 chr11 24364848 24365032 -124418440 + pTR5 LTR ERV1 743 918 -1520 2016 108 42 11 chr11 24365189 24365476 -124417996 + AluSq SINE Alu 4 299 -14 244 310 112 0 chr11 24366001 24366117 -124417355 + MIR3 SINE MIR 40 168 -40 236 223 45 9 chr11 24366306 24366418 -124417054 + (TA)n Simple_repeat Simple_repeat 2 117 0 886 181 119 84 chr11 24366597 24366715 -124416757 - LTR49 LTR ERV1 -264 331 219 2215 89 0 7 chr11 24366715 24367008 -124416464 - AluY SINE Alu -20 291 1 886 181 119 84 chr11 24367008 24367209 -124416263 - LTR49 LTR ERV1 -376 219 1 215 148 37 0 chr11 24367235 24367289 -124416183 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4010 151 12 58 chr11 24367370 24368124 -124415348 - MER4D LTR ERV1 -14 889 173 2779 154 10 50 chr11 24368124 24368642 -124414830 + LOR1a LTR ERV1 1 497 0 4010 151 12 58 chr11 24368642 24368701 -124414771 - MER4D LTR ERV1 -730 173 113 1201 251 65 15 chr11 24368873 24369276 -124414196 - L1M4 LINE L1 -1110 5036 4614 519 296 47 42 chr11 24369469 24369682 -124413790 + MIR SINE MIR 37 250 -12 1683 181 80 92 chr11 24370567 24371069 -124412403 - LTR8 LTR ERV1 -195 496 1 631 135 0 29 chr11 24372832 24372936 -124410536 - L1MA9 LINE L1 -533 5779 5679 * 1775 225 56 24 chr11 24372911 24373408 -124410064 + L1MA9 LINE L1 5762 6274 -38 337 332 104 25 chr11 24373492 24373733 -124409739 - MIR SINE MIR -1 261 2 24 0 0 0 chr11 24373805 24373829 -124409643 + AT_rich Low_complexity Low_complexity 1 24 0 185 300 50 30 chr11 24373915 24374015 -124409457 - MIR SINE MIR -62 146 45 21 36 0 0 chr11 24375783 24375811 -124407661 + AT_rich Low_complexity Low_complexity 1 28 0 1083 263 86 65 chr11 24376481 24377005 -124406467 - MLT1F LTR MaLR -7 535 1 1163 213 11 4 chr11 24377851 24378128 -124405344 - L1M4 LINE L1 -1746 4400 4122 269 271 0 0 chr11 24378114 24378173 -124405299 + MLT1-int LTR MaLR 426 484 -887 * 280 286 135 19 chr11 24378188 24378447 -124405025 + L1ME2 LINE L1 4557 4845 -1301 31 113 0 0 chr11 24378527 24378677 -124404795 + AT_rich Low_complexity Low_complexity 1 150 0 1179 288 86 8 chr11 24378980 24379620 -124403852 + L1ME2 LINE L1 5153 5841 -323 14466 86 4 8 chr11 24380159 24382138 -124401334 - HERV9 LTR ERV1 -3521 4878 2908 22 35 0 0 chr11 24382954 24382983 -124400489 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr11 24383419 24383468 -124400004 + AT_rich Low_complexity Low_complexity 1 49 0 15737 90 18 22 chr11 24384268 24386645 -124396827 + HERVH LTR ERV1 1 2367 -5346 1652 114 30 89 chr11 24386791 24386893 -124396579 - L1MA8 LINE L1 -4 6287 6180 2184 128 0 0 chr11 24386893 24387189 -124396283 + AluSq SINE Alu 1 296 -17 1652 114 30 89 chr11 24387189 24387455 -124396017 - L1MA8 LINE L1 -111 6180 5941 296 258 0 0 chr11 24387457 24387523 -124395949 - MLT1E2 LTR MaLR -435 191 126 1391 215 3 17 chr11 24387611 24387909 -124395563 - AluJb SINE Alu -18 294 1 183 80 0 0 chr11 24387924 24387949 -124395523 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 188 370 0 33 chr11 24388650 24388742 -124394730 + MIR SINE MIR 8 96 -166 200 167 48 0 chr11 24389242 24389284 -124394188 + CT-rich Low_complexity Low_complexity 5 48 0 291 275 0 0 chr11 24389805 24389885 -124393587 - MER116 DNA Mariner 0 80 1 406 302 31 50 chr11 24390459 24390840 -124392632 + HAL1b LINE L1 194 567 -781 318 305 114 32 chr11 24390910 24391251 -124392221 + HAL1b LINE L1 429 797 -551 1084 208 53 7 chr11 24391444 24391747 -124391725 + MER33 DNA MER1_type 7 323 -1 5300 163 42 5 chr11 24391767 24392732 -124390740 - Tigger1 DNA MER2_type -7 2411 1411 5248 155 43 0 chr11 24392750 24393628 -124389844 - Tigger1 DNA MER2_type -1221 1197 282 1067 93 0 0 chr11 24393628 24393767 -124389705 - AluSp/q SINE Alu -12 301 163 227 289 24 0 chr11 24394305 24394388 -124389084 + L1ME LINE L1 2 86 -5984 21 0 0 0 chr11 24394388 24394409 -124389063 + AT_rich Low_complexity Low_complexity 1 21 0 3624 147 15 7 chr11 24394585 24395203 -124388269 + L1PA15 LINE L1 5537 6159 -6 3877 195 31 10 chr11 24395203 24396306 -124387166 - L1P4 LINE L1 -696 5470 4342 319 179 170 6 chr11 24397195 24397336 -124386136 - LTR37B LTR ERV1 0 459 312 22 0 0 0 chr11 24397336 24397358 -124386114 + AT_rich Low_complexity Low_complexity 1 22 0 1929 151 3 0 chr11 24397435 24397727 -124385745 + AluSg SINE Alu 1 293 -17 432 258 60 48 chr11 24397736 24398004 -124385468 - L1MC4a LINE L1 -591 7217 6947 660 247 105 54 chr11 24398015 24398347 -124385125 + L1MC4a LINE L1 7457 7805 -3 363 362 59 0 chr11 24398576 24398728 -124384744 + MIR SINE MIR 78 238 -24 8153 210 24 14 chr11 24399126 24399500 -124383972 - L1 LINE L1 -1916 5649 5280 1992 166 40 0 chr11 24399500 24399850 -124383622 + THE1B LTR MaLR 1 364 0 8153 210 24 14 chr11 24399850 24401859 -124381613 - L1 LINE L1 -2285 5280 3243 387 238 167 66 chr11 24402217 24402444 -124381028 - LTR16C LTR ERVL -160 331 82 290 238 71 56 chr11 24402518 24402644 -124380828 + MER103 DNA DNA 30 157 -9 235 250 0 18 chr11 24402712 24402768 -124380704 - MIR3 SINE MIR -48 160 106 53 78 0 0 chr11 24402993 24403109 -124380363 + AT_rich Low_complexity Low_complexity 1 116 0 4781 142 5 9 chr11 24403595 24404389 -124379083 + L1PA13 LINE L1 5373 6163 0 311 289 117 49 chr11 24404899 24405196 -124378276 - L2 LINE L2 -354 2960 1975 23 54 0 0 chr11 24405336 24405373 -124378099 + AT_rich Low_complexity Low_complexity 1 37 0 256 361 37 0 chr11 24406540 24406648 -124376824 + L2 LINE L2 2866 2977 -295 383 327 83 19 chr11 24406659 24406864 -124376608 + MIR SINE MIR 1 218 -44 1517 84 4 13 chr11 24407044 24407269 -124376203 - pTR5 LTR ERV1 -2044 394 172 304 265 10 0 chr11 24407272 24407370 -124376102 - LTR30 LTR ERV1 -80 642 544 1535 104 82 145 chr11 24407370 24407736 -124375736 - pTR5 LTR ERV1 -413 2025 1683 2134 96 10 23 chr11 24407988 24408291 -124375181 + AluSp SINE Alu 1 299 -14 375 23 0 0 chr11 24408296 24408340 -124375132 + (CA)n Simple_repeat Simple_repeat 2 45 0 281 373 93 30 chr11 24408841 24409077 -124374395 - MIR SINE MIR -8 254 4 429 357 155 14 chr11 24409446 24409743 -124373729 + L3 LINE CR1 1170 1508 -69 284 336 36 79 chr11 24411763 24412016 -124371456 - L3 LINE CR1 -178 1399 1158 1334 207 57 27 chr11 24412862 24413196 -124370276 + THE1C LTR MaLR 32 375 0 3990 161 42 11 chr11 24413214 24413921 -124369551 + THE1C-int LTR MaLR 852 1580 0 1535 191 52 33 chr11 24413923 24414289 -124369183 + THE1C LTR MaLR 3 375 0 21 0 0 0 chr11 24414460 24414481 -124368991 + AT_rich Low_complexity Low_complexity 1 21 0 255 269 96 30 chr11 24415074 24415241 -124368231 - MIR SINE MIR -15 247 70 190 325 32 49 chr11 24415900 24416023 -124367449 - MIR SINE MIR -140 122 2 231 336 42 49 chr11 24418248 24418391 -124365081 - MIR SINE MIR -54 208 67 251 175 18 0 chr11 24419794 24419851 -124363621 + GA-rich Low_complexity Low_complexity 1 58 0 356 307 72 15 chr11 24420363 24420672 -124362800 - L1MEc LINE L1 -4933 1671 1162 203 265 0 0 chr11 24420872 24420921 -124362551 + CT-rich Low_complexity Low_complexity 4 52 0 947 220 164 38 chr11 24420975 24421371 -124362101 - L1MC4 LINE L1 -137 7905 7460 255 292 34 11 chr11 24421421 24421510 -124361962 - LTR16B LTR ERVL -184 280 190 710 170 71 55 chr11 24421520 24421702 -124361770 - MER20 DNA MER1_type -34 185 1 22 56 0 0 chr11 24421915 24421951 -124361521 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr11 24422268 24422310 -124361162 + AT_rich Low_complexity Low_complexity 1 42 0 28 48 0 0 chr11 24422416 24422458 -124361014 + AT_rich Low_complexity Low_complexity 1 42 0 2197 173 34 2 chr11 24423584 24424023 -124359449 - L1MA3 LINE L1 -10 6295 5843 2884 216 27 71 chr11 24424024 24424168 -124359304 - L1M4 LINE L1 -1835 5730 5581 273 29 0 0 chr11 24424168 24424202 -124359270 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 459 0 0 0 chr11 24424210 24424261 -124359211 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2884 216 27 71 chr11 24424261 24425394 -124358078 - L1M4 LINE L1 -1991 5574 4597 1033 91 34 11 chr11 24425396 24425572 -124357900 - AluY SINE Alu -2 309 130 5306 213 33 56 chr11 24425755 24427719 -124355753 - L1M4 LINE L1 -4931 2634 16 1682 235 52 20 chr11 24427778 24428217 -124355255 + LOR1b LTR ERV1 1 453 -8 182 338 91 78 chr11 24428281 24428575 -124354897 + L2 LINE L2 2945 3245 -27 216 0 0 0 chr11 24428575 24428599 -124354873 + (CA)n Simple_repeat Simple_repeat 2 25 0 182 338 91 78 chr11 24428599 24428624 -124354848 + L2 LINE L2 3245 3268 -4 2195 194 31 0 chr11 24428919 24429332 -124354140 - MSTA LTR MaLR -2 426 1 863 251 100 33 chr11 24429864 24429960 -124353512 - Charlie4a DNA MER1_type -1472 489 401 528 154 39 58 chr11 24429960 24430064 -124353408 + U6 snRNA snRNA 2 103 -4 2346 90 0 0 chr11 24430073 24430374 -124353098 - AluY SINE Alu -10 301 1 863 251 100 33 chr11 24430374 24430725 -124352747 - Charlie4a DNA MER1_type -1567 394 1 1293 235 3 17 chr11 24432233 24432421 -124351051 - AluSx SINE Alu -12 300 116 333 0 0 0 chr11 24432421 24432458 -124351014 + (TG)n Simple_repeat Simple_repeat 2 38 0 1293 235 3 17 chr11 24432458 24432571 -124350901 - AluSx SINE Alu -196 116 3 232 258 0 15 chr11 24432940 24433006 -124350466 + T-rich Low_complexity Low_complexity 5 69 0 296 365 37 0 chr11 24433084 24433273 -124350199 - L1ME LINE L1 -390 5731 5536 21 36 0 0 chr11 24433943 24433971 -124349501 + AT_rich Low_complexity Low_complexity 1 28 0 365 229 42 17 chr11 24434130 24434248 -124349224 + L1 LINE L1 4126 4246 -1900 417 149 11 69 chr11 24434261 24434348 -124349124 - MER30 DNA MER1_type -31 199 118 4301 179 59 6 chr11 24434451 24435870 -124347602 + L1PA16 LINE L1 4609 6106 -60 23 78 0 0 chr11 24435907 24435958 -124347514 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr11 24436595 24436617 -124346855 + AT_rich Low_complexity Low_complexity 1 22 0 201 338 29 0 chr11 24436865 24436933 -124346539 + MIR SINE MIR 47 116 -146 245 325 94 8 chr11 24438223 24438340 -124345132 + MIR SINE MIR 2 128 -134 1412 184 8 106 chr11 24438359 24438745 -124344727 - MLT1A1 LTR MaLR -17 348 1 225 269 0 0 chr11 24441118 24441170 -124342302 + T-rich Low_complexity Low_complexity 5 56 0 24 0 0 0 chr11 24442276 24442300 -124341172 + AT_rich Low_complexity Low_complexity 1 24 0 190 309 44 15 chr11 24442655 24442723 -124340749 + L2 LINE L2 2893 2962 -352 3211 180 43 47 chr11 24442851 24443574 -124339898 + LTR8A LTR ERV1 1 720 -7 229 299 47 56 chr11 24443640 24443747 -124339725 + L2 LINE L2 3204 3309 -4 1205 164 66 9 chr11 24443749 24443975 -124339497 + MER2 DNA MER2_type 106 344 -1 593 288 48 48 chr11 24445198 24445427 -124338045 - MIR SINE MIR -27 235 7 457 273 96 43 chr11 24445950 24446159 -124337313 - MIR SINE MIR 0 262 43 615 252 27 141 chr11 24446393 24446467 -124337005 + MER69 DNA AcHobo 512 593 -1933 1787 174 51 8 chr11 24446467 24446823 -124336649 + THE1C LTR MaLR 5 375 0 615 252 27 141 chr11 24446823 24447188 -124336284 + MER69 DNA AcHobo 593 901 -1625 2237 88 0 3 chr11 24447202 24447498 -124335974 + AluY SINE Alu 1 295 -16 422 33 33 0 chr11 24447520 24447580 -124335892 + L1P2 LINE L1 5456 5517 -637 24 0 0 0 chr11 24498210 24498234 -124285238 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 24498393 24498416 -124285056 + AT_rich Low_complexity Low_complexity 1 23 0 241 318 65 55 chr11 24498465 24498682 -124284790 - MIR SINE MIR -26 236 18 594 267 6 25 chr11 24499025 24499186 -124284286 + MIR SINE MIR 105 262 0 1719 139 164 6 chr11 24499803 24500162 -124283310 + MSTA LTR MaLR 1 416 -12 2631 214 107 56 chr11 24500266 24501420 -124282052 + L1MCb LINE L1 71 1306 -4866 5279 152 20 13 chr11 24501784 24502681 -124280791 + Tigger2 DNA MER2_type 1813 2715 -3 624 194 7 0 chr11 24504606 24504750 -124278722 + L1MA9 LINE L1 6166 6310 -2 1752 187 13 7 chr11 24504772 24505082 -124278390 + AluJb SINE Alu 1 312 0 8250 28 4 0 chr11 24506880 24508271 -124275201 - L1P1 LINE L1 -405 5750 4353 22 70 0 0 chr11 24508753 24508796 -124274676 + AT_rich Low_complexity Low_complexity 1 43 0 1460 164 67 22 chr11 24508800 24509069 -124274403 + AluJo SINE Alu 3 283 -29 200 311 14 27 chr11 24509699 24509773 -124273699 - MIR3 SINE MIR -130 78 6 263 272 89 29 chr11 24510810 24510977 -124272495 + MIR SINE MIR 13 248 -14 1639 152 37 4 chr11 24511074 24511343 -124272129 + AluJb SINE Alu 1 278 -34 180 27 81 0 chr11 24512153 24512190 -124271282 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 457 214 0 16 chr11 24512212 24512394 -124271078 + (TA)n Simple_repeat Simple_repeat 2 180 0 317 250 11 11 chr11 24512404 24512492 -124270980 + L1MC4 LINE L1 6615 6702 -1340 217 228 33 11 chr11 24512511 24512603 -124270869 + (TCTA)n Simple_repeat Simple_repeat 2 95 0 1572 121 0 16 chr11 24512682 24512930 -124270542 + L1PA13 LINE L1 5777 6020 -143 528 266 14 0 chr11 24513100 24513239 -124270233 + FLAM_C SINE Alu 1 141 -2 10210 43 30 0 chr11 24514477 24516145 -124267327 - L1P2 LINE L1 -427 5727 4009 232 318 12 12 chr11 24517124 24517209 -124266263 - MIR SINE MIR -110 152 68 424 225 0 0 chr11 24517404 24517475 -124265997 - FRAM SINE Alu -35 141 71 362 98 0 0 chr11 24517854 24517905 -124265567 + MSTA LTR MaLR 378 428 0 4829 197 41 18 chr11 24517905 24518388 -124265084 + MSTA-int LTR MaLR 1 471 -1180 2661 23 3 0 chr11 24518388 24518690 -124264782 + AluYa5 SINE Alu 1 303 -8 4829 197 41 18 chr11 24518690 24519206 -124264266 + MSTA-int LTR MaLR 471 1023 -628 404 228 120 44 chr11 24520556 24520714 -124262758 + L1M4 LINE L1 4092 4261 -1885 2391 191 13 9 chr11 24520834 24521289 -124262183 - MER39B LTR ERV1 -194 459 3 566 270 90 5 chr11 24521769 24521969 -124261503 - L2 LINE L2 -1638 1676 1460 334 307 18 18 chr11 24522907 24523021 -124260451 + MIR3 SINE MIR 64 177 -31 647 297 57 11 chr11 24523518 24523888 -124259584 + L1MEc LINE L1 1693 2079 -4317 279 286 17 25 chr11 24523931 24524050 -124259422 + L1ME1 LINE L1 1646 1763 -4633 2369 265 39 23 chr11 24524075 24524912 -124258560 + L1ME1 LINE L1 5367 6217 -18 771 224 64 113 chr11 24524943 24525106 -124258366 + L1ME1 LINE L1 5792 5961 -205 2852 6 0 0 chr11 24525106 24525417 -124258055 + AluYa5 SINE Alu 1 311 0 771 224 64 113 chr11 24525417 24525642 -124257830 + L1ME1 LINE L1 5961 6161 -5 792 102 81 1 chr11 24525880 24526015 -124257457 + THE1C LTR MaLR 200 407 -25 22 35 0 0 chr11 24526133 24526162 -124257310 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 24526695 24526730 -124256742 + AT_rich Low_complexity Low_complexity 1 35 0 2065 138 127 21 chr11 24527165 24527501 -124255971 + MSTA LTR MaLR 3 387 -41 2241 111 80 9 chr11 24527501 24527851 -124255621 + THE1C LTR MaLR 1 375 0 2065 138 127 21 chr11 24527851 24527899 -124255573 + MSTA LTR MaLR 387 428 0 567 115 0 0 chr11 24527914 24527992 -124255480 - THE1B LTR MaLR 0 364 287 3034 103 20 5 chr11 24527996 24528434 -124255038 - MLT2A2 LTR ERVL -8 445 1 1901 121 10 30 chr11 24528434 24528731 -124254741 - THE1B LTR MaLR -73 291 1 7696 175 162 7 chr11 24528731 24530097 -124253375 - THE1B-int LTR MaLR 0 1580 3 355 122 0 0 chr11 24530101 24530150 -124253322 - THE1B LTR MaLR -2 353 305 1038 228 0 0 chr11 24530150 24530339 -124253133 + L1PA12 LINE L1 1304 1492 -6089 427 167 0 13 chr11 24530342 24530420 -124253052 + MER30 DNA MER1_type 115 191 -39 553 319 0 0 chr11 24530437 24530603 -124252869 + L1PA12 LINE L1 1 166 -7415 5012 241 19 17 chr11 24530632 24532029 -124251443 + L1PA12 LINE L1 2301 3700 -3884 414 206 59 10 chr11 24533156 24533258 -124250214 + MLT1D LTR MaLR 3 109 -396 377 286 16 56 chr11 24533332 24533458 -124250014 - L2 LINE L2 0 3313 3193 233 318 73 47 chr11 24533598 24533790 -124249682 - L2 LINE L2 0 3313 3117 1156 310 74 27 chr11 24533905 24534570 -124248902 - L2 LINE L2 -299 3014 2231 555 348 61 51 chr11 24534631 24535003 -124248469 - L2 LINE L2 -276 3037 2658 280 174 0 0 chr11 24535127 24535173 -124248299 + MER52C LTR ERV1 427 472 -806 * 2469 115 211 41 chr11 24535172 24535684 -124247788 + MER52C LTR ERV1 680 1278 0 315 0 0 0 chr11 24535753 24535788 -124247684 + (TC)n Simple_repeat Simple_repeat 2 36 0 519 311 34 24 chr11 24536092 24536298 -124247174 + MLT1J2 LTR MaLR 1 208 -242 330 220 77 22 chr11 24536623 24536714 -124246758 + Zaphod DNA AcHobo 3935 4030 -1 517 297 55 31 chr11 24537205 24537753 -124245719 + L1MCc LINE L1 1354 1917 -4957 184 75 25 25 chr11 24537801 24537841 -124245631 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 424 290 15 7 chr11 24537856 24538036 -124245436 + L1M4 LINE L1 5567 5748 -414 357 93 0 0 chr11 24538135 24538189 -124245283 + (CA)n Simple_repeat Simple_repeat 1 54 0 303 301 91 6 chr11 24538203 24538379 -124245093 + L1MCc LINE L1 2089 2279 -4662 3130 186 35 17 chr11 24538480 24539082 -124244390 + MSTB-int LTR MaLR 1039 1651 0 1846 195 74 2 chr11 24539082 24539476 -124243996 + MSTB LTR MaLR 1 422 -4 2106 147 15 27 chr11 24539479 24539887 -124243585 + L1MA6 LINE L1 5898 6300 0 3071 219 69 21 chr11 24539949 24540974 -124242498 + L1MB7 LINE L1 5108 6184 0 21 0 0 0 chr11 24541407 24541428 -124242044 + AT_rich Low_complexity Low_complexity 1 21 0 314 258 41 0 chr11 24542129 24542226 -124241246 - L1M4 LINE L1 -2241 3905 3805 1069 231 30 7 chr11 24542253 24542522 -124240950 + MLT1D LTR MaLR 227 501 -4 1519 192 21 10 chr11 24542529 24542820 -124240652 + AluJo SINE Alu 1 294 -18 204 217 0 0 chr11 24543842 24543888 -124239584 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr11 24544039 24544068 -124239404 + AT_rich Low_complexity Low_complexity 1 29 0 6265 168 21 15 chr11 24546117 24548207 -124235265 - L1PA8A LINE L1 -2 6129 4122 10501 166 5 9 chr11 24548207 24548547 -124234925 + L1P LINE L1 2100 2440 -3706 2353 81 0 7 chr11 24548547 24548845 -124234627 + AluY SINE Alu 1 296 -15 10501 166 5 9 chr11 24548845 24550443 -124233029 + L1P LINE L1 2440 4029 -2117 737 78 0 142 chr11 24550543 24550684 -124232788 + L1P LINE L1 4004 4124 -2022 2712 168 31 4 chr11 24550708 24551251 -124232221 - L1MA4 LINE L1 -6 6294 5737 3099 118 28 2 chr11 24551251 24551724 -124231748 + LTR15 LTR ERV1 3 487 -6 715 185 0 8 chr11 24551730 24551860 -124231612 - L1MA4 LINE L1 -558 5742 5614 * 1478 228 31 10 chr11 24551858 24552274 -124231198 + L1 LINE L1 4920 5344 -802 1694 162 33 12 chr11 24552275 24552609 -124230863 + L1M1 LINE L1 5282 5622 -678 23 78 0 0 chr11 24552835 24552886 -124230586 + AT_rich Low_complexity Low_complexity 1 51 0 1267 189 158 25 chr11 24553266 24553588 -124229884 - MLT1A1 LTR MaLR 0 365 1 2152 120 0 16 chr11 24554158 24554466 -124229006 + AluSq SINE Alu 1 303 -10 181 265 41 0 chr11 24555692 24555741 -124227731 - L2 LINE L2 -337 2976 2926 7605 172 11 30 chr11 24555890 24557911 -124225561 - L1PA8A LINE L1 -178 5953 3982 3506 181 15 1 chr11 24557909 24558583 -124224889 - L1PA8A LINE L1 -2924 3222 2540 * 613 282 110 22 chr11 24558745 24559018 -124224454 - LTR16C LTR ERVL -8 483 187 2542 137 5 27 chr11 24559294 24559732 -124223740 + MSTA LTR MaLR 1 428 0 182 325 83 42 chr11 24559792 24559912 -124223560 - L2 LINE L2 -1 3271 3147 27 87 0 0 chr11 24559912 24559981 -124223491 + AT_rich Low_complexity Low_complexity 1 69 0 889 236 144 31 chr11 24560126 24560453 -124223019 - MLT1E1 LTR MaLR -290 364 1 223 300 22 22 chr11 24560664 24560754 -124222718 - L2 LINE L2 0 3313 3224 312 219 0 0 chr11 24561275 24561348 -124222124 - MER4C LTR ERV1 -116 349 277 2328 91 49 104 chr11 24561364 24561814 -124221658 - MER4A LTR ERV1 -239 425 1 23 54 0 0 chr11 24561964 24562001 -124221471 + AT_rich Low_complexity Low_complexity 1 37 0 228 372 23 0 chr11 24562546 24562632 -124220840 + L2 LINE L2 3224 3311 -2 246 314 137 8 chr11 24563265 24563389 -124220083 - MIR3 SINE MIR -10 198 59 1724 46 5 0 chr11 24564124 24564343 -124219129 + L1PA4 LINE L1 5933 6152 -3 209 349 101 7 chr11 24564941 24565090 -124218382 + MIR SINE MIR 22 184 -78 1694 188 7 3 chr11 24565808 24566101 -124217371 - AluJb SINE Alu -18 294 1 1827 288 58 32 chr11 24566144 24566507 -124216965 - L1M4 LINE L1 -1677 4469 4117 2022 102 7 4 chr11 24566507 24566782 -124216690 + AluSq SINE Alu 31 306 -7 1827 288 58 32 chr11 24566782 24567390 -124216082 - L1M4 LINE L1 -2029 4117 3473 824 235 50 16 chr11 24567466 24567765 -124215707 + MLT2B1 LTR ERVL 1 351 -46 180 77 0 0 chr11 24567765 24567791 -124215681 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 824 235 50 16 chr11 24567791 24567823 -124215649 + MLT2B1 LTR ERVL 351 380 -17 4511 145 50 3 chr11 24569510 24570282 -124213190 + L1PB4 LINE L1 5336 6144 -12 941 259 127 51 chr11 24570886 24571375 -124212097 + MLT1E3 LTR MaLR 52 596 -28 21 36 0 0 chr11 24572030 24572058 -124211414 + AT_rich Low_complexity Low_complexity 1 28 0 5798 117 22 7 chr11 24572058 24573354 -124210118 - L1PA14 LINE L1 -2 6159 4850 548 262 82 19 chr11 24573878 24574084 -124209388 + L1ME2 LINE L1 5924 6142 -22 243 0 0 0 chr11 24574302 24574329 -124209143 + (TA)n Simple_repeat Simple_repeat 1 27 0 1335 203 0 19 chr11 24574388 24574649 -124208823 + AluJo SINE Alu 1 256 -56 485 291 37 53 chr11 24574945 24575134 -124208338 - MIR SINE MIR -34 228 43 562 287 116 36 chr11 24576688 24576939 -124206533 - L2 LINE L2 -18 3295 3025 248 353 173 0 chr11 24577744 24577877 -124205595 + L2 LINE L2 3112 3267 -5 11505 279 42 29 chr11 24578439 24581776 -124201696 + L1PA12 LINE L1 1536 4828 -2756 1731 131 16 72 chr11 24581776 24582096 -124201376 + AluSx SINE Alu 1 302 -10 11505 279 42 29 chr11 24582096 24583049 -124200423 + L1PA12 LINE L1 4828 5767 -1817 2253 152 6 3 chr11 24583049 24583410 -124200062 - THE1B LTR MaLR 0 364 3 9676 118 35 32 chr11 24583412 24584988 -124198484 - THE1B-int LTR MaLR 0 1580 1 2347 141 6 0 chr11 24584988 24585350 -124198122 - THE1B LTR MaLR 0 364 1 11505 279 42 29 chr11 24585350 24586291 -124197181 + L1PA12 LINE L1 5766 6785 -799 998 283 55 19 chr11 24586344 24586757 -124196715 + L1M4 LINE L1 4545 4978 -1168 2122 131 57 20 chr11 24586757 24587108 -124196364 + THE1B LTR MaLR 1 364 0 998 283 55 19 chr11 24587108 24587164 -124196308 + L1M4 LINE L1 4978 5031 -1115 3447 175 11 21 chr11 24587254 24587968 -124195504 + L1MB3 LINE L1 5476 6182 -1 482 287 57 14 chr11 24587980 24588259 -124195213 + L1M4 LINE L1 5016 5306 -840 1282 278 65 15 chr11 24588310 24588713 -124194759 + MLT2F LTR ERVL 178 600 -63 285 323 32 0 chr11 24589634 24589727 -124193745 + MIR SINE MIR 45 140 -68 2124 112 3 0 chr11 24590846 24591141 -124192331 + AluSg SINE Alu 1 296 -14 482 160 0 0 chr11 24591223 24591298 -124192174 + AluJ/FLAM SINE Alu 1 75 -237 305 317 0 30 chr11 24591590 24591691 -124191781 + MLT1F LTR MaLR 86 183 -407 513 228 88 18 chr11 24591816 24591987 -124191485 + MLT1F LTR MaLR 354 536 -6 231 383 13 13 chr11 24591994 24592143 -124191329 + MLT1F-int LTR MaLR 2 150 -1221 375 335 34 38 chr11 24592144 24592407 -124191065 + MLT1F-int LTR MaLR 299 560 -811 2133 81 57 7 chr11 24592527 24592823 -124190649 + AluY SINE Alu 1 311 0 634 162 43 0 chr11 24593462 24593579 -124189893 - L1 LINE L1 -1335 4811 4690 610 114 0 0 chr11 24593648 24593736 -124189736 + L1M2 LINE L1 5641 5728 -572 2062 128 3 0 chr11 24593979 24594269 -124189203 - AluSx SINE Alu -1 311 21 21 89 0 0 chr11 24594970 24595026 -124188446 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 24596776 24596808 -124186664 + AT_rich Low_complexity Low_complexity 1 32 0 9955 181 52 23 chr11 24596842 24598950 -124184522 + L1M4c LINE L1 15 2184 -4200 797 198 19 53 chr11 24598952 24599159 -124184313 + MLT1A1 LTR MaLR 1 200 -165 189 74 0 0 chr11 24599321 24599348 -124184124 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1944 170 123 8 chr11 24599455 24599838 -124183634 - MSTA LTR MaLR 0 428 2 312 324 73 22 chr11 24600113 24600249 -124183223 + MIR SINE MIR 34 176 -86 540 206 42 32 chr11 24600888 24601077 -124182395 + HsTC2 DNA Tc2 1598 1788 -110 21 0 0 0 chr11 24602381 24602402 -124181070 + AT_rich Low_complexity Low_complexity 1 21 0 1639 157 27 7 chr11 24602982 24603281 -124180191 + L1PA16 LINE L1 5861 6165 -1 208 258 140 43 chr11 24603614 24603707 -124179765 - L3 LINE CR1 -116 1461 1360 1449 215 37 17 chr11 24603961 24604315 -124179157 + MLT1A1 LTR MaLR 1 365 0 305 287 44 59 chr11 24605082 24605342 -124178130 + MIR SINE MIR 26 237 -25 189 74 0 0 chr11 24605533 24605560 -124177912 + (CA)n Simple_repeat Simple_repeat 2 28 0 1228 206 60 122 chr11 24605795 24606329 -124177143 - MER67D LTR ERV1 -8 506 6 231 295 95 21 chr11 24606392 24606487 -124176985 + MIR SINE MIR 88 189 -73 24 0 0 0 chr11 24606878 24606902 -124176570 + AT_rich Low_complexity Low_complexity 1 24 0 899 251 172 39 chr11 24607776 24608218 -124175254 + MLT1D LTR MaLR 5 505 0 1413 121 24 0 chr11 24608937 24609143 -124174329 - AluSx SINE Alu -101 211 1 22 0 7 0 chr11 24609152 24609207 -124174265 + AT_rich Low_complexity Low_complexity 1 22 0 323 300 65 33 chr11 24610032 24610462 -124173010 + L1MEc LINE L1 1041 1484 -4912 309 118 0 0 chr11 24610511 24610562 -124172910 + Alu SINE Alu 252 302 0 324 229 14 0 chr11 24611316 24611386 -124172086 - MIR SINE MIR -110 152 82 1797 140 4 0 chr11 24611390 24611655 -124171817 + AluSq SINE Alu 1 266 -47 251 121 17 0 chr11 24611667 24611725 -124171747 + (CAA)n Simple_repeat Simple_repeat 2 60 0 196 235 78 0 chr11 24611772 24611823 -124171649 - MIR SINE MIR -21 241 187 1783 236 51 73 chr11 24612606 24613275 -124170197 + MLT1E1 LTR MaLR 1 654 0 2240 103 17 0 chr11 24613420 24613721 -124169751 - AluSq SINE Alu -7 306 1 204 40 0 0 chr11 24613866 24613891 -124169581 + (TG)n Simple_repeat Simple_repeat 1 25 0 414 304 83 35 chr11 24613940 24614352 -124169120 - L1M4 LINE L1 -2202 3944 3486 1783 117 4 8 chr11 24614352 24614617 -124168855 + AluSx SINE Alu 36 299 -13 414 304 83 35 chr11 24614617 24614669 -124168803 - L1M4 LINE L1 -2660 3486 3438 1487 271 110 34 chr11 24614952 24615318 -124168154 + L1ME3A LINE L1 5255 5592 -578 387 0 0 0 chr11 24615318 24615361 -124168111 + (CA)n Simple_repeat Simple_repeat 1 43 0 1487 271 110 34 chr11 24615361 24615564 -124167908 + L1ME3A LINE L1 5592 5778 -392 2234 139 104 28 chr11 24615564 24615996 -124167476 - MER4C LTR ERV1 0 465 1 1487 271 110 34 chr11 24615996 24616251 -124167221 + L1ME3A LINE L1 5778 6143 -27 423 237 82 55 chr11 24616277 24616496 -124166976 + L1M4 LINE L1 2964 3188 -2958 1602 147 8 4 chr11 24619401 24619659 -124163813 + AluSx SINE Alu 42 300 -12 21 0 0 0 chr11 24620055 24620076 -124163396 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 24620159 24620194 -124163278 + AT_rich Low_complexity Low_complexity 1 35 0 1685 238 143 5 chr11 24620198 24620618 -124162854 - MER66A LTR ERV1 0 478 1 213 380 0 28 chr11 24621238 24621346 -124162126 - L2 LINE L2 -17 3255 3151 322 280 233 27 chr11 24621629 24621779 -124161693 - MER5A DNA MER1_type 0 189 9 208 318 0 0 chr11 24621856 24621900 -124161572 + L2 LINE L2 3221 3264 -8 2203 89 0 26 chr11 24622780 24623108 -124160364 - AluY SINE Alu 0 311 1 2731 67 13 0 chr11 24624057 24624448 -124159024 - L1PA5 LINE L1 -2717 3429 3034 15360 43 14 2 chr11 24624448 24627137 -124156335 + L1PA5 LINE L1 3432 6140 -14 3617 59 8 4 chr11 24627237 24627713 -124155759 + L1PA5 LINE L1 5671 6148 -6 423 0 0 0 chr11 24627825 24627872 -124155600 + (CA)n Simple_repeat Simple_repeat 2 48 0 557 168 0 0 chr11 24627944 24628045 -124155427 + L1MA9 LINE L1 6176 6276 -36 25 31 0 0 chr11 24628356 24628388 -124155084 + AT_rich Low_complexity Low_complexity 1 32 0 225 278 0 0 chr11 24628408 24628462 -124155010 + MLT1J2 LTR MaLR 394 447 -3 223 263 12 62 chr11 24629348 24629428 -124154044 + L3b LINE CR1 1504 1579 -4 2362 117 5 48 chr11 24629626 24630020 -124153452 - MER51B LTR ERV1 0 377 1 1363 104 9 28 chr11 24630716 24630928 -124152544 - AluSg/x SINE Alu -10 302 95 1813 181 95 53 chr11 24632990 24633056 -124150416 + LTR38 LTR ERV1 107 169 -387 2205 109 6 10 chr11 24633056 24633368 -124150104 + AluSx SINE Alu 1 311 -1 1813 181 95 53 chr11 24633368 24633733 -124149739 + LTR38 LTR ERV1 169 556 0 293 303 43 32 chr11 24635899 24636087 -124147385 - HAL1 LINE L1 -1160 1347 1158 281 250 75 17 chr11 24636066 24636186 -124147286 - HAL1 LINE L1 -2324 183 57 * 262 333 30 71 chr11 24636480 24636648 -124146824 - L3 LINE CR1 -297 1280 1120 181 176 0 0 chr11 24636900 24636934 -124146538 - L3 LINE CR1 -876 701 668 666 271 114 50 chr11 24638591 24639172 -124144300 + L1ME LINE L1 5052 5671 -499 881 353 61 31 chr11 24639248 24640172 -124143300 + ERVL LTR ERVL 4140 5112 -652 624 308 31 81 chr11 24640634 24641053 -124142419 + LTR16A1 LTR ERVL 60 457 0 405 257 18 9 chr11 24641055 24641164 -124142308 + L1ME3A LINE L1 5616 5725 -445 1400 298 41 34 chr11 24641178 24641769 -124141703 + MLT1G1 LTR MaLR 1 595 0 485 255 150 24 chr11 24641812 24642059 -124141413 + L1ME3A LINE L1 5845 6122 -48 25 31 0 0 chr11 24642282 24642314 -124141158 + AT_rich Low_complexity Low_complexity 1 32 0 1020 230 34 4 chr11 24643094 24643456 -124140016 - MER67C LTR ERV1 -62 648 220 296 406 22 0 chr11 24644088 24644226 -124139246 + MIR SINE MIR 1 141 -121 197 250 75 25 chr11 24644617 24644697 -124138775 - MIR3 SINE MIR -1 207 124 381 273 36 29 chr11 24645806 24645945 -124137527 + LTR41 LTR ERVL 1 140 -633 530 169 49 49 chr11 24646287 24646429 -124137043 + LTR41 LTR ERVL 625 766 -7 819 284 34 29 chr11 24646505 24646744 -124136728 + MIR SINE MIR 18 257 -5 192 200 0 25 chr11 24646860 24646900 -124136572 + L2 LINE L2 3017 3055 -217 247 380 20 27 chr11 24649287 24649437 -124134035 - L2 LINE L2 -220 3052 2904 3446 170 36 68 chr11 24649657 24650491 -124132981 - L1MB1 LINE L1 -5 6163 5357 990 217 21 0 chr11 24650492 24650727 -124132745 + L1MB1 LINE L1 5112 5351 -795 23 0 0 0 chr11 24650736 24650759 -124132713 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 24651012 24651041 -124132431 + AT_rich Low_complexity Low_complexity 1 29 0 265 276 0 0 chr11 24651863 24651921 -124131551 + CT-rich Low_complexity Low_complexity 3 60 0 303 175 0 0 chr11 24652050 24652107 -124131365 + (TA)n Simple_repeat Simple_repeat 1 57 0 669 279 100 24 chr11 24653161 24653643 -124129829 - MLT1G1 LTR MaLR -2 593 3 234 314 41 8 chr11 24654519 24654640 -124128832 + MER94 DNA DNA 1 125 -9 12261 207 16 11 chr11 24654640 24658258 -124125214 + L1PA16 LINE L1 6 3527 -3322 4981 245 55 15 chr11 24658257 24659871 -124123601 + L1 LINE L1 3745 5423 -1426 * 1569 143 55 78 chr11 24659871 24660255 -124123217 + THE1C LTR MaLR 1 375 0 8537 148 82 8 chr11 24660255 24661726 -124121746 + THE1C-int LTR MaLR 1 1580 0 1609 133 52 75 chr11 24661726 24662110 -124121362 + THE1C LTR MaLR 1 375 0 2601 199 48 20 chr11 24662121 24663147 -124120325 + L1PA16 LINE L1 5431 6477 -392 1672 159 0 16 chr11 24663148 24663462 -124120010 + L1PA16 LINE L1 6561 6869 0 218 363 12 0 chr11 24663700 24663780 -124119692 + L2 LINE L2 3228 3308 -5 25 0 0 0 chr11 24664078 24664103 -124119369 + AT_rich Low_complexity Low_complexity 1 25 0 227 139 0 0 chr11 24664122 24664158 -124119314 - MLT1I LTR MaLR 0 409 374 1038 257 62 35 chr11 24664354 24664755 -124118717 - MLT1C LTR MaLR -3 464 53 189 0 0 0 chr11 24665339 24665360 -124118112 + (T)n Simple_repeat Simple_repeat 1 21 0 471 313 33 11 chr11 24665370 24665552 -124117920 - LTR16A1 LTR ERVL -5 452 267 260 286 0 0 chr11 24666074 24666151 -124117321 + A-rich Low_complexity Low_complexity 1 77 0 21 57 0 0 chr11 24666597 24666632 -124116840 + AT_rich Low_complexity Low_complexity 1 35 0 365 277 47 34 chr11 24668188 24668336 -124115136 - L1MC4 LINE L1 -1197 6845 6696 2602 230 38 35 chr11 24670565 24671329 -124112143 + L1MA9 LINE L1 5438 6203 -109 832 190 56 11 chr11 24671336 24671515 -124111957 - MER46A DNA MER2_type 0 236 50 793 254 6 0 chr11 24671519 24671692 -124111780 + FAM SINE Alu 2 175 0 603 222 0 22 chr11 24671692 24671827 -124111645 + FLAM_C SINE Alu 2 133 0 422 143 0 0 chr11 24671861 24671924 -124111548 - MER46A DNA MER2_type -173 63 1 276 227 0 0 chr11 24671924 24671990 -124111482 + L1MA9 LINE L1 6209 6274 -38 269 230 70 10 chr11 24672009 24672109 -124111363 + L1M4 LINE L1 4633 4738 -1408 779 148 5 56 chr11 24672156 24672352 -124111120 + L1MA4 LINE L1 6096 6281 -19 25 31 0 0 chr11 24672358 24672390 -124111082 + AT_rich Low_complexity Low_complexity 1 32 0 433 143 0 44 chr11 24672404 24672495 -124110977 + L1MA2 LINE L1 6218 6304 0 977 265 67 17 chr11 24672521 24672982 -124110490 + L1M4 LINE L1 4783 5266 -880 321 294 142 50 chr11 24673699 24673917 -124109555 - MIR SINE MIR -10 252 15 26 30 0 0 chr11 24674109 24674142 -124109330 + AT_rich Low_complexity Low_complexity 1 33 0 1859 144 13 7 chr11 24675294 24675593 -124107879 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 24676364 24676386 -124107086 + AT_rich Low_complexity Low_complexity 1 22 0 297 356 34 34 chr11 24676464 24676613 -124106859 + MIR3 SINE MIR 33 181 -27 203 231 44 33 chr11 24676645 24676736 -124106736 + CT-rich Low_complexity Low_complexity 3 94 0 227 196 65 0 chr11 24677771 24677817 -124105655 + L2 LINE L2 3263 3311 -2 1840 147 32 0 chr11 24678190 24678475 -124104997 - AluSx SINE Alu -18 294 1 22 0 0 0 chr11 24678561 24678583 -124104889 + AT_rich Low_complexity Low_complexity 1 22 0 6699 36 1 0 chr11 24680086 24680890 -124102582 - L1PA3 LINE L1 -1432 4714 3910 7261 36 10 0 chr11 24680891 24682321 -124101151 + L1PA3 LINE L1 4714 6152 -3 645 227 0 23 chr11 24682387 24682519 -124100953 + FLAM_C SINE Alu 1 129 -4 273 204 20 20 chr11 24682524 24682622 -124100850 + A-rich Low_complexity Low_complexity 3 100 0 249 171 0 0 chr11 24682622 24682663 -124100809 + GA-rich Low_complexity Low_complexity 4 44 0 851 76 0 78 chr11 24682664 24683057 -124100415 + (GGAA)n Simple_repeat Simple_repeat 1 362 0 572 173 218 8 chr11 24683078 24683211 -124100261 + FAM SINE Alu 6 166 -19 23 54 0 0 chr11 24683331 24683368 -124100104 + AT_rich Low_complexity Low_complexity 1 37 0 531 296 16 21 chr11 24683582 24683771 -124099701 - MIR SINE MIR -11 251 64 733 344 121 24 chr11 24684045 24684936 -124098536 - L2 LINE L2 -33 3280 2329 752 217 56 17 chr11 24685464 24685644 -124097828 - MLT1B LTR MaLR -3 387 201 700 341 79 36 chr11 24686038 24686454 -124097018 + L3 LINE CR1 1130 1563 -14 2242 127 16 50 chr11 24687312 24687689 -124095783 - THE1B LTR MaLR 0 364 1 9283 139 11 61 chr11 24687689 24689352 -124094120 - THE1B-int LTR MaLR 0 1580 1 2202 148 22 6 chr11 24689352 24689710 -124093762 - THE1B LTR MaLR 0 364 1 272 337 56 32 chr11 24690138 24690707 -124092765 - L1M4 LINE L1 -1821 4325 3743 384 288 82 17 chr11 24690722 24690955 -124092517 - L1M4 LINE L1 -2984 3162 2915 338 349 136 44 chr11 24691538 24691971 -124091501 + L2 LINE L2 2836 3308 -5 625 290 6 0 chr11 24692664 24692840 -124090632 + MSTD LTR MaLR 1 177 -219 8524 207 27 38 chr11 24692848 24693704 -124089768 - L1PB4 LINE L1 -5 6151 5287 863 90 0 15 chr11 24693704 24693837 -124089635 - L1PA13 LINE L1 -1 6162 6032 8524 207 27 38 chr11 24693837 24695172 -124088300 - L1PB4 LINE L1 -869 5287 3939 4906 96 133 0 chr11 24695172 24695901 -124087571 + LTR12 LTR ERV1 1 826 0 8524 207 27 38 chr11 24695901 24696269 -124087203 - L1PB4 LINE L1 -2217 3939 3568 383 62 31 0 chr11 24696269 24696333 -124087139 + L1PB2 LINE L1 6086 6151 0 8524 207 27 38 chr11 24696333 24696347 -124087125 - L1PB4 LINE L1 -2588 3568 3555 767 238 6 24 chr11 24696347 24696515 -124086957 + FRAM SINE Alu 1 165 -1 8524 207 27 38 chr11 24696515 24697233 -124086239 - L1PB4 LINE L1 -2601 3555 2903 31 0 0 0 chr11 24697783 24697814 -124085658 + AT_rich Low_complexity Low_complexity 1 31 0 236 330 55 0 chr11 24697864 24697980 -124085492 + MIR SINE MIR 36 157 -51 22 35 0 0 chr11 24699356 24699385 -124084087 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr11 24699511 24699547 -124083925 + AT_rich Low_complexity Low_complexity 1 36 0 1588 205 27 67 chr11 24699732 24700137 -124083335 - MLT1B LTR MaLR 0 390 2 1142 150 0 0 chr11 24700628 24700801 -124082671 - AluSg/x SINE Alu -2 310 138 303 93 0 0 chr11 24700945 24700988 -124082484 + (T)n Simple_repeat Simple_repeat 1 43 0 200 233 17 0 chr11 24701555 24701615 -124081857 + (TA)n Simple_repeat Simple_repeat 1 61 0 2146 123 0 0 chr11 24702990 24703283 -124080189 + AluSc SINE Alu 3 295 -14 22 35 0 0 chr11 24703689 24703718 -124079754 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 24704973 24705002 -124078470 + AT_rich Low_complexity Low_complexity 1 29 0 504 294 46 42 chr11 24705004 24705596 -124077876 - L1ME3A LINE L1 -135 6035 5294 22 0 0 0 chr11 24706218 24706240 -124077232 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 65 8 chr11 24706323 24706446 -124077026 + MIR SINE MIR 71 200 -62 607 311 63 8 chr11 24708441 24708679 -124074793 + MIR SINE MIR 12 262 0 4212 212 28 27 chr11 24709150 24710607 -124072865 - L1P4 LINE L1 -489 6327 4879 * 4265 281 33 39 chr11 24710591 24711330 -124072142 - L1P4 LINE L1 -2782 4015 3273 2186 145 71 22 chr11 24711330 24711535 -124071937 + MSTA LTR MaLR 1 195 -233 243 0 0 0 chr11 24711535 24711562 -124071910 + (TC)n Simple_repeat Simple_repeat 1 27 0 2186 145 71 22 chr11 24711562 24711764 -124071708 + MSTA LTR MaLR 195 428 0 4265 281 33 39 chr11 24711764 24712545 -124070927 - L1P4 LINE L1 -3524 3273 2489 1923 81 97 4 chr11 24712545 24712843 -124070629 - AluY SINE Alu 0 322 1 4265 281 33 39 chr11 24712843 24714669 -124068803 - L1P4 LINE L1 -4308 2489 2 348 242 172 0 chr11 24714669 24714768 -124068704 - MLT1A2 LTR MaLR -244 130 15 376 172 11 0 chr11 24714865 24714952 -124068520 - L1ME3A LINE L1 -1096 5050 4963 446 0 19 0 chr11 24715366 24715420 -124068052 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1512 28 6 0 chr11 24715701 24715880 -124067592 + AluY SINE Alu 128 307 -4 1143 253 118 45 chr11 24715893 24716360 -124067112 + MLT1D LTR MaLR 5 505 0 188 400 0 0 chr11 24716635 24716715 -124066757 - MER5B DNA MER1_type -98 80 1 1106 324 47 50 chr11 24718051 24719150 -124064322 + L1PA16 LINE L1 8 2183 -5398 12256 240 36 26 chr11 24719383 24723208 -124060264 + L1PA16 LINE L1 2182 5969 -1635 1966 205 43 80 chr11 24723208 24723783 -124059689 + MLT2B3 LTR ERVL 1 554 0 12256 240 36 26 chr11 24723783 24724738 -124058734 + L1PA16 LINE L1 5969 7035 -569 1918 104 11 3 chr11 24724738 24725025 -124058447 - AluSq SINE Alu -24 289 1 12256 240 36 26 chr11 24725025 24725591 -124057881 + L1PA16 LINE L1 7035 7594 -10 370 77 0 0 chr11 24725859 24725911 -124057561 - L1PA6 LINE L1 0 6154 6103 273 282 14 0 chr11 24725911 24725982 -124057490 + MER94 DNA DNA 7 78 -56 220 348 170 4 chr11 24726208 24726461 -124057011 + L2 LINE L2 3019 3313 0 397 192 39 15 chr11 24727664 24727794 -124055678 + CT-rich Low_complexity Low_complexity 4 136 0 22 0 0 0 chr11 24728378 24728400 -124055072 + AT_rich Low_complexity Low_complexity 1 22 0 297 324 35 21 chr11 24728681 24728823 -124054649 - MIR SINE MIR -26 236 93 1219 298 86 19 chr11 24729574 24729723 -124053749 - L1ME3A LINE L1 -9 6161 6023 2027 101 18 0 chr11 24729723 24730038 -124053434 + AluSx SINE Alu 1 320 0 1219 298 86 19 chr11 24730038 24730455 -124053017 - L1ME3A LINE L1 -147 6023 5556 406 244 30 59 chr11 24730590 24730725 -124052747 - L1MDa LINE L1 -6328 212 82 21 0 0 0 chr11 24731117 24731138 -124052334 + AT_rich Low_complexity Low_complexity 1 21 0 13592 35 2 5 chr11 24731785 24733507 -124049965 - L1P LINE L1 -2440 3706 1990 1304 221 63 20 chr11 24734152 24734530 -124048942 - MLT1B LTR MaLR 0 390 4 257 340 31 10 chr11 24734568 24734665 -124048807 - L2 LINE L2 -6 3266 3168 1619 285 105 31 chr11 24735336 24736514 -124046958 - L1ME2 LINE L1 -2 6162 4845 2443 160 24 7 chr11 24736514 24736932 -124046540 - MER61B LTR ERV1 0 425 1 1619 285 105 31 chr11 24736932 24737224 -124046248 - L1ME2 LINE L1 -1319 4845 4576 621 284 132 24 chr11 24737274 24737856 -124045616 - L1ME2 LINE L1 -2129 4017 3373 21 0 0 0 chr11 24738009 24738030 -124045442 + AT_rich Low_complexity Low_complexity 1 21 0 2354 76 0 16 chr11 24738756 24739071 -124044401 - AluY SINE Alu -1 310 1 31 58 0 0 chr11 24739494 24739546 -124043926 + AT_rich Low_complexity Low_complexity 1 52 0 768 164 63 6 chr11 24739546 24739705 -124043767 - L1MA7 LINE L1 -48 6243 6076 2005 277 55 38 chr11 24740352 24741594 -124041878 - L1M1 LINE L1 -4159 3407 2264 708 313 65 52 chr11 24742020 24742480 -124040992 - L1M1 LINE L1 -5813 1683 1218 5351 173 69 20 chr11 24742513 24743009 -124040463 + Tigger3b DNA MER2_type 2 472 -2556 2367 43 23 13 chr11 24743009 24743310 -124040162 - AluY SINE Alu -7 304 1 5351 173 69 20 chr11 24743310 24743986 -124039486 + Tigger3b DNA MER2_type 472 1231 0 1801 232 54 22 chr11 24744306 24744845 -124038627 + LTR38 LTR ERV1 1 556 0 338 352 55 40 chr11 24795324 24795722 -123987750 + L2 LINE L2 2244 2647 -667 2426 93 0 3 chr11 24795939 24796252 -123987220 + AluSp SINE Alu 1 312 -1 199 287 85 53 chr11 24797346 24797440 -123986032 + MER5A DNA MER1_type 7 103 -86 228 135 0 0 chr11 24797473 24797510 -123985962 + (TG)n Simple_repeat Simple_repeat 2 38 0 251 203 0 0 chr11 24797518 24797582 -123985890 - L1MC4 LINE L1 -1339 6703 6640 518 309 206 36 chr11 24797843 24798371 -123985101 + MLT2F LTR ERVL 1 618 -45 1756 163 53 14 chr11 24798446 24798807 -123984665 - THE1C LTR MaLR 0 375 1 3343 126 34 13 chr11 24798814 24799371 -123984101 - THE1C-int LTR MaLR -7 1573 1005 768 107 57 0 chr11 24799654 24799776 -123983696 + HERVK14 LTR ERVK 4272 4400 -1545 * 3209 64 30 1 chr11 24799775 24800433 -123983039 + HERVK14 LTR ERVK 5013 5759 -186 314 206 0 18 chr11 24800433 24800508 -123982964 + MER41C LTR ERV1 1 61 -493 524 58 66 157 chr11 24800509 24800630 -123982842 + HERVK14 LTR ERVK 5836 5945 0 4385 70 39 3 chr11 24800633 24801220 -123982252 + LTR14B LTR ERVK 1 608 0 331 352 0 0 chr11 24801231 24801339 -123982133 - LTR16C LTR ERVL -316 175 68 369 342 32 21 chr11 24801407 24801594 -123981878 - MIR SINE MIR -63 199 11 271 423 0 7 chr11 24802217 24802359 -123981113 + L2 LINE L2 2831 2971 -301 600 257 75 7 chr11 24802362 24802654 -123980818 + L1ME1 LINE L1 4019 4330 -1816 6141 260 26 13 chr11 24802657 24805590 -123977882 - L1PA12 LINE L1 -2324 5260 2264 309 356 49 26 chr11 24806208 24806593 -123976879 - L1PA12 LINE L1 -6202 1372 979 827 262 187 22 chr11 24806611 24807156 -123976316 + L1ME1 LINE L1 4635 5269 -877 241 211 0 77 chr11 24807166 24807270 -123976202 + L1MC4 LINE L1 6614 6709 -1333 1451 257 66 59 chr11 24807289 24808133 -123975339 + L1ME1 LINE L1 5281 6165 -1 892 333 71 2 chr11 24809186 24809606 -123973866 - LTR16B LTR ERVL -11 453 5 1146 329 57 30 chr11 24809908 24811086 -123972386 - HERV16 LTR ERVL -3423 1573 355 1267 292 33 9 chr11 24811381 24811830 -123971642 - LTR16B LTR ERVL -4 460 1 184 364 15 0 chr11 24812324 24812390 -123971082 + L2 LINE L2 3247 3313 0 21 89 0 0 chr11 24812765 24812821 -123970651 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 24814276 24814297 -123969175 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 24814385 24814406 -123969066 + AT_rich Low_complexity Low_complexity 1 21 0 2351 133 11 6 chr11 24814558 24814920 -123968552 - THE1B LTR MaLR 0 364 1 192 77 0 0 chr11 24815363 24815389 -123968083 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 647 132 40 29 chr11 24815393 24815567 -123967905 + CT-rich Low_complexity Low_complexity 3 178 0 212 129 0 0 chr11 24815571 24815602 -123967870 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 412 284 86 75 chr11 24815603 24815895 -123967577 - L1MC4 LINE L1 -977 7065 6771 660 345 105 20 chr11 24816111 24816560 -123966912 - L2 LINE L2 -1 3312 2826 195 271 62 0 chr11 24818090 24818138 -123965334 - L2 LINE L2 -74 3239 3189 25 0 0 0 chr11 24819474 24819499 -123963973 + AT_rich Low_complexity Low_complexity 1 25 0 1586 221 67 81 chr11 24819709 24820230 -123963242 - MLT2B2 LTR ERVL 0 515 2 254 253 135 18 chr11 24820245 24820415 -123963057 - L1ME LINE L1 -306 5815 5626 636 253 10 35 chr11 24821022 24821220 -123962252 - MER3 DNA MER1_type -4 205 13 23 33 0 0 chr11 24823196 24823226 -123960246 + AT_rich Low_complexity Low_complexity 1 30 0 218 342 41 66 chr11 24823341 24823537 -123959935 - L2 LINE L2 -221 3051 2861 267 257 43 0 chr11 24823968 24824038 -123959434 - L2 LINE L2 -2 3270 3198 277 328 101 0 chr11 24824253 24824372 -123959100 - L2 LINE L2 -1 3312 3182 250 299 186 10 chr11 24825405 24825502 -123957970 - L2 LINE L2 0 3313 3200 22 56 0 0 chr11 24826429 24826465 -123957007 + AT_rich Low_complexity Low_complexity 1 36 0 447 125 0 0 chr11 24826477 24826541 -123956931 - AluS SINE Alu -240 70 7 489 256 0 17 chr11 24827141 24827258 -123956214 - L1M3 LINE L1 -562 5772 5658 1713 163 22 22 chr11 24827267 24827628 -123955844 + L1MA10 LINE L1 5967 6327 -7 2121 128 3 0 chr11 24827630 24827936 -123955536 + AluSx SINE Alu 1 307 -5 23 86 0 0 chr11 24828214 24828272 -123955200 + AT_rich Low_complexity Low_complexity 1 58 0 25 65 0 0 chr11 24828527 24828573 -123954899 + AT_rich Low_complexity Low_complexity 1 46 0 324 276 35 0 chr11 24829083 24829170 -123954302 + MER94 DNA DNA 43 132 -2 533 238 111 6 chr11 24829338 24829519 -123953953 - MIR SINE MIR -25 237 38 272 183 167 33 chr11 24832398 24832518 -123950954 - Charlie7 DNA MER1_type -2443 169 34 1675 199 22 14 chr11 24833154 24833516 -123949956 - MLT1A1 LTR MaLR 0 365 1 215 103 26 0 chr11 24834751 24834790 -123948682 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 189 378 57 10 chr11 24835887 24836080 -123947392 + L2 LINE L2 2437 2638 -676 25 51 0 0 chr11 24836912 24836951 -123946521 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 24837694 24837715 -123945757 + AT_rich Low_complexity Low_complexity 1 21 0 190 0 67 0 chr11 24838564 24838594 -123944878 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 7157 37 8 0 chr11 24838594 24840003 -123943469 - L1PA4 LINE L1 -1 6154 4730 250 231 19 0 chr11 24840389 24840441 -123943031 + MIR3 SINE MIR 130 182 -26 1272 265 39 48 chr11 24840637 24841098 -123942374 - MLT1C LTR MaLR 0 467 11 344 263 81 0 chr11 24841618 24841717 -123941755 - MIR SINE MIR -87 175 69 2498 172 13 99 chr11 24841813 24842418 -123941054 - MLT2B3 LTR ERVL 0 554 2 21 0 0 0 chr11 24842528 24842549 -123940923 + AT_rich Low_complexity Low_complexity 1 21 0 202 255 123 47 chr11 24842817 24842923 -123940549 - MIR SINE MIR -1 261 148 253 257 99 10 chr11 24843100 24843201 -123940271 - MIR SINE MIR -113 149 40 480 287 83 28 chr11 24843948 24844164 -123939308 + MIR SINE MIR 11 238 -24 423 300 46 21 chr11 24844178 24844458 -123939014 + HAL1 LINE L1 1751 2037 -470 4360 104 222 82 chr11 24844614 24845956 -123937516 - pTR5 LTR ERV1 0 2438 743 1288 275 73 14 chr11 24846592 24847028 -123936444 - MLT1C LTR MaLR 0 467 6 252 181 248 9 chr11 24847038 24847143 -123936329 - MLT1C-int LTR MaLR -5 1366 1237 874 223 23 62 chr11 24847340 24847596 -123935876 + L1ME3 LINE L1 5886 6131 -31 1294 220 9 28 chr11 24847619 24847937 -123935535 + AluJb SINE Alu 1 312 0 204 194 0 32 chr11 24847940 24848002 -123935470 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 33 25 0 0 chr11 24848710 24848750 -123934722 + AT_rich Low_complexity Low_complexity 1 40 0 688 144 96 8 chr11 24848841 24848966 -123934506 + L1PA15-16 LINE L1 1 136 -6713 * 2898 138 21 38 chr11 24848960 24849517 -123933955 + L1PA15-16 LINE L1 1884 2431 -4418 17344 176 74 9 chr11 24849517 24850220 -123933252 + L1PA16 LINE L1 1026 1682 -4484 18896 50 5 2 chr11 24850220 24853430 -123930042 - L1PA5 LINE L1 0 6154 2939 17344 176 74 9 chr11 24853430 24856538 -123926934 + L1PA16 LINE L1 1682 4574 -1592 411 21 0 0 chr11 24856538 24856586 -123926886 + (CA)n Simple_repeat Simple_repeat 1 48 0 17344 176 74 9 chr11 24856586 24858170 -123925302 + L1PA16 LINE L1 4574 6053 -113 206 200 18 73 chr11 24858730 24858785 -123924687 - MER5A DNA MER1_type 0 189 138 1047 264 106 19 chr11 24858930 24859297 -123924175 - LTR16B LTR ERVL -65 399 1 554 244 76 8 chr11 24859297 24859428 -123924044 - MER5A DNA MER1_type -43 146 7 699 266 30 15 chr11 24860882 24861085 -123922387 + MLT1C LTR MaLR 262 467 0 2250 214 34 84 chr11 24861085 24861753 -123921719 + MLT1C-int LTR MaLR 1 635 -736 5577 58 0 0 chr11 24861804 24862517 -123920955 - L1P LINE L1 -1128 5018 4306 217 320 53 73 chr11 24862789 24862939 -123920533 - MIR SINE MIR -113 149 3 368 336 107 77 chr11 24863735 24864342 -123919130 + L2 LINE L2 2077 2701 -613 22 94 0 0 chr11 24864601 24864665 -123918807 + AT_rich Low_complexity Low_complexity 1 64 0 216 167 0 0 chr11 24864988 24865024 -123918448 + (CA)n Simple_repeat Simple_repeat 2 37 0 2003 130 0 0 chr11 24865258 24865629 -123917843 - AluSx SINE Alu 0 371 1 181 274 65 16 chr11 24865645 24865707 -123917765 + L2 LINE L2 3204 3268 -4 23 101 0 0 chr11 24865806 24865885 -123917587 + AT_rich Low_complexity Low_complexity 1 79 0 351 305 118 21 chr11 24866056 24866243 -123917229 - MIR SINE MIR 0 262 58 25 31 0 0 chr11 24866257 24866289 -123917183 + AT_rich Low_complexity Low_complexity 1 32 0 536 307 99 39 chr11 24866387 24866845 -123916627 - MLT1H1 LTR MaLR 0 555 32 207 69 0 0 chr11 24867201 24867230 -123916242 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr11 24867630 24867653 -123915819 + AT_rich Low_complexity Low_complexity 1 23 0 658 110 50 0 chr11 24867881 24867981 -123915491 - Tigger1 DNA MER2_type -1597 821 717 23 54 0 0 chr11 24867985 24868022 -123915450 + AT_rich Low_complexity Low_complexity 1 37 0 261 247 21 21 chr11 24868384 24868477 -123914995 + GA-rich Low_complexity Low_complexity 2 94 0 385 320 56 15 chr11 24869816 24870013 -123913459 + LTR68 LTR ERV1 208 412 -328 441 0 0 0 chr11 24870274 24870323 -123913149 + (TG)n Simple_repeat Simple_repeat 2 50 0 2354 86 0 10 chr11 24870411 24870715 -123912757 + AluSp SINE Alu 1 301 -12 980 255 136 3 chr11 24871082 24871392 -123912080 + MER110A LTR ERV1 1 351 -117 261 320 102 16 chr11 24871935 24872063 -123911409 + MIR SINE MIR 124 262 0 21 0 0 0 chr11 24872365 24872386 -123911086 + AT_rich Low_complexity Low_complexity 1 21 0 800 206 52 99 chr11 24872545 24872910 -123910562 + LTR37A LTR ERV1 79 426 0 2219 150 31 72 chr11 24873240 24873573 -123909899 + MSTA LTR MaLR 1 346 -82 1909 134 0 77 chr11 24873573 24873938 -123909534 + MER1B DNA MER1_type 1 337 0 2219 150 31 72 chr11 24873938 24873982 -123909490 + MSTA LTR MaLR 346 360 -68 2277 91 7 0 chr11 24873982 24874291 -123909181 + AluSp SINE Alu 1 311 -2 2219 150 31 72 chr11 24874291 24874358 -123909114 + MSTA LTR MaLR 360 428 0 21 0 0 0 chr11 24874874 24874895 -123908577 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 24876272 24876293 -123907179 + AT_rich Low_complexity Low_complexity 1 21 0 462 18 0 0 chr11 24876424 24876479 -123906993 + (CA)n Simple_repeat Simple_repeat 2 56 0 30 0 0 0 chr11 24876693 24876723 -123906749 + AT_rich Low_complexity Low_complexity 1 30 0 372 185 54 9 chr11 24876728 24877051 -123906421 + (TA)n Simple_repeat Simple_repeat 1 337 0 21 0 0 0 chr11 24877193 24877214 -123906258 + AT_rich Low_complexity Low_complexity 1 21 0 377 331 54 0 chr11 24878945 24879075 -123904397 + MIR SINE MIR 55 191 -71 23 68 0 0 chr11 24879422 24879466 -123904006 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 24879695 24879725 -123903747 + AT_rich Low_complexity Low_complexity 1 30 0 1351 177 4 35 chr11 24880061 24880321 -123903151 + AluJo SINE Alu 2 253 -59 1419 189 48 22 chr11 24880332 24880645 -123902827 + THE1C LTR MaLR 55 375 0 8594 159 14 37 chr11 24880648 24882262 -123901210 + THE1C-int LTR MaLR 4 1580 0 1343 149 64 34 chr11 24882262 24882557 -123900915 + THE1C LTR MaLR 1 304 -71 22 0 0 0 chr11 24882782 24882804 -123900668 + AT_rich Low_complexity Low_complexity 1 22 0 233 285 118 59 chr11 24882996 24883182 -123900290 - MIR SINE MIR -13 249 53 332 212 12 24 chr11 24883896 24883981 -123899491 + LTR33A LTR ERVL 440 523 0 1340 142 3 154 chr11 24885831 24886208 -123897264 - AluSx SINE Alu 0 327 1 25 65 0 0 chr11 24886369 24886415 -123897057 + AT_rich Low_complexity Low_complexity 1 46 0 264 315 67 55 chr11 24886764 24886929 -123896543 + MER5B DNA MER1_type 4 184 -5 4558 120 14 26 chr11 24887531 24888298 -123895174 - L1MA3 LINE L1 -2 6303 5546 9677 175 35 34 chr11 24888298 24890475 -123892997 - L1M1 LINE L1 -4178 3387 88 303 49 0 0 chr11 24890475 24890516 -123892956 + (TG)n Simple_repeat Simple_repeat 1 41 0 9677 175 35 34 chr11 24890516 24890592 -123892880 - L1M1 LINE L1 -7477 88 14 1054 245 44 26 chr11 24891120 24891504 -123891968 - MER69 DNA AcHobo -42 2484 2094 2342 97 0 3 chr11 24891606 24891914 -123891558 - AluSc SINE Alu -2 307 1 821 233 44 29 chr11 24892300 24892506 -123890966 - MER58A DNA MER1_type -15 209 1 217 345 83 21 chr11 24894108 24894253 -123889219 - MIR SINE MIR 0 262 109 217 286 0 0 chr11 24894261 24894310 -123889162 - MIR SINE MIR -203 59 11 207 0 0 0 chr11 24895155 24895178 -123888294 + (A)n Simple_repeat Simple_repeat 1 23 0 1219 137 0 0 chr11 24895178 24895360 -123888112 + AluSc SINE Alu 119 300 -9 522 305 174 30 chr11 24896307 24896605 -123886867 + MER115 DNA AcHobo 316 656 -37 190 350 29 29 chr11 24896769 24896872 -123886600 + L2 LINE L2 2933 3035 -237 254 289 0 0 chr11 24897380 24897470 -123886002 - L1MC4 LINE L1 -1339 6703 6614 25 75 0 0 chr11 24897481 24897534 -123885938 + AT_rich Low_complexity Low_complexity 1 53 0 2641 158 55 29 chr11 24897757 24898306 -123885166 + L1MC1 LINE L1 5755 6317 -16 480 264 58 19 chr11 24898651 24898909 -123884563 + L1MDa LINE L1 2281 2548 -3992 278 173 120 0 chr11 24898934 24899009 -123884463 + L1MDa LINE L1 2531 2614 -3926 42878 29 21 1 chr11 24899009 24905028 -123878444 + L1HS LINE L1 2 6144 -11 936 251 108 8 chr11 24905192 24905590 -123877882 + L1MDa LINE L1 2761 3198 -3342 234 0 0 0 chr11 24906079 24906105 -123877367 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1203 283 43 5 chr11 24906296 24906670 -123876802 + MER63 DNA MER1_type 673 1060 0 824 179 7 32 chr11 24906825 24907086 -123876386 + CT-rich Low_complexity Low_complexity 1 254 0 1160 147 32 5 chr11 24907087 24907277 -123876195 - AluSx SINE Alu -117 195 1 246 239 28 0 chr11 24907298 24907369 -123876103 + CT-rich Low_complexity Low_complexity 2 74 0 1293 173 20 0 chr11 24909018 24909267 -123874205 - L1MA5 LINE L1 0 6300 6047 1922 144 7 16 chr11 24909270 24909575 -123873897 - AluSx SINE Alu -7 305 4 4714 127 31 14 chr11 24909582 24910349 -123873123 + LTR17 LTR ERV1 1 780 0 2779 182 24 9 chr11 24910368 24910911 -123872561 + L1MA5 LINE L1 5478 6028 -272 723 278 35 66 chr11 24911628 24912024 -123871448 - L1ME2 LINE L1 -1 6163 5780 2133 168 36 32 chr11 24912026 24912573 -123870899 - MLT2A2 LTR ERVL -2 552 1 396 317 37 22 chr11 24912574 24912842 -123870630 - L1ME2 LINE L1 -386 5780 5509 630 231 139 54 chr11 24912845 24913115 -123870357 - L1ME2 LINE L1 -724 5438 5192 1762 83 91 26 chr11 24913115 24913438 -123870034 + AluSg SINE Alu 1 340 0 630 231 139 54 chr11 24913438 24913674 -123869798 - L1ME2 LINE L1 -970 5192 4869 1710 245 67 60 chr11 24913699 24914233 -123869239 + MER77 LTR ERV1 55 592 -13 635 267 148 3 chr11 24914264 24914609 -123868863 - L1ME2 LINE L1 -1279 4867 4473 211 298 0 0 chr11 24914857 24914914 -123868558 + GA-rich Low_complexity Low_complexity 4 60 0 243 0 0 0 chr11 24914993 24915020 -123868452 + (CA)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr11 24915113 24915141 -123868331 + AT_rich Low_complexity Low_complexity 1 28 0 1652 152 71 9 chr11 24915249 24915572 -123867900 - MER61A LTR ERV1 0 343 1 862 354 70 11 chr11 24916316 24916886 -123866586 + ERVL LTR ERVL 4072 4675 -1089 303 232 152 0 chr11 24917140 24917252 -123866220 - MER104 DNA Tc2 -51 129 1 301 306 62 16 chr11 24917332 24917525 -123865947 - L1ME3A LINE L1 -289 5881 5680 435 312 45 9 chr11 24917656 24917877 -123865595 - L1ME3A LINE L1 -577 5585 5357 381 43 0 0 chr11 24918497 24918544 -123864928 + (CA)n Simple_repeat Simple_repeat 2 48 0 788 166 21 0 chr11 24918548 24918693 -123864779 - L1MA7 LINE L1 -41 6250 6103 252 86 0 0 chr11 24918921 24918956 -123864516 + (TA)n Simple_repeat Simple_repeat 1 35 0 255 350 72 22 chr11 24920716 24920866 -123862606 + MIR SINE MIR 3 159 -70 306 243 189 9 chr11 24921086 24921197 -123862275 + L2 LINE L2 3183 3313 0 339 344 77 57 chr11 24922356 24922603 -123860869 - MIR SINE MIR -6 256 5 1972 160 45 1 chr11 24922817 24923462 -123860010 - L1P5 LINE L1 -584 5570 4904 5750 185 50 24 chr11 24923485 24924054 -123859418 - L1PBb LINE L1 -3264 2939 2387 2206 95 7 3 chr11 24924054 24924359 -123859113 + AluY SINE Alu 1 306 -5 5750 185 50 24 chr11 24924359 24926097 -123857375 - L1PBb LINE L1 -3816 2387 544 2184 116 0 0 chr11 24926097 24926391 -123857081 + AluSx SINE Alu 1 294 -18 5750 185 50 24 chr11 24926391 24926895 -123856577 - L1PBb LINE L1 -5659 544 55 4610 29 7 0 chr11 24926895 24927444 -123856028 + L1PA4 LINE L1 5601 6153 -2 31 0 0 0 chr11 24927449 24927480 -123855992 + AT_rich Low_complexity Low_complexity 1 31 0 3940 294 28 28 chr11 24927497 24927981 -123855491 - L1PBa LINE L1 -5224 1639 1156 2015 151 40 0 chr11 24927981 24928305 -123855167 - MER1B DNA MER1_type 0 337 1 3940 294 28 28 chr11 24928305 24929457 -123854015 - L1PBa LINE L1 -5706 1157 3 1754 151 4 0 chr11 24929904 24930163 -123853309 + AluSx SINE Alu 39 298 -14 502 290 35 0 chr11 24930223 24930368 -123853104 + MLT1J2 LTR MaLR 31 180 -270 209 214 68 17 chr11 24930751 24930868 -123852604 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 23 33 0 0 chr11 24931283 24931313 -123852159 + AT_rich Low_complexity Low_complexity 1 30 0 2491 50 0 3 chr11 24931747 24932044 -123851428 - AluY SINE Alu -13 298 3 363 161 0 62 chr11 24932245 24932326 -123851146 + MADE1 DNA Mariner 1 76 -4 2205 128 8 35 chr11 24932326 24932700 -123850772 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr11 24932737 24932765 -123850707 + AT_rich Low_complexity Low_complexity 1 28 0 5324 206 32 27 chr11 24932938 24934266 -123849206 + L1MA5 LINE L1 3353 4687 -1459 * 5388 152 47 6 chr11 24934260 24935295 -123848177 + L1MA5 LINE L1 5157 6254 -46 1490 218 0 11 chr11 24935298 24935582 -123847890 + AluJo SINE Alu 1 281 -31 287 148 0 0 chr11 24935626 24935680 -123847792 + L1MA5 LINE L1 6245 6298 -2 617 291 81 0 chr11 24936127 24936337 -123847135 - MIR SINE MIR -6 256 30 773 363 65 34 chr11 24936421 24936989 -123846483 + MER115 DNA AcHobo 2 587 -106 27 29 0 0 chr11 24937780 24937814 -123845658 + AT_rich Low_complexity Low_complexity 1 34 0 331 321 0 51 chr11 24939888 24940025 -123843447 - MIR SINE MIR -6 256 127 250 337 121 6 chr11 24940082 24940248 -123843224 - L2 LINE L2 -10 3303 3119 1479 224 134 33 chr11 24940324 24940748 -123842724 + MLT2B1 LTR ERVL 3 469 -51 6186 100 9 3 chr11 24940907 24942417 -123841055 - L1PA10 LINE L1 -4 6164 4636 213 39 0 0 chr11 24942417 24942443 -123841029 + (TTG)n Simple_repeat Simple_repeat 2 27 0 772 204 0 7 chr11 24942445 24942597 -123840875 - AluJb SINE Alu -25 287 137 944 307 95 46 chr11 24943208 24943614 -123839858 - MLT1E2 LTR MaLR -7 619 142 22 0 0 0 chr11 24944339 24944361 -123839111 + AT_rich Low_complexity Low_complexity 1 22 0 1291 348 40 25 chr11 24944580 24945497 -123837975 - HERVL LTR ERVL -1253 4235 3302 518 286 62 58 chr11 24946432 24946740 -123836732 - LTR16A1 LTR ERVL -118 339 31 203 147 0 0 chr11 24946778 24946812 -123836660 + (TC)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 24946900 24946922 -123836550 + AT_rich Low_complexity Low_complexity 1 22 0 378 272 58 102 chr11 24947344 24947550 -123835922 + MER58C DNA MER1_type 2 198 -17 425 366 21 16 chr11 24947821 24948007 -123835465 - MER5A DNA MER1_type 0 189 3 379 247 75 75 chr11 24948094 24948268 -123835204 - L2 LINE L2 -23 3290 3117 206 171 24 0 chr11 24948345 24948386 -123835086 - L2 LINE L2 -614 2700 2659 1771 216 58 19 chr11 24948413 24948840 -123834632 + MLT1D LTR MaLR 62 505 0 1668 319 72 25 chr11 24948840 24949632 -123833840 - L2 LINE L2 -654 2660 1832 390 321 97 20 chr11 24949622 24949818 -123833654 + MIR SINE MIR 49 259 -3 * 1613 111 36 21 chr11 24950452 24950731 -123832741 - L1MA5A LINE L1 -1 6296 6014 247 188 0 0 chr11 24950882 24950930 -123832542 - L1PA15-16 LINE L1 -3931 2918 2871 1871 151 0 3 chr11 24951755 24952077 -123831395 - AluSx SINE Alu 0 321 1 311 136 17 0 chr11 24952196 24952255 -123831217 + (CA)n Simple_repeat Simple_repeat 2 61 0 1876 147 57 35 chr11 24952416 24952783 -123830689 + THE1C LTR MaLR 1 375 0 201 139 0 0 chr11 24952831 24952874 -123830598 + (CAA)n Simple_repeat Simple_repeat 2 44 0 731 240 17 11 chr11 24952949 24953128 -123830344 + MER20 DNA MER1_type 36 215 -4 355 349 120 5 chr11 24953509 24953701 -123829771 + LTR33 LTR ERVL 2 215 -306 180 77 0 0 chr11 24953881 24953907 -123829565 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2048 128 0 3 chr11 24954475 24954772 -123828700 - AluSg SINE Alu -14 296 1 759 267 234 16 chr11 24954772 24955218 -123828254 - Charlie1 DNA MER1_type -918 1843 5 328 355 94 0 chr11 24955503 24955641 -123827831 + L2 LINE L2 3103 3253 -19 241 374 25 74 chr11 24955751 24955954 -123827518 - MIR SINE MIR -14 248 56 228 241 0 0 chr11 24956172 24956230 -123827242 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 229 177 0 114 chr11 24956340 24956419 -123827053 + LTR66 LTR ERVL 367 436 -174 307 273 222 46 chr11 24957201 24957417 -123826055 + MER112 DNA MER1_type 4 257 -3 6551 13 0 0 chr11 24957621 24958370 -123825102 - L1PA2 LINE L1 -147 6008 5260 * 10226 24 0 0 chr11 24958365 24959572 -123823900 + L1PA2 LINE L1 4051 5257 -889 316 301 135 0 chr11 24961398 24961554 -123821918 + MIR SINE MIR 71 247 -15 2237 102 0 0 chr11 24961741 24962026 -123821446 - AluSg SINE Alu -11 299 15 224 213 16 0 chr11 24962282 24962343 -123821129 + (TA)n Simple_repeat Simple_repeat 2 63 0 300 102 0 0 chr11 24962358 24962407 -123821065 + (TG)n Simple_repeat Simple_repeat 2 50 0 1756 233 35 19 chr11 24962908 24963619 -123819853 + MER45B DNA AcHobo 37 797 -243 952 228 48 4 chr11 24963658 24963908 -123819564 + MER45B DNA AcHobo 780 1040 0 1048 315 28 59 chr11 24964732 24965307 -123818165 + LTR67 LTR ERVL 1 557 0 1256 241 82 15 chr11 24965893 24966234 -123817238 - MLT1A1 LTR MaLR -1 364 1 240 111 0 0 chr11 24967346 24967382 -123816090 + (A)n Simple_repeat Simple_repeat 1 36 0 2006 163 14 62 chr11 24968670 24969105 -123814367 - MLT2D LTR ERVL 0 414 1 244 342 86 26 chr11 24969306 24969423 -123814049 - L2 LINE L2 -5 3267 3144 277 318 138 11 chr11 24969858 24970047 -123813425 + MIR SINE MIR 13 225 -37 2148 132 0 3 chr11 24970336 24970647 -123812825 + AluSx SINE Alu 3 312 0 204 331 62 62 chr11 24971099 24971244 -123812228 - MIR3 SINE MIR -36 172 28 2596 33 3 0 chr11 24971688 24971994 -123811478 + AluY SINE Alu 1 307 -4 4045 160 10 26 chr11 24972483 24973251 -123810221 - L1PB4 LINE L1 -169 5987 5233 4852 195 27 21 chr11 24973267 24974362 -123809110 + L1MA9 LINE L1 5070 6171 -141 180 0 0 0 chr11 24974362 24974382 -123809090 + (CA)n Simple_repeat Simple_repeat 1 20 0 4852 195 27 21 chr11 24974382 24974524 -123808948 + L1MA9 LINE L1 6171 6311 -1 202 118 29 0 chr11 24974537 24974571 -123808901 + (CAA)n Simple_repeat Simple_repeat 2 36 0 207 318 12 35 chr11 24974991 24975076 -123808396 - L2 LINE L2 -24 3248 3166 2753 104 15 0 chr11 24975499 24975894 -123807578 + HSMAR1 DNA Mariner 3 403 -884 2643 201 38 61 chr11 24975896 24976738 -123806734 + LTR1 LTR ERV1 2 785 0 5531 123 21 25 chr11 24976738 24977628 -123805844 + HSMAR1 DNA Mariner 401 1287 0 247 326 47 16 chr11 24978261 24978390 -123805082 - MIR SINE MIR -7 255 123 601 291 73 8 chr11 24978514 24978761 -123804711 + L2 LINE L2 3050 3312 -1 285 360 20 0 chr11 24979236 24979336 -123804136 + L3 LINE CR1 915 1016 -561 195 195 0 0 chr11 24979398 24979439 -123804033 - L2 LINE L2 0 3313 3273 250 387 12 18 chr11 24981261 24981429 -123802043 + L2 LINE L2 2715 2881 -433 26 64 0 0 chr11 24981571 24981618 -123801854 + AT_rich Low_complexity Low_complexity 1 47 0 215 381 0 31 chr11 24981648 24981745 -123801727 - L2 LINE L2 -25 3247 3154 29 47 0 0 chr11 24983490 24983533 -123799939 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr11 24983935 24983959 -123799513 + (A)n Simple_repeat Simple_repeat 1 24 0 716 251 45 15 chr11 24984255 24984454 -123799018 - MLT1F LTR MaLR -268 274 70 359 184 118 26 chr11 24984467 24984543 -123798929 + THE1C LTR MaLR 1 83 -292 3965 120 100 125 chr11 24984579 24986025 -123797447 - pTR5 LTR ERV1 0 2438 744 1474 118 81 37 chr11 24986025 24986296 -123797176 + THE1C LTR MaLR 93 375 0 233 200 89 0 chr11 24986296 24986338 -123797134 - MLT1F LTR MaLR -494 48 3 600 317 56 27 chr11 24988212 24988696 -123794776 - MLT1G1 LTR MaLR 0 595 1 1216 266 46 48 chr11 24988936 24989372 -123794100 - MLT1D LTR MaLR -48 457 23 22 0 0 0 chr11 24989888 24989910 -123793562 + AT_rich Low_complexity Low_complexity 1 22 0 875 117 12 177 chr11 24990069 24990318 -123793154 - Tigger7 DNA MER2_type -69 2518 2311 1386 229 8 4 chr11 24990320 24990587 -123792885 - Tigger7 DNA MER2_type -465 268 1 1357 261 52 45 chr11 24991766 24992596 -123790876 + L1ME1 LINE L1 740 1577 -4503 610 258 42 21 chr11 24992596 24992883 -123790589 - L1ME1 LINE L1 -3909 3656 3364 927 257 14 4 chr11 24992883 24993163 -123790309 + L1ME1 LINE L1 3668 3950 -3615 1744 229 93 63 chr11 24993319 24994642 -123788830 + L1ME1 LINE L1 6216 7564 -21 270 319 143 45 chr11 24995765 24996163 -123787309 - MLT1K LTR MaLR -15 573 137 25 0 0 0 chr11 24996356 24996381 -123787091 + AT_rich Low_complexity Low_complexity 1 25 0 329 248 90 23 chr11 24996393 24996526 -123786946 + MIR SINE MIR 73 214 -48 427 183 15 99 chr11 24996541 24996672 -123786800 - FLAM_C SINE Alu -1 142 23 376 254 22 28 chr11 24997333 24997514 -123785958 + (TA)n Simple_repeat Simple_repeat 1 180 0 3135 119 73 9 chr11 24997598 24998129 -123785343 + MER34B LTR ERV1 1 565 0 207 0 0 0 chr11 24998418 24998441 -123785031 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr11 24998655 24998676 -123784796 + (T)n Simple_repeat Simple_repeat 1 21 0 1691 124 7 29 chr11 24998754 24999029 -123784443 + AluSx SINE Alu 36 304 -8 405 322 29 34 chr11 24999207 24999415 -123784057 + MIR SINE MIR 51 257 -5 224 275 29 29 chr11 25000410 25000479 -123782993 + MIR SINE MIR 82 150 -112 507 293 97 33 chr11 25000671 25001278 -123782194 - L1M4 LINE L1 -1063 5083 4438 22 56 0 0 chr11 25001464 25001500 -123781972 + AT_rich Low_complexity Low_complexity 1 36 0 2667 211 18 9 chr11 25001566 25002117 -123781355 - MER74A LTR ERVL 0 558 3 25 75 0 0 chr11 25002155 25002208 -123781264 + AT_rich Low_complexity Low_complexity 1 53 0 478 301 69 42 chr11 25002252 25002660 -123780812 - L1MC4a LINE L1 -1916 5892 5474 348 332 74 5 chr11 25002730 25002920 -123780552 - L1MC4a LINE L1 -2399 3747 3545 1843 113 3 31 chr11 25003416 25003708 -123779764 - AluSx SINE Alu 0 312 29 301 356 0 0 chr11 25005506 25005610 -123777862 - MIR3 SINE MIR -24 184 81 274 200 0 0 chr11 25005981 25006031 -123777441 + Alu SINE Alu 244 293 -8 427 242 0 0 chr11 25006038 25006129 -123777343 - MER67D LTR ERV1 -417 97 7 2756 198 46 132 chr11 25006870 25007842 -123775630 - MER21A LTR ERV1 -7 924 36 857 178 53 0 chr11 25007871 25008040 -123775432 + HSMAR2 DNA Mariner 1 178 -1124 708 80 7 11 chr11 25008040 25008147 -123775325 - THE1B LTR MaLR 0 364 264 * 1189 166 5 5 chr11 25008144 25008349 -123775123 + HSMAR2 DNA Mariner 617 821 -481 * 1251 202 8 12 chr11 25008344 25008602 -123774870 - THE1A LTR MaLR -98 257 1 1589 161 11 4 chr11 25008618 25008892 -123774580 + HSMAR2 DNA Mariner 181 456 -846 * 3879 149 41 18 chr11 25008885 25009609 -123773863 + HSMAR2 DNA Mariner 562 1302 0 384 314 76 8 chr11 25010295 25010649 -123772823 - L1M4 LINE L1 -1715 4431 4054 428 218 10 102 chr11 25010799 25010996 -123772476 - L1ME3A LINE L1 -87 6477 6299 54 16 0 0 chr11 25011009 25011070 -123772402 + AT_rich Low_complexity Low_complexity 1 61 0 694 283 52 0 chr11 25011070 25011339 -123772133 - L1ME3A LINE L1 -243 6321 6039 957 191 0 6 chr11 25011339 25011512 -123771960 - AluJb SINE Alu -1 311 140 590 281 11 11 chr11 25011521 25011697 -123771775 - L1ME3A LINE L1 -472 6043 5856 21 57 0 0 chr11 25011927 25011962 -123771510 + AT_rich Low_complexity Low_complexity 1 35 0 2046 101 0 28 chr11 25012051 25012339 -123771133 - AluSc SINE Alu -21 288 9 744 290 87 48 chr11 25012349 25012887 -123770585 - L1ME3A LINE L1 -2991 3549 2991 1596 173 54 38 chr11 25012945 25013314 -123770158 + THE1C LTR MaLR 1 375 0 8927 151 27 32 chr11 25013318 25014898 -123768574 + MSTA-int LTR MaLR 5 1575 -5 1624 161 180 14 chr11 25014903 25015270 -123768202 + MSTA LTR MaLR 1 428 0 301 322 0 50 chr11 25015271 25015392 -123768080 - L1ME3A LINE L1 -5434 1096 982 34 24 0 0 chr11 25015483 25015524 -123767948 + AT_rich Low_complexity Low_complexity 1 41 0 1801 256 35 31 chr11 25015544 25015834 -123767638 - MLT1F1 LTR MaLR -84 483 189 7986 52 11 0 chr11 25015834 25016790 -123766682 + LTR5 LTR ERVK 1 966 -3 1801 256 35 31 chr11 25016790 25016980 -123766492 - MLT1F1 LTR MaLR -378 189 1 661 333 74 20 chr11 25017053 25017446 -123766026 - L1ME3A LINE L1 -5650 880 467 316 291 69 44 chr11 25019008 25019211 -123764261 + L2 LINE L2 3106 3313 0 193 304 36 0 chr11 25019707 25019763 -123763709 + MIR SINE MIR 204 261 -1 11266 45 2 0 chr11 25019865 25021273 -123762199 - L1PA5 LINE L1 -1745 4401 2991 7535 52 5 0 chr11 25021273 25022996 -123760476 + L1PA5 LINE L1 4425 6153 -1 248 371 11 34 chr11 25023009 25023184 -123760288 + MIR SINE MIR 86 256 -6 185 273 42 91 chr11 25023237 25023380 -123760092 + MIR SINE MIR 80 215 -47 1994 125 0 26 chr11 25024039 25024342 -123759130 - AluSx SINE Alu -17 295 1 199 300 29 14 chr11 25024647 25024717 -123758755 + L2 LINE L2 2907 2977 -337 3470 243 36 48 chr11 25024893 25025651 -123757821 - L1MD1 LINE L1 -1 6241 5475 718 82 20 0 chr11 25025651 25025749 -123757723 + HY3 scRNA scRNA 1 100 -1 3470 243 36 48 chr11 25025749 25026805 -123756667 - L1MD1 LINE L1 -767 5475 4454 1518 230 99 2 chr11 25026891 25027357 -123756115 + L1MDa LINE L1 1712 2222 -4318 1045 241 108 0 chr11 25027443 25027721 -123755751 - L1ME3A LINE L1 -6181 359 52 2425 111 75 8 chr11 25029952 25030341 -123753131 - MSTA LTR MaLR -11 417 3 1291 225 15 89 chr11 25030531 25030935 -123752537 - MLT1A2 LTR MaLR 0 374 1 1327 252 53 86 chr11 25031290 25031910 -123751562 - LTR9 LTR ERV1 -12 600 1 687 256 126 8 chr11 25032246 25032484 -123750988 - AluSg SINE Alu -44 266 1 318 254 155 14 chr11 25033077 25033163 -123750309 - MLT1J LTR MaLR -349 162 89 207 0 0 0 chr11 25033163 25033186 -123750286 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 318 254 155 14 chr11 25033186 25033241 -123750231 - MLT1J LTR MaLR -422 89 1 286 241 0 0 chr11 25034674 25034732 -123748740 - L2 LINE L2 0 3313 3256 23 0 0 0 chr11 25034910 25034933 -123748539 + AT_rich Low_complexity Low_complexity 1 23 0 198 200 0 0 chr11 25035372 25035407 -123748065 - L2 LINE L2 -556 2758 2724 1747 149 40 66 chr11 25036594 25036989 -123746483 - L1MA9 LINE L1 -12 6300 5916 1160 259 11 125 chr11 25037100 25037794 -123745678 - L1PA10 LINE L1 -255 5913 5299 9456 219 32 32 chr11 25037804 25037825 -123745647 - L1MA9 LINE L1 -961 5185 5166 219 36 0 0 chr11 25037825 25037853 -123745619 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9456 219 32 32 chr11 25037853 25040452 -123743020 - L1MA9 LINE L1 -980 5166 2563 477 172 9 60 chr11 25040478 25040594 -123742878 - FLAM_C SINE Alu -8 135 26 372 377 15 25 chr11 25041016 25041215 -123742257 + MIR3 SINE MIR 8 204 -4 180 338 38 12 chr11 25041874 25041954 -123741518 + MIR SINE MIR 42 123 -85 28 0 0 0 chr11 25041967 25041995 -123741477 + AT_rich Low_complexity Low_complexity 1 28 0 216 414 69 13 chr11 25043001 25043233 -123740239 - L2 LINE L2 -219 3053 2809 877 278 50 90 chr11 25043493 25043746 -123739726 + LTR16A LTR ERVL 21 283 -167 2099 192 29 7 chr11 25043746 25044163 -123739309 - MSTB LTR MaLR 0 426 1 8093 193 13 26 chr11 25044172 25045841 -123737631 - MSTB-int LTR MaLR -3 1648 1 2219 135 57 50 chr11 25045841 25046092 -123737380 - MSTB LTR MaLR 0 426 169 1745 153 49 0 chr11 25046092 25046401 -123737071 + AluSx SINE Alu 1 312 0 2219 135 57 50 chr11 25046401 25046572 -123736900 - MSTB LTR MaLR -257 169 1 877 278 50 90 chr11 25046572 25046728 -123736744 + LTR16A LTR ERVL 289 424 -26 588 283 66 20 chr11 25047768 25047966 -123735506 - MIR SINE MIR -50 212 6 486 0 0 0 chr11 25048407 25048461 -123735011 + (CA)n Simple_repeat Simple_repeat 1 54 0 274 261 92 39 chr11 25048854 25048984 -123734488 - MIR SINE MIR -101 161 25 683 335 44 24 chr11 25049066 25049496 -123733976 - LTR16A LTR ERVL -9 448 2 317 366 23 0 chr11 25049503 25049634 -123733838 - MIR SINE MIR -10 252 119 329 335 47 28 chr11 25051404 25051619 -123731853 - MLT1K LTR MaLR -368 220 2 263 167 15 0 chr11 25051654 25051720 -123731752 + (TA)n Simple_repeat Simple_repeat 1 67 0 743 199 54 18 chr11 25051926 25052092 -123731380 - FAM SINE Alu 0 175 4 257 235 259 0 chr11 25052707 25052792 -123730680 - MIR SINE MIR -8 254 148 488 309 75 53 chr11 25053102 25053422 -123730050 + MER68 LTR ERV1 236 562 0 1612 275 130 30 chr11 25053847 25054768 -123728704 - L1MDa LINE L1 -2658 3724 2897 4250 91 17 9 chr11 25054768 25055409 -123728063 - L1MA1 LINE L1 0 6302 5657 1612 275 130 30 chr11 25055409 25055828 -123727644 - L1MDa LINE L1 -3485 2897 2521 180 0 0 0 chr11 25055828 25055848 -123727624 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1612 275 130 30 chr11 25055848 25056428 -123727044 - L1MDa LINE L1 -3861 2521 1496 1706 39 5 0 chr11 25056439 25056645 -123726827 - L1P2 LINE L1 -1884 4262 4056 * 9064 34 11 1 chr11 25056642 25058169 -123725303 + L1P2 LINE L1 4269 5808 -347 6852 38 36 0 chr11 25058269 25059222 -123724250 + L1PA4 LINE L1 5171 6154 -1 317 292 83 49 chr11 25059224 25059655 -123723817 - L1MDa LINE L1 -4814 1568 1123 330 324 89 33 chr11 25059660 25059873 -123723599 - L1MDa LINE L1 -5472 1091 867 359 374 46 27 chr11 25060161 25060380 -123723092 - L1MDa LINE L1 -5931 632 410 259 71 0 24 chr11 25061075 25061117 -123722355 + L1MB8 LINE L1 5919 5959 -219 1378 167 56 0 chr11 25061422 25061692 -123721780 - L1MA4 LINE L1 -340 5960 5676 1657 176 0 0 chr11 25061696 25061998 -123721474 + L1MA4 LINE L1 5999 6300 0 22 35 0 0 chr11 25062389 25062418 -123721054 + AT_rich Low_complexity Low_complexity 1 29 0 187 315 169 42 chr11 25062862 25063342 -123720130 - L2 LINE L2 -738 2576 2036 3524 233 44 19 chr11 25063343 25064624 -123718848 + L1MB7 LINE L1 4875 6183 -1 428 290 32 38 chr11 25065327 25065513 -123717959 + MIR SINE MIR 23 207 -55 246 219 133 38 chr11 25066325 25066430 -123717042 + MIR SINE MIR 120 234 -28 210 37 0 0 chr11 25066466 25066493 -123716979 + (TC)n Simple_repeat Simple_repeat 2 28 0 345 24 0 0 chr11 25066493 25066535 -123716937 + (CA)n Simple_repeat Simple_repeat 1 42 0 345 306 82 55 chr11 25072436 25072619 -123710853 + MIR SINE MIR 67 254 -8 26 0 0 0 chr11 25072637 25072663 -123710809 + AT_rich Low_complexity Low_complexity 1 26 0 1868 127 3 14 chr11 25072847 25073154 -123710318 - AluSg1 SINE Alu 0 304 1 349 219 195 16 chr11 25074108 25074231 -123709241 - MIR3 SINE MIR -49 159 15 294 319 118 7 chr11 25074913 25075057 -123708415 + MIR SINE MIR 74 233 -29 28 29 0 0 chr11 25075168 25075203 -123708269 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr11 25075240 25075266 -123708206 + AT_rich Low_complexity Low_complexity 1 26 0 228 280 97 21 chr11 25075904 25075997 -123707475 + MIR SINE MIR 150 249 -13 21 95 0 0 chr11 25076374 25076437 -123707035 + AT_rich Low_complexity Low_complexity 1 63 0 234 323 32 11 chr11 25077584 25077677 -123705795 + MER5A DNA MER1_type 7 101 -88 40 0 0 0 chr11 25078436 25078476 -123704996 + AT_rich Low_complexity Low_complexity 1 40 0 596 309 51 6 chr11 25078514 25078692 -123704780 - MIR SINE MIR -75 187 2 27 0 0 0 chr11 25079152 25079179 -123704293 + AT_rich Low_complexity Low_complexity 1 27 0 263 371 113 10 chr11 25079179 25079373 -123704099 - MIR SINE MIR 0 262 49 242 99 50 58 chr11 25079898 25080019 -123703453 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 35 0 0 chr11 25080152 25080181 -123703291 + AT_rich Low_complexity Low_complexity 1 29 0 207 232 146 12 chr11 25080464 25080546 -123702926 - MIR SINE MIR -46 216 124 657 212 116 83 chr11 25080905 25081060 -123702412 - MLT1J LTR MaLR -3 508 360 522 189 89 125 chr11 25081060 25081341 -123702131 + ORSL DNA AcHobo 5 275 0 657 212 116 83 chr11 25081341 25081487 -123701985 - MLT1J LTR MaLR -151 360 197 400 268 165 0 chr11 25081690 25081817 -123701655 + MER6B DNA MER2_type 2 149 -61 35 0 0 0 chr11 25081857 25081892 -123701580 + AT_rich Low_complexity Low_complexity 1 35 0 282 350 80 0 chr11 25082747 25082884 -123700588 - MIR3 SINE MIR -2 206 59 2230 95 0 25 chr11 25083210 25083525 -123699947 - AluSx SINE Alu -4 308 2 22 0 0 0 chr11 25083670 25083692 -123699780 + AT_rich Low_complexity Low_complexity 1 22 0 186 327 0 0 chr11 25085884 25085939 -123697533 - L2 LINE L2 -4 3268 3214 587 270 91 20 chr11 25086233 25086485 -123696987 + LTR16A1 LTR ERVL 188 457 0 346 302 47 30 chr11 25086485 25086654 -123696818 + MIR SINE MIR 36 207 -55 3391 113 69 26 chr11 25086786 25087395 -123696077 - LTR24C LTR ERV1 0 635 1 2500 58 0 3 chr11 25087672 25087981 -123695491 + AluY SINE Alu 1 308 -3 28 86 0 0 chr11 25087992 25088062 -123695410 + AT_rich Low_complexity Low_complexity 1 70 0 193 423 10 10 chr11 25088689 25088793 -123694679 - MIR SINE MIR -140 122 19 2337 158 49 7 chr11 25089179 25089627 -123693845 - MER101 LTR ERV1 0 474 8 602 126 0 0 chr11 25091255 25091342 -123692130 - MER70B LTR ERVL -2 576 490 2214 127 0 0 chr11 25091537 25091837 -123691635 + AluSx SINE Alu 1 300 -12 180 125 0 0 chr11 25092798 25092830 -123690642 + (T)n Simple_repeat Simple_repeat 1 32 0 22 70 0 0 chr11 25093749 25093792 -123689680 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr11 25094003 25094042 -123689430 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr11 25094664 25094688 -123688784 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 25097847 25097869 -123685603 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr11 25098036 25098068 -123685404 + (CA)n Simple_repeat Simple_repeat 1 32 0 266 256 83 33 chr11 25098724 25098845 -123684627 + MER103 DNA DNA 23 149 -17 628 39 0 0 chr11 25098978 25099056 -123684416 - L1PA4 LINE L1 -3 6152 6075 309 305 47 47 chr11 25099569 25099759 -123683713 + L2 LINE L2 3124 3313 0 277 344 120 50 chr11 25100120 25100661 -123682811 + L2 LINE L2 1699 2277 -1037 234 0 0 0 chr11 25100683 25100709 -123682763 + (TTA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr11 25100910 25100946 -123682526 + AT_rich Low_complexity Low_complexity 1 36 0 2048 178 31 2 chr11 25100946 25101361 -123682111 - L1MA5 LINE L1 -6 6294 5868 451 305 170 27 chr11 25101370 25101629 -123681843 + L2 LINE L2 2298 2593 -721 520 273 130 60 chr11 25101652 25102099 -123681373 - L1MC5 LINE L1 -32 7929 7452 207 218 0 0 chr11 25103888 25103943 -123679529 + (TA)n Simple_repeat Simple_repeat 2 56 0 212 266 16 38 chr11 25103999 25104183 -123679289 + (TA)n Simple_repeat Simple_repeat 1 180 0 12875 165 25 18 chr11 25104583 25106982 -123676490 - Tigger1 DNA MER2_type -1 2417 1 719 229 48 0 chr11 25107886 25108074 -123675398 + L1MC4a LINE L1 4920 5116 -1030 363 206 305 0 chr11 25108075 25108206 -123675266 + L1MB7 LINE L1 6005 6175 -9 206 268 18 0 chr11 25108258 25108314 -123675158 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 303 351 109 14 chr11 25108314 25108599 -123674873 + L1MC4a LINE L1 5597 5908 -1900 22 0 0 0 chr11 25108753 25108775 -123674697 + AT_rich Low_complexity Low_complexity 1 22 0 303 326 16 0 chr11 25108936 25109065 -123674407 - MER94 DNA DNA -3 131 1 223 284 0 30 chr11 25109478 25109545 -123673927 + MIR SINE MIR 192 256 -6 1533 221 0 49 chr11 25109900 25110289 -123673183 + MLT1A2 LTR MaLR 1 370 -4 2287 111 0 0 chr11 25110615 25110922 -123672550 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr11 25112856 25112878 -123670594 + AT_rich Low_complexity Low_complexity 1 22 0 2026 119 0 4 chr11 25113212 25113490 -123669982 + AluSx SINE Alu 30 306 -6 1593 200 13 13 chr11 25113602 25113917 -123669555 - LTR38 LTR ERV1 0 556 242 9749 165 26 21 chr11 25113936 25116552 -123666920 - L1PA13 LINE L1 -13 6150 3549 234 0 0 0 chr11 25116552 25116578 -123666894 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9749 165 26 21 chr11 25116578 25116608 -123666864 - L1PA13 LINE L1 -2614 3549 3521 306 0 0 0 chr11 25116608 25116642 -123666830 + (TGG)n Simple_repeat Simple_repeat 1 34 0 9749 165 26 21 chr11 25116642 25116823 -123666649 - L1PA13 LINE L1 -2642 3521 3322 5199 172 28 10 chr11 25116823 25118365 -123665107 + L1PA15 LINE L1 4606 6161 -4 4177 183 30 8 chr11 25118579 25119412 -123664060 - Tigger3b DNA MER2_type -379 852 2 219 351 27 54 chr11 25120168 25120353 -123663119 - L3 LINE CR1 -135 1442 1263 867 185 0 25 chr11 25120438 25120600 -123662872 + FRAM SINE Alu 2 159 -17 1426 204 35 32 chr11 25120862 25121265 -123662207 + L1MB8 LINE L1 5774 6177 -1 276 255 0 11 chr11 25121924 25122018 -123661454 + L1M4 LINE L1 3909 4001 -2145 277 296 113 12 chr11 25122153 25122393 -123661079 + L1M4 LINE L1 4182 4445 -1701 38 75 0 0 chr11 25122543 25122623 -123660849 + AT_rich Low_complexity Low_complexity 1 80 0 195 167 0 0 chr11 25122775 25122817 -123660655 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr11 25123423 25123453 -123660019 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 25124338 25124360 -123659112 + AT_rich Low_complexity Low_complexity 1 22 0 391 333 99 39 chr11 25124455 25124891 -123658581 + L3 LINE CR1 823 1284 -293 273 304 112 0 chr11 25124893 25125018 -123658454 + MIR SINE MIR 124 262 0 1803 152 7 14 chr11 25125338 25125634 -123657838 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 25127353 25127383 -123656089 + AT_rich Low_complexity Low_complexity 1 30 0 285 261 14 0 chr11 25127426 25127495 -123655977 + MLT2B3 LTR ERVL 1 70 -484 2265 206 16 56 chr11 25127593 25128092 -123655380 + MLT2B3 LTR ERVL 76 554 0 1032 216 33 118 chr11 25128226 25128624 -123654848 + MLT1A1 LTR MaLR 1 364 -1 1202 82 0 12 chr11 25129584 25129754 -123653718 + L1PA7 LINE L1 5959 6126 -28 277 309 41 0 chr11 25130199 25130296 -123653176 - MER5B DNA MER1_type -9 169 69 195 318 157 37 chr11 25130393 25130610 -123652862 - L2 LINE L2 -683 2631 2389 346 336 47 23 chr11 25130730 25130858 -123652614 - L2 LINE L2 -8 3264 3134 34 0 0 0 chr11 25130998 25131032 -123652440 + AT_rich Low_complexity Low_complexity 1 34 0 2347 72 0 25 chr11 25131141 25131487 -123651985 + L1PA7 LINE L1 5824 6161 0 32 0 0 0 chr11 25131815 25131847 -123651625 + AT_rich Low_complexity Low_complexity 1 32 0 2304 77 0 29 chr11 25132217 25132529 -123650943 + AluY SINE Alu 1 303 -8 185 327 88 26 chr11 25133005 25133118 -123650354 - L2 LINE L2 -4 3309 3190 192 275 66 33 chr11 25133562 25133653 -123649819 - MIR3 SINE MIR -28 180 87 768 234 8 51 chr11 25135670 25135926 -123647546 + L1M4b LINE L1 1358 1602 -5257 25 0 0 0 chr11 25135933 25135958 -123647514 + AT_rich Low_complexity Low_complexity 1 25 0 1263 117 6 0 chr11 25135964 25136144 -123647328 - AluSc SINE Alu 0 309 129 198 103 0 0 chr11 25136148 25136177 -123647295 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 278 0 0 chr11 25136179 25136269 -123647203 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr11 25136269 25136292 -123647180 + (CA)n Simple_repeat Simple_repeat 2 24 0 353 261 11 0 chr11 25136425 25136513 -123646959 + L1MC4 LINE L1 6614 6702 -1340 934 114 0 0 chr11 25136536 25136659 -123646813 - AluSc SINE Alu -186 123 1 1737 273 46 30 chr11 25136686 25137445 -123646027 + L1M4b LINE L1 1623 2393 -4566 894 239 71 34 chr11 25137493 25137666 -123645806 + L1M4b LINE L1 2950 3115 -3842 1502 137 26 0 chr11 25137666 25137892 -123645580 + AluSg/x SINE Alu 69 300 -10 894 239 71 34 chr11 25137892 25138084 -123645388 + L1M4b LINE L1 3115 3325 -3632 24 0 0 0 chr11 25138145 25138169 -123645303 + AT_rich Low_complexity Low_complexity 1 24 0 384 255 32 0 chr11 25138941 25139035 -123644437 - MER5A DNA MER1_type -83 106 10 30 27 0 0 chr11 25139365 25139402 -123644070 + AT_rich Low_complexity Low_complexity 1 37 0 180 216 0 0 chr11 25140081 25140118 -123643354 + L3 LINE CR1 1114 1150 -427 275 303 34 3 chr11 25140339 25140434 -123643038 - MIR SINE MIR -64 144 75 * 367 382 50 28 chr11 25140429 25140788 -123642684 + L3 LINE CR1 1208 1574 -3 21 71 0 0 chr11 25141759 25141801 -123641671 + AT_rich Low_complexity Low_complexity 1 42 0 245 281 164 20 chr11 25142849 25142995 -123640477 + MIR SINE MIR 47 213 -49 23 0 0 0 chr11 25143377 25143400 -123640072 + AT_rich Low_complexity Low_complexity 1 23 0 1138 29 0 0 chr11 25143400 25143536 -123639936 - L1PA4 LINE L1 -3 6152 6017 1111 35 18 29 chr11 25143568 25143652 -123639820 + (TTTC)n Simple_repeat Simple_repeat 1 252 0 1111 35 18 29 chr11 25143652 25143823 -123639649 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 200 255 0 0 chr11 25143931 25143982 -123639490 + (TG)n Simple_repeat Simple_repeat 1 51 0 1639 191 112 56 chr11 25144039 25144522 -123638950 - MER67D LTR ERV1 -4 510 1 215 154 26 0 chr11 25144705 25144744 -123638728 + GA-rich Low_complexity Low_complexity 4 43 0 255 321 128 20 chr11 25145107 25145303 -123638169 - MIR SINE MIR -37 225 9 2263 110 0 7 chr11 25145651 25145961 -123637511 + AluSg SINE Alu 3 310 0 26 50 0 0 chr11 25146418 25146458 -123637014 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 25146831 25146853 -123636619 + AT_rich Low_complexity Low_complexity 1 22 0 268 292 0 95 chr11 25147184 25147321 -123636151 - MIR SINE MIR -28 234 111 363 306 35 29 chr11 25147374 25147547 -123635925 - MLT1J LTR MaLR -21 490 317 2454 137 57 26 chr11 25147992 25148452 -123635020 + L1PA16 LINE L1 5682 6155 -11 1687 175 0 0 chr11 25150907 25151234 -123632238 + AluSx SINE Alu 1 327 0 380 328 59 46 chr11 25151256 25151494 -123631978 - MIR SINE MIR -8 254 14 234 0 0 0 chr11 25151818 25151844 -123631628 + (T)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr11 25152259 25152287 -123631185 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 244 218 36 36 chr11 25152639 25152749 -123630723 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 2224 75 0 30 chr11 25153225 25153530 -123629942 - AluY SINE Alu -15 296 1 188 252 97 68 chr11 25153572 25153675 -123629797 - L2 LINE L2 -1 3312 3207 189 280 144 16 chr11 25153865 25153990 -123629482 - L3b LINE CR1 -173 1410 1270 221 356 59 0 chr11 25154433 25154534 -123628938 - MIR SINE MIR -31 231 125 21 0 0 0 chr11 25156517 25156538 -123626934 + AT_rich Low_complexity Low_complexity 1 21 0 312 369 36 0 chr11 25157182 25157293 -123626179 - L2 LINE L2 -8 3264 3150 245 286 20 0 chr11 25157568 25157666 -123625806 + T-rich Low_complexity Low_complexity 3 102 0 22 0 0 0 chr11 25158168 25158190 -123625282 + AT_rich Low_complexity Low_complexity 1 22 0 292 279 152 19 chr11 25158204 25158362 -123625110 - MIR SINE MIR 0 262 84 183 254 16 32 chr11 25158828 25158891 -123624581 + MIR SINE MIR 155 216 -46 255 214 83 24 chr11 25158900 25158984 -123624488 + MIR3 SINE MIR 119 207 -1 801 208 0 11 chr11 25159793 25159971 -123623501 - L1MA6 LINE L1 -1 6299 6124 724 204 13 13 chr11 25160483 25160635 -123622837 + FRAM SINE Alu 1 152 -24 287 328 22 0 chr11 25161146 25161275 -123622197 + MIR SINE MIR 45 180 -28 22 56 0 0 chr11 25161339 25161375 -123622097 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 25162860 25162883 -123620589 + AT_rich Low_complexity Low_complexity 1 23 0 863 255 99 57 chr11 25162971 25163050 -123620422 - MLT1G1 LTR MaLR -205 390 316 353 303 9 0 chr11 25163050 25163159 -123620313 - MER81 DNA DNA -2 112 3 863 255 99 57 chr11 25163159 25163451 -123620021 - MLT1G1 LTR MaLR -279 316 3 205 330 66 11 chr11 25163465 25163556 -123619916 + L2 LINE L2 3199 3294 -19 202 364 30 10 chr11 25164365 25164464 -123619008 + L2 LINE L2 1459 1559 -1755 1851 307 50 38 chr11 25164588 25165536 -123617936 + L2 LINE L2 1807 2832 -482 384 253 20 0 chr11 25166429 25166579 -123616893 + (CA)n Simple_repeat Simple_repeat 2 154 0 1754 183 54 6 chr11 25166596 25166945 -123616527 - MLT2D LTR ERVL -48 366 1 212 288 0 61 chr11 25167647 25167713 -123615759 - MIR SINE MIR -113 149 88 450 75 0 0 chr11 25168581 25168648 -123614824 + (TG)n Simple_repeat Simple_repeat 2 68 0 564 100 0 0 chr11 25169690 25169770 -123613702 + MADE1 DNA Mariner 1 80 0 217 317 49 41 chr11 25171295 25171418 -123612054 - L2 LINE L2 -290 2982 2859 23 33 0 0 chr11 25171569 25171599 -123611873 + AT_rich Low_complexity Low_complexity 1 30 0 327 338 60 48 chr11 25171787 25172101 -123611371 + MLT1L LTR MaLR 210 527 -88 341 355 101 5 chr11 25172317 25172534 -123610938 - MIR SINE MIR -6 256 19 216 0 0 0 chr11 25172639 25172663 -123610809 + (CA)n Simple_repeat Simple_repeat 2 25 0 183 156 0 0 chr11 25173204 25173236 -123610236 + CT-rich Low_complexity Low_complexity 64 95 0 2049 128 3 7 chr11 25177015 25177312 -123606160 + AluSx SINE Alu 3 298 -14 182 172 0 0 chr11 25177317 25177346 -123606126 - L2 LINE L2 -15 3257 3229 1118 185 164 91 chr11 25179201 25179371 -123604101 + MLT1C LTR MaLR 20 176 -291 420 20 0 0 chr11 25179371 25179420 -123604052 + (CA)n Simple_repeat Simple_repeat 2 50 0 1118 185 164 91 chr11 25179420 25179665 -123603807 + MLT1C LTR MaLR 176 465 -2 455 250 78 88 chr11 25180085 25180321 -123603151 + MLT1E2 LTR MaLR 54 254 -372 285 197 0 0 chr11 25180434 25180495 -123602977 + (TA)n Simple_repeat Simple_repeat 1 61 0 312 170 0 100 chr11 25180502 25180602 -123602870 - L1MC4 LINE L1 -1339 6703 6614 276 30 0 0 chr11 25180602 25180635 -123602837 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 25180907 25180928 -123602544 + AT_rich Low_complexity Low_complexity 1 21 0 273 365 26 0 chr11 25182514 25182629 -123600843 - L2 LINE L2 0 3272 3155 27 0 0 0 chr11 25182648 25182675 -123600797 + AT_rich Low_complexity Low_complexity 1 27 0 379 328 16 0 chr11 25182798 25182920 -123600552 + MIR SINE MIR 8 131 -131 25 0 0 0 chr11 25183761 25183786 -123599686 + AT_rich Low_complexity Low_complexity 1 25 0 1549 222 49 2 chr11 25183815 25184292 -123599180 - L1MA9 LINE L1 -2 6310 5782 255 173 0 0 chr11 25184294 25184346 -123599126 + (TA)n Simple_repeat Simple_repeat 1 52 0 540 226 0 0 chr11 25184400 25184493 -123598979 + Tigger5 DNA MER2_type 2 94 -2229 914 155 126 0 chr11 25184510 25184684 -123598788 + Tigger5 DNA MER2_type 2123 2318 -5 2211 226 29 27 chr11 25184739 25185753 -123597719 - L1MA9 LINE L1 -538 5774 4758 2934 267 52 42 chr11 25186369 25186761 -123596711 + L1M4b LINE L1 425 811 -6048 2178 115 3 13 chr11 25186761 25187075 -123596397 + AluSx SINE Alu 1 311 -1 2934 267 52 42 chr11 25187075 25187739 -123595733 + L1M4b LINE L1 811 1492 -5367 1589 162 4 0 chr11 25187987 25188240 -123595232 + AluSx SINE Alu 8 261 -51 256 64 43 0 chr11 25188368 25188415 -123595057 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 201 348 170 9 chr11 25188489 25188601 -123594871 - L2 LINE L2 -2 3270 3141 190 301 60 0 chr11 25188627 25188710 -123594762 - MIR SINE MIR -41 221 134 221 56 0 28 chr11 25188941 25188977 -123594495 + (CAT)n Simple_repeat Simple_repeat 3 37 0 316 253 58 58 chr11 25188982 25189136 -123594336 - MIR SINE MIR -12 250 97 340 336 138 23 chr11 25189306 25189660 -123593812 - L2 LINE L2 -601 2713 2319 512 357 119 31 chr11 25191489 25192255 -123591217 + L2 LINE L2 2431 3279 -34 3656 211 40 63 chr11 25192407 25193719 -123589753 - L1MD1 LINE L1 -3 6633 5360 292 119 34 0 chr11 25193764 25193823 -123589649 + (TG)n Simple_repeat Simple_repeat 2 62 0 1023 276 47 3 chr11 25193828 25194208 -123589264 - L1MD1 LINE L1 -1201 5339 4943 572 292 29 5 chr11 25194211 25194420 -123589052 - L1MD1 LINE L1 -3393 3147 2934 3971 237 115 49 chr11 25194452 25194855 -123588617 - L1MD1 LINE L1 -5052 1488 1113 1800 143 3 20 chr11 25194855 25195148 -123588324 + AluSx SINE Alu 1 288 -24 3971 237 115 49 chr11 25195148 25195167 -123588305 - L1MD1 LINE L1 -5427 1113 1097 194 0 0 37 chr11 25195167 25195194 -123588278 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3971 237 115 49 chr11 25195194 25196148 -123587324 - L1MD1 LINE L1 -5443 1097 21 1539 199 4 18 chr11 25196322 25196645 -123586827 - AluJo SINE Alu 0 324 6 1536 194 71 9 chr11 25196916 25197240 -123586232 + MER2 DNA MER2_type 1 344 0 765 213 171 4 chr11 25199290 25199450 -123584022 - AluJb SINE Alu -33 279 147 2031 70 17 17 chr11 25199450 25199749 -123583723 - L1PA3 LINE L1 -5 6150 5852 765 213 171 4 chr11 25199749 25199827 -123583645 - AluJb SINE Alu -165 147 1 362 302 7 47 chr11 25199931 25200080 -123583392 + MIR SINE MIR 49 183 -72 2060 114 0 10 chr11 25200881 25201178 -123582294 + AluSx SINE Alu 2 295 -17 252 289 96 10 chr11 25201380 25201484 -123581988 - MIR SINE MIR -75 187 75 195 146 0 0 chr11 25202195 25202236 -123581236 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1545 194 17 31 chr11 25202375 25202726 -123580746 + L1MA9 LINE L1 5819 6164 -148 201 39 0 0 chr11 25202739 25202765 -123580707 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 608 129 68 27 chr11 25202787 25202934 -123580538 + L1MA9 LINE L1 6159 6311 -1 324 287 132 7 chr11 25203375 25203511 -123579961 + MIR SINE MIR 67 219 -43 354 143 0 0 chr11 25205542 25205605 -123577867 + (CA)n Simple_repeat Simple_repeat 1 63 0 1979 146 7 0 chr11 25205920 25206229 -123577243 - AluSx SINE Alu -1 311 1 1587 214 28 3 chr11 25206458 25206822 -123576650 - L1PB4 LINE L1 -2 6154 5782 227 113 97 0 chr11 25206829 25206891 -123576581 + (TA)n Simple_repeat Simple_repeat 1 68 0 1672 146 2 11 chr11 25206891 25207180 -123576292 - L1ME LINE L1 -345 5817 5542 6979 215 36 30 chr11 25207287 25209122 -123574350 - L1PB4 LINE L1 -852 5294 3449 21 36 0 0 chr11 25211135 25211163 -123572309 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr11 25211174 25211200 -123572272 + (TG)n Simple_repeat Simple_repeat 2 27 0 385 278 52 9 chr11 25211266 25211381 -123572091 + MIR SINE MIR 20 139 -123 908 169 0 0 chr11 25212269 25212429 -123571043 + L1PB4 LINE L1 5997 6156 0 180 0 0 0 chr11 25212656 25212676 -123570796 + (TG)n Simple_repeat Simple_repeat 2 21 0 538 269 149 25 chr11 25213610 25213811 -123569661 + MIR SINE MIR 5 230 -32 31 26 0 0 chr11 25214176 25214214 -123569258 + AT_rich Low_complexity Low_complexity 1 38 0 3706 177 57 32 chr11 25214396 25215355 -123568117 + MER11C LTR ERVK 1 1071 0 22 0 0 0 chr11 25215564 25215586 -123567886 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr11 25215950 25215976 -123567496 + AT_rich Low_complexity Low_complexity 1 26 0 2183 109 3 0 chr11 25216681 25216985 -123566487 - AluSq SINE Alu -8 305 1 994 223 103 4 chr11 25217249 25217522 -123565950 - MER67D LTR ERV1 -213 301 2 396 167 0 0 chr11 25218247 25218343 -123565129 + (TA)n Simple_repeat Simple_repeat 2 97 0 1068 203 0 5 chr11 25218347 25218539 -123564933 - AluJo SINE Alu -121 191 1 2077 110 14 0 chr11 25219231 25219512 -123563960 - AluSc SINE Alu -24 285 1 811 255 51 1 chr11 25219578 25219804 -123563668 - L1MC3 LINE L1 -203 6141 5981 1047 213 199 42 chr11 25219954 25220357 -123563115 - MER31B LTR ERV1 0 466 1 1000 99 0 105 chr11 25220451 25220622 -123562850 + AluSx SINE Alu 1 153 -159 480 298 84 71 chr11 25221094 25221416 -123562056 - L3 LINE CR1 -60 1517 1192 279 235 15 15 chr11 25272703 25272771 -123510701 - MER39 LTR ERV1 -380 327 260 25 31 0 0 chr11 25273510 25273542 -123509930 + AT_rich Low_complexity Low_complexity 1 32 0 2977 265 32 18 chr11 25273968 25274987 -123508485 + L1MB7 LINE L1 5141 6176 -8 2883 258 14 33 chr11 25275316 25276333 -123507139 + L1 LINE L1 3305 4301 -1845 1572 209 36 3 chr11 25276434 25276798 -123506674 - L1 LINE L1 -1678 4468 4093 4103 147 10 13 chr11 25276798 25277471 -123506001 + L1P3 LINE L1 11 681 -5780 580 305 114 35 chr11 25277684 25277960 -123505512 - L2 LINE L2 -1529 1785 1476 1739 211 11 11 chr11 25277960 25278325 -123505147 + MLT1A1 LTR MaLR 1 365 0 580 305 114 35 chr11 25278325 25278389 -123505083 - L2 LINE L2 -1838 1476 1418 266 353 22 43 chr11 25278644 25278828 -123504644 - LTR33 LTR ERVL -321 200 21 426 268 35 30 chr11 25278884 25279082 -123504390 + MLT2B1 LTR ERVL 2 200 -320 21 57 0 0 chr11 25279326 25279361 -123504111 + AT_rich Low_complexity Low_complexity 1 35 0 1995 127 3 0 chr11 25279548 25279840 -123503632 + AluSc SINE Alu 1 293 -16 1854 272 92 8 chr11 25279850 25280493 -123502979 + L1PBa LINE L1 128 824 -6039 5393 153 15 9 chr11 25280593 25281750 -123501722 + L1P3 LINE L1 4426 5589 -583 2423 112 135 105 chr11 25282639 25283231 -123500241 - MER4B LTR ERV1 0 610 1 2286 50 0 3 chr11 25283958 25284284 -123499188 + AluY SINE Alu 1 325 0 409 254 19 64 chr11 25284820 25284929 -123498543 - MER31A LTR ERV1 0 543 431 1467 178 68 29 chr11 25284929 25285210 -123498262 + AluJb SINE Alu 1 292 -20 409 254 19 64 chr11 25285210 25285314 -123498158 - MER31A LTR ERV1 -112 431 263 6628 68 11 2 chr11 25285423 25287041 -123496431 + L1PA7 LINE L1 4521 6150 -4 25 31 0 0 chr11 25287073 25287105 -123496367 + AT_rich Low_complexity Low_complexity 1 32 0 650 223 56 9 chr11 25287124 25287339 -123496133 - L1 LINE L1 -2041 4105 3881 1103 316 130 31 chr11 25287798 25288000 -123495472 + L1MC4 LINE L1 6444 6625 -1417 265 24 48 0 chr11 25288000 25288042 -123495430 + (CATAT)n Simple_repeat Simple_repeat 2 45 0 1103 316 130 31 chr11 25288042 25289076 -123494396 + L1MC4 LINE L1 6625 7904 -138 219 167 0 0 chr11 25289095 25289137 -123494335 + (TATG)n Simple_repeat Simple_repeat 2 43 0 229 241 72 0 chr11 25289173 25289256 -123494216 + L1MC4 LINE L1 6615 6703 -1339 180 152 0 0 chr11 25289320 25289353 -123494119 + GA-rich Low_complexity Low_complexity 2 34 0 407 280 33 101 chr11 25289498 25289805 -123493667 - L1 LINE L1 -2609 3537 3252 372 330 104 31 chr11 25289930 25290218 -123493254 - L1M4 LINE L1 -1886 4260 3952 1975 168 28 33 chr11 25290232 25290596 -123492876 - THE1B LTR MaLR -2 362 1 10368 120 29 3 chr11 25290596 25292136 -123491336 - THE1B-int LTR MaLR 0 1580 1 2047 124 59 36 chr11 25292136 25292492 -123490980 - THE1B LTR MaLR 0 364 1 240 274 147 49 chr11 25292645 25293549 -123489923 - L1M4 LINE L1 -2369 3777 2785 44 88 0 0 chr11 25293823 25293937 -123489535 + AT_rich Low_complexity Low_complexity 1 114 0 401 275 81 12 chr11 25293937 25294097 -123489375 - L1M4 LINE L1 -3726 2420 2250 460 309 39 15 chr11 25294715 25294919 -123488553 - MLT1A1 LTR MaLR -13 352 144 1607 240 14 25 chr11 25295500 25295867 -123487605 - MLT1A2 LTR MaLR -11 363 1 21 57 0 0 chr11 25295928 25295963 -123487509 + AT_rich Low_complexity Low_complexity 1 35 0 300 237 48 145 chr11 25296239 25296425 -123487047 - MER5B DNA MER1_type -8 170 3 268 318 64 0 chr11 25297857 25297967 -123485505 + MIR SINE MIR 124 240 -22 384 321 130 16 chr11 25298777 25298961 -123484511 + MIR SINE MIR 58 262 0 1142 264 83 13 chr11 25299901 25300287 -123483185 - L1MC4 LINE L1 -253 7789 7377 24 67 0 0 chr11 25300459 25300504 -123482968 + AT_rich Low_complexity Low_complexity 1 45 0 224 300 70 75 chr11 25300546 25300773 -123482699 - MIR SINE MIR -35 227 2 278 384 23 0 chr11 25301100 25301233 -123482239 + MIR3 SINE MIR 28 163 -45 3184 112 0 0 chr11 25301265 25301740 -123481732 - L1PA8 LINE L1 -932 5214 4740 6639 84 3 1 chr11 25301740 25302710 -123480762 + L1PA8 LINE L1 5191 6162 -10 715 251 0 0 chr11 25303154 25303333 -123480139 + L1PA8 LINE L1 5984 6162 -10 371 318 8 39 chr11 25303748 25303877 -123479595 - MER5B DNA MER1_type -49 129 5 271 309 55 27 chr11 25304388 25304498 -123478974 - MIR SINE MIR -64 144 32 22 80 0 0 chr11 25304725 25304775 -123478697 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr11 25305069 25305091 -123478381 + AT_rich Low_complexity Low_complexity 1 22 0 319 317 67 0 chr11 25305374 25305494 -123477978 - L2 LINE L2 0 3313 3186 485 339 27 42 chr11 25306316 25306392 -123477080 + MIR SINE MIR 4 80 -182 2279 71 0 0 chr11 25306392 25306709 -123476763 - AluY SINE Alu 0 317 1 485 339 27 42 chr11 25306709 25306891 -123476581 + MIR SINE MIR 80 259 -3 216 209 0 0 chr11 25307873 25307916 -123475556 + (TA)n Simple_repeat Simple_repeat 2 44 0 348 94 0 0 chr11 25309338 25309391 -123474081 + (TG)n Simple_repeat Simple_repeat 2 54 0 296 253 33 22 chr11 25309619 25309710 -123473762 - MER5A DNA MER1_type 0 189 98 289 314 64 69 chr11 25309685 25309889 -123473583 + L2 LINE L2 2753 2955 -359 * 26 0 0 0 chr11 25310008 25310034 -123473438 + AT_rich Low_complexity Low_complexity 1 26 0 27 22 0 22 chr11 25311212 25311230 -123472242 + AT_rich Low_complexity Low_complexity 1 18 -26 2319 38 42 10 chr11 25311230 25311518 -123471954 - AluY SINE Alu -14 297 1 27 22 0 22 chr11 25311518 25311544 -123471928 + AT_rich Low_complexity Low_complexity 18 44 0 21 36 0 0 chr11 25312770 25312798 -123470674 + AT_rich Low_complexity Low_complexity 1 28 0 2369 94 0 7 chr11 25313028 25313336 -123470136 - AluSp SINE Alu -3 310 5 2219 93 0 3 chr11 25313351 25313641 -123469831 - AluY SINE Alu -22 289 1 717 357 116 13 chr11 25313749 25314449 -123469023 + L2 LINE L2 2551 3313 0 218 354 58 49 chr11 25315275 25315498 -123467974 - MIR SINE MIR -17 245 21 30 0 0 0 chr11 25315526 25315556 -123467916 + AT_rich Low_complexity Low_complexity 1 30 0 232 343 15 0 chr11 25316084 25316151 -123467321 - L2 LINE L2 0 3313 3246 11468 104 22 7 chr11 25316674 25319202 -123464270 - L1P3 LINE L1 -1705 4756 2179 12518 104 5 5 chr11 25319208 25320926 -123462546 - L1P3 LINE L1 -4734 1727 11 4986 178 46 15 chr11 25320926 25322934 -123460538 + L1PB4 LINE L1 4093 6151 -5 422 143 13 0 chr11 25323114 25323191 -123460281 + (TA)n Simple_repeat Simple_repeat 2 79 0 24 0 0 0 chr11 25323245 25323269 -123460203 + AT_rich Low_complexity Low_complexity 1 24 0 369 208 19 75 chr11 25323416 25323522 -123459950 + MIR SINE MIR 160 259 -3 22 35 0 0 chr11 25324460 25324489 -123458983 + AT_rich Low_complexity Low_complexity 1 29 0 268 181 84 48 chr11 25324873 25324956 -123458516 - MER39 LTR ERV1 -5 702 617 25 51 0 0 chr11 25325042 25325081 -123458391 + AT_rich Low_complexity Low_complexity 1 39 0 634 226 51 0 chr11 25325211 25325388 -123458084 + L1MB7 LINE L1 4959 5144 -1002 * 7176 176 27 35 chr11 25325386 25327393 -123456079 + L1P3 LINE L1 1 1997 -4464 1417 193 53 92 chr11 25327393 25327930 -123455542 - LTR22A LTR ERVK 0 458 1 3502 172 22 0 chr11 25327930 25328553 -123454919 + L1P3 LINE L1 1992 2628 -3833 3477 234 43 16 chr11 25328536 25329577 -123453895 + L1MB7 LINE L1 5114 6176 -8 * 328 215 13 0 chr11 25330368 25330447 -123453025 - MLT1K LTR MaLR -162 426 347 213 367 28 18 chr11 25330946 25331055 -123452417 + MIR SINE MIR 5 114 -148 195 333 0 0 chr11 25331087 25331141 -123452331 + MIR SINE MIR 209 262 0 433 224 16 0 chr11 25331516 25331641 -123451831 + (TG)n Simple_repeat Simple_repeat 2 128 0 2118 114 4 0 chr11 25331657 25331937 -123451535 - AluSx SINE Alu -18 294 14 189 393 0 0 chr11 25332616 25332677 -123450795 - L2 LINE L2 -208 3064 3004 1111 252 65 42 chr11 25333993 25334492 -123448980 + MER34B LTR ERV1 5 565 0 976 188 11 5 chr11 25335148 25335334 -123448138 + Tigger1 DNA MER2_type 1 187 -2231 897 128 0 0 chr11 25335334 25335487 -123447985 - AluSg/x SINE Alu 0 309 157 3124 155 95 10 chr11 25335488 25336101 -123447371 + Tigger1 DNA MER2_type 185 849 -1569 345 24 0 0 chr11 25336357 25336399 -123447073 + (CA)n Simple_repeat Simple_repeat 2 43 0 338 296 76 43 chr11 25336775 25337052 -123446420 - L1ME LINE L1 -307 5814 5529 25 65 0 0 chr11 25337089 25337135 -123446337 + AT_rich Low_complexity Low_complexity 1 46 0 337 357 14 29 chr11 25338712 25338852 -123444620 - MIR3 SINE MIR -69 139 2 333 369 15 46 chr11 25339602 25339797 -123443675 + MIR SINE MIR 20 208 -54 249 139 0 0 chr11 25340728 25340771 -123442701 + (CA)n Simple_repeat Simple_repeat 2 44 0 684 295 174 35 chr11 25340895 25341845 -123441627 - L1ME LINE L1 -2348 3798 2717 2398 201 56 8 chr11 25341990 25342472 -123441000 + MER21A LTR ERV1 427 931 0 5250 178 50 33 chr11 25342532 25342689 -123440783 + MER21-int LTR ERV1 3084 3237 -3521 4002 163 85 26 chr11 25342689 25343540 -123439932 - MER4D LTR ERV1 0 903 3 5250 178 50 33 chr11 25343540 25343929 -123439543 + MER21-int LTR ERV1 3237 3618 -3140 2178 123 3 0 chr11 25343929 25344229 -123439243 - AluSq SINE Alu -12 301 1 5250 178 50 33 chr11 25344229 25344792 -123438680 + MER21-int LTR ERV1 3618 4212 -2546 777 183 0 0 chr11 25344796 25344922 -123438550 + FLAM_C SINE Alu 1 126 -17 3091 219 13 14 chr11 25344969 25345596 -123437876 + MER21-int LTR ERV1 1218 1843 -2348 792 225 88 4 chr11 25345596 25345883 -123437589 + MER21B LTR ERV1 171 501 -362 28 0 0 0 chr11 25346227 25346255 -123437217 + AT_rich Low_complexity Low_complexity 1 28 0 375 335 7 0 chr11 25346760 25346912 -123436560 - HAL1 LINE L1 -956 1551 1399 24 0 0 0 chr11 25347366 25347390 -123436082 + AT_rich Low_complexity Low_complexity 1 24 0 1343 183 41 59 chr11 25349057 25349434 -123434038 - MLT2B3 LTR ERVL 0 554 192 996 190 19 9 chr11 25349504 25349715 -123433757 - MLT2B3 LTR ERVL -341 213 1 208 269 0 0 chr11 25350250 25350302 -123433170 + (TA)n Simple_repeat Simple_repeat 1 52 0 2135 113 3 0 chr11 25350336 25350628 -123432844 + AluSc SINE Alu 1 293 -16 11076 175 118 12 chr11 25350638 25353117 -123430355 + L1PBa LINE L1 128 2968 -3894 2188 122 0 3 chr11 25353117 25353440 -123430032 + AluSx SINE Alu 3 312 0 11076 175 118 12 chr11 25353440 25353868 -123429604 + L1PBa LINE L1 2968 3349 -3513 14092 198 22 14 chr11 25353968 25354266 -123429206 + L1PB1 LINE L1 2588 2882 -3985 1995 143 0 3 chr11 25354266 25354587 -123428885 + AluSx SINE Alu 5 312 0 14092 198 22 14 chr11 25354587 25358174 -123425298 + L1PB1 LINE L1 2882 6507 -360 779 137 12 8 chr11 25358174 25358416 -123425056 + (TA)n Simple_repeat Simple_repeat 1 243 0 2320 128 8 3 chr11 25358453 25358820 -123424652 + L1PB1 LINE L1 6499 6867 0 223 325 86 0 chr11 25359344 25359461 -123424011 - MIR SINE MIR -58 204 78 1339 218 71 67 chr11 25360808 25361244 -123422228 + MER74A LTR ERVL 121 558 0 308 324 27 18 chr11 25361483 25361594 -123421878 - MER5A DNA MER1_type -3 186 75 356 296 45 22 chr11 25362923 25363102 -123420370 + MIR SINE MIR 76 258 -4 205 196 0 54 chr11 25363541 25363597 -123419875 - MIR SINE MIR -1 261 209 486 0 0 0 chr11 25363716 25363770 -123419702 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 32 86 0 0 chr11 25363844 25363925 -123419547 + AT_rich Low_complexity Low_complexity 1 81 0 22 56 0 0 chr11 25363941 25363977 -123419495 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 25364009 25364032 -123419440 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 307 341 132 49 chr11 25364605 25364992 -123418480 - L3 LINE CR1 -73 1504 1086 1390 175 37 28 chr11 25366493 25366819 -123416653 - L1MA8 LINE L1 -172 6119 5791 195 321 83 0 chr11 25367333 25367417 -123416055 + MIR SINE MIR 111 201 -61 1338 186 39 29 chr11 25367966 25368314 -123415158 - L1MA8 LINE L1 -172 6119 5767 345 284 99 0 chr11 25368779 25368920 -123414552 + MIR SINE MIR 85 239 -23 341 282 195 40 chr11 25369267 25369416 -123414056 + MER5A DNA MER1_type 10 181 -8 292 267 183 8 chr11 25371494 25371614 -123411858 + MIR SINE MIR 49 189 -73 288 130 0 0 chr11 25371682 25371728 -123411744 + (CCA)n Simple_repeat Simple_repeat 1 46 0 345 347 111 11 chr11 25371835 25372025 -123411447 + MIR SINE MIR 32 240 -22 834 113 127 7 chr11 25372925 25373075 -123410397 + THE1B LTR MaLR 197 364 0 390 346 35 48 chr11 25373215 25373443 -123410029 - L2 LINE L2 -530 2784 2560 209 179 0 0 chr11 25373495 25373534 -123409938 + (TG)n Simple_repeat Simple_repeat 2 40 0 200 312 128 16 chr11 25373691 25373816 -123409656 + MIR SINE MIR 79 217 -45 238 261 43 14 chr11 25374356 25374425 -123409047 + MIR SINE MIR 140 210 -52 222 250 188 18 chr11 25374432 25374544 -123408928 - MIR SINE MIR -118 144 14 23 0 0 0 chr11 25374670 25374693 -123408779 + AT_rich Low_complexity Low_complexity 1 23 0 375 98 0 0 chr11 25375374 25375435 -123408037 - L1MA3 LINE L1 0 6305 6245 414 235 61 62 chr11 25375509 25375728 -123407744 - L1MC/D LINE L1 -726 5428 5298 1569 195 19 75 chr11 25375728 25376139 -123407333 - MLT1B LTR MaLR -2 388 1 414 235 61 62 chr11 25376139 25376184 -123407288 - L1MC/D LINE L1 -856 5298 5254 205 200 0 0 chr11 25376401 25376441 -123407031 + (TA)n Simple_repeat Simple_repeat 1 40 0 326 297 109 38 chr11 25376550 25376863 -123406609 - L1MC/D LINE L1 -1314 4832 4498 247 308 76 26 chr11 25376895 25377236 -123406236 - L1MC/D LINE L1 -1717 4429 4072 1576 190 3 7 chr11 25377267 25377556 -123405916 - AluJb SINE Alu -24 288 1 1529 174 3 24 chr11 25378058 25378346 -123405126 - AluJo SINE Alu -30 282 1 1252 280 73 19 chr11 25378346 25378882 -123404590 - L1ME3 LINE L1 -334 5762 5198 2017 138 3 0 chr11 25378963 25379254 -123404218 - AluSx SINE Alu -20 292 1 1980 129 82 18 chr11 25379313 25379655 -123403817 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr11 25379874 25379905 -123403567 + AT_rich Low_complexity Low_complexity 1 31 0 551 294 90 22 chr11 25379908 25380275 -123403197 - L1ME3 LINE L1 -1313 4767 4376 390 274 144 5 chr11 25380310 25380525 -123402947 - L1ME3 LINE L1 -1894 4186 3942 1963 47 63 4 chr11 25380915 25381201 -123402271 + AluY SINE Alu 13 313 0 274 223 175 19 chr11 25381224 25381327 -123402145 + MLT1F LTR MaLR 408 526 -16 514 275 100 46 chr11 25381355 25381744 -123401728 - L1ME3 LINE L1 -2234 3846 3437 23 78 0 0 chr11 25381816 25381867 -123401605 + AT_rich Low_complexity Low_complexity 1 51 0 726 316 18 18 chr11 25382024 25382302 -123401170 - MLT1H LTR MaLR -271 278 1 264 197 13 26 chr11 25382388 25382464 -123401008 - L1ME3 LINE L1 -5954 116 42 23 0 0 0 chr11 25383171 25383194 -123400278 + AT_rich Low_complexity Low_complexity 1 23 0 1505 243 36 90 chr11 25383269 25383858 -123399614 + MER92B LTR ERV1 3 559 -77 2357 125 22 22 chr11 25383895 25384175 -123399297 + L1PA14 LINE L1 5755 6037 -124 2313 62 3 26 chr11 25384175 25384480 -123398992 + AluY SINE Alu 1 298 -13 2357 125 22 22 chr11 25384480 25384606 -123398866 + L1PA14 LINE L1 6036 6161 0 26 50 0 0 chr11 25384854 25384894 -123398578 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr11 25384964 25384987 -123398485 + AT_rich Low_complexity Low_complexity 1 23 0 1971 128 3 0 chr11 25384987 25385275 -123398197 - AluSx SINE Alu -23 289 1 268 342 8 0 chr11 25385283 25385400 -123398072 - L1MC4 LINE L1 -1030 7012 6895 22 0 0 0 chr11 25385722 25385744 -123397728 + AT_rich Low_complexity Low_complexity 1 22 0 214 365 141 5 chr11 25385783 25385975 -123397497 - MIR SINE MIR 0 262 45 203 400 65 6 chr11 25386196 25386366 -123397106 - L2 LINE L2 -189 3083 2904 396 0 0 0 chr11 25386582 25386626 -123396846 + (CA)n Simple_repeat Simple_repeat 1 44 0 449 153 14 0 chr11 25386643 25386715 -123396757 + MER2 DNA MER2_type 48 120 -225 1172 82 33 49 chr11 25387564 25387748 -123395724 - L1PA8 LINE L1 0 6172 5992 345 115 115 26 chr11 25387756 25387834 -123395638 + MER2 DNA MER2_type 123 207 -138 2000 138 0 22 chr11 25387894 25388206 -123395266 + AluSx SINE Alu 1 305 -7 428 171 12 0 chr11 25388249 25388331 -123395141 - AluS SINE Alu -230 83 1 923 276 133 13 chr11 25389052 25389367 -123394105 - LTR18A LTR ERVL 0 357 5 643 306 67 63 chr11 25389657 25389890 -123393582 + MLT1J LTR MaLR 1 232 -279 7818 26 6 0 chr11 25389890 25391588 -123391884 - L1PA3 LINE L1 -3 6152 4449 643 306 67 63 chr11 25391588 25391861 -123391611 + MLT1J LTR MaLR 232 509 -2 3537 128 17 25 chr11 25392205 25392236 -123391236 - L1M1 LINE L1 -4371 3194 3164 3735 104 5 19 chr11 25392236 25392812 -123390660 - L1MA2 LINE L1 0 6304 5737 3537 128 17 25 chr11 25392812 25393411 -123390061 - L1M1 LINE L1 -4401 3164 2569 5464 101 7 20 chr11 25393423 25393732 -123389740 - L1PA8A LINE L1 -1 6130 5818 258 56 0 0 chr11 25393732 25393768 -123389704 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1798 97 101 0 chr11 25393768 25394025 -123389447 - AluY SINE Alu -28 283 1 5464 101 7 20 chr11 25394025 25394549 -123388923 - L1PA8A LINE L1 -311 5820 5307 3959 190 42 7 chr11 25394542 25395314 -123388158 - L1M1 LINE L1 -6755 810 12 * 347 236 42 0 chr11 25395317 25395389 -123388083 - MER5A DNA MER1_type -114 75 1 363 78 0 0 chr11 25395520 25395571 -123387901 + (TG)n Simple_repeat Simple_repeat 2 52 0 29 28 0 0 chr11 25396870 25396906 -123386566 + AT_rich Low_complexity Low_complexity 1 36 0 2009 189 100 23 chr11 25397083 25397553 -123385919 - L1MC1 LINE L1 -19 6314 5809 597 174 22 22 chr11 25397565 25397743 -123385729 + GA-rich Low_complexity Low_complexity 3 180 0 341 286 94 16 chr11 25397749 25397941 -123385531 - L2 LINE L2 -1209 2105 1899 389 270 40 24 chr11 25399088 25399214 -123384258 + MIR SINE MIR 129 256 -6 459 313 133 9 chr11 25400080 25400313 -123383159 - MIR SINE MIR 0 262 1 21 36 0 0 chr11 25400834 25400862 -123382610 + AT_rich Low_complexity Low_complexity 1 28 0 316 183 0 0 chr11 25401469 25401529 -123381943 - HsTC2 DNA Tc2 -1835 63 4 276 167 0 19 chr11 25401617 25401671 -123381801 - MLT1A1 LTR MaLR -269 96 44 3469 168 39 68 chr11 25401695 25401968 -123381504 + MER54B LTR ERVL 61 340 -453 266 0 0 29 chr11 25401968 25402003 -123381469 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3469 168 39 68 chr11 25402003 25402483 -123380989 + MER54B LTR ERVL 340 792 -1 22 0 0 0 chr11 25403281 25403303 -123380169 + AT_rich Low_complexity Low_complexity 1 22 0 2121 114 24 32 chr11 25403453 25403831 -123379641 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr11 25405675 25405698 -123377774 + (T)n Simple_repeat Simple_repeat 1 23 0 301 328 174 24 chr11 25405829 25406076 -123377396 + L1MC/D LINE L1 5353 5636 -2172 197 136 0 45 chr11 25406119 25406163 -123377309 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr11 25407200 25407227 -123376245 + AT_rich Low_complexity Low_complexity 1 27 0 268 406 104 0 chr11 25408973 25409175 -123374297 + L2 LINE L2 2690 2912 -402 231 300 0 0 chr11 25409666 25409726 -123373746 + L2 LINE L2 3213 3272 0 264 309 64 45 chr11 25410835 25410945 -123372527 + MIR3 SINE MIR 44 155 -53 296 318 93 13 chr11 25411157 25411308 -123372164 - MIR SINE MIR -69 193 31 408 273 30 38 chr11 25411542 25411674 -123371798 + MIR SINE MIR 98 228 -34 23 33 0 0 chr11 25411813 25411843 -123371629 + AT_rich Low_complexity Low_complexity 1 30 0 285 291 60 34 chr11 25412047 25412164 -123371308 - MIR3 SINE MIR -2 206 87 26 0 0 0 chr11 25412343 25412369 -123371103 + AT_rich Low_complexity Low_complexity 1 26 0 2411 76 0 0 chr11 25413353 25413654 -123369818 - AluY SINE Alu -9 302 2 582 262 142 21 chr11 25414303 25414536 -123368936 - MIR SINE MIR 0 262 2 2310 134 27 61 chr11 25414638 25415079 -123368393 + MSTB LTR MaLR 1 426 0 480 251 107 74 chr11 25416350 25416565 -123366907 + L2 LINE L2 1975 2196 -1118 662 267 98 36 chr11 25416594 25416728 -123366744 - L2 LINE L2 -700 2614 2490 824 153 0 7 chr11 25416728 25416872 -123366600 + L1PA15 LINE L1 6019 6161 -4 662 267 98 36 chr11 25416872 25417014 -123366458 - L2 LINE L2 -824 2490 2321 682 349 31 66 chr11 25417036 25417520 -123365952 - MLT2F LTR ERVL -13 650 184 401 327 69 27 chr11 25417555 25417815 -123365657 + L2 LINE L2 2968 3238 -75 368 215 0 0 chr11 25417986 25418065 -123365407 + MER116 DNA Mariner 1 79 -1 215 200 0 0 chr11 25418127 25418162 -123365310 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 116 23 23 chr11 25419119 25419162 -123364310 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 33 56 0 0 chr11 25419756 25419810 -123363662 + AT_rich Low_complexity Low_complexity 1 54 0 1681 204 63 37 chr11 25420527 25420887 -123362585 + MER39 LTR ERV1 260 634 -73 2104 105 10 26 chr11 25420887 25421193 -123362279 - AluSx SINE Alu -11 301 1 1681 204 63 37 chr11 25421193 25421263 -123362209 + MER39 LTR ERV1 634 701 -6 361 194 0 0 chr11 25421998 25422065 -123361407 + MER63 DNA MER1_type 681 747 -313 303 268 12 12 chr11 25422070 25422152 -123361320 + MER63 DNA MER1_type 980 1061 0 293 221 197 33 chr11 25422524 25422646 -123360826 + LTR16C LTR ERVL 350 491 0 1571 138 0 63 chr11 25422896 25422964 -123360508 + AluSx SINE Alu 45 116 -196 2129 128 33 19 chr11 25422964 25423323 -123360149 + THE1B LTR MaLR 1 364 0 1571 138 0 63 chr11 25423323 25423522 -123359950 + AluSx SINE Alu 116 295 -17 1269 212 111 55 chr11 25423549 25424033 -123359439 + MER39 LTR ERV1 9 705 -2 273 219 0 31 chr11 25424158 25424222 -123359250 + MER21B LTR ERV1 1 62 -801 2644 152 122 50 chr11 25424613 25425300 -123358172 - L1MB3 LINE L1 -264 5919 5185 832 214 3 5 chr11 25425318 25425637 -123357835 - MLT1A1 LTR MaLR 0 365 1 1043 200 8 12 chr11 25425637 25425887 -123357585 + L1MB3 LINE L1 5928 6176 -7 1620 245 52 23 chr11 25425936 25426450 -123357022 + L1ME3A LINE L1 5642 6170 0 254 315 34 0 chr11 25426461 25426550 -123356922 - MIR SINE MIR -111 151 60 21 57 0 0 chr11 25426889 25426924 -123356548 + AT_rich Low_complexity Low_complexity 1 35 0 180 97 0 0 chr11 25427796 25427827 -123355645 + (T)n Simple_repeat Simple_repeat 1 31 0 184 228 88 35 chr11 25427953 25428010 -123355462 - L2 LINE L2 -2482 832 773 385 334 15 6 chr11 25428596 25428756 -123354716 - MIR SINE MIR -67 141 29 2095 105 24 0 chr11 25428758 25429052 -123354420 - AluSg SINE Alu -9 301 1 192 277 84 25 chr11 25429059 25429178 -123354294 + MIR SINE MIR 72 197 -65 1144 218 83 0 chr11 25429879 25430131 -123353341 + AluJo SINE Alu 9 281 -31 21 57 0 0 chr11 25430139 25430174 -123353298 + AT_rich Low_complexity Low_complexity 1 35 0 205 161 0 0 chr11 25430220 25430251 -123353221 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 498 324 31 18 chr11 25430784 25431006 -123352466 + MIR SINE MIR 35 259 -3 622 335 69 4 chr11 25431174 25431419 -123352053 - MIR SINE MIR -1 261 1 212 292 52 21 chr11 25431845 25431941 -123351531 - MIR SINE MIR -156 106 8 360 0 0 0 chr11 25432364 25432404 -123351068 + (CA)n Simple_repeat Simple_repeat 1 40 0 268 287 35 17 chr11 25432705 25432820 -123350652 + MARNA DNA Mariner 246 362 -224 24 0 0 0 chr11 25432823 25432847 -123350625 + AT_rich Low_complexity Low_complexity 1 24 0 256 296 160 0 chr11 25436290 25436415 -123347057 + MER67D LTR ERV1 370 514 0 265 380 64 11 chr11 25437279 25437466 -123346006 + MIR SINE MIR 54 250 -12 2045 129 3 3 chr11 25437502 25437797 -123345675 - AluSc SINE Alu -14 295 1 24 32 0 0 chr11 25438289 25438320 -123345152 + AT_rich Low_complexity Low_complexity 1 31 0 263 286 0 0 chr11 25438772 25438835 -123344637 - L2 LINE L2 -820 2494 2432 1237 322 110 48 chr11 25438866 25439142 -123344330 - L2 LINE L2 -964 2350 2092 2017 136 0 0 chr11 25439142 25439451 -123344021 + AluSx SINE Alu 1 309 0 1237 322 110 48 chr11 25439451 25439991 -123343481 - L2 LINE L2 -1222 2092 1475 1981 190 11 8 chr11 25439991 25440355 -123343117 + MLT1A1 LTR MaLR 1 365 0 1237 322 110 48 chr11 25440355 25440402 -123343070 - L2 LINE L2 -1839 1475 1432 265 321 30 23 chr11 25440418 25440549 -123342923 - LTR33 LTR ERVL -4 517 386 311 341 16 23 chr11 25440706 25440835 -123342637 - LTR33 LTR ERVL -354 167 40 183 242 0 0 chr11 25440879 25440912 -123342560 - L2 LINE L2 -1898 1416 1384 1160 227 14 101 chr11 25440913 25441370 -123342102 + MLT2D LTR ERVL 3 520 0 401 240 0 158 chr11 25441370 25441458 -123342014 - L2 LINE L2 -1925 1389 1289 2327 108 0 0 chr11 25441458 25441765 -123341707 + AluSg SINE Alu 1 307 -3 401 240 0 158 chr11 25441765 25441922 -123341550 - L2 LINE L2 -2025 1289 1183 579 146 0 10 chr11 25441924 25442020 -123341452 + HSMAR2 DNA Mariner 253 347 -955 447 227 31 10 chr11 25442021 25442118 -123341354 + FLAM_A SINE Alu 1 99 -43 381 159 55 5 chr11 25443216 25443437 -123340035 + (TA)n Simple_repeat Simple_repeat 1 232 0 31 0 0 0 chr11 25443729 25443760 -123339712 + AT_rich Low_complexity Low_complexity 1 31 0 281 347 0 10 chr11 25444095 25444193 -123339279 + MIR3 SINE MIR 99 195 -13 226 245 0 0 chr11 25447215 25447264 -123336208 - L2 LINE L2 -3 3310 3262 235 261 0 0 chr11 25447294 25447340 -123336132 + polypurine Low_complexity Low_complexity 2 47 0 272 234 360 9 chr11 25447993 25448104 -123335368 + MER5A DNA MER1_type 37 186 -3 669 67 0 0 chr11 25448706 25448796 -123334676 + L1PA6 LINE L1 6062 6151 -3 206 103 0 26 chr11 25449333 25449372 -123334100 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1120 260 62 52 chr11 25449814 25450314 -123333158 - MLT1D LTR MaLR 0 505 1 298 245 9 28 chr11 25451245 25451351 -123332121 + CT-rich Low_complexity Low_complexity 4 107 0 1496 204 9 46 chr11 25451503 25451827 -123331645 - AluJo SINE Alu 0 312 1 251 182 0 0 chr11 25451947 25451991 -123331481 - L2 LINE L2 -2 3311 3268 274 224 26 13 chr11 25452059 25452135 -123331337 + L1MB1 LINE L1 6097 6173 -16 2318 70 3 3 chr11 25452653 25452951 -123330521 + AluY SINE Alu 1 298 -13 21 57 0 0 chr11 25454895 25454930 -123328542 + AT_rich Low_complexity Low_complexity 1 35 0 281 169 15 15 chr11 25454961 25455026 -123328446 + LTR60 LTR ERV1 4 68 -518 351 113 0 0 chr11 25455030 25455083 -123328389 - MLT2A1 LTR ERVL -1 443 391 296 130 81 0 chr11 25455087 25455248 -123328224 + (TA)n Simple_repeat Simple_repeat 1 174 0 317 158 68 0 chr11 25455272 25455585 -123327887 + (TA)n Simple_repeat Simple_repeat 1 334 0 279 0 0 0 chr11 25455584 25455615 -123327857 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2551 109 16 11 chr11 25455626 25456003 -123327469 - MLT2A1 LTR ERVL -65 379 1 1025 244 84 19 chr11 25456120 25456431 -123327041 + LTR43 LTR ERV1 132 462 -140 234 226 87 35 chr11 25456482 25456597 -123326875 + LTR43 LTR ERV1 462 582 -20 960 211 61 76 chr11 25456913 25457318 -123326154 + MLT1C LTR MaLR 8 378 -12 2164 126 22 22 chr11 25457933 25458297 -123325175 - THE1B LTR MaLR 0 364 1 2129 129 0 3 chr11 25459858 25460168 -123323304 + AluSx SINE Alu 3 311 -1 5591 157 35 3 chr11 25460420 25461429 -123322043 - L1MA6 LINE L1 -6 6294 5254 1822 123 87 0 chr11 25461540 25461816 -123321656 + AluSx SINE Alu 1 300 -12 923 263 7 25 chr11 25462371 25462652 -123320820 + MER93b LTR ERV1 98 373 0 241 194 0 28 chr11 25462851 25462882 -123320590 + A-rich Low_complexity Low_complexity 2 32 -39 1690 153 0 29 chr11 25462882 25463163 -123320309 + AluSx SINE Alu 3 275 -37 241 194 0 28 chr11 25463163 25463203 -123320269 + A-rich Low_complexity Low_complexity 32 71 0 826 178 0 0 chr11 25463889 25464024 -123319448 + AluJo SINE Alu 1 135 -177 2337 90 3 0 chr11 25464024 25464334 -123319138 + AluY SINE Alu 1 311 0 794 180 1 0 chr11 25464371 25464527 -123318945 + L1 LINE L1 3830 3986 -2160 644 217 31 0 chr11 25465107 25465236 -123318236 - FLAM_C SINE Alu -8 135 3 24 32 0 0 chr11 25465255 25465286 -123318186 + AT_rich Low_complexity Low_complexity 1 31 0 1722 155 7 35 chr11 25465286 25465576 -123317896 - AluJb SINE Alu -30 282 1 24 77 0 0 chr11 25466760 25466812 -123316660 + AT_rich Low_complexity Low_complexity 1 52 0 30 69 0 0 chr11 25466883 25466941 -123316531 + AT_rich Low_complexity Low_complexity 1 58 0 219 333 46 0 chr11 25467026 25467113 -123316359 + MER5B DNA MER1_type 87 177 -1 847 186 102 8 chr11 25467428 25467664 -123315808 - MER33 DNA MER1_type -35 289 32 30 45 0 0 chr11 25467927 25467971 -123315501 + AT_rich Low_complexity Low_complexity 1 44 0 226 258 101 22 chr11 25468276 25468365 -123315107 - MLT1J LTR MaLR -24 487 392 2111 152 87 20 chr11 25468461 25468862 -123314610 + MSTA LTR MaLR 1 428 0 2518 215 25 7 chr11 25519552 25520119 -123263353 + L1MD3 LINE L1 7414 7990 -5 25 83 0 0 chr11 25520206 25520266 -123263206 + AT_rich Low_complexity Low_complexity 1 60 0 6567 62 0 39 chr11 25520270 25521649 -123261823 + L1PA5 LINE L1 4836 6151 -3 24 85 0 0 chr11 25521649 25521708 -123261764 + AT_rich Low_complexity Low_complexity 1 59 0 255 203 127 13 chr11 25521973 25522052 -123261420 - L1MA4A LINE L1 -27 6276 6189 3625 162 23 16 chr11 25522056 25522792 -123260680 - L1MA4A LINE L1 -181 6122 5382 39 22 0 0 chr11 25523487 25523533 -123259939 + AT_rich Low_complexity Low_complexity 1 46 0 981 129 6 0 chr11 25523539 25523702 -123259770 + L1MA4A LINE L1 6136 6299 -4 197 65 32 0 chr11 25524523 25524554 -123258918 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1765 154 7 7 chr11 25524556 25524836 -123258636 - AluSx SINE Alu -32 280 1 1771 149 25 4 chr11 25524852 25525127 -123258345 - AluSx SINE Alu -29 283 3 21 0 0 0 chr11 25525428 25525449 -123258023 + AT_rich Low_complexity Low_complexity 1 21 0 208 273 200 27 chr11 25526512 25526622 -123256850 - L2 LINE L2 -1 3271 3143 231 364 81 29 chr11 25526751 25526960 -123256512 - L2 LINE L2 -226 3046 2827 207 0 0 0 chr11 25527458 25527481 -123255991 + (CA)n Simple_repeat Simple_repeat 2 24 0 589 294 43 5 chr11 25527788 25527975 -123255497 - MLT1L LTR MaLR -5 610 417 33 25 0 0 chr11 25529385 25529425 -123254047 + AT_rich Low_complexity Low_complexity 1 40 0 236 310 0 0 chr11 25529536 25529607 -123253865 + MIR SINE MIR 79 149 -113 1313 158 39 28 chr11 25529704 25529989 -123253483 + L1MC1 LINE L1 6044 6331 -2 1903 174 7 0 chr11 25529999 25530309 -123253163 + AluSx SINE Alu 1 312 0 421 178 31 141 chr11 25530312 25530475 -123252997 + L1MD3 LINE L1 6970 7114 -881 472 239 0 0 chr11 25530476 25530568 -123252904 + MLT1F1 LTR MaLR 34 125 -442 4499 188 19 21 chr11 25530574 25531178 -123252294 + L1PB3 LINE L1 4125 4729 -1425 186 43 0 0 chr11 25531178 25531201 -123252271 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4499 188 19 21 chr11 25531201 25532270 -123251202 + L1PB3 LINE L1 4729 5792 -362 183 156 0 0 chr11 25532349 25532381 -123251091 + (TA)n Simple_repeat Simple_repeat 2 33 0 1677 192 3 0 chr11 25532382 25532684 -123250788 + L1PB3 LINE L1 5784 6086 -68 2456 76 0 16 chr11 25532687 25533003 -123250469 + AluY SINE Alu 1 311 0 7266 165 16 21 chr11 25533103 25534554 -123248918 - L1P LINE L1 -2597 3549 2106 22 0 0 0 chr11 25534658 25534680 -123248792 + AT_rich Low_complexity Low_complexity 1 22 0 263 374 43 0 chr11 25534830 25534989 -123248483 - L2 LINE L2 -356 2916 2770 22 0 0 0 chr11 25535126 25535148 -123248324 + AT_rich Low_complexity Low_complexity 1 22 0 234 62 0 0 chr11 25535506 25535538 -123247934 + (TTG)n Simple_repeat Simple_repeat 2 33 0 264 379 0 0 chr11 25535757 25535852 -123247620 - MIR SINE MIR -148 114 20 1149 220 55 42 chr11 25535960 25536342 -123247130 - MLT1B LTR MaLR -3 387 1 216 0 0 0 chr11 25536782 25536806 -123246666 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr11 25537306 25537334 -123246138 + AT_rich Low_complexity Low_complexity 1 28 0 377 249 35 35 chr11 25537650 25537823 -123245649 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 24 0 0 0 chr11 25537959 25537983 -123245489 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr11 25538268 25538309 -123245163 + AT_rich Low_complexity Low_complexity 1 41 0 334 324 144 14 chr11 25539044 25539266 -123244206 + MIR SINE MIR 12 262 0 230 265 0 0 chr11 25539981 25540030 -123243442 + L2 LINE L2 3219 3267 -5 25 83 0 0 chr11 25540486 25540546 -123242926 + AT_rich Low_complexity Low_complexity 1 60 0 278 316 0 0 chr11 25540878 25540954 -123242518 - L2 LINE L2 -298 2974 2899 2558 102 45 0 chr11 25541318 25541699 -123241773 - MER41B LTR ERV1 -236 399 2 5875 110 16 17 chr11 25541879 25542855 -123240617 + L1PA14 LINE L1 5185 6159 -2 196 74 0 0 chr11 25543769 25543796 -123239676 + MER5B DNA MER1_type 8 34 -144 356 234 19 56 chr11 25543871 25543978 -123239494 + MER5B DNA MER1_type 75 177 -1 181 133 133 22 chr11 25544344 25544389 -123239083 + L3 LINE CR1 369 418 -1159 234 0 0 0 chr11 25544599 25544625 -123238847 + (TA)n Simple_repeat Simple_repeat 1 26 0 411 375 45 15 chr11 25545748 25546015 -123237457 - L2 LINE L2 -899 2415 2141 1301 234 110 11 chr11 25546225 25546597 -123236875 - MER63B DNA MER1_type 0 436 28 279 0 0 0 chr11 25546611 25546642 -123236830 + (TG)n Simple_repeat Simple_repeat 2 32 0 28 29 0 0 chr11 25546823 25546858 -123236614 + AT_rich Low_complexity Low_complexity 1 35 0 628 331 20 28 chr11 25546983 25547231 -123236241 + MIR SINE MIR 4 249 -13 413 286 56 31 chr11 25547927 25548088 -123235384 - MER5B DNA MER1_type -4 174 10 706 264 146 65 chr11 25548982 25549380 -123234092 - LTR16B LTR ERVL -13 451 22 341 245 41 10 chr11 25550080 25550178 -123233294 + MLT1G LTR MaLR 2 102 -488 25 75 0 0 chr11 25550392 25550445 -123233027 + AT_rich Low_complexity Low_complexity 1 53 0 221 293 13 13 chr11 25550929 25551004 -123232468 + L2 LINE L2 2986 3060 -212 4841 115 8 0 chr11 25551046 25552137 -123231335 - L1PB2 LINE L1 -1 6150 5158 376 336 16 8 chr11 25552556 25552678 -123230794 + L2 LINE L2 3191 3313 0 353 318 13 0 chr11 25553544 25553698 -123229774 - L1MEc LINE L1 -3671 3286 3131 23 0 0 0 chr11 25553724 25553747 -123229725 + AT_rich Low_complexity Low_complexity 1 23 0 1671 231 35 79 chr11 25553759 25553903 -123229569 - L1M4 LINE L1 -914 5232 5083 2091 109 0 0 chr11 25553903 25554177 -123229295 - AluSg SINE Alu -36 274 1 1671 231 35 79 chr11 25554177 25554769 -123228703 - L1M4 LINE L1 -1063 5083 4528 307 288 21 68 chr11 25555046 25555125 -123228347 - L1MEc LINE L1 -4465 2673 2592 1653 184 0 16 chr11 25555125 25555430 -123228042 + AluJb SINE Alu 1 300 -12 307 288 21 68 chr11 25555430 25555541 -123227931 - L1MEc LINE L1 -4546 2592 2492 484 318 52 9 chr11 25555542 25555775 -123227697 - L1MEc LINE L1 -4719 2419 2177 441 317 91 2 chr11 25555999 25556243 -123227229 - L1MEc LINE L1 -5237 1757 1360 182 176 20 0 chr11 25556294 25556345 -123227127 + CT-rich Low_complexity Low_complexity 1 52 0 287 141 16 0 chr11 25556576 25556640 -123226832 + T-rich Low_complexity Low_complexity 1 65 0 9584 32 1 0 chr11 25556640 25558555 -123224917 - L1PA3 LINE L1 -3 6152 4235 28 48 0 0 chr11 25558911 25558953 -123224519 + AT_rich Low_complexity Low_complexity 1 42 0 704 180 11 17 chr11 25559350 25559528 -123223944 + GA-rich Low_complexity Low_complexity 3 179 0 724 117 63 0 chr11 25559567 25559678 -123223794 - AluSc SINE Alu -187 122 5 709 126 0 0 chr11 25559785 25559888 -123223584 - LTR12 LTR ERV1 0 714 612 336 221 12 0 chr11 25559888 25559974 -123223498 - LTR30 LTR ERV1 -80 642 556 1954 70 3 127 chr11 25559974 25560304 -123223168 - LTR12 LTR ERV1 -425 289 1 5576 95 1 11 chr11 25560307 25561087 -123222385 - HERV9 LTR ERV1 -2 8397 7626 2350 182 116 64 chr11 25561085 25561942 -123221530 - Harlequin LTR ERV1 -5156 1740 840 * 28393 96 16 8 chr11 25561909 25566723 -123216749 - Harlequin LTR ERV1 -3419 4980 40 708 159 7 76 chr11 25566691 25566836 -123216636 - pTR5 LTR ERV1 -2001 437 303 * 406 263 17 0 chr11 25566838 25566956 -123216516 - LTR30 LTR ERV1 -79 643 524 1727 61 7 138 chr11 25566956 25567253 -123216219 - LTR12 LTR ERV1 -456 258 1 2100 138 0 0 chr11 25567339 25567655 -123215817 + AluSx SINE Alu 2 317 0 186 339 36 0 chr11 25567657 25567713 -123215759 - MIR SINE MIR -182 80 23 575 237 12 64 chr11 25568054 25568227 -123215245 - MER52A LTR ERV1 0 1755 1592 318 319 90 11 chr11 25568300 25568488 -123214984 - MER52A LTR ERV1 -346 1409 1207 863 226 38 74 chr11 25568621 25569057 -123214415 - MER52A LTR ERV1 -143 898 284 9447 56 15 2 chr11 25569412 25570661 -123212811 - L1P LINE L1 -2311 3835 2571 * 10725 50 3 0 chr11 25570660 25572743 -123210729 + L1PA5 LINE L1 4057 6146 -8 242 280 27 13 chr11 25573057 25573132 -123210340 + MIR SINE MIR 65 140 -122 216 172 0 0 chr11 25573290 25573348 -123210124 + T-rich Low_complexity Low_complexity 1 58 0 2265 88 0 3 chr11 25574036 25574331 -123209141 + AluSg1 SINE Alu 1 294 -15 1966 125 21 6 chr11 25574512 25574840 -123208632 - L1MA3 LINE L1 0 6305 5973 1268 155 25 11 chr11 25574841 25575089 -123208383 + L1MA3 LINE L1 5744 5981 -319 2783 84 41 5 chr11 25575398 25575815 -123207657 + L1MA1 LINE L1 5861 6292 -10 2105 125 3 0 chr11 25575902 25576199 -123207273 + AluSx SINE Alu 1 298 -14 410 311 101 28 chr11 25576611 25577258 -123206214 - L1ME3A LINE L1 -220 5950 5257 359 65 74 19 chr11 25577329 25577437 -123206035 + (TA)n Simple_repeat Simple_repeat 1 114 0 2149 116 3 0 chr11 25577437 25577729 -123205743 - AluSg SINE Alu -15 295 3 381 278 16 21 chr11 25578119 25578313 -123205159 - L1ME3A LINE L1 -3113 3033 2841 1221 253 33 45 chr11 25578356 25578752 -123204720 + MLT1D LTR MaLR 113 503 -2 267 271 0 14 chr11 25578784 25578854 -123204618 + MIR SINE MIR 86 154 -108 8066 234 37 69 chr11 25579850 25585451 -123198021 - L1PA16 LINE L1 -11 7593 2182 261 339 44 56 chr11 25585749 25586177 -123197295 - L1PA16 LINE L1 -6173 1401 979 31 26 0 0 chr11 25586179 25586217 -123197255 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr11 25586761 25586781 -123196691 + (T)n Simple_repeat Simple_repeat 1 20 0 209 362 59 20 chr11 25586919 25587071 -123196401 + MIR SINE MIR 20 177 -85 1634 142 72 48 chr11 25587552 25587883 -123195589 - MER44D DNA MER2_type 0 609 1 2007 149 37 0 chr11 25588168 25588491 -123194981 + MER1B DNA MER1_type 1 335 -2 925 236 161 41 chr11 25588960 25589286 -123194186 - MLT1D LTR MaLR 0 505 119 802 271 83 20 chr11 25589286 25589636 -123193836 + MLT1A2 LTR MaLR 3 374 0 925 236 161 41 chr11 25589636 25589720 -123193752 - MLT1D LTR MaLR -386 119 46 214 131 0 66 chr11 25590185 25590307 -123193165 + (TA)n Simple_repeat Simple_repeat 1 114 0 326 284 23 0 chr11 25590361 25590449 -123193023 + L1MC4 LINE L1 6614 6703 -1339 5075 34 2 5 chr11 25590781 25591400 -123192072 + L1PA4 LINE L1 5539 6155 0 22 56 0 0 chr11 25592940 25592976 -123190496 + AT_rich Low_complexity Low_complexity 1 36 0 366 146 0 0 chr11 25593503 25593585 -123189887 + (T)n Simple_repeat Simple_repeat 1 82 0 983 251 36 4 chr11 25594037 25594288 -123189184 - AluJo SINE Alu -53 259 1 256 62 21 21 chr11 25594981 25595029 -123188443 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 207 0 0 0 chr11 25595621 25595644 -123187828 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 30 0 0 0 chr11 25595987 25596017 -123187455 + AT_rich Low_complexity Low_complexity 1 30 0 2487 55 0 10 chr11 25596469 25596781 -123186691 - AluY SINE Alu -2 309 1 1118 57 0 0 chr11 25597375 25597515 -123185957 + AluY SINE Alu 163 302 -9 434 307 12 54 chr11 25598465 25598631 -123184841 + MER5B DNA MER1_type 1 159 -19 181 256 0 0 chr11 25598662 25598705 -123184767 + MER5B DNA MER1_type 25 67 -111 421 227 84 40 chr11 25599561 25599793 -123183679 - L1MB7 LINE L1 -1 6183 5951 875 247 32 4 chr11 25599795 25600046 -123183426 - L1MB7 LINE L1 -342 5824 5567 940 262 80 34 chr11 25600077 25600463 -123183009 - L1MCa LINE L1 -6005 421 18 1463 230 142 64 chr11 25600468 25600887 -123182585 - L1MB7 LINE L1 -963 5183 4798 352 62 0 125 chr11 25600887 25600967 -123182505 - L1MA2 LINE L1 0 6304 6235 1463 230 142 64 chr11 25600967 25601168 -123182304 - L1MB7 LINE L1 -1348 4798 4614 2363 87 0 0 chr11 25601168 25601477 -123181995 - AluSc SINE Alu 0 309 1 1463 230 142 64 chr11 25601477 25601671 -123181801 - L1MB7 LINE L1 -1532 4614 4304 191 369 49 49 chr11 25601674 25601899 -123181573 + L3 LINE CR1 905 1129 -448 270 355 64 6 chr11 25601966 25602138 -123181334 + MIR SINE MIR 66 247 -15 260 321 0 47 chr11 25602294 25602400 -123181072 + L3 LINE CR1 1282 1382 -195 1078 105 21 26 chr11 25602564 25602755 -123180717 + AluSc SINE Alu 59 248 -61 24 32 0 0 chr11 25602795 25602826 -123180646 + AT_rich Low_complexity Low_complexity 1 31 0 204 238 0 0 chr11 25604351 25604393 -123179079 - MIR SINE MIR -81 127 86 360 319 47 61 chr11 25605643 25605837 -123177635 - MIR SINE MIR -6 256 64 1775 200 22 8 chr11 25605837 25606197 -123177275 - MLT1A1 LTR MaLR 0 365 1 360 319 47 61 chr11 25606197 25606215 -123177257 - MIR SINE MIR -198 64 47 259 256 0 35 chr11 25606464 25606550 -123176922 + CT-rich Low_complexity Low_complexity 1 83 0 194 328 79 34 chr11 25606705 25606853 -123176619 - MIR SINE MIR -53 155 1 197 223 10 48 chr11 25607788 25607891 -123175581 + GA-rich Low_complexity Low_complexity 4 102 0 1716 187 6 16 chr11 25607990 25608305 -123175167 + AluJb SINE Alu 1 312 0 1093 214 0 0 chr11 25608841 25609047 -123174425 - MER2 DNA MER2_type -139 206 1 230 262 127 40 chr11 25609463 25609589 -123173883 - MIR SINE MIR -13 249 113 223 250 162 34 chr11 25610380 25610528 -123172944 - L3 LINE CR1 -159 1418 1252 222 359 11 0 chr11 25610869 25610961 -123172511 + L2 LINE L2 3170 3262 -10 325 299 94 0 chr11 25611095 25611222 -123172250 - MIR SINE MIR -49 213 75 2355 96 14 0 chr11 25612869 25613225 -123170247 - L1PA7 LINE L1 -790 5356 4996 5832 70 14 8 chr11 25613225 25614020 -123169452 + L1PA7 LINE L1 5354 6154 0 22 35 0 0 chr11 25614862 25614891 -123168581 + AT_rich Low_complexity Low_complexity 1 29 0 243 343 90 18 chr11 25614915 25615132 -123168340 + MIR SINE MIR 20 255 -7 566 218 269 35 chr11 25616093 25616290 -123167182 - MLT1E1 LTR MaLR -405 249 7 425 19 19 0 chr11 25616450 25616504 -123166968 + (TG)n Simple_repeat Simple_repeat 2 56 0 939 58 0 0 chr11 25616972 25617093 -123166379 + L1PA4 LINE L1 6032 6152 -3 1507 76 0 0 chr11 25617319 25617516 -123165956 + L1PA5 LINE L1 5955 6151 -3 31 26 0 0 chr11 25617516 25617554 -123165918 + AT_rich Low_complexity Low_complexity 1 38 0 386 346 23 8 chr11 25617729 25617859 -123165613 - MIR SINE MIR -108 154 23 498 283 58 31 chr11 25617899 25618090 -123165382 + L2 LINE L2 3116 3311 -2 683 258 51 36 chr11 25618597 25618872 -123164600 - LTR4 LTR ERV1 0 596 318 506 255 15 60 chr11 25619064 25619264 -123164208 - LTR4 LTR ERV1 -396 200 10 342 360 104 9 chr11 25619539 25619750 -123163722 - MIR SINE MIR -20 242 12 23 33 0 0 chr11 25621120 25621150 -123162322 + AT_rich Low_complexity Low_complexity 1 30 0 35 24 0 0 chr11 25621667 25621709 -123161763 + AT_rich Low_complexity Low_complexity 1 42 0 1543 158 0 99 chr11 25621709 25622032 -123161440 - AluJb SINE Alu -21 291 1 649 194 13 0 chr11 25622216 25622371 -123161101 + GA-rich Low_complexity Low_complexity 3 159 0 189 94 0 0 chr11 25622421 25622453 -123161019 + (T)n Simple_repeat Simple_repeat 1 32 0 2217 72 11 0 chr11 25623147 25623483 -123159989 - AluY SINE Alu 0 339 1 333 248 104 24 chr11 25625796 25625921 -123157551 + Tigger5 DNA MER2_type 1 135 -2188 1013 179 18 28 chr11 25625922 25626140 -123157332 + Tigger5 DNA MER2_type 2105 2320 -3 2302 88 3 13 chr11 25626717 25627024 -123156448 - AluSq SINE Alu -9 304 1 295 279 77 0 chr11 25628515 25628558 -123154914 + L2 LINE L2 3201 3239 -74 484 145 30 46 chr11 25628558 25628689 -123154783 - L1MA7 LINE L1 0 6291 6163 295 279 77 0 chr11 25628689 25628749 -123154723 + L2 LINE L2 3239 3312 -1 183 129 0 0 chr11 25628879 25628910 -123154562 + (T)n Simple_repeat Simple_repeat 1 31 0 2258 60 3 3 chr11 25629237 25629550 -123153922 - AluY SINE Alu 0 313 1 247 289 36 12 chr11 25629737 25629820 -123153652 - L2 LINE L2 0 3313 3229 * 465 324 46 33 chr11 25629818 25630059 -123153413 - MIR SINE MIR -6 256 13 29 47 0 0 chr11 25630134 25630177 -123153295 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr11 25632278 25632306 -123151166 + AT_rich Low_complexity Low_complexity 1 28 0 343 319 96 26 chr11 25632865 25633094 -123150378 + MIR SINE MIR 15 259 -3 273 29 0 0 chr11 25633187 25633221 -123150251 + (TG)n Simple_repeat Simple_repeat 1 34 0 996 293 51 32 chr11 25634263 25634781 -123148691 + L2 LINE L2 2608 3138 -175 317 96 0 19 chr11 25635539 25635591 -123147881 - MADE1 DNA Mariner -29 51 1 184 303 182 0 chr11 25636162 25636261 -123147211 + L2 LINE L2 2701 2817 -497 1610 301 65 18 chr11 25636290 25636613 -123146859 + L1M4 LINE L1 3553 3859 -2287 2568 36 3 7 chr11 25636613 25636920 -123146552 + AluY SINE Alu 1 306 -5 1610 301 65 18 chr11 25636920 25637583 -123145889 + L1M4 LINE L1 3859 4585 -1561 210 133 67 17 chr11 25638200 25638260 -123145212 + (TTATA)n Simple_repeat Simple_repeat 1 63 0 284 313 24 0 chr11 25638289 25638372 -123145100 - MIR SINE MIR -144 118 34 22 80 0 0 chr11 25638449 25638499 -123144973 + AT_rich Low_complexity Low_complexity 1 50 0 181 303 15 15 chr11 25639515 25639581 -123143891 - MIR SINE MIR -82 180 115 647 295 124 5 chr11 25639589 25639806 -123143666 + MER92C LTR ERV1 1 243 -311 440 267 55 24 chr11 25639857 25640022 -123143450 + MER92C LTR ERV1 383 552 -2 180 0 0 0 chr11 25640537 25640557 -123142915 + (A)n Simple_repeat Simple_repeat 1 20 0 1193 161 274 9 chr11 25640557 25640874 -123142598 - MSTA LTR MaLR -27 401 1 2080 153 11 19 chr11 25640985 25641363 -123142109 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr11 25642236 25642266 -123141206 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 25642420 25642454 -123141018 + AT_rich Low_complexity Low_complexity 1 34 0 411 318 42 21 chr11 25642982 25643171 -123140301 - L2 LINE L2 -440 2874 2682 193 119 48 0 chr11 25643345 25643387 -123140085 + (TA)n Simple_repeat Simple_repeat 2 45 0 1472 198 27 34 chr11 25643591 25643889 -123139583 - AluJo SINE Alu -16 296 1 597 163 0 0 chr11 25644076 25644168 -123139304 + MLT1A1 LTR MaLR 2 93 -272 288 0 0 0 chr11 25644205 25644237 -123139235 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 81 0 0 chr11 25645579 25645641 -123137831 + AT_rich Low_complexity Low_complexity 1 62 0 1280 94 133 0 chr11 25645966 25646169 -123137303 - MER30 DNA MER1_type 0 230 1 300 320 111 57 chr11 25646170 25646414 -123137058 - L1MC/D LINE L1 -2065 5743 5487 21 71 0 0 chr11 25646461 25646503 -123136969 + AT_rich Low_complexity Low_complexity 1 42 0 1306 194 76 0 chr11 25646816 25647079 -123136393 + AluJo SINE Alu 5 287 -25 30 0 0 0 chr11 25647079 25647109 -123136363 + AT_rich Low_complexity Low_complexity 1 30 0 713 185 8 0 chr11 25647111 25647241 -123136231 + FLAM_C SINE Alu 1 131 -2 23 33 0 0 chr11 25647732 25647762 -123135710 + AT_rich Low_complexity Low_complexity 1 30 0 2908 190 47 72 chr11 25647911 25648949 -123134523 - L1MB8 LINE L1 -1 6177 5149 384 261 39 13 chr11 25648949 25649102 -123134370 - L1MB8 LINE L1 -3798 2348 2192 1097 191 53 114 chr11 25649128 25649489 -123133983 + MLT1A1 LTR MaLR 19 357 -8 718 307 59 32 chr11 25649496 25650271 -123133201 - L1MEc LINE L1 -4121 2275 1480 1845 177 122 8 chr11 25650363 25650747 -123132725 - MSTA LTR MaLR 0 428 1 7938 199 21 12 chr11 25650747 25652383 -123131089 - MSTA-int LTR MaLR 0 1651 1 1678 154 171 14 chr11 25652390 25652740 -123130732 - MSTA LTR MaLR -14 414 10 324 297 67 41 chr11 25652744 25653110 -123130362 - L1MEc LINE L1 -5016 1380 953 522 189 11 0 chr11 25654011 25654101 -123129371 + AluJ/FLAM SINE Alu 1 91 -221 294 328 38 8 chr11 25654366 25654497 -123128975 + L2 LINE L2 3167 3301 -12 257 297 69 10 chr11 25654935 25655036 -123128436 + MIR3 SINE MIR 93 199 -9 1097 157 35 5 chr11 25655222 25655419 -123128053 - L1PA16 LINE L1 0 6166 5964 5354 202 19 28 chr11 25655420 25657341 -123126131 - L1PA16 LINE L1 -330 5836 3934 24 0 0 0 chr11 25657351 25657375 -123126097 + AT_rich Low_complexity Low_complexity 1 24 0 3023 247 102 61 chr11 25658196 25658904 -123124568 - L1MC4a LINE L1 0 7808 7131 200 35 35 0 chr11 25658904 25658933 -123124539 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3023 247 102 61 chr11 25658933 25659243 -123124229 - L1MC4a LINE L1 -677 7131 6835 2829 16 0 0 chr11 25659243 25659561 -123123911 + AluYb8 SINE Alu 1 318 0 3023 247 102 61 chr11 25659561 25659988 -123123484 - L1MC4a LINE L1 -973 6835 6302 2497 48 0 3 chr11 25661065 25661377 -123122095 + AluY SINE Alu 1 311 0 333 100 0 0 chr11 25661963 25662013 -123121459 + (TG)n Simple_repeat Simple_repeat 1 50 0 394 240 136 45 chr11 25662861 25663015 -123120457 + MIR SINE MIR 20 187 -75 348 293 62 16 chr11 25663790 25663922 -123119550 + MIR3 SINE MIR 25 165 -43 317 322 55 33 chr11 25664682 25664865 -123118607 + MIR SINE MIR 10 196 -66 2937 300 67 20 chr11 25666117 25667275 -123116197 - ERVL LTR ERVL -2232 3532 2320 1527 311 104 45 chr11 25667316 25668176 -123115296 - ERVL LTR ERVL -3469 2224 1267 1872 133 61 19 chr11 25668176 25668536 -123114936 - THE1C LTR MaLR 0 375 1 1527 311 104 45 chr11 25668536 25668585 -123114887 - ERVL LTR ERVL -4426 1267 1222 423 325 89 0 chr11 25668589 25668780 -123114692 + MER3 DNA MER1_type 2 209 0 1685 294 47 26 chr11 25669094 25669709 -123113763 - MLT2E LTR ERVL 0 628 1 435 349 92 4 chr11 25670682 25670911 -123112561 + MIR SINE MIR 14 262 0 225 239 310 21 chr11 25671988 25672130 -123111342 - MIR3 SINE MIR -3 205 23 246 128 0 0 chr11 25672368 25672407 -123111065 + (T)n Simple_repeat Simple_repeat 1 39 0 847 226 58 0 chr11 25672418 25672608 -123110864 - MLT1B LTR MaLR -176 214 14 371 292 0 0 chr11 25672617 25672706 -123110766 - MLT1J LTR MaLR -292 219 131 3019 42 3 9 chr11 25673466 25673856 -123109616 + L1PA7 LINE L1 5766 6151 -3 28 29 0 0 chr11 25673928 25673963 -123109509 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr11 25674009 25674054 -123109418 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr11 25674241 25674273 -123109199 + AT_rich Low_complexity Low_complexity 1 32 0 294 106 0 0 chr11 25674278 25674325 -123109147 + (T)n Simple_repeat Simple_repeat 1 47 0 4545 201 38 9 chr11 25674334 25675464 -123108008 - L1MC1 LINE L1 -178 6435 5255 387 0 0 0 chr11 25675464 25675507 -123107965 + (TG)n Simple_repeat Simple_repeat 2 44 0 4545 201 38 9 chr11 25675507 25675847 -123107625 - L1MC1 LINE L1 -1358 5255 4926 3008 251 35 48 chr11 25675874 25676847 -123106625 - L1MC1 LINE L1 -2338 4088 3130 2094 64 37 3 chr11 25676847 25677145 -123106327 - L1PA10 LINE L1 -3 6165 5858 3008 251 35 48 chr11 25677145 25677273 -123106199 - L1MC1 LINE L1 -3296 3130 3002 * 6656 242 47 47 chr11 25677271 25679903 -123103569 - L1MB2 LINE L1 -163 6008 3377 2222 105 0 3 chr11 25679903 25680208 -123103264 - AluSx SINE Alu 0 312 9 6656 242 47 47 chr11 25680208 25680960 -123102512 - L1MB2 LINE L1 -2794 3377 2627 674 180 29 100 chr11 25680948 25681187 -123102285 - L1MC1 LINE L1 -5316 1110 889 * 2178 165 8 3 chr11 25681188 25681545 -123101927 + THE1B LTR MaLR 6 364 0 1600 123 8 0 chr11 25681545 25681796 -123101676 + THE1B-int LTR MaLR 1 253 -1327 1318 253 115 10 chr11 25681798 25682197 -123101275 - L1MC1 LINE L1 -5945 481 41 180 111 0 0 chr11 25682864 25682891 -123100581 + (TG)n Simple_repeat Simple_repeat 2 28 0 245 222 0 22 chr11 25683016 25683106 -123100366 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1513 185 105 3 chr11 25683120 25683434 -123100038 - MER7A DNA MER2_type 0 346 3 304 372 67 12 chr11 25685073 25685138 -123098334 + MER5A DNA MER1_type 10 70 -119 1961 125 34 3 chr11 25685138 25685266 -123098206 + AluSx SINE Alu 1 124 -188 378 0 0 0 chr11 25685266 25685308 -123098164 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1961 125 34 3 chr11 25685308 25685474 -123097998 + AluSx SINE Alu 124 304 -8 304 372 67 12 chr11 25685474 25685572 -123097900 + MER5A DNA MER1_type 70 182 -7 432 344 147 36 chr11 25685583 25686051 -123097421 - L3 LINE CR1 -83 1494 975 31 76 0 0 chr11 25687165 25687231 -123096241 + AT_rich Low_complexity Low_complexity 1 66 0 37161 35 24 1 chr11 25687231 25692650 -123090822 - L1PA3 LINE L1 -4 6151 606 208 261 45 23 chr11 25692902 25692990 -123090482 + L2 LINE L2 3183 3272 0 686 185 14 11 chr11 25694005 25694291 -123089181 + GA-rich Low_complexity Low_complexity 1 287 0 344 331 124 0 chr11 25695040 25695185 -123088287 + MER5A DNA MER1_type 26 188 -1 194 344 11 43 chr11 25696061 25696154 -123087318 + MIR SINE MIR 51 140 -122 547 176 35 99 chr11 25696518 25696660 -123086812 + LTR8A LTR ERV1 595 727 0 573 328 21 16 chr11 25696660 25696852 -123086620 + HUERS-P1 LTR ERV1 1 193 -6070 715 168 54 18 chr11 25696853 25697020 -123086452 - L1M3 LINE L1 -686 5482 5310 846 227 0 0 chr11 25697020 25697196 -123086276 - L1M3 LINE L1 -1123 5023 4848 908 346 29 48 chr11 25697197 25697555 -123085917 - L1M3d LINE L1 -5380 511 165 1636 175 0 55 chr11 25697555 25697881 -123085591 - AluJb SINE Alu -4 308 1 908 346 29 48 chr11 25697881 25698042 -123085430 - L1M3d LINE L1 -5726 165 2 27 49 0 0 chr11 25698087 25698128 -123085344 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr11 25698251 25698294 -123085178 + AT_rich Low_complexity Low_complexity 1 43 0 4496 196 21 2 chr11 25698487 25699383 -123084089 - L1MA4A LINE L1 -4 6299 5387 5965 150 30 23 chr11 25700177 25700354 -123083118 - L1MA2 LINE L1 0 7723 7549 5221 128 18 0 chr11 25700354 25701453 -123082019 - L1PA10 LINE L1 -2 6166 5055 5965 150 30 23 chr11 25701453 25703194 -123080278 - L1MA2 LINE L1 -174 7549 5791 17605 179 33 42 chr11 25703218 25706690 -123076782 - L1MA2 LINE L1 -3695 3870 368 271 0 25 25 chr11 25706690 25706730 -123076742 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 17605 179 33 42 chr11 25706730 25706873 -123076599 - L1MA2 LINE L1 -7197 368 225 430 103 0 0 chr11 25706873 25706941 -123076531 - MER41B LTR ERV1 -87 548 481 17605 179 33 42 chr11 25706941 25707141 -123076331 - L1MA2 LINE L1 -7340 225 17 2044 113 3 0 chr11 25707153 25707470 -123076002 - AluY SINE Alu 0 318 1 192 40 0 0 chr11 25708896 25708921 -123074551 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1516 175 11 28 chr11 25708922 25709208 -123074264 - AluJo SINE Alu -31 281 1 252 291 62 88 chr11 25709580 25709788 -123073684 + MIR SINE MIR 22 214 -48 189 275 0 0 chr11 25709794 25709834 -123073638 - MIR SINE MIR -72 190 151 255 267 47 0 chr11 25709841 25709927 -123073545 - L1MA4A LINE L1 -23 6280 6191 4196 182 23 23 chr11 25709932 25709974 -123073498 - L1MA4A LINE L1 -181 6122 6082 2863 97 68 0 chr11 25709974 25710398 -123073074 - MLT2A2 LTR ERVL 0 453 1 4196 182 23 23 chr11 25710398 25711782 -123071690 - L1MA4A LINE L1 -221 6082 4696 1475 173 26 29 chr11 25711819 25712125 -123071347 - L1PA15 LINE L1 -3 6162 5858 2402 126 70 7 chr11 25712152 25712566 -123070906 - L1PA14 LINE L1 -250 5911 5472 6469 48 0 1 chr11 25712678 25713488 -123069984 - L1PA14 LINE L1 -853 5293 4485 4510 238 101 86 chr11 25713527 25715922 -123067550 - L1PA15-16 LINE L1 -964 5885 3529 326 98 0 16 chr11 25715922 25715983 -123067489 + (TA)n Simple_repeat Simple_repeat 2 61 0 4510 238 101 86 chr11 25715983 25716545 -123066927 - L1PA15-16 LINE L1 -3320 3529 2977 207 0 0 0 chr11 25716545 25716568 -123066904 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4510 238 101 86 chr11 25716568 25717428 -123066044 - L1PA15-16 LINE L1 -3872 2977 2136 1948 142 33 0 chr11 25717428 25717731 -123065741 - AluSq SINE Alu 0 313 1 4510 238 101 86 chr11 25717731 25717828 -123065644 - L1PA15-16 LINE L1 -4713 2136 2042 1032 93 20 0 chr11 25717829 25717979 -123065493 - MER75 DNA T2_type -1 503 351 1860 152 17 0 chr11 25717983 25718279 -123065193 - AluSx SINE Alu -7 305 5 1140 249 9 0 chr11 25718286 25718612 -123064860 - L1M2 LINE L1 -4943 1906 1578 1414 145 29 13 chr11 25718622 25718878 -123064594 - L1PA10 LINE L1 0 6163 5897 799 53 0 18 chr11 25718876 25718990 -123064482 + L1P LINE L1 5254 5365 -766 * 3202 318 11 58 chr11 25718971 25720374 -123063098 - L1M2 LINE L1 -5249 1600 264 529 278 60 0 chr11 25720387 25720538 -123062934 - MIR SINE MIR -99 163 4 33 25 0 0 chr11 25720831 25720871 -123062601 + AT_rich Low_complexity Low_complexity 1 40 0 254 308 67 33 chr11 25722004 25722124 -123061348 + LTR16A LTR ERVL 94 217 -233 755 321 91 45 chr11 25722277 25722850 -123060622 + HERVL LTR ERVL 109 707 -4289 599 308 66 0 chr11 25722998 25723209 -123060263 + HERVL LTR ERVL 901 1125 -3871 1006 303 85 93 chr11 25723283 25724309 -123059163 + HERVL LTR ERVL 1219 2236 -2760 1568 349 45 29 chr11 25724942 25726036 -123057436 + HERVL LTR ERVL 3724 4834 -820 402 359 58 22 chr11 25726602 25726914 -123056558 + LTR16A LTR ERVL 21 343 -107 4126 180 46 58 chr11 25727069 25728368 -123055104 - L1MA4 LINE L1 -6 6294 5007 286 321 60 11 chr11 25728502 25728686 -123054786 - MER76 LTR ERV -33 655 463 7948 208 11 21 chr11 25729433 25731290 -123052182 - L1 LINE L1 -836 5310 3472 321 115 0 0 chr11 25731734 25731786 -123051686 - L1M LINE L1 -941 5364 5313 956 139 23 0 chr11 25731786 25731959 -123051513 + L1MA1 LINE L1 6006 6182 -120 338 136 0 0 chr11 25731961 25732020 -123051452 + L1MA2 LINE L1 6246 6304 0 22 0 0 0 chr11 25733509 25733531 -123049941 + AT_rich Low_complexity Low_complexity 1 22 0 1125 173 13 4 chr11 25735019 25735244 -123048228 + L1MA4 LINE L1 5644 5870 -430 477 334 46 84 chr11 25735270 25735617 -123047855 - L2 LINE L2 -10 3262 2929 246 32 0 0 chr11 25735700 25735731 -123047741 + (TA)n Simple_repeat Simple_repeat 1 31 0 512 289 89 67 chr11 25735871 25736377 -123047095 - LTR33 LTR ERVL 0 521 5 23 54 0 0 chr11 25737427 25737464 -123046008 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr11 25738848 25738870 -123044602 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 25738885 25738906 -123044566 + AT_rich Low_complexity Low_complexity 1 21 0 1410 185 70 0 chr11 25738917 25739160 -123044312 - AluSg SINE Alu -45 265 6 448 315 60 37 chr11 25739614 25740176 -123043296 - L1MEc LINE L1 -4576 1820 1246 540 199 44 72 chr11 25740282 25740483 -123042989 + L1MA8 LINE L1 6110 6312 0 216 182 23 0 chr11 25741210 25741254 -123042218 - L2 LINE L2 -4 3309 3265 295 315 134 35 chr11 25742473 25742705 -123040767 + MLT1L LTR MaLR 189 443 -172 7391 70 7 0 chr11 25742955 25744322 -123039150 - L1P2 LINE L1 -394 5760 4383 2512 153 44 12 chr11 25745023 25745526 -123037946 - L1MA4 LINE L1 0 6300 5782 311 179 9 0 chr11 25745526 25745632 -123037840 + (TA)n Simple_repeat Simple_repeat 1 107 0 2500 188 20 44 chr11 25745632 25746428 -123037044 - L1MA4 LINE L1 -508 5792 5006 395 323 59 5 chr11 25746556 25746742 -123036730 - MER76 LTR ERV -30 658 463 260 256 13 13 chr11 25747162 25747240 -123036232 - HERVL40 LTR ERVL -2249 3281 3204 189 0 0 0 chr11 25747981 25748002 -123035470 + (TG)n Simple_repeat Simple_repeat 1 21 0 558 280 0 0 chr11 25749499 25749617 -123033855 - FLAM_A SINE Alu -14 119 2 1042 277 87 25 chr11 25750259 25750663 -123032809 - L2 LINE L2 -1871 1443 1015 191 176 118 78 chr11 25750948 25750999 -123032473 + L2 LINE L2 3246 3298 -15 45 55 0 0 chr11 25751972 25752045 -123031427 + AT_rich Low_complexity Low_complexity 1 73 0 6636 114 31 15 chr11 25752381 25753435 -123030037 - MER11C LTR ERVK 0 1071 1 233 228 8 114 chr11 25753485 25753608 -123029864 - MIR SINE MIR -49 213 104 358 331 8 0 chr11 25753782 25753909 -123029563 - MIR SINE MIR -11 251 124 24 0 0 0 chr11 25754305 25754329 -123029143 + AT_rich Low_complexity Low_complexity 1 24 0 377 289 142 19 chr11 25754617 25754828 -123028644 + L2 LINE L2 2527 2763 -551 330 280 77 49 chr11 25755041 25755184 -123028288 - L1ME LINE L1 -5653 417 271 275 181 24 24 chr11 25755756 25755839 -123027633 - L1PA16 LINE L1 0 6166 6084 1520 121 23 19 chr11 25755939 25756196 -123027276 - L1PA16 LINE L1 -325 5841 5584 204 200 0 0 chr11 25756371 25756406 -123027066 + polypyrimidine Low_complexity Low_complexity 1 35 0 232 295 0 0 chr11 25757169 25757230 -123026242 + MER5A DNA MER1_type 129 189 0 230 217 0 0 chr11 25757278 25757324 -123026148 + L2 LINE L2 3268 3313 0 202 367 31 10 chr11 25758949 25759047 -123024425 - MIR3 SINE MIR -45 163 64 885 272 75 70 chr11 25759048 25759460 -123024012 + MLT2B1 LTR ERVL 3 416 -48 200 182 0 36 chr11 25759481 25759536 -123023936 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1516 189 0 82 chr11 25759772 25760137 -123023335 - MER7A DNA MER2_type -13 333 1 294 330 10 0 chr11 25760154 25760254 -123023218 + MER5A DNA MER1_type 9 109 -80 2205 152 11 3 chr11 25760915 25761276 -123022196 + THE1B LTR MaLR 1 364 0 1227 325 41 20 chr11 25761496 25761989 -123021483 + L1M3d LINE L1 8 510 -5381 * 2521 277 95 33 chr11 25761958 25763292 -123020180 + L1 LINE L1 255 1373 -4518 1906 256 10 4 chr11 25763304 25763796 -123019676 + L1 LINE L1 3429 3923 -2047 453 296 107 33 chr11 25763815 25764058 -123019414 + L2 LINE L2 3019 3279 -34 32 43 0 0 chr11 25764493 25764539 -123018933 + AT_rich Low_complexity Low_complexity 1 46 0 1590 248 8 86 chr11 25765330 25765475 -123017997 + MLT2B1 LTR ERVL 1 156 -364 2218 152 66 22 chr11 25765475 25765883 -123017589 - MSTA LTR MaLR 0 428 3 1590 248 8 86 chr11 25765883 25766258 -123017214 + MLT2B1 LTR ERVL 156 480 -40 1473 158 63 14 chr11 25766803 25767088 -123016384 - AluSc SINE Alu -1 308 10 762 283 61 24 chr11 25767959 25768206 -123015266 + MIR SINE MIR 7 262 0 25 0 0 0 chr11 25768334 25768359 -123015113 + AT_rich Low_complexity Low_complexity 1 25 0 205 325 121 0 chr11 25769504 25769587 -123013885 + L2 LINE L2 3206 3298 -15 315 212 0 0 chr11 25770297 25770382 -123013090 + (TA)n Simple_repeat Simple_repeat 2 86 0 332 229 0 62 chr11 25770384 25770480 -123012992 - L1MC4 LINE L1 -1339 6703 6614 198 174 0 0 chr11 25770488 25770534 -123012938 + (TA)n Simple_repeat Simple_repeat 2 47 0 332 229 0 62 chr11 25770540 25770636 -123012836 - L1MC4 LINE L1 -1339 6703 6614 327 171 0 0 chr11 25770642 25770718 -123012754 + (TA)n Simple_repeat Simple_repeat 2 77 0 338 300 0 0 chr11 25770720 25770810 -123012662 - L1MC4 LINE L1 -1339 6703 6614 486 197 0 0 chr11 25770815 25770952 -123012520 + (TA)n Simple_repeat Simple_repeat 2 138 0 474 170 0 0 chr11 25771664 25771758 -123011714 + G-rich Low_complexity Low_complexity 5 98 0 24 32 0 0 chr11 25772049 25772080 -123011392 + AT_rich Low_complexity Low_complexity 1 31 0 2059 110 14 0 chr11 25772161 25772453 -123011019 - AluSp SINE Alu -17 296 1 204 229 0 0 chr11 25772624 25772659 -123010813 - L2 LINE L2 -16 3297 3263 358 287 148 5 chr11 25773110 25773319 -123010153 - L1MEc LINE L1 -1395 4820 4582 9079 44 3 0 chr11 25773656 25775528 -123007944 + L1PA4 LINE L1 4272 6148 -7 32 0 0 0 chr11 25775528 25775560 -123007912 + AT_rich Low_complexity Low_complexity 1 32 0 1005 291 39 28 chr11 25775699 25776232 -123007240 - L1MEc LINE L1 -1817 4398 3860 1186 269 57 29 chr11 25776397 25777119 -123006353 - L1MEc LINE L1 -2840 3375 2634 1970 292 85 42 chr11 25777344 25778856 -123004616 - L1MEc LINE L1 -3639 2576 1000 1760 214 28 3 chr11 25778856 25779212 -123004260 - MLT1A1 LTR MaLR 0 365 1 1970 292 85 42 chr11 25779212 25779521 -123003951 - L1MEc LINE L1 -5215 1000 706 225 215 32 21 chr11 25780991 25781084 -123002388 + (TA)n Simple_repeat Simple_repeat 2 95 0 422 359 6 12 chr11 25781163 25781330 -123002142 - MIR SINE MIR -70 192 27 234 269 60 37 chr11 25781587 25781721 -123001751 + MIR SINE MIR 113 249 -13 377 351 0 8 chr11 25781933 25782067 -123001405 + MLT2E LTR ERVL 40 172 -456 495 0 0 0 chr11 25782120 25782175 -123001297 + (TA)n Simple_repeat Simple_repeat 2 56 0 1368 179 88 28 chr11 25782193 25782478 -123000994 + AluJo SINE Alu 1 302 -10 1136 102 11 0 chr11 25783219 25783396 -123000076 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 581 192 11 28 chr11 25783397 25783579 -122999893 + GA-rich Low_complexity Low_complexity 2 180 0 394 207 0 18 chr11 25783590 25783701 -122999771 + GA-rich Low_complexity Low_complexity 3 111 0 261 354 31 0 chr11 25784454 25784550 -122998922 + MER81 DNA DNA 16 114 0 1921 104 0 39 chr11 25784726 25785005 -122998467 - AluSx SINE Alu -44 268 1 28 48 0 0 chr11 25785092 25785134 -122998338 + AT_rich Low_complexity Low_complexity 1 42 0 232 271 73 10 chr11 25785553 25785649 -122997823 - L1ME LINE L1 -672 5449 5348 292 299 65 36 chr11 25786839 25786993 -122996479 + MIR SINE MIR 38 194 -67 197 323 152 0 chr11 25787227 25787326 -122996146 - MIR SINE MIR -60 148 35 23 33 0 0 chr11 25787907 25787937 -122995535 + AT_rich Low_complexity Low_complexity 1 30 0 1516 233 13 66 chr11 25788171 25788566 -122994906 + MLT1D LTR MaLR 130 503 -2 225 302 12 24 chr11 25788594 25788763 -122994709 + (TA)n Simple_repeat Simple_repeat 2 168 0 2158 152 17 8 chr11 25788887 25789248 -122994224 + THE1B LTR MaLR 1 364 0 3102 103 5 0 chr11 25789248 25789684 -122993788 + THE1B-int LTR MaLR 1 438 -1142 2085 164 27 15 chr11 25789677 25790502 -122992970 + L1PB4 LINE L1 4802 6147 -9 * 2085 188 40 2 chr11 25790502 25790932 -122992540 + L1PB4 LINE L1 5706 6151 -5 488 320 59 68 chr11 25791073 25791498 -122991974 + L2 LINE L2 2876 3296 -17 198 71 0 0 chr11 25792460 25792488 -122990984 + (TG)n Simple_repeat Simple_repeat 2 29 0 227 354 91 0 chr11 25793737 25793836 -122989636 + L2 LINE L2 3147 3254 -18 2245 173 25 0 chr11 25793979 25794383 -122989089 - L1PBa LINE L1 -5814 1049 636 1071 184 20 0 chr11 25794385 25794581 -122988891 - L1PBa LINE L1 -6663 200 1 266 147 0 40 chr11 25794619 25794694 -122988778 - L1 LINE L1 -2999 3147 3076 687 239 29 13 chr11 25794827 25795066 -122988406 - L1 LINE L1 -3123 3023 2781 626 94 10 0 chr11 25795067 25795163 -122988309 + L1PB2 LINE L1 6055 6151 0 1390 113 31 0 chr11 25795186 25795408 -122988064 - L1PA15-16 LINE L1 -4870 1979 1751 * 1496 168 0 0 chr11 25795406 25795632 -122987840 - L1PA15-16 LINE L1 -6621 228 3 1564 150 91 28 chr11 25796134 25796487 -122986985 + THE1C LTR MaLR 1 375 0 266 391 78 0 chr11 25796742 25796921 -122986551 + L2 LINE L2 2824 3016 -297 964 136 6 6 chr11 25797142 25797319 -122986153 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 273 297 55 31 chr11 25798498 25798626 -122984846 - MLT1I LTR MaLR -266 143 13 464 284 8 0 chr11 25798992 25799126 -122984346 + MLT1J LTR MaLR 78 212 -299 498 165 12 0 chr11 25799352 25799437 -122984035 + AluS SINE Alu 1 86 -226 185 196 18 0 chr11 25800255 25800311 -122983161 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 185 353 191 7 chr11 25800317 25800453 -122983019 - MIR SINE MIR -68 194 34 429 350 39 10 chr11 25800714 25800920 -122982552 - MIR SINE MIR 0 262 51 221 261 65 33 chr11 25800904 25800996 -122982476 + MIR SINE MIR 93 187 -75 * 255 222 25 12 chr11 25801492 25801573 -122981899 + (TA)n Simple_repeat Simple_repeat 1 82 0 188 379 0 23 chr11 25801687 25801774 -122981698 + MIR SINE MIR 8 92 -170 32 101 0 0 chr11 25801920 25802029 -122981443 + AT_rich Low_complexity Low_complexity 1 109 0 23 54 0 0 chr11 25802278 25802315 -122981157 + AT_rich Low_complexity Low_complexity 1 37 0 636 338 39 25 chr11 25802646 25803001 -122980471 + L2 LINE L2 2447 2806 -508 181 368 78 17 chr11 25803069 25803300 -122980172 + L2 LINE L2 3032 3276 -37 287 360 54 22 chr11 25803337 25803559 -122979913 - MIR SINE MIR -31 231 3 198 0 0 0 chr11 25805511 25805533 -122977939 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 438 36 0 0 chr11 25805532 25805588 -122977884 + (TC)n Simple_repeat Simple_repeat 2 57 0 196 203 31 94 chr11 25805976 25806040 -122977432 + L3 LINE CR1 1510 1569 -8 2776 170 7 37 chr11 25807553 25808146 -122975326 - L1MA6 LINE L1 0 6300 5726 21 0 0 0 chr11 25808209 25808230 -122975242 + AT_rich Low_complexity Low_complexity 1 21 0 297 89 0 0 chr11 25808414 25808459 -122975013 + (TG)n Simple_repeat Simple_repeat 2 46 0 218 276 0 0 chr11 25809342 25809397 -122974075 + MIR SINE MIR 97 145 -63 21 0 0 0 chr11 25809452 25809473 -122973999 + AT_rich Low_complexity Low_complexity 1 21 0 583 155 10 0 chr11 25809845 25809942 -122973530 - AluJ/FLAM SINE Alu -214 98 1 202 327 45 64 chr11 25810178 25810334 -122973138 - L2 LINE L2 -223 3049 2897 3332 137 0 8 chr11 25811132 25811644 -122971828 - MER9 LTR ERVK 0 511 4 462 100 7 93 chr11 25811876 25812016 -122971456 - MER9 LTR ERVK -383 128 1 606 89 0 0 chr11 25812993 25813083 -122970389 + (TC)n Simple_repeat Simple_repeat 1 90 0 388 296 120 9 chr11 25813529 25813762 -122969710 + MER110A LTR ERV1 28 286 -182 2248 249 30 2 chr11 25813762 25814305 -122969167 + MER90 LTR ERV1 10 567 -8 23 33 0 0 chr11 25814610 25814640 -122968832 + AT_rich Low_complexity Low_complexity 1 30 0 2254 81 0 3 chr11 25814714 25815010 -122968462 - AluY SINE Alu -16 295 1 390 333 61 17 chr11 25815025 25815256 -122968216 + L2 LINE L2 2736 2976 -338 23 0 0 0 chr11 25815408 25815431 -122968041 + AT_rich Low_complexity Low_complexity 1 23 0 2045 122 17 0 chr11 25815546 25815834 -122967638 + AluSx SINE Alu 1 293 -19 267 360 9 9 chr11 25816939 25817050 -122966422 + MIR3 SINE MIR 65 175 -33 22 0 0 0 chr11 25817114 25817136 -122966336 + AT_rich Low_complexity Low_complexity 1 22 0 435 270 71 16 chr11 25817374 25817500 -122965972 - L2 LINE L2 -1 3312 3180 280 291 27 54 chr11 25817521 25817669 -122965803 + MLT1I LTR MaLR 28 171 -238 228 132 26 53 chr11 25819372 25819448 -122964024 + T-rich Low_complexity Low_complexity 3 76 0 255 31 0 0 chr11 25819879 25819911 -122963561 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2051 133 0 10 chr11 25821606 25821906 -122961566 - AluSx SINE Alu -15 297 1 214 167 0 0 chr11 25822154 25822196 -122961276 + (CAT)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr11 25822258 25822285 -122961187 + (TA)n Simple_repeat Simple_repeat 1 27 0 5281 60 3 0 chr11 25822287 25822959 -122960513 - L1PA5 LINE L1 -6 6148 5475 34551 48 3 2 chr11 25822967 25829119 -122954353 - L1PA3 LINE L1 0 6155 1 1754 75 16 0 chr11 25829086 25829421 -122954051 - L1P2 LINE L1 -628 5526 5187 * 6278 73 22 0 chr11 25829421 25830285 -122953187 + L1P LINE L1 3158 4040 -2106 1597 199 17 3 chr11 25830541 25830838 -122952634 + AluJo SINE Alu 1 301 -11 12171 174 24 9 chr11 25830878 25833106 -122950366 - Tigger1 DNA MER2_type -3 2415 156 5791 217 40 25 chr11 25833246 25835714 -122947758 - L1 LINE L1 -3829 2499 1 22 35 0 0 chr11 25836176 25836205 -122947267 + AT_rich Low_complexity Low_complexity 1 29 0 213 243 186 0 chr11 25836585 25836655 -122946817 - MIR SINE MIR -67 195 113 683 312 34 15 chr11 25838010 25838279 -122945193 - LTR16B LTR ERVL 0 464 191 642 232 0 76 chr11 25838323 25838521 -122944951 + MLT1E2 LTR MaLR 1 183 -443 482 269 70 45 chr11 25838800 25839086 -122944386 + LTR52 LTR ERVL 1 293 -128 615 241 179 12 chr11 25839521 25839862 -122943610 - MER69 DNA AcHobo -113 2413 2016 661 321 154 31 chr11 25839870 25840230 -122943242 - MER69 DNA AcHobo -1961 565 130 1149 249 48 28 chr11 25840230 25840588 -122942884 + MLT1A1 LTR MaLR 1 365 0 661 321 154 31 chr11 25840588 25840707 -122942765 - MER69 DNA AcHobo -2396 130 27 1738 265 73 47 chr11 25841250 25842472 -122941000 - L1ME2 LINE L1 -106 6058 4668 * 10006 230 36 59 chr11 25842461 25843125 -122940347 + L1M2 LINE L1 85 763 -6085 1916 173 106 3 chr11 25843125 25843513 -122939959 + MSTA LTR MaLR 1 428 0 10006 230 36 59 chr11 25843513 25843673 -122939799 + L1M2 LINE L1 763 925 -5923 2279 91 0 10 chr11 25843673 25843980 -122939492 - AluSc SINE Alu -5 304 1 10006 230 36 59 chr11 25843980 25844007 -122939465 + L1M2 LINE L1 925 951 -5897 339 203 0 0 chr11 25844007 25844071 -122939401 + MSTA LTR MaLR 365 428 0 10006 230 36 59 chr11 25844071 25847626 -122935846 + L1M2 LINE L1 951 4449 -2399 7728 111 18 1 chr11 25847623 25848820 -122934652 - L1P LINE L1 -1918 4228 3011 * 6599 65 17 6 chr11 25848820 25850424 -122933048 + L1PA7 LINE L1 4539 6154 0 3264 160 34 184 chr11 25850432 25851405 -122932067 + L1M2 LINE L1 4477 5208 -1640 1322 229 10 17 chr11 25851405 25851702 -122931770 + AluJo SINE Alu 5 299 -13 3264 160 34 184 chr11 25851702 25852025 -122931447 + L1M2 LINE L1 5208 5578 -1270 1122 174 103 20 chr11 25852032 25852285 -122931187 + MSTA LTR MaLR 3 276 -152 * 2687 143 10 0 chr11 25852282 25852688 -122930784 + MSTA LTR MaLR 17 426 -2 1132 186 20 112 chr11 25852689 25853136 -122930336 + L1M2 LINE L1 5695 6100 -748 * 1754 187 42 21 chr11 25853133 25853652 -122929820 + L1MA4A LINE L1 5136 5664 -639 589 156 19 25 chr11 25853652 25853812 -122929660 + GA-rich Low_complexity Low_complexity 4 162 0 2857 178 23 22 chr11 25853822 25854467 -122929005 + L1MA4A LINE L1 5653 6298 -5 281 324 36 9 chr11 25854467 25854578 -122928894 - L2 LINE L2 -21 3292 3179 23 0 0 0 chr11 25854651 25854674 -122928798 + AT_rich Low_complexity Low_complexity 1 23 0 748 291 120 10 chr11 25854676 25855194 -122928278 - L1MEc LINE L1 -1455 5085 4511 1848 291 89 16 chr11 25855231 25856518 -122926954 - L1MEc LINE L1 -2105 4435 3054 539 306 49 24 chr11 25856558 25857009 -122926463 - L1MEc LINE L1 -3547 2993 2532 1405 213 35 23 chr11 25857011 25857248 -122926224 + MLT2C1 LTR ERVL 1 245 -152 2012 102 0 0 chr11 25857248 25857514 -122925958 + AluSg SINE Alu 39 304 -6 1405 213 35 23 chr11 25857514 25857619 -122925853 + MLT2C1 LTR ERVL 245 347 -50 418 298 120 58 chr11 25857715 25858165 -122925307 - L1MEc LINE L1 -4148 2573 2096 668 239 118 51 chr11 25858186 25858558 -122924914 - L1MEc LINE L1 -4695 1845 1449 1887 137 16 13 chr11 25859136 25859443 -122924029 - AluSq SINE Alu -5 308 1 23 33 0 0 chr11 25859448 25859478 -122923994 + AT_rich Low_complexity Low_complexity 1 30 0 589 253 141 12 chr11 25859488 25859737 -122923735 - LTR16A1 LTR ERVL -7 450 170 306 296 167 0 chr11 25861020 25861128 -122922344 + MIR SINE MIR 126 251 -11 606 385 31 8 chr11 25861731 25862115 -122921357 + MLT1K LTR MaLR 196 588 0 231 313 30 0 chr11 25862208 25862275 -122921197 - L2 LINE L2 -19 3294 3226 56 39 0 0 chr11 25862499 25862576 -122920896 + AT_rich Low_complexity Low_complexity 1 77 0 3952 159 25 6 chr11 25862713 25863443 -122920029 - L1MA4A LINE L1 -5 6298 5555 1022 193 7 93 chr11 25863452 25863721 -122919751 - L1M2 LINE L1 -6602 247 2 195 346 30 20 chr11 25863950 25864051 -122919421 - L2 LINE L2 -991 2323 2222 273 237 26 13 chr11 25864290 25864366 -122919106 - MIR SINE MIR -102 160 84 281 314 0 0 chr11 25864519 25864605 -122918867 - MER103 DNA DNA -77 89 4 1014 133 14 2 chr11 25864997 25865292 -122918180 + THE1C LTR MaLR 1 368 -7 9257 121 40 42 chr11 25865296 25866878 -122916594 + THE1C-int LTR MaLR 2 1580 0 2304 119 24 16 chr11 25866880 25867250 -122916222 + THE1C LTR MaLR 3 375 0 240 235 15 0 chr11 25867360 25867428 -122916044 + (TA)n Simple_repeat Simple_repeat 1 69 0 452 337 51 0 chr11 25867630 25867808 -122915664 - MIR SINE MIR -67 195 9 794 217 19 0 chr11 25868183 25868340 -122915132 + FAM SINE Alu 7 166 -19 30 0 0 0 chr11 25868892 25868922 -122914550 + AT_rich Low_complexity Low_complexity 1 30 0 1327 178 99 76 chr11 25869262 25869791 -122913681 + MER21B LTR ERV1 1 566 -297 1196 171 55 137 chr11 25869791 25870281 -122913191 - LTR7 LTR ERV1 0 450 1 3470 121 14 13 chr11 25870283 25870837 -122912635 - HERVH LTR ERV1 -2 7711 7157 * 13133 136 9 7 chr11 25870830 25873485 -122909987 - HERVH LTR ERV1 -1697 6016 3421 223 329 0 13 chr11 25873499 25873578 -122909894 - L2 LINE L2 -68 3245 3168 25 0 0 0 chr11 25873636 25873661 -122909811 + AT_rich Low_complexity Low_complexity 1 25 0 206 345 104 18 chr11 25874046 25874266 -122909206 + L2 LINE L2 2946 3184 -129 324 280 24 54 chr11 25874400 25874568 -122908904 + L2 LINE L2 3149 3311 -2 459 307 0 40 chr11 25874702 25874852 -122908620 + MIR SINE MIR 37 180 -82 1858 219 63 11 chr11 25875712 25875887 -122907585 + MLT1C LTR MaLR 1 165 -302 333 0 0 0 chr11 25875887 25875924 -122907548 + (CA)n Simple_repeat Simple_repeat 2 38 0 1858 219 63 11 chr11 25875924 25876190 -122907282 + MLT1C LTR MaLR 165 465 -2 186 43 0 0 chr11 25876479 25876502 -122906970 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 442 197 54 88 chr11 25876548 25876695 -122906777 + LTR56 LTR ERV1 1 142 -303 1837 154 18 0 chr11 25876767 25877052 -122906420 - AluSx SINE Alu -22 290 1 1127 190 86 55 chr11 25877066 25877392 -122906080 - MER4D LTR ERV1 0 903 568 22 35 0 0 chr11 25878381 25878410 -122905062 + AT_rich Low_complexity Low_complexity 1 29 0 1624 246 139 38 chr11 25878414 25879228 -122904244 - L1ME2 LINE L1 -12 6152 5257 235 297 0 0 chr11 25879256 25879320 -122904152 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1203 271 42 49 chr11 25879386 25880081 -122903391 - L1ME2 LINE L1 -1261 4885 4196 4504 181 31 23 chr11 25880482 25881423 -122902049 + L1MC1 LINE L1 5373 6320 -13 210 37 0 0 chr11 25881428 25881455 -122902017 + (TAA)n Simple_repeat Simple_repeat 2 28 0 268 254 51 136 chr11 25881998 25882175 -122901297 + MIR SINE MIR 17 178 -84 24 0 0 0 chr11 25882939 25882963 -122900509 + AT_rich Low_complexity Low_complexity 1 24 0 1820 32 0 0 chr11 25882963 25883184 -122900288 - L1PA5 LINE L1 -8 6146 5926 1605 22 0 0 chr11 25883184 25883369 -122900103 + L1PA5 LINE L1 5738 5922 -233 1760 169 26 0 chr11 25883369 25883641 -122899831 - AluJo SINE Alu -33 279 1 381 279 66 73 chr11 25883988 25884077 -122899395 + L2 LINE L2 3175 3264 -49 1846 141 7 42 chr11 25884077 25884383 -122899089 + AluSx SINE Alu 1 295 -17 381 279 66 73 chr11 25884383 25884429 -122899043 + L2 LINE L2 3264 3309 -4 223 297 29 94 chr11 25885226 25885364 -122898108 + L2 LINE L2 3140 3268 -4 200 224 0 35 chr11 25885623 25885681 -122897791 + CT-rich Low_complexity Low_complexity 1 56 0 2041 124 3 7 chr11 25885769 25886075 -122897397 + AluSg SINE Alu 1 305 -5 514 254 8 0 chr11 25886814 25886944 -122896528 - MER103 DNA DNA -2 164 34 1133 329 49 40 chr11 25887269 25887902 -122895570 + L2 LINE L2 2395 3030 -283 31 44 0 0 chr11 25887979 25888024 -122895448 + AT_rich Low_complexity Low_complexity 1 45 0 22 94 0 0 chr11 25888173 25888237 -122895235 + AT_rich Low_complexity Low_complexity 1 64 0 24 0 0 0 chr11 25888325 25888349 -122895123 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr11 25888497 25888526 -122894946 + AT_rich Low_complexity Low_complexity 1 29 0 5171 162 18 20 chr11 25888639 25889815 -122893657 - L1PA15 LINE L1 -1 6164 5002 16738 39 0 0 chr11 25889915 25892732 -122890740 + L1PA3 LINE L1 3335 6151 -4 199 303 0 53 chr11 25892936 25893012 -122890460 - MIR3 SINE MIR -27 181 110 508 14 0 28 chr11 25893199 25893270 -122890202 + (TTATA)n Simple_repeat Simple_repeat 2 70 0 676 290 29 14 chr11 25894392 25894599 -122888873 + MIR SINE MIR 12 221 -41 213 154 0 0 chr11 25894697 25894736 -122888736 + (CA)n Simple_repeat Simple_repeat 1 39 0 366 156 42 0 chr11 25894737 25894833 -122888639 + GA-rich Low_complexity Low_complexity 1 100 0 1966 167 13 93 chr11 25895623 25895686 -122887786 - L1P LINE L1 -1082 6502 6436 2106 128 0 10 chr11 25895686 25895999 -122887473 - AluSg SINE Alu 0 310 1 1966 167 13 93 chr11 25895999 25896461 -122887011 - L1P LINE L1 -1148 6436 6019 8353 263 39 27 chr11 25896468 25900820 -122882652 - L1PA12 LINE L1 -3167 4417 9 261 146 0 0 chr11 25900881 25900929 -122882543 + (TA)n Simple_repeat Simple_repeat 1 48 0 3591 162 49 10 chr11 25900966 25901683 -122881789 - Tigger3(Golem) DNA MER2_type 0 3029 2285 547 204 0 0 chr11 25901686 25901779 -122881693 - Tigger3(Golem) DNA MER2_type -2922 107 15 21 57 0 0 chr11 25901994 25902029 -122881443 + AT_rich Low_complexity Low_complexity 1 35 0 412 310 91 9 chr11 25902665 25902897 -122880575 - LTR33A LTR ERVL -11 512 262 253 271 17 17 chr11 25903104 25903163 -122880309 - L2 LINE L2 0 3272 3214 1061 326 58 30 chr11 25903796 25904332 -122879140 + MLT1H1 LTR MaLR 3 553 -2 1218 167 129 8 chr11 25904764 25905004 -122878468 + AluJo SINE Alu 13 281 -31 252 59 0 0 chr11 25905624 25905658 -122877814 + (TATG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 25906455 25906477 -122876995 + AT_rich Low_complexity Low_complexity 1 22 0 310 292 172 21 chr11 25907094 25907286 -122876186 - MLT1H1 LTR MaLR -2 553 333 250 227 15 0 chr11 25907403 25907469 -122876003 + L1MC4 LINE L1 6634 6700 -1342 1284 117 86 5 chr11 25907469 25907691 -122875781 - L1PA13 LINE L1 -8 6155 5916 718 130 52 9 chr11 25907695 25907810 -122875662 + L1PA12 LINE L1 11 130 -7451 21 0 0 0 chr11 25907893 25907914 -122875558 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 25909460 25909488 -122873984 + AT_rich Low_complexity Low_complexity 1 28 0 196 268 0 18 chr11 25910661 25910717 -122872755 - MIR SINE MIR -77 185 131 * 202 330 52 31 chr11 25910715 25910812 -122872660 + MIR SINE MIR 6 104 -158 28 48 0 0 chr11 25910959 25911001 -122872471 + AT_rich Low_complexity Low_complexity 1 42 0 189 213 133 27 chr11 25911228 25911303 -122872169 - MIR SINE MIR -57 205 123 2039 192 49 5 chr11 25911603 25912010 -122871462 - MSTA LTR MaLR -3 425 1 703 136 91 0 chr11 25912062 25912172 -122871300 + FLAM_C SINE Alu 3 122 -21 282 97 16 32 chr11 25912184 25912246 -122871226 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 830 161 24 81 chr11 25912853 25913122 -122870350 - L1M2 LINE L1 -744 5402 5206 1959 168 25 25 chr11 25913122 25913486 -122869986 - THE1B LTR MaLR 0 364 1 10674 112 3 33 chr11 25913486 25914136 -122869336 - THE1B-int LTR MaLR 0 1580 912 6954 52 9 6 chr11 25914136 25915628 -122867844 + L1PA5 LINE L1 4657 6151 -3 10674 112 3 33 chr11 25915628 25916606 -122866866 - THE1B-int LTR MaLR -668 912 1 1953 164 22 25 chr11 25916606 25916971 -122866501 - THE1B LTR MaLR 0 364 1 1719 212 46 23 chr11 25916972 25917410 -122866062 - L1M2 LINE L1 -937 5209 4762 1071 190 58 0 chr11 25917420 25917625 -122865847 + L1M3 LINE L1 5492 5708 -460 1631 180 7 14 chr11 25918166 25918455 -122865017 - AluJo SINE Alu -25 287 1 295 377 73 5 chr11 25918974 25919194 -122864278 + MIR SINE MIR 22 256 -6 1789 174 44 0 chr11 25919286 25919649 -122863823 - L1MA4A LINE L1 -14 6289 5911 1306 164 19 120 chr11 25919649 25919810 -122863662 + L1MA5 LINE L1 5623 5736 -564 1212 208 4 0 chr11 25919810 25920051 -122863421 + L1PA16 LINE L1 5906 6147 -19 1306 164 19 120 chr11 25920051 25920213 -122863259 + L1MA5 LINE L1 5736 5913 -387 980 211 4 32 chr11 25920567 25920809 -122862663 + Tigger7 DNA MER2_type 1 299 -434 * 1949 171 46 0 chr11 25920805 25921156 -122862316 + Tigger7 DNA MER2_type 2221 2587 0 301 377 105 40 chr11 25921573 25921849 -122861623 + L2 LINE L2 2979 3272 0 540 344 39 16 chr11 25922032 25922288 -122861184 + MIR SINE MIR 1 262 0 224 331 50 50 chr11 25922331 25922470 -122861002 - MIR SINE MIR -99 163 25 564 258 7 13 chr11 25924315 25924470 -122859002 + MER97c DNA MER1_type? 25 178 -912 428 377 13 18 chr11 25924647 25924875 -122858597 - MIR SINE MIR -32 230 4 195 310 22 88 chr11 25924915 25925141 -122858331 + L2 LINE L2 1447 1657 -1657 428 268 1 4 chr11 25925929 25926058 -122857414 + L1MC/D LINE L1 5705 5829 -346 696 299 54 45 chr11 25926108 25926443 -122857029 + MLT1I LTR MaLR 70 407 -2 747 324 55 26 chr11 25926504 25926887 -122856585 - HERV16 LTR ERVL -4106 890 497 439 272 27 14 chr11 25927156 25927303 -122856169 + L1MB8 LINE L1 6021 6169 -9 2327 150 16 5 chr11 25927476 25927903 -122855569 - L1MA6 LINE L1 0 6300 5869 255 164 91 0 chr11 25929396 25929451 -122854021 - L1PA16 LINE L1 0 6166 6107 4352 267 34 25 chr11 25929459 25930031 -122853441 - L1PA13 LINE L1 -3852 2945 2379 4832 37 3 7 chr11 25930031 25930626 -122852846 - L1PA4 LINE L1 -2 6153 5561 4352 267 34 25 chr11 25930626 25932427 -122851045 - L1PA13 LINE L1 -4418 2379 44 393 315 96 23 chr11 25932856 25933075 -122850397 - MIR SINE MIR -25 237 3 25 31 0 0 chr11 25933482 25933514 -122849958 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr11 25933833 25933857 -122849615 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 242 208 0 52 chr11 25934424 25934520 -122848952 - L1MC4 LINE L1 -1339 6703 6613 1116 145 0 0 chr11 25934544 25934710 -122848762 + AluSq SINE Alu 131 296 -17 22 0 0 0 chr11 25935271 25935293 -122848179 + AT_rich Low_complexity Low_complexity 1 22 0 1302 209 46 20 chr11 25935687 25935989 -122847483 + AluJo SINE Alu 1 310 -2 265 406 42 9 chr11 25936394 25936606 -122846866 + MIR SINE MIR 6 224 -38 1110 253 34 57 chr11 25936798 25937150 -122846322 - MLT1H LTR MaLR -200 349 6 287 235 209 9 chr11 25937596 25937711 -122845761 + L2 LINE L2 3134 3271 -1 231 36 0 0 chr11 25937758 25937786 -122845686 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 185 0 40 0 chr11 25938814 25938839 -122844633 + (TAAAAA)n Simple_repeat Simple_repeat 6 31 0 262 296 64 32 chr11 25940456 25940581 -122842891 + L2 LINE L2 3185 3313 0 21 57 0 0 chr11 25941391 25941426 -122842046 + AT_rich Low_complexity Low_complexity 1 35 0 1374 225 32 11 chr11 25942337 25942706 -122840766 - L1MC3 LINE L1 -16 7769 7393 213 279 0 16 chr11 25943179 25943240 -122840232 - L2 LINE L2 -2632 682 623 1631 180 18 0 chr11 25944224 25944502 -122838970 + AluJo SINE Alu 11 293 -19 183 42 0 0 chr11 25944636 25944660 -122838812 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 330 357 48 40 chr11 25944675 25944902 -122838570 - MLT1L LTR MaLR -185 430 202 430 306 11 61 chr11 25946051 25946150 -122837322 + MER45B DNA AcHobo 2 90 -1491 2030 103 21 3 chr11 25946150 25946440 -122837032 - AluSg SINE Alu -15 295 1 430 306 11 61 chr11 25946440 25946520 -122836952 + MER45B DNA AcHobo 90 172 -1409 2109 217 67 21 chr11 25946529 25947096 -122836376 + MER45B DNA AcHobo 448 1040 0 400 354 49 13 chr11 25947121 25947531 -122835941 + ERVL LTR ERVL 4866 5287 -367 435 284 75 98 chr11 25947752 25948181 -122835291 + LTR16B LTR ERVL 44 462 -2 5119 33 0 0 chr11 25948200 25948802 -122834670 + L1PA3 LINE L1 5551 6152 -3 26 0 0 0 chr11 25948802 25948828 -122834644 + AT_rich Low_complexity Low_complexity 1 26 0 366 311 79 17 chr11 25948856 25949033 -122834439 - MIR SINE MIR -28 234 47 2151 120 0 22 chr11 25949118 25949435 -122834037 + AluSx SINE Alu 2 311 -1 301 123 0 62 chr11 25950874 25950939 -122832533 + L1PA6 LINE L1 6094 6154 0 180 350 17 60 chr11 25950972 25951089 -122832383 - MIR SINE MIR -86 176 65 277 623 0 6 chr11 25951385 25951560 -122831912 + polypyrimidine Low_complexity Low_complexity 2 175 0 267 31 0 0 chr11 25951560 25951592 -122831880 + (CA)n Simple_repeat Simple_repeat 1 32 0 32 0 0 0 chr11 25952622 25952654 -122830818 + AT_rich Low_complexity Low_complexity 1 32 0 232 183 0 17 chr11 25952656 25952716 -122830756 + LTR66 LTR ERVL 399 457 -153 * 286 333 20 0 chr11 25952685 25952787 -122830685 - MER117 DNA MER1_type -12 185 82 28 48 0 0 chr11 25953552 25953594 -122829878 + AT_rich Low_complexity Low_complexity 1 42 0 236 135 0 58 chr11 25953765 25953817 -122829655 - L1MA4A LINE L1 -30 6273 6225 309 315 110 30 chr11 25954574 25954774 -122828698 - L3 LINE CR1 -10 1567 1352 233 309 0 21 chr11 25954844 25954941 -122828531 + CT-rich Low_complexity Low_complexity 1 95 0 23 33 0 0 chr11 25956715 25956745 -122826727 + AT_rich Low_complexity Low_complexity 1 30 0 238 349 76 36 chr11 25957424 25957728 -122825744 + L2 LINE L2 2528 2843 -471 200 298 35 18 chr11 25958512 25958569 -122824903 - MER5B DNA MER1_type 0 178 121 27 49 0 0 chr11 25958732 25958773 -122824699 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr11 25959914 25959939 -122823533 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 25960148 25960169 -122823303 + AT_rich Low_complexity Low_complexity 1 21 0 570 288 13 9 chr11 25960181 25960514 -122822958 - L1ME2 LINE L1 -26 6138 5761 23 33 0 0 chr11 25960527 25960557 -122822915 + AT_rich Low_complexity Low_complexity 1 30 0 419 219 66 17 chr11 25960824 25960977 -122822495 + L1MA7 LINE L1 6126 6289 -2 261 130 0 0 chr11 25961336 25961382 -122822090 + L1MB2 LINE L1 6119 6164 -7 763 58 0 0 chr11 25961415 25961518 -122821954 - L1PA8 LINE L1 0 6172 6070 205 328 30 45 chr11 25961825 25961959 -122821513 + MIR SINE MIR 57 188 -74 25 0 0 0 chr11 25962230 25962255 -122821217 + AT_rich Low_complexity Low_complexity 1 25 0 344 313 0 0 chr11 25962501 25962597 -122820875 - L1MC4 LINE L1 -1333 6709 6614 281 163 0 0 chr11 25962599 25962648 -122820824 - AluJ/FLAM SINE Alu -211 91 43 38 0 0 0 chr11 25962852 25962890 -122820582 + AT_rich Low_complexity Low_complexity 1 38 0 535 249 13 94 chr11 25963009 25963242 -122820230 - L2 LINE L2 -5 3308 3095 2024 78 7 4 chr11 25963246 25963517 -122819955 + AluY SINE Alu 1 272 -39 2417 83 3 3 chr11 25963628 25963967 -122819505 + L1PA7 LINE L1 5816 6154 0 269 284 129 39 chr11 25964026 25964181 -122819291 + MIR SINE MIR 78 246 -16 2085 128 73 14 chr11 25965526 25965870 -122817602 + THE1B LTR MaLR 1 364 0 58 70 0 0 chr11 25965893 25966007 -122817465 + AT_rich Low_complexity Low_complexity 1 114 0 2299 96 7 0 chr11 25966451 25966754 -122816718 - AluSp SINE Alu -8 305 1 223 140 40 0 chr11 25967421 25967471 -122816001 + (TA)n Simple_repeat Simple_repeat 1 52 0 398 269 0 0 chr11 25967483 25967591 -122815881 - L1ME LINE L1 -356 5810 5703 2054 128 20 0 chr11 25967593 25967890 -122815582 + AluSq SINE Alu 1 303 -10 767 200 0 11 chr11 25967903 25968083 -122815389 + GA-rich Low_complexity Low_complexity 1 178 0 1577 255 73 26 chr11 25968085 25968960 -122814512 - L1ME LINE L1 -663 5579 4795 818 250 15 0 chr11 25969987 25970183 -122813289 - L1ME1 LINE L1 -140 6026 5828 225 94 0 0 chr11 25970355 25970387 -122813085 + (TA)n Simple_repeat Simple_repeat 1 32 0 235 95 0 0 chr11 25970390 25970432 -122813040 - LTR66 LTR ERVL -171 439 398 * 240 91 0 0 chr11 25970397 25970441 -122813031 + LTR66 LTR ERVL 395 438 -172 1047 252 28 8 chr11 25970476 25970726 -122812746 - MLT2D LTR ERVL -57 357 103 495 218 32 0 chr11 25971386 25971510 -122811962 + MLT2C1 LTR ERVL 1 128 -269 244 200 15 0 chr11 25971526 25971591 -122811881 - L1MA8 LINE L1 -5 6286 6221 238 205 74 131 chr11 25971591 25971713 -122811759 + MLT2C1 LTR ERVL 124 238 -159 1514 190 119 9 chr11 25971728 25972149 -122811323 - L1 LINE L1 -1667 4479 4013 3283 151 57 17 chr11 25972149 25972222 -122811250 + L1MA5A LINE L1 5615 5684 -613 1926 160 22 71 chr11 25972222 25972672 -122810800 - MSTB1 LTR MaLR -2 430 3 3283 151 57 17 chr11 25972672 25973249 -122810223 + L1MA5A LINE L1 5684 6291 -6 282 269 13 26 chr11 25973265 25973343 -122810129 + MLT2C1 LTR ERVL 234 310 -87 24 32 0 0 chr11 25973763 25973794 -122809678 + AT_rich Low_complexity Low_complexity 1 31 0 267 206 27 14 chr11 25973809 25973882 -122809590 + (TA)n Simple_repeat Simple_repeat 2 75 0 24388 45 42 2 chr11 25973968 25977087 -122806385 + L1P LINE L1 1 3244 -2902 361 342 123 18 chr11 25978375 25978603 -122804869 - MIR SINE MIR -10 252 1 1967 137 0 13 chr11 25978655 25978955 -122804517 + AluSx SINE Alu 1 296 -16 1591 227 54 33 chr11 25979108 25979500 -122803972 - MER101B LTR ERV1 -170 400 1 1393 280 25 2 chr11 25979516 25979959 -122803513 - L1M4 LINE L1 -996 5150 4698 222 37 0 0 chr11 25980274 25980301 -122803171 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1847 164 0 0 chr11 25980301 25980581 -122802891 - AluSx SINE Alu -32 280 1 831 134 0 6 chr11 25980637 25980794 -122802678 + AluSx SINE Alu 44 286 -26 201 74 0 0 chr11 25980799 25980826 -122802646 + (TAA)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr11 25980922 25980962 -122802510 + AT_rich Low_complexity Low_complexity 1 40 0 261 261 76 42 chr11 25981923 25982042 -122801430 + L1ME3A LINE L1 6046 6168 -2 22 0 0 0 chr11 25982161 25982183 -122801289 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 25982350 25982384 -122801088 + AT_rich Low_complexity Low_complexity 1 34 0 206 244 0 0 chr11 25982973 25983018 -122800454 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 304 346 77 58 chr11 25983624 25984089 -122799383 - L2 LINE L2 -15 3298 2825 2315 146 6 3 chr11 25986903 25987266 -122796206 + THE1B LTR MaLR 1 364 0 381 335 24 30 chr11 25987503 25987667 -122795805 + MER5B DNA MER1_type 7 169 -9 23 68 0 0 chr11 25988197 25988241 -122795231 + AT_rich Low_complexity Low_complexity 1 44 0 229 301 0 0 chr11 25988679 25988752 -122794720 - L2 LINE L2 -247 3066 2994 352 317 129 17 chr11 25988756 25989160 -122794312 - L2 LINE L2 -1000 2314 1866 22 35 0 0 chr11 25989374 25989403 -122794069 + AT_rich Low_complexity Low_complexity 1 29 0 730 192 7 0 chr11 25989405 25989556 -122793916 - L1MB3 LINE L1 -17 6166 6015 228 333 14 0 chr11 25989655 25989727 -122793745 - MIR SINE MIR -133 129 57 198 0 0 0 chr11 25989844 25989866 -122793606 + (A)n Simple_repeat Simple_repeat 1 22 0 1734 162 0 3 chr11 25989875 25990188 -122793284 + AluSx SINE Alu 1 312 0 1798 176 60 8 chr11 25990457 25990821 -122792651 - MLT1B LTR MaLR 0 390 8 663 158 20 41 chr11 25991643 25991789 -122791683 + AluSg/x SINE Alu 168 310 0 648 304 15 34 chr11 25992933 25993137 -122790335 - MIR SINE MIR -38 224 25 2115 87 16 23 chr11 25994396 25994705 -122788767 - AluSq SINE Alu -6 307 1 6418 175 16 25 chr11 25995022 25995135 -122788337 + Tigger1 DNA MER2_type 1172 1284 -1134 2481 49 0 3 chr11 25995135 25995439 -122788033 - AluY SINE Alu -8 303 1 6418 175 16 25 chr11 25995439 25996509 -122786963 + Tigger1 DNA MER2_type 1284 2346 -72 1642 155 43 43 chr11 25996509 25996883 -122786589 + THE1C LTR MaLR 1 374 -1 6418 175 16 25 chr11 25996883 25996938 -122786534 + Tigger1 DNA MER2_type 2346 2400 -18 296 350 111 9 chr11 25998555 25998772 -122784700 - MIR SINE MIR -18 244 6 1120 246 48 51 chr11 26000314 26000667 -122782805 - MLT1A1 LTR MaLR -3 362 11 375 23 0 0 chr11 26000673 26000717 -122782755 + (GA)n Simple_repeat Simple_repeat 1 44 0 1335 133 18 22 chr11 26000725 26000950 -122782522 - AluSg/x SINE Alu -11 301 78 23 0 0 0 chr11 26000955 26000978 -122782494 + AT_rich Low_complexity Low_complexity 1 23 0 220 337 48 42 chr11 26001520 26001686 -122781786 + MIR SINE MIR 95 261 -1 388 193 37 12 chr11 26001743 26001904 -122781568 + (TA)n Simple_repeat Simple_repeat 1 165 0 1381 209 23 0 chr11 26001910 26002169 -122781303 + AluJb SINE Alu 4 268 -44 22 0 0 0 chr11 26002820 26002842 -122780630 + AT_rich Low_complexity Low_complexity 1 22 0 181 312 55 37 chr11 26003268 26003377 -122780095 + L2 LINE L2 3192 3302 -11 2972 55 3 0 chr11 26003742 26004126 -122779346 - L1PA4 LINE L1 -1 6154 5770 4794 41 9 0 chr11 26004303 26005298 -122778174 - L1PA4 LINE L1 -366 5789 4790 2193 84 7 16 chr11 26005299 26005608 -122777864 + AluY SINE Alu 1 306 -5 3651 167 35 7 chr11 26006156 26006893 -122776579 + L1MA4 LINE L1 5542 6299 -1 480 248 81 78 chr11 26006917 26007239 -122776233 + L1M4b LINE L1 1213 1535 -5324 986 247 78 84 chr11 26007335 26008283 -122775189 - L1M4 LINE L1 -2570 3576 2635 1867 245 20 83 chr11 26008295 26009216 -122774256 + L1M4b LINE L1 2787 3764 -3193 1458 188 38 41 chr11 26009216 26009508 -122773964 + AluJo SINE Alu 1 291 -21 1867 245 20 83 chr11 26009508 26009523 -122773949 + L1M4b LINE L1 3764 3778 -3179 344 77 19 0 chr11 26009523 26009575 -122773897 + (TA)n Simple_repeat Simple_repeat 2 54 0 1867 245 20 83 chr11 26009575 26009779 -122773693 + L1M4b LINE L1 3778 3846 -3111 1943 139 3 7 chr11 26009782 26010083 -122773389 + AluSg SINE Alu 1 300 -10 960 214 50 56 chr11 26010091 26010394 -122773078 + L1M4b LINE L1 4583 4883 -2074 1116 269 69 7 chr11 26010395 26010800 -122772672 - L1MD2 LINE L1 -271 6348 5919 1771 223 46 3 chr11 26010807 26011116 -122772356 - LTR2 LTR ERV1 0 449 118 387 0 0 0 chr11 26011116 26011159 -122772313 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1771 223 46 3 chr11 26011159 26011240 -122772232 - LTR2 LTR ERV1 -331 118 42 2179 167 8 5 chr11 26011317 26011838 -122771634 - HERVE LTR ERV1 -2 7811 7211 2420 254 68 37 chr11 26011844 26012809 -122770663 - L1MD2 LINE L1 -710 5909 4881 1297 252 0 13 chr11 26012809 26013122 -122770350 - AluJo SINE Alu -3 309 1 2420 254 68 37 chr11 26013122 26013666 -122769806 - L1MD2 LINE L1 -1738 4881 4355 389 308 0 8 chr11 26014465 26014598 -122768874 - L1MD2 LINE L1 -2051 4355 4224 219 143 26 65 chr11 26014609 26014686 -122768786 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 1301 281 67 5 chr11 26014767 26015216 -122768256 - L1MD2 LINE L1 -5240 1169 693 22 0 0 0 chr11 26017129 26017151 -122766321 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 26017284 26017311 -122766161 + AT_rich Low_complexity Low_complexity 1 27 0 753 161 24 8 chr11 26019432 26019556 -122763916 + MSTB LTR MaLR 301 426 0 351 306 68 52 chr11 26022094 26022346 -122761126 + MIR SINE MIR 4 259 -3 499 291 53 90 chr11 26023490 26023813 -122759659 + L2 LINE L2 2606 2916 -398 526 316 27 7 chr11 26124115 26124310 -122659162 + MIR SINE MIR 3 198 -64 659 203 56 7 chr11 26124313 26124456 -122659016 + MER33 DNA MER1_type 1 150 -174 2368 77 3 0 chr11 26124458 26124757 -122658715 + AluY SINE Alu 2 301 -10 328 296 107 6 chr11 26125277 26125436 -122658036 - MIR SINE MIR -64 198 24 3893 73 8 0 chr11 26125457 26125966 -122657506 + L1P LINE L1 5 517 -5629 884 184 7 7 chr11 26126066 26126218 -122657254 + AluJo SINE Alu 115 266 -46 295 266 53 21 chr11 26126261 26126355 -122657117 - MER101B LTR ERV1 -276 294 198 341 203 13 38 chr11 26126656 26126735 -122656737 + MER5B DNA MER1_type 100 176 -2 32 91 0 0 chr11 26126816 26126904 -122656568 + AT_rich Low_complexity Low_complexity 1 88 0 510 243 0 43 chr11 26126997 26127182 -122656290 - Charlie1 DNA MER1_type -15 2746 2570 2337 81 0 3 chr11 26127380 26127687 -122655785 - AluY SINE Alu -5 306 1 216 246 29 0 chr11 26127779 26127865 -122655607 + (TA)n Simple_repeat Simple_repeat 1 88 0 292 172 29 3 chr11 26128182 26128250 -122655222 - L1MB8 LINE L1 -199 5965 5894 750 164 64 0 chr11 26128640 26128780 -122654692 + THE1C LTR MaLR 27 175 -200 1484 266 59 37 chr11 26128886 26129569 -122653903 - L1MC4 LINE L1 -633 7409 6712 8372 46 0 4 chr11 26129710 26130782 -122652690 - L1P LINE L1 -2128 4018 2951 382 239 108 74 chr11 26130882 26131058 -122652414 + MIR3 SINE MIR 1 182 -26 2883 124 140 22 chr11 26132532 26133081 -122650391 - LTR18B LTR ERVL 0 614 1 3085 282 11 13 chr11 26133610 26134440 -122649032 - HERV17 LTR ERV1 -2746 3903 3076 201 98 24 24 chr11 26134447 26134488 -122648984 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2006 164 16 42 chr11 26134491 26134906 -122648566 - HERV17 LTR ERV1 -3568 3081 956 26 0 0 0 chr11 26135194 26135220 -122648252 + AT_rich Low_complexity Low_complexity 1 26 0 1407 170 17 94 chr11 26135925 26136330 -122647142 - L1MC3 LINE L1 -15 7770 7397 2416 45 0 0 chr11 26136445 26136734 -122646738 - L1P LINE L1 -5500 646 358 * 7061 34 0 0 chr11 26136727 26137589 -122645883 + L1P LINE L1 4442 5303 -843 198 330 28 38 chr11 26137769 26137875 -122645597 - L2 LINE L2 -788 2526 2422 197 162 0 0 chr11 26138017 26138054 -122645418 + L2 LINE L2 3277 3313 0 2608 39 3 0 chr11 26138298 26138606 -122644866 - AluY SINE Alu -2 309 1 221 258 45 0 chr11 26138787 26138853 -122644619 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2056 129 3 0 chr11 26139263 26139549 -122643923 - AluSx SINE Alu -20 292 6 1499 246 55 55 chr11 26140150 26140751 -122642721 + BaEV-int LTR ERV1 571 1171 -6614 * 2499 222 122 48 chr11 26140723 26141472 -122642000 + BaEV-int LTR ERV1 833 1636 -5013 1759 98 11 33 chr11 26141466 26141741 -122641731 + BaEV-int LTR ERV1 1871 2139 -4510 * 5666 40 3 0 chr11 26141841 26142532 -122640940 - L1P LINE L1 -1575 4571 3879 4684 81 0 2 chr11 26142522 26143166 -122640306 - L1P LINE L1 -3142 3004 2362 * 340 215 0 0 chr11 26143305 26143370 -122640102 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr11 26143370 26143730 -122639742 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr11 26143730 26144735 -122638737 - THE1A-int LTR MaLR 0 1580 558 1491 239 5 0 chr11 26144734 26145110 -122638362 + L1P LINE L1 4906 5283 -863 * 236 204 0 0 chr11 26145210 26145259 -122638213 + A-rich Low_complexity Low_complexity 1 49 0 1904 150 0 16 chr11 26145510 26145817 -122637655 + AluJo SINE Alu 1 302 -10 443 250 88 25 chr11 26145848 26146008 -122637464 + MIR SINE MIR 43 212 -50 203 297 94 43 chr11 26146346 26146484 -122636988 - MIR SINE MIR 0 262 118 912 133 38 0 chr11 26146773 26146931 -122636541 + L1MA5A LINE L1 6042 6205 -92 250 160 0 0 chr11 26146931 26146981 -122636491 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 590 304 62 18 chr11 26147737 26147964 -122635508 + MIR SINE MIR 1 237 -25 474 250 50 0 chr11 26148139 26148259 -122635213 - MER94 DNA DNA -1 133 8 8761 35 1 1 chr11 26148506 26149578 -122633894 - L1P LINE L1 -905 5241 4170 354 328 20 20 chr11 26150086 26150281 -122633191 - MER66-int LTR ERV1 -5043 1633 1439 237 143 0 20 chr11 26151025 26151074 -122632398 - LTR26 LTR ERV1 -555 48 1 876 190 23 56 chr11 26151325 26151541 -122631931 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr11 26151645 26151817 -122631655 + L2 LINE L2 2926 3091 -181 734 261 50 33 chr11 26152615 26152975 -122630497 - MER69 DNA AcHobo -3 2523 2158 369 244 13 0 chr11 26154546 26154624 -122628848 + Tigger5 DNA MER2_type 1 79 -2244 353 107 0 0 chr11 26154617 26154673 -122628799 + Tigger5 DNA MER2_type 2081 2136 -187 * 1400 77 6 0 chr11 26155752 26155922 -122627550 + AluSx SINE Alu 3 173 -139 5333 170 29 18 chr11 26156022 26157416 -122626056 + L1MA4 LINE L1 4889 6300 0 2020 127 0 26 chr11 26157418 26157726 -122625746 + AluSx SINE Alu 1 300 -12 1028 51 0 0 chr11 26157743 26157861 -122625611 + AluY SINE Alu 1 118 -193 23 33 0 0 chr11 26158240 26158270 -122625202 + AT_rich Low_complexity Low_complexity 1 30 0 376 19 38 0 chr11 26158857 26158910 -122624562 + (TA)n Simple_repeat Simple_repeat 2 56 0 1751 146 10 17 chr11 26158910 26159205 -122624267 - AluSx SINE Alu -19 293 1 355 274 46 57 chr11 26159381 26159556 -122623916 + MIR SINE MIR 12 184 -78 1597 208 30 46 chr11 26159556 26160024 -122623448 + MER89 LTR ERV1 1 559 0 225 296 59 15 chr11 26160928 26161063 -122622409 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr11 26161088 26161112 -122622360 + AT_rich Low_complexity Low_complexity 1 24 0 299 379 37 23 chr11 26161240 26161454 -122622018 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr11 26161637 26161659 -122621813 + AT_rich Low_complexity Low_complexity 1 22 0 918 159 11 42 chr11 26161889 26162078 -122621394 + LTR5 LTR ERVK 787 969 0 2514 127 5 16 chr11 26162078 26162457 -122621015 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr11 26162563 26162734 -122620738 + MIR SINE MIR 24 203 -59 224 167 21 0 chr11 26162734 26162782 -122620690 + (TG)n Simple_repeat Simple_repeat 1 49 0 342 273 11 0 chr11 26162782 26162870 -122620602 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr11 26162877 26162936 -122620536 + (TA)n Simple_repeat Simple_repeat 1 62 0 237 264 0 0 chr11 26163501 26163554 -122619918 - MIR SINE MIR -10 252 200 189 323 15 0 chr11 26163911 26163976 -122619496 + MIR SINE MIR 197 262 0 1268 210 20 13 chr11 26164811 26165111 -122618361 - L1M4 LINE L1 -2028 4118 3817 2840 60 0 3 chr11 26165376 26165740 -122617732 - L1PA6 LINE L1 0 6154 5792 420 236 7 40 chr11 26165762 26165910 -122617562 - L1M4 LINE L1 -903 6662 6520 226 288 0 0 chr11 26165969 26166049 -122617423 + (TA)n Simple_repeat Simple_repeat 2 81 0 4957 184 12 25 chr11 26166050 26167021 -122616451 + Ricksha_b DNA DNA 1 959 -295 979 121 29 6 chr11 26167123 26167296 -122616176 + L1PA13 LINE L1 5986 6162 -1 * 5114 151 20 9 chr11 26167293 26168548 -122614924 + L1PA15 LINE L1 4909 6165 0 192 326 239 0 chr11 26170009 26170147 -122613325 - MIR SINE MIR -12 250 80 1655 182 3 17 chr11 26170878 26171169 -122612303 - AluJb SINE Alu -25 287 1 2644 245 120 25 chr11 26171172 26172590 -122610882 - L1M4 LINE L1 -3106 4459 2910 2083 107 0 0 chr11 26172590 26172879 -122610593 - L1PA6 LINE L1 0 6154 5866 11213 114 26 46 chr11 26172979 26173276 -122610196 + L1P LINE L1 2957 3258 -2888 2737 56 0 0 chr11 26173276 26173613 -122609859 + L1PA3 LINE L1 5814 6155 0 11213 114 26 46 chr11 26173613 26175279 -122608193 + L1P LINE L1 3258 4881 -1265 266 300 115 0 chr11 26175759 26175889 -122607583 - MIR SINE MIR -1 261 117 325 333 59 5 chr11 26177121 26177307 -122606165 - MLT1L LTR MaLR 0 615 420 2562 188 45 12 chr11 26177626 26178142 -122605330 - L1P4 LINE L1 -437 5724 5226 369 0 0 0 chr11 26178142 26178183 -122605289 + (TG)n Simple_repeat Simple_repeat 1 41 0 2562 188 45 12 chr11 26178183 26179415 -122604057 - L1P4 LINE L1 -935 5226 3729 359 159 29 0 chr11 26179416 26179485 -122603987 + L1P4 LINE L1 3656 3726 -2420 267 262 8 139 chr11 26179806 26179928 -122603544 + MLT1K LTR MaLR 67 172 -416 231 36 0 0 chr11 26180048 26180076 -122603396 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 595 348 91 45 chr11 26180080 26180335 -122603137 - L2 LINE L2 -13 3300 3013 2586 52 0 0 chr11 26180335 26180640 -122602832 + AluY SINE Alu 1 305 -6 595 348 91 45 chr11 26180640 26180847 -122602625 - L2 LINE L2 -300 3013 2817 259 297 14 43 chr11 26181029 26181167 -122602305 - HAL1 LINE L1 -1451 1056 923 896 204 66 0 chr11 26181393 26181560 -122601912 + MER5A DNA MER1_type 12 189 0 1404 246 52 48 chr11 26181792 26182252 -122601220 + MLT1C LTR MaLR 6 467 0 26 0 0 0 chr11 26182714 26182740 -122600732 + AT_rich Low_complexity Low_complexity 1 26 0 264 169 15 62 chr11 26183050 26183115 -122600357 - L1ME LINE L1 -289 5832 5771 554 121 0 0 chr11 26183976 26184059 -122599413 - AluSp/q SINE Alu -11 302 220 12850 38 1 0 chr11 26184198 26185764 -122597708 - L1P LINE L1 -1261 4885 3318 4112 186 39 12 chr11 26185763 26186692 -122596780 + L1 LINE L1 3611 4564 -1582 * 273 218 99 59 chr11 26186801 26186902 -122596570 + MIR SINE MIR 51 155 -107 5378 60 1 0 chr11 26187356 26188038 -122595434 - L1PA3 LINE L1 -3 6152 5470 736 75 57 0 chr11 26188038 26188144 -122595328 + L1PA3 LINE L1 5372 5483 -671 * 2249 258 53 23 chr11 26188142 26189508 -122593964 - L1M2 LINE L1 -4327 1708 323 435 356 54 0 chr11 26189508 26189730 -122593742 - L1M3a LINE L1 -5172 783 550 520 208 48 0 chr11 26189773 26189898 -122593574 - L1MC/D LINE L1 -554 5790 5660 1043 220 16 4 chr11 26189912 26190162 -122593310 + L1MD1 LINE L1 5647 5899 -460 2410 176 26 105 chr11 26190167 26190702 -122592770 + LTR42 LTR ERVL 1 493 -2 397 489 40 21 chr11 26190707 26191032 -122592440 + L1MD1 LINE L1 5904 6234 -8 2022 86 22 71 chr11 26191042 26191366 -122592106 + AluSc SINE Alu 1 308 -1 15799 153 23 13 chr11 26192520 26193128 -122590344 + L1MA3 LINE L1 268 868 -6697 958 25 17 0 chr11 26193128 26193246 -122590226 + L1PA4 LINE L1 6033 6152 -3 15799 153 23 13 chr11 26193246 26195265 -122588207 + L1MA3 LINE L1 868 2922 -4643 3003 215 46 4 chr11 26195250 26196030 -122587442 + L1MA3 LINE L1 3795 4607 -2958 * 5425 167 23 22 chr11 26196131 26197208 -122586264 + L1MA3 LINE L1 5332 6409 -1156 2250 169 77 2 chr11 26197177 26197621 -122585851 + L1MA3 LINE L1 7248 7724 0 * 226 350 175 10 chr11 26197649 26197746 -122585726 - L2 LINE L2 -38 3234 3122 185 327 18 103 chr11 26197939 26198104 -122585368 - L2 LINE L2 -476 2838 2688 2887 53 3 5 chr11 26198600 26198975 -122584497 - L1PA5 LINE L1 0 6154 5781 23 0 0 0 chr11 26199180 26199203 -122584269 + AT_rich Low_complexity Low_complexity 1 23 0 40 87 0 0 chr11 26200334 26200437 -122583035 + AT_rich Low_complexity Low_complexity 1 103 0 270 106 0 0 chr11 26200446 26200493 -122582979 + (CATA)n Simple_repeat Simple_repeat 2 48 0 271 285 14 95 chr11 26200633 26200854 -122582618 - MLT1K LTR MaLR -13 575 373 778 211 43 27 chr11 26200969 26201154 -122582318 + MER5A DNA MER1_type 2 189 0 280 308 19 37 chr11 26201577 26201684 -122581788 - MIR SINE MIR -97 165 61 19170 35 0 1 chr11 26202578 26205692 -122577780 - L1PA3 LINE L1 -3 6152 3039 255 182 36 0 chr11 26206101 26206156 -122577316 + LTR67 LTR ERVL 457 513 -44 864 179 25 20 chr11 26206158 26206359 -122577113 - L1 LINE L1 -3104 2866 2665 1577 274 56 26 chr11 26206372 26207027 -122576445 - L1 LINE L1 -3490 2480 1757 366 23 0 0 chr11 26207027 26207070 -122576402 + (TG)n Simple_repeat Simple_repeat 2 44 0 1577 274 56 26 chr11 26207070 26207615 -122575857 - L1 LINE L1 -4213 1757 1230 1822 293 42 51 chr11 26207616 26208854 -122574618 - L1 LINE L1 -4895 996 2 534 290 103 5 chr11 26208959 26209328 -122574144 - L1M4 LINE L1 -2940 3206 2802 528 371 62 11 chr11 26209476 26209834 -122573638 + L2 LINE L2 1498 1873 -1441 369 0 0 0 chr11 26210715 26210756 -122572716 + (TG)n Simple_repeat Simple_repeat 2 42 0 527 343 30 35 chr11 26210757 26211153 -122572319 + L1MEc LINE L1 257 650 -5746 5622 113 5 9 chr11 26211178 26212035 -122571437 - L1PA13 LINE L1 -4 6159 5307 1213 283 45 18 chr11 26212036 26212757 -122570715 + L1MEc LINE L1 673 1281 -4832 585 287 48 48 chr11 26212767 26213035 -122570437 - MLT1H LTR MaLR -142 407 140 204 217 0 0 chr11 26213055 26213101 -122570371 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 248 173 0 0 chr11 26213101 26213153 -122570319 - L1MC4 LINE L1 -1339 6703 6652 2736 91 3 5 chr11 26213528 26213912 -122569560 - L1PA13 LINE L1 0 6163 5781 253 298 37 55 chr11 26214184 26214242 -122569230 + L1MEc LINE L1 1041 1099 -5106 327 25 0 0 chr11 26214242 26214282 -122569190 + (TA)n Simple_repeat Simple_repeat 2 41 0 2181 108 7 0 chr11 26214282 26214578 -122568894 - AluSg SINE Alu -12 298 1 253 298 37 55 chr11 26214578 26214736 -122568736 + L1MEc LINE L1 1097 1254 -4951 372 263 22 104 chr11 26214747 26215064 -122568408 + L1MEc LINE L1 1519 1755 -861 367 309 122 16 chr11 26215295 26215541 -122567931 + L1MEc LINE L1 2023 2294 -4102 192 107 0 0 chr11 26215556 26215584 -122567888 - L2 LINE L2 -19 3294 3267 27 29 0 0 chr11 26216537 26216571 -122566901 + AT_rich Low_complexity Low_complexity 1 34 0 465 331 61 24 chr11 26216662 26216955 -122566517 + L2 LINE L2 3009 3312 -1 960 233 22 0 chr11 26217726 26217954 -122565518 + L1MEc LINE L1 3463 3695 -2520 367 312 8 8 chr11 26218105 26218230 -122565242 - L2 LINE L2 -1170 2144 2020 229 255 0 0 chr11 26218251 26218298 -122565174 + MLT1K LTR MaLR 345 391 -197 688 133 0 0 chr11 26218338 26218443 -122565029 + AluSx SINE Alu 1 105 -208 436 246 95 8 chr11 26218443 26218569 -122564903 - L2 LINE L2 -977 2337 2201 1130 189 0 5 chr11 26218571 26218772 -122564700 + AluSx SINE Alu 99 298 -14 6623 229 30 19 chr11 26220115 26221083 -122562389 + L1PB1 LINE L1 1426 2381 -3765 2057 140 3 0 chr11 26221083 26221390 -122562082 + AluSq SINE Alu 1 308 -5 6623 229 30 19 chr11 26221390 26222719 -122560753 + L1PB1 LINE L1 2376 3745 -2396 5586 120 8 5 chr11 26222719 26224121 -122559351 + L1PB1 LINE L1 4740 6147 -4 421 388 70 21 chr11 26224482 26224995 -122558477 - HERVL LTR ERVL -1714 3940 3443 242 325 98 0 chr11 26227216 26227339 -122556133 + L2 LINE L2 2919 3053 -219 528 243 72 7 chr11 26228270 26228422 -122555050 + MER69 DNA AcHobo 227 388 -838 * 1410 219 88 52 chr11 26228421 26228978 -122554494 + MER69 DNA AcHobo 1947 2523 -3 189 368 88 26 chr11 26230674 26230788 -122552684 - MIR SINE MIR -60 148 28 378 382 7 0 chr11 26230872 26231016 -122552456 - MIR3 SINE MIR -6 202 58 13638 65 8 2 chr11 26231245 26233067 -122550405 - L1PA6 LINE L1 -1796 4350 2517 7946 51 11 30 chr11 26233067 26234042 -122549430 + L1PA6 LINE L1 4353 5295 -859 2464 71 0 0 chr11 26234042 26234338 -122549134 + AluY SINE Alu 1 296 -15 7946 51 11 30 chr11 26234338 26235181 -122548291 + L1PA6 LINE L1 5295 6152 -2 25 31 0 0 chr11 26235371 26235403 -122548069 + AT_rich Low_complexity Low_complexity 1 32 0 1994 191 26 42 chr11 26235568 26236024 -122547448 + MLT1C LTR MaLR 19 467 0 26 64 0 0 chr11 26236060 26236107 -122547365 + AT_rich Low_complexity Low_complexity 1 47 0 399 294 149 17 chr11 26236217 26236452 -122547020 + L1ME4a LINE L1 5575 5840 -281 5170 125 42 8 chr11 26236478 26237423 -122546049 - L1PA16 LINE L1 0 6166 5191 657 241 94 128 chr11 26237591 26238069 -122545403 - MLT1C LTR MaLR 0 467 6 265 244 101 0 chr11 26238182 26238301 -122545171 - LTR37A LTR ERV1 0 426 296 344 224 40 13 chr11 26238590 26238666 -122544806 + MER58A DNA MER1_type 1 78 -29 463 224 95 104 chr11 26238694 26238935 -122544537 - LTR37B LTR ERV1 -113 355 117 1554 192 16 16 chr11 26238987 26239294 -122544178 - AluJb SINE Alu -5 307 1 299 294 9 0 chr11 26239696 26239805 -122543667 + (TA)n Simple_repeat Simple_repeat 1 110 0 1901 143 14 7 chr11 26240551 26240837 -122542635 + AluSx SINE Alu 1 288 -24 186 118 0 0 chr11 26240840 26240874 -122542598 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 281 282 0 14 chr11 26240875 26240946 -122542526 - L2 LINE L2 0 3272 3203 1241 342 79 3 chr11 26241084 26241724 -122541748 + L2 LINE L2 2447 3129 -184 396 0 0 0 chr11 26241876 26241920 -122541552 + (TG)n Simple_repeat Simple_repeat 2 45 0 660 303 179 17 chr11 26242107 26242460 -122541012 + LTR33 LTR ERVL 1 410 -111 228 129 0 0 chr11 26242489 26242520 -122540952 + LTR33 LTR ERVL 484 514 -7 483 343 85 52 chr11 26242523 26243133 -122540339 - L2 LINE L2 -668 2646 2017 27 81 0 0 chr11 26243579 26243641 -122539831 + AT_rich Low_complexity Low_complexity 1 62 0 1957 132 21 0 chr11 26243641 26243928 -122539544 - AluSq SINE Alu -20 293 1 24 67 0 0 chr11 26245127 26245172 -122538300 + AT_rich Low_complexity Low_complexity 1 45 0 3381 216 72 51 chr11 26245622 26246770 -122536702 - L1MC4 LINE L1 -6 8036 6865 22 56 0 0 chr11 26247225 26247261 -122536211 + AT_rich Low_complexity Low_complexity 1 36 0 283 222 26 26 chr11 26247520 26247673 -122535799 + (TA)n Simple_repeat Simple_repeat 2 154 0 2112 125 14 0 chr11 26248149 26248445 -122535027 + AluSx SINE Alu 9 308 -4 229 82 41 41 chr11 26248455 26248504 -122534968 + A-rich Low_complexity Low_complexity 2 50 0 320 325 37 32 chr11 26248682 26248870 -122534602 + MLT1J LTR MaLR 323 511 0 796 273 95 37 chr11 26248871 26249351 -122534121 + L2 LINE L2 2756 3310 -3 362 288 94 81 chr11 26249779 26250311 -122533161 + L1M4 LINE L1 4137 4675 -1471 1944 129 11 4 chr11 26250362 26250665 -122532807 + AluSx SINE Alu 1 305 0 245 267 19 57 chr11 26251112 26251217 -122532255 - HAL1 LINE L1 -725 1782 1682 357 374 71 41 chr11 26251300 26251594 -122531878 - HAL1 LINE L1 -2153 354 52 25 51 0 0 chr11 26251619 26251658 -122531814 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr11 26252522 26252549 -122530923 + AT_rich Low_complexity Low_complexity 1 27 0 415 238 38 44 chr11 26252568 26252728 -122530744 + L1MDa LINE L1 28 186 -6354 850 186 91 74 chr11 26252751 26253090 -122530382 - L1MC3 LINE L1 -1629 6156 5812 1862 173 58 8 chr11 26253115 26253509 -122529963 - L1MA9 LINE L1 -1 6311 5898 2132 219 57 16 chr11 26253512 26254087 -122529385 - L1MA9 LINE L1 -334 5978 5380 2708 182 23 23 chr11 26254088 26254620 -122528852 + Tigger1 DNA MER2_type 2 533 -1885 8749 37 0 1 chr11 26254720 26256427 -122527045 - L1PA3 LINE L1 -155 6000 4296 6121 18 1 0 chr11 26256427 26257131 -122526341 + L1PA3 LINE L1 5449 6155 0 7730 133 27 92 chr11 26257148 26258758 -122524714 + Tigger1 DNA MER2_type 914 2418 0 2409 201 49 50 chr11 26258758 26259454 -122524018 - L1MA9 LINE L1 -765 5381 4687 429 232 146 5 chr11 26259557 26259719 -122523753 + L1MA9 LINE L1 3505 3697 -2449 288 0 0 0 chr11 26259719 26259751 -122523721 + (TAA)n Simple_repeat Simple_repeat 2 33 0 429 232 146 5 chr11 26259751 26259773 -122523699 + L1MA9 LINE L1 3697 3715 -2431 * 6111 153 26 54 chr11 26259772 26262099 -122521373 + L1MA9 LINE L1 4047 6311 -1 200 152 196 0 chr11 26263035 26263081 -122520391 + L2 LINE L2 3205 3259 -54 369 102 0 0 chr11 26263096 26263155 -122520317 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 286 319 35 9 chr11 26264024 26264140 -122519332 + L3 LINE CR1 1453 1571 -6 26 0 0 0 chr11 26264220 26264246 -122519226 + AT_rich Low_complexity Low_complexity 1 26 0 247 274 0 0 chr11 26264426 26264499 -122518973 + T-rich Low_complexity Low_complexity 1 73 0 637 230 168 0 chr11 26265114 26265275 -122518197 - MER5A DNA MER1_type 0 189 2 444 318 113 55 chr11 26266246 26266661 -122516811 - MLT1K LTR MaLR -17 571 133 522 265 168 56 chr11 26267229 26267798 -122515674 + L2 LINE L2 2672 3313 0 388 109 0 0 chr11 26268201 26268256 -122515216 - MLT2A2 LTR ERVL 0 453 399 324 258 22 11 chr11 26268280 26268369 -122515103 - L1MC4 LINE L1 -1339 6703 6614 2880 78 21 8 chr11 26268389 26268776 -122514696 - MLT2A1 LTR ERVL -52 392 1 409 245 71 10 chr11 26269574 26269672 -122513800 + L2 LINE L2 3204 3307 -6 281 220 0 0 chr11 26270094 26270144 -122513328 + LTR67 LTR ERVL 507 556 -1 1544 205 30 0 chr11 26270198 26270495 -122512977 - MLT1A1 LTR MaLR -2 363 58 236 254 28 0 chr11 26270521 26270592 -122512880 - MLT1A1 LTR MaLR -301 73 1 21 0 0 0 chr11 26271337 26271358 -122512114 + AT_rich Low_complexity Low_complexity 1 21 0 559 244 74 37 chr11 26271711 26271981 -122511491 - HAL1 LINE L1 -955 1552 1273 271 264 55 55 chr11 26272066 26272267 -122511205 - HAL1 LINE L1 -1384 1123 923 17785 173 35 25 chr11 26272271 26276399 -122507073 - L1MA1 LINE L1 0 7721 3639 2099 118 6 13 chr11 26276399 26276714 -122506758 - AluSp SINE Alu 0 313 1 17785 173 35 25 chr11 26276714 26279182 -122504290 - L1MA1 LINE L1 -4082 3639 1021 3711 156 39 74 chr11 26279182 26279995 -122503477 - LTR1 LTR ERV1 0 785 1 17785 173 35 25 chr11 26279995 26281023 -122502449 - L1MA1 LINE L1 -6700 1021 6 505 279 12 18 chr11 26281028 26281193 -122502279 - HAL1 LINE L1 -1610 897 734 263 326 104 14 chr11 26281202 26281346 -122502126 + MIR SINE MIR 74 230 -32 837 179 0 7 chr11 26281358 26281509 -122501963 - LTR32 LTR ERVL -5 466 317 232 167 71 0 chr11 26281509 26281551 -122501921 - LTR32 LTR ERVL -103 368 324 1915 179 24 18 chr11 26281640 26281970 -122501502 - LTR32 LTR ERVL -119 352 21 615 311 55 25 chr11 26282096 26282331 -122501141 + MIR SINE MIR 8 249 -13 189 200 67 0 chr11 26282300 26282345 -122501127 + L2 LINE L2 3264 3311 -2 * 865 250 57 5 chr11 26282534 26282746 -122500726 - MER58A DNA MER1_type -1 223 1 22 56 0 0 chr11 26283513 26283549 -122499923 + AT_rich Low_complexity Low_complexity 1 36 0 219 283 132 13 chr11 26284328 26284457 -122499015 - MIR SINE MIR -13 249 104 192 77 0 0 chr11 26285063 26285089 -122498383 + (CAA)n Simple_repeat Simple_repeat 1 26 0 233 392 21 0 chr11 26285476 26285573 -122497899 + MIR SINE MIR 53 151 -111 245 379 103 0 chr11 26285576 26285721 -122497751 - L2 LINE L2 0 3313 3154 2642 190 22 59 chr11 26285840 26286818 -122496654 - L1M3 LINE L1 -383 5800 4848 * 5761 167 48 9 chr11 26286814 26286876 -122496596 + L1M4c LINE L1 1196 1254 -5130 483 63 0 0 chr11 26286876 26286939 -122496533 + (TA)n Simple_repeat Simple_repeat 1 63 0 5761 167 48 9 chr11 26286939 26288005 -122495467 + L1M4c LINE L1 1254 2368 -4016 353 330 73 15 chr11 26288082 26288288 -122495184 + LTR16C LTR ERVL 243 460 -31 193 375 106 19 chr11 26288342 26288598 -122494874 - L2 LINE L2 -662 2652 2375 441 349 57 29 chr11 26288736 26289051 -122494421 + LTR16C LTR ERVL 168 491 0 2057 99 44 96 chr11 26289177 26289395 -122494077 - THE1B LTR MaLR 0 364 173 2156 113 0 22 chr11 26289395 26289714 -122493758 + AluSq SINE Alu 2 313 0 2057 99 44 96 chr11 26289714 26289879 -122493593 - THE1B LTR MaLR -191 173 1 247 385 27 16 chr11 26289905 26290092 -122493380 - L2 LINE L2 -1896 1418 1230 311 314 51 39 chr11 26291945 26292101 -122491371 + MIR SINE MIR 84 241 -21 23778 59 2 2 chr11 26292290 26295373 -122488099 - L1PA5 LINE L1 -1912 4234 1150 9258 42 4 1 chr11 26295354 26297215 -122486257 + L1PA5 LINE L1 4237 6099 -55 * 238 233 0 17 chr11 26297215 26297275 -122486197 + LTR37B LTR ERV1 5 63 -405 988 174 22 5 chr11 26300664 26300848 -122482624 - MER5A DNA MER1_type -2 187 1 328 289 145 24 chr11 26300998 26301247 -122482225 + L2 LINE L2 3035 3313 0 307 289 63 21 chr11 26301688 26301830 -122481642 - L1ME4a LINE L1 -6 6115 5968 684 67 0 0 chr11 26302774 26302801 -122480671 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 684 67 0 0 chr11 26302801 26302891 -122480581 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 438 270 161 44 chr11 26303018 26303266 -122480206 - L2 LINE L2 -27 3286 3010 480 366 39 10 chr11 26303345 26303550 -122479922 - L2 LINE L2 -553 2761 2551 737 377 85 26 chr11 26303770 26304396 -122479076 - L2 LINE L2 -2285 1029 367 601 146 0 0 chr11 26304417 26304527 -122478945 + L1PA13 LINE L1 4784 4893 -1253 * 4822 117 21 16 chr11 26304523 26304665 -122478807 + L1PA13 LINE L1 5390 5530 -633 2716 85 3 0 chr11 26304665 26305019 -122478453 + THE1A LTR MaLR 1 355 0 4822 117 21 16 chr11 26305019 26305646 -122477826 + L1PA13 LINE L1 5530 6163 0 180 368 42 21 chr11 26305712 26305807 -122477665 - L2 LINE L2 -2977 337 241 780 298 36 30 chr11 26306049 26306385 -122477087 + MER93a LTR ERV1 63 400 -2 182 36 0 36 chr11 26307659 26307687 -122475785 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 315 0 0 0 chr11 26308031 26308066 -122475406 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 292 79 22 chr11 26309853 26309942 -122473530 - MIR SINE MIR -26 236 143 407 272 29 10 chr11 26309945 26310047 -122473425 + MLT1E LTR MaLR 2 101 -492 2229 116 0 3 chr11 26310048 26310358 -122473114 - AluSx SINE Alu -3 309 1 2416 107 20 46 chr11 26310379 26310772 -122472700 + MER4B LTR ERV1 1 383 -227 699 252 15 2 chr11 26311359 26311534 -122471938 - MER5A DNA MER1_type 0 189 1 2616 143 36 2 chr11 26311693 26312141 -122471331 + L1PB3 LINE L1 5682 6144 -10 442 297 177 11 chr11 26312190 26312358 -122471114 - MIR SINE MIR -58 204 5 919 196 141 66 chr11 26312358 26312720 -122470752 + MLT1B LTR MaLR 1 389 -1 1350 244 146 25 chr11 26313505 26314066 -122469406 - L1ME3 LINE L1 -212 5950 5322 218 269 0 115 chr11 26314181 26314259 -122469213 - MER5A DNA MER1_type -6 183 115 * 232 323 188 0 chr11 26314223 26314319 -122469153 + MER5A DNA MER1_type 50 163 -26 341 253 24 12 chr11 26314580 26314663 -122468809 - L2 LINE L2 -38 3275 3192 296 296 34 45 chr11 26315085 26315352 -122468120 - L1M4 LINE L1 -3705 2441 2178 201 159 45 23 chr11 26315399 26315443 -122468029 + CT-rich Low_complexity Low_complexity 1 45 0 1310 260 97 20 chr11 26315518 26316044 -122467428 + MLT1F1 LTR MaLR 1 564 -3 21 0 0 0 chr11 26316331 26316352 -122467120 + AT_rich Low_complexity Low_complexity 1 21 0 3781 65 29 13 chr11 26316565 26317087 -122466385 - L1PA7 LINE L1 0 6154 5625 3902 134 50 54 chr11 26317114 26317892 -122465580 - LTR1 LTR ERV1 0 785 11 23 0 0 0 chr11 26318166 26318189 -122465283 + AT_rich Low_complexity Low_complexity 1 23 0 6959 72 13 3 chr11 26318533 26319699 -122463773 + L1PA8 LINE L1 4981 6152 -20 1411 193 111 0 chr11 26320056 26320362 -122463110 - MER58B DNA MER1_type -1 340 1 268 200 82 45 chr11 26320792 26320902 -122462570 + L1ME4a LINE L1 5990 6103 -18 23 0 0 0 chr11 26320916 26320939 -122462533 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 26321915 26321936 -122461536 + AT_rich Low_complexity Low_complexity 1 21 0 886 257 90 50 chr11 26322538 26323036 -122460436 + HAL1 LINE L1 647 1164 -1343 23 0 0 0 chr11 26323633 26323656 -122459816 + AT_rich Low_complexity Low_complexity 1 23 0 884 329 50 30 chr11 26323952 26324356 -122459116 + MLT1G1 LTR MaLR 3 414 -181 297 191 157 0 chr11 26324605 26324694 -122458778 + LTR47A LTR ERVL 261 363 -89 295 195 110 59 chr11 26324717 26324835 -122458637 + MLT1G1 LTR MaLR 366 489 -41 6356 125 35 1 chr11 26324835 26326510 -122456962 + L1PA13 LINE L1 4412 6145 -18 281 337 58 37 chr11 26326783 26326973 -122456499 - MIR SINE MIR -46 216 23 3802 33 0 4 chr11 26327177 26327653 -122455819 + L1PA3 LINE L1 5686 6159 0 272 253 13 0 chr11 26327678 26327753 -122455719 + L1ME LINE L1 5624 5699 -422 803 124 93 12 chr11 26327900 26328061 -122455411 + L1MB2 LINE L1 5996 6169 -2 2337 253 70 6 chr11 26328335 26329182 -122454290 - L1MCb LINE L1 -2758 3806 2906 757 203 0 0 chr11 26329189 26329322 -122454150 - FLAM_A SINE Alu -2 140 8 2201 237 114 48 chr11 26329332 26329605 -122453867 - L1MCb LINE L1 -3662 2902 2649 180 111 0 0 chr11 26329605 26329632 -122453840 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2201 237 114 48 chr11 26329632 26330052 -122453420 - L1MCb LINE L1 -3915 2649 2258 231 88 0 0 chr11 26330052 26330086 -122453386 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2201 237 114 48 chr11 26330086 26330712 -122452760 - L1MCb LINE L1 -4306 2258 1496 * 2712 220 61 19 chr11 26330708 26331899 -122451573 - L1MCb LINE L1 -4849 1196 435 4197 201 77 61 chr11 26532429 26534017 -122249455 - MER52A LTR ERV1 0 1755 2 316 347 8 8 chr11 26534087 26534208 -122249264 + L1MEd LINE L1 543 663 -5456 1664 284 23 6 chr11 26534281 26534806 -122248666 + L1ME LINE L1 36 569 -5827 543 220 49 2 chr11 26534804 26534974 -122248498 + L1ME2 LINE L1 5784 5962 -200 * 587 205 8 0 chr11 26535066 26535188 -122248284 + L1MA10 LINE L1 6205 6327 -7 443 254 138 5 chr11 26535268 26535485 -122247987 + L1ME LINE L1 4015 4260 -1955 25 65 0 0 chr11 26535690 26535736 -122247736 + AT_rich Low_complexity Low_complexity 1 46 0 980 291 79 22 chr11 26535759 26536836 -122246636 + L1ME LINE L1 4580 5718 -521 260 187 133 120 chr11 26536949 26537099 -122246373 - MER112 DNA MER1_type -106 154 3 380 262 60 18 chr11 26537101 26537269 -122246203 + L1ME LINE L1 5718 5892 -347 508 263 29 0 chr11 26537270 26537441 -122246031 + L1ME3A LINE L1 5776 5951 -219 2404 57 0 16 chr11 26537607 26537922 -122245550 - AluY SINE Alu -1 310 1 659 215 89 141 chr11 26538663 26538721 -122244751 + MLT1J LTR MaLR 11 70 -441 1694 176 29 4 chr11 26538721 26539020 -122244452 - AluJb SINE Alu 0 306 1 659 215 89 141 chr11 26539020 26539444 -122244028 + MLT1J LTR MaLR 70 469 -42 273 331 25 32 chr11 26539895 26540052 -122243420 + L2 LINE L2 2903 3058 -214 381 292 9 0 chr11 26540236 26540349 -122243123 + MIR SINE MIR 129 242 -20 228 135 0 0 chr11 26541095 26541132 -122242340 + (TG)n Simple_repeat Simple_repeat 2 38 0 485 202 243 29 chr11 26541748 26541921 -122241551 + MIR SINE MIR 53 262 0 478 315 101 5 chr11 26541891 26542110 -122241362 - MIR SINE MIR -21 241 2 * 434 204 21 11 chr11 26542134 26542227 -122241245 + MIR SINE MIR 83 176 -86 21 57 0 0 chr11 26544341 26544376 -122239096 + AT_rich Low_complexity Low_complexity 1 35 0 371 312 16 26 chr11 26544561 26544750 -122238722 - MER5A DNA MER1_type 0 189 3 28 48 0 0 chr11 26545533 26545575 -122237897 + AT_rich Low_complexity Low_complexity 1 42 0 1905 93 4 30 chr11 26545726 26545994 -122237478 + AluSx SINE Alu 34 294 -18 2581 159 8 8 chr11 26546143 26546614 -122236858 + L1MB5 LINE L1 5702 6172 -2 799 286 63 0 chr11 26546640 26546892 -122236580 - Charlie8 DNA MER1_type -2146 271 4 924 182 41 82 chr11 26547499 26547818 -122235654 - L1MD3 LINE L1 -14 7981 7676 585 217 36 39 chr11 26547793 26548055 -122235417 - L1MC4a LINE L1 -1449 6359 6083 * 1668 170 39 26 chr11 26548170 26548476 -122234996 + AluJo SINE Alu 1 310 -2 191 372 104 11 chr11 26549709 26549892 -122233580 + L2 LINE L2 1983 2182 -1132 193 305 0 17 chr11 26550024 26550083 -122233389 + L3 LINE CR1 1518 1575 -2 213 340 68 68 chr11 26550403 26550609 -122232863 - L2 LINE L2 -339 2975 2770 302 327 68 12 chr11 26550882 26551044 -122232428 - L2 LINE L2 -580 2734 2564 298 195 356 8 chr11 26551069 26551187 -122232285 - MER5B DNA MER1_type 0 178 20 649 166 55 43 chr11 26552186 26552349 -122231123 - MER97b DNA MER1_type? -888 165 1 1554 255 42 5 chr11 26552551 26552998 -122230474 + LTR16B LTR ERVL 1 464 0 35049 83 8 10 chr11 26553032 26554370 -122229102 + L1PA6 LINE L1 174 1513 -4641 2369 60 40 0 chr11 26554370 26554669 -122228803 + AluY SINE Alu 1 311 0 35049 83 8 10 chr11 26554669 26559329 -122224143 + L1PA6 LINE L1 1513 6154 0 615 278 64 0 chr11 26559559 26559732 -122223740 - MIR SINE MIR -13 249 66 2294 97 0 0 chr11 26559739 26560037 -122223435 - AluSq SINE Alu -15 298 1 5844 110 10 10 chr11 26561070 26562237 -122221235 - L1PA16 LINE L1 0 6166 5005 388 346 94 10 chr11 26562703 26562905 -122220567 + L2 LINE L2 3012 3230 -42 359 299 0 68 chr11 26563353 26563560 -122219912 + HAL1 LINE L1 5 197 -2310 348 293 105 8 chr11 26563579 26563712 -122219760 - HAL1 LINE L1 -1497 1010 865 1106 237 105 82 chr11 26563906 26564593 -122218879 + HAL1 LINE L1 606 1308 -1199 283 159 29 14 chr11 26564638 26564707 -122218765 + HAL1 LINE L1 2431 2500 -7 1908 150 3 42 chr11 26564834 26565141 -122218331 - AluJo SINE Alu -17 295 1 2204 265 114 124 chr11 26565372 26565657 -122217815 + L2 LINE L2 444 730 -2584 788 220 18 0 chr11 26565657 26565825 -122217647 - FAM SINE Alu -4 171 1 2204 265 114 124 chr11 26565825 26566708 -122216764 + L2 LINE L2 730 1620 -1694 2224 77 19 39 chr11 26566708 26567018 -122216454 - AluSq SINE Alu -9 304 1 2204 265 114 124 chr11 26567018 26568209 -122215263 + L2 LINE L2 1620 2780 -534 632 26 13 0 chr11 26568863 26568965 -122214507 - AluSg/x SINE Alu 0 308 206 21 0 0 0 chr11 26568979 26569000 -122214472 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 26569044 26569066 -122214406 + AT_rich Low_complexity Low_complexity 1 22 0 694 196 0 8 chr11 26569209 26569342 -122214130 - FLAM_C SINE Alu -1 132 1 2347 94 3 3 chr11 26569378 26569687 -122213785 + AluSc SINE Alu 1 309 0 1204 165 0 46 chr11 26569768 26569986 -122213486 + AluJo SINE Alu 87 294 -18 26 0 0 0 chr11 26569992 26570018 -122213454 + AT_rich Low_complexity Low_complexity 1 26 0 265 259 6 62 chr11 26573123 26573285 -122210187 + T-rich Low_complexity Low_complexity 4 156 0 393 309 29 43 chr11 26573461 26573569 -122209903 + L2 LINE L2 3134 3241 -31 2021 109 103 32 chr11 26573569 26573909 -122209563 + THE1B LTR MaLR 1 364 0 393 309 29 43 chr11 26573909 26573939 -122209533 + L2 LINE L2 3241 3270 -2 352 265 8 34 chr11 26574002 26574119 -122209353 - L1MC4 LINE L1 -1316 6726 6613 * 357 267 0 0 chr11 26574036 26574126 -122209346 + L1MC4 LINE L1 6614 6703 -1339 866 248 5 33 chr11 26574288 26574502 -122208970 + MER58A DNA MER1_type 2 209 -15 2321 91 0 3 chr11 26574854 26575150 -122208322 + AluSx SINE Alu 5 299 -13 252 391 9 0 chr11 26575295 26575405 -122208067 - L3 LINE CR1 -7 1570 1460 736 258 50 0 chr11 26575418 26575600 -122207872 - MIR SINE MIR -1 261 71 336 274 29 115 chr11 26575600 26576009 -122207463 + L1ME1 LINE L1 3313 3686 -2460 206 258 24 48 chr11 26576051 26576175 -122207297 + (CATATA)n Simple_repeat Simple_repeat 6 126 0 27 0 0 0 chr11 26576269 26576296 -122207176 + AT_rich Low_complexity Low_complexity 1 27 0 1961 220 61 54 chr11 26576325 26577019 -122206453 + L1ME1 LINE L1 4394 5095 -1051 6488 23 0 0 chr11 26577019 26577767 -122205705 - L1PA4 LINE L1 -3 6152 5405 1961 220 61 54 chr11 26577767 26577863 -122205609 + L1ME1 LINE L1 5095 5189 -957 1562 124 5 0 chr11 26577918 26578135 -122205337 + AluSg/x SINE Alu 74 291 -21 418 131 36 0 chr11 26578155 26578239 -122205233 + GA-rich Low_complexity Low_complexity 4 90 0 385 223 86 0 chr11 26578239 26578378 -122205094 + L1ME1 LINE L1 5188 5338 -808 2759 182 52 72 chr11 26578419 26578447 -122205025 + L1ME1 LINE L1 5349 5376 -958 1760 140 79 50 chr11 26578447 26578826 -122204646 + MLT1B LTR MaLR 1 390 0 2759 182 52 72 chr11 26578826 26579645 -122203827 + L1ME1 LINE L1 5376 6334 0 283 189 0 0 chr11 26579938 26579991 -122203481 + L2 LINE L2 3261 3313 0 28 29 0 0 chr11 26580086 26580121 -122203351 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr11 26580531 26580556 -122202916 + (A)n Simple_repeat Simple_repeat 1 25 0 382 248 85 23 chr11 26581445 26581574 -122201898 - L2 LINE L2 -5 3308 3172 2069 146 3 0 chr11 26583838 26584140 -122199332 + AluSx SINE Alu 9 311 -1 348 301 26 9 chr11 26584151 26584264 -122199208 - L1MC4 LINE L1 -1318 6724 6610 37 23 0 0 chr11 26585182 26585226 -122198246 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 26585337 26585367 -122198105 + AT_rich Low_complexity Low_complexity 1 30 0 226 289 89 44 chr11 26585586 26585676 -122197796 + MIR SINE MIR 34 127 -81 581 218 184 0 chr11 26586166 26586313 -122197159 - MIR SINE MIR -71 191 18 1441 148 72 48 chr11 26586314 26586604 -122196868 + AluJb SINE Alu 3 299 -13 449 276 16 24 chr11 26586655 26586778 -122196694 - MIR SINE MIR -124 138 17 228 254 0 0 chr11 26587037 26587096 -122196376 + (TA)n Simple_repeat Simple_repeat 1 59 0 415 264 86 7 chr11 26587298 26587438 -122196034 - MIR SINE MIR -55 207 57 2341 98 10 0 chr11 26587737 26588044 -122195428 - AluSp SINE Alu -3 310 1 29 60 0 0 chr11 26588115 26588165 -122195307 + AT_rich Low_complexity Low_complexity 1 50 0 444 116 0 0 chr11 26588592 26588678 -122194794 + (GGGTG)n Simple_repeat Simple_repeat 4 89 0 24 0 0 0 chr11 26589048 26589072 -122194400 + AT_rich Low_complexity Low_complexity 1 24 0 920 164 188 0 chr11 26589153 26589360 -122194112 + L1MD3 LINE L1 7741 7986 -9 539 161 107 0 chr11 26589375 26589487 -122193985 + L1MC1 LINE L1 5900 6023 -310 3210 62 14 0 chr11 26589509 26589930 -122193542 - MLT2A2 LTR ERVL -26 427 1 1137 164 63 34 chr11 26589930 26590168 -122193304 + L1MC1 LINE L1 6081 6325 -8 270 244 13 26 chr11 26590832 26590910 -122192562 - L2 LINE L2 -18 3254 3178 309 258 129 0 chr11 26590954 26591047 -122192425 - MIR SINE MIR -36 226 122 297 347 31 0 chr11 26591111 26591209 -122192263 + MIR SINE MIR 14 114 -148 586 306 22 22 chr11 26591322 26591551 -122191921 - MIR SINE MIR -31 231 3 180 0 0 0 chr11 26592076 26592096 -122191376 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 367 355 111 21 chr11 26593769 26594003 -122189469 + MIR SINE MIR 2 256 -6 1964 158 10 3 chr11 26594318 26594628 -122188844 + AluJb SINE Alu 1 312 0 240 57 94 19 chr11 26594637 26594690 -122188782 + GA-rich Low_complexity Low_complexity 3 59 0 210 190 0 35 chr11 26594876 26594934 -122188538 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 23 0 0 0 chr11 26595546 26595569 -122187903 + AT_rich Low_complexity Low_complexity 1 23 0 194 284 149 50 chr11 26595859 26596000 -122187472 + MIR SINE MIR 103 257 -5 * 550 217 39 23 chr11 26595977 26596106 -122187366 - MIR SINE MIR -50 212 82 1757 191 14 20 chr11 26596127 26596484 -122186988 + MLT1A1 LTR MaLR 5 359 -6 2219 129 21 21 chr11 26596577 26596950 -122186522 + THE1C LTR MaLR 1 373 -2 822 264 5 10 chr11 26597061 26597269 -122186203 - LTR33 LTR ERVL -271 250 44 1740 76 5 5 chr11 26597523 26597746 -122185726 + AluSp SINE Alu 1 223 -90 366 270 30 10 chr11 26597746 26597846 -122185626 - LTR33 LTR ERVL -366 155 54 461 65 65 0 chr11 26597890 26597967 -122185505 + AluSp SINE Alu 228 309 -4 203 194 0 0 chr11 26598322 26598358 -122185114 + (TTA)n Simple_repeat Simple_repeat 2 37 0 539 145 51 0 chr11 26599017 26599134 -122184338 - L1MA9 LINE L1 -40 6272 6150 2066 128 50 39 chr11 26599247 26599607 -122183865 + THE1B LTR MaLR 1 364 0 1810 169 156 5 chr11 26599712 26600084 -122183388 - MSTA LTR MaLR 0 428 1 779 303 36 0 chr11 26600583 26600804 -122182668 + L2 LINE L2 2615 2843 -471 * 811 265 23 18 chr11 26600783 26601002 -122182470 + L2 LINE L2 3092 3311 -2 261 304 51 0 chr11 26601699 26601778 -122181694 + MIR SINE MIR 48 130 -78 * 448 217 66 9 chr11 26601768 26601874 -122181598 + L2 LINE L2 3199 3310 -3 295 326 56 0 chr11 26602257 26602346 -122181126 + MIR3 SINE MIR 86 179 -29 382 242 105 0 chr11 26602488 26602612 -122180860 - MLT1H1 LTR MaLR -24 531 395 233 202 0 119 chr11 26602687 26602771 -122180701 - MLT1H1 LTR MaLR -306 224 151 230 253 10 71 chr11 26602822 26602921 -122180551 - MLT1H1 LTR MaLR -471 122 30 2233 131 95 8 chr11 26602988 26603378 -122180094 - MSTA LTR MaLR 0 428 5 1922 136 44 14 chr11 26603914 26604435 -122179037 + L1PA15 LINE L1 4776 5280 -885 202 56 56 0 chr11 26604435 26604471 -122179001 + A-rich Low_complexity Low_complexity 3 40 0 1922 136 44 14 chr11 26604471 26605239 -122178233 + L1PA15 LINE L1 5280 6152 -13 635 252 29 33 chr11 26605307 26605336 -122178136 - MIR SINE MIR -41 221 193 2820 107 12 16 chr11 26605336 26605766 -122177706 - MSTA LTR MaLR 0 428 1 635 252 29 33 chr11 26605766 26605929 -122177543 - MIR SINE MIR -69 193 31 208 289 0 0 chr11 26605917 26605969 -122177503 - L2 LINE L2 0 3272 3221 * 208 333 0 0 chr11 26607910 26607982 -122175490 - L2 LINE L2 -954 2360 2289 559 307 0 22 chr11 26608103 26608282 -122175190 + L3 LINE CR1 639 813 -764 394 272 164 15 chr11 26608283 26608478 -122174994 + L3 LINE CR1 1183 1406 -171 1017 280 80 48 chr11 26608496 26608661 -122174811 - L2 LINE L2 -1 3312 3154 2212 104 0 7 chr11 26608661 26608958 -122174514 + AluSx SINE Alu 1 295 -17 1017 280 80 48 chr11 26608958 26609535 -122173937 - L2 LINE L2 -159 3154 2536 266 275 14 99 chr11 26610127 26610269 -122173203 + L2 LINE L2 2672 2801 -513 382 236 63 24 chr11 26610269 26610396 -122173076 - MER94 DNA DNA 0 134 3 265 301 115 2 chr11 26610435 26610585 -122172887 + L2 LINE L2 2829 2993 -279 204 40 0 0 chr11 26610589 26610614 -122172858 + (TCC)n Simple_repeat Simple_repeat 1 25 0 189 147 0 0 chr11 26610957 26610991 -122172481 + (TA)n Simple_repeat Simple_repeat 1 34 0 399 163 31 108 chr11 26611040 26611129 -122172343 - L1MB8 LINE L1 -167 5995 5920 2007 97 3 88 chr11 26611129 26611449 -122172023 + AluSg1 SINE Alu 1 293 -16 399 163 31 108 chr11 26611449 26611506 -122171966 - L1MB8 LINE L1 -242 5920 5860 30419 95 5 11 chr11 26611515 26617259 -122166213 - L1PA7 LINE L1 0 6469 739 443 270 45 67 chr11 26617264 26617362 -122166110 - MARNA DNA Mariner -156 430 331 1577 169 29 7 chr11 26617362 26617670 -122165802 - AluJb SINE Alu 0 314 1 443 270 45 67 chr11 26617670 26617837 -122165635 - MARNA DNA Mariner -255 331 170 259 215 31 0 chr11 26619239 26619304 -122164168 + MER112 DNA MER1_type 7 73 -187 212 265 6 161 chr11 26619558 26619720 -122163752 - MIR3 SINE MIR -54 154 18 887 193 34 42 chr11 26619783 26620022 -122163450 + MLT1A2 LTR MaLR 138 374 0 204 274 20 0 chr11 26620233 26620284 -122163188 + L2 LINE L2 3209 3260 -12 311 303 156 18 chr11 26620342 26620451 -122163021 + L2 LINE L2 3139 3262 -10 351 274 19 13 chr11 26620916 26621073 -122162399 + L1ME4a LINE L1 5960 6117 -4 285 357 7 0 chr11 26621089 26621229 -122162243 + L2 LINE L2 2359 2499 -815 998 203 0 24 chr11 26621261 26621468 -122162004 - MLT1A2 LTR MaLR 0 374 173 555 228 168 54 chr11 26621496 26621822 -122161650 - MLT1G1 LTR MaLR -29 521 161 504 211 32 68 chr11 26621824 26622014 -122161458 - L1MC5 LINE L1 -600 7361 7179 376 220 240 33 chr11 26622790 26622940 -122160532 - MER5A DNA MER1_type -1 188 8 200 330 87 17 chr11 26623377 26623492 -122159980 - MIR SINE MIR -75 187 65 505 234 120 25 chr11 26623739 26623897 -122159575 + MIR SINE MIR 90 262 0 1944 147 19 25 chr11 26624178 26624492 -122158980 - AluSx SINE Alu 0 312 1 271 353 0 39 chr11 26624542 26624698 -122158774 - MIR SINE MIR -46 216 67 262 164 45 15 chr11 26624765 26624832 -122158640 + MER116 DNA Mariner 12 80 0 379 308 122 6 chr11 26624836 26625008 -122158464 - MIR SINE MIR -58 204 13 574 310 49 5 chr11 26625112 26625296 -122158176 - MIR SINE MIR -60 202 11 639 216 72 7 chr11 26625310 26625449 -122158023 + MER5B DNA MER1_type 31 178 0 623 272 116 46 chr11 26627122 26628042 -122155430 - L1MEd LINE L1 -978 5151 4167 1735 131 98 12 chr11 26628149 26628369 -122155103 + L1PA16 LINE L1 5810 6069 -97 2064 92 0 0 chr11 26628369 26628629 -122154843 + AluSc SINE Alu 37 296 -13 1735 131 98 12 chr11 26628629 26628736 -122154736 + L1PA16 LINE L1 6069 6165 -1 318 146 135 34 chr11 26628842 26628931 -122154541 - L1MEd LINE L1 -2186 3943 3846 425 296 123 31 chr11 26629071 26629463 -122154009 - L1MEd LINE L1 -2513 3616 3182 228 195 0 0 chr11 26629874 26629915 -122153557 + LTR16A LTR ERVL 397 437 -13 249 264 15 91 chr11 26630037 26630150 -122153322 - L1MEd LINE L1 -3068 3061 2968 1989 111 9 22 chr11 26630150 26630465 -122153007 - AluSx SINE Alu 0 312 2 249 264 15 91 chr11 26630465 26630548 -122152924 - L1MEd LINE L1 -3161 2968 2880 617 311 54 11 chr11 26630548 26630871 -122152601 + MLT1I LTR MaLR 1 390 -19 319 286 23 96 chr11 26630885 26630966 -122152506 - L1MEd LINE L1 -3244 2885 2800 2404 69 10 7 chr11 26630966 26631269 -122152203 - AluSp SINE Alu -9 304 1 319 286 23 96 chr11 26631269 26631407 -122152065 - L1MEd LINE L1 -3329 2800 2682 307 236 13 191 chr11 26631652 26631809 -122151663 - L1MEd LINE L1 -5510 609 481 27 0 0 26 chr11 26632156 26632176 -122151296 + AT_rich Low_complexity Low_complexity 1 21 -16 201 39 0 0 chr11 26632180 26632206 -122151266 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1995 136 14 0 chr11 26632206 26632488 -122150984 - AluSx SINE Alu -21 287 1 27 0 0 26 chr11 26632488 26632505 -122150967 + AT_rich Low_complexity Low_complexity 21 37 0 497 328 150 12 chr11 26633165 26633412 -122150060 + L2 LINE L2 2992 3272 0 640 243 56 55 chr11 26634422 26634534 -122148938 + MIR SINE MIR 11 121 -141 2508 103 41 0 chr11 26634534 26634875 -122148597 - LTR18A LTR ERVL 0 357 3 640 243 56 55 chr11 26634875 26635009 -122148463 + MIR SINE MIR 121 249 -13 478 314 159 14 chr11 26635945 26636165 -122147307 + L3 LINE CR1 1303 1554 -23 1874 127 84 0 chr11 26636537 26636821 -122146651 + AluSx SINE Alu 1 308 -4 449 77 0 86 chr11 26636833 26636950 -122146522 + (GGGGA)n Simple_repeat Simple_repeat 4 110 0 401 226 157 88 chr11 26637195 26637354 -122146118 + MER5A DNA MER1_type 14 183 -6 2242 157 33 19 chr11 26637407 26637827 -122145645 + MSTB LTR MaLR 1 426 0 1981 145 0 3 chr11 26638978 26639260 -122144212 - AluSx SINE Alu -31 281 1 342 321 64 14 chr11 26639967 26640147 -122143325 - MIR3 SINE MIR -61 147 3 2898 129 0 5 chr11 26640178 26640605 -122142867 - MSTC LTR MaLR -1 427 3 28 29 0 0 chr11 26641277 26641312 -122142160 + AT_rich Low_complexity Low_complexity 1 35 0 1010 33 0 0 chr11 26641312 26641432 -122142040 - L1PA5 LINE L1 -8 6146 6027 384 308 75 0 chr11 26641496 26641616 -122141856 + L2 LINE L2 3181 3309 -4 364 248 0 0 chr11 26642555 26642656 -122140816 + MER113 DNA MER1_type? 6 106 -415 2447 35 41 0 chr11 26642770 26643060 -122140412 + AluY SINE Alu 1 302 -9 525 308 109 51 chr11 26643385 26644044 -122139428 - L1M2 LINE L1 -5716 1133 445 378 232 53 33 chr11 26644203 26644354 -122139118 + L1ME4a LINE L1 5956 6109 -12 539 205 83 26 chr11 26645030 26645186 -122138286 + L1MC4 LINE L1 7878 8042 0 221 191 0 48 chr11 26645647 26645689 -122137783 - L2 LINE L2 -94 3219 3180 311 340 97 34 chr11 26645768 26646379 -122137093 + L2 LINE L2 2203 2851 -463 250 304 29 0 chr11 26646506 26646575 -122136897 + MIR SINE MIR 16 86 -176 1349 85 0 0 chr11 26646578 26646755 -122136717 - AluY SINE Alu -2 309 133 411 284 57 35 chr11 26646775 26646916 -122136556 + MIR SINE MIR 106 249 -13 233 381 68 0 chr11 26647004 26647122 -122136350 + L2 LINE L2 3141 3266 -6 202 271 0 0 chr11 26648154 26648202 -122135270 - L2 LINE L2 -3 3310 3263 362 316 86 7 chr11 26649086 26649225 -122134247 + MIR3 SINE MIR 9 158 -50 287 200 27 127 chr11 26652357 26652507 -122130965 + L1MC5 LINE L1 7732 7866 -95 241 245 49 43 chr11 26652611 26652732 -122130740 + MIR SINE MIR 38 162 -62 23 33 0 0 chr11 26654586 26654616 -122128856 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 26656434 26656458 -122127014 + AT_rich Low_complexity Low_complexity 1 24 0 295 310 145 0 chr11 26656652 26656797 -122126675 + MIR SINE MIR 91 256 -6 204 278 104 62 chr11 26656869 26657013 -122126459 - MIR SINE MIR -56 206 57 343 220 318 8 chr11 26658449 26658581 -122124891 - MER5A DNA MER1_type -1 188 16 1834 183 0 16 chr11 26658952 26659264 -122124208 - AluJo SINE Alu -5 307 1 284 107 36 18 chr11 26659614 26659670 -122123802 + MIR SINE MIR 85 141 -67 1945 159 0 7 chr11 26659959 26660261 -122123211 - AluJb SINE Alu -12 300 1 1921 142 0 43 chr11 26662102 26662427 -122121045 + AluJo SINE Alu 2 312 0 236 291 8 102 chr11 26662457 26662584 -122120888 + L2 LINE L2 3155 3269 -3 984 238 9 5 chr11 26662630 26662853 -122120619 - MER58A DNA MER1_type 0 224 1 1560 103 9 5 chr11 26663077 26663290 -122120182 - AluSp SINE Alu -14 299 86 184 244 12 12 chr11 26663478 26663564 -122119908 + GA-rich Low_complexity Low_complexity 2 87 0 214 238 20 20 chr11 26664553 26664654 -122118818 + (TA)n Simple_repeat Simple_repeat 2 102 0 1777 171 45 9 chr11 26664920 26665254 -122118218 + MER7A DNA MER2_type 2 345 -1 23 54 0 0 chr11 26667464 26667501 -122115971 + AT_rich Low_complexity Low_complexity 1 37 0 1867 120 41 57 chr11 26668512 26668829 -122114643 + AluJb SINE Alu 1 312 0 2390 104 0 0 chr11 26669836 26670145 -122113327 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 26674220 26674243 -122109229 + AT_rich Low_complexity Low_complexity 1 23 0 654 341 36 50 chr11 26674301 26674817 -122108655 - L2 LINE L2 -46 3267 2766 214 270 22 67 chr11 26677554 26677643 -122105829 - MER5A DNA MER1_type -98 91 7 21 36 0 0 chr11 26678334 26678362 -122105110 + AT_rich Low_complexity Low_complexity 1 28 0 307 283 51 19 chr11 26678964 26679080 -122104392 - MIR SINE MIR -83 125 13 45 34 0 0 chr11 26680616 26680675 -122102797 + AT_rich Low_complexity Low_complexity 1 59 0 187 160 60 60 chr11 26680752 26680802 -122102670 - L2 LINE L2 0 3313 3264 198 62 0 31 chr11 26681483 26681515 -122101957 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2043 99 0 0 chr11 26681515 26681768 -122101704 - AluSx SINE Alu -1 316 33 253 289 7 0 chr11 26683179 26683258 -122100214 - MIR SINE MIR -84 124 41 30 0 0 0 chr11 26683622 26683652 -122099820 + AT_rich Low_complexity Low_complexity 1 30 0 1970 131 3 34 chr11 26685994 26686315 -122097157 - AluSq SINE Alu -2 311 1 2294 85 3 16 chr11 26686611 26686917 -122096555 - AluSx SINE Alu -10 302 1 1359 140 44 18 chr11 26687142 26687371 -122096101 + MER46A DNA MER2_type 1 235 -1 2340 93 20 0 chr11 26687595 26687895 -122095577 - AluSx SINE Alu -6 306 1 202 274 59 0 chr11 26688639 26688690 -122094782 - L2 LINE L2 -6 3307 3254 443 261 186 13 chr11 26689152 26689378 -122094094 + MLT1L LTR MaLR 4 268 -347 615 235 55 16 chr11 26689490 26689673 -122093799 + MLT1L LTR MaLR 421 610 -5 679 309 29 63 chr11 26689681 26690173 -122093299 + MLT1J LTR MaLR 29 503 -8 1705 139 105 0 chr11 26690286 26690553 -122092919 + AluJb SINE Alu 1 295 -17 242 250 62 0 chr11 26690748 26690828 -122092644 + L1ME4a LINE L1 5947 6031 -90 389 223 79 102 chr11 26691928 26692143 -122091329 + MLT1K LTR MaLR 379 588 0 341 325 131 57 chr11 26692316 26692950 -122090522 + L2 LINE L2 1963 2643 -671 408 209 137 43 chr11 26693474 26693613 -122089859 + MIR SINE MIR 37 188 -74 368 305 1 11 chr11 26694154 26694264 -122089208 + MIR SINE MIR 49 158 -50 441 264 84 17 chr11 26694439 26694617 -122088855 + MIR SINE MIR 1 190 -72 1057 254 58 30 chr11 26694668 26695097 -122088375 + L1MC4 LINE L1 7588 8028 -14 213 236 139 28 chr11 26696604 26696676 -122086796 + L2 LINE L2 2394 2473 -841 349 347 94 50 chr11 26696727 26697059 -122086413 + L2 LINE L2 2814 3171 -101 1151 142 19 33 chr11 26697059 26697270 -122086202 + MER3 DNA MER1_type 1 208 -1 349 347 94 50 chr11 26697270 26697375 -122086097 + L2 LINE L2 3171 3270 -2 24 32 0 0 chr11 26697710 26697741 -122085731 + AT_rich Low_complexity Low_complexity 1 31 0 476 283 81 39 chr11 26748417 26748851 -122034621 + L1ME4a LINE L1 5588 6091 -30 499 297 108 0 chr11 26748854 26749086 -122034386 + MIR SINE MIR 6 262 0 2210 114 0 10 chr11 26749145 26749443 -122034029 + AluSq SINE Alu 1 295 -18 2396 224 55 32 chr11 26749919 26750487 -122032985 - MLT1E LTR MaLR 0 593 13 2415 105 0 0 chr11 26750624 26750930 -122032542 - AluSq SINE Alu -7 306 1 222 300 12 12 chr11 26751220 26751300 -122032172 + MIR SINE MIR 174 253 -9 234 0 0 0 chr11 26752239 26752265 -122031207 + (TG)n Simple_repeat Simple_repeat 1 26 0 205 309 0 0 chr11 26752352 26752407 -122031065 + L2 LINE L2 3218 3272 0 549 288 103 32 chr11 26752412 26752752 -122030720 - L2 LINE L2 0 3313 2950 358 264 141 62 chr11 26752990 26753217 -122030255 + HAL1 LINE L1 614 858 -1649 24 67 0 0 chr11 26754357 26754402 -122029070 + AT_rich Low_complexity Low_complexity 1 45 0 235 274 82 0 chr11 26754816 26754889 -122028583 - MIR SINE MIR -137 125 47 1076 200 76 0 chr11 26755255 26755465 -122028007 - Charlie1a DNA MER1_type -1229 226 1 269 356 55 0 chr11 26755535 26755681 -122027791 + MIR SINE MIR 108 261 -1 279 54 0 0 chr11 26755853 26755890 -122027582 + (CTG)n Simple_repeat Simple_repeat 1 37 0 390 339 56 22 chr11 26756308 26756488 -122026984 + LTR33 LTR ERVL 2 187 -334 544 268 49 45 chr11 26756522 26756787 -122026685 + LTR33 LTR ERVL 256 521 0 305 246 27 27 chr11 26756833 26756943 -122026529 + MER113 DNA MER1_type? 8 117 -404 2415 110 0 0 chr11 26756978 26757288 -122026184 + AluSq SINE Alu 1 310 -3 195 100 0 0 chr11 26757288 26757318 -122026154 + (GA)n Simple_repeat Simple_repeat 1 30 0 2013 166 61 0 chr11 26757357 26757701 -122025771 + MLT1A1 LTR MaLR 1 365 0 778 232 37 42 chr11 26757767 26758008 -122025464 + MIR SINE MIR 2 241 -21 2377 90 3 7 chr11 26758025 26758325 -122025147 - AluSx SINE Alu -13 299 1 541 240 29 78 chr11 26758403 26758607 -122024865 + MER113 DNA MER1_type? 323 516 -5 772 228 27 5 chr11 26758926 26759110 -122024362 + MER5A DNA MER1_type 2 189 0 449 264 31 37 chr11 26759180 26759343 -122024129 - MIR SINE MIR -12 250 89 1914 163 0 0 chr11 26759450 26759751 -122023721 - AluJb SINE Alu -11 301 1 799 207 18 12 chr11 26759754 26759918 -122023554 + MER3 DNA MER1_type 14 131 -78 680 150 82 48 chr11 26760538 26760685 -122022787 - MER58C DNA MER1_type -1 214 63 309 304 44 39 chr11 26760745 26760926 -122022546 - MER5A DNA MER1_type -1 188 7 420 208 10 30 chr11 26760930 26761031 -122022441 - MIR3 SINE MIR -19 189 91 311 276 0 0 chr11 26761178 26761254 -122022218 + MLT1L LTR MaLR 540 615 0 394 328 23 17 chr11 26761409 26761583 -122021889 + MIR3 SINE MIR 3 177 -31 2043 153 29 6 chr11 26763339 26763686 -122019786 + THE1A LTR MaLR 1 355 0 436 354 31 9 chr11 26763688 26763917 -122019555 - MIR SINE MIR -16 246 13 43658 36 21 1 chr11 26764473 26770502 -122012970 - L1PA2 LINE L1 0 6155 4 331 331 0 32 chr11 26770505 26770659 -122012813 - MIR SINE MIR -86 176 28 2514 75 14 104 chr11 26771002 26771416 -122012056 - MER51B LTR ERV1 0 377 1 623 301 25 13 chr11 26772308 26772544 -122010928 + MIR SINE MIR 7 245 -17 187 286 71 0 chr11 26772594 26772650 -122010822 + MIR SINE MIR 200 259 -3 345 331 12 41 chr11 26772650 26772822 -122010650 - MIR3 SINE MIR -3 205 39 636 271 59 0 chr11 26772987 26773211 -122010261 + MIR SINE MIR 21 256 -6 245 262 90 41 chr11 26773743 26773865 -122009607 - MIR SINE MIR -115 147 20 753 253 18 31 chr11 26775113 26775342 -122008130 + MIR SINE MIR 12 237 -25 420 284 97 7 chr11 26775515 26775670 -122007802 + MIR SINE MIR 17 185 -77 243 0 0 0 chr11 26775682 26775709 -122007763 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 213 21 0 chr11 26775717 26775764 -122007708 + (TA)n Simple_repeat Simple_repeat 1 48 0 290 329 36 21 chr11 26776135 26776275 -122007197 + L2 LINE L2 3171 3312 -1 339 253 11 0 chr11 26776937 26777032 -122006440 + MIR SINE MIR 58 153 -109 811 255 100 4 chr11 26777071 26777302 -122006170 - MIR SINE MIR -5 257 5 212 253 169 36 chr11 26777511 26777677 -122005795 + MIR SINE MIR 21 208 -54 193 258 135 22 chr11 26778552 26778641 -122004831 - MIR SINE MIR 0 262 164 1735 187 7 3 chr11 26778663 26778962 -122004510 - AluJo SINE Alu -12 300 1 233 336 132 43 chr11 26779175 26779410 -122004062 - L2 LINE L2 0 3272 3017 230 200 0 50 chr11 26779505 26779585 -122003887 + A-rich Low_complexity Low_complexity 3 78 0 2378 92 0 7 chr11 26779707 26780010 -122003462 + AluSq SINE Alu 1 301 -12 509 265 99 99 chr11 26780783 26781175 -122002297 - MLT1L LTR MaLR -8 607 216 276 228 0 3 chr11 26781165 26781232 -122002240 - MLT1J LTR MaLR -313 163 72 * 294 179 18 0 chr11 26781189 26781245 -122002227 - LTR67 LTR ERVL -400 157 101 2544 149 17 2 chr11 26782166 26782576 -122000896 - MSTB1 LTR MaLR -2 430 15 2109 205 37 60 chr11 26783063 26783132 -122000340 - MLT1D LTR MaLR 0 505 436 1630 151 92 0 chr11 26783132 26783403 -122000069 + AluSx SINE Alu 1 296 -16 2109 205 37 60 chr11 26783403 26783850 -121999622 - MLT1D LTR MaLR -69 436 1 647 251 28 11 chr11 26784003 26784182 -121999290 + MIR SINE MIR 78 259 -3 441 0 0 0 chr11 26784803 26784852 -121998620 + (TG)n Simple_repeat Simple_repeat 2 50 0 246 160 0 0 chr11 26784858 26784908 -121998564 + GA-rich Low_complexity Low_complexity 2 51 0 336 315 104 27 chr11 26785567 26785789 -121997683 - MIR SINE MIR -7 255 17 486 307 135 8 chr11 26786866 26787133 -121996339 - L1MC/D LINE L1 -2010 5798 5498 24 32 0 0 chr11 26787756 26787787 -121995685 + AT_rich Low_complexity Low_complexity 1 31 0 224 178 0 44 chr11 26788291 26788336 -121995136 + polypurine Low_complexity Low_complexity 3 45 0 29 0 0 0 chr11 26789111 26789140 -121994332 + AT_rich Low_complexity Low_complexity 1 29 0 1878 131 11 14 chr11 26789404 26789706 -121993766 + AluSx SINE Alu 1 301 0 335 211 28 0 chr11 26790596 26790667 -121992805 - MIR SINE MIR -111 151 79 1729 295 132 21 chr11 26791131 26791951 -121991521 - L2 LINE L2 -407 2907 1983 2383 90 0 7 chr11 26791951 26792261 -121991211 + AluSg SINE Alu 1 308 -2 1729 295 132 21 chr11 26792261 26792311 -121991161 - L2 LINE L2 -1331 1983 1940 835 50 0 0 chr11 26792760 26792861 -121990611 - L1PB1 LINE L1 0 6151 6051 2066 127 6 22 chr11 26793103 26793419 -121990053 + AluSp SINE Alu 1 311 -2 231 36 0 0 chr11 26793466 26793494 -121989978 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1018 289 71 44 chr11 26794038 26794768 -121988704 - L2 LINE L2 0 3313 2568 629 277 77 0 chr11 26794978 26795173 -121988299 + MER63A DNA MER1_type 1 210 0 1074 265 93 52 chr11 26795796 26796464 -121987008 + L1ME3A LINE L1 4960 5565 -605 713 216 57 101 chr11 26796464 26796691 -121986781 - MER20 DNA MER1_type -2 217 1 1074 265 93 52 chr11 26796691 26797095 -121986377 + L1ME3A LINE L1 5565 5951 -219 271 255 5 0 chr11 26797430 26797507 -121985965 + MIR SINE MIR 78 141 -67 309 263 102 36 chr11 26797525 26797662 -121985810 - MER117 DNA MER1_type 0 197 52 187 300 78 0 chr11 26798573 26798663 -121984809 - MIR3 SINE MIR -11 197 101 2207 124 0 9 chr11 26798745 26799060 -121984412 - AluSx SINE Alu 0 312 1 533 247 52 26 chr11 26799127 26799281 -121984191 - MIR SINE MIR -16 246 89 257 267 137 43 chr11 26799562 26799723 -121983749 + MER117 DNA MER1_type 17 192 -5 259 224 212 12 chr11 26799791 26799876 -121983596 + MER5A DNA MER1_type 8 109 -80 23 0 0 0 chr11 26799942 26799965 -121983507 + AT_rich Low_complexity Low_complexity 1 23 0 948 259 40 27 chr11 26800052 26800353 -121983119 - L1ME1 LINE L1 -4 6162 5858 858 90 14 14 chr11 26800369 26800513 -121982959 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 2077 130 7 0 chr11 26800799 26801098 -121982374 + AluSx SINE Alu 3 303 -9 365 58 19 0 chr11 26801099 26801151 -121982321 + (AATAG)n Simple_repeat Simple_repeat 2 54 0 296 353 42 0 chr11 26801463 26801595 -121981877 - MIR SINE MIR -64 144 21 2149 104 4 0 chr11 26802361 26802668 -121980804 + AluSx SINE Alu 1 308 0 312 339 51 8 chr11 26803333 26803451 -121980021 - MIR SINE MIR -70 138 16 189 315 70 70 chr11 26803855 26804112 -121979360 - L2 LINE L2 -23 3290 3034 248 354 38 0 chr11 26805382 26805461 -121978011 + MIR SINE MIR 17 98 -110 557 256 139 6 chr11 26805539 26805711 -121977761 - MIR SINE MIR -49 213 19 4537 30 2 0 chr11 26805863 26806515 -121976957 + L1PA4 LINE L1 4861 5514 -641 1494 28 0 39 chr11 26806616 26806795 -121976677 + L1PA4 LINE L1 5981 6152 -3 1885 165 0 7 chr11 26807073 26807370 -121976102 - AluJo SINE Alu -17 295 1 263 267 267 7 chr11 26807379 26807514 -121975958 - MIR SINE MIR -14 248 79 417 273 58 36 chr11 26808339 26808478 -121974994 - MIR3 SINE MIR -51 157 16 1584 142 22 36 chr11 26808591 26808866 -121974606 - L1PA16 LINE L1 -2 6164 5894 601 281 72 25 chr11 26808959 26809194 -121974278 + MIR SINE MIR 14 259 -3 189 107 0 0 chr11 26809259 26809287 -121974185 + MIR SINE MIR 114 141 -121 334 335 95 92 chr11 26809365 26809723 -121973749 - L2 LINE L2 0 3272 2914 2002 236 60 38 chr11 26809743 26810356 -121973116 - HsTC2 DNA Tc2 0 1898 1272 194 250 0 0 chr11 26810658 26810706 -121972766 - L2 LINE L2 -615 2699 2652 787 11 0 0 chr11 26811089 26811183 -121972289 - L1P1 LINE L1 -724 5431 5338 3795 27 0 0 chr11 26811183 26811641 -121971831 + L1PA4 LINE L1 5724 6181 0 447 216 0 10 chr11 26811815 26811912 -121971560 - LTR16B LTR ERVL 0 464 369 5657 0 40 0 chr11 26811912 26812129 -121971343 + L1PA16 LINE L1 4959 5017 -1149 5657 144 21 3 chr11 26812129 26813307 -121970165 + L1PA16 LINE L1 4959 6153 -13 5657 0 40 0 chr11 26813307 26813741 -121969731 + L1PA16 LINE L1 5017 6153 -13 2741 148 62 27 chr11 26813308 26813796 -121969676 + L1MA6 LINE L1 5495 5999 -292 * 1771 109 29 0 chr11 26813898 26814172 -121969300 + L1MA6 LINE L1 6019 6300 0 782 351 30 15 chr11 26814188 26814524 -121968948 - LTR16B LTR ERVL -80 384 44 2250 113 23 0 chr11 26814557 26814858 -121968614 - AluJb SINE Alu -4 308 1 525 240 103 26 chr11 26815081 26815275 -121968197 + MLT1H1 LTR MaLR 10 259 -290 1539 242 37 5 chr11 26815281 26815686 -121967786 + L1MD3 LINE L1 7568 7985 -10 797 233 49 22 chr11 26815789 26816012 -121967460 + MLT1H1 LTR MaLR 327 555 0 425 186 32 57 chr11 26816334 26816458 -121967014 - MER103 DNA DNA -43 123 3 1895 145 10 10 chr11 26816460 26816764 -121966708 - AluJb SINE Alu -8 304 1 206 357 0 12 chr11 26816918 26817002 -121966470 + L3 LINE CR1 1494 1576 -1 2037 140 3 7 chr11 26817098 26817406 -121966066 - AluSx SINE Alu 0 312 6 2328 103 0 0 chr11 26817851 26818151 -121965321 - AluSc SINE Alu -9 300 1 572 268 101 31 chr11 26818438 26818642 -121964830 + MIR SINE MIR 15 238 -24 1315 218 114 61 chr11 26818642 26819018 -121964454 - MSTD LTR MaLR 0 396 1 572 268 101 31 chr11 26819018 26819041 -121964431 + MIR SINE MIR 238 258 -4 515 347 59 9 chr11 26819320 26819542 -121963930 + MIR SINE MIR 20 252 -10 327 229 237 0 chr11 26820284 26820402 -121963070 + MIR SINE MIR 117 262 0 1590 158 53 3 chr11 26820451 26820735 -121962737 - L1MD3 LINE L1 -973 7022 6725 1009 234 120 58 chr11 26821053 26821614 -121961858 - MLT1H1 LTR MaLR -2 553 1 2275 105 3 3 chr11 26822256 26822561 -121960911 + AluSq SINE Alu 1 305 -8 198 128 0 0 chr11 26822883 26822922 -121960550 + (CA)n Simple_repeat Simple_repeat 2 40 0 927 105 0 23 chr11 26823289 26823422 -121960050 + AluY SINE Alu 1 130 -181 1102 119 57 23 chr11 26824134 26824311 -121959161 + MLT2A1 LTR ERVL 180 362 -82 796 43 0 0 chr11 26824316 26824408 -121959064 + L1P LINE L1 7 98 -6048 * 14845 47 6 0 chr11 26824406 26826208 -121957264 + L1P LINE L1 623 2435 -3711 22 0 0 0 chr11 26826250 26826272 -121957200 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr11 26826797 26826835 -121956637 + AT_rich Low_complexity Low_complexity 1 38 0 1823 154 48 3 chr11 26826982 26827275 -121956197 + AluJb SINE Alu 1 306 -6 198 284 30 30 chr11 26827612 26827679 -121955793 - MIR3 SINE MIR -37 171 105 2237 204 68 29 chr11 26828285 26828771 -121954701 - MLT1D LTR MaLR 0 505 1 205 383 0 0 chr11 26829035 26829116 -121954356 - L2 LINE L2 -4 3268 3188 203 316 59 59 chr11 26829138 26829274 -121954198 + L2 LINE L2 3167 3302 -11 1134 211 14 14 chr11 26829332 26829555 -121953917 + MER58A DNA MER1_type 2 224 0 245 348 79 42 chr11 26830410 26830764 -121952708 - L2 LINE L2 -601 2713 2347 2705 124 86 0 chr11 26830818 26831212 -121952260 + MSTA LTR MaLR 1 428 0 8728 170 22 24 chr11 26831212 26832865 -121950607 + MSTA-int LTR MaLR 1 1651 0 2706 118 57 0 chr11 26832865 26833270 -121950202 + MSTA LTR MaLR 1 428 0 287 198 12 37 chr11 26833750 26833831 -121949641 + CT-rich Low_complexity Low_complexity 1 79 0 3597 157 52 19 chr11 26834182 26834876 -121948596 - L1MC1 LINE L1 0 6333 5617 48 67 0 0 chr11 26834982 26835072 -121948400 + AT_rich Low_complexity Low_complexity 1 90 0 3391 56 20 2 chr11 26835080 26835524 -121947948 - L1PA8 LINE L1 -2 6170 5719 1482 212 126 44 chr11 26835907 26836425 -121947047 - L1ME1 LINE L1 -4 6162 5603 1484 264 78 69 chr11 26836426 26836484 -121946988 - L1ME LINE L1 -4378 1702 1646 1672 206 0 3 chr11 26836484 26836775 -121946697 + AluJo SINE Alu 2 291 -21 1484 264 78 69 chr11 26836775 26838040 -121945432 - L1ME LINE L1 -4434 1646 388 2134 97 48 0 chr11 26838040 26838330 -121945142 - AluSx SINE Alu -8 304 1 1484 264 78 69 chr11 26838330 26838625 -121944847 - L1ME LINE L1 -5692 388 97 2263 98 3 0 chr11 26838657 26838963 -121944509 - AluSp SINE Alu -6 307 1 2177 105 13 3 chr11 26838965 26839270 -121944202 - AluSq SINE Alu -3 310 3 2939 269 47 37 chr11 26839276 26841082 -121942390 - L1M4c LINE L1 -4058 3111 1621 195 360 40 0 chr11 26842452 26842527 -121940945 - L2 LINE L2 0 3313 3236 467 300 60 20 chr11 26842905 26843080 -121940392 + MER5A DNA MER1_type 2 184 -5 323 306 75 15 chr11 26843258 26843392 -121940080 + MIR SINE MIR 1 142 -120 452 200 206 17 chr11 26843394 26843569 -121939903 + MER113 DNA MER1_type? 1 208 -313 21 82 0 0 chr11 26843569 26843618 -121939854 + AT_rich Low_complexity Low_complexity 1 49 0 186 43 0 0 chr11 26844691 26844714 -121938758 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1888 147 27 21 chr11 26845142 26845725 -121937747 - L1MCa LINE L1 -4499 1927 1252 5309 135 185 8 chr11 26845726 26846776 -121936696 - MER11B LTR ERVK 0 1236 1 1703 146 41 39 chr11 26846784 26847146 -121936326 - L1MCa LINE L1 -5182 1244 882 1361 205 3 13 chr11 26847145 26847755 -121935717 - L1 LINE L1 -1230 4804 4073 * 2564 262 120 30 chr11 26847751 26849014 -121934458 - L1 LINE L1 -3793 2241 1328 225 0 0 0 chr11 26849014 26849039 -121934433 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2564 262 120 30 chr11 26849039 26850169 -121933303 - L1 LINE L1 -4706 1328 300 1576 259 10 13 chr11 26850187 26850580 -121932892 - L1 LINE L1 -5551 404 13 297 287 10 30 chr11 26850589 26850690 -121932782 - L2 LINE L2 -249 3023 2925 460 343 117 51 chr11 26851518 26852151 -121931321 + L2 LINE L2 2200 2874 -440 190 318 0 30 chr11 26852165 26852224 -121931248 - MIR SINE MIR -4 258 202 378 272 30 49 chr11 26852224 26852405 -121931067 + MER5A DNA MER1_type 1 189 0 369 275 163 31 chr11 26852405 26852564 -121930908 - MIR SINE MIR -55 207 28 360 357 174 22 chr11 26852599 26852921 -121930551 + L2 LINE L2 2901 3271 -1 2152 127 0 3 chr11 26853838 26854146 -121929326 + AluSq SINE Alu 1 307 -6 2564 55 3 0 chr11 26855210 26855518 -121927954 + AluY SINE Alu 2 310 -1 379 327 102 6 chr11 26855581 26855758 -121927714 - MIR SINE MIR -29 233 41 180 327 19 37 chr11 26856427 26856534 -121926938 - L3 LINE CR1 -585 992 888 238 294 44 0 chr11 26856987 26857055 -121926417 - MIR3 SINE MIR -49 159 89 348 293 13 0 chr11 26857121 26857196 -121926276 + L2 LINE L2 3186 3261 -11 1472 174 10 30 chr11 26857359 26857658 -121925814 + AluSx SINE Alu 1 293 -19 293 315 54 44 chr11 26859700 26859903 -121923569 - MIR SINE MIR -1 261 57 1347 245 100 59 chr11 26860518 26861351 -121922121 + L2 LINE L2 2458 3313 0 32 0 0 0 chr11 26861568 26861600 -121921872 + AT_rich Low_complexity Low_complexity 1 32 0 926 284 152 14 chr11 26861661 26862009 -121921463 + MLT1K LTR MaLR 71 466 -122 45 62 0 0 chr11 26862553 26862633 -121920839 + AT_rich Low_complexity Low_complexity 1 80 0 213 341 72 30 chr11 26863031 26863198 -121920274 - L2 LINE L2 -429 2885 2712 300 298 60 42 chr11 26864232 26864400 -121919072 + MIR SINE MIR 46 216 -46 775 289 145 13 chr11 26865258 26865569 -121917903 + MLT1H LTR MaLR 3 354 -195 349 272 79 0 chr11 26865605 26865698 -121917774 + MLT1H LTR MaLR 425 530 -19 3848 68 0 4 chr11 26865698 26866197 -121917275 - L1PA7 LINE L1 -1 6153 5657 349 272 79 0 chr11 26866197 26866217 -121917255 + MLT1H LTR MaLR 530 547 -2 192 40 0 0 chr11 26866394 26866419 -121917053 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1309 196 4 19 chr11 26867041 26867307 -121916165 - L1MB5 LINE L1 -8 6166 5905 3935 235 26 15 chr11 26867308 26868355 -121915117 - L1MB5 LINE L1 -1029 5117 4060 5931 112 7 0 chr11 26868360 26869730 -121913742 - L1PA15 LINE L1 0 6165 4788 933 271 104 41 chr11 26869955 26870472 -121913000 - L1MC5 LINE L1 -431 7530 6981 352 138 15 0 chr11 26870497 26870562 -121912910 + L1MB5 LINE L1 6047 6112 -62 299 73 13 280 chr11 26870576 26870680 -121912792 + L1MB5 LINE L1 6065 6119 -55 2318 119 30 0 chr11 26870680 26871050 -121912422 - L1PA16 LINE L1 -9 6157 5777 299 73 13 280 chr11 26871050 26871095 -121912377 + L1MB5 LINE L1 6119 6174 0 1006 332 46 32 chr11 26871414 26872173 -121911299 - L2 LINE L2 -137 3176 2403 275 374 23 8 chr11 26872722 26872853 -121910619 + MIR SINE MIR 28 160 -102 183 366 98 16 chr11 26873094 26873217 -121910255 + L2 LINE L2 3137 3269 -3 427 179 141 0 chr11 26874373 26874451 -121909021 + 5S rRNA rRNA 2 90 -31 20517 63 4 3 chr11 26874820 26877501 -121905971 - L1P LINE L1 -2885 3261 578 237 33 0 0 chr11 26878302 26878332 -121905140 + (CAA)n Simple_repeat Simple_repeat 1 30 0 245 313 127 52 chr11 26878628 26878989 -121904483 + HAL1b LINE L1 22 445 -903 1969 115 25 7 chr11 26878989 26879275 -121904197 - AluSg SINE Alu -19 291 1 245 313 127 52 chr11 26879275 26879495 -121903977 + HAL1b LINE L1 445 647 -701 1356 194 103 6 chr11 26879956 26880296 -121903176 + L1MA9 LINE L1 5940 6312 0 24 0 0 0 chr11 26880296 26880320 -121903152 + AT_rich Low_complexity Low_complexity 1 24 0 219 248 179 43 chr11 26880945 26881062 -121902410 + MIR SINE MIR 116 248 -14 23 68 0 0 chr11 26883154 26883198 -121900274 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr11 26884120 26884142 -121899330 + AT_rich Low_complexity Low_complexity 1 22 0 688 193 32 80 chr11 26885916 26886103 -121897369 + MER5B DNA MER1_type 1 178 0 182 93 0 47 chr11 26886237 26886280 -121897192 + (CAAAAA)n Simple_repeat Simple_repeat 5 45 0 446 262 88 47 chr11 26886885 26887078 -121896394 + MIR SINE MIR 2 213 -49 663 247 101 32 chr11 26887334 26887642 -121895830 - MER102a DNA MER1_type -1 329 1 1283 195 161 43 chr11 26888064 26888413 -121895059 + MLT1B LTR MaLR 1 390 0 235 307 0 40 chr11 26889221 26889296 -121894176 + L2 LINE L2 3238 3309 -4 3106 136 153 47 chr11 26890996 26892007 -121891465 + MER11A LTR ERVK 1 1266 0 830 205 46 5 chr11 26892868 26893063 -121890409 + MER3 DNA MER1_type 2 204 -5 382 266 165 27 chr11 26893078 26893266 -121890206 + MIR SINE MIR 20 233 -29 282 361 207 5 chr11 26893284 26893492 -121889980 - MIR SINE MIR 0 262 13 14512 138 22 6 chr11 26894571 26896611 -121886861 - Tigger1 DNA MER2_type -1 2417 331 369 0 0 0 chr11 26896611 26896652 -121886820 + (GA)n Simple_repeat Simple_repeat 2 42 0 14512 138 22 6 chr11 26896652 26896989 -121886483 - Tigger1 DNA MER2_type -2087 331 1 652 335 51 11 chr11 26897817 26898172 -121885300 - LTR16C LTR ERVL -9 482 114 286 346 138 35 chr11 26898368 26898825 -121884647 - L2 LINE L2 -1 3312 2809 762 253 63 18 chr11 26899435 26899656 -121883816 - MIR SINE MIR 0 262 32 191 301 126 44 chr11 26899722 26899928 -121883544 - L3 LINE CR1 -6 1571 1349 1389 111 0 0 chr11 26899969 26900168 -121883304 + MSTA LTR MaLR 2 200 -228 5066 59 0 2 chr11 26900168 26900921 -121882551 + L1PA6 LINE L1 5171 5922 -232 470 308 76 25 chr11 26901098 26901296 -121882176 + MIR SINE MIR 18 225 -37 697 305 41 2 chr11 26901309 26901575 -121881897 + L2 LINE L2 1147 1481 -1833 680 294 17 6 chr11 26901574 26901754 -121881718 + L2 LINE L2 3132 3313 0 * 349 342 52 16 chr11 26901957 26902150 -121881322 + MIR SINE MIR 40 239 -23 576 297 103 19 chr11 26902176 26902439 -121881033 - L2 LINE L2 -656 2658 2374 333 271 163 36 chr11 26903230 26903451 -121880021 - MIR SINE MIR -8 254 6 1469 47 0 0 chr11 26903541 26903731 -121879741 - L1PA7 LINE L1 -175 5979 5790 1087 84 19 0 chr11 26903731 26903882 -121879590 + L1PA7 LINE L1 5995 6152 -2 5634 225 47 21 chr11 26904595 26907202 -121876270 + L1PB3 LINE L1 6 1737 -5126 1315 127 52 13 chr11 26907200 26907429 -121876043 + THE1-int LTR MaLR 1044 1281 -299 * 2744 149 34 2 chr11 26907423 26907918 -121875554 - MSTA-int LTR MaLR -1140 511 1 1672 138 138 46 chr11 26907918 26908136 -121875336 - MSTA LTR MaLR 0 428 231 13494 45 7 1 chr11 26908136 26910599 -121872873 - L1PA5 LINE L1 -3 6151 3680 1672 138 138 46 chr11 26910599 26910772 -121872700 - MSTA LTR MaLR -197 231 1 3474 221 19 34 chr11 26910775 26910814 -121872658 + L1PB3 LINE L1 2518 2556 -4306 2216 106 0 26 chr11 26910814 26911116 -121872356 - AluY SINE Alu -17 294 1 3474 221 19 34 chr11 26911116 26912275 -121871197 + L1PB3 LINE L1 2556 3696 -3166 5628 165 24 47 chr11 26912287 26914427 -121869045 + L1PB3 LINE L1 4572 6643 -227 1977 103 15 94 chr11 26914427 26914756 -121868716 - AluSx SINE Alu -9 303 1 5628 165 24 47 chr11 26914756 26914976 -121868496 + L1PB3 LINE L1 6643 6867 -3 447 293 0 0 chr11 26915145 26915251 -121868221 - MIR SINE MIR -98 164 59 213 39 0 0 chr11 26915511 26915537 -121867935 + (T)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr11 26915959 26915986 -121867486 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 22 0 0 0 chr11 26916443 26916465 -121867007 + AT_rich Low_complexity Low_complexity 1 22 0 2610 161 118 53 chr11 26916975 26917650 -121865822 + LTR8A LTR ERV1 9 727 0 2229 86 3 17 chr11 26919349 26919651 -121863821 + AluSc SINE Alu 2 299 -10 183 288 82 14 chr11 26919788 26919861 -121863611 + L3 LINE CR1 1287 1364 -213 21 0 0 0 chr11 26921184 26921205 -121862267 + AT_rich Low_complexity Low_complexity 1 21 0 2544 154 19 2 chr11 26921717 26922138 -121861334 - MSTA LTR MaLR 0 428 1 8420 168 26 42 chr11 26922138 26923815 -121859657 - MSTA-int LTR MaLR 0 1651 1 1623 149 23 0 chr11 26923815 26924077 -121859395 - MSTA LTR MaLR 0 428 161 24 0 0 0 chr11 26924205 26924229 -121859243 + AT_rich Low_complexity Low_complexity 1 24 0 2262 90 3 3 chr11 26925123 26925423 -121858049 - AluSc SINE Alu -9 300 1 2354 104 0 0 chr11 26925653 26925951 -121857521 + AluSg SINE Alu 1 298 -12 313 186 43 29 chr11 26926037 26926107 -121857365 - MIR SINE MIR -67 195 125 204 158 0 0 chr11 26926348 26926386 -121857086 + (TAA)n Simple_repeat Simple_repeat 1 38 0 396 40 0 0 chr11 26927969 26928019 -121855453 + (CA)n Simple_repeat Simple_repeat 1 50 0 253 351 0 13 chr11 26928035 26928112 -121855360 - L2 LINE L2 -42 3230 3155 700 250 75 0 chr11 26928673 26928873 -121854599 - MER58C DNA MER1_type 0 215 1 269 314 39 26 chr11 26929615 26929771 -121853701 - L2 LINE L2 -404 2910 2753 7912 187 36 1 chr11 26930122 26932444 -121851028 + L1MA9 LINE L1 2849 5246 -900 2376 130 32 81 chr11 26932566 26932660 -121850812 + L1MA9 LINE L1 5235 5332 -959 735 223 0 0 chr11 26932660 26932790 -121850682 + FLAM_A SINE Alu 1 130 -3 2376 130 32 81 chr11 26932790 26933082 -121850390 + L1MA9 LINE L1 5332 5606 -685 3151 27 11 0 chr11 26933082 26933458 -121850014 + L1PA2 LINE L1 5776 6155 0 2376 130 32 81 chr11 26933458 26933633 -121849839 + L1MA9 LINE L1 5606 5788 -503 419 53 40 13 chr11 26933641 26933717 -121849755 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 234 0 0 0 chr11 26933818 26933844 -121849628 + (CA)n Simple_repeat Simple_repeat 2 27 0 2744 136 48 16 chr11 26933847 26934346 -121849126 + L1MA9 LINE L1 5798 6312 0 240 86 0 0 chr11 26934405 26934440 -121849032 + (TAG)n Simple_repeat Simple_repeat 1 35 0 408 298 86 7 chr11 26934445 26934596 -121848876 - MIR SINE MIR 0 262 100 22 35 0 0 chr11 26934643 26934672 -121848800 + AT_rich Low_complexity Low_complexity 1 29 0 457 254 5 92 chr11 26934977 26935053 -121848419 - L1ME LINE L1 -450 5671 5590 2766 71 5 3 chr11 26935053 26935421 -121848051 - L1PA8 LINE L1 -15 6157 5789 457 254 5 92 chr11 26935421 26935529 -121847943 - L1ME LINE L1 -531 5590 5503 23 54 0 0 chr11 26935560 26935597 -121847875 + AT_rich Low_complexity Low_complexity 1 37 0 4083 92 2 5 chr11 26935826 26936416 -121847056 - L1PA8A LINE L1 -30 6101 5514 244 357 6 51 chr11 26936759 26936916 -121846556 - MIR3 SINE MIR -21 187 38 10330 68 10 23 chr11 26937256 26939498 -121843974 + L1PA7 LINE L1 3921 6127 -27 288 107 0 18 chr11 26939495 26939551 -121843921 + L1PA10 LINE L1 6114 6168 0 * 2618 52 0 0 chr11 26939559 26939866 -121843606 + AluY SINE Alu 5 311 0 21 82 0 0 chr11 26939987 26940036 -121843436 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr11 26940153 26940193 -121843279 + AT_rich Low_complexity Low_complexity 1 40 0 1568 209 38 3 chr11 26940275 26940567 -121842905 + AluJo SINE Alu 1 302 -10 201 74 0 0 chr11 26941715 26941742 -121841730 + (A)n Simple_repeat Simple_repeat 1 27 0 2260 133 34 43 chr11 26943271 26943444 -121840028 - L1M2 LINE L1 -588 5703 5530 1977 125 63 41 chr11 26943444 26943811 -121839661 - THE1C LTR MaLR 0 375 1 2260 133 34 43 chr11 26943811 26944275 -121839197 - L1M2 LINE L1 -761 5530 5066 2597 183 55 7 chr11 26944275 26944354 -121839118 + L1MA9 LINE L1 5692 5766 -546 285 89 0 0 chr11 26944354 26944399 -121839073 + (TG)n Simple_repeat Simple_repeat 2 46 0 2597 183 55 7 chr11 26944399 26944889 -121838583 + L1MA9 LINE L1 5766 6299 -13 12358 157 28 40 chr11 26944892 26948719 -121834753 - L1PA13 LINE L1 -14 6800 3030 1515 58 85 123 chr11 26949012 26949305 -121834167 + AluY SINE Alu 1 282 -29 2657 40 0 3 chr11 26949305 26949627 -121833845 + L1PA5 LINE L1 5826 6146 -8 2506 174 21 46 chr11 26950048 26950616 -121832856 + MER41C LTR ERV1 1 554 0 611 150 48 66 chr11 26950800 26950967 -121832505 + MER4C LTR ERV1 1 164 -301 383 249 92 0 chr11 26950960 26951158 -121832314 + MER4C LTR ERV1 149 241 -224 * 11227 189 52 11 chr11 26951275 26953989 -121829483 - L1PA13 LINE L1 -3939 2858 18 211 339 32 24 chr11 26954116 26954240 -121829232 - MIR SINE MIR -87 175 51 226 118 0 0 chr11 26954252 26954286 -121829186 + MER115 DNA AcHobo 521 554 -139 1555 266 52 78 chr11 26954719 26955340 -121828132 + MER115 DNA AcHobo 2 604 -89 673 228 79 40 chr11 26955340 26955542 -121827930 + MER63A DNA MER1_type 1 210 0 1555 266 52 78 chr11 26955542 26955627 -121827845 + MER115 DNA AcHobo 604 690 -3 2411 104 3 0 chr11 26955658 26955967 -121827505 + AluSp SINE Alu 4 313 0 291 267 311 7 chr11 26956021 26956156 -121827316 + MIR SINE MIR 78 253 -9 714 309 55 36 chr11 26957384 26957549 -121825923 - MLT1I LTR MaLR 0 409 248 2039 209 41 7 chr11 26957549 26957961 -121825511 - MSTB LTR MaLR 0 426 1 714 309 55 36 chr11 26957961 26958180 -121825292 - MLT1I LTR MaLR -161 248 18 1944 91 8 4 chr11 26958298 26958552 -121824920 + AluSg SINE Alu 49 303 -7 586 217 14 7 chr11 26960754 26960897 -121822575 + L1ME2 LINE L1 44 187 -6209 240 313 0 0 chr11 26960908 26960972 -121822500 + L1ME2 LINE L1 252 315 -6081 * 1116 246 19 0 chr11 26960968 26961281 -121822191 + L1ME2 LINE L1 4665 4983 -1232 712 133 165 0 chr11 26961291 26961449 -121822023 + MER46B DNA MER2_type 1 59 -177 544 246 38 43 chr11 26961454 26961741 -121821731 + L1ME2 LINE L1 5190 5483 -746 1687 152 35 126 chr11 26961741 26962194 -121821278 + MSTC LTR MaLR 17 428 0 1796 229 108 29 chr11 26962194 26962826 -121820646 + L1ME2 LINE L1 5472 6153 -80 475 200 30 85 chr11 26962754 26962919 -121820553 + L1MA10 LINE L1 6244 6399 -4 * 29 0 0 0 chr11 26963049 26963078 -121820394 + AT_rich Low_complexity Low_complexity 1 29 0 3474 33 2 5 chr11 26963078 26963502 -121819970 - L1PA5 LINE L1 -8 6146 5724 40897 33 23 1 chr11 26963502 26969519 -121813953 - L1PA2 LINE L1 -3 6152 6 254 32 0 0 chr11 26969527 26969558 -121813914 - L1PA5 LINE L1 -422 5732 5702 21 36 0 0 chr11 26970227 26970255 -121813217 + AT_rich Low_complexity Low_complexity 1 28 0 478 255 90 21 chr11 26971011 26971301 -121812171 - HsTC2 DNA Tc2 -6 1892 1583 399 217 0 0 chr11 26971319 26971402 -121812070 - HsTC2 DNA Tc2 -544 1354 1272 528 249 11 6 chr11 26971402 26971579 -121811893 + CT-rich Low_complexity Low_complexity 1 178 0 1325 276 97 0 chr11 26971601 26972245 -121811227 - HsTC2 DNA Tc2 -1177 721 5 549 318 32 37 chr11 26972262 26972479 -121810993 - MIR SINE MIR -40 222 7 411 320 142 45 chr11 26973296 26973543 -121809929 - L3 LINE CR1 -1 1576 1306 2031 126 11 0 chr11 26974652 26974937 -121808535 - AluSg SINE Alu -22 288 1 326 254 0 0 chr11 26975024 26975087 -121808385 - L2 LINE L2 -1 3271 3209 205 295 84 42 chr11 26975335 26975430 -121808042 + MIR SINE MIR 41 139 -123 2201 136 3 3 chr11 26975430 26975784 -121807688 - THE1C LTR MaLR -21 354 1 352 316 64 43 chr11 26975800 26976034 -121807438 - MIR SINE MIR -13 249 11 444 296 35 6 chr11 26977402 26977574 -121805898 + MLT1J2 LTR MaLR 267 443 -7 2354 188 75 48 chr11 26977576 26978285 -121805187 - Cheshire DNA MER1_type -2 2418 1691 755 197 0 0 chr11 26978285 26978427 -121805045 - MLT1A1 LTR MaLR 0 365 224 2350 78 0 3 chr11 26980448 26980743 -121802729 + AluY SINE Alu 1 294 -17 357 200 62 0 chr11 26980870 26980950 -121802522 - MIR SINE MIR -2 260 176 730 309 5 18 chr11 26981372 26981595 -121801877 - MIR SINE MIR -27 235 16 465 237 107 58 chr11 26982376 26982557 -121800915 + MIR SINE MIR 4 208 -54 225 0 0 0 chr11 26982557 26982582 -121800890 + (TA)n Simple_repeat Simple_repeat 2 26 0 465 237 107 58 chr11 26982582 26982637 -121800835 + MIR SINE MIR 208 259 -3 390 283 167 35 chr11 26982732 26982990 -121800482 - L3 LINE CR1 -42 1535 1244 * 438 261 99 0 chr11 26982989 26983131 -121800341 + MIR SINE MIR 92 247 -15 733 222 9 65 chr11 26984314 26984530 -121798942 - MER58A DNA MER1_type 0 224 21 314 320 114 41 chr11 26984685 26984904 -121798568 - MIR SINE MIR -5 257 23 250 341 55 55 chr11 26985031 26985213 -121798259 - L2 LINE L2 -143 3129 2948 399 265 31 0 chr11 26985791 26985889 -121797583 + L2 LINE L2 3207 3307 -6 362 354 42 16 chr11 26987431 26987623 -121795849 + L2 LINE L2 2887 3083 -189 223 337 0 24 chr11 26987724 26987807 -121795665 + L2 LINE L2 3192 3272 0 286 289 211 0 chr11 26987841 26987969 -121795503 + MIR3 SINE MIR 27 181 -27 356 264 58 58 chr11 26988109 26988230 -121795242 + MIR3 SINE MIR 35 155 -53 366 275 42 21 chr11 26988230 26988372 -121795100 - MER117 DNA MER1_type -2 195 51 204 196 41 41 chr11 26989226 26989323 -121794149 + (TTATA)n Simple_repeat Simple_repeat 5 101 0 815 341 70 20 chr11 26989436 26989595 -121793877 + L3 LINE CR1 975 1124 -453 1226 220 82 25 chr11 26989595 26989949 -121793523 - MLT1A2 LTR MaLR 0 374 1 815 341 70 20 chr11 26989949 26990144 -121793328 + L3 LINE CR1 1124 1347 -230 2071 131 47 33 chr11 26991570 26991929 -121791543 + THE1B LTR MaLR 1 364 0 11221 101 25 0 chr11 26991929 26993470 -121790002 + THE1B-int LTR MaLR 1 1580 0 1979 106 108 41 chr11 26993470 26993811 -121789661 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr11 26994525 26994547 -121788925 + AT_rich Low_complexity Low_complexity 1 22 0 384 327 102 19 chr11 26994640 26994845 -121788627 - MIR SINE MIR -40 222 1 191 299 65 26 chr11 26994860 26994937 -121788535 + L2 LINE L2 3184 3263 -50 197 247 12 0 chr11 26995314 26995395 -121788077 + GA-rich Low_complexity Low_complexity 3 84 0 220 98 0 59 chr11 26995671 26995722 -121787750 + (GAAAA)n Simple_repeat Simple_repeat 4 51 0 229 308 0 43 chr11 26995737 26995854 -121787618 + A-rich Low_complexity Low_complexity 4 115 0 219 315 36 48 chr11 26997333 26997498 -121785974 + L2 LINE L2 2813 2975 -338 330 322 176 5 chr11 26997537 26997742 -121785730 - MIR SINE MIR -5 257 18 244 306 118 41 chr11 26997770 26998041 -121785431 + L2 LINE L2 3022 3313 0 582 176 0 59 chr11 26998216 26998335 -121785137 - L2 LINE L2 -15 3298 3187 957 269 72 21 chr11 26998341 26998676 -121784796 - LTR16A LTR ERVL -5 445 94 192 77 0 0 chr11 26999052 26999078 -121784394 + (CATA)n Simple_repeat Simple_repeat 3 28 0 461 253 180 0 chr11 26999679 26999829 -121783643 + MIR SINE MIR 73 249 -13 2299 113 43 38 chr11 27000233 27000606 -121782866 - THE1C LTR MaLR 0 375 1 239 270 56 11 chr11 27000635 27000724 -121782748 - MER103 DNA DNA -68 98 6 689 306 79 9 chr11 27000902 27001131 -121782341 - MIR SINE MIR -8 254 10 353 313 119 21 chr11 27001397 27001650 -121781822 - L2 LINE L2 -214 3058 2782 824 163 0 0 chr11 27001727 27001862 -121781610 + FLAM_C SINE Alu 9 143 0 2103 118 12 40 chr11 27002191 27002512 -121780960 + AluSx SINE Alu 1 312 0 277 189 0 0 chr11 27004657 27004710 -121778762 - MLT2B3 LTR ERVL -2 513 461 2077 221 11 74 chr11 27004852 27005416 -121778056 - MLT2B3 LTR ERVL -31 505 4 603 279 116 17 chr11 27007517 27007750 -121775722 + MIR SINE MIR 7 262 0 461 281 132 55 chr11 27008464 27008527 -121774945 + MLT1J2 LTR MaLR 78 135 -315 1614 148 31 69 chr11 27008527 27008844 -121774628 + AluJb SINE Alu 1 305 -7 461 281 132 55 chr11 27008844 27009107 -121774365 + MLT1J2 LTR MaLR 135 429 -21 300 189 44 33 chr11 27009293 27009383 -121774089 + MER88 LTR ERVL 79 169 -295 * 1482 230 54 32 chr11 27009305 27009770 -121773702 - MER74A LTR ERVL -70 488 14 556 294 71 19 chr11 27010234 27010755 -121772717 - L1ME LINE L1 -646 5520 4977 2124 177 8 0 chr11 27010929 27011291 -121772181 + MLT1A1 LTR MaLR 1 365 0 214 255 266 0 chr11 27012575 27012669 -121770803 - L2 LINE L2 -20 3293 3175 212 217 43 0 chr11 27012804 27012850 -121770622 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 1084 30 47 0 chr11 27012851 27013020 -121770452 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 278 26 26 0 chr11 27013026 27013065 -121770407 + (TTCTC)n Simple_repeat Simple_repeat 3 42 0 245 321 24 0 chr11 27014871 27014955 -121768517 - MIR SINE MIR -15 247 162 209 378 20 20 chr11 27015018 27015116 -121768356 + L2 LINE L2 3180 3277 -36 490 300 104 22 chr11 27015881 27016111 -121767361 - L2 LINE L2 -2 3311 3063 605 299 87 22 chr11 27016118 27016584 -121766888 - MLT1H LTR MaLR 0 549 3 329 333 32 16 chr11 27016617 27016740 -121766732 + L2 LINE L2 3147 3271 -1 319 361 0 0 chr11 27016772 27016880 -121766592 - MER117 DNA MER1_type -36 161 54 1754 101 0 0 chr11 27017726 27017953 -121765519 - AluSc SINE Alu -1 308 82 537 227 0 0 chr11 27018253 27018363 -121765109 - MER20 DNA MER1_type 0 219 110 507 268 96 25 chr11 27018637 27018835 -121764637 - MIR SINE MIR -30 232 21 227 337 58 0 chr11 27019533 27019619 -121763853 - MIR SINE MIR -11 251 161 2186 152 158 44 chr11 27019669 27020196 -121763276 - LTR18B LTR ERVL -27 587 1 202 147 29 0 chr11 27020201 27020269 -121763203 + (TA)n Simple_repeat Simple_repeat 2 71 0 248 300 50 30 chr11 27020279 27020379 -121763093 - MIR SINE MIR -152 110 9 182 264 209 39 chr11 27020430 27020559 -121762913 + L3 LINE CR1 1170 1320 -257 472 337 34 0 chr11 27021829 27022007 -121761465 - MIR SINE MIR -28 234 51 235 254 0 18 chr11 27022058 27022122 -121761350 + GA-rich Low_complexity Low_complexity 5 108 0 733 370 53 23 chr11 27023187 27023728 -121759744 + L2 LINE L2 2549 3102 -211 2156 128 0 7 chr11 27023760 27024056 -121759416 - AluSx SINE Alu -18 294 1 294 306 16 16 chr11 27024620 27024744 -121758728 + MIR SINE MIR 102 225 -37 312 371 8 8 chr11 27024759 27024883 -121758589 - MIR SINE MIR -107 155 32 466 272 72 47 chr11 27024944 27025153 -121758319 + L1ME4a LINE L1 5877 6094 -27 2194 122 0 0 chr11 27025153 27025448 -121758024 - AluSg SINE Alu -15 295 1 466 272 72 47 chr11 27025448 27025473 -121757999 + L1ME4a LINE L1 6094 6117 -4 985 210 84 27 chr11 27025576 27025921 -121757551 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr11 27026270 27026299 -121757173 + AT_rich Low_complexity Low_complexity 1 29 0 419 213 0 0 chr11 27027150 27027230 -121756242 - MIR SINE MIR 0 262 183 226 245 0 0 chr11 27027478 27027527 -121755945 + L2 LINE L2 3248 3296 -17 238 200 0 0 chr11 27027936 27027981 -121755491 - MIR3 SINE MIR -8 200 156 321 335 70 11 chr11 27027984 27028169 -121755303 - MER117 DNA MER1_type 0 197 2 262 263 92 13 chr11 27028614 27028690 -121754782 + MIR3 SINE MIR 93 155 -53 200 182 0 0 chr11 27028770 27028803 -121754669 + (TG)n Simple_repeat Simple_repeat 1 33 0 341 299 10 0 chr11 27032007 27032104 -121751368 - MIR SINE MIR -108 154 57 533 274 35 62 chr11 27032228 27032382 -121751090 - L2 LINE L2 0 3313 3165 1949 143 0 39 chr11 27032382 27032689 -121750783 + AluSx SINE Alu 1 295 -17 533 274 35 62 chr11 27032689 27032760 -121750712 - L2 LINE L2 -148 3165 3094 1399 187 106 3 chr11 27034191 27034476 -121748996 + MER63B DNA MER1_type 9 335 -727 1775 158 3 11 chr11 27034476 27034804 -121748668 - AluJb SINE Alu 0 326 1 1399 187 106 3 chr11 27034804 27034848 -121748624 + MER63B DNA MER1_type 335 373 -63 1738 163 7 4 chr11 27035710 27035986 -121747486 - MLT1A1 LTR MaLR -79 286 10 1769 182 14 14 chr11 27036217 27036564 -121746908 + MER7A DNA MER2_type 2 346 0 2010 70 7 25 chr11 27037525 27037811 -121745661 - L1PA7 LINE L1 -1 6153 5873 1306 198 172 15 chr11 27037841 27038236 -121745236 - MSTB2 LTR MaLR 0 457 1 3167 142 15 0 chr11 27038598 27039078 -121744394 + L1P3 LINE L1 14 500 -5375 24900 135 8 6 chr11 27039080 27043159 -121740313 + L1P LINE L1 1605 5690 -771 327 25 0 0 chr11 27044299 27044339 -121739133 + (CA)n Simple_repeat Simple_repeat 2 41 0 599 280 28 0 chr11 27045287 27045469 -121738003 - MIR SINE MIR 0 262 76 268 289 89 0 chr11 27045503 27045593 -121737879 + L2 LINE L2 3149 3246 -26 197 376 68 8 chr11 27045891 27046008 -121737464 + L2 LINE L2 2941 3064 -208 233 350 38 0 chr11 27046864 27046944 -121736528 - MIR SINE MIR -62 146 64 400 217 174 43 chr11 27047020 27047158 -121736314 + MER5B DNA MER1_type 23 178 0 1270 205 69 23 chr11 27047965 27048268 -121735204 + L1MA2 LINE L1 16 332 -7233 * 12531 159 28 19 chr11 27048251 27051586 -121731886 + L1MA2 LINE L1 1500 4869 -2696 1031 148 7 7 chr11 27051593 27051748 -121731724 + AluSx SINE Alu 1 155 -157 6975 126 9 28 chr11 27051748 27053494 -121729978 + L1MA2 LINE L1 6009 7723 0 351 285 33 74 chr11 27053738 27053980 -121729492 - HAL1 LINE L1 -1 2506 2275 302 309 59 15 chr11 27053986 27054122 -121729350 - HAL1 LINE L1 -208 2299 2158 974 139 97 28 chr11 27054126 27054342 -121729130 + MER44D DNA MER2_type 1 501 -108 410 278 139 120 chr11 27054488 27054704 -121728768 + MLT1F LTR MaLR 1 228 -314 2283 112 0 0 chr11 27054704 27055017 -121728455 - AluSq SINE Alu 0 313 1 410 278 139 120 chr11 27055017 27055174 -121728298 + MLT1F LTR MaLR 228 381 -161 1835 183 62 5 chr11 27055260 27055632 -121727840 - MSTD LTR MaLR -3 393 1 1141 254 49 14 chr11 27055644 27056014 -121727458 - HAL1 LINE L1 -742 1765 1383 1105 312 77 2 chr11 27056133 27056537 -121726935 + LTR16A LTR ERVL 17 450 0 506 262 34 56 chr11 27056583 27056904 -121726568 - HAL1 LINE L1 -1148 1359 1046 429 231 0 19 chr11 27057096 27057252 -121726220 + CT-rich Low_complexity Low_complexity 4 156 0 507 314 93 52 chr11 27058230 27058638 -121724834 - MLT1J2 LTR MaLR -2 448 24 255 303 184 7 chr11 27058703 27058855 -121724617 - MIR3 SINE MIR 0 208 30 339 265 17 26 chr11 27058930 27059047 -121724425 + MER103 DNA DNA 3 118 -48 487 350 47 20 chr11 27059589 27059889 -121723583 - L3 LINE CR1 -649 928 621 383 327 65 7 chr11 27060203 27060356 -121723116 - MIR SINE MIR -73 189 28 499 298 29 29 chr11 27060533 27060704 -121722768 - MER5A DNA MER1_type 0 189 19 1390 165 4 35 chr11 27061189 27061449 -121722023 - MLT1B LTR MaLR 0 390 139 22 35 0 0 chr11 27062609 27062638 -121720834 + AT_rich Low_complexity Low_complexity 1 29 0 883 172 24 53 chr11 27062804 27063013 -121720459 - MLT2D LTR ERVL -211 203 1 1787 175 16 0 chr11 27063016 27063331 -121720141 - L1MC1 LINE L1 -418 5915 5596 334 197 4 2 chr11 27063331 27063407 -121720065 + MLT1D LTR MaLR 298 505 0 277 315 27 18 chr11 27063819 27063930 -121719542 + MIR SINE MIR 56 167 -95 2217 128 0 3 chr11 27064356 27064669 -121718803 - AluSq SINE Alu 0 313 2 233 348 57 88 chr11 27064684 27065104 -121718368 + L2 LINE L2 2866 3272 0 390 256 156 69 chr11 27065953 27066113 -121717359 - MER5A DNA MER1_type -12 177 4 399 279 137 11 chr11 27066534 27066717 -121716755 - MIR SINE MIR -54 208 3 230 364 101 32 chr11 27067262 27067509 -121715963 - L3 LINE CR1 -164 1413 1150 537 322 62 6 chr11 27067528 27067705 -121715767 + MIR SINE MIR 26 212 -50 269 332 186 22 chr11 27067695 27068017 -121715455 - L3 LINE CR1 -476 1101 727 * 180 0 0 0 chr11 27068095 27068115 -121715357 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3318 50 5 25 chr11 27068117 27068557 -121714915 - L1PA7 LINE L1 -18 6136 5706 1970 194 2 25 chr11 27069309 27069706 -121713766 - MLT1B LTR MaLR 0 390 3 2398 161 26 0 chr11 27069861 27070278 -121713194 - MSTC LTR MaLR 0 428 1 29 0 0 0 chr11 27070728 27070757 -121712715 + AT_rich Low_complexity Low_complexity 1 29 0 293 320 0 33 chr11 27070804 27070954 -121712518 + GA-rich Low_complexity Low_complexity 1 145 0 1871 138 3 64 chr11 27071445 27071772 -121711700 + AluSc SINE Alu 1 307 -2 378 0 0 0 chr11 27072836 27072878 -121710594 + (TG)n Simple_repeat Simple_repeat 1 42 0 339 25 0 0 chr11 27072877 27072917 -121710555 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 312 333 128 7 chr11 27074073 27074214 -121709258 - MIR3 SINE MIR -21 187 30 504 81 0 0 chr11 27074314 27074388 -121709084 + (TA)n Simple_repeat Simple_repeat 2 75 0 551 269 54 50 chr11 27074809 27075069 -121708403 + L2 LINE L2 2949 3209 -104 2615 127 56 2 chr11 27075736 27076162 -121707310 + L1PA15 LINE L1 5717 6165 0 29 28 0 0 chr11 27076172 27076208 -121707264 + AT_rich Low_complexity Low_complexity 1 36 0 395 192 0 0 chr11 27076817 27076890 -121706582 + AluJ/FLAM SINE Alu 11 83 -219 383 374 11 22 chr11 27077542 27077724 -121705748 + MIR3 SINE MIR 15 194 -14 203 121 0 0 chr11 27079505 27079539 -121703933 - MER5A DNA MER1_type -152 37 4 343 352 59 0 chr11 27080242 27080396 -121703076 + HAL1 LINE L1 1384 1545 -962 276 240 0 0 chr11 27081561 27081611 -121701861 + MIR SINE MIR 78 127 -81 306 292 44 9 chr11 27081649 27081762 -121701710 - MIR SINE MIR 0 262 146 26 30 0 0 chr11 27082139 27082172 -121701300 + AT_rich Low_complexity Low_complexity 1 33 0 462 125 45 23 chr11 27082282 27082370 -121701102 - L1MC2 LINE L1 -2 6342 6253 1343 167 0 0 chr11 27082390 27082606 -121700866 - MSTA LTR MaLR -2 426 211 1143 143 0 0 chr11 27082623 27082784 -121700688 - AluJb SINE Alu -16 296 136 826 175 140 0 chr11 27082784 27082955 -121700517 - MSTA LTR MaLR -231 197 3 788 154 47 7 chr11 27082955 27083104 -121700368 - MSTA-int LTR MaLR -1 1650 1496 * 3438 167 20 5 chr11 27083095 27083730 -121699742 - MSTA-int LTR MaLR -1006 645 1 2123 170 80 10 chr11 27083730 27084130 -121699342 - MSTA LTR MaLR 0 428 1 988 138 87 41 chr11 27084135 27084353 -121699119 - L1MC1 LINE L1 -104 6229 6002 281 83 0 0 chr11 27084385 27084421 -121699051 + THE1B LTR MaLR 5 40 -324 28 48 0 0 chr11 27084680 27084722 -121698750 + AT_rich Low_complexity Low_complexity 1 42 0 416 339 48 26 chr11 27084728 27084958 -121698514 - MIR SINE MIR -3 259 25 410 295 94 19 chr11 27085717 27085925 -121697547 - MIR SINE MIR -24 238 19 289 315 32 10 chr11 27086831 27086957 -121696515 - MIR SINE MIR -86 122 26 180 270 16 16 chr11 27087293 27087356 -121696116 + L2 LINE L2 3250 3312 -1 211 147 0 0 chr11 27087585 27087619 -121695853 - MIR SINE MIR -10 252 219 181 342 63 13 chr11 27089381 27089460 -121694012 + L2 LINE L2 3001 3083 -189 1003 264 70 52 chr11 27089515 27089860 -121693612 - MER69 DNA AcHobo -2041 485 135 243 336 55 18 chr11 27090681 27090791 -121692681 + L2 LINE L2 3139 3252 -20 1059 174 162 43 chr11 27090871 27091151 -121692321 - AluJo SINE Alu 0 310 1 638 242 50 45 chr11 27092078 27092363 -121691109 + MLT1G1 LTR MaLR 10 267 -288 249 281 171 14 chr11 27092412 27092558 -121690914 + MLT1G1 LTR MaLR 407 575 -15 1699 267 55 9 chr11 27092572 27093152 -121690320 + L1ME3 LINE L1 5261 5867 -295 3401 128 66 2 chr11 27094331 27094935 -121688537 + L1PB2 LINE L1 1842 2484 -4379 4969 220 19 49 chr11 27095036 27095791 -121687681 + L1PB2 LINE L1 3996 4772 -2090 2202 130 3 0 chr11 27095791 27096098 -121687374 + AluSp SINE Alu 1 308 -5 4969 220 19 49 chr11 27096098 27096506 -121686966 + L1PB2 LINE L1 4772 5191 -1671 189 0 0 0 chr11 27096506 27096527 -121686945 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4969 220 19 49 chr11 27096527 27096606 -121686866 + L1PB2 LINE L1 5191 5271 -1591 2000 107 41 4 chr11 27096606 27096981 -121686491 + AluSc SINE Alu 1 385 0 4969 220 19 49 chr11 27096981 27097133 -121686339 + L1PB2 LINE L1 5271 5351 -1511 519 84 21 42 chr11 27097236 27097331 -121686141 + L1PBa LINE L1 2519 2611 -4252 337 100 0 50 chr11 27097329 27097389 -121686083 + L1PBa LINE L1 2814 2870 -3993 * 1368 156 0 0 chr11 27097404 27097616 -121685856 - AluSq SINE Alu 0 313 102 2818 161 11 28 chr11 27097619 27098192 -121685280 + L1 LINE L1 2877 3439 -3423 186 71 0 0 chr11 27098413 27098441 -121685031 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2209 88 4 0 chr11 27098466 27098740 -121684732 - AluY SINE Alu -36 275 1 25 0 0 0 chr11 27098880 27098905 -121684567 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 27099543 27099571 -121683901 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr11 27099716 27099749 -121683723 + AT_rich Low_complexity Low_complexity 1 33 0 1043 255 14 3 chr11 27099897 27100187 -121683285 + L1 LINE L1 2750 3042 -3104 5596 142 19 7 chr11 27100291 27100903 -121682569 + L1PB2 LINE L1 5578 6181 -686 1483 200 39 0 chr11 27100903 27101188 -121682284 + AluJb SINE Alu 1 296 -16 5596 142 19 7 chr11 27101188 27101847 -121681625 + L1PB2 LINE L1 6181 6860 -7 2088 139 3 0 chr11 27101860 27102163 -121681309 + AluSq SINE Alu 1 304 -9 880 237 31 0 chr11 27102166 27102394 -121681078 + L1PA15-16 LINE L1 2841 3075 -4490 3539 269 19 16 chr11 27102400 27103653 -121679819 + L1PA16 LINE L1 2636 4215 -3350 1921 189 56 12 chr11 27103653 27104061 -121679411 - MSTB LTR MaLR 0 426 1 7548 205 43 12 chr11 27104061 27105662 -121677810 - MSTB-int LTR MaLR 0 1651 1 2164 179 37 22 chr11 27105674 27106081 -121677391 - MSTB LTR MaLR -13 413 1 2924 239 28 21 chr11 27106087 27107007 -121676465 + L1 LINE L1 4217 5143 -2422 2413 195 35 6 chr11 27107036 27107523 -121675949 + THE1B-int LTR MaLR 285 785 -795 749 147 0 0 chr11 27107525 27107641 -121675831 + THE1B-int LTR MaLR 1021 1136 -444 1447 118 5 0 chr11 27107746 27107949 -121675523 + THE1B-int LTR MaLR 1157 1360 -220 38416 75 7 12 chr11 27107949 27109694 -121673778 + L1PA3 LINE L1 1 1753 -4402 2480 18 0 0 chr11 27109694 27109968 -121673504 + AluYa5 SINE Alu 35 308 -3 38416 75 7 12 chr11 27109968 27114407 -121669065 + L1PA3 LINE L1 1753 6155 0 7022 57 8 1 chr11 27114416 27115547 -121667925 + L1PA6 LINE L1 5016 6153 -1 1595 103 4 0 chr11 27115573 27115807 -121667665 + THE1B-int LTR MaLR 1346 1580 0 2509 129 3 3 chr11 27115807 27116171 -121667301 + THE1B LTR MaLR 1 364 0 5242 209 38 2 chr11 27116171 27118092 -121665380 + L1PA16 LINE L1 5621 7583 -2 207 264 16 24 chr11 27119192 27119269 -121664203 + CT-rich Low_complexity Low_complexity 2 124 0 295 318 48 16 chr11 27119879 27120005 -121663467 + MIR3 SINE MIR 38 167 -41 21 71 0 0 chr11 27121968 27122010 -121661462 + AT_rich Low_complexity Low_complexity 1 42 0 1028 259 15 36 chr11 27122014 27122381 -121661091 - L1MD3 LINE L1 0 8041 7691 209 224 0 17 chr11 27122721 27122779 -121660693 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2512 67 0 0 chr11 27123361 27123659 -121659813 + AluY SINE Alu 1 298 -13 308 265 29 59 chr11 27123855 27123957 -121659515 - MIR SINE MIR -78 184 86 287 328 102 53 chr11 27124083 27124425 -121659047 + L2 LINE L2 2446 2804 -510 22 35 0 0 chr11 27124431 27124460 -121659012 + AT_rich Low_complexity Low_complexity 1 29 0 257 324 47 115 chr11 27124586 27124864 -121658608 + L2 LINE L2 3000 3258 -14 2329 51 20 3 chr11 27126048 27126176 -121657296 + AluY SINE Alu 1 125 -186 216 0 0 0 chr11 27126176 27126200 -121657272 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2329 51 20 3 chr11 27126200 27126367 -121657105 + AluY SINE Alu 125 301 -10 398 284 68 20 chr11 27127485 27127633 -121655839 - MIR SINE MIR -56 206 52 236 222 0 0 chr11 27127781 27127826 -121655646 - L2 LINE L2 -5 3308 3264 263 274 0 0 chr11 27128204 27128266 -121655206 - L2 LINE L2 -1 3312 3251 508 278 58 54 chr11 27128960 27129183 -121654289 + MIR SINE MIR 38 261 -1 272 301 85 45 chr11 27129420 27129619 -121653853 - MLT1J2 LTR MaLR -122 328 122 624 200 50 22 chr11 27130043 27130223 -121653249 + MER53 DNA DNA 3 187 -2 296 289 154 0 chr11 27130795 27130899 -121652573 - MIR SINE MIR -136 126 7 529 285 40 13 chr11 27130985 27131136 -121652336 + MIR SINE MIR 36 190 -72 729 275 120 63 chr11 27132452 27133013 -121650459 + MLT1H1 LTR MaLR 1 544 -11 346 288 187 23 chr11 27134313 27134532 -121648940 + MIR SINE MIR 7 261 -1 1150 168 46 50 chr11 27134767 27135029 -121648443 - L1MA7 LINE L1 -145 6146 5886 851 129 34 0 chr11 27135032 27135179 -121648293 + L1MA7 LINE L1 6137 6288 -3 251 327 0 0 chr11 27135246 27135301 -121648171 + L2 LINE L2 3147 3201 -71 858 289 98 15 chr11 27135392 27135869 -121647603 - LTR33 LTR ERVL -4 517 1 202 323 32 86 chr11 27136059 27136152 -121647320 - L2 LINE L2 -93 3179 3092 591 268 61 22 chr11 27136359 27136587 -121646885 + MLT1E LTR MaLR 15 251 -342 493 186 0 0 chr11 27136588 27136674 -121646798 - MLT1A1 LTR MaLR 0 365 280 759 157 143 0 chr11 27136675 27136815 -121646657 - AluJb SINE Alu -152 160 1 1599 261 101 48 chr11 27136826 27137530 -121645942 - L1MCc LINE L1 -4251 2871 2206 213 94 0 0 chr11 27137530 27137562 -121645910 + (TG)n Simple_repeat Simple_repeat 2 33 0 1599 261 101 48 chr11 27137562 27137739 -121645733 - L1MCc LINE L1 -4916 2206 2040 207 0 0 0 chr11 27137739 27137762 -121645710 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1599 261 101 48 chr11 27137762 27138411 -121645061 - L1MCc LINE L1 -5082 2040 1090 294 255 245 0 chr11 27138626 27138724 -121644748 + MER5A DNA MER1_type 61 182 -7 333 0 0 0 chr11 27138967 27139004 -121644468 + (TG)n Simple_repeat Simple_repeat 2 38 0 317 264 64 18 chr11 27139949 27140059 -121643413 + MIR SINE MIR 110 224 -38 790 276 166 33 chr11 27140650 27140872 -121642600 - MLT1D LTR MaLR -54 451 260 2000 117 0 4 chr11 27140872 27141153 -121642319 - AluSx SINE Alu 0 312 33 790 276 166 33 chr11 27141153 27141328 -121642144 - MLT1D LTR MaLR -245 260 1 348 335 108 12 chr11 27143785 27143952 -121639520 - MIR SINE MIR -70 192 10 185 311 185 15 chr11 27144563 27144698 -121638774 - MIR SINE MIR -12 250 93 256 380 9 26 chr11 27146686 27146773 -121636699 + MIR SINE MIR 34 121 -87 2275 99 0 0 chr11 27146773 27147105 -121636367 - AluSx SINE Alu 0 334 3 256 380 9 26 chr11 27147105 27147129 -121636343 + MIR SINE MIR 121 144 -64 2034 234 59 42 chr11 27147379 27148145 -121635327 + L1ME2 LINE L1 4530 5308 -838 635 276 18 26 chr11 27148157 27148385 -121635087 + L1ME2 LINE L1 5919 6144 -20 193 56 28 28 chr11 27148711 27148747 -121634725 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 1929 169 137 11 chr11 27148749 27149121 -121634351 + MSTA LTR MaLR 10 428 0 8713 186 19 7 chr11 27149121 27150753 -121632719 + MSTA-int LTR MaLR 1 1651 0 2137 144 128 10 chr11 27150753 27151136 -121632336 + MSTA LTR MaLR 1 428 0 486 291 8 0 chr11 27151384 27151511 -121631961 - MLT1I LTR MaLR -253 156 29 25 31 0 0 chr11 27151798 27151830 -121631642 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr11 27151885 27151924 -121631548 + AT_rich Low_complexity Low_complexity 1 39 0 1961 121 3 42 chr11 27151929 27152236 -121631236 + AluSc SINE Alu 1 295 -14 241 242 137 11 chr11 27152248 27152343 -121631129 - L1M4 LINE L1 -1035 5111 5005 5419 144 28 29 chr11 27152357 27153128 -121630344 + HSMAR2 DNA Mariner 339 1111 -191 2198 116 0 0 chr11 27153128 27153445 -121630027 + AluSx SINE Alu 1 317 0 5419 144 28 29 chr11 27153445 27153636 -121629836 + HSMAR2 DNA Mariner 1111 1301 -1 763 128 9 0 chr11 27153796 27153905 -121629567 - LTR40b LTR ERVL 0 462 353 14649 202 18 10 chr11 27153998 27160468 -121623004 + L1PB1 LINE L1 6 6866 -1 1104 291 56 16 chr11 27160488 27160808 -121622664 - LTR40a LTR ERVL -121 398 66 317 333 0 11 chr11 27161305 27161392 -121622080 + MIR3 SINE MIR 15 100 -108 2089 188 83 11 chr11 27162419 27162855 -121620617 + MLT1C LTR MaLR 1 467 0 708 267 19 24 chr11 27162922 27163132 -121620340 + MER3 DNA MER1_type 1 209 0 275 343 0 0 chr11 27164439 27164541 -121618931 - L2 LINE L2 -1367 1947 1846 254 394 65 7 chr11 27164605 27164760 -121618712 + L2 LINE L2 2596 2759 -555 329 232 33 55 chr11 27164767 27164948 -121618524 + L1MC5 LINE L1 7488 7664 -297 2867 206 58 83 chr11 27165525 27166429 -121617043 + L1MD2 LINE L1 5464 6344 -15 30 27 0 0 chr11 27166586 27166623 -121616849 + AT_rich Low_complexity Low_complexity 1 37 0 846 313 61 67 chr11 27166834 27167810 -121615662 - L2 LINE L2 -140 3173 2220 1709 110 11 0 chr11 27168046 27168310 -121615162 + L1 LINE L1 4556 4822 -1324 501 17 0 0 chr11 27168497 27168555 -121614917 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 248 292 97 42 chr11 27169924 27170068 -121613404 + MIR SINE MIR 111 262 0 227 342 59 20 chr11 27170444 27170646 -121612826 - L2 LINE L2 -877 2437 2228 701 281 77 16 chr11 27170850 27171096 -121612376 + MIR SINE MIR 2 262 0 187 378 75 51 chr11 27171168 27171462 -121612010 + L2 LINE L2 2940 3240 -32 21 36 0 0 chr11 27171532 27171560 -121611912 + AT_rich Low_complexity Low_complexity 1 28 0 184 306 20 0 chr11 27171567 27171616 -121611856 - MIR SINE MIR -19 243 194 614 152 9 0 chr11 27172307 27172419 -121611053 + FLAM_C SINE Alu 31 143 0 374 285 6 58 chr11 27172696 27172868 -121610604 + L1ME LINE L1 5559 5721 -400 460 88 18 35 chr11 27173146 27173259 -121610213 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 210 143 0 0 chr11 27173365 27173400 -121610072 + (TA)n Simple_repeat Simple_repeat 1 35 0 221 203 0 78 chr11 27174436 27174500 -121608972 - MIR SINE MIR -108 154 96 799 261 96 56 chr11 27175760 27175836 -121607636 + MLT1E LTR MaLR 80 152 -441 405 0 0 0 chr11 27175836 27175881 -121607591 + (TG)n Simple_repeat Simple_repeat 2 46 0 799 261 96 56 chr11 27175881 27176107 -121607365 + MLT1E LTR MaLR 152 394 -199 570 206 59 0 chr11 27176080 27176216 -121607256 + MLT1E LTR MaLR 511 654 0 * 22 35 0 0 chr11 27178737 27178766 -121604706 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr11 27178876 27178906 -121604566 + AT_rich Low_complexity Low_complexity 1 30 0 1564 285 107 93 chr11 27179809 27181650 -121601822 + L2 LINE L2 1442 3313 0 214 232 43 29 chr11 27181700 27181769 -121601703 - MIR SINE MIR -64 144 84 1351 315 72 65 chr11 27182532 27184165 -121599307 + L1ME LINE L1 3383 5025 -1121 602 84 0 0 chr11 27184166 27184249 -121599223 + AluSg/x SINE Alu 219 301 -9 230 319 76 17 chr11 27184570 27184689 -121598783 + L1ME LINE L1 5458 5583 -538 238 325 32 26 chr11 27184729 27184883 -121598589 + L1ME LINE L1 5628 5782 -380 1218 234 75 3 chr11 27184974 27185256 -121598216 + AluJo SINE Alu 1 302 0 603 158 15 8 chr11 27185288 27185421 -121598051 + GA-rich Low_complexity Low_complexity 3 136 0 1727 146 76 25 chr11 27185483 27185840 -121597632 - THE1C LTR MaLR 0 375 1 9608 118 8 88 chr11 27185841 27186158 -121597314 - THE1C-int LTR MaLR -1 1579 1238 2163 103 19 26 chr11 27186158 27186468 -121597004 - AluSg SINE Alu -2 308 1 9608 118 8 88 chr11 27186468 27187867 -121595605 - THE1C-int LTR MaLR -342 1238 1 1911 122 68 54 chr11 27187867 27188237 -121595235 - THE1C LTR MaLR 0 375 1 868 138 36 0 chr11 27188786 27188953 -121594519 + L1MA8 LINE L1 6119 6291 0 258 318 91 13 chr11 27189404 27189558 -121593914 + MIR SINE MIR 53 218 -44 1734 146 0 63 chr11 27190832 27191157 -121592315 + AluSx SINE Alu 1 306 0 288 158 0 0 chr11 27191812 27191869 -121591603 + GA-rich Low_complexity Low_complexity 1 57 0 188 65 0 32 chr11 27192016 27192047 -121591425 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 484 305 62 49 chr11 27193819 27194127 -121589345 + L2 LINE L2 2923 3234 -79 1179 151 110 33 chr11 27194151 27194488 -121588984 - Charlie1a DNA MER1_type -4 1451 1089 3428 214 76 27 chr11 27194514 27194780 -121588692 - Charlie1a DNA MER1_type -1756 1005 754 2139 134 0 0 chr11 27194780 27195078 -121588394 - AluSx SINE Alu -14 298 1 3428 214 76 27 chr11 27195078 27195312 -121588160 - Charlie1a DNA MER1_type -2007 754 533 2060 144 0 3 chr11 27195312 27195610 -121587862 + AluSx SINE Alu 2 298 -14 3428 214 76 27 chr11 27195610 27196065 -121587407 - Charlie1a DNA MER1_type -2228 533 2 389 240 85 85 chr11 27196070 27196270 -121587202 + MIR SINE MIR 13 212 -50 2099 154 46 29 chr11 27196847 27197389 -121586083 + MLT2A2 LTR ERVL 3 554 0 424 347 119 25 chr11 27197401 27197721 -121585751 - MLT1K LTR MaLR -229 359 10 281 286 165 8 chr11 27198187 27198320 -121585152 + MIR SINE MIR 74 227 -35 319 376 34 98 chr11 27198626 27199347 -121584125 - L2 LINE L2 0 3272 2601 216 111 0 0 chr11 27199374 27199410 -121584062 + (ATG)n Simple_repeat Simple_repeat 3 38 0 847 219 5 33 chr11 27199503 27199718 -121583754 - MER3 DNA MER1_type 0 209 1 1739 103 0 21 chr11 27200189 27200432 -121583040 + AluSg SINE Alu 55 292 -18 1733 249 27 17 chr11 27201123 27201224 -121582248 + MLT1F LTR MaLR 3 102 -440 3347 137 40 5 chr11 27201224 27201799 -121581673 - LTR49 LTR ERV1 0 595 1 1733 249 27 17 chr11 27201799 27202110 -121581362 + MLT1F LTR MaLR 102 419 -123 * 2964 92 5 1 chr11 27202104 27202710 -121580762 + PABL_A LTR ERV1 8 660 0 457 186 50 118 chr11 27202710 27202840 -121580632 + MLT1F LTR MaLR 424 542 0 2358 77 0 3 chr11 27202864 27203163 -121580309 - AluY SINE Alu -13 298 1 3748 150 13 2 chr11 27203216 27203844 -121579628 - MER41B LTR ERV1 0 635 1 7096 102 28 10 chr11 27203844 27204883 -121578589 - MER41B-int LTR ERV1 0 5946 4889 3332 158 79 44 chr11 27204881 27205613 -121577859 - HUERS-P1 LTR ERV1 -3245 3018 2261 * 498 128 39 0 chr11 27205638 27205716 -121577756 - HUERS-P1 LTR ERV1 -4239 2024 1944 * 2921 148 80 22 chr11 27205695 27206234 -121577238 - HUERS-P1 LTR ERV1 -4171 1775 1206 * 4204 160 47 4 chr11 27206220 27206950 -121576522 - HUERS-P1 LTR ERV1 -5017 929 169 26 30 0 0 chr11 27207287 27207320 -121576152 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr11 27207410 27207436 -121576036 + AT_rich Low_complexity Low_complexity 1 26 0 1296 148 148 71 chr11 27207529 27207868 -121575604 + LTR49 LTR ERV1 201 565 -30 183 154 46 0 chr11 27208101 27208166 -121575306 + (TA)n Simple_repeat Simple_repeat 1 68 0 765 310 106 24 chr11 27208733 27209149 -121574323 + MLT1J2 LTR MaLR 1 450 0 523 246 18 83 chr11 27209591 27209819 -121573653 + MER58C DNA MER1_type 2 214 -1 646 310 98 18 chr11 27210231 27210557 -121572915 + L3 LINE CR1 1153 1504 -73 31 0 0 0 chr11 27211087 27211118 -121572354 + AT_rich Low_complexity Low_complexity 1 31 0 198 159 45 0 chr11 27211454 27211498 -121571974 + MIR SINE MIR 83 128 -80 337 379 85 20 chr11 27212484 27212790 -121570682 + L2 LINE L2 2629 2954 -360 3231 140 22 4 chr11 27213664 27214213 -121569259 + L1MA8 LINE L1 5730 6288 -3 21 36 0 0 chr11 27214961 27214989 -121568483 + AT_rich Low_complexity Low_complexity 1 28 0 324 322 168 7 chr11 27215825 27216111 -121567361 + L1ME4a LINE L1 5752 6083 -38 2442 66 10 0 chr11 27266619 27266923 -121516549 - AluSp SINE Alu -6 307 1 674 285 52 0 chr11 27267442 27267635 -121515837 + MIR SINE MIR 7 209 -53 1815 169 10 0 chr11 27267712 27268013 -121515459 - AluJo SINE Alu -8 304 1 387 328 99 15 chr11 27268122 27268323 -121515149 - MIR SINE MIR -6 256 39 2094 111 0 0 chr11 27268820 27269131 -121514341 + AluSx SINE Alu 12 312 0 1212 138 10 10 chr11 27269727 27269922 -121513550 + MER46A DNA MER2_type 27 221 -15 499 294 53 12 chr11 27270240 27270410 -121513062 + MER5B DNA MER1_type 1 177 -1 232 146 56 0 chr11 27271751 27271840 -121511632 + (TA)n Simple_repeat Simple_repeat 1 94 0 1708 106 0 4 chr11 27271842 27272069 -121511403 - AluSg/x SINE Alu -17 295 70 2091 117 0 39 chr11 27272163 27272471 -121511001 - AluSx SINE Alu -14 298 3 337 301 60 8 chr11 27272510 27272643 -121510829 - L1M4 LINE L1 -3630 2516 2377 23 33 0 0 chr11 27272963 27272993 -121510479 + AT_rich Low_complexity Low_complexity 1 30 0 311 344 116 14 chr11 27273028 27273374 -121510098 + L1 LINE L1 3094 3474 -2672 2246 105 3 0 chr11 27274440 27274736 -121508736 + AluSp SINE Alu 1 297 -16 207 0 0 0 chr11 27274950 27274973 -121508499 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 183 138 0 0 chr11 27275375 27275404 -121508068 + L3 LINE CR1 1454 1482 -95 402 300 93 0 chr11 27275580 27275720 -121507752 + MLT1H1 LTR MaLR 403 555 0 369 0 0 0 chr11 27276514 27276555 -121506917 + (CA)n Simple_repeat Simple_repeat 1 41 0 244 280 65 11 chr11 27276915 27277008 -121506464 - MIR SINE MIR -53 209 112 247 189 14 14 chr11 27277012 27277086 -121506386 + GA-rich Low_complexity Low_complexity 5 78 0 278 336 8 52 chr11 27277255 27277389 -121506083 - MIR SINE MIR -133 129 2 454 289 102 16 chr11 27277396 27277711 -121505761 + HAL1 LINE L1 995 1336 -1171 497 288 78 79 chr11 27277721 27278116 -121505356 + LTR16B LTR ERVL 12 441 -9 2012 246 91 76 chr11 27278127 27279145 -121504327 + HAL1 LINE L1 1334 2372 -135 2266 82 0 13 chr11 27279145 27279448 -121504024 + AluY SINE Alu 1 299 -12 2012 246 91 76 chr11 27279448 27279585 -121503887 + HAL1 LINE L1 2372 2506 -1 212 244 23 47 chr11 27280063 27280149 -121503323 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 259 299 155 10 chr11 27280172 27280269 -121503203 - MIR SINE MIR -103 159 49 2473 59 7 0 chr11 27280284 27280591 -121502881 + AluY SINE Alu 1 309 -2 28 0 0 0 chr11 27280591 27280619 -121502853 + AT_rich Low_complexity Low_complexity 1 28 0 202 297 0 68 chr11 27281414 27281488 -121501984 - L2 LINE L2 0 3313 3245 484 268 109 33 chr11 27281525 27281708 -121501764 - MIR SINE MIR -32 230 34 1320 202 48 38 chr11 27281751 27282043 -121501429 - AluJb SINE Alu -17 295 1 781 319 41 57 chr11 27282580 27283146 -121500326 - L2 LINE L2 0 3313 2758 29 73 0 12 chr11 27283827 27283860 -121499612 + AT_rich Low_complexity Low_complexity 1 33 -48 209 95 0 24 chr11 27283860 27283902 -121499570 + (TTTAA)n Simple_repeat Simple_repeat 5 45 0 29 73 0 12 chr11 27283902 27283950 -121499522 + AT_rich Low_complexity Low_complexity 33 81 0 21 36 0 0 chr11 27284152 27284180 -121499292 + AT_rich Low_complexity Low_complexity 1 28 0 1995 138 30 3 chr11 27284603 27284907 -121498565 + AluSx SINE Alu 1 312 0 24 32 0 0 chr11 27285234 27285265 -121498207 + AT_rich Low_complexity Low_complexity 1 31 0 357 389 39 56 chr11 27285480 27286099 -121497373 - L2 LINE L2 -221 3051 2442 2348 105 0 0 chr11 27287298 27287604 -121495868 + AluSg SINE Alu 1 306 -4 409 134 0 0 chr11 27288001 27288068 -121495404 + MADE1 DNA Mariner 13 79 -1 278 306 134 25 chr11 27288762 27288919 -121494553 - MIR SINE MIR -69 193 20 189 0 0 0 chr11 27288953 27288974 -121494498 + (TA)n Simple_repeat Simple_repeat 2 22 0 1155 325 63 25 chr11 27289381 27290012 -121493460 + L1MA6 LINE L1 399 1433 -6133 4972 238 38 13 chr11 27290539 27293610 -121489862 + L1MA6 LINE L1 2097 4949 -2616 2482 156 46 42 chr11 27293608 27294158 -121489314 + L1MA6 LINE L1 6341 6905 -814 * 2285 91 3 0 chr11 27294158 27294455 -121489017 + AluSp SINE Alu 1 298 -15 2482 156 46 42 chr11 27294455 27294754 -121488718 + L1MA6 LINE L1 6905 7201 -518 444 120 0 43 chr11 27294754 27294846 -121488626 + L1P3 LINE L1 1 88 -5787 19204 146 35 51 chr11 27295046 27300220 -121483252 + L1P3 LINE L1 72 5228 -1233 1333 185 45 6 chr11 27300241 27300554 -121482918 + L1MA6 LINE L1 7394 7718 -1 421 318 76 38 chr11 27300756 27300967 -121482505 - L1ME4a LINE L1 -269 5852 5634 26 30 0 0 chr11 27301285 27301318 -121482154 + AT_rich Low_complexity Low_complexity 1 33 0 480 147 1 69 chr11 27301492 27301603 -121481869 + L1MA6 LINE L1 5972 6087 -213 1404 180 25 101 chr11 27301608 27301924 -121481548 - AluJo SINE Alu -20 292 1 295 296 24 64 chr11 27302659 27302784 -121480688 - MER91B DNA MER1_type -60 130 11 278 296 80 11 chr11 27303233 27303321 -121480151 + MIR SINE MIR 95 188 -74 579 219 10 20 chr11 27303697 27303967 -121479505 + GA-rich Low_complexity Low_complexity 1 267 0 1035 111 11 11 chr11 27303969 27304149 -121479323 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 40 21 0 0 chr11 27306094 27306141 -121477331 + AT_rich Low_complexity Low_complexity 1 47 0 3648 93 4 4 chr11 27306703 27307228 -121476244 + LTR17 LTR ERV1 256 780 0 4755 72 10 22 chr11 27307250 27307921 -121475551 + HERV17 LTR ERV1 22 684 -7942 5813 76 12 39 chr11 27308088 27308983 -121474489 + HERV17 LTR ERV1 732 1602 -7024 487 258 16 11 chr11 27309098 27309280 -121474192 + HERV17 LTR ERV1 1180 1362 -7264 252 0 0 0 chr11 27309446 27309474 -121473998 + (A)n Simple_repeat Simple_repeat 1 28 0 17013 60 3 0 chr11 27309479 27311685 -121471787 + HERV17 LTR ERV1 1543 3754 -4872 13580 60 0 1 chr11 27311664 27313409 -121470063 + HERV17 LTR ERV1 5405 7147 -1479 * 304 26 0 0 chr11 27313405 27313444 -121470028 + HERV17 LTR ERV1 7510 7548 -1078 * 2235 39 0 4 chr11 27313434 27313714 -121469758 + HERV17 LTR ERV1 8335 8613 -13 257 268 116 63 chr11 27313714 27313727 -121469745 + MIR SINE MIR 34 45 -217 5291 109 14 9 chr11 27313727 27314503 -121468969 + LTR17 LTR ERV1 1 780 0 257 268 116 63 chr11 27314503 27314701 -121468771 + MIR SINE MIR 45 256 -6 1122 174 65 140 chr11 27315010 27315503 -121467969 + L1MB7 LINE L1 5729 6184 0 358 258 58 26 chr11 27316722 27316877 -121466595 + L1ME2 LINE L1 5995 6154 -10 22 0 0 0 chr11 27316885 27316907 -121466565 + AT_rich Low_complexity Low_complexity 1 22 0 1757 154 68 0 chr11 27316976 27317256 -121466216 - AluSx SINE Alu -13 299 1 2457 65 7 3 chr11 27318130 27318440 -121465032 + AluY SINE Alu 1 311 0 265 130 0 0 chr11 27318545 27318591 -121464881 + AluSc SINE Alu 252 297 -2 616 254 8 0 chr11 27318701 27318827 -121464645 + MER5B DNA MER1_type 43 169 -9 339 275 144 25 chr11 27319103 27319240 -121464232 - MIR SINE MIR -61 147 17 221 278 42 14 chr11 27319884 27319956 -121463516 - L2 LINE L2 -2933 381 308 199 308 19 67 chr11 27320129 27320233 -121463239 - MIR3 SINE MIR -7 201 103 204 245 0 38 chr11 27320347 27320400 -121463072 + L2 LINE L2 3222 3272 0 1980 100 4 0 chr11 27320505 27320799 -121462673 + AluSx SINE Alu 21 315 0 209 272 105 78 chr11 27322019 27322210 -121461262 + L2 LINE L2 3118 3313 0 266 219 62 21 chr11 27322212 27322308 -121461164 - L1ME4a LINE L1 -58 6063 5964 2336 110 3 0 chr11 27323220 27323529 -121459943 - AluSx SINE Alu -2 310 1 321 287 73 40 chr11 27323659 27323809 -121459663 - MIR SINE MIR -6 256 102 897 315 75 71 chr11 27324489 27324969 -121458503 + MER69 DNA AcHobo 2010 2491 -35 230 342 18 9 chr11 27325005 27325116 -121458356 - MIR SINE MIR -30 232 121 2821 306 151 23 chr11 27326175 27327365 -121456107 + L2 LINE L2 7 1407 -1907 2076 109 22 22 chr11 27327365 27327678 -121455794 - AluSq SINE Alu 0 313 1 2821 306 151 23 chr11 27327678 27327900 -121455572 + L2 LINE L2 1407 1599 -1715 776 272 32 51 chr11 27328093 27328409 -121455063 - L2 LINE L2 0 3313 3004 180 174 0 65 chr11 27328418 27328464 -121455008 - L2 LINE L2 0 3313 3271 340 347 55 15 chr11 27328588 27328838 -121454634 - MIR SINE MIR -1 261 4 711 234 181 27 chr11 27329248 27330016 -121453456 - Charlie2 DNA MER1_type 0 2862 1958 195 186 0 0 chr11 27330033 27330076 -121453396 + (TATG)n Simple_repeat Simple_repeat 2 44 0 185 105 0 26 chr11 27332944 27332982 -121450490 + (TC)n Simple_repeat Simple_repeat 2 38 0 26 74 0 0 chr11 27334785 27334839 -121448633 + AT_rich Low_complexity Low_complexity 1 54 0 491 236 35 80 chr11 27336563 27336762 -121446710 + MIR SINE MIR 22 211 -51 875 260 143 29 chr11 27336841 27337254 -121446218 - L1ME3A LINE L1 -32 6138 5677 469 238 92 37 chr11 27337774 27337938 -121445534 + MIR SINE MIR 34 206 -56 355 256 0 0 chr11 27340176 27340258 -121443214 + L1MC4 LINE L1 6614 6695 -1347 313 333 0 0 chr11 27340186 27340276 -121443196 - L1MC4 LINE L1 -1339 6703 6614 * 333 0 0 0 chr11 27341528 27341565 -121441907 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr11 27341653 27341686 -121441786 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr11 27343316 27343346 -121440126 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 27343620 27343641 -121439831 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chr11 27345084 27345124 -121438348 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr11 27347389 27347427 -121436045 + AT_rich Low_complexity Low_complexity 1 38 0 2469 57 0 0 chr11 27347482 27347780 -121435692 - AluY SINE Alu -13 298 1 504 269 67 13 chr11 27348319 27348468 -121435004 + MER5A DNA MER1_type 12 168 -21 760 272 42 8 chr11 27349974 27350213 -121433259 + L1MEc LINE L1 35 281 -6115 2036 258 42 23 chr11 27350331 27351026 -121432446 + L1ME1 LINE L1 5455 6162 -4 715 277 6 0 chr11 27351059 27351218 -121432254 - MER5B DNA MER1_type 0 178 19 277 333 93 22 chr11 27352796 27352979 -121430493 - MIR SINE MIR -56 206 11 3925 169 30 8 chr11 27353967 27354713 -121428759 + L1MB1 LINE L1 5405 6166 -2 40 87 0 0 chr11 27354716 27354819 -121428653 + AT_rich Low_complexity Low_complexity 1 103 0 219 274 84 32 chr11 27354852 27354947 -121428525 + MIR SINE MIR 49 148 -114 280 345 230 0 chr11 27357176 27357324 -121426148 - MER91A DNA MER1_type 0 196 15 22 35 0 0 chr11 27359378 27359407 -121424065 + AT_rich Low_complexity Low_complexity 1 29 0 2004 149 31 23 chr11 27359554 27359943 -121423529 - L1MA8 LINE L1 -18 6273 5882 204 40 0 0 chr11 27359973 27359998 -121423474 + (TG)n Simple_repeat Simple_repeat 2 26 0 635 189 0 0 chr11 27360013 27360124 -121423348 + L1MA8 LINE L1 5782 5892 -399 3616 67 0 0 chr11 27360350 27360813 -121422659 + L1PA5 LINE L1 5692 6154 0 1059 288 41 29 chr11 27360827 27361341 -121422131 + LTR33 LTR ERVL 2 521 0 22 35 0 0 chr11 27361380 27361409 -121422063 + AT_rich Low_complexity Low_complexity 1 29 0 539 311 60 33 chr11 27361661 27362121 -121421351 + LTR33A LTR ERVL 4 520 -3 22 56 0 0 chr11 27362515 27362551 -121420921 + AT_rich Low_complexity Low_complexity 1 36 0 6866 61 39 0 chr11 27362820 27363849 -121419623 - L1PA7 LINE L1 -6 6148 5108 1291 79 0 0 chr11 27363849 27364026 -121419446 - L1PA7 LINE L1 -2167 3979 3803 386 296 89 22 chr11 27364374 27364509 -121418963 + MIR SINE MIR 114 257 -5 369 0 0 0 chr11 27365097 27365138 -121418334 + (TG)n Simple_repeat Simple_repeat 2 42 0 398 284 142 17 chr11 27365722 27365898 -121417574 + MIR SINE MIR 65 262 0 560 282 39 0 chr11 27365980 27366136 -121417336 + MIR SINE MIR 101 262 0 23 0 0 0 chr11 27367247 27367270 -121416202 + AT_rich Low_complexity Low_complexity 1 23 0 341 208 0 0 chr11 27367568 27367640 -121415832 + L1ME4a LINE L1 5794 5865 -256 230 270 14 0 chr11 27367685 27367759 -121415713 + (TA)n Simple_repeat Simple_repeat 2 76 0 2100 129 7 0 chr11 27367929 27368232 -121415240 - AluSx SINE Alu -7 305 1 21 0 0 0 chr11 27368323 27368344 -121415128 + AT_rich Low_complexity Low_complexity 1 21 0 2367 87 0 3 chr11 27368387 27368698 -121414774 + AluY SINE Alu 1 310 -1 305 289 49 14 chr11 27368970 27369112 -121414360 - L1ME4a LINE L1 -23 6098 5952 388 324 67 0 chr11 27369281 27369534 -121413938 - L1ME4a LINE L1 -294 5827 5558 352 64 0 0 chr11 27370858 27370905 -121412567 - MADE1 DNA Mariner 0 80 34 643 349 50 17 chr11 27371310 27371857 -121411615 - L2 LINE L2 -82 3231 2671 214 364 15 0 chr11 27372271 27372337 -121411135 + L2 LINE L2 3119 3185 -87 30 69 0 0 chr11 27372518 27372576 -121410896 + AT_rich Low_complexity Low_complexity 1 58 0 2129 98 6 31 chr11 27373372 27373689 -121409783 - AluSc SINE Alu 0 309 1 526 28 28 0 chr11 27373753 27373825 -121409647 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 326 331 69 15 chr11 27373933 27374063 -121409409 + MIR SINE MIR 14 150 -112 342 277 32 11 chr11 27374211 27374305 -121409167 - MER5A DNA MER1_type -85 104 9 388 114 32 24 chr11 27374793 27374916 -121408556 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 224 348 80 9 chr11 27375248 27375360 -121408112 + MIR SINE MIR 21 140 -68 180 296 127 0 chr11 27375754 27375825 -121407647 + MIR SINE MIR 173 252 -10 303 333 9 27 chr11 27377884 27377995 -121405477 + MIR3 SINE MIR 87 195 -13 222 156 0 0 chr11 27378706 27378751 -121404721 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 296 406 33 69 chr11 27378752 27379171 -121404301 - L2 LINE L2 0 3272 2869 2032 196 103 12 chr11 27380319 27380714 -121402758 + MER67C LTR ERV1 2 501 -209 1745 142 91 28 chr11 27380714 27381067 -121402405 + THE1C LTR MaLR 1 375 0 2032 196 103 12 chr11 27381067 27381292 -121402180 + MER67C LTR ERV1 501 704 -6 213 39 0 0 chr11 27381787 27381813 -121401659 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2449 45 0 0 chr11 27381815 27382104 -121401368 - AluY SINE Alu -22 289 1 22 0 0 0 chr11 27382706 27382728 -121400744 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 27382761 27382788 -121400684 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 27383105 27383147 -121400325 + AT_rich Low_complexity Low_complexity 1 42 0 446 323 12 12 chr11 27383161 27383325 -121400147 + MER5B DNA MER1_type 14 177 -1 21 0 0 0 chr11 27383458 27383479 -121399993 + AT_rich Low_complexity Low_complexity 1 21 0 1123 216 150 13 chr11 27384245 27384551 -121398921 + MLT1A1 LTR MaLR 18 365 0 34 0 0 0 chr11 27385228 27385262 -121398210 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr11 27385358 27385395 -121398077 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr11 27385910 27385945 -121397527 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr11 27388338 27388382 -121395090 + AT_rich Low_complexity Low_complexity 1 44 0 259 184 83 64 chr11 27388610 27388719 -121394753 + MER103 DNA DNA 53 163 -3 573 290 92 18 chr11 27389427 27389644 -121393828 + MIR SINE MIR 20 252 -10 821 360 80 0 chr11 27390542 27390903 -121392569 + L2 LINE L2 2516 2905 -409 384 284 73 0 chr11 27390972 27391081 -121392391 + L2 LINE L2 3197 3313 0 316 375 67 13 chr11 27391875 27392099 -121391373 + L2 LINE L2 2615 2850 -464 385 222 79 56 chr11 27392115 27392241 -121391231 - MER5B DNA MER1_type -46 132 4 261 328 42 25 chr11 27393291 27393410 -121390062 + L2 LINE L2 3133 3253 -19 2100 110 27 0 chr11 27393857 27394149 -121389323 - AluSc SINE Alu -9 300 1 2072 130 10 0 chr11 27394399 27394698 -121388774 + AluSx SINE Alu 2 303 -9 216 212 0 0 chr11 27394888 27394954 -121388518 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr11 27394970 27395007 -121388465 + AT_rich Low_complexity Low_complexity 1 37 0 1459 277 39 9 chr11 27396388 27396850 -121386622 + MER110 LTR ERV1 1 476 -15 242 247 173 12 chr11 27396860 27396941 -121386531 - MIR SINE MIR -158 104 11 415 327 168 9 chr11 27397519 27397739 -121385733 - MIR SINE MIR 0 262 8 241 296 34 11 chr11 27397905 27397993 -121385479 + L2 LINE L2 1851 1940 -1374 1053 47 0 0 chr11 27397993 27398120 -121385352 - AluY SINE Alu -5 306 180 962 175 33 42 chr11 27398125 27398365 -121385107 + MSTA-int LTR MaLR 1343 1580 0 1633 183 126 23 chr11 27398365 27398753 -121384719 + MSTA LTR MaLR 1 428 0 576 102 31 10 chr11 27398754 27398852 -121384620 - L1M LINE L1 -889 5414 5315 * 1249 195 49 3 chr11 27398850 27399158 -121384314 + L1PB4 LINE L1 4982 5303 -843 24 0 0 0 chr11 27399209 27399233 -121384239 + AT_rich Low_complexity Low_complexity 1 24 0 2290 111 3 0 chr11 27399236 27399534 -121383938 + AluSg SINE Alu 1 299 -11 2569 102 8 0 chr11 27400258 27400610 -121382862 + THE1A LTR MaLR 1 355 0 8732 114 12 16 chr11 27400610 27401040 -121382432 + THE1A-int LTR MaLR 1 431 -1149 2152 117 0 0 chr11 27401040 27401351 -121382121 + AluSc SINE Alu 1 311 0 8732 114 12 16 chr11 27401351 27401554 -121381918 + THE1A-int LTR MaLR 431 633 -947 5212 82 4 11 chr11 27401554 27402247 -121381225 - LTR12 LTR ERV1 0 688 1 8732 114 12 16 chr11 27402247 27402904 -121380568 + THE1A-int LTR MaLR 633 1289 -291 4200 130 66 24 chr11 27403004 27403071 -121380401 + L1PB4 LINE L1 5347 5410 -746 1633 183 126 23 chr11 27403071 27403459 -121380013 - MSTA LTR MaLR 0 428 1 7307 177 108 9 chr11 27403459 27404961 -121378511 - MSTA-int LTR MaLR 0 1651 1 2157 123 121 21 chr11 27404961 27405350 -121378122 - MSTA LTR MaLR 0 428 1 4200 130 66 24 chr11 27405350 27406058 -121377414 + L1PB4 LINE L1 5409 6156 0 351 0 0 0 chr11 27406196 27406235 -121377237 + (CA)n Simple_repeat Simple_repeat 2 40 0 677 35 0 0 chr11 27406355 27406442 -121377030 + L1PA4 LINE L1 6066 6152 -3 1481 199 3 22 chr11 27406466 27406782 -121376690 + AluJo SINE Alu 3 312 0 274 255 29 49 chr11 27407443 27407545 -121375927 + MIR SINE MIR 49 148 -114 732 281 8 54 chr11 27407552 27407794 -121375678 - MIR SINE MIR -14 248 18 225 0 0 0 chr11 27407820 27407845 -121375627 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1876 142 21 0 chr11 27407849 27408130 -121375342 - AluSx SINE Alu -25 287 1 2391 105 34 0 chr11 27408954 27409306 -121374166 + THE1B LTR MaLR 1 364 0 293 276 5 153 chr11 27409370 27409566 -121373906 - MLT1K LTR MaLR 0 588 422 436 303 29 54 chr11 27409650 27410010 -121373462 - MER93a LTR ERV1 -8 395 19 259 292 85 31 chr11 27410054 27410184 -121373288 - MLT1K LTR MaLR -287 301 165 381 298 84 47 chr11 27410629 27410844 -121372628 - L1ME LINE L1 -302 5819 5597 248 398 65 57 chr11 27410953 27411322 -121372150 - L2 LINE L2 -1 3271 2900 180 0 0 0 chr11 27411709 27411729 -121371743 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 393 22 0 0 chr11 27411728 27411774 -121371698 + (CA)n Simple_repeat Simple_repeat 1 46 0 480 358 89 36 chr11 27412123 27412537 -121370935 + L2 LINE L2 2812 3247 -25 754 200 32 26 chr11 27412576 27412761 -121370711 + MER5A DNA MER1_type 1 178 0 33 0 0 0 chr11 27412894 27412927 -121370545 + AT_rich Low_complexity Low_complexity 1 33 0 31 88 0 0 chr11 27414161 27414241 -121369231 + AT_rich Low_complexity Low_complexity 1 80 0 492 279 112 0 chr11 27416126 27416287 -121367185 + MIR SINE MIR 2 180 -82 439 253 86 48 chr11 27417472 27417658 -121365814 + MIR SINE MIR 62 254 -8 276 284 68 23 chr11 27417734 27417822 -121365650 + MIR SINE MIR 2 93 -169 322 350 103 58 chr11 27417889 27418223 -121365249 - L1ME4a LINE L1 -94 6027 5663 1643 161 6 59 chr11 27418223 27418545 -121364927 - AluJb SINE Alu -5 307 3 322 350 103 58 chr11 27418545 27418696 -121364776 - L1ME4a LINE L1 -458 5663 5520 3666 119 41 10 chr11 27420895 27421509 -121361963 + L1MA3 LINE L1 5671 6303 -2 1150 262 150 28 chr11 27421909 27422336 -121361136 - MLT1H LTR MaLR -70 479 1 459 0 0 0 chr11 27423344 27423395 -121360077 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 399 21 0 0 chr11 27423497 27423545 -121359927 + (CA)n Simple_repeat Simple_repeat 1 48 0 320 351 135 10 chr11 27425030 27425238 -121358234 - MIR SINE MIR -26 236 3 395 338 57 22 chr11 27426749 27426977 -121356495 - MIR SINE MIR -4 258 23 378 320 152 26 chr11 27427022 27427331 -121356141 - L2 LINE L2 -4 3309 2962 198 118 0 0 chr11 27427563 27427597 -121355875 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 366 80 0 0 chr11 27428181 27428231 -121355241 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 549 179 7 11 chr11 27428290 27428407 -121355065 + L1PA15 LINE L1 6047 6166 0 564 204 0 26 chr11 27428557 27428670 -121354802 + MSTB LTR MaLR 1 110 -316 443 237 59 0 chr11 27428796 27428914 -121354558 + L2 LINE L2 2401 2525 -789 180 176 0 0 chr11 27429045 27429079 -121354393 + (TATG)n Simple_repeat Simple_repeat 3 36 0 394 250 23 0 chr11 27429097 27429185 -121354287 + L2 LINE L2 3222 3311 -2 679 332 126 11 chr11 27429297 27429760 -121353712 + L2 LINE L2 2625 3149 -164 306 271 88 35 chr11 27429815 27429985 -121353487 + L2 LINE L2 3135 3313 0 402 67 0 17 chr11 27431367 27431427 -121352045 - L1PA6 LINE L1 -2 6152 6094 44629 39 4 1 chr11 27431436 27437571 -121345901 - L1PA3 LINE L1 0 6155 2 253 318 113 26 chr11 27437975 27438126 -121345346 - MIR SINE MIR -94 168 5 2204 96 7 13 chr11 27438611 27438913 -121344559 + AluSq SINE Alu 1 300 -13 336 48 0 0 chr11 27439137 27439179 -121344293 + (TG)n Simple_repeat Simple_repeat 1 42 0 246 111 0 0 chr11 27439179 27439218 -121344254 + (GA)n Simple_repeat Simple_repeat 2 40 0 321 274 178 13 chr11 27439253 27439410 -121344062 - L2 LINE L2 -15 3298 3116 839 332 65 14 chr11 27439462 27439875 -121343597 - L2 LINE L2 -370 2944 2511 2122 115 7 7 chr11 27440478 27440773 -121342699 - AluSx SINE Alu -17 295 1 2209 114 3 0 chr11 27441029 27441328 -121342144 + AluSg SINE Alu 1 300 -10 2850 13 0 0 chr11 27442676 27442986 -121340486 + AluYa5 SINE Alu 1 310 -1 933 284 64 60 chr11 27443191 27443705 -121339767 + L2 LINE L2 158 673 -2641 340 159 30 2 chr11 27443750 27443839 -121339633 + MSTB2 LTR MaLR 294 372 -3 27 49 0 0 chr11 27444188 27444229 -121339243 + AT_rich Low_complexity Low_complexity 1 41 0 1043 216 33 16 chr11 27444445 27444690 -121338782 - L1MB7 LINE L1 0 6184 5936 * 2833 209 25 32 chr11 27444684 27445298 -121338174 - L1MB7 LINE L1 -920 5226 4616 1610 136 21 100 chr11 27445298 27445628 -121337844 - AluYb8 SINE Alu -14 304 1 2833 209 25 32 chr11 27445628 27445694 -121337778 - L1MB7 LINE L1 -1530 4616 4551 566 260 33 7 chr11 27445681 27445831 -121337641 - L1M4 LINE L1 -890 5256 5103 * 401 314 114 33 chr11 27445956 27446255 -121337217 - L1M4 LINE L1 -2096 4050 3728 732 160 56 0 chr11 27446308 27446433 -121337039 + L1PA16 LINE L1 5909 6040 -126 * 7107 227 53 14 chr11 27446432 27448026 -121335446 + L1PA12 LINE L1 1 1656 -5925 3514 180 52 8 chr11 27448058 27448899 -121334573 + L1PA12 LINE L1 2433 3315 -4269 9006 60 2 0 chr11 27498940 27500118 -121283354 + L1PA12 LINE L1 3589 4769 -2815 516 366 15 26 chr11 27500220 27500493 -121282979 + L2 LINE L2 2608 2877 -437 7593 28 0 2 chr11 27500610 27501785 -121281687 + L1PA4 LINE L1 4983 6155 0 194 309 100 27 chr11 27503859 27503969 -121279503 + MIR SINE MIR 36 153 -109 363 182 0 0 chr11 27504019 27504107 -121279365 + L1MA8 LINE L1 6204 6291 0 300 232 40 72 chr11 27504596 27504721 -121278751 + MIR SINE MIR 90 210 -52 242 241 69 23 chr11 27504762 27504849 -121278623 + MIR3 SINE MIR 105 195 -13 393 22 0 0 chr11 27504933 27504979 -121278493 + (TA)n Simple_repeat Simple_repeat 2 47 0 690 111 10 0 chr11 27505454 27505553 -121277919 + L1P LINE L1 2 101 -6045 * 10636 97 7 22 chr11 27505544 27507118 -121276354 + L1P LINE L1 617 2166 -3980 2058 197 13 3 chr11 27507223 27507609 -121275863 - MSTB-int LTR MaLR -1261 390 1 2246 186 9 32 chr11 27507609 27508045 -121275427 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr11 27509001 27509023 -121274449 + AT_rich Low_complexity Low_complexity 1 22 0 1819 194 53 10 chr11 27509273 27509767 -121273705 - MER69 DNA AcHobo -13 2513 1999 471 356 21 5 chr11 27509763 27509951 -121273521 - MER69 DNA AcHobo -1969 557 367 * 312 143 20 0 chr11 27509978 27510027 -121273445 - L2 LINE L2 -560 2754 2705 24 53 0 0 chr11 27510356 27510394 -121273078 + AT_rich Low_complexity Low_complexity 1 38 0 2202 183 27 27 chr11 27510864 27511350 -121272122 - L1MB3 LINE L1 -4 6179 5694 267 260 120 20 chr11 27511786 27511886 -121271586 - MER117 DNA MER1_type -45 152 43 529 311 80 9 chr11 27512337 27512562 -121270910 - HERV16 LTR ERVL -4755 241 1 619 257 98 86 chr11 27512594 27512932 -121270540 - LTR16A LTR ERVL -32 418 77 214 267 0 0 chr11 27513435 27513480 -121269992 + MIR SINE MIR 64 108 -100 2058 110 4 0 chr11 27514608 27514881 -121268591 + AluSx SINE Alu 1 274 -38 1538 115 0 5 chr11 27514982 27515191 -121268281 - AluSg SINE Alu -98 212 5 568 303 48 21 chr11 27515598 27515843 -121267629 + MIR SINE MIR 14 261 -1 396 332 78 30 chr11 27516194 27516528 -121266944 + MLT1K LTR MaLR 194 543 -45 6806 71 7 11 chr11 27516530 27516954 -121266518 + L1PA8 LINE L1 4870 5294 -878 2557 45 3 3 chr11 27516954 27517262 -121266210 + AluY SINE Alu 1 308 -3 6806 71 7 11 chr11 27517262 27518141 -121265331 + L1PA8 LINE L1 5294 6170 -2 1143 228 71 77 chr11 27518759 27519198 -121264274 - MLT2B1 LTR ERVL 0 520 85 282 240 80 57 chr11 27519433 27519608 -121263864 + L1MC/D LINE L1 5566 5744 -377 249 202 48 12 chr11 27519633 27519717 -121263755 + L1MC/D LINE L1 5796 5882 -1926 2023 115 17 3 chr11 27520317 27520605 -121262867 + AluSc SINE Alu 1 292 -17 5628 136 20 3 chr11 27520620 27521508 -121261964 - L1PA16 LINE L1 -9 6157 5255 2186 123 0 0 chr11 27521807 27522115 -121261357 - AluSc SINE Alu -1 308 1 274 349 29 16 chr11 27522947 27523077 -121260395 - MIR3 SINE MIR -48 160 28 2327 110 0 0 chr11 27523180 27523489 -121259983 + AluSg SINE Alu 1 309 -1 296 276 92 0 chr11 27523727 27523825 -121259647 + MIR3 SINE MIR 93 199 -9 228 276 58 11 chr11 27523839 27523926 -121259546 + L2 LINE L2 2037 2127 -1187 213 132 0 0 chr11 27523948 27523986 -121259486 + (GA)n Simple_repeat Simple_repeat 1 38 0 413 131 12 0 chr11 27524051 27524135 -121259337 + (TG)n Simple_repeat Simple_repeat 1 85 0 2115 256 47 104 chr11 27524150 27525187 -121258285 + L2 LINE L2 1140 2117 -1197 456 354 35 9 chr11 27525682 27525911 -121257561 + MIR SINE MIR 9 243 -19 249 33 0 0 chr11 27526424 27526454 -121257018 + (CA)n Simple_repeat Simple_repeat 1 30 0 216 286 57 0 chr11 27526454 27526524 -121256948 + L3 LINE CR1 1184 1257 -320 21 57 0 0 chr11 27526558 27526593 -121256879 + AT_rich Low_complexity Low_complexity 1 35 0 336 345 73 6 chr11 27526593 27526758 -121256714 + L3 LINE CR1 1392 1567 -10 2749 161 43 6 chr11 27528210 27528702 -121254770 - MER41E LTR ERV1 -2 510 1 217 127 0 55 chr11 27528836 27528891 -121254581 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1913 122 10 3 chr11 27528891 27529179 -121254293 - AluSc SINE Alu -19 290 1 757 189 110 63 chr11 27529537 27529791 -121253681 + L1MA10 LINE L1 6057 6322 -12 858 272 99 84 chr11 27529861 27530859 -121252613 - HAL1 LINE L1 -79 2428 1404 2349 102 0 0 chr11 27530859 27531172 -121252300 - AluSq SINE Alu 0 313 1 858 272 99 84 chr11 27531172 27531470 -121252002 - HAL1 LINE L1 -1103 1404 1112 2328 259 71 28 chr11 27531570 27531922 -121251550 - L1ME1 LINE L1 -30 6634 6298 1835 197 78 27 chr11 27531922 27532399 -121251073 - MLT1D LTR MaLR 0 505 5 2328 259 71 28 chr11 27532399 27533483 -121249989 - L1ME1 LINE L1 -366 6298 5127 2369 77 0 0 chr11 27533483 27533782 -121249690 - AluSc SINE Alu -10 299 1 2328 259 71 28 chr11 27533782 27533869 -121249603 - L1ME1 LINE L1 -1537 5127 5045 410 299 86 30 chr11 27533907 27534104 -121249368 - L1ME1 LINE L1 -4871 1671 1464 2355 273 68 51 chr11 27534104 27535129 -121248343 - L1ME1 LINE L1 -5238 1587 545 216 0 0 0 chr11 27535189 27535213 -121248259 + (TG)n Simple_repeat Simple_repeat 2 25 0 207 257 35 9 chr11 27535220 27535333 -121248139 + (TA)n Simple_repeat Simple_repeat 1 116 0 2959 142 43 6 chr11 27535611 27536103 -121247369 + MER41E LTR ERV1 1 510 -2 39 0 0 0 chr11 27536600 27536639 -121246833 + AT_rich Low_complexity Low_complexity 1 39 0 1656 170 25 0 chr11 27537150 27537427 -121246045 + MER57A LTR ERV1 1 284 -119 31 44 0 0 chr11 27537565 27537610 -121245862 + AT_rich Low_complexity Low_complexity 1 45 0 405 329 98 31 chr11 27537999 27538285 -121245187 + HAL1b LINE L1 251 555 -793 221 269 0 30 chr11 27538910 27538977 -121244495 + CT-rich Low_complexity Low_complexity 1 65 0 2522 52 0 0 chr11 27539154 27539464 -121244008 + AluY SINE Alu 1 310 -1 194 362 153 12 chr11 27540136 27540299 -121243173 + L2 LINE L2 3087 3272 0 353 333 103 23 chr11 27541721 27541895 -121241577 - MIR SINE MIR -22 240 53 292 297 27 0 chr11 27542261 27542335 -121241137 + L2 LINE L2 3229 3304 -9 407 352 77 0 chr11 27542803 27542985 -121240487 + MIR SINE MIR 49 244 -18 463 309 111 14 chr11 27543025 27543232 -121240240 + MIR SINE MIR 11 237 -25 812 172 8 0 chr11 27543427 27543585 -121239887 - AluSg/x SINE Alu 0 303 145 410 168 35 0 chr11 27543691 27543804 -121239668 + (TA)n Simple_repeat Simple_repeat 2 118 0 220 362 80 44 chr11 27543884 27544109 -121239363 - MIR SINE MIR -15 247 16 356 287 93 0 chr11 27544190 27544298 -121239174 + L2 LINE L2 3193 3310 -3 181 344 23 76 chr11 27545396 27545527 -121237945 + MIR SINE MIR 16 139 -69 704 226 5 85 chr11 27545559 27545758 -121237714 + MIR SINE MIR 5 187 -75 * 1096 262 19 16 chr11 27545757 27546013 -121237459 + MIR SINE MIR 6 262 0 248 329 73 0 chr11 27546067 27546149 -121237323 - L2 LINE L2 -36 3236 3149 403 256 181 23 chr11 27546625 27546758 -121236714 + MER5A DNA MER1_type 30 183 -6 479 280 73 13 chr11 27546813 27546963 -121236509 - MER5B DNA MER1_type -19 159 1 2241 53 3 23 chr11 27548391 27548693 -121234779 - AluY SINE Alu -15 296 1 306 331 41 0 chr11 27548741 27548862 -121234610 + MIR SINE MIR 63 188 -74 315 301 160 24 chr11 27548920 27549295 -121234177 + L2 LINE L2 2454 2879 -435 266 339 197 3 chr11 27549345 27549634 -121233838 + L2 LINE L2 2969 3313 0 411 38 0 0 chr11 27549944 27549997 -121233475 + (TA)n Simple_repeat Simple_repeat 2 54 0 1314 231 94 24 chr11 27550028 27550581 -121232891 + MER69 DNA AcHobo 1932 2523 -3 22 56 0 0 chr11 27551586 27551622 -121231850 + AT_rich Low_complexity Low_complexity 1 36 0 686 314 0 0 chr11 27552094 27552263 -121231209 + MIR SINE MIR 67 235 -27 458 305 69 17 chr11 27552342 27552516 -121230956 + LTR16B LTR ERVL 3 185 -279 22 0 0 0 chr11 27553337 27553359 -121230113 + AT_rich Low_complexity Low_complexity 1 22 0 1846 184 51 8 chr11 27553922 27554296 -121229176 + MLT1B LTR MaLR 1 390 0 525 330 159 8 chr11 27555228 27555579 -121227893 - LTR33A LTR ERVL -4 519 116 1283 207 69 46 chr11 27555910 27556104 -121227368 - MLT1A1 LTR MaLR 0 365 177 189 0 0 0 chr11 27556104 27556125 -121227347 + (TC)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr11 27556124 27556145 -121227327 + (TG)n Simple_repeat Simple_repeat 2 22 0 1283 207 69 46 chr11 27556125 27556298 -121227174 - MLT1A1 LTR MaLR -188 177 10 246 327 79 10 chr11 27558435 27558536 -121224936 + MIR SINE MIR 84 191 -71 1972 97 10 68 chr11 27559191 27559499 -121223973 - AluSc SINE Alu -19 290 1 210 304 0 43 chr11 27560444 27560513 -121222959 + L2 LINE L2 3246 3311 -2 21 0 0 0 chr11 27561336 27561357 -121222115 + AT_rich Low_complexity Low_complexity 1 21 0 195 184 0 0 chr11 27561678 27561716 -121221756 + (CATA)n Simple_repeat Simple_repeat 3 40 0 866 275 15 0 chr11 27561846 27562046 -121221426 - MER20 DNA MER1_type -15 204 2 2189 75 0 14 chr11 27563295 27563587 -121219885 + AluSg SINE Alu 13 300 -10 492 345 42 29 chr11 27563851 27564233 -121219239 + L1MC4 LINE L1 4771 5157 -989 24 24 0 24 chr11 27564297 27564324 -121219148 + AT_rich Low_complexity Low_complexity 1 28 -13 2219 119 37 3 chr11 27564324 27564676 -121218796 - THE1B LTR MaLR 0 364 1 24 24 0 24 chr11 27564676 27564690 -121218782 + AT_rich Low_complexity Low_complexity 28 41 0 836 273 80 51 chr11 27564695 27564833 -121218639 + L1MC4 LINE L1 5265 5398 -2410 225 0 0 0 chr11 27564833 27564858 -121218614 + (TA)n Simple_repeat Simple_repeat 1 25 0 836 273 80 51 chr11 27564858 27565108 -121218364 + L1MC4 LINE L1 5398 5664 -2144 1807 259 114 2 chr11 27565127 27565706 -121217766 + LTR48B LTR ERV1 1 644 0 1343 300 55 25 chr11 27565759 27566293 -121217179 + L1MC4 LINE L1 7044 7608 -434 423 0 0 0 chr11 27566293 27566340 -121217132 + (CA)n Simple_repeat Simple_repeat 1 47 0 1343 300 55 25 chr11 27566340 27566549 -121216923 + L1MC4 LINE L1 7608 7809 -233 191 395 13 0 chr11 27566919 27566995 -121216477 - MIR SINE MIR -180 82 6 283 297 35 15 chr11 27566998 27567085 -121216387 - MER5A DNA MER1_type -57 132 34 2047 134 10 0 chr11 27567168 27567475 -121215997 - AluSg SINE Alu 0 310 1 263 130 19 0 chr11 27567995 27568049 -121215423 + GA-rich Low_complexity Low_complexity 2 56 0 467 348 12 6 chr11 27568196 27568360 -121215112 + MER5A DNA MER1_type 10 174 -15 269 330 102 30 chr11 27568485 27568682 -121214790 - MIR SINE MIR -41 221 11 600 284 12 12 chr11 27569422 27569584 -121213888 + MIR SINE MIR 7 168 -94 25 51 0 0 chr11 27569611 27569650 -121213822 + AT_rich Low_complexity Low_complexity 1 39 0 2233 113 27 43 chr11 27570016 27570386 -121213086 - THE1B LTR MaLR 0 364 1 26 50 0 0 chr11 27570428 27570468 -121213004 + AT_rich Low_complexity Low_complexity 1 40 0 543 346 69 4 chr11 27571082 27571313 -121212159 - MIR SINE MIR 0 262 17 583 302 143 24 chr11 27571536 27571914 -121211558 - L2 LINE L2 -2 3311 2889 23 33 0 0 chr11 27572156 27572186 -121211286 + AT_rich Low_complexity Low_complexity 1 30 0 59 46 0 0 chr11 27572249 27572336 -121211136 + AT_rich Low_complexity Low_complexity 1 87 0 389 261 77 68 chr11 27572546 27572753 -121210719 + L2 LINE L2 3082 3290 -23 201 74 0 0 chr11 27572761 27572788 -121210684 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 31 0 0 0 chr11 27573886 27573917 -121209555 + AT_rich Low_complexity Low_complexity 1 31 0 2525 53 0 0 chr11 27574476 27574780 -121208692 - AluY SINE Alu -7 304 1 23 54 0 0 chr11 27574843 27574880 -121208592 + AT_rich Low_complexity Low_complexity 1 37 0 1317 248 143 49 chr11 27574951 27575620 -121207852 + L1MC4a LINE L1 5536 6267 -1541 317 342 20 34 chr11 27576811 27576960 -121206512 - MIR SINE MIR -115 147 1 3053 96 46 4 chr11 27578668 27579126 -121204346 - L1PA13 LINE L1 -3 6160 5684 342 333 48 0 chr11 27579683 27579809 -121203663 - MIR SINE MIR -111 151 20 1430 316 51 8 chr11 27579928 27580418 -121203054 - LTR33 LTR ERVL -10 511 1 300 331 26 74 chr11 27580981 27581250 -121202222 + L2 LINE L2 3056 3311 -2 270 308 39 19 chr11 27581284 27581388 -121202084 - L2 LINE L2 -4 3309 3204 2188 143 41 0 chr11 27581484 27581827 -121201645 + MSTA LTR MaLR 72 428 0 32 67 0 0 chr11 27583094 27583154 -121200318 + AT_rich Low_complexity Low_complexity 1 60 0 436 263 34 51 chr11 27583177 27583352 -121200120 + MER66A LTR ERV1 298 469 -9 695 241 20 15 chr11 27583356 27583555 -121199917 - L1ME2 LINE L1 -282 5882 5683 1901 111 4 4 chr11 27584092 27584363 -121199109 + AluSc SINE Alu 39 309 0 342 91 0 0 chr11 27585674 27585729 -121197743 + (CA)n Simple_repeat Simple_repeat 1 55 0 5410 90 0 0 chr11 27586008 27586743 -121196729 - L1PA8 LINE L1 0 6172 5438 22 35 0 0 chr11 27587190 27587219 -121196253 + AT_rich Low_complexity Low_complexity 1 29 0 327 49 0 0 chr11 27587943 27587984 -121195488 + (CA)n Simple_repeat Simple_repeat 1 41 0 279 308 124 24 chr11 27588427 27588596 -121194876 - MIR SINE MIR -1 261 76 661 315 119 3 chr11 27589954 27590265 -121193207 - L3 LINE CR1 -102 1475 1129 185 287 45 104 chr11 27590421 27590623 -121192849 + L2 LINE L2 3107 3296 -17 225 366 20 10 chr11 27590686 27590787 -121192685 - L3 LINE CR1 -854 723 622 254 247 67 56 chr11 27591430 27591519 -121191953 - L2 LINE L2 -3 3310 3221 339 302 34 20 chr11 27592924 27593073 -121190399 + MIR SINE MIR 91 241 -21 226 384 20 20 chr11 27594143 27594294 -121189178 + MIR3 SINE MIR 49 199 -9 2585 69 3 3 chr11 27594326 27594674 -121188798 - L1PA13 LINE L1 0 6163 5816 1828 141 49 30 chr11 27595934 27596302 -121187170 + THE1C LTR MaLR 1 375 0 2135 192 41 3 chr11 27596724 27597114 -121186358 + MER47B DNA MER2_type 4 408 -10 252 326 30 37 chr11 27597148 27597283 -121186189 - MIR3 SINE MIR -41 167 34 269 190 0 155 chr11 27597775 27597891 -121185581 + MLT1J1 LTR MaLR 60 157 -289 250 62 62 0 chr11 27598088 27598136 -121185336 + CT-rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr11 27598249 27598276 -121185196 + AT_rich Low_complexity Low_complexity 1 27 0 1410 154 194 4 chr11 27598855 27599134 -121184338 - MER1B DNA MER1_type -3 336 5 2156 129 3 0 chr11 27599535 27599844 -121183628 - AluSg SINE Alu 0 310 1 230 272 248 52 chr11 27600260 27600550 -121182922 - L2 LINE L2 0 3313 2967 2297 98 0 0 chr11 27600899 27601194 -121182278 - AluSx SINE Alu -2 310 16 1582 178 128 3 chr11 27601216 27601537 -121181935 + MLT1A1 LTR MaLR 1 361 -4 313 239 0 0 chr11 27601657 27601728 -121181744 - MIR SINE MIR 0 262 192 750 331 48 30 chr11 27601958 27602108 -121181364 + L2 LINE L2 2411 2557 -757 1639 183 7 36 chr11 27602108 27602409 -121181063 - AluJb SINE Alu -20 292 1 750 331 48 30 chr11 27602409 27602693 -121180779 + L2 LINE L2 2557 2853 -461 415 83 42 10 chr11 27603455 27603551 -121179921 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 550 304 97 25 chr11 27603934 27604876 -121178596 - L1MDa LINE L1 -4583 1546 532 1078 212 13 0 chr11 27604999 27605235 -121178237 + Tigger6 DNA MER2_type 1 239 -1358 2028 124 69 44 chr11 27606522 27606865 -121176607 + MER1A DNA MER1_type 5 338 -2364 2010 134 0 0 chr11 27606865 27607140 -121176332 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr11 27607144 27607164 -121176308 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2028 124 69 44 chr11 27607164 27607242 -121176230 + MER1A DNA MER1_type 340 484 -45 26 30 0 0 chr11 27608111 27608144 -121175328 + AT_rich Low_complexity Low_complexity 1 33 0 250 386 55 14 chr11 27608197 27608342 -121175130 - MIR SINE MIR -93 169 19 2045 164 16 26 chr11 27608347 27608726 -121174746 - THE1C LTR MaLR 0 375 1 315 331 75 47 chr11 27609063 27609317 -121174155 + L2 LINE L2 3052 3312 -1 2519 102 19 16 chr11 27609496 27609870 -121173602 - THE1C LTR MaLR 0 375 1 9001 135 36 44 chr11 27609870 27611462 -121172010 - THE1C-int LTR MaLR 0 1580 1 2183 135 47 16 chr11 27611462 27611826 -121171646 - THE1C LTR MaLR 0 375 1 281 159 0 29 chr11 27612473 27612542 -121170930 + GA-rich Low_complexity Low_complexity 3 69 0 205 255 0 0 chr11 27612733 27612780 -121170692 + (CA)n Simple_repeat Simple_repeat 2 48 0 26 50 0 0 chr11 27612997 27613037 -121170435 + AT_rich Low_complexity Low_complexity 1 40 0 204 97 0 0 chr11 27613214 27613245 -121170227 + (CA)n Simple_repeat Simple_repeat 1 31 0 215 245 11 0 chr11 27613259 27613353 -121170119 + CT-rich Low_complexity Low_complexity 1 95 0 2136 170 16 56 chr11 27613841 27614287 -121169185 + MSTA LTR MaLR 1 428 0 2021 161 19 0 chr11 27614287 27614648 -121168824 + MSTA-int LTR MaLR 1 368 -1283 321 98 0 20 chr11 27614653 27614704 -121168768 + MSTA-int LTR MaLR 486 535 -1116 * 2197 67 0 3 chr11 27614702 27614999 -121168473 - L1P LINE L1 -1056 5090 4795 7125 41 19 1 chr11 27614999 27615906 -121167566 + L1PA5 LINE L1 5222 6147 -7 441 0 0 0 chr11 27615906 27615955 -121167517 + (TA)n Simple_repeat Simple_repeat 1 49 0 5573 211 16 7 chr11 27615972 27617069 -121166403 + MSTA-int LTR MaLR 546 1651 0 2348 173 14 7 chr11 27617069 27617490 -121165982 + MSTA LTR MaLR 1 424 -4 1413 230 49 11 chr11 27618240 27618605 -121164867 + MLT1B LTR MaLR 1 379 -11 225 318 34 11 chr11 27618677 27618765 -121164707 + MIR SINE MIR 58 147 -61 210 358 84 0 chr11 27619018 27619113 -121164359 - L2 LINE L2 -6 3307 3205 254 250 0 42 chr11 27621479 27621575 -121161897 + L1MC4 LINE L1 6614 6705 -1337 201 176 0 0 chr11 27621575 27621609 -121161863 + (TA)n Simple_repeat Simple_repeat 2 35 0 441 0 0 0 chr11 27621781 27621830 -121161642 + (CA)n Simple_repeat Simple_repeat 1 49 0 1066 230 85 48 chr11 27622085 27622437 -121161035 + MLT1A1 LTR MaLR 1 365 0 224 333 68 26 chr11 27622615 27622732 -121160740 - MER5A DNA MER1_type -11 178 57 423 0 0 0 chr11 27623526 27623573 -121159899 + (CA)n Simple_repeat Simple_repeat 2 48 0 1178 311 61 28 chr11 27624289 27625075 -121158397 - L2 LINE L2 0 3313 2497 783 246 34 79 chr11 27625175 27625553 -121157919 + L1MC5 LINE L1 7183 7543 -418 1980 102 7 0 chr11 27625634 27625928 -121157544 - L1PA13 LINE L1 -5 6158 5863 3477 126 42 6 chr11 27625928 27626543 -121156929 + L1PA13 LINE L1 5204 5837 -331 1510 174 0 8 chr11 27626669 27626911 -121156561 - AluSx SINE Alu -69 243 4 240 236 0 28 chr11 27627591 27627663 -121155809 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 201 147 0 0 chr11 27627771 27627805 -121155667 + (TA)n Simple_repeat Simple_repeat 2 35 0 202 0 29 57 chr11 27628369 27628404 -121155068 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 232 330 9 43 chr11 27629502 27629617 -121153855 + L2 LINE L2 2945 3055 -217 27 0 0 0 chr11 27629927 27629954 -121153518 + AT_rich Low_complexity Low_complexity 1 27 0 1683 141 0 0 chr11 27630663 27630946 -121152526 + L1MA5A LINE L1 6013 6295 -2 6893 60 12 0 chr11 27631554 27632883 -121150589 - L1PA7 LINE L1 -3 6151 4820 3402 99 0 4 chr11 27632884 27633387 -121150085 + L1PA7 LINE L1 4308 4808 -1338 2224 113 7 0 chr11 27633631 27633941 -121149531 + AluSq SINE Alu 1 312 -1 186 316 18 18 chr11 27635394 27635451 -121148021 - L3b LINE CR1 -5 1578 1522 266 268 186 0 chr11 27635592 27635689 -121147783 - MIR SINE MIR -102 160 46 25 0 0 0 chr11 27636242 27636267 -121147205 + AT_rich Low_complexity Low_complexity 1 25 0 1769 188 54 47 chr11 27637029 27637454 -121146018 + MSTC LTR MaLR 1 428 0 22 0 0 0 chr11 27638611 27638633 -121144839 + AT_rich Low_complexity Low_complexity 1 22 0 222 91 0 0 chr11 27639047 27639080 -121144392 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 581 238 81 23 chr11 27639114 27639286 -121144186 - MIR SINE MIR -80 182 1 390 293 43 21 chr11 27639819 27640007 -121143465 + MIR SINE MIR 71 262 0 22 0 0 0 chr11 27640183 27640205 -121143267 + AT_rich Low_complexity Low_complexity 1 22 0 256 232 30 36 chr11 27640338 27640506 -121142966 + A-rich Low_complexity Low_complexity 6 172 0 549 296 72 45 chr11 27640664 27641181 -121142291 + L1MEd LINE L1 564 1094 -5025 915 130 0 0 chr11 27641235 27641366 -121142106 + AluSg SINE Alu 1 131 -179 207 69 0 0 chr11 27641403 27641432 -121142040 + (TC)n Simple_repeat Simple_repeat 2 30 0 2356 245 138 42 chr11 27641464 27642602 -121140870 - L1MC4 LINE L1 -144 7898 6652 303 28 0 0 chr11 27642655 27642691 -121140781 + (TG)n Simple_repeat Simple_repeat 1 36 0 1483 213 33 53 chr11 27642733 27643196 -121140276 + MLT1D LTR MaLR 6 505 0 380 283 0 0 chr11 27643217 27643323 -121140149 - L1MC4 LINE L1 -1477 6565 6460 444 321 30 46 chr11 27643710 27643972 -121139500 - L2 LINE L2 -628 2686 2429 256 275 117 59 chr11 27643976 27644198 -121139274 - HAL1 LINE L1 -2125 382 148 21 0 0 0 chr11 27644256 27644277 -121139195 + AT_rich Low_complexity Low_complexity 1 21 0 2326 96 0 13 chr11 27644307 27644621 -121138851 + AluSg SINE Alu 1 310 0 191 260 0 0 chr11 27644635 27644685 -121138787 + MIR SINE MIR 213 262 0 461 284 62 25 chr11 27644814 27644976 -121138496 + L1MD2 LINE L1 5978 6145 -214 298 157 29 14 chr11 27644974 27645044 -121138428 + L1MC4a LINE L1 7659 7729 -79 * 1209 253 20 83 chr11 27645049 27645508 -121137964 + L1M4 LINE L1 8 437 -6105 811 182 41 0 chr11 27645513 27645683 -121137789 - L1M4 LINE L1 -743 5403 5227 25 31 0 0 chr11 27645809 27645841 -121137631 + AT_rich Low_complexity Low_complexity 1 32 0 186 333 23 11 chr11 27645973 27646060 -121137412 + L2 LINE L2 2594 2681 -633 204 135 0 0 chr11 27646219 27646256 -121137216 + (CA)n Simple_repeat Simple_repeat 2 38 0 425 321 63 51 chr11 27646263 27646500 -121136972 - LTR16C LTR ERVL -5 486 247 228 343 0 15 chr11 27646863 27646930 -121136542 - MLT1K LTR MaLR -362 226 161 221 405 66 21 chr11 27647432 27647690 -121135782 - L2 LINE L2 -290 2982 2717 354 344 27 38 chr11 27648712 27648898 -121134574 + MER5B DNA MER1_type 1 173 -5 319 376 44 17 chr11 27649083 27649264 -121134208 - MIR SINE MIR -49 213 28 214 273 23 34 chr11 27649391 27649479 -121133993 - L3 LINE CR1 -217 1360 1274 32 43 0 0 chr11 27650128 27650174 -121133298 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr11 27650282 27650316 -121133156 + AT_rich Low_complexity Low_complexity 1 34 0 307 336 8 25 chr11 27650557 27650676 -121132796 - MLT1I LTR MaLR -15 394 278 25 114 0 0 chr11 27650801 27650924 -121132548 + AT_rich Low_complexity Low_complexity 1 123 0 4547 148 4 25 chr11 27651248 27651435 -121132037 - Tigger2 DNA MER2_type -623 2095 1906 369 0 0 0 chr11 27651435 27651476 -121131996 + (TG)n Simple_repeat Simple_repeat 2 42 0 4547 148 4 25 chr11 27651476 27652059 -121131413 - Tigger2 DNA MER2_type -812 1906 1341 3745 243 128 12 chr11 27652213 27653057 -121130415 - Tigger2 DNA MER2_type -1377 1341 400 204 386 63 0 chr11 27654286 27654413 -121129059 + L2 LINE L2 3138 3272 0 1505 149 34 47 chr11 27654976 27655272 -121128200 - MLT1B LTR MaLR -97 293 2 232 214 18 18 chr11 27655286 27655342 -121128130 - MIR SINE MIR -187 75 20 1790 241 98 51 chr11 27655390 27656034 -121127438 - MER76 LTR ERV -14 674 1 207 360 0 0 chr11 27656918 27656968 -121126504 + MIR SINE MIR 207 256 -6 2358 62 3 3 chr11 27658439 27658731 -121124741 + AluY SINE Alu 5 296 -15 202 325 40 66 chr11 27659284 27659435 -121124037 - MIR SINE MIR -110 152 6 1467 174 32 11 chr11 27659553 27659835 -121123637 + L1MA9 LINE L1 5500 5787 -525 2134 159 56 5 chr11 27659845 27660259 -121123213 + L1MA9 LINE L1 5877 6311 -1 1089 193 43 128 chr11 27660437 27660836 -121122636 - MLT1A1 LTR MaLR 0 365 1 223 299 26 0 chr11 27660926 27661003 -121122469 + MIR SINE MIR 58 136 -126 1915 219 85 43 chr11 27661005 27661535 -121121937 + MLT2B3 LTR ERVL 3 554 0 235 213 28 28 chr11 27661951 27662059 -121121413 + GA-rich Low_complexity Low_complexity 4 111 0 411 241 33 50 chr11 27662485 27662637 -121120835 - MER5A DNA MER1_type -1 177 29 325 147 53 40 chr11 27662837 27662912 -121120560 - MADE1 DNA Mariner 0 80 5 2305 76 10 3 chr11 27663645 27663947 -121119525 + AluSq SINE Alu 1 304 -9 315 335 53 29 chr11 27663949 27664119 -121119353 + MIR SINE MIR 28 201 -61 5816 76 64 5 chr11 27664141 27664921 -121118551 - LTR12 LTR ERV1 0 826 1 196 240 331 0 chr11 27664993 27665114 -121118358 - MIR SINE MIR -82 180 20 1930 114 4 0 chr11 27665150 27665412 -121118060 - AluSx SINE Alu -15 297 35 190 224 52 35 chr11 27667794 27667852 -121115620 - MIR SINE MIR -3 259 201 213 340 82 0 chr11 27668485 27668582 -121114890 - MIR SINE MIR -111 151 47 201 373 59 0 chr11 27669400 27669502 -121113970 - L3 LINE CR1 -18 1559 1452 2399 71 0 3 chr11 27669518 27669815 -121113657 + AluY SINE Alu 1 296 -15 25 0 0 0 chr11 27670631 27670656 -121112816 + AT_rich Low_complexity Low_complexity 1 25 0 259 315 41 6 chr11 27671548 27671710 -121111762 - MIR SINE MIR -17 191 82 24 0 0 0 chr11 27671731 27671755 -121111717 + AT_rich Low_complexity Low_complexity 1 24 0 1567 77 64 4 chr11 27671756 27671990 -121111482 - L1PA11 LINE L1 -10 6164 5917 349 223 93 45 chr11 27672354 27672521 -121110951 - MLT1G LTR MaLR 0 590 357 236 250 0 0 chr11 27672543 27672595 -121110877 - MLT1H1 LTR MaLR -503 52 1 201 289 19 0 chr11 27672758 27672810 -121110662 - MIR SINE MIR -66 142 90 1303 49 12 0 chr11 27673124 27673286 -121110186 + AluY SINE Alu 136 299 -12 180 0 0 0 chr11 27673751 27673771 -121109701 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 297 0 0 0 chr11 27673770 27673803 -121109669 + (TG)n Simple_repeat Simple_repeat 2 34 0 667 159 56 0 chr11 27675283 27675409 -121108063 + L1MA10 LINE L1 6199 6331 -3 209 266 13 51 chr11 27675863 27675942 -121107530 + L2 LINE L2 3235 3310 -3 349 191 96 32 chr11 27676806 27676900 -121106572 - MER94 DNA DNA -34 100 1 356 321 33 27 chr11 27677069 27677253 -121106219 + MIR3 SINE MIR 10 194 -14 417 276 29 53 chr11 27678098 27678307 -121105165 - ERVL LTR ERVL -5278 384 193 921 201 33 16 chr11 27678318 27678502 -121104970 + MLT2D LTR ERVL 228 414 0 * 2744 251 95 20 chr11 27678502 27679409 -121104063 - L1M4 LINE L1 -5552 990 16 3428 173 128 98 chr11 27679805 27680230 -121103242 + L1MC3 LINE L1 6666 7077 -708 283 304 22 0 chr11 27680230 27680322 -121103150 + MLT1F1 LTR MaLR 38 131 -436 3428 173 128 98 chr11 27680322 27680893 -121102579 + L1MC3 LINE L1 7077 7785 0 238 293 104 0 chr11 27681358 27681464 -121102008 + HAL1 LINE L1 1482 1598 -909 388 328 66 22 chr11 27682148 27682533 -121100939 + L1 LINE L1 2125 2544 -3602 1326 278 152 35 chr11 27682693 27683239 -121100233 + MLT2E LTR ERVL 11 620 -8 29 94 0 0 chr11 27683239 27683324 -121100148 + AT_rich Low_complexity Low_complexity 1 85 0 1572 192 36 0 chr11 27683800 27683921 -121099551 + AluJb SINE Alu 1 116 -196 255 61 0 0 chr11 27683921 27683954 -121099518 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1572 192 36 0 chr11 27683954 27684113 -121099359 + AluJb SINE Alu 116 291 -21 234 328 60 45 chr11 27684681 27684815 -121098657 + MIR3 SINE MIR 10 145 -63 7177 44 18 0 chr11 27684835 27685801 -121097671 - L1PA7 LINE L1 -5 6149 5178 456 254 0 33 chr11 27685987 27686109 -121097363 + MER94 DNA DNA 1 118 -16 6586 73 31 1 chr11 27686109 27686980 -121096492 + MER11D LTR ERVK 1 897 0 663 108 0 0 chr11 27687352 27687454 -121096018 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 426 356 25 6 chr11 27688553 27688716 -121094756 - MIR SINE MIR -69 193 28 246 32 0 0 chr11 27689054 27689085 -121094387 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 2247 119 0 6 chr11 27689237 27689548 -121093924 - AluSc SINE Alu 0 309 1 7033 53 11 0 chr11 27690085 27691095 -121092377 + L1PA5 LINE L1 5127 6146 -8 302 287 46 76 chr11 27691543 27691780 -121091692 + MIR SINE MIR 20 249 -13 320 284 52 103 chr11 27693952 27694146 -121089326 + MIR SINE MIR 71 254 -8 199 316 26 128 chr11 27694193 27694310 -121089162 + L2 LINE L2 3137 3241 -31 467 333 31 6 chr11 27694592 27694754 -121088718 - MIR3 SINE MIR -5 203 38 357 24 0 0 chr11 27695189 27695231 -121088241 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1936 113 0 60 chr11 27695233 27695534 -121087938 - AluSq SINE Alu -30 283 1 2096 128 7 0 chr11 27695590 27695879 -121087593 - AluSq SINE Alu -22 291 1 1514 166 135 0 chr11 27696274 27696533 -121086939 - AluJb SINE Alu -15 297 4 2300 39 0 68 chr11 27696679 27696989 -121086483 + AluY SINE Alu 1 289 -22 21 0 0 0 chr11 27697255 27697276 -121086196 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 27748451 27748480 -121034992 + AT_rich Low_complexity Low_complexity 1 29 0 359 316 37 0 chr11 27749091 27749227 -121034245 - MIR SINE MIR -100 162 22 1119 156 120 0 chr11 27749569 27749761 -121033711 + MER4E LTR ERV1 556 770 -9 241 250 0 0 chr11 27749761 27749809 -121033663 + polypyrimidine Low_complexity Low_complexity 3 50 0 4025 245 71 35 chr11 27750109 27750274 -121033198 - L1MD1 LINE L1 -307 5935 5777 225 0 0 0 chr11 27750274 27750299 -121033173 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4025 245 71 35 chr11 27750299 27752170 -121031302 - L1MD1 LINE L1 -465 5777 3796 1555 83 28 5 chr11 27752170 27752386 -121031086 - AluY SINE Alu -3 308 88 4025 245 71 35 chr11 27752386 27752890 -121030582 - L1MD1 LINE L1 -2446 3796 3312 224 331 48 48 chr11 27753237 27753382 -121030090 + MIR SINE MIR 5 149 -113 24 67 0 0 chr11 27753483 27753528 -121029944 + AT_rich Low_complexity Low_complexity 1 45 0 940 149 7 7 chr11 27753528 27753676 -121029796 + AluJb SINE Alu 1 148 -164 523 111 49 5 chr11 27753676 27753887 -121029585 + (TA)n Simple_repeat Simple_repeat 1 220 0 2460 182 12 14 chr11 27753894 27754404 -121029068 - L1MA10 LINE L1 -13 6321 5813 370 248 96 8 chr11 27754612 27754737 -121028735 + L1MB1 LINE L1 5696 5831 -358 188 269 64 64 chr11 27755371 27755449 -121028023 - L2 LINE L2 -825 2489 2412 1062 257 91 18 chr11 27755901 27756286 -121027186 - MLT1C LTR MaLR -52 415 3 748 284 57 3 chr11 27756287 27756622 -121026850 + L1M4 LINE L1 2854 3206 -2940 190 122 20 20 chr11 27757120 27757169 -121026303 + (TA)n Simple_repeat Simple_repeat 1 49 0 180 0 0 0 chr11 27757169 27757189 -121026283 + (CA)n Simple_repeat Simple_repeat 2 21 0 625 150 38 23 chr11 27757604 27757737 -121025735 - L1MA4A LINE L1 -5 6298 6164 1557 123 34 27 chr11 27758078 27758370 -121025102 + L1MA5 LINE L1 6006 6299 -1 338 291 136 38 chr11 27758445 27758761 -121024711 + L1M4c LINE L1 2028 2374 -4010 334 280 27 0 chr11 27758766 27758841 -121024631 - LTR17 LTR ERV1 0 780 704 * 17622 63 4 6 chr11 27758815 27762905 -121020567 - HERV17 LTR ERV1 -1269 7357 1537 2227 68 0 0 chr11 27763098 27763377 -121020095 - HERV17 LTR ERV1 -6674 1952 1674 6251 131 19 0 chr11 27763452 27764351 -121019121 + THE1A-int LTR MaLR 665 1580 0 1894 152 17 20 chr11 27764351 27764707 -121018765 + THE1A LTR MaLR 1 355 0 3155 278 98 10 chr11 27764718 27766420 -121017052 + L1M4c LINE L1 2606 4457 -1925 43076 42 3 2 chr11 27766771 27772905 -121010567 - L1PA3 LINE L1 0 6155 13 308 385 18 35 chr11 27772907 27773076 -121010396 - MIR SINE MIR -80 182 17 1626 208 85 105 chr11 27773574 27774126 -121009346 - MER67A LTR ERV1 -2 541 1 304 309 20 33 chr11 27774449 27774601 -121008871 + MIR SINE MIR 76 225 -37 1803 158 10 3 chr11 27774837 27775128 -121008344 - AluSx SINE Alu -19 293 1 25 0 0 0 chr11 27775617 27775642 -121007830 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chr11 27776665 27776698 -121006774 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 257 305 37 68 chr11 27776709 27776899 -121006573 - L2 LINE L2 -32 3281 3098 310 332 115 25 chr11 27777284 27777648 -121005824 + L2 LINE L2 2915 3311 -2 333 330 165 9 chr11 27777801 27778025 -121005447 + MIR SINE MIR 1 259 -3 597 166 222 0 chr11 27779215 27779420 -121004052 + L1M4 LINE L1 5224 5470 -708 4878 150 19 33 chr11 27779970 27780888 -121002584 + L1PA16 LINE L1 5260 6164 -2 326 268 32 49 chr11 27781511 27781634 -121001838 - L1MC4 LINE L1 0 8042 7922 228 81 0 27 chr11 27781794 27781831 -121001641 - Charlie3 DNA MER1_type -2674 36 1 884 136 7 19 chr11 27781831 27781986 -121001486 - LTR8A LTR ERV1 -565 162 10 328 241 72 0 chr11 27781987 27782070 -121001402 + L1MC4 LINE L1 6615 6703 -1339 1418 256 105 58 chr11 27782076 27782148 -121001324 - L1MC4 LINE L1 -300 7742 7675 2443 43 3 30 chr11 27782148 27782447 -121001025 - AluY SINE Alu -20 291 1 1418 256 105 58 chr11 27782447 27783253 -121000219 - L1MC4 LINE L1 -367 7675 6823 1698 240 112 53 chr11 27783259 27783327 -121000145 + MER50 LTR ERV1 14 77 -657 2286 72 7 10 chr11 27783327 27783633 -120999839 + AluY SINE Alu 1 305 -6 1698 240 112 53 chr11 27783633 27784227 -120999245 + MER50 LTR ERV1 77 715 -19 1500 251 82 95 chr11 27784256 27785458 -120998014 - L1MC4a LINE L1 -1067 6741 5555 3273 125 17 2 chr11 27785494 27786016 -120997456 + MER51C LTR ERV1 1 515 -125 2310 113 0 6 chr11 27787151 27787462 -120996010 - AluSx SINE Alu -3 309 1 2589 174 24 2 chr11 27787674 27788129 -120995343 + LTR32 LTR ERVL 7 471 0 738 183 0 0 chr11 27788179 27788305 -120995167 - FLAM_C SINE Alu -10 133 8 851 247 13 26 chr11 27788450 27788677 -120994795 + MER58A DNA MER1_type 1 224 0 242 145 65 32 chr11 27788912 27788974 -120994498 - MLT1F LTR MaLR -212 330 267 358 264 159 50 chr11 27790303 27790462 -120993010 - MIR SINE MIR -15 247 64 1626 181 144 5 chr11 27790462 27790838 -120992634 + MSTA LTR MaLR 1 428 0 358 264 159 50 chr11 27790838 27790860 -120992612 - MIR SINE MIR -198 64 46 322 353 33 20 chr11 27791198 27791348 -120992124 + MIR SINE MIR 41 192 -70 200 229 243 0 chr11 27792554 27792624 -120990848 + MIR SINE MIR 68 154 -108 559 302 40 24 chr11 27792663 27792915 -120990557 + MIR SINE MIR 2 257 -5 199 258 16 16 chr11 27792947 27793009 -120990463 + MIR SINE MIR 201 262 0 2090 136 3 7 chr11 27793247 27793557 -120989915 + AluSx SINE Alu 1 309 -3 436 211 100 22 chr11 27793722 27793902 -120989570 - LTR37A LTR ERV1 -9 417 224 1881 147 91 90 chr11 27793972 27794583 -120988889 + MER4D LTR ERV1 1 725 -54 1585 152 103 74 chr11 27794806 27795464 -120988008 + MER4D LTR ERV1 1 770 -9 254 293 120 3 chr11 27795643 27795759 -120987713 - MIR SINE MIR -65 143 28 773 226 75 5 chr11 27795764 27795963 -120987509 + MER20 DNA MER1_type 2 214 -5 639 253 96 92 chr11 27797024 27797316 -120986156 - L2 LINE L2 -619 2695 2403 21 0 0 0 chr11 27798709 27798730 -120984742 + AT_rich Low_complexity Low_complexity 1 21 0 631 316 128 44 chr11 27798929 27799474 -120983998 + MLT1G1 LTR MaLR 3 593 -2 22 0 0 0 chr11 27799831 27799853 -120983619 + AT_rich Low_complexity Low_complexity 1 22 0 511 315 86 0 chr11 27801795 27801992 -120981480 + L2 LINE L2 2087 2300 -1014 358 307 26 0 chr11 27802001 27802115 -120981357 + MLT2E LTR ERVL 10 126 -502 3502 215 38 4 chr11 27802156 27802886 -120980586 + Tigger7 DNA MER2_type 13 767 -1720 927 169 55 0 chr11 27802889 27803072 -120980400 + Tigger7 DNA MER2_type 2118 2310 -177 246 65 0 194 chr11 27803074 27803105 -120980367 - MADE1 DNA Mariner -30 50 35 3143 91 31 0 chr11 27803105 27803556 -120979916 - L1PA8 LINE L1 -1 6171 5707 246 65 0 194 chr11 27803556 27803586 -120979886 - MADE1 DNA Mariner -45 35 1 258 246 212 17 chr11 27803601 27803719 -120979753 + L2 LINE L2 3172 3312 -1 279 0 0 0 chr11 27804655 27804686 -120978786 + (T)n Simple_repeat Simple_repeat 1 31 0 375 43 123 7 chr11 27805392 27805530 -120977942 + (TA)n Simple_repeat Simple_repeat 1 154 0 2151 122 0 0 chr11 27805532 27805819 -120977653 - AluSg SINE Alu -23 287 1 21 0 0 0 chr11 27806236 27806257 -120977215 + AT_rich Low_complexity Low_complexity 1 21 0 3840 146 10 60 chr11 27806336 27807064 -120976408 - LTR8 LTR ERV1 0 691 1 2243 95 0 46 chr11 27807106 27807431 -120976041 + AluSg SINE Alu 1 310 0 5195 147 18 16 chr11 27808249 27809150 -120974322 + MER4D LTR ERV1 1 903 0 774 201 0 0 chr11 27809427 27809566 -120973906 - Tigger1 DNA MER2_type 0 2418 2280 278 122 0 0 chr11 27809628 27809669 -120973803 + MSTA LTR MaLR 386 426 -2 1556 158 61 16 chr11 27809673 27809984 -120973488 - Tigger1 DNA MER2_type -105 2313 1989 1908 166 102 5 chr11 27810003 27810377 -120973095 + MSTA LTR MaLR 19 428 0 9338 149 14 27 chr11 27810378 27811855 -120971617 - Tigger1 DNA MER2_type -463 1955 500 1476 219 3 0 chr11 27811855 27812138 -120971334 - AluJo SINE Alu -22 290 7 9338 149 14 27 chr11 27812138 27812281 -120971191 - Tigger1 DNA MER2_type -1918 500 357 1908 304 64 50 chr11 27812476 27813480 -120969992 - L2 LINE L2 -1 3312 2292 1202 289 68 36 chr11 27813480 27814116 -120969356 - MLT2F LTR ERVL -3 660 5 1908 304 64 50 chr11 27814116 27814428 -120969044 - L2 LINE L2 -1021 2292 1986 22 35 0 0 chr11 27815412 27815441 -120968031 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr11 27815503 27815527 -120967945 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 184 368 108 11 chr11 27818683 27818868 -120964604 + MIR SINE MIR 60 262 0 617 297 33 26 chr11 27819191 27819494 -120963978 + L1PA12 LINE L1 1 305 -7276 577 185 23 15 chr11 27820164 27820294 -120963178 + Charlie3 DNA MER1_type 2547 2677 -33 1134 169 169 43 chr11 27820565 27820866 -120962606 - MER2 DNA MER2_type 0 345 7 29 0 0 0 chr11 27821499 27821528 -120961944 + AT_rich Low_complexity Low_complexity 1 29 0 187 349 64 37 chr11 27822152 27822261 -120961211 + L2 LINE L2 3139 3250 -22 902 281 138 17 chr11 27822663 27823019 -120960453 - LTR40a LTR ERVL -119 400 2 34 0 0 0 chr11 27823693 27823727 -120959745 + AT_rich Low_complexity Low_complexity 1 34 0 200 258 15 76 chr11 27825010 27825076 -120958396 + L2 LINE L2 3238 3299 -14 217 313 0 73 chr11 27825680 27825776 -120957696 + MIR SINE MIR 28 116 -146 488 366 63 12 chr11 27825780 27826034 -120957438 - L2 LINE L2 -6 3266 3000 195 406 9 19 chr11 27826805 27826911 -120956561 + MIR SINE MIR 22 126 -136 256 223 43 64 chr11 27827376 27827470 -120956002 - L2 LINE L2 0 3313 3222 949 248 10 19 chr11 27827567 27827934 -120955538 + MLT1D LTR MaLR 1 319 -71 4027 127 27 53 chr11 27827934 27828250 -120955222 + L1PB4 LINE L1 5344 5667 -489 660 202 8 0 chr11 27828250 27828369 -120955103 + FLAM_C SINE Alu 1 120 -13 4027 127 27 53 chr11 27828369 27828382 -120955090 + L1PB4 LINE L1 5667 5679 -477 1858 131 45 3 chr11 27828382 27828673 -120954799 - AluSg SINE Alu -3 307 5 4027 127 27 53 chr11 27828673 27829169 -120954303 + L1PB4 LINE L1 5679 6154 -2 288 194 30 0 chr11 27829171 27829238 -120954234 + MLT1E2 LTR MaLR 558 626 0 282 212 79 30 chr11 27829245 27829410 -120954062 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 342 210 118 8 chr11 27829489 27829608 -120953864 + L1MA4 LINE L1 6166 6297 -3 * 2815 208 60 32 chr11 27829602 27830342 -120953130 + L1MD1 LINE L1 5475 6234 -8 234 337 50 50 chr11 27830494 27830675 -120952797 + MIR3 SINE MIR 19 199 -9 207 167 0 0 chr11 27831674 27831710 -120951762 + CT-rich Low_complexity Low_complexity 2 37 0 1165 197 55 93 chr11 27831767 27832188 -120951284 - LTR7 LTR ERV1 -45 405 1 304 342 26 0 chr11 27832191 27832305 -120951167 + L2 LINE L2 2385 2501 -813 5057 30 0 0 chr11 27832314 27832907 -120950565 - L1PA3 LINE L1 -5 6150 5558 1253 317 80 43 chr11 27833601 27834165 -120949307 + MER45C DNA AcHobo 27 618 -335 1233 178 97 39 chr11 27834311 27834620 -120948852 + MER45B DNA AcHobo 714 1040 0 25 0 0 0 chr11 27834800 27834825 -120948647 + AT_rich Low_complexity Low_complexity 1 25 0 413 371 70 41 chr11 27835348 27835838 -120947634 - L2 LINE L2 -13 3259 2752 225 297 22 55 chr11 27835818 27835909 -120947563 + MER5A DNA MER1_type 96 183 -6 * 3484 176 33 20 chr11 27836264 27837215 -120946257 - L1MA9 LINE L1 -353 5959 4983 2372 67 6 10 chr11 27837215 27837527 -120945945 - AluY SINE Alu 0 311 1 3484 176 33 20 chr11 27837527 27837738 -120945734 - L1MA9 LINE L1 -1329 4983 4776 1798 161 26 9 chr11 27837744 27838086 -120945386 + L1MA9 LINE L1 5965 6312 0 942 63 79 0 chr11 27838949 27839076 -120944396 - MER85 DNA T2_type -2 137 1 409 298 172 5 chr11 27839719 27839917 -120943555 - MIR SINE MIR 0 262 32 560 167 0 0 chr11 27840395 27840491 -120942981 - L1MB3 LINE L1 -14 6169 6074 416 291 0 0 chr11 27840547 27840664 -120942808 - L1ME3A LINE L1 -26 6144 6028 301 312 50 18 chr11 27841833 27841959 -120941513 + MIR SINE MIR 19 143 -65 227 331 185 16 chr11 27842192 27842376 -120941096 - MIR SINE MIR 0 262 48 199 325 38 25 chr11 27842555 27842635 -120940837 - MIR SINE MIR -64 144 64 609 264 93 16 chr11 27842642 27842824 -120940648 - MER63A DNA MER1_type -9 201 6 594 233 0 0 chr11 27842940 27843073 -120940399 - L1MB1 LINE L1 -7 6161 6029 1346 226 42 0 chr11 27843476 27843763 -120939709 + MER58B DNA MER1_type 42 340 -1 245 299 28 56 chr11 27843929 27844036 -120939436 + MIR SINE MIR 19 122 -140 1442 234 50 39 chr11 27844168 27844531 -120938941 - LTR39 LTR ERV1 0 783 417 1878 204 41 22 chr11 27844811 27845539 -120937933 - LTR39 LTR ERV1 0 783 1 1335 42 0 0 chr11 27846173 27846340 -120937132 + L1PA4 LINE L1 5989 6155 0 2399 170 105 1 chr11 27846608 27847064 -120936408 - MER61D LTR ERV1 -1 500 1 203 282 84 28 chr11 27847768 27847839 -120935633 + L2 LINE L2 3186 3260 -12 1048 144 0 28 chr11 27848350 27848530 -120934942 - AluSx SINE Alu -137 175 1 31 88 0 0 chr11 27848906 27848986 -120934486 + AT_rich Low_complexity Low_complexity 1 80 0 230 246 98 0 chr11 27849347 27849408 -120934064 - MIR3 SINE MIR -38 170 104 27 29 0 0 chr11 27849750 27849784 -120933688 + AT_rich Low_complexity Low_complexity 1 34 0 283 272 117 19 chr11 27850778 27850881 -120932591 + MIR SINE MIR 116 228 -34 715 288 233 14 chr11 27851395 27851812 -120931660 + L2 LINE L2 2352 2859 -455 222 264 33 0 chr11 27851868 27851959 -120931513 + (TA)n Simple_repeat Simple_repeat 1 94 0 665 186 9 0 chr11 27852389 27852502 -120930970 - MLT1A1 LTR MaLR -251 114 1 485 287 81 34 chr11 27853855 27854064 -120929408 - MIR SINE MIR -13 249 31 221 278 99 73 chr11 27856443 27856566 -120926906 - MIR SINE MIR 0 262 131 1811 174 0 7 chr11 27856566 27856854 -120926618 - AluJb SINE Alu -22 290 5 221 278 99 73 chr11 27856854 27856921 -120926551 - MIR SINE MIR -131 131 67 325 346 20 0 chr11 27857367 27857520 -120925952 - MARNA DNA Mariner -203 383 228 1344 239 107 67 chr11 27857685 27858267 -120925205 - MER21B LTR ERV1 -133 730 126 518 283 112 19 chr11 27858984 27859189 -120924283 + MIR SINE MIR 9 232 -30 1018 235 153 31 chr11 27859377 27859730 -120923742 - MSTD LTR MaLR 0 396 1 2937 91 31 0 chr11 27860003 27860421 -120923051 + MER57B LTR ERV1 1 431 -3 668 181 24 94 chr11 27860640 27861104 -120922368 - MER4C LTR ERV1 -2 695 181 2156 103 0 0 chr11 27861104 27861419 -120922053 - AluSg SINE Alu 0 315 1 668 181 24 94 chr11 27861419 27861588 -120921884 - MER4C LTR ERV1 -516 181 2 678 259 139 5 chr11 27863058 27863274 -120920198 - MIR SINE MIR -16 246 2 187 279 118 93 chr11 27863301 27863462 -120920010 + MIR SINE MIR 31 195 -67 1426 213 60 24 chr11 27863668 27864094 -120919378 - MER89 LTR ERV1 0 559 19 228 292 67 50 chr11 27865567 27865687 -120917785 - MIR SINE MIR -50 212 91 315 352 115 16 chr11 27865879 27866061 -120917411 + MIR SINE MIR 29 228 -34 338 162 59 0 chr11 27866549 27866617 -120916855 - LTR16C LTR ERVL 0 491 420 9117 188 43 12 chr11 27867014 27869209 -120914263 + L1MA9 LINE L1 2140 4733 -1756 444 37 0 0 chr11 27869209 27869263 -120914209 + (CA)n Simple_repeat Simple_repeat 1 54 0 9117 188 43 12 chr11 27869263 27870309 -120913163 + L1MA9 LINE L1 4733 5746 -743 577 92 78 6 chr11 27870417 27870745 -120912727 + (TA)n Simple_repeat Simple_repeat 1 351 0 23 68 0 0 chr11 27870751 27870795 -120912677 + AT_rich Low_complexity Low_complexity 1 44 0 498 86 21 81 chr11 27870795 27870981 -120912491 + (TATAA)n Simple_repeat Simple_repeat 1 175 0 202 88 0 88 chr11 27870986 27871043 -120912429 + (TTATA)n Simple_repeat Simple_repeat 1 52 0 279 305 85 0 chr11 27871189 27871330 -120912142 + L1MB8 LINE L1 4067 4219 -1927 * 2462 242 15 5 chr11 27871324 27871920 -120911552 + L1MB8 LINE L1 5489 6090 -88 1561 165 59 14 chr11 27873061 27873419 -120910053 + L1MA9 LINE L1 6175 6548 0 24 0 0 0 chr11 27874730 27874754 -120908718 + AT_rich Low_complexity Low_complexity 1 24 0 2297 89 6 10 chr11 27874943 27875256 -120908216 + AluSp SINE Alu 1 312 -1 580 344 51 42 chr11 27875319 27875874 -120907598 - L2 LINE L2 0 3313 2742 198 220 237 0 chr11 27877185 27877244 -120906228 - L2 LINE L2 -1 3271 3199 219 69 0 0 chr11 27879006 27879035 -120904437 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr11 27879424 27879466 -120904006 + AT_rich Low_complexity Low_complexity 1 42 0 278 392 40 0 chr11 27879570 27879695 -120903777 + MER5B DNA MER1_type 1 130 -48 1958 42 0 0 chr11 27879701 27879942 -120903530 - L1PA4 LINE L1 -3 6152 5912 275 248 29 86 chr11 27880762 27880867 -120902605 - L2 LINE L2 0 3313 3215 1871 160 152 0 chr11 27880969 27881343 -120902129 + LTR47A LTR ERVL 3 433 -19 459 223 71 0 chr11 27881704 27881816 -120901656 + L2 LINE L2 2361 2480 -834 308 320 73 27 chr11 27881825 27881975 -120901497 + L2 LINE L2 3156 3312 -1 2106 103 0 0 chr11 27882021 27882322 -120901150 + AluSx SINE Alu 1 301 0 219 69 0 0 chr11 27882663 27882692 -120900780 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 361 262 98 25 chr11 27882988 27883110 -120900362 + MER5A DNA MER1_type 56 186 -3 197 65 32 0 chr11 27884521 27884552 -120898920 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 27884632 27884659 -120898813 + AT_rich Low_complexity Low_complexity 1 27 0 238 333 0 0 chr11 27885016 27885079 -120898393 - MIR SINE MIR 0 262 200 1169 216 7 29 chr11 27885765 27886043 -120897429 + MLT2D LTR ERVL 1 272 -142 264 122 0 0 chr11 27887010 27887051 -120896421 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 227 307 102 30 chr11 27887126 27887292 -120896180 - MIR3 SINE MIR -26 182 5 * 480 296 129 111 chr11 27887273 27887799 -120895673 + L2 LINE L2 1132 1647 -1667 1376 193 3 56 chr11 27887799 27888105 -120895367 + AluJb SINE Alu 1 290 -22 480 296 129 111 chr11 27888105 27888144 -120895328 + L2 LINE L2 1647 1684 -1630 1666 169 43 30 chr11 27888144 27888512 -120894960 + THE1C LTR MaLR 1 373 -2 480 296 129 111 chr11 27888512 27888852 -120894620 + L2 LINE L2 1684 2054 -1260 24 32 0 0 chr11 27889481 27889512 -120893960 + AT_rich Low_complexity Low_complexity 1 31 0 672 152 190 0 chr11 27889603 27889761 -120893711 + MER53 DNA DNA 1 188 -1 226 316 71 7 chr11 27890185 27890301 -120893171 - L1MA10 LINE L1 0 6334 6219 1325 264 20 60 chr11 27890301 27890518 -120892954 - L1ME1 LINE L1 -117 6049 5825 306 0 0 0 chr11 27890518 27890552 -120892920 + (CA)n Simple_repeat Simple_repeat 1 34 0 1325 264 20 60 chr11 27890552 27890883 -120892589 - L1ME1 LINE L1 -341 5825 5523 1209 254 109 26 chr11 27890883 27891360 -120892112 + MER20B DNA MER1_type 192 713 -70 1543 236 113 19 chr11 27891360 27891821 -120891651 + MLT1D LTR MaLR 1 504 -1 1209 254 109 26 chr11 27891821 27891839 -120891633 + MER20B DNA MER1_type 713 728 -55 312 364 6 51 chr11 27892181 27892357 -120891115 - MIR SINE MIR -28 180 9 324 211 0 0 chr11 27892657 27892733 -120890739 + CT-rich Low_complexity Low_complexity 2 77 0 183 100 0 0 chr11 27894248 27894278 -120889194 + (TA)n Simple_repeat Simple_repeat 1 30 0 197 341 30 59 chr11 27895597 27895732 -120887740 + MIR SINE MIR 14 144 -118 4004 147 10 49 chr11 27895738 27896457 -120887015 - LTR8 LTR ERV1 0 691 1 2654 132 91 86 chr11 27896485 27896503 -120886969 + MER4B LTR ERV1 1 17 -593 180 0 0 0 chr11 27896503 27896523 -120886949 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2654 132 91 86 chr11 27896523 27897111 -120886361 + MER4B LTR ERV1 17 610 0 26 74 0 0 chr11 27897725 27897779 -120885693 + AT_rich Low_complexity Low_complexity 1 54 0 198 331 79 24 chr11 27899114 27899241 -120884231 - MIR SINE MIR -56 206 73 21 36 0 0 chr11 27899269 27899297 -120884175 + AT_rich Low_complexity Low_complexity 1 28 0 213 319 0 66 chr11 27899478 27899569 -120883903 + L2 LINE L2 3182 3266 -6 286 328 49 41 chr11 27900836 27900958 -120882514 + MIR SINE MIR 19 141 -67 3703 191 27 18 chr11 27901418 27902241 -120881231 - L1MA8 LINE L1 -191 6100 5271 23 78 0 0 chr11 27902307 27902358 -120881114 + AT_rich Low_complexity Low_complexity 1 51 0 5848 77 0 10 chr11 27902440 27903228 -120880244 + LTR17 LTR ERV1 1 780 0 304 247 169 26 chr11 27903228 27903382 -120880090 + MIR SINE MIR 67 242 -20 21 71 0 0 chr11 27903575 27903617 -120879855 + AT_rich Low_complexity Low_complexity 1 42 0 747 209 0 7 chr11 27904495 27904648 -120878824 + MER67D LTR ERV1 4 155 -359 1821 131 0 0 chr11 27904648 27904915 -120878557 - AluSx SINE Alu -45 267 1 683 273 137 51 chr11 27904920 27905097 -120878375 - L1M4 LINE L1 -2978 3168 3008 1877 115 77 16 chr11 27905097 27905420 -120878052 - MER61A LTR ERV1 0 343 1 683 273 137 51 chr11 27905420 27905542 -120877930 - L1M4 LINE L1 -3138 3008 2898 635 183 51 6 chr11 27905542 27905717 -120877755 - L1MA7 LINE L1 -1 6290 6108 683 273 137 51 chr11 27905717 27906042 -120877430 - L1M4 LINE L1 -3248 2898 2489 431 200 0 53 chr11 27906343 27906438 -120877034 - AluJb SINE Alu -18 294 205 1283 57 0 0 chr11 27906474 27906632 -120876840 + AluSp/q SINE Alu 156 313 0 716 138 8 16 chr11 27906636 27906759 -120876713 - FLAM_C SINE Alu -21 122 1 211 341 65 32 chr11 27906967 27907090 -120876382 + L2 LINE L2 3164 3290 -23 38 68 0 0 chr11 27907815 27907888 -120875584 + AT_rich Low_complexity Low_complexity 1 73 0 26 0 0 0 chr11 27908770 27908796 -120874676 + AT_rich Low_complexity Low_complexity 1 26 0 380 175 25 0 chr11 27909081 27909241 -120874231 + (TA)n Simple_repeat Simple_repeat 1 164 0 24 53 0 0 chr11 27909245 27909283 -120874189 + AT_rich Low_complexity Low_complexity 1 38 0 285 208 0 14 chr11 27909295 27909367 -120874105 + L1 LINE L1 3027 3097 -3049 437 95 16 0 chr11 27909383 27909446 -120874026 - L1P4 LINE L1 -377 5789 5726 21 71 0 0 chr11 27909446 27909488 -120873984 + AT_rich Low_complexity Low_complexity 1 42 0 248 183 17 0 chr11 27909730 27909790 -120873682 + (TA)n Simple_repeat Simple_repeat 2 62 0 1686 199 94 5 chr11 27909993 27910386 -120873086 - MSTA LTR MaLR 0 428 1 272 355 44 14 chr11 27910671 27910865 -120872607 - MIR SINE MIR -51 211 13 7113 38 7 0 chr11 27911933 27912799 -120870673 - L1PA4 LINE L1 -11 6144 5273 269 156 0 0 chr11 27912926 27912971 -120870501 - MLT2A2 LTR ERVL -10 443 399 332 167 14 0 chr11 27912971 27913043 -120870429 + (TA)n Simple_repeat Simple_repeat 1 73 0 435 139 14 0 chr11 27913052 27913124 -120870348 + MLT2A2 LTR ERVL 341 413 -40 212 184 0 0 chr11 27913168 27913206 -120870266 + (TA)n Simple_repeat Simple_repeat 1 38 0 410 123 15 0 chr11 27913206 27913271 -120870201 + MLT2A2 LTR ERVL 341 406 -47 1838 233 24 26 chr11 27913291 27913746 -120869726 - MLT2B3 LTR ERVL -100 454 1 261 316 9 70 chr11 27913854 27913968 -120869504 + L2 LINE L2 3156 3262 -10 23 0 0 0 chr11 27914582 27914605 -120868867 + AT_rich Low_complexity Low_complexity 1 23 0 846 154 15 0 chr11 27916158 27916294 -120867178 + MLT2B2 LTR ERVL 5 142 -373 2218 89 3 13 chr11 27916562 27916865 -120866607 - AluSp SINE Alu -12 301 2 24 0 0 0 chr11 27917394 27917418 -120866054 + AT_rich Low_complexity Low_complexity 1 24 0 1953 157 15 15 chr11 27917777 27918114 -120865358 - MER1B DNA MER1_type 0 337 1 306 0 0 0 chr11 27918306 27918340 -120865132 + (ATG)n Simple_repeat Simple_repeat 2 35 0 499 47 0 0 chr11 27918594 27918658 -120864814 - L1PA16 LINE L1 -6 6160 6097 10987 215 25 4 chr11 27918659 27921173 -120862299 - L1PA16 LINE L1 -106 6060 3459 211 70 23 23 chr11 27921173 27921216 -120862256 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 10987 215 25 4 chr11 27921216 27922181 -120861291 - L1PA16 LINE L1 -2707 3459 2516 1257 86 0 0 chr11 27922282 27922444 -120861028 + AluY SINE Alu 137 298 -13 318 276 86 43 chr11 27922660 27922776 -120860696 - L2 LINE L2 -9 3263 3143 698 160 88 0 chr11 27922878 27923003 -120860469 + AluJb SINE Alu 1 136 -176 2550 55 0 0 chr11 27923003 27923311 -120860161 + AluY SINE Alu 1 308 -3 345 303 99 18 chr11 27923434 27923655 -120859817 - L1ME LINE L1 -616 5505 5267 261 115 173 0 chr11 27923877 27923929 -120859543 + HsTC2 DNA Tc2 3 63 -1835 737 238 72 38 chr11 27924047 27924432 -120859040 + MLT1J2 LTR MaLR 31 445 -1 1029 161 0 0 chr11 27924728 27924883 -120858589 - AluSg/x SINE Alu -23 287 133 273 119 0 0 chr11 27924883 27924925 -120858547 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1780 157 68 106 chr11 27925042 27925133 -120858339 - LTR8 LTR ERV1 -167 524 431 2144 129 3 0 chr11 27925133 27925436 -120858036 - AluSx SINE Alu -5 307 4 1780 157 68 106 chr11 27925436 27925873 -120857599 - LTR8 LTR ERV1 -260 431 16 2383 65 7 0 chr11 27925881 27926173 -120857299 - AluSq SINE Alu -19 294 1 495 314 43 0 chr11 27926178 27926363 -120857109 + L2 LINE L2 2550 2742 -572 5811 254 32 25 chr11 27926557 27928668 -120854804 - L1PA12 LINE L1 -2314 5270 3177 370 164 0 0 chr11 27928668 27928729 -120854743 + AluS SINE Alu 1 61 -247 1987 121 32 0 chr11 27928672 27928952 -120854520 + AluSc SINE Alu 5 293 -16 5811 254 32 25 chr11 27928729 27928973 -120854499 - L1PA12 LINE L1 -4407 3177 3117 300 91 0 0 chr11 27928973 27929017 -120854455 + (TG)n Simple_repeat Simple_repeat 1 44 0 5811 254 32 25 chr11 27929017 27929437 -120854035 - L1PA12 LINE L1 -4467 3117 2702 1012 313 38 58 chr11 27929435 27930481 -120852991 - L1PA12 LINE L1 -5502 2079 268 * 6214 130 34 49 chr11 27930485 27931648 -120851824 + MER52C LTR ERV1 1 1146 -132 2101 124 3 0 chr11 27932133 27932431 -120851041 - AluSx SINE Alu -13 299 1 1814 155 14 0 chr11 27934182 27934489 -120848983 + AluSx SINE Alu 1 311 0 231 364 0 0 chr11 27934814 27934891 -120848581 - MIR SINE MIR -111 151 75 787 257 39 34 chr11 27934891 27935376 -120848096 - MLT1F1 LTR MaLR -8 559 9 352 245 86 0 chr11 27936112 27936251 -120847221 + MER113 DNA MER1_type? 1 151 -370 238 359 0 31 chr11 27936300 27936428 -120847044 - L2 LINE L2 -538 2776 2653 254 373 77 12 chr11 27938284 27938453 -120845019 - MIR3 SINE MIR -5 203 24 1747 166 49 30 chr11 27938596 27938964 -120844508 - THE1C LTR MaLR 0 375 1 981 264 111 18 chr11 27939479 27939813 -120843659 - MER92C LTR ERV1 -2 552 188 1198 249 40 71 chr11 27939978 27940499 -120842973 - MLT1D LTR MaLR 0 505 1 192 294 59 0 chr11 27940512 27940563 -120842909 - MIR SINE MIR -162 100 47 202 331 99 16 chr11 27940619 27940740 -120842732 - MIR SINE MIR -5 257 127 350 349 20 7 chr11 27942305 27942457 -120841015 - MIR SINE MIR -70 192 39 2043 139 73 14 chr11 27942460 27942804 -120840668 - THE1B LTR MaLR 0 364 1 2296 146 3 3 chr11 27943142 27943511 -120839961 + MLT1B LTR MaLR 21 389 -1 246 221 205 63 chr11 27943544 27943671 -120839801 - L1ME4a LINE L1 -5 6116 5972 420 319 146 29 chr11 27944021 27944472 -120839000 - L1ME4a LINE L1 -85 6036 5533 319 328 263 21 chr11 27947185 27947618 -120835854 + L2 LINE L2 2439 2976 -338 1638 240 25 8 chr11 27948954 27949312 -120834160 - MLT1A1 LTR MaLR -1 364 1 1014 284 31 92 chr11 27950041 27950647 -120832825 - MLT1G LTR MaLR -15 575 7 1422 129 10 90 chr11 27950858 27950914 -120832558 + L1PA16 LINE L1 5881 5940 -226 2306 112 0 6 chr11 27950914 27951227 -120832245 + AluSx SINE Alu 1 311 -1 1422 129 10 90 chr11 27951227 27951480 -120831992 + L1PA16 LINE L1 5940 6165 -1 2123 132 48 28 chr11 27951918 27952275 -120831197 + THE1B LTR MaLR 1 364 0 11193 99 13 25 chr11 27952275 27953867 -120829605 + THE1B-int LTR MaLR 1 1573 -7 2121 121 48 31 chr11 27953875 27954231 -120829241 + THE1B LTR MaLR 3 364 0 728 323 47 75 chr11 27954883 27955480 -120827992 - MLT1G LTR MaLR 0 590 11 21 0 0 0 chr11 27955654 27955675 -120827797 + AT_rich Low_complexity Low_complexity 1 21 0 1475 295 77 22 chr11 27956094 27956602 -120826870 - MLT2E LTR ERVL -82 546 11 23 0 0 0 chr11 27956729 27956752 -120826720 + AT_rich Low_complexity Low_complexity 1 23 0 39 50 0 0 chr11 27957392 27957452 -120826020 + AT_rich Low_complexity Low_complexity 1 60 0 2059 116 0 20 chr11 27957455 27957748 -120825724 - AluSx SINE Alu -21 291 5 24 0 0 0 chr11 27957909 27957933 -120825539 + AT_rich Low_complexity Low_complexity 1 24 0 191 380 38 0 chr11 27958008 27958087 -120825385 + MIR SINE MIR 158 239 -23 31 26 0 0 chr11 27958722 27958760 -120824712 + AT_rich Low_complexity Low_complexity 1 38 0 2136 214 49 44 chr11 27959075 27959573 -120823899 - L1MB7 LINE L1 -200 5984 5481 351 0 0 0 chr11 27959573 27959612 -120823860 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2136 214 49 44 chr11 27959612 27959767 -120823705 - L1MB7 LINE L1 -703 5481 5328 29 28 0 0 chr11 27959767 27959803 -120823669 + AT_rich Low_complexity Low_complexity 1 36 0 5588 148 37 11 chr11 27959803 27960980 -120822492 - L1PA15 LINE L1 -5 6160 4962 3491 235 20 5 chr11 27961041 27961885 -120821587 + L1P LINE L1 4084 4940 -1206 2972 127 16 14 chr11 27961897 27962270 -120821202 - L1PB3 LINE L1 0 6154 5778 294 106 0 0 chr11 27962270 27962317 -120821155 + (CA)n Simple_repeat Simple_repeat 2 48 0 2972 127 16 14 chr11 27962317 27962438 -120821034 - L1PB3 LINE L1 -376 5778 5659 368 282 78 33 chr11 27962438 27962683 -120820789 - L1MEc LINE L1 -3686 2529 2274 531 331 116 17 chr11 27962757 27963282 -120820190 - L1MEc LINE L1 -4131 2265 1689 2007 282 71 15 chr11 27963318 27964244 -120819228 + L1M4 LINE L1 3400 4377 -1769 22 0 0 0 chr11 27965417 27965439 -120818033 + AT_rich Low_complexity Low_complexity 1 22 0 184 370 12 0 chr11 27965777 27965858 -120817614 - L2 LINE L2 -5 3308 3227 221 119 24 0 chr11 27966453 27966495 -120816977 + (TG)n Simple_repeat Simple_repeat 2 44 0 6051 160 11 21 chr11 27967458 27969361 -120814111 - L1PA13 LINE L1 -15 6148 4163 * 7875 176 32 25 chr11 27969359 27970026 -120813446 + L1P LINE L1 2483 3144 -3002 441 0 0 0 chr11 27970026 27970075 -120813397 + (CA)n Simple_repeat Simple_repeat 2 50 0 7875 176 32 25 chr11 27970075 27971067 -120812405 + L1P LINE L1 3144 4154 -1992 1103 194 54 4 chr11 27971247 27971489 -120811983 - MLT1A1-int LTR MaLR -1481 254 1 1198 216 109 41 chr11 27971493 27971831 -120811641 - MLT1A1 LTR MaLR -4 361 1 1425 176 21 58 chr11 27971838 27972168 -120811304 + L1MB1 LINE L1 5844 6161 -7 208 256 0 0 chr11 27972619 27972662 -120810810 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 252 244 23 0 chr11 27972664 27972750 -120810722 + L1MC4 LINE L1 6616 6703 -1339 226 282 24 0 chr11 27972722 27972807 -120810665 - L1MC4 LINE L1 -1339 6703 6617 * 327 104 0 0 chr11 27972810 27972858 -120810614 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 272 261 0 0 chr11 27972861 27972949 -120810523 + L1MC4 LINE L1 6615 6702 -1340 332 232 10 0 chr11 27972951 27973050 -120810422 + (TA)n Simple_repeat Simple_repeat 1 100 0 247 113 0 48 chr11 27973051 27973113 -120810359 + LTR66 LTR ERVL 398 456 -154 282 73 0 0 chr11 27973314 27973355 -120810117 + (CA)n Simple_repeat Simple_repeat 2 42 0 278 393 52 6 chr11 27973555 27973728 -120809744 - L2 LINE L2 -575 2739 2559 21 36 0 0 chr11 27973796 27973824 -120809648 + AT_rich Low_complexity Low_complexity 1 28 0 184 331 101 50 chr11 27973824 27973872 -120809600 + MIR SINE MIR 45 89 -173 2389 151 0 3 chr11 27973872 27974236 -120809236 + THE1B LTR MaLR 1 363 -1 184 331 101 50 chr11 27974236 27974326 -120809146 + MIR SINE MIR 89 190 -72 1498 200 18 146 chr11 27974428 27974929 -120808543 + MER70A LTR ERVL 36 472 0 276 30 0 0 chr11 27975867 27975900 -120807572 + (TG)n Simple_repeat Simple_repeat 2 34 0 212 395 23 0 chr11 27975901 27975987 -120807485 + MER91B DNA MER1_type 102 189 -1 303 326 91 15 chr11 27976008 27976140 -120807332 - MIR SINE MIR -61 201 60 540 248 24 0 chr11 27976408 27976533 -120806939 - MER70A LTR ERVL 0 472 345 192 40 0 0 chr11 27978167 27978192 -120805280 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 255 248 0 105 chr11 27978656 27978761 -120804711 - L1MC4 LINE L1 -1349 6693 6600 5151 159 40 24 chr11 27979122 27980120 -120803352 + L1MA8 LINE L1 5277 6290 -1 2168 86 10 7 chr11 27980135 27980425 -120803047 + AluY SINE Alu 5 295 -16 1048 137 0 0 chr11 27980425 27980578 -120802894 + AluSq SINE Alu 134 286 -27 23 0 0 0 chr11 27980578 27980601 -120802871 + AT_rich Low_complexity Low_complexity 1 23 0 991 192 0 0 chr11 27980612 27980789 -120802683 + MLT1B LTR MaLR 163 339 -51 22 35 0 0 chr11 27980903 27980932 -120802540 + AT_rich Low_complexity Low_complexity 1 29 0 512 324 99 12 chr11 27981928 27982252 -120801220 + HAL1 LINE L1 1307 1658 -849 30 0 0 0 chr11 27982270 27982300 -120801172 + AT_rich Low_complexity Low_complexity 1 30 0 444 289 97 27 chr11 27982482 27982546 -120800926 + HAL1 LINE L1 2075 2133 -374 2126 126 0 13 chr11 27982546 27982855 -120800617 + AluSx SINE Alu 1 305 -7 444 289 97 27 chr11 27982855 27983088 -120800384 + HAL1 LINE L1 2133 2393 -114 2097 165 3 31 chr11 27985898 27986279 -120797193 - MLT1B LTR MaLR -20 370 1 1148 110 12 0 chr11 27986823 27986987 -120796485 + AluSg/x SINE Alu 145 310 0 2338 102 3 0 chr11 27987711 27988016 -120795456 + AluSx SINE Alu 1 306 -6 5056 150 2 28 chr11 27989354 27990263 -120793209 - L1PA14 LINE L1 0 6161 5276 25 0 0 0 chr11 27990980 27991005 -120792467 + AT_rich Low_complexity Low_complexity 1 25 0 199 297 161 19 chr11 27991078 27991233 -120792239 - MIR SINE MIR 0 262 86 914 19 0 0 chr11 27991271 27991378 -120792094 + L1PA4 LINE L1 6046 6152 -3 195 162 0 0 chr11 27992176 27992213 -120791259 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 1777 208 45 3 chr11 27992895 27993275 -120790197 - MSTD LTR MaLR 0 396 1 207 194 32 16 chr11 27994264 27994326 -120789146 + (TA)n Simple_repeat Simple_repeat 2 64 0 6825 48 106 125 chr11 27994718 27995139 -120788333 - L1P LINE L1 -1543 4603 4176 1149 79 0 0 chr11 27995139 27995291 -120788181 - MER11B LTR ERVK 0 1236 1085 6825 48 106 125 chr11 27995291 27995945 -120787527 - L1P LINE L1 -1970 4176 3400 7116 38 12 1 chr11 27995945 27997507 -120785965 + L1PA5 LINE L1 4597 6182 0 2031 244 47 15 chr11 27997576 27998104 -120785368 - MER74B LTR ERVL -77 545 1 294 325 74 30 chr11 27998303 27998506 -120784966 - MIR SINE MIR -50 212 1 2540 70 0 0 chr11 27998975 27999303 -120784169 + L1P4 LINE L1 5448 5775 -393 193 333 98 16 chr11 27999396 27999519 -120783953 - L2 LINE L2 -223 3049 2917 424 281 39 0 chr11 28000540 28000668 -120782804 + MIR SINE MIR 86 218 -44 181 374 22 43 chr11 28000847 28000986 -120782486 + L2 LINE L2 2960 3095 -177 36 94 0 0 chr11 28001226 28001332 -120782140 + AT_rich Low_complexity Low_complexity 1 106 0 21 36 0 0 chr11 28001442 28001470 -120782002 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr11 28001787 28001829 -120781643 + AT_rich Low_complexity Low_complexity 1 42 0 5574 141 62 3 chr11 28001951 28003750 -120779722 + L1PA13 LINE L1 4140 6056 -107 1590 204 0 0 chr11 28003756 28004041 -120779431 - AluJo SINE Alu -27 285 1 23 33 0 0 chr11 28004066 28004096 -120779376 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr11 28004174 28004211 -120779261 + AT_rich Low_complexity Low_complexity 1 37 0 605 257 50 54 chr11 28005403 28005664 -120777808 - MIR SINE MIR -1 261 2 381 98 0 0 chr11 28005956 28006007 -120777465 + AluSp/q SINE Alu 229 279 -24 432 0 0 0 chr11 28006007 28006055 -120777417 + (CA)n Simple_repeat Simple_repeat 2 49 0 200 267 86 29 chr11 28006582 28006687 -120776785 + MIR SINE MIR 139 249 -13 229 268 79 47 chr11 28007308 28007435 -120776037 - MIR SINE MIR -59 203 73 524 341 91 38 chr11 28007487 28007967 -120775505 - L2 LINE L2 -27 3286 2777 355 383 81 10 chr11 28008384 28008682 -120774790 - HERVL LTR ERVL -656 4998 4680 25 0 0 0 chr11 28009566 28009591 -120773881 + AT_rich Low_complexity Low_complexity 1 25 0 609 345 32 21 chr11 28009607 28010100 -120773372 - LTR33 LTR ERVL -1 520 1 324 248 86 8 chr11 28011060 28011177 -120772295 - MER113 DNA MER1_type? -394 127 2 314 295 134 0 chr11 28012785 28012897 -120770575 - MER45A DNA AcHobo -24 154 28 780 253 0 0 chr11 28013017 28013191 -120770281 - L1 LINE L1 -1983 4163 3990 3878 186 37 6 chr11 28013193 28013976 -120769496 + L1MA10 LINE L1 5528 6334 0 1884 159 0 7 chr11 28014175 28014477 -120768995 - AluJo SINE Alu -12 300 1 215 365 71 8 chr11 28014516 28014642 -120768830 - MIR SINE MIR -110 152 19 300 282 160 26 chr11 28014964 28015120 -120768352 - MIR SINE MIR 0 262 86 27 0 0 0 chr11 28015179 28015206 -120768266 + AT_rich Low_complexity Low_complexity 1 27 0 2313 271 49 14 chr11 28015270 28015924 -120767548 + MER76 LTR ERV 12 688 0 663 284 21 58 chr11 28016248 28016483 -120766989 + L1ME LINE L1 5176 5392 -772 1829 149 22 0 chr11 28016483 28016612 -120766860 + AluSx SINE Alu 1 126 -194 234 0 0 0 chr11 28016612 28016638 -120766834 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1829 149 22 0 chr11 28016638 28016822 -120766650 + AluSx SINE Alu 126 320 0 663 284 21 58 chr11 28016822 28017038 -120766434 + L1ME LINE L1 5392 5615 -549 1837 132 10 26 chr11 28017953 28018257 -120765215 - AluSx SINE Alu -13 299 1 803 206 57 6 chr11 28018324 28018521 -120764951 - MSTC LTR MaLR 0 396 219 292 240 25 16 chr11 28018522 28018643 -120764829 - L1ME LINE L1 -5079 1126 1005 997 203 4 35 chr11 28018647 28018879 -120764593 - AluJb SINE Alu -3 309 85 318 301 97 47 chr11 28018880 28019408 -120764064 - L1ME LINE L1 -5344 1052 499 238 284 67 37 chr11 28019493 28019627 -120763845 - L1ME LINE L1 -6044 352 215 243 103 0 0 chr11 28019748 28019787 -120763685 + (CA)n Simple_repeat Simple_repeat 1 39 0 23 54 0 0 chr11 28019870 28019907 -120763565 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 28019921 28019942 -120763530 + AT_rich Low_complexity Low_complexity 1 21 0 325 333 70 8 chr11 28021894 28022033 -120761439 - MIR SINE MIR -66 142 28 286 236 14 0 chr11 28022807 28022879 -120760593 + MLT1A1 LTR MaLR 291 363 -2 4331 254 91 38 chr11 28023281 28026146 -120757326 - L1 LINE L1 -3532 2678 4 206 365 14 0 chr11 28026152 28026226 -120757246 + L2 LINE L2 2295 2369 -945 1034 324 44 33 chr11 28026274 28026793 -120756679 + L2 LINE L2 2383 2907 -407 696 223 131 0 chr11 28026801 28026976 -120756496 + MER3 DNA MER1_type 7 204 -5 621 290 101 31 chr11 28027026 28027343 -120756129 + L2 LINE L2 2973 3311 -2 438 320 70 13 chr11 28028096 28028324 -120755148 + MIR SINE MIR 13 253 -9 2027 114 40 10 chr11 28028819 28029118 -120754354 + AluSg SINE Alu 1 308 -2 970 225 35 23 chr11 28029736 28030114 -120753358 - MLT1D LTR MaLR -7 498 80 2496 111 19 6 chr11 28030114 28030473 -120752999 - THE1B LTR MaLR 0 364 1 970 225 35 23 chr11 28030473 28030549 -120752923 - MLT1D LTR MaLR -425 80 6 333 271 36 71 chr11 28030999 28031139 -120752333 - MIR SINE MIR -65 197 63 612 315 98 25 chr11 28031154 28031513 -120751959 + L2 LINE L2 993 1377 -1937 259 302 68 5 chr11 28031630 28031737 -120751735 + MIR SINE MIR 36 141 -67 855 253 10 5 chr11 28032021 28032219 -120751253 + MER58A DNA MER1_type 11 209 -15 235 363 57 8 chr11 28032234 28032358 -120751114 + MIR3 SINE MIR 27 156 -52 1477 252 84 79 chr11 28032380 28032964 -120750508 + MLT1E LTR MaLR 3 589 -4 316 223 97 29 chr11 28034419 28034522 -120748950 + MIR SINE MIR 114 223 -39 1470 182 64 42 chr11 28035420 28035750 -120747722 + MER1B DNA MER1_type 1 337 0 709 230 35 6 chr11 28036163 28036337 -120747135 + L1MD3 LINE L1 6705 6883 -1112 1234 190 36 4 chr11 28036369 28036616 -120746856 + L1MC3 LINE L1 7158 7412 -373 871 272 35 91 chr11 28036621 28037161 -120746311 - L1ME1 LINE L1 -109 6057 5548 * 41297 62 5 0 chr11 28037157 28043280 -120740192 - L1PA5 LINE L1 -6 6148 5 427 267 64 11 chr11 28043357 28043544 -120739928 - L1ME1 LINE L1 -1333 4813 4617 1310 228 111 8 chr11 28043603 28043948 -120739524 + MSTD LTR MaLR 1 382 -9 441 0 0 0 chr11 28043948 28043997 -120739475 + (CA)n Simple_repeat Simple_repeat 2 50 0 5323 265 71 25 chr11 28044011 28045638 -120737834 + MSTD-int LTR MaLR 16 1716 -19 1500 218 63 24 chr11 28045656 28046037 -120737435 + MSTD LTR MaLR 1 396 0 367 240 81 47 chr11 28046038 28046296 -120737176 - L1ME1 LINE L1 -1592 4554 4288 798 269 34 57 chr11 28046370 28046430 -120737042 - L1ME1 LINE L1 -2793 3353 3293 2385 71 3 7 chr11 28046430 28046739 -120736733 - AluY SINE Alu -3 308 1 798 269 34 57 chr11 28046739 28046981 -120736491 - L1ME1 LINE L1 -2853 3293 3064 1467 234 0 0 chr11 28046981 28047290 -120736182 - AluJo SINE Alu 0 309 1 798 269 34 57 chr11 28047290 28047491 -120735981 - L1ME1 LINE L1 -3082 3064 2860 715 284 53 9 chr11 28047528 28047849 -120735623 - L1ME1 LINE L1 -3380 2766 2432 540 306 12 12 chr11 28048535 28048708 -120734764 + MER5B DNA MER1_type 1 173 -5 296 302 216 7 chr11 28048719 28048858 -120734614 - MIR SINE MIR -65 197 30 233 250 36 18 chr11 28049384 28049440 -120734032 + MIR SINE MIR 6 62 -200 2318 137 72 5 chr11 28051133 28051534 -120731938 - MSTA LTR MaLR 0 428 1 5111 172 44 0 chr11 28051536 28052419 -120731053 - MSTA-int LTR MaLR -2 1649 728 2949 181 48 0 chr11 28052417 28052959 -120730513 - MSTA-int LTR MaLR -1083 568 1 * 2254 179 33 12 chr11 28052959 28053378 -120730094 - MSTA LTR MaLR 0 428 1 260 398 16 0 chr11 28054796 28054924 -120728548 - MIR3 SINE MIR -5 203 74 35 0 0 0 chr11 28055254 28055289 -120728183 + AT_rich Low_complexity Low_complexity 1 35 0 2273 133 10 31 chr11 28055290 28055673 -120727799 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr11 28055701 28055736 -120727736 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 28055790 28055819 -120727653 + AT_rich Low_complexity Low_complexity 1 29 0 209 330 134 0 chr11 28057433 28057545 -120725927 + MIR SINE MIR 4 130 -132 22 35 0 0 chr11 28057557 28057586 -120725886 + AT_rich Low_complexity Low_complexity 1 29 0 2010 151 0 19 chr11 28057695 28058007 -120725465 - AluSx SINE Alu -6 306 1 213 39 0 0 chr11 28058026 28058052 -120725420 + (T)n Simple_repeat Simple_repeat 1 26 0 6290 38 7 1 chr11 28058451 28059272 -120724200 - L1PA4 LINE L1 -723 5432 4608 6137 33 0 0 chr11 28059272 28059988 -120723484 + L1PA4 LINE L1 5428 6152 -3 381 258 8 76 chr11 28060505 28060637 -120722835 - MER5A DNA MER1_type 0 189 67 1942 136 14 49 chr11 28062398 28062765 -120720707 - L1MA4A LINE L1 -299 6004 5651 1339 166 21 21 chr11 28062765 28063047 -120720425 + L1MA4A LINE L1 6011 6293 -10 21 36 0 0 chr11 28063539 28063567 -120719905 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 28064869 28064890 -120718582 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 28064948 28064971 -120718501 + AT_rich Low_complexity Low_complexity 1 23 0 4613 164 11 19 chr11 28065389 28066288 -120717184 - L1MB3 LINE L1 -7 6176 5285 2199 109 3 3 chr11 28066304 28066608 -120716864 - AluSq SINE Alu -9 304 1 271 140 18 18 chr11 28066738 28066795 -120716677 + L1MB2 LINE L1 6108 6164 -7 4470 50 7 0 chr11 28066863 28067425 -120716047 - L1PA4 LINE L1 0 6155 5590 2256 64 10 17 chr11 28067665 28067961 -120715511 - AluY SINE Alu -17 294 1 350 205 51 0 chr11 28068372 28068450 -120715022 - MER103 DNA DNA -15 151 70 227 264 69 0 chr11 28070218 28070290 -120713182 - MIR SINE MIR -79 129 53 288 0 0 0 chr11 28070497 28070529 -120712943 + (TG)n Simple_repeat Simple_repeat 2 33 0 1994 124 20 7 chr11 28070674 28070973 -120712499 + AluSq SINE Alu 5 307 -6 2211 118 0 0 chr11 28071464 28071769 -120711703 - AluSc SINE Alu -4 305 1 208 256 0 0 chr11 28072905 28072948 -120710524 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 252 244 23 0 chr11 28072950 28073036 -120710436 + L1MC4 LINE L1 6616 6703 -1339 226 282 24 0 chr11 28073008 28073093 -120710379 - L1MC4 LINE L1 -1339 6703 6617 * 327 104 0 0 chr11 28073096 28073144 -120710328 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 249 270 0 0 chr11 28073147 28073236 -120710236 + L1MC4 LINE L1 6615 6703 -1339 393 133 67 0 chr11 28073242 28073332 -120710140 + (TATATG)n Simple_repeat Simple_repeat 5 100 0 230 245 0 43 chr11 28073333 28073427 -120710045 + L1MC4 LINE L1 6614 6703 -1339 261 210 0 0 chr11 28073427 28073489 -120709983 + (TA)n Simple_repeat Simple_repeat 2 63 0 268 276 23 0 chr11 28073490 28073577 -120709895 + L1MC4 LINE L1 6615 6703 -1339 241 267 23 0 chr11 28073579 28073665 -120709807 - L1MC4 LINE L1 -1341 6701 6614 236 258 0 22 chr11 28073622 28073711 -120709761 + L1MC4 LINE L1 6617 6703 -1339 * 257 250 24 0 chr11 28073718 28073802 -120709670 + L1MC4 LINE L1 6617 6702 -1340 214 205 0 0 chr11 28073803 28073842 -120709630 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 113 0 48 chr11 28073843 28073905 -120709567 + LTR66 LTR ERVL 398 456 -154 282 73 0 0 chr11 28074106 28074147 -120709325 + (CA)n Simple_repeat Simple_repeat 2 42 0 278 393 52 6 chr11 28074347 28074520 -120708952 - L2 LINE L2 -575 2739 2559 21 36 0 0 chr11 28074588 28074616 -120708856 + AT_rich Low_complexity Low_complexity 1 28 0 184 331 101 50 chr11 28074616 28074664 -120708808 + MIR SINE MIR 45 89 -173 2389 151 0 3 chr11 28074664 28075028 -120708444 + THE1B LTR MaLR 1 363 -1 184 331 101 50 chr11 28075028 28075118 -120708354 + MIR SINE MIR 89 190 -72 1498 200 18 146 chr11 28075220 28075721 -120707751 + MER70A LTR ERVL 36 472 0 276 30 0 0 chr11 28076659 28076692 -120706780 + (TG)n Simple_repeat Simple_repeat 2 34 0 212 395 23 0 chr11 28076693 28076779 -120706693 + MER91B DNA MER1_type 102 189 -1 2083 148 54 36 chr11 28077197 28077728 -120705744 + MLT2A2 LTR ERVL 1 554 0 2003 135 26 52 chr11 28078044 28078429 -120705043 - THE1C LTR MaLR 0 375 1 8258 110 4 4 chr11 28079542 28080765 -120702707 - L1P3 LINE L1 -5176 1285 63 3768 133 183 91 chr11 28081532 28082873 -120700599 - pTR5 LTR ERV1 -23 2039 35 216 182 0 0 chr11 28083218 28083262 -120700210 + (TA)n Simple_repeat Simple_repeat 1 44 0 2114 112 0 26 chr11 28083286 28083599 -120699873 - AluSc SINE Alu -4 305 1 1229 255 48 82 chr11 28083762 28084257 -120699215 + MLT2B1 LTR ERVL 1 478 -42 378 0 0 0 chr11 28084257 28084299 -120699173 + (CA)n Simple_repeat Simple_repeat 2 43 0 1229 255 48 82 chr11 28084299 28084341 -120699131 + MLT2B1 LTR ERVL 478 520 0 269 307 123 6 chr11 28085352 28085515 -120697957 + LTR16A LTR ERVL 7 188 -262 312 245 51 20 chr11 28087082 28087180 -120696292 + L2 LINE L2 2845 2945 -369 655 352 65 23 chr11 28087267 28087835 -120695637 + L1M2b LINE L1 52 643 -6566 2095 277 35 26 chr11 28088801 28090146 -120693326 + L1PA15-16 LINE L1 806 2308 -4541 1774 159 0 116 chr11 28090164 28090517 -120692955 - Charlie3 DNA MER1_type -25 2685 1 1553 123 4 0 chr11 28090868 28091119 -120692353 - L1P LINE L1 -2086 4060 3809 470 91 13 0 chr11 28092857 28092934 -120690538 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 439 325 80 10 chr11 28092957 28093157 -120690315 - MIR SINE MIR -1 261 48 24 32 0 0 chr11 28093508 28093539 -120689933 + AT_rich Low_complexity Low_complexity 1 31 0 883 356 45 16 chr11 28093731 28094248 -120689224 + MLT2E LTR ERVL 47 578 -50 25 0 0 0 chr11 28094398 28094423 -120689049 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr11 28094814 28094844 -120688628 + AT_rich Low_complexity Low_complexity 1 30 0 807 233 90 17 chr11 28096036 28096489 -120686983 + MLT1E1 LTR MaLR 59 631 -22 189 171 0 0 chr11 28096682 28096717 -120686755 + GA-rich Low_complexity Low_complexity 3 37 0 275 170 0 0 chr11 28097431 28097478 -120685994 - LTR28 LTR ERV1 -665 355 309 * 375 250 34 40 chr11 28097453 28097645 -120685827 - MER52A LTR ERV1 -600 747 1 7771 247 33 34 chr11 28097646 28101978 -120681494 - L1PA12 LINE L1 -2208 5376 1539 664 230 29 25 chr11 28102528 28102732 -120680740 - MER3 DNA MER1_type 0 209 5 249 163 0 0 chr11 28102904 28102953 -120680519 + (TG)n Simple_repeat Simple_repeat 2 50 0 952 265 91 56 chr11 28103079 28103624 -120679848 - MLT1F1 LTR MaLR -2 565 1 329 343 48 0 chr11 28103687 28103833 -120679639 - MIR SINE MIR 0 262 110 6490 256 9 10 chr11 28104078 28105072 -120678400 + L1P LINE L1 2508 3500 -2646 2127 101 40 0 chr11 28105072 28105369 -120678103 + AluY SINE Alu 1 309 -2 6490 256 9 10 chr11 28105369 28106342 -120677130 + L1P LINE L1 3500 4473 -1673 * 41002 49 3 2 chr11 28106341 28112123 -120671349 + L1PA4 LINE L1 3 5789 -366 1009 47 0 0 chr11 28112123 28112250 -120671222 + L1PA4 LINE L1 6020 6147 -8 2948 62 3 3 chr11 28112264 28112650 -120670822 + L1PA4 LINE L1 5770 6155 0 3060 226 6 6 chr11 28112650 28113441 -120670031 + L1P LINE L1 4461 5251 -895 1418 146 45 0 chr11 28113541 28113787 -120669685 + L1PA15 LINE L1 5907 6163 -2 183 42 0 0 chr11 28114288 28114312 -120669160 + (CCAA)n Simple_repeat Simple_repeat 1 24 0 325 287 43 0 chr11 28114781 28114875 -120668597 + MIR SINE MIR 44 141 -67 347 260 101 48 chr11 28114906 28115114 -120668358 + L1MC4a LINE L1 5671 5889 -1919 268 303 33 20 chr11 28115370 28115522 -120667950 - L1MC5 LINE L1 -427 7534 7381 2569 132 51 8 chr11 28115527 28115915 -120667557 + Tigger3(Golem) DNA MER2_type 2226 2641 -388 1496 198 30 17 chr11 28115915 28116213 -120667259 + AluJo SINE Alu 1 302 -10 2569 132 51 8 chr11 28116213 28116318 -120667154 + Tigger3(Golem) DNA MER2_type 2641 2740 -289 1057 176 21 0 chr11 28116323 28116510 -120666962 - AluSg/x SINE Alu -1 311 121 1141 182 112 0 chr11 28116510 28116768 -120666704 + Tigger3(Golem) DNA MER2_type 2742 3028 -1 2362 239 28 42 chr11 28117479 28118228 -120665244 - L1MB7 LINE L1 -6 6178 5441 2316 107 7 0 chr11 28118228 28118536 -120664936 - AluSp SINE Alu -3 310 1 2362 239 28 42 chr11 28118536 28118610 -120664862 - L1MB7 LINE L1 -743 5441 5367 467 224 0 0 chr11 28118613 28118725 -120664747 - L1PA16 LINE L1 -3 6153 6042 456 253 20 35 chr11 28118729 28118752 -120664720 - L1MB7 LINE L1 -2123 4023 4001 2142 144 14 27 chr11 28118752 28119121 -120664351 + THE1B LTR MaLR 1 364 0 456 253 20 35 chr11 28119121 28119299 -120664173 - L1MB7 LINE L1 -2145 4001 3825 284 350 51 13 chr11 28120700 28120857 -120662615 - MIR SINE MIR -34 228 66 1818 187 39 0 chr11 28121182 28121546 -120661926 - L1MB1 LINE L1 0 6168 5791 308 368 96 6 chr11 28121740 28122085 -120661387 + L2 LINE L2 1698 2073 -1241 284 316 23 38 chr11 28122337 28122470 -120661002 + MLT1J LTR MaLR 287 417 -94 218 381 0 12 chr11 28122833 28122917 -120660555 + L2 LINE L2 3180 3262 -10 690 328 3 24 chr11 28123041 28123328 -120660144 - LTR16A LTR ERVL 0 450 170 207 0 0 0 chr11 28124234 28124257 -120659215 + (TA)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr11 28125427 28125455 -120658017 + AT_rich Low_complexity Low_complexity 1 28 0 181 319 43 0 chr11 28126234 28126303 -120657169 - MIR SINE MIR -59 149 78 24 32 0 0 chr11 28126836 28126867 -120656605 + AT_rich Low_complexity Low_complexity 1 31 0 1786 166 50 73 chr11 28127096 28127591 -120655881 + L1MB8 LINE L1 5497 5980 -198 22 0 0 0 chr11 28127630 28127652 -120655820 + AT_rich Low_complexity Low_complexity 1 22 0 183 389 0 0 chr11 28127938 28128028 -120655444 + L3 LINE CR1 1488 1577 0 220 306 71 12 chr11 28128575 28128660 -120654812 + L2 LINE L2 3161 3250 -22 3572 172 20 20 chr11 28128953 28129085 -120654387 - L1MC1 LINE L1 -3 6330 6199 1708 195 33 12 chr11 28129085 28129419 -120654053 + MER2 DNA MER2_type 1 341 -3 3572 172 20 20 chr11 28129419 28129997 -120653475 - L1MC1 LINE L1 -133 6200 5620 313 328 71 94 chr11 28130065 28130587 -120652885 + L2 LINE L2 2804 3313 0 735 302 43 82 chr11 28131714 28131978 -120651494 + L2 LINE L2 2775 3013 -300 612 63 74 11 chr11 28131978 28132073 -120651399 - L1PA2 LINE L1 -1 6154 6054 735 302 43 82 chr11 28132073 28132338 -120651134 + L2 LINE L2 3013 3287 -26 288 0 0 0 chr11 28132752 28132784 -120650688 + (CA)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr11 28133103 28133125 -120650347 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 182 191 21 0 chr11 28133265 28133312 -120650160 + CT-rich Low_complexity Low_complexity 2 49 0 505 338 70 5 chr11 28133618 28133819 -120649653 - MIR SINE MIR -20 242 29 1154 211 13 4 chr11 28135683 28135911 -120647561 + MLT2B3 LTR ERVL 2 231 -323 375 244 17 52 chr11 28135973 28136088 -120647384 + MLT2B3 LTR ERVL 236 346 -208 1533 219 62 21 chr11 28136496 28136916 -120646556 - L1MB7 LINE L1 0 6184 5748 28278 108 9 8 chr11 28136947 28142142 -120641330 - L1PA7 LINE L1 0 6154 957 419 337 24 12 chr11 28142588 28142757 -120640715 + MLT1H1 LTR MaLR 1 171 -384 2150 115 0 10 chr11 28142757 28143062 -120640410 + AluSx SINE Alu 1 302 -10 24 67 0 0 chr11 28143179 28143224 -120640248 + AT_rich Low_complexity Low_complexity 1 45 0 252 339 81 40 chr11 28144203 28144451 -120639021 - L2 LINE L2 -40 3273 3016 189 374 32 52 chr11 28144489 28144644 -120638828 - L2 LINE L2 -380 2933 2783 318 294 33 0 chr11 28144671 28144763 -120638709 - L2 LINE L2 -690 2624 2530 22 0 0 0 chr11 28145035 28145057 -120638415 + AT_rich Low_complexity Low_complexity 1 22 0 729 161 49 0 chr11 28145132 28145275 -120638197 - L1MA7 LINE L1 -183 6108 5959 458 348 34 0 chr11 28145275 28145453 -120638019 - LTR33 LTR ERVL -337 184 1 325 325 22 61 chr11 28145798 28146026 -120637446 + L1ME1 LINE L1 53 271 -5774 1395 261 66 23 chr11 28146639 28147152 -120636320 + L1ME1 LINE L1 4104 4638 -1926 3004 161 10 44 chr11 28147389 28147997 -120635475 + L1MC2 LINE L1 5754 6343 -1 854 269 48 6 chr11 28148013 28148325 -120635147 + L1ME1 LINE L1 4991 5315 -1249 14178 31 2 0 chr11 28148336 28150808 -120632664 - L1PA4 LINE L1 -3 6152 3673 222 279 16 0 chr11 28151170 28151231 -120632241 + (CA)n Simple_repeat Simple_repeat 1 62 0 1464 284 33 2 chr11 28151232 28151718 -120631754 + L1ME1 LINE L1 5695 6195 -389 906 160 19 87 chr11 28151762 28151968 -120631504 + AluSg/x SINE Alu 121 312 0 610 231 75 9 chr11 28151975 28152319 -120631153 + L1ME1 LINE L1 6184 6579 -5 35 0 0 0 chr11 28152594 28152629 -120630843 + AT_rich Low_complexity Low_complexity 1 35 0 387 274 47 28 chr11 28153143 28153249 -120630223 + MIR SINE MIR 39 146 -62 1310 88 0 0 chr11 28154318 28154489 -120628983 - AluY SINE Alu -10 301 131 2158 195 25 7 chr11 28155680 28156115 -120627357 - L1MA9 LINE L1 -314 5998 5556 497 192 96 8 chr11 28156638 28156763 -120626709 + L1MA3 LINE L1 4548 4683 -1463 1749 243 60 19 chr11 28156821 28156907 -120626565 + L1 LINE L1 4547 4628 -1518 2468 56 3 3 chr11 28156907 28157213 -120626259 + AluY SINE Alu 1 306 -5 1749 243 60 19 chr11 28157213 28157695 -120625777 + L1 LINE L1 4628 5138 -1008 258 32 0 0 chr11 28157703 28157734 -120625738 + (TG)n Simple_repeat Simple_repeat 1 31 0 3713 185 31 42 chr11 28157754 28158934 -120624538 - L1M2 LINE L1 -602 5689 4519 3166 167 41 35 chr11 28158931 28159594 -120623878 + L1MA3 LINE L1 5618 6284 -21 * 364 188 154 0 chr11 28159676 28159793 -120623679 + L1 LINE L1 5172 5306 -840 25 0 0 0 chr11 28159999 28160024 -120623448 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr11 28160109 28160140 -120623332 + AT_rich Low_complexity Low_complexity 1 31 0 434 236 63 12 chr11 28160205 28160369 -120623103 + L1ME2 LINE L1 5998 6331 -3 1167 213 8 4 chr11 28162643 28162883 -120620589 - MLT1B LTR MaLR -149 241 1 189 74 0 0 chr11 28163257 28163284 -120620188 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 0 0 33 chr11 28164289 28164319 -120619153 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 5418 136 12 41 chr11 28164319 28165902 -120617570 - L1PA10 LINE L1 -21 6147 4615 203 278 14 0 chr11 28166445 28166517 -120616955 + T-rich Low_complexity Low_complexity 4 76 0 253 265 93 60 chr11 28166521 28166646 -120616826 - L1MEc LINE L1 -4317 2079 1960 1624 177 63 28 chr11 28166646 28167008 -120616464 + THE1C LTR MaLR 1 375 0 253 265 93 60 chr11 28167008 28167150 -120616322 - L1MEc LINE L1 -4436 1960 1803 195 184 0 0 chr11 28167345 28167383 -120616089 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 830 189 0 13 chr11 28167388 28167547 -120615925 + MER39 LTR ERV1 534 690 -17 281 240 29 48 chr11 28167708 28167812 -120615660 + L1ME4a LINE L1 5950 6051 -70 4466 250 29 34 chr11 28168199 28170781 -120612691 + L1PA13 LINE L1 2 3101 -3696 249 197 0 0 chr11 28171110 28171186 -120612286 + (TG)n Simple_repeat Simple_repeat 2 77 0 1032 156 0 0 chr11 28171224 28171404 -120612068 + (TA)n Simple_repeat Simple_repeat 1 180 0 3837 81 4 13 chr11 28171407 28171950 -120611522 + L1PA8 LINE L1 5629 6166 -6 2083 239 58 5 chr11 28171953 28172592 -120610880 + MER45R DNA AcHobo 908 1580 -1 24 0 0 0 chr11 28176340 28176364 -120607108 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 28178089 28178117 -120605355 + AT_rich Low_complexity Low_complexity 1 28 0 7981 243 14 23 chr11 28178184 28180690 -120602782 - L1PBb LINE L1 -1788 4415 1933 617 113 21 10 chr11 28180690 28180787 -120602685 + MER4A LTR ERV1 1 98 -566 1682 128 201 26 chr11 28180787 28181131 -120602341 + MER4A LTR ERV1 261 664 0 3303 248 34 32 chr11 28181131 28182286 -120601186 - L1PBb LINE L1 -4267 1936 691 298 315 0 0 chr11 28182273 28182365 -120601107 - L1PA15-16 LINE L1 -5286 1563 1472 * 289 355 0 0 chr11 28182365 28182458 -120601014 - L1PA15-16 LINE L1 -5286 1563 1471 267 388 32 11 chr11 28182672 28182860 -120600612 - L2 LINE L2 -427 2887 2696 8868 32 17 0 chr11 28182864 28184687 -120598785 + L1PA4 LINE L1 4293 6142 -13 257 241 46 11 chr11 28184705 28184792 -120598680 + L1ME LINE L1 5511 5600 -521 1280 78 73 5 chr11 28184792 28184983 -120598489 + L1PB1 LINE L1 5948 6151 0 2148 62 0 21 chr11 28185086 28185426 -120598046 - AluY SINE Alu 0 334 1 188 324 49 39 chr11 28185725 28185827 -120597645 + MIR SINE MIR 37 139 -69 472 296 6 31 chr11 28187034 28187193 -120596279 + MIR SINE MIR 108 262 0 496 264 108 65 chr11 28189261 28189423 -120594049 + MIR SINE MIR 1 177 -85 1636 189 0 3 chr11 28189423 28189720 -120593752 - AluJb SINE Alu -16 296 1 496 264 108 65 chr11 28189720 28189788 -120593684 + MIR SINE MIR 177 241 -21 23 0 0 0 chr11 28189816 28189839 -120593633 + AT_rich Low_complexity Low_complexity 1 23 0 457 147 0 0 chr11 28189839 28189914 -120593558 - MADE1 DNA Mariner -5 75 1 21 0 0 0 chr11 28190064 28190085 -120593387 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr11 28190184 28190220 -120593252 + AT_rich Low_complexity Low_complexity 1 36 0 281 373 31 52 chr11 28191127 28191218 -120592254 + MER91B DNA MER1_type 2 93 -97 1585 183 0 27 chr11 28191218 28191519 -120591953 - AluJb SINE Alu -19 293 1 281 373 31 52 chr11 28191519 28191620 -120591852 + MER91B DNA MER1_type 93 190 0 331 305 61 15 chr11 28192472 28192603 -120590869 - MIR SINE MIR -67 195 59 217 343 62 34 chr11 28192793 28192939 -120590533 + L2 LINE L2 2554 2703 -611 2667 216 5 26 chr11 28193463 28194029 -120589443 - MLT2B3 LTR ERVL 0 554 1 1372 224 40 63 chr11 28195890 28196444 -120587028 - MER67C LTR ERV1 0 514 1 186 224 0 0 chr11 28196508 28196557 -120586915 + C-rich Low_complexity Low_complexity 4 52 0 217 245 32 75 chr11 28196718 28196812 -120586660 + MIR SINE MIR 49 138 -124 315 0 0 0 chr11 28197990 28198025 -120585447 + (TG)n Simple_repeat Simple_repeat 1 35 0 1514 210 7 10 chr11 28199252 28199557 -120583915 + AluJb SINE Alu 1 304 -8 530 198 55 93 chr11 28199560 28199742 -120583730 - L1MA10 LINE L1 -45 6289 6115 3620 165 28 30 chr11 28199756 28200452 -120583020 - L1MA4 LINE L1 0 6300 5604 419 171 13 0 chr11 28200452 28200528 -120582944 - MADE1 DNA Mariner 0 80 4 3620 165 28 30 chr11 28200528 28200606 -120582866 - L1MA4 LINE L1 -696 5604 5527 1335 99 0 0 chr11 28200608 28200780 -120582692 + AluSq SINE Alu 1 172 -141 7528 199 31 20 chr11 28200798 28202751 -120580721 - L1MA4 LINE L1 -743 5403 3575 3254 202 55 25 chr11 28202750 28203350 -120580122 - L1MB1 LINE L1 -55 6113 5461 * 2143 182 36 5 chr11 28203350 28203763 -120579709 - MSTA LTR MaLR -2 426 1 3254 202 55 25 chr11 28203763 28204154 -120579318 - L1MB1 LINE L1 -707 5461 5083 1446 231 9 0 chr11 28204186 28204511 -120578961 + L1 LINE L1 4706 5033 -1113 30 0 0 0 chr11 28204594 28204624 -120578848 + AT_rich Low_complexity Low_complexity 1 30 0 185 364 38 38 chr11 28205510 28205694 -120577778 + L2 LINE L2 2595 2778 -536 1956 117 0 7 chr11 28206322 28206634 -120576838 + AluSg SINE Alu 1 310 0 467 228 70 13 chr11 28206693 28206851 -120576621 + L1MB4 LINE L1 6013 6179 -1 336 143 95 0 chr11 28207312 28207375 -120576097 + L1MB3 LINE L1 5712 5780 -391 719 222 28 0 chr11 28207426 28207570 -120575902 + MER74A LTR ERVL 15 162 -396 798 237 33 63 chr11 28207606 28208054 -120575418 + MER74B LTR ERVL 147 572 -50 2132 134 25 11 chr11 28208054 28208419 -120575053 + THE1C LTR MaLR 5 374 -1 798 237 33 63 chr11 28208419 28208469 -120575003 + MER74B LTR ERVL 572 622 0 1712 189 39 13 chr11 28208469 28208856 -120574616 + L1MB3 LINE L1 5787 6183 0 192 318 0 0 chr11 28209010 28209054 -120574418 + L2 LINE L2 3251 3294 -19 * 204 231 0 0 chr11 28209024 28209063 -120574409 + MIR SINE MIR 220 258 -4 1164 189 181 0 chr11 28209080 28209334 -120574138 - AluJo SINE Alu -2 300 1 322 294 13 100 chr11 28210597 28210828 -120572644 - L1MEc LINE L1 -5024 1360 1150 412 360 24 39 chr11 28210859 28211240 -120572232 - L1MEc LINE L1 -5872 691 317 27 29 0 0 chr11 28212454 28212488 -120570984 + AT_rich Low_complexity Low_complexity 1 34 0 275 357 26 31 chr11 28212521 28212868 -120570604 - L2 LINE L2 0 3313 2896 253 358 80 25 chr11 28213193 28213394 -120570078 - MIR SINE MIR -50 212 1 180 0 0 0 chr11 28213485 28213505 -120569967 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr11 28213504 28213531 -120569941 + (GA)n Simple_repeat Simple_repeat 2 28 0 1381 175 24 58 chr11 28213699 28213991 -120569481 + AluJo SINE Alu 13 294 -18 1401 129 33 0 chr11 28214341 28214581 -120568891 - L1MA1 LINE L1 0 6302 6055 22 0 0 0 chr11 28214585 28214607 -120568865 + AT_rich Low_complexity Low_complexity 1 22 0 1738 165 10 0 chr11 28215095 28215392 -120568080 + AluJb SINE Alu 1 300 -12 2525 55 0 0 chr11 28216321 28216630 -120566842 + AluY SINE Alu 1 309 -2 328 238 0 0 chr11 28217080 28217143 -120566329 + L1M2 LINE L1 2 64 -6785 23 54 0 0 chr11 28217337 28217374 -120566098 + AT_rich Low_complexity Low_complexity 1 37 0 199 287 35 69 chr11 28218535 28218622 -120564850 - MIR SINE MIR -118 144 61 231 196 0 0 chr11 28218649 28218695 -120564777 + CT-rich Low_complexity Low_complexity 1 46 0 642 218 47 80 chr11 28218963 28219141 -120564331 - MLT1E3 LTR MaLR -4 611 436 1102 78 0 48 chr11 28219161 28219327 -120564145 + MLT2A1 LTR ERVL 287 444 0 624 374 89 31 chr11 28219763 28220402 -120563070 + L3 LINE CR1 823 1498 -79 190 231 0 0 chr11 28220405 28220444 -120563028 - MER5A DNA MER1_type 0 189 151 3056 26 0 0 chr11 28220478 28220861 -120562611 - L1P2 LINE L1 -539 5615 5232 2002 174 82 32 chr11 28221034 28221495 -120561977 - LTR2B LTR ERV1 0 490 7 23 0 0 0 chr11 28222033 28222056 -120561416 + AT_rich Low_complexity Low_complexity 1 23 0 232 268 51 123 chr11 28222546 28222684 -120560788 - L2 LINE L2 -4 3309 3182 303 362 0 29 chr11 28223472 28223577 -120559895 + L2 LINE L2 2898 2999 -314 1456 114 117 24 chr11 28223838 28224128 -120559344 - THE1C LTR MaLR -58 317 1 233 286 105 53 chr11 28224303 28224474 -120558998 + MIR3 SINE MIR 17 196 -12 225 347 0 11 chr11 28225235 28225330 -120558142 - L1PA12 LINE L1 -6074 1507 1414 35 41 0 0 chr11 28225759 28225808 -120557664 + AT_rich Low_complexity Low_complexity 1 49 0 320 233 33 33 chr11 28225821 28225911 -120557561 - MIR SINE MIR -57 205 116 211 353 20 7 chr11 28226046 28226199 -120557273 + (TA)n Simple_repeat Simple_repeat 2 156 0 297 167 0 0 chr11 28429324 28429378 -120354094 + (CATA)n Simple_repeat Simple_repeat 1 54 0 287 188 163 12 chr11 28429541 28429621 -120353851 + MIR SINE MIR 63 154 -108 30 27 0 0 chr11 28429714 28429751 -120353721 + AT_rich Low_complexity Low_complexity 1 37 0 225 294 49 49 chr11 28430194 28430337 -120353135 + MIR SINE MIR 12 154 -108 2286 104 10 0 chr11 28431029 28431326 -120352146 + AluSp SINE Alu 4 303 -10 180 77 0 0 chr11 28431852 28431878 -120351594 + (GA)n Simple_repeat Simple_repeat 1 26 0 387 262 75 0 chr11 28432626 28432733 -120350739 + MIR3 SINE MIR 91 205 -3 23 33 0 0 chr11 28432797 28432827 -120350645 + AT_rich Low_complexity Low_complexity 1 30 0 339 329 70 35 chr11 28432895 28433123 -120350349 + MIR SINE MIR 1 236 -26 21 0 0 0 chr11 28433377 28433398 -120350074 + AT_rich Low_complexity Low_complexity 1 21 0 702 247 133 7 chr11 28433769 28434048 -120349424 - LTR33A LTR ERVL -7 516 203 323 256 0 23 chr11 28434706 28434792 -120348680 + CT-rich Low_complexity Low_complexity 2 85 0 226 354 22 3 chr11 28434875 28434982 -120348490 + MIR SINE MIR 28 114 -94 272 290 0 0 chr11 28434982 28435044 -120348428 + polypyrimidine Low_complexity Low_complexity 1 62 0 703 161 21 34 chr11 28435044 28435328 -120348144 + CT-rich Low_complexity Low_complexity 1 280 0 675 197 0 0 chr11 28435332 28435449 -120348023 - FRAM SINE Alu -14 162 46 6676 37 0 0 chr11 28435549 28436927 -120346545 - L1PA4 LINE L1 -78 6077 4700 296 245 39 26 chr11 28436969 28437124 -120346348 + L1ME LINE L1 857 1013 -5057 699 288 114 34 chr11 28437220 28437248 -120346224 + L2 LINE L2 3022 3046 -267 1589 181 72 26 chr11 28437248 28437597 -120345875 + MLT1A1 LTR MaLR 1 365 0 699 288 114 34 chr11 28437597 28437832 -120345640 + L2 LINE L2 3046 3306 -7 299 353 77 67 chr11 28438660 28439314 -120344158 - L2 LINE L2 -82 3190 2525 2692 105 6 0 chr11 28439760 28440122 -120343350 + THE1B LTR MaLR 1 364 0 2502 79 0 0 chr11 28441032 28441336 -120342136 + AluY SINE Alu 1 304 -7 245 333 48 12 chr11 28442884 28442968 -120340504 - MIR SINE MIR -175 87 1 5655 114 11 23 chr11 28443179 28444903 -120338569 + L1PA10 LINE L1 4413 6105 -63 606 183 0 0 chr11 28444919 28445039 -120338433 + (TA)n Simple_repeat Simple_repeat 1 120 0 391 218 109 13 chr11 28445402 28445558 -120337914 - L1ME LINE L1 -326 5795 5625 1641 179 38 14 chr11 28445936 28446227 -120337245 + AluJo SINE Alu 1 298 -14 321 258 0 32 chr11 28446227 28446320 -120337152 + GA-rich Low_complexity Low_complexity 4 93 0 1003 197 25 7 chr11 28446829 28447103 -120336369 + L1ME1 LINE L1 4993 5271 -875 2162 125 0 22 chr11 28447117 28447436 -120336036 + AluSq SINE Alu 1 312 -1 1852 198 52 9 chr11 28447436 28447896 -120335576 + L1ME1 LINE L1 5313 5792 -374 985 236 24 77 chr11 28448002 28448379 -120335093 + L1ME1 LINE L1 5779 6135 -31 1006 312 78 5 chr11 28448465 28448857 -120334615 + L2 LINE L2 2631 3057 -256 290 165 311 0 chr11 28448892 28448995 -120334477 - MLT1H LTR MaLR 0 555 421 453 230 62 23 chr11 28449046 28449251 -120334221 - MLT1H LTR MaLR -298 232 6 622 229 17 46 chr11 28449325 28449500 -120333972 + L2 LINE L2 3117 3286 -27 192 77 0 0 chr11 28451144 28451170 -120332302 + (T)n Simple_repeat Simple_repeat 1 26 0 329 204 48 36 chr11 28451170 28451337 -120332135 - L1ME LINE L1 -2335 5450 5282 * 41176 46 2 7 chr11 28451323 28457503 -120325969 - L1PA4 LINE L1 0 6155 4 708 211 13 13 chr11 28457510 28457666 -120325806 - MER58B DNA MER1_type -13 328 173 454 325 16 5 chr11 28457862 28458056 -120325416 - MER117 DNA MER1_type -1 196 1 438 70 2 0 chr11 28458097 28458166 -120325306 + THE1C LTR MaLR 1 70 -285 5542 113 28 5 chr11 28458168 28459012 -120324460 + THE1C-int LTR MaLR 717 1580 0 2209 108 61 19 chr11 28459012 28459372 -120324100 + THE1C LTR MaLR 1 375 0 186 261 141 65 chr11 28459442 28459534 -120323938 + MIR SINE MIR 89 187 -75 1694 183 46 39 chr11 28461190 28461579 -120321893 + MLT1D LTR MaLR 1 392 -113 280 184 46 92 chr11 28461642 28461751 -120321721 + Charlie8 DNA MER1_type 38 141 -2276 207 100 0 0 chr11 28461752 28461782 -120321690 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 682 152 32 0 chr11 28462015 28462140 -120321332 + L1MC3 LINE L1 7647 7775 -10 244 253 66 0 chr11 28462140 28462231 -120321241 + Charlie8 DNA MER1_type 420 516 -1901 534 271 33 26 chr11 28462291 28462442 -120321030 - MIR3 SINE MIR -38 170 19 485 260 41 8 chr11 28463410 28463533 -120319939 - MIR SINE MIR -66 142 16 685 271 26 70 chr11 28463616 28463889 -120319583 + MIR SINE MIR 2 262 0 399 280 68 23 chr11 28463887 28464019 -120319453 - MIR SINE MIR -93 169 32 * 202 226 132 0 chr11 28464372 28464425 -120319047 + L3 LINE CR1 883 942 -635 274 326 127 36 chr11 28464650 28464871 -120318601 + L3 LINE CR1 1130 1370 -207 245 271 17 0 chr11 28466700 28466759 -120316713 + MIR3 SINE MIR 114 173 -35 22 56 0 0 chr11 28469232 28469268 -120314204 + AT_rich Low_complexity Low_complexity 1 36 0 1224 276 22 38 chr11 28470559 28471161 -120312311 - L1MDa LINE L1 -3034 3181 2590 1257 80 37 43 chr11 28471203 28471390 -120312082 - AluSg/x SINE Alu -15 297 112 386 101 116 14 chr11 28471402 28471471 -120312001 + Charlie3 DNA MER1_type 2636 2711 0 2594 96 23 35 chr11 28471514 28471948 -120311524 + MER1A DNA MER1_type 61 529 0 339 206 96 55 chr11 28471948 28472147 -120311325 - L1MDa LINE L1 -4417 1979 1773 690 148 25 0 chr11 28472270 28472392 -120311080 + L1PA16 LINE L1 5956 6080 -86 2999 160 69 12 chr11 28472392 28473155 -120310317 - MER21A LTR ERV1 0 931 3 492 145 0 0 chr11 28473155 28473238 -120310234 + L1PA16 LINE L1 6074 6156 -10 567 249 68 89 chr11 28473263 28474059 -120309413 - L1MDa LINE L1 -4624 1591 806 207 260 52 13 chr11 28474328 28474405 -120309067 - MIR SINE MIR -3 259 180 375 309 44 28 chr11 28474646 28474827 -120308645 - MIR3 SINE MIR -21 187 4 637 301 38 9 chr11 28475576 28475789 -120307683 + MIR SINE MIR 32 250 -12 22 0 0 0 chr11 28475798 28475820 -120307652 + AT_rich Low_complexity Low_complexity 1 22 0 192 324 0 29 chr11 28475820 28475888 -120307584 + L2 LINE L2 3207 3272 0 469 249 249 0 chr11 28477576 28477757 -120305715 - MIR SINE MIR -3 259 34 285 323 115 51 chr11 28477919 28478275 -120305197 - L2 LINE L2 0 3313 2935 250 288 50 36 chr11 28478924 28479063 -120304409 - MIR3 SINE MIR -8 200 60 2255 80 0 17 chr11 28479255 28479576 -120303896 + AluY SINE Alu 1 316 0 366 208 94 10 chr11 28480302 28480398 -120303074 - MER117 DNA MER1_type -48 149 46 646 324 45 26 chr11 28480919 28481228 -120302244 - L2 LINE L2 -5 3308 2994 1393 152 46 100 chr11 28481229 28481618 -120301854 + THE1C LTR MaLR 1 368 -7 640 266 122 101 chr11 28481715 28481872 -120301600 + L2 LINE L2 2791 2943 -370 1562 218 7 13 chr11 28481872 28482179 -120301293 - AluJo SINE Alu -7 305 1 640 266 122 101 chr11 28482179 28482515 -120300957 + L2 LINE L2 2943 3295 -18 269 335 122 20 chr11 28483769 28483966 -120299506 + MIR SINE MIR 2 218 -44 1652 171 0 50 chr11 28484815 28485140 -120298332 + AluJb SINE Alu 1 310 0 1732 246 25 23 chr11 28485160 28485672 -120297800 + LTR10D LTR ERV1 1 513 0 189 350 131 25 chr11 28486271 28486431 -120297041 + MIR SINE MIR 35 211 -51 257 345 60 0 chr11 28487630 28487746 -120295726 + Charlie8 DNA MER1_type 138 260 -2157 3421 162 21 28 chr11 28487897 28488401 -120295071 + L1MA4 LINE L1 5521 6027 -273 1790 149 29 60 chr11 28488401 28488749 -120294723 + MER1B DNA MER1_type 1 337 0 3421 162 21 28 chr11 28488749 28488775 -120294697 + L1MA4 LINE L1 6027 6052 -248 2099 135 3 0 chr11 28488775 28489086 -120294386 + AluSx SINE Alu 1 312 0 3421 162 21 28 chr11 28489086 28489272 -120294200 + L1MA4 LINE L1 6052 6233 -67 21 0 0 0 chr11 28490226 28490247 -120293225 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 28490479 28490500 -120292972 + (T)n Simple_repeat Simple_repeat 1 21 0 264 345 54 36 chr11 28491150 28491318 -120292154 - MIR SINE MIR -85 177 7 186 242 32 16 chr11 28491475 28491537 -120291935 - MIR SINE MIR -67 195 133 304 325 69 107 chr11 28492537 28492826 -120290646 + L2 LINE L2 2989 3266 -6 388 267 0 0 chr11 28493325 28493411 -120290061 + MIR3 SINE MIR 77 162 -46 1555 279 80 27 chr11 28493419 28493979 -120289493 + MLT1E LTR MaLR 4 593 0 296 215 15 15 chr11 28494224 28494289 -120289183 + MIR3 SINE MIR 93 157 -51 946 157 73 11 chr11 28494292 28494349 -120289123 + MER5A DNA MER1_type 1 53 -136 6523 24 7 4 chr11 28494349 28495114 -120288358 + L1PA4 LINE L1 5389 6155 0 946 157 73 11 chr11 28495114 28495234 -120288238 + MER5A DNA MER1_type 53 189 0 322 254 97 0 chr11 28495286 28495400 -120288072 - MIR SINE MIR 0 262 138 608 302 104 24 chr11 28496282 28496494 -120286978 - MIR SINE MIR -33 229 1 929 275 45 115 chr11 28496594 28496809 -120286663 - MLT1-int LTR MaLR -233 1138 909 1658 118 118 48 chr11 28496809 28497098 -120286374 + AluSc SINE Alu 1 309 0 929 275 45 115 chr11 28497098 28497395 -120286077 - MLT1-int LTR MaLR -462 909 662 1878 217 35 63 chr11 28497451 28498100 -120285372 - MLT1-int LTR MaLR -714 657 27 841 252 46 82 chr11 28498118 28498417 -120285055 - MLT2C1 LTR ERVL 0 397 116 1994 120 23 33 chr11 28498417 28498717 -120284755 + AluSx SINE Alu 1 297 -15 841 252 46 82 chr11 28498717 28498829 -120284643 - MLT2C1 LTR ERVL -281 116 1 1756 151 17 20 chr11 28498982 28499274 -120284198 + AluJo SINE Alu 1 291 -21 995 114 0 0 chr11 28499345 28499477 -120283995 + AluSp/q SINE Alu 171 302 -11 249 279 0 15 chr11 28500998 28501066 -120282406 - LTR33 LTR ERVL -150 371 305 1248 246 41 22 chr11 28501074 28501436 -120282036 + MLT1A2 LTR MaLR 1 369 -5 596 334 71 19 chr11 28501413 28501721 -120281751 - LTR33 LTR ERVL -197 324 1 * 198 0 0 0 chr11 28501925 28501947 -120281525 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 371 222 33 11 chr11 28502036 28502126 -120281346 + Charlie8 DNA MER1_type 93 184 -2233 378 352 0 0 chr11 28502276 28502381 -120281091 - MIR SINE MIR -59 149 45 1126 230 50 55 chr11 28502436 28502815 -120280657 + L1M4 LINE L1 4753 5129 -1017 25 0 0 0 chr11 28504588 28504613 -120278859 + AT_rich Low_complexity Low_complexity 1 25 0 212 327 88 93 chr11 28504679 28504905 -120278567 - MIR SINE MIR -19 243 19 229 363 22 15 chr11 28505056 28505191 -120278281 - L2 LINE L2 -578 2736 2601 462 310 32 11 chr11 28507550 28507737 -120275735 + MER117 DNA MER1_type 2 192 -5 775 285 72 0 chr11 28507856 28508077 -120275395 - MIR SINE MIR -2 260 24 289 315 0 0 chr11 28508513 28508602 -120274870 - L2 LINE L2 0 3272 3184 251 339 133 23 chr11 28510931 28511149 -120272323 - MIR SINE MIR -3 259 18 291 241 94 94 chr11 28511479 28511670 -120271802 - L1ME LINE L1 -447 5723 5533 401 289 46 61 chr11 28511696 28511893 -120271579 - LTR16C LTR ERVL -1 490 297 661 225 36 20 chr11 28512047 28512296 -120271176 - L1ME LINE L1 -660 5510 5258 1176 285 60 2 chr11 28512296 28512693 -120270779 + MLT1J1 LTR MaLR 1 420 -26 835 291 8 35 chr11 28513594 28513852 -120269620 + MIR SINE MIR 12 262 0 197 349 12 12 chr11 28514402 28514485 -120268987 + L2 LINE L2 3190 3272 0 251 229 21 139 chr11 28514660 28514804 -120268668 + L3 LINE CR1 1392 1518 -59 300 283 40 30 chr11 28514830 28514863 -120268609 - MER5A DNA MER1_type -22 167 136 180 0 0 0 chr11 28514863 28514883 -120268589 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 300 283 40 30 chr11 28514883 28514948 -120268524 - MER5A DNA MER1_type -53 136 68 2977 204 30 49 chr11 28514948 28515816 -120267656 - L1ME2 LINE L1 -11 6153 5270 2392 82 3 0 chr11 28515816 28516109 -120267363 - AluSg SINE Alu -16 294 1 2977 204 30 49 chr11 28516109 28516228 -120267244 - L1ME2 LINE L1 -894 5270 5183 1963 175 18 30 chr11 28516228 28516623 -120266849 + MLT1B LTR MaLR 1 390 0 2977 204 30 49 chr11 28516623 28516685 -120266787 - L1ME2 LINE L1 -981 5183 5121 229 220 0 17 chr11 28516682 28516741 -120266731 - L1ME2 LINE L1 -1295 4851 4794 * 206 269 45 30 chr11 28516741 28516808 -120266664 + MER5B DNA MER1_type 111 178 0 1724 108 17 0 chr11 28516813 28517044 -120266428 + AluSc SINE Alu 61 295 -14 203 295 115 0 chr11 28517491 28517552 -120265920 + L2 LINE L2 3243 3310 -3 420 280 119 18 chr11 28517657 28517825 -120265647 + MIR SINE MIR 14 198 -64 218 309 103 44 chr11 28517826 28517962 -120265510 + L2 LINE L2 3168 3311 -2 180 0 0 0 chr11 28519562 28519582 -120263890 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2414 84 0 0 chr11 28519606 28519902 -120263570 + AluY SINE Alu 1 296 -15 749 266 126 55 chr11 28520340 28520829 -120262643 - MLT1H LTR MaLR -2 547 26 181 172 0 0 chr11 28520906 28520935 -120262537 - L2 LINE L2 -18 3295 3267 189 191 24 24 chr11 28521329 28521371 -120262101 - L3 LINE CR1 -4 1573 1532 223 254 0 36 chr11 28521656 28521711 -120261761 - L2 LINE L2 -8 3264 3212 2211 93 3 6 chr11 28523499 28523831 -120259641 + L1P4 LINE L1 5387 5717 -457 497 269 101 17 chr11 28523831 28524069 -120259403 - MIR SINE MIR -3 259 2 269 368 132 0 chr11 28524950 28525140 -120258332 + MIR SINE MIR 48 262 0 22 35 0 0 chr11 28525869 28525898 -120257574 + AT_rich Low_complexity Low_complexity 1 29 0 754 281 38 21 chr11 28526047 28526190 -120257282 - MIR SINE MIR -2 260 110 1040 245 34 85 chr11 28526190 28526660 -120256812 - MLT1J1 LTR MaLR 0 446 1 754 281 38 21 chr11 28526660 28526754 -120256718 - MIR SINE MIR -152 110 19 517 253 43 105 chr11 28527277 28527559 -120255913 - MIR SINE MIR -16 246 2 446 314 58 11 chr11 28528013 28528204 -120255268 - MIR SINE MIR -59 203 4 3009 269 108 10 chr11 28528836 28529926 -120253546 + L2 LINE L2 1843 3038 -275 1537 280 52 35 chr11 28529957 28530746 -120252726 + L1ME LINE L1 34 835 -5235 3843 76 4 4 chr11 28530794 28531308 -120252164 - L1PA7 LINE L1 -7 6147 5634 40978 33 24 1 chr11 28531323 28537336 -120246136 - L1PA4 LINE L1 -3 6152 1 469 249 249 0 chr11 28537895 28538076 -120245396 - MIR SINE MIR -3 259 34 285 323 115 51 chr11 28538238 28538594 -120244878 - L2 LINE L2 0 3313 2935 250 288 50 36 chr11 28539242 28539381 -120244091 - MIR3 SINE MIR -8 200 60 2255 80 0 17 chr11 28539573 28539894 -120243578 + AluY SINE Alu 1 316 0 366 208 94 10 chr11 28540620 28540716 -120242756 - MER117 DNA MER1_type -48 149 46 670 250 49 11 chr11 28540914 28541098 -120242374 + LTR10B LTR ERV1 315 505 0 189 350 131 25 chr11 28541697 28541857 -120241615 + MIR SINE MIR 35 211 -51 257 345 60 0 chr11 28543056 28543172 -120240300 + Charlie8 DNA MER1_type 138 260 -2157 3756 161 27 27 chr11 28543323 28543826 -120239646 + L1MA4 LINE L1 5521 6023 -277 1790 149 29 60 chr11 28543826 28544174 -120239298 + MER1B DNA MER1_type 1 337 0 3756 161 27 27 chr11 28544174 28544200 -120239272 + L1MA4 LINE L1 6023 6048 -252 2099 135 3 0 chr11 28544200 28544511 -120238961 + AluSx SINE Alu 1 312 0 3756 161 27 27 chr11 28544511 28544760 -120238712 + L1MA4 LINE L1 6047 6300 0 448 293 89 4 chr11 28544772 28545031 -120238441 - L1MEc LINE L1 -4578 2009 1729 2828 130 56 33 chr11 28545049 28545601 -120237871 - L1MA8 LINE L1 -3 6288 5724 862 240 9 0 chr11 28545735 28545964 -120237508 - L1MEc LINE L1 -871 5535 5305 1757 268 80 17 chr11 28545981 28546567 -120236905 + MER76 LTR ERV 32 654 -34 1018 232 20 10 chr11 28546571 28546868 -120236604 - L1MEc LINE L1 -1098 5308 5009 1921 268 50 12 chr11 28546871 28547838 -120235634 - L1MEc LINE L1 -2191 4215 3213 1258 181 5 5 chr11 28547853 28548063 -120235409 - AluJb SINE Alu -23 289 80 1209 252 12 26 chr11 28548065 28548707 -120234765 - L1MEc LINE L1 -3187 3219 2475 1110 264 94 15 chr11 28548809 28549138 -120234334 - L1MEc LINE L1 -6045 364 10 53 30 0 0 chr11 28549276 28549343 -120234129 + AT_rich Low_complexity Low_complexity 1 67 0 2604 99 14 8 chr11 28550152 28550514 -120232958 + THE1B LTR MaLR 1 364 0 2286 74 0 3 chr11 28551266 28551550 -120231922 + AluY SINE Alu 1 283 -28 468 0 0 0 chr11 28551550 28551602 -120231870 + (TA)n Simple_repeat Simple_repeat 2 53 0 303 293 68 54 chr11 28551602 28551749 -120231723 - L2 LINE L2 -10 3303 3155 1936 209 41 58 chr11 28552007 28552520 -120230952 - MLT1D LTR MaLR 0 505 2 1377 220 23 54 chr11 28552687 28553073 -120230399 + MLT1A2 LTR MaLR 1 374 0 2016 164 41 37 chr11 28555162 28555717 -120227755 - MLT2A2 LTR ERVL -1 553 1 184 247 169 52 chr11 28556918 28556995 -120226477 + MIR SINE MIR 3 88 -174 537 16 0 0 chr11 28557147 28557209 -120226263 + (TC)n Simple_repeat Simple_repeat 1 62 0 189 0 0 0 chr11 28557208 28557229 -120226243 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 998 258 96 41 chr11 28557405 28557823 -120225649 - MLT1J1 LTR MaLR -5 441 1 882 196 93 10 chr11 28558958 28559162 -120224310 - MER58A DNA MER1_type 0 224 4 1603 155 101 4 chr11 28559231 28559509 -120223963 - AluSx SINE Alu -7 305 1 2839 149 61 31 chr11 28559523 28560099 -120223373 + LTR59 LTR ERV1 1 593 -4 811 272 87 8 chr11 28560324 28560578 -120222894 - MLT1J1 LTR MaLR -129 317 44 2368 92 0 0 chr11 28561300 28561594 -120221878 - AluSg SINE Alu -16 294 1 427 269 25 8 chr11 28561898 28562017 -120221455 - MIR SINE MIR -50 212 92 856 210 11 0 chr11 28562104 28562280 -120221192 - MIR SINE MIR -6 256 79 576 294 62 31 chr11 28562544 28562629 -120220843 + MIR3 SINE MIR 2 83 -125 1715 206 19 16 chr11 28562629 28562993 -120220479 + MLT1A1 LTR MaLR 1 365 0 576 294 62 31 chr11 28562993 28563101 -120220371 + MIR3 SINE MIR 83 201 -7 24 32 0 0 chr11 28563356 28563387 -120220085 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr11 28563602 28563654 -120219818 + AT_rich Low_complexity Low_complexity 1 52 0 209 341 80 0 chr11 28564117 28564205 -120219267 - L2 LINE L2 -35 3237 3143 915 226 0 0 chr11 28566871 28567035 -120216437 - AluJb SINE Alu -15 297 134 263 343 38 9 chr11 28567908 28568013 -120215459 + L2 LINE L2 2890 2997 -275 2815 249 200 49 chr11 28568210 28569193 -120214279 - L2 LINE L2 -428 2886 1672 2190 123 3 3 chr11 28569193 28569503 -120213969 - AluSx SINE Alu -2 310 1 2815 249 200 49 chr11 28569503 28569770 -120213702 - L2 LINE L2 -1642 1672 1447 240 349 12 12 chr11 28570085 28570168 -120213304 - L2 LINE L2 -2143 1171 1089 28 29 0 0 chr11 28570299 28570334 -120213138 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr11 28570533 28570565 -120212907 + AT_rich Low_complexity Low_complexity 1 32 0 2266 168 67 112 chr11 28570600 28571361 -120212111 + LTR8A LTR ERV1 1 727 0 1743 174 0 20 chr11 28571425 28571724 -120211748 - AluSx SINE Alu -19 293 1 343 264 248 8 chr11 28571725 28571846 -120211626 - MIR SINE MIR -84 178 29 679 271 69 92 chr11 28572292 28572826 -120210646 + LTR33A LTR ERVL 2 523 0 575 102 51 0 chr11 28573439 28573576 -120209896 + (TA)n Simple_repeat Simple_repeat 1 144 0 1925 166 0 3 chr11 28573576 28573865 -120209607 - AluSx SINE Alu -24 288 1 44 84 0 0 chr11 28573983 28574090 -120209382 + AT_rich Low_complexity Low_complexity 1 107 0 1358 163 51 26 chr11 28574179 28574492 -120208980 + MER33 DNA MER1_type 4 324 0 584 318 37 0 chr11 28575374 28575591 -120207881 - MIR SINE MIR -10 252 28 861 259 31 22 chr11 28575889 28576117 -120207355 - MIR SINE MIR -30 232 3 489 306 40 25 chr11 28576412 28576750 -120206722 + MLT1I LTR MaLR 62 407 -2 427 184 40 0 chr11 28577661 28577737 -120205735 + AluJo SINE Alu 56 134 -178 804 270 126 51 chr11 28577927 28578397 -120205075 + MLT1J LTR MaLR 1 505 -6 2111 77 35 0 chr11 28578402 28578688 -120204784 + L1PA7 LINE L1 5851 6146 -8 773 200 0 0 chr11 28578706 28578836 -120204636 + FLAM_C SINE Alu 1 130 -3 2051 136 55 3 chr11 28580508 28580853 -120202619 + L1PA16 LINE L1 5794 6156 -10 2335 98 0 0 chr11 28580879 28581184 -120202288 + AluSc SINE Alu 5 309 0 182 36 0 36 chr11 28581243 28581271 -120202201 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 485 216 0 65 chr11 28581886 28582025 -120201447 + L1M2 LINE L1 5663 5792 -520 183 156 0 0 chr11 28582042 28582074 -120201398 + (TA)n Simple_repeat Simple_repeat 1 32 0 2840 183 14 58 chr11 28582105 28582745 -120200727 + LTR9 LTR ERV1 1 612 0 198 103 0 0 chr11 28582815 28582844 -120200628 + (TG)n Simple_repeat Simple_repeat 2 30 0 301 187 0 67 chr11 28582844 28582919 -120200553 + L1MCa LINE L1 1995 2064 -4362 549 58 0 47 chr11 28582934 28583020 -120200452 - L1MA9 LINE L1 -435 5877 5796 1089 158 27 0 chr11 28583062 28583246 -120200226 + MER5A DNA MER1_type 1 189 0 5029 98 6 39 chr11 28583541 28583983 -120199489 + L1PA15 LINE L1 5379 5783 -382 429 20 0 0 chr11 28583983 28584033 -120199439 + (TG)n Simple_repeat Simple_repeat 1 50 0 5029 98 6 39 chr11 28584033 28584403 -120199069 + L1PA15 LINE L1 5783 6164 -1 547 207 171 0 chr11 28584695 28584835 -120198637 - MER5A DNA MER1_type 0 189 26 250 270 17 25 chr11 28584846 28584953 -120198519 - MLT1I LTR MaLR -267 142 45 1621 166 25 135 chr11 28584993 28585518 -120197954 + MLT1D LTR MaLR 39 505 0 224 348 45 11 chr11 28585923 28586012 -120197460 - MIR SINE MIR -100 108 17 1986 131 7 0 chr11 28586232 28586548 -120196924 - AluSx SINE Alu 0 318 1 474 260 110 24 chr11 28586548 28586794 -120196678 - L1ME4a LINE L1 -232 5889 5623 684 74 28 0 chr11 28586797 28586905 -120196567 + (TA)n Simple_repeat Simple_repeat 2 112 0 323 121 17 0 chr11 28586963 28587021 -120196451 + (TA)n Simple_repeat Simple_repeat 1 59 0 328 309 159 14 chr11 28587076 28587283 -120196189 - L1ME4a LINE L1 -2255 5553 5317 21 36 0 0 chr11 28587302 28587330 -120196142 + AT_rich Low_complexity Low_complexity 1 28 0 1712 108 0 0 chr11 28589086 28589318 -120194154 - AluY SINE Alu -11 300 69 399 319 102 0 chr11 28589872 28590107 -120193365 + LTR16A LTR ERVL 13 271 -179 802 279 74 5 chr11 28590271 28590522 -120192950 - MIR SINE MIR -7 255 7 306 308 48 0 chr11 28590608 28590712 -120192760 + L2 LINE L2 3163 3271 -1 24 32 0 0 chr11 28591224 28591255 -120192217 + AT_rich Low_complexity Low_complexity 1 31 0 255 285 101 70 chr11 28591724 28591949 -120191523 + MIR3 SINE MIR 12 246 -16 1974 154 3 7 chr11 28592695 28592993 -120190479 + AluJo SINE Alu 1 297 -15 373 317 35 21 chr11 28593781 28593926 -120189546 - L2 LINE L2 -1 3271 3125 2327 122 42 19 chr11 28594586 28594964 -120188508 + MLT1B LTR MaLR 1 387 -3 2077 122 7 0 chr11 28595003 28595319 -120188153 + AluSc SINE Alu 1 318 0 500 321 138 49 chr11 28595726 28596391 -120187081 + L2 LINE L2 2584 3313 0 2691 173 27 29 chr11 28596689 28597205 -120186267 - MLT2B2 LTR ERVL 0 515 1 269 221 107 82 chr11 28597525 28597656 -120185816 + MIR SINE MIR 18 152 -68 228 303 45 0 chr11 28598001 28598067 -120185405 + MLT1J LTR MaLR 104 172 -339 278 225 99 86 chr11 28598109 28598260 -120185212 + MLT1L LTR MaLR 450 602 -13 1341 159 55 14 chr11 28598271 28598560 -120184912 - MLT1D LTR MaLR -3 502 202 1803 10 0 0 chr11 28598600 28598809 -120184663 - L1PA2 LINE L1 -485 5670 5462 4180 34 0 8 chr11 28598809 28599302 -120184170 + L1PA2 LINE L1 5653 6155 0 568 182 0 125 chr11 28599309 28599501 -120183971 - MLT1D LTR MaLR -337 168 1 237 325 150 0 chr11 28599578 28599698 -120183774 + MIR3 SINE MIR 4 141 -67 455 227 241 64 chr11 28599790 28599859 -120183613 + MLT1H LTR MaLR 1 56 -493 1865 212 73 9 chr11 28599859 28600298 -120183174 + MLT1C LTR MaLR 1 467 0 455 227 241 64 chr11 28600298 28600681 -120182791 + MLT1H LTR MaLR 56 533 -16 383 351 23 17 chr11 28600874 28601048 -120182424 + MIR SINE MIR 18 192 -70 291 258 22 0 chr11 28601242 28601331 -120182141 + (TA)n Simple_repeat Simple_repeat 1 91 0 1028 31 78 0 chr11 28602633 28602762 -120180710 + MER85 DNA T2_type 1 139 0 1671 207 168 15 chr11 28602924 28603464 -120180008 - MLT1G LTR MaLR -11 579 1 231 310 78 78 chr11 28603667 28603783 -120179689 - L2 LINE L2 -53 3219 3104 422 340 31 27 chr11 28604051 28604307 -120179165 - L2 LINE L2 -527 2787 2531 254 324 14 0 chr11 28604317 28604388 -120179084 + MIR SINE MIR 188 259 -3 497 291 72 29 chr11 28604422 28604700 -120178772 - L2 LINE L2 -801 2513 2224 309 339 73 54 chr11 28605639 28605952 -120177520 + L3 LINE CR1 616 934 -643 553 221 90 0 chr11 28606017 28606162 -120177310 + MER103 DNA DNA 4 161 -5 180 307 93 53 chr11 28606219 28606369 -120177103 + L3 LINE CR1 906 1061 -516 454 278 20 53 chr11 28606424 28606544 -120176928 - MIR SINE MIR -105 157 41 2188 113 51 25 chr11 28606544 28606899 -120176573 + THE1B LTR MaLR 1 364 0 454 278 20 53 chr11 28606899 28606929 -120176543 - MIR SINE MIR -221 41 12 212 221 13 0 chr11 28607691 28607768 -120175704 + (TA)n Simple_repeat Simple_repeat 1 78 0 934 209 40 0 chr11 28607812 28608013 -120175459 + MER3 DNA MER1_type 1 209 0 2232 142 14 5 chr11 28608289 28608656 -120174816 + L1PA15 LINE L1 5793 6162 -3 1003 197 25 7 chr11 28609380 28609654 -120173818 + L1ME1 LINE L1 4993 5271 -875 2162 125 0 22 chr11 28609668 28609987 -120173485 + AluSq SINE Alu 1 312 -1 1852 198 52 9 chr11 28609987 28610447 -120173025 + L1ME1 LINE L1 5313 5792 -374 985 236 24 77 chr11 28610553 28610930 -120172542 + L1ME1 LINE L1 5779 6135 -31 1006 312 78 5 chr11 28611016 28611408 -120172064 + L2 LINE L2 2631 3057 -256 312 179 286 0 chr11 28611443 28611555 -120171917 - MLT1H1 LTR MaLR 0 555 412 339 205 0 0 chr11 28611745 28611828 -120171644 - L1M4 LINE L1 -941 5205 5123 3934 24 0 0 chr11 28611828 28612288 -120171184 + L1PA2 LINE L1 5693 6152 -3 971 180 35 2 chr11 28612295 28612867 -120170605 + L1MD2 LINE L1 5295 5975 -267 1266 208 13 20 chr11 28612873 28613176 -120170296 + L1MD2 LINE L1 6043 6343 -16 1428 239 3 27 chr11 28613350 28613684 -120169788 + MLT1I LTR MaLR 84 409 0 249 57 0 0 chr11 28614840 28614875 -120168597 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 336 271 42 0 chr11 28615659 28615755 -120167717 + MIR3 SINE MIR 98 197 -11 727 195 6 198 chr11 28616621 28616944 -120166528 + MIR SINE MIR 2 262 0 6791 24 12 2 chr11 28617089 28617941 -120165531 - L1PA4 LINE L1 -11 6144 5285 806 240 111 11 chr11 28618932 28619203 -120164269 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 28619609 28619630 -120163842 + AT_rich Low_complexity Low_complexity 1 21 0 40760 31 23 5 chr11 28619634 28625681 -120157791 - L1PA3 LINE L1 0 6155 3 285 287 127 32 chr11 28626003 28626296 -120157176 + L2 LINE L2 2679 3008 -264 812 216 38 24 chr11 28626296 28626509 -120156963 - MER20 DNA MER1_type -3 216 1 285 287 127 32 chr11 28626509 28626591 -120156881 + L2 LINE L2 3008 3081 -191 3236 141 41 38 chr11 28626717 28627117 -120156355 - Tigger2 DNA MER2_type -2058 660 256 1663 151 54 0 chr11 28627117 28627395 -120156077 - AluJb SINE Alu -19 293 1 3236 141 41 38 chr11 28627395 28627652 -120155820 - Tigger2 DNA MER2_type -2462 256 1 18006 67 10 3 chr11 28627863 28631713 -120151759 - L1PA7 LINE L1 0 6154 2283 180 0 0 0 chr11 28632455 28632475 -120150997 + (A)n Simple_repeat Simple_repeat 1 20 0 312 176 0 0 chr11 28632628 28632696 -120150776 + (TA)n Simple_repeat Simple_repeat 1 68 0 1875 184 82 64 chr11 28632869 28633403 -120150069 + MER89 LTR ERV1 2 545 -14 285 261 157 15 chr11 28633472 28633740 -120149732 - HAL1b LINE L1 -29 1319 1014 368 242 8 0 chr11 28633747 28633879 -120149593 + (TA)n Simple_repeat Simple_repeat 2 134 0 234 311 31 31 chr11 28633891 28634148 -120149324 - HAL1b LINE L1 -345 1003 747 261 229 0 16 chr11 28634201 28634262 -120149210 + CT-rich Low_complexity Low_complexity 3 62 0 2358 90 3 6 chr11 28634206 28634580 -120148892 - AluSx SINE Alu 0 373 1 540 297 57 6 chr11 28634647 28634822 -120148650 - MIR SINE MIR -39 223 40 595 264 28 60 chr11 28634822 28634906 -120148566 - HAL1b LINE L1 -558 790 705 2230 119 132 8 chr11 28634906 28635285 -120148187 + MSTA LTR MaLR 3 428 0 595 264 28 60 chr11 28635285 28635552 -120147920 - HAL1b LINE L1 -643 705 450 438 266 92 41 chr11 28635637 28635953 -120147519 - HAL1b LINE L1 -739 609 278 21 0 0 0 chr11 28636337 28636358 -120147114 + AT_rich Low_complexity Low_complexity 1 21 0 312 231 0 0 chr11 28636546 28636624 -120146848 + CT-rich Low_complexity Low_complexity 3 80 0 212 267 0 0 chr11 28637143 28637203 -120146269 + T-rich Low_complexity Low_complexity 1 60 0 589 240 58 7 chr11 28637571 28637725 -120145747 + MIR SINE MIR 84 245 -17 978 278 38 59 chr11 28637980 28638423 -120145049 - LTR16A LTR ERVL 0 450 17 283 274 0 0 chr11 28638725 28638798 -120144674 + (TA)n Simple_repeat Simple_repeat 1 73 0 850 245 25 0 chr11 28639009 28639205 -120144267 + MIR SINE MIR 2 202 -60 2069 127 127 21 chr11 28639573 28639958 -120143514 - MSTA LTR MaLR -2 426 1 2285 245 32 5 chr11 28641079 28641639 -120141833 + MER82 DNA MER2_type 79 653 0 366 358 47 34 chr11 28641809 28641957 -120141515 - MIR3 SINE MIR -52 156 7 21 57 0 0 chr11 28642284 28642319 -120141153 + AT_rich Low_complexity Low_complexity 1 35 0 254 330 45 0 chr11 28643558 28643646 -120139826 + MIR SINE MIR 127 218 -44 955 259 121 47 chr11 28643646 28644110 -120139362 - MLT1F1 LTR MaLR 0 567 70 653 264 128 22 chr11 28644271 28644498 -120138974 - MIR SINE MIR -9 253 3 207 264 309 9 chr11 28644730 28644840 -120138632 + MIR3 SINE MIR 1 143 -65 2541 211 40 42 chr11 28644851 28645597 -120137875 + L1MA9 LINE L1 5530 6274 -38 722 270 47 47 chr11 28645703 28645936 -120137536 - MIR SINE MIR -26 236 4 273 221 18 0 chr11 28646074 28646138 -120137334 + MIR SINE MIR 72 137 -71 976 195 0 0 chr11 28646464 28646628 -120136844 - FRAM SINE Alu -15 161 1 873 253 34 17 chr11 28646767 28647004 -120136468 + MIR SINE MIR 22 262 0 199 0 65 0 chr11 28647245 28647276 -120136196 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 280 219 171 85 chr11 28649574 28649738 -120133734 - L2 LINE L2 -1 3312 3135 778 151 22 170 chr11 28649819 28650137 -120133335 + L1MA10 LINE L1 6062 6332 -2 1964 121 4 7 chr11 28650186 28650496 -120132976 - AluSc SINE Alu 0 309 1 1193 248 55 12 chr11 28650737 28651136 -120132336 - L1MB7 LINE L1 -18 6166 5751 772 109 31 0 chr11 28651139 28651267 -120132205 - LTR54 LTR ERV1 0 510 379 337 301 27 48 chr11 28651299 28651445 -120132027 - L1M4c LINE L1 -4208 2438 2296 880 254 36 0 chr11 28651469 28651744 -120131728 - L1M4c LINE L1 -4488 2158 1874 35142 90 12 7 chr11 28651759 28656977 -120126495 + L1P LINE L1 11 5254 -892 1186 58 0 0 chr11 28656977 28657127 -120126345 + L1PA6 LINE L1 6000 6153 -1 5443 218 63 41 chr11 28657128 28658944 -120124528 - L1M4c LINE L1 -4768 1878 23 1147 315 122 4 chr11 28659058 28659576 -120123896 - L2 LINE L2 -961 2353 1775 285 248 14 117 chr11 28659709 28659854 -120123618 - MIR SINE MIR -46 216 87 7627 28 14 0 chr11 28660285 28661548 -120121924 - L1PA4 LINE L1 0 6155 4889 40447 37 22 1 chr11 28662281 28668346 -120115126 + L1PA3 LINE L1 1 6191 0 361 315 0 0 chr11 28669204 28669293 -120114179 + polypyrimidine Low_complexity Low_complexity 4 92 0 237 200 36 18 chr11 28669572 28669627 -120113845 + MLT1K LTR MaLR 162 217 -371 374 225 38 75 chr11 28669760 28669920 -120113552 + MLT1K LTR MaLR 435 588 0 21 0 0 0 chr11 28670023 28670044 -120113428 + AT_rich Low_complexity Low_complexity 1 21 0 444 273 109 48 chr11 28671122 28671185 -120112287 - MLT1J1 LTR MaLR -132 314 256 2180 89 13 0 chr11 28671185 28671488 -120111984 + L1PA11 LINE L1 5867 6173 -1 444 273 109 48 chr11 28671488 28671674 -120111798 - MLT1J1 LTR MaLR -190 256 65 498 239 0 23 chr11 28672088 28672218 -120111254 - LTR18B LTR ERVL -2 612 486 231 250 0 0 chr11 28672210 28672270 -120111202 - LTR18B LTR ERVL -422 192 133 * 9743 186 34 7 chr11 28672315 28674163 -120109309 - HERVL18 LTR ERVL -4146 1901 4 1967 166 72 107 chr11 28674198 28674806 -120108666 - LTR18B LTR ERVL -27 587 1 233 295 86 38 chr11 28674959 28675064 -120108408 + MIR SINE MIR 34 143 -65 518 248 110 34 chr11 28675118 28675352 -120108120 + MLT1E1 LTR MaLR 283 611 -43 339 257 15 139 chr11 28675970 28676172 -120107300 - L2 LINE L2 -211 3061 2885 255 278 100 92 chr11 28676255 28676536 -120106936 - MER102a DNA MER1_type -16 314 32 1395 184 27 51 chr11 28676683 28676976 -120106496 + AluJo SINE Alu 1 286 -26 1712 200 78 42 chr11 28676983 28677330 -120106142 - MER67D LTR ERV1 -5 509 141 2976 123 5 0 chr11 28677330 28677762 -120105710 + MER57B LTR ERV1 1 434 0 1712 200 78 42 chr11 28677762 28677864 -120105608 - MER67D LTR ERV1 -373 141 44 2061 116 3 0 chr11 28677864 28678148 -120105324 + AluSx SINE Alu 1 285 -27 201 196 0 0 chr11 28678148 28678194 -120105278 + (CA)n Simple_repeat Simple_repeat 1 46 0 211 200 22 0 chr11 28678242 28678287 -120105185 - L2 LINE L2 -661 2653 2608 663 193 84 101 chr11 28678450 28678807 -120104665 + LTR37A LTR ERV1 76 426 0 406 334 96 35 chr11 28678839 28679267 -120104205 - L2 LINE L2 -780 2534 2081 1128 99 0 12 chr11 28679369 28679614 -120103858 + (TTC)n Simple_repeat Simple_repeat 1 242 0 2121 130 0 0 chr11 28679619 28679912 -120103560 - AluSx SINE Alu -1 311 19 409 351 43 19 chr11 28680021 28680229 -120103243 + MIR SINE MIR 30 242 -20 242 203 0 16 chr11 28681609 28681673 -120101799 + CT-rich Low_complexity Low_complexity 4 66 0 702 304 181 23 chr11 28681673 28682294 -120101178 - L2 LINE L2 -5 3308 2593 1644 237 5 11 chr11 28683584 28683951 -120099521 - MLT1A1 LTR MaLR 0 365 1 2043 118 81 29 chr11 28684194 28684540 -120098932 + THE1B LTR MaLR 1 364 0 4668 73 3 0 chr11 28684540 28685173 -120098299 + THE1B-int LTR MaLR 1 635 -945 610 234 31 72 chr11 28685173 28685395 -120098077 - MLT1D LTR MaLR -292 213 1 4195 93 3 2 chr11 28685539 28686128 -120097344 - L1PA14 LINE L1 -2 6159 5570 219 309 0 0 chr11 28686192 28686247 -120097225 + L2 LINE L2 2999 3053 -219 2413 149 34 16 chr11 28686559 28687003 -120096469 - Tigger2 DNA MER2_type 0 2718 2267 381 167 0 0 chr11 28686988 28687054 -120096418 - Tigger2 DNA MER2_type -2650 68 3 * 372 358 93 0 chr11 28687070 28687221 -120096251 - MIR SINE MIR -70 192 28 22 56 0 0 chr11 28688021 28688057 -120095415 + AT_rich Low_complexity Low_complexity 1 36 0 452 306 41 6 chr11 28688338 28688508 -120094964 - MIR SINE MIR -44 218 43 367 210 72 73 chr11 28688604 28688823 -120094649 + MER92C LTR ERV1 1 213 -423 746 196 36 94 chr11 28689304 28689580 -120093892 + MER31-int LTR ERV1 1028 1287 -3649 269 204 0 0 chr11 28690960 28691009 -120092463 + MER92C LTR ERV1 1 49 -505 323 211 0 0 chr11 28691187 28691258 -120092214 + MER92C LTR ERV1 484 554 0 546 278 117 6 chr11 28691260 28691422 -120092050 - MIR SINE MIR -67 195 16 21 0 0 0 chr11 28691828 28691849 -120091623 + AT_rich Low_complexity Low_complexity 1 21 0 2686 26 0 3 chr11 28692617 28692925 -120090547 - AluYa5 SINE Alu -4 307 1 475 324 236 0 chr11 28694180 28694455 -120089017 + L2 LINE L2 2973 3312 -1 1210 196 0 0 chr11 28694784 28695013 -120088459 - MER46A DNA MER2_type -5 231 3 1336 209 26 32 chr11 28695015 28695359 -120088113 - MLT1A2 LTR MaLR -32 342 1 270 320 51 26 chr11 28695437 28695603 -120087869 - MIR SINE MIR -63 145 24 231 319 135 53 chr11 28697346 28697553 -120085919 + L2 LINE L2 3031 3254 -18 2017 178 11 14 chr11 28697592 28697958 -120085514 + MLT1A1 LTR MaLR 1 365 0 184 350 179 26 chr11 28698337 28698454 -120085018 - L2 LINE L2 -32 3240 3106 1558 164 9 73 chr11 28698747 28699064 -120084408 + AluJo SINE Alu 1 297 -15 533 289 0 54 chr11 28699624 28699828 -120083644 + MIR SINE MIR 60 252 -10 330 45 0 0 chr11 28700931 28700975 -120082497 + (TG)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr11 28701025 28701047 -120082425 + (T)n Simple_repeat Simple_repeat 1 22 0 386 231 28 35 chr11 28701322 28701465 -120082007 + LTR43 LTR ERV1 170 311 -291 21 36 0 0 chr11 28702402 28702430 -120081042 + GC_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr11 28702958 28702981 -120080491 + (T)n Simple_repeat Simple_repeat 1 23 0 258 116 0 0 chr11 28703473 28703516 -120079956 + (TC)n Simple_repeat Simple_repeat 2 44 0 218 103 0 26 chr11 28703827 28703866 -120079606 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 383 293 41 34 chr11 28705382 28705529 -120077943 - MIR SINE MIR -1 261 114 318 87 0 0 chr11 28707205 28707251 -120076221 + (GGA)n Simple_repeat Simple_repeat 2 47 0 252 86 0 0 chr11 28709092 28709127 -120074345 + (TG)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 28709354 28709377 -120074095 + AT_rich Low_complexity Low_complexity 1 23 0 218 309 32 48 chr11 28710776 28710902 -120072570 + MIR SINE MIR 69 192 -70 219 139 0 0 chr11 28711437 28711473 -120071999 + (T)n Simple_repeat Simple_repeat 1 36 0 192 337 71 10 chr11 28712144 28712195 -120071277 + MIR3 SINE MIR 76 122 -86 267 31 0 0 chr11 28712195 28712227 -120071245 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 337 71 10 chr11 28712227 28712273 -120071199 + MIR3 SINE MIR 122 179 -29 23 68 0 0 chr11 28714641 28714685 -120068787 + AT_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chr11 28717020 28717047 -120066425 + (CTG)n Simple_repeat Simple_repeat 2 28 0 2739 7 0 0 chr11 28718683 28718980 -120064492 - AluYa5 SINE Alu -14 297 1 885 209 47 29 chr11 28720674 28720951 -120062521 + L1MA7 LINE L1 6010 6291 0 24 32 0 0 chr11 28721849 28721880 -120061592 + AT_rich Low_complexity Low_complexity 1 31 0 1721 134 51 16 chr11 28723025 28723339 -120060133 - MER44D DNA MER2_type -14 595 1 23 54 0 0 chr11 28723597 28723634 -120059838 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr11 28724073 28724111 -120059361 + AT_rich Low_complexity Low_complexity 1 38 0 475 275 112 71 chr11 28725664 28726048 -120057424 - MLT1H LTR MaLR -95 454 12 33 0 0 0 chr11 28726257 28726290 -120057182 + AT_rich Low_complexity Low_complexity 1 33 0 421 228 60 13 chr11 28728330 28728346 -120055126 - L1MA10 LINE L1 0 6334 6319 883 243 116 34 chr11 28728346 28728733 -120054739 - L1ME1 LINE L1 -5 6161 5743 219 333 0 11 chr11 28729506 28729596 -120053876 + CT-rich Low_complexity Low_complexity 2 90 0 246 220 0 0 chr11 28729902 28729961 -120053511 + (TA)n Simple_repeat Simple_repeat 1 59 0 192 277 169 15 chr11 28730708 28730773 -120052699 - L2 LINE L2 -80 3192 3118 213 65 0 0 chr11 28731814 28731845 -120051627 + (T)n Simple_repeat Simple_repeat 1 31 0 324 233 41 0 chr11 28731982 28732055 -120051417 + MIR SINE MIR 186 261 -1 2268 140 138 0 chr11 28732283 28732719 -120050753 - MLT1D LTR MaLR -3 502 7 181 309 103 0 chr11 28733690 28733758 -120049714 - L2 LINE L2 -12 3301 3227 366 352 38 19 chr11 28733789 28734002 -120049470 + MIR SINE MIR 40 256 -6 245 180 0 0 chr11 28735067 28735117 -120048355 + L1MC4 LINE L1 6654 6703 -1339 192 254 0 0 chr11 28735117 28735176 -120048296 + (TA)n Simple_repeat Simple_repeat 2 60 0 1905 143 50 28 chr11 28736220 28736584 -120046888 + THE1C LTR MaLR 4 375 0 316 206 11 11 chr11 28737004 28737096 -120046376 + (TA)n Simple_repeat Simple_repeat 2 93 0 351 208 52 0 chr11 28737173 28737269 -120046203 + MER103 DNA DNA 19 119 -47 349 181 14 0 chr11 28737525 28737597 -120045875 - MER5A DNA MER1_type -89 100 28 644 291 23 45 chr11 28740790 28740958 -120042514 - MIR SINE MIR 0 262 101 2167 103 86 12 chr11 28740958 28741297 -120042175 - THE1B LTR MaLR 0 364 1 644 291 23 45 chr11 28741297 28741393 -120042079 - MIR SINE MIR -161 101 4 2209 140 2 18 chr11 28742187 28742587 -120040885 - HERVH LTR ERV1 -3828 3885 3492 812 143 27 0 chr11 28742577 28742724 -120040748 - HERVH LTR ERV1 -4423 3290 3140 * 13084 116 16 25 chr11 28742703 28744771 -120038701 - HERVH LTR ERV1 -4718 2995 642 2802 26 0 0 chr11 28744771 28745084 -120038388 + AluYb8 SINE Alu 1 313 -5 13084 116 16 25 chr11 28745084 28745721 -120037751 - HERVH LTR ERV1 -7071 642 1 1048 81 52 12 chr11 28745723 28745896 -120037576 - LTR7 LTR ERV1 -2 448 269 814 96 0 16 chr11 28745899 28746024 -120037448 + LTR7 LTR ERV1 1 123 -327 679 208 0 0 chr11 28746395 28746525 -120036947 + MLT1F1 LTR MaLR 5 134 -433 754 227 0 0 chr11 28746525 28746657 -120036815 + FLAM_A SINE Alu 1 132 -10 1476 261 89 12 chr11 28746660 28747077 -120036395 + MLT1F1 LTR MaLR 119 567 0 2452 103 3 0 chr11 28747276 28747588 -120035884 + AluSp SINE Alu 1 313 0 401 297 80 0 chr11 28747672 28747810 -120035662 + MIR SINE MIR 4 152 -110 330 115 0 0 chr11 28748185 28748237 -120035235 + (CA)n Simple_repeat Simple_repeat 1 52 0 969 198 50 0 chr11 28749089 28749291 -120034181 - MER20 DNA MER1_type -4 215 4 437 333 67 13 chr11 28749306 28749531 -120033941 - MLT1K LTR MaLR -35 553 317 727 173 0 43 chr11 28749574 28749713 -120033759 + AluJb SINE Alu 164 296 -16 483 248 14 43 chr11 28751038 28751179 -120032293 + MIR SINE MIR 124 260 -2 342 267 32 72 chr11 28751477 28751666 -120031806 - MIR SINE MIR -61 147 3 259 369 10 0 chr11 28753048 28753151 -120030321 + MIR3 SINE MIR 54 157 -51 526 275 110 0 chr11 28753329 28753511 -120029961 - L2 LINE L2 0 3313 3112 27 29 0 0 chr11 28754155 28754189 -120029283 + AT_rich Low_complexity Low_complexity 1 34 0 2597 215 43 38 chr11 28754205 28754949 -120028523 + Charlie1a DNA MER1_type 1 748 -707 4203 183 62 21 chr11 28754949 28756221 -120027251 - L1MC2 LINE L1 -6 6338 5023 1329 241 137 7 chr11 28756346 28756885 -120026587 + L1M4 LINE L1 3593 4201 -1945 448 185 0 29 chr11 28756910 28757083 -120026389 + (TA)n Simple_repeat Simple_repeat 1 168 0 984 253 32 42 chr11 28757107 28757610 -120025862 + L1M4 LINE L1 4205 4702 -1444 12488 28 5 0 chr11 28757610 28759173 -120024299 - L1PA3 LINE L1 -883 5263 3693 6275 37 4 5 chr11 28759164 28759975 -120023497 + L1PA3 LINE L1 5254 6063 -92 * 183 342 139 30 chr11 28760445 28760840 -120022632 - L2 LINE L2 -578 2736 2299 645 299 40 26 chr11 28761155 28761503 -120021969 - L1MC/D LINE L1 -2038 5770 5418 259 346 110 0 chr11 28761743 28761870 -120021602 + MIR SINE MIR 48 188 -74 309 275 46 0 chr11 28763203 28763312 -120020160 + MER117 DNA MER1_type 44 157 -40 299 279 91 39 chr11 28763730 28763884 -120019588 + L2 LINE L2 3152 3313 0 21 0 0 0 chr11 28763982 28764003 -120019469 + AT_rich Low_complexity Low_complexity 1 21 0 2597 52 0 0 chr11 28764005 28764313 -120019159 + AluY SINE Alu 1 308 -3 45 29 0 14 chr11 28765084 28765121 -120018351 + AT_rich Low_complexity Low_complexity 1 38 -31 1316 146 9 162 chr11 28765121 28765449 -120018023 + AluJo SINE Alu 5 282 -30 45 29 0 14 chr11 28765449 28765481 -120017991 + AT_rich Low_complexity Low_complexity 38 69 0 189 325 38 25 chr11 28765686 28765766 -120017706 - MIR3 SINE MIR -5 203 123 307 331 45 32 chr11 28766240 28766397 -120017075 - MIR3 SINE MIR -47 161 3 240 274 68 48 chr11 28766534 28766680 -120016792 + MIR SINE MIR 114 262 0 611 326 98 45 chr11 28766792 28767314 -120016158 - L2 LINE L2 -1 3312 2765 230 313 113 0 chr11 28767940 28768055 -120015417 + MER117 DNA MER1_type 39 166 -31 908 303 98 23 chr11 28768480 28768958 -120014514 + LTR33 LTR ERVL 8 521 0 232 246 87 29 chr11 28768958 28769027 -120014445 + MIR SINE MIR 77 149 -113 198 0 0 0 chr11 28769872 28769894 -120013578 + (A)n Simple_repeat Simple_repeat 1 22 0 254 300 90 0 chr11 28769972 28770072 -120013400 - L2 LINE L2 -3 3269 3161 21 0 0 0 chr11 28770639 28770660 -120012812 + AT_rich Low_complexity Low_complexity 1 21 0 273 333 0 0 chr11 28770967 28771036 -120012436 + L2 LINE L2 3187 3255 -17 224 315 27 0 chr11 28771439 28771512 -120011960 + MIR SINE MIR 38 112 -150 547 313 7 0 chr11 28771861 28772008 -120011464 + MIR3 SINE MIR 54 201 -7 477 0 0 0 chr11 28773847 28773900 -120009572 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 56 0 0 chr11 28774256 28774292 -120009180 + AT_rich Low_complexity Low_complexity 1 36 0 291 334 65 51 chr11 28774550 28774761 -120008711 + MIR SINE MIR 5 212 -50 203 250 0 0 chr11 28775030 28775070 -120008402 + G-rich Low_complexity Low_complexity 5 44 0 1576 172 35 7 chr11 28776487 28776772 -120006700 - AluJb SINE Alu -19 293 1 17151 199 41 21 chr11 28776818 28778667 -120004805 - L1P4 LINE L1 -654 6160 4351 258 32 0 0 chr11 28778667 28778698 -120004774 + (TG)n Simple_repeat Simple_repeat 2 32 0 17151 199 41 21 chr11 28778698 28779291 -120004181 - L1P4 LINE L1 -2463 4351 3772 1834 127 67 11 chr11 28779291 28779574 -120003898 - AluSq SINE Alu -14 299 1 17151 199 41 21 chr11 28779574 28783119 -120000353 - L1P4 LINE L1 -3042 3772 2 321 309 97 43 chr11 28783279 28783486 -119999986 - L1ME LINE L1 -619 5502 5285 2009 150 0 0 chr11 28783634 28783921 -119999551 - AluSx SINE Alu -25 287 1 739 317 114 30 chr11 28784173 28784637 -119998835 + L2 LINE L2 2811 3313 0 1685 183 63 166 chr11 28784740 28785545 -119997927 + LTR8A LTR ERV1 2 723 -4 198 246 31 15 chr11 28785662 28785727 -119997745 - MIR SINE MIR -124 138 73 534 277 191 10 chr11 28786279 28786476 -119996996 + MIR SINE MIR 41 262 0 1788 209 90 75 chr11 28786745 28787291 -119996181 - MLT2B3 LTR ERVL 0 554 1 239 41 82 0 chr11 28787343 28787392 -119996080 + CT-rich Low_complexity Low_complexity 3 55 0 642 209 9 0 chr11 28787392 28787507 -119995965 - AluSq/x SINE Alu -196 116 1 2240 87 0 0 chr11 28787810 28788087 -119995385 + AluY SINE Alu 2 278 -33 225 0 0 0 chr11 28788087 28788112 -119995360 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 450 332 70 20 chr11 28788485 28788684 -119994788 + MIR SINE MIR 23 231 -31 210 307 27 27 chr11 28789793 28789868 -119993604 - MIR SINE MIR -139 123 49 288 0 0 0 chr11 28790072 28790104 -119993368 + (TG)n Simple_repeat Simple_repeat 2 33 0 207 315 139 0 chr11 28790248 28790356 -119993116 + MIR SINE MIR 109 231 -31 662 219 31 12 chr11 28790443 28790603 -119992869 - MER106B DNA MER1_type -1 1058 896 287 305 16 56 chr11 28790740 28790989 -119992483 - L1ME LINE L1 -371 5750 5512 21 36 0 0 chr11 28791011 28791039 -119992433 + AT_rich Low_complexity Low_complexity 1 28 0 361 340 44 48 chr11 28792623 28792873 -119990599 - MIR SINE MIR -2 260 12 218 277 15 0 chr11 28793085 28793150 -119990322 + GA-rich Low_complexity Low_complexity 1 66 0 326 259 49 0 chr11 28793611 28793692 -119989780 - L1MC4 LINE L1 -1339 6703 6619 34 0 0 0 chr11 28794154 28794188 -119989284 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr11 28794470 28794493 -119988979 + (T)n Simple_repeat Simple_repeat 1 23 0 2391 170 85 7 chr11 28794905 28795364 -119988108 - LTR42 LTR ERVL 0 495 1 27 0 0 0 chr11 28795716 28795743 -119987729 + AT_rich Low_complexity Low_complexity 1 27 0 1342 211 171 43 chr11 28796260 28796681 -119986791 + MLT1D LTR MaLR 28 502 -3 4443 122 27 6 chr11 28797402 28798072 -119985400 - LTR12 LTR ERV1 0 688 5 1254 189 75 71 chr11 28798088 28798622 -119984850 - pTR5 LTR ERV1 -1094 1344 741 239 321 115 57 chr11 28798779 28799327 -119984145 - L2 LINE L2 -910 2404 1825 377 343 0 0 chr11 28799430 28799573 -119983899 + (TA)n Simple_repeat Simple_repeat 2 144 0 1778 47 5 0 chr11 28799844 28800056 -119983416 + AluY SINE Alu 85 297 -14 2575 151 87 12 chr11 28800526 28801044 -119982428 - L1MB4 LINE L1 -1 6179 5623 244 206 22 120 chr11 28801097 28801115 -119982357 - MIR SINE MIR -160 102 84 2097 111 156 24 chr11 28801115 28801493 -119981979 - MSTA LTR MaLR 0 428 1 244 206 22 120 chr11 28801493 28801566 -119981906 - MIR SINE MIR -178 84 20 22 0 0 0 chr11 28802386 28802408 -119981064 + AT_rich Low_complexity Low_complexity 1 22 0 1302 181 60 81 chr11 28805074 28805456 -119978016 - MLT1A2 LTR MaLR 0 374 1 343 327 31 93 chr11 28806025 28806251 -119977221 - MIR SINE MIR -50 212 1 316 285 62 7 chr11 28806564 28806708 -119976764 + MER103 DNA DNA 15 166 0 251 361 44 25 chr11 28807541 28807699 -119975773 + MIR SINE MIR 74 234 -28 906 252 133 65 chr11 28808069 28808625 -119974847 - MLT1G1 LTR MaLR -1 594 1 269 269 39 67 chr11 28808893 28808997 -119974475 - MLT1G1-int LTR MaLR -233 1138 1038 574 247 5 63 chr11 28809575 28809765 -119973707 - MLT1G1-int LTR MaLR -769 602 424 419 260 77 99 chr11 28809819 28809912 -119973560 - MLT1G1 LTR MaLR -344 246 152 2259 105 0 6 chr11 28809912 28810225 -119973247 - AluSx SINE Alu -1 311 1 419 260 77 99 chr11 28810225 28810407 -119973065 - MLT1G1 LTR MaLR -438 152 1 184 270 95 14 chr11 28810460 28810534 -119972938 + L2 LINE L2 2156 2235 -1079 212 361 0 10 chr11 28810572 28810669 -119972803 - MIR SINE MIR -3 259 164 2313 96 0 0 chr11 28811357 28811650 -119971822 + AluSc SINE Alu 1 293 -16 1540 211 82 42 chr11 28811985 28812459 -119971013 - MLT1D LTR MaLR 0 505 13 429 20 0 0 chr11 28812596 28812646 -119970826 + (CA)n Simple_repeat Simple_repeat 1 50 0 1682 168 45 10 chr11 28812646 28812938 -119970534 - AluJb SINE Alu -10 302 1 567 314 13 26 chr11 28813400 28813626 -119969846 + MIR SINE MIR 40 262 0 437 284 21 34 chr11 28814495 28814648 -119968824 + MIR3 SINE MIR 8 157 -67 1689 196 0 3 chr11 28815206 28815497 -119967975 - AluJo SINE Alu -22 290 1 192 349 72 0 chr11 28815576 28815659 -119967813 - MIR3 SINE MIR -54 154 66 1439 279 61 10 chr11 28815730 28816125 -119967347 + LTR16C LTR ERVL 76 490 -1 335 333 94 42 chr11 28818241 28818433 -119965039 - MIR SINE MIR -50 212 11 334 312 165 0 chr11 28819210 28819380 -119964092 + MIR SINE MIR 35 232 -30 411 21 0 0 chr11 28819462 28819510 -119963962 + (CA)n Simple_repeat Simple_repeat 2 49 0 360 343 96 20 chr11 28819514 28819765 -119963707 + L3 LINE CR1 981 1250 -327 251 248 79 10 chr11 28821066 28821167 -119962305 - L1ME4a LINE L1 -65 6056 5949 891 201 13 36 chr11 28821251 28821475 -119961997 - L1MA10 LINE L1 -2 6332 6114 1128 188 62 23 chr11 28821480 28821736 -119961736 - Tigger2 DNA MER2_type -1 2717 2452 2429 116 60 3 chr11 28821745 28822126 -119961346 - MLT2A1 LTR ERVL -41 403 1 19420 154 23 25 chr11 28822126 28822421 -119961051 - L1P4 LINE L1 -596 6229 5935 2614 70 75 0 chr11 28822421 28822779 -119960693 - L1PA8 LINE L1 -6 6166 5782 19420 154 23 25 chr11 28822779 28826393 -119957079 - L1P4 LINE L1 -890 5935 2306 274 77 0 0 chr11 28826533 28826572 -119956900 + L1PA13 LINE L1 2237 2275 -4512 * 376 117 12 31 chr11 28826570 28826656 -119956816 - L1P4 LINE L1 -4575 2214 2132 195 42 0 0 chr11 28826658 28826682 -119956790 + (T)n Simple_repeat Simple_repeat 1 24 0 8444 145 28 14 chr11 28826697 28827742 -119955730 - Tigger2 DNA MER2_type -1249 1469 398 2884 36 39 0 chr11 28827742 28828098 -119955374 - L1PA4 LINE L1 -4 6151 5782 8444 145 28 14 chr11 28828098 28828501 -119954971 - Tigger2 DNA MER2_type -2320 398 2 3239 191 50 58 chr11 28828502 28828845 -119954627 - L1MA9 LINE L1 -201 6111 5767 216 97 0 0 chr11 28828845 28828876 -119954596 + (TG)n Simple_repeat Simple_repeat 1 31 0 3239 191 50 58 chr11 28828876 28829750 -119953722 - L1MA9 LINE L1 -545 5767 4918 1735 191 70 25 chr11 28830018 28830523 -119952949 - L1P5 LINE L1 -704 5452 4918 368 298 53 18 chr11 28830598 28830769 -119952703 - L1ME LINE L1 -346 5775 5599 23 78 0 0 chr11 28831024 28831075 -119952397 + AT_rich Low_complexity Low_complexity 1 51 0 775 291 43 4 chr11 28831089 28831323 -119952149 + MIR SINE MIR 7 249 -13 4376 88 12 5 chr11 28831542 28832181 -119951291 - L1P LINE L1 -763 5383 4740 3227 72 12 2 chr11 28832182 28832610 -119950862 + L1PA7 LINE L1 5710 6141 -13 4804 33 7 0 chr11 28833883 28834457 -119949015 - L1PA4 LINE L1 -1 6154 5577 1288 285 99 8 chr11 28834487 28834870 -119948602 - LTR16C LTR ERVL 0 491 74 429 284 66 69 chr11 28834914 28835203 -119948269 + L1ME4a LINE L1 5646 5933 -188 247 338 162 56 chr11 28836870 28837210 -119946262 + L2 LINE L2 2897 3272 0 2052 192 0 6 chr11 28838074 28838433 -119945039 - MLT1A1 LTR MaLR -8 357 1 330 275 182 42 chr11 28838536 28838559 -119944913 + L2 LINE L2 2643 2661 -652 854 242 27 27 chr11 28838559 28838778 -119944694 + MER20 DNA MER1_type 1 219 0 330 275 182 42 chr11 28838778 28839239 -119944233 + L2 LINE L2 2661 3312 -1 307 335 72 20 chr11 28839314 28839466 -119944006 - L2 LINE L2 -368 2946 2787 939 144 0 0 chr11 28839586 28839725 -119943747 - FLAM_C SINE Alu -4 139 1 2696 206 20 5 chr11 28839874 28840465 -119943007 - L1MA8 LINE L1 -5 6286 5687 249 325 39 13 chr11 28840819 28840896 -119942576 - MIR SINE MIR -150 112 34 743 241 156 56 chr11 28840900 28841240 -119942232 - MLT1A2 LTR MaLR 0 374 1 463 243 95 18 chr11 28843233 28843471 -119940001 + L1M4b LINE L1 4 307 -6552 22 0 0 0 chr11 28844753 28844775 -119938697 + AT_rich Low_complexity Low_complexity 1 22 0 637 267 120 10 chr11 28844789 28845081 -119938391 + L1M4b LINE L1 1760 2083 -4864 2148 128 13 0 chr11 28845338 28845644 -119937828 - AluSq SINE Alu -3 310 1 1451 303 113 18 chr11 28845799 28846660 -119936812 - L2 LINE L2 -4 3309 2375 1001 183 58 133 chr11 28846750 28847253 -119936219 - MER4C LTR ERV1 0 465 1 913 212 5 0 chr11 28847266 28847455 -119936017 - MER4C-int LTR ERV1 -14 6584 6395 10649 163 65 53 chr11 28847608 28850552 -119932920 - MER4C-int LTR ERV1 -335 5996 1494 1756 184 3 13 chr11 28850552 28850856 -119932616 + AluJb SINE Alu 1 301 -11 10649 163 65 53 chr11 28850856 28851184 -119932288 - MER4C-int LTR ERV1 -4837 1494 1171 2190 203 69 109 chr11 28851184 28851908 -119931564 - LTR8A LTR ERV1 0 727 33 448 281 27 0 chr11 28851967 28852113 -119931359 - MER4-int LTR ERV1 -4629 1969 1820 360 174 101 46 chr11 28852295 28852404 -119931068 - MER4-int LTR ERV1 -4932 1399 1285 234 319 14 0 chr11 28852406 28852478 -119930994 - tRNA-Glu-GAG tRNA tRNA 0 75 3 656 115 95 54 chr11 28852532 28852680 -119930792 - MER4C-int LTR ERV1 -5184 1147 994 552 233 181 20 chr11 28852993 28853291 -119930181 - MER4C-int LTR ERV1 -6169 429 2 597 224 172 62 chr11 28853295 28853714 -119929758 - MER4C LTR ERV1 0 465 1 235 244 37 24 chr11 28853962 28854044 -119929428 + LTR50 LTR ERVL 379 461 -334 * 279 282 58 51 chr11 28854027 28854099 -119929373 + LTR33A LTR ERVL 343 413 -110 2162 119 7 13 chr11 28854099 28854409 -119929063 - AluSx SINE Alu -4 308 1 279 282 58 51 chr11 28854409 28854492 -119928980 + LTR33A LTR ERVL 413 499 -24 261 292 22 11 chr11 28855712 28855801 -119927671 + MLT1L LTR MaLR 1 90 -525 478 263 113 73 chr11 28855834 28856081 -119927391 + MLT1L LTR MaLR 340 596 -19 457 298 25 26 chr11 28856304 28856509 -119926963 + MER74A LTR ERVL 339 604 -18 276 143 16 48 chr11 28857296 28857359 -119926113 - HERVFH21 LTR ERV1 -3048 3481 3421 202 317 0 24 chr11 28857895 28857977 -119925495 + MIR SINE MIR 183 262 0 230 179 36 0 chr11 28859415 28859471 -119924001 - LTR37A LTR ERV1 0 426 369 5823 95 17 22 chr11 28859481 28861210 -119922262 + L1PA13 LINE L1 4407 6144 -19 411 306 16 0 chr11 28861213 28861337 -119922135 - MIR SINE MIR -135 127 2 1599 188 17 3 chr11 28861471 28861769 -119921703 + AluJb SINE Alu 1 302 -10 247 267 33 83 chr11 28861769 28861889 -119921583 + L2 LINE L2 3157 3270 -2 301 301 71 18 chr11 28862307 28862420 -119921052 + L2 LINE L2 3193 3311 -2 6529 21 9 0 chr11 28862934 28863697 -119919775 - L1PA4 LINE L1 -4 6151 5382 5099 21 0 2 chr11 28863695 28864310 -119919162 + L1PA4 LINE L1 4777 5390 -756 * 595 309 41 38 chr11 28864316 28864636 -119918836 - LTR16C LTR ERVL -2 489 169 685 348 63 3 chr11 28865002 28865335 -119918137 + HERVL LTR ERVL 4044 4396 -1258 669 318 60 37 chr11 28865416 28865932 -119917540 - HERV16 LTR ERVL -3244 2241 1772 269 345 66 30 chr11 28866274 28866471 -119917001 - HERV16 LTR ERVL -4790 206 3 679 254 28 0 chr11 28867268 28867410 -119916062 + MER5A DNA MER1_type 43 188 -1 291 270 151 13 chr11 28867731 28867890 -119915582 + MLT1E LTR MaLR 7 187 -406 * 1307 231 44 51 chr11 28867867 28868039 -119915433 + MLT1E1 LTR MaLR 103 275 -379 1645 196 3 23 chr11 28868039 28868340 -119915132 + AluJo SINE Alu 1 295 -17 1307 231 44 51 chr11 28868340 28868631 -119914841 + MLT1E1 LTR MaLR 275 654 0 268 256 68 51 chr11 28869329 28869446 -119914026 - L2 LINE L2 -5 3308 3190 184 264 64 96 chr11 28869708 28869833 -119913639 + L3 LINE CR1 1042 1162 -415 252 265 0 48 chr11 28870062 28870145 -119913327 - MER5B DNA MER1_type -79 99 21 197 250 0 67 chr11 28870171 28870231 -119913241 + L3 LINE CR1 1349 1404 -173 1170 301 41 12 chr11 28870650 28871065 -119912407 + LTR16A LTR ERVL 18 444 -6 462 274 0 0 chr11 28871553 28871659 -119911813 + MIR SINE MIR 154 259 -3 232 235 0 0 chr11 28872464 28872515 -119910957 + (TAG)n Simple_repeat Simple_repeat 3 53 0 297 237 149 35 chr11 28872541 28872655 -119910817 + MLT1L LTR MaLR 1 127 -488 21 36 0 0 chr11 28874293 28874321 -119909151 + AT_rich Low_complexity Low_complexity 1 28 0 1599 252 47 35 chr11 28874579 28875175 -119908297 - L1ME1 LINE L1 -16 6386 5784 1412 157 17 13 chr11 28875196 28875432 -119908040 - AluSx SINE Alu -13 299 63 1005 202 54 32 chr11 28875432 28875827 -119907645 - L1ME1 LINE L1 -688 5732 5332 975 199 35 0 chr11 28875829 28876030 -119907442 - L1ME1 LINE L1 -4790 1594 1387 884 194 20 20 chr11 28876241 28876437 -119907035 + MER61A LTR ERV1 1 196 -147 11500 237 51 20 chr11 28876439 28881124 -119902348 - L1P4 LINE L1 -415 6711 1757 3704 177 64 42 chr11 28881123 28881932 -119901540 - L1ME1 LINE L1 -5447 937 111 * 301 221 7 114 chr11 28881933 28882073 -119901399 - L1M4 LINE L1 -1446 5198 5074 439 256 34 54 chr11 28882080 28882310 -119901162 - L1M2 LINE L1 -4256 1960 1610 2737 111 54 5 chr11 28882388 28882811 -119900661 - MLT2A1 LTR ERVL 0 444 1 237 189 158 11 chr11 28882957 28883052 -119900420 - L1M4 LINE L1 -4968 1574 1466 4531 193 58 46 chr11 28883064 28885168 -119898304 - L1MB1 LINE L1 -26 6142 4010 441 0 0 0 chr11 28885267 28885316 -119898156 + (TG)n Simple_repeat Simple_repeat 1 49 0 415 331 25 6 chr11 28886136 28886296 -119897176 + MER117 DNA MER1_type 3 165 -32 27 29 0 0 chr11 28886545 28886579 -119896893 + AT_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr11 28886723 28886776 -119896696 + AT_rich Low_complexity Low_complexity 1 53 0 1861 178 55 59 chr11 28886867 28887323 -119896149 - L1MB5 LINE L1 -59 6115 5662 210 275 220 28 chr11 28887935 28888044 -119895428 + L2 LINE L2 2677 2806 -508 337 319 34 0 chr11 28888080 28888199 -119895273 + L2 LINE L2 3191 3313 0 360 342 136 26 chr11 28888204 28888631 -119894841 + L2 LINE L2 2838 3311 -2 356 288 62 25 chr11 28889086 28889246 -119894226 + MIR SINE MIR 17 182 -80 211 335 13 42 chr11 28889292 28889479 -119893993 - L2 LINE L2 -336 2977 2795 528 129 47 6 chr11 28889645 28889816 -119893656 + (TA)n Simple_repeat Simple_repeat 1 178 0 230 265 0 0 chr11 28889915 28889964 -119893508 + MIR SINE MIR 74 122 -140 288 257 78 64 chr11 28890164 28890352 -119893120 + MIR SINE MIR 31 216 -46 283 267 104 0 chr11 28890671 28890759 -119892713 - MIR SINE MIR -67 141 50 3739 220 10 1 chr11 28890763 28891625 -119891847 - L1PA16 LINE L1 -1488 4658 3789 * 5013 171 15 9 chr11 28891621 28893093 -119890379 + L1PA16 LINE L1 4653 6131 -35 24 32 0 0 chr11 28893093 28893124 -119890348 + AT_rich Low_complexity Low_complexity 1 31 0 362 318 134 22 chr11 28895842 28896021 -119887451 + MIR SINE MIR 56 254 -8 230 79 0 26 chr11 28896022 28896060 -119887412 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 2507 157 25 0 chr11 28896417 28896818 -119886654 + LTR57 LTR ERVL 1 411 0 200 132 189 0 chr11 28896912 28896965 -119886507 - L2 LINE L2 -9 3263 3201 21578 151 21 12 chr11 28897494 28899782 -119883690 - L1PA10 LINE L1 0 6168 3903 2557 107 28 6 chr11 28899782 28900138 -119883334 - THE1B LTR MaLR 0 364 1 9772 122 37 38 chr11 28900138 28901720 -119881752 - THE1B-int LTR MaLR 0 1580 1 2454 139 0 6 chr11 28901720 28902086 -119881386 - THE1B LTR MaLR 0 364 1 21578 151 21 12 chr11 28902086 28902854 -119880618 - L1PA10 LINE L1 -2265 3903 3144 180 77 0 0 chr11 28902854 28902880 -119880592 + (TTG)n Simple_repeat Simple_repeat 3 28 0 21578 151 21 12 chr11 28902880 28904689 -119878783 - L1PA10 LINE L1 -3024 3144 1259 5299 240 42 58 chr11 28904794 28906521 -119876951 - L1P3 LINE L1 -4753 1708 9 187 271 57 29 chr11 28906817 28906887 -119876585 - L2 LINE L2 -1 3312 3241 284 349 8 31 chr11 28908694 28908823 -119874649 - L2 LINE L2 -201 3071 2946 412 224 43 9 chr11 28908971 28909087 -119874385 + MER53 DNA DNA 1 120 -69 305 333 0 0 chr11 28909087 28909177 -119874295 + L1MC4 LINE L1 6614 6703 -1339 301 308 11 0 chr11 28909097 28909188 -119874284 - L1MC4 LINE L1 -1339 6703 6612 * 437 206 199 23 chr11 28909653 28909784 -119873688 + MER58C DNA MER1_type 62 215 0 518 299 52 17 chr11 28909805 28909979 -119873493 + ERVL LTR ERVL 4909 5088 -676 612 270 108 67 chr11 28910356 28910790 -119872682 + LTR16A1 LTR ERVL 2 453 -4 1153 309 55 23 chr11 28910799 28911274 -119872198 + L2 LINE L2 2804 3293 -20 450 0 0 0 chr11 28911491 28911541 -119871931 + (TA)n Simple_repeat Simple_repeat 1 50 0 737 275 15 25 chr11 28911557 28911757 -119871715 - MLT1J1 LTR MaLR -18 428 231 192 77 0 0 chr11 28911808 28911834 -119871638 + (TC)n Simple_repeat Simple_repeat 2 27 0 855 55 0 0 chr11 28911837 28911946 -119871526 + (TA)n Simple_repeat Simple_repeat 1 109 0 399 221 93 43 chr11 28913229 28913369 -119870103 + MLT1H LTR MaLR 403 549 0 590 280 40 44 chr11 28914305 28914555 -119868917 - MIR SINE MIR -1 261 13 19431 158 46 18 chr11 28914881 28922370 -119861102 + L1MA1 LINE L1 16 7717 -4 296 321 88 22 chr11 28923345 28923482 -119859990 - MIR SINE MIR 0 262 117 844 298 89 50 chr11 28923854 28924257 -119859215 + LTR16C LTR ERVL 70 488 -3 286 273 192 6 chr11 28924295 28924467 -119859005 - L2 LINE L2 -504 2810 2607 651 318 106 42 chr11 28924552 28925024 -119858448 - LTR33 LTR ERVL -8 513 12 189 0 0 0 chr11 28925207 28925228 -119858244 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 284 276 45 21 chr11 28925741 28925858 -119857614 + MIR SINE MIR 3 122 -94 251 359 129 6 chr11 28926055 28926225 -119857247 + MIR SINE MIR 17 207 -55 200 228 0 35 chr11 28926299 28926356 -119857116 + CT-rich Low_complexity Low_complexity 6 60 0 589 235 140 17 chr11 28926405 28926584 -119856888 - MIR SINE MIR -34 228 28 181 73 24 49 chr11 28927407 28927448 -119856024 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1068 209 15 5 chr11 28927474 28927680 -119855792 + AluJb SINE Alu 87 294 -18 347 240 188 0 chr11 28928259 28928355 -119855117 + L2 LINE L2 3159 3272 0 240 257 14 29 chr11 28929538 28929608 -119853864 + CT-rich Low_complexity Low_complexity 4 72 0 1363 119 38 17 chr11 28930076 28930311 -119853161 - L1P4 LINE L1 -552 5609 5370 190 227 45 0 chr11 28930699 28930787 -119852685 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 206 206 29 15 chr11 28930837 28930905 -119852567 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 521 243 105 52 chr11 28931791 28932001 -119851471 - MIR SINE MIR -27 235 15 23 0 0 0 chr11 28932657 28932680 -119850792 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr11 28932867 28932894 -119850578 + (T)n Simple_repeat Simple_repeat 1 27 0 273 304 116 7 chr11 28933195 28933333 -119850139 + L2 LINE L2 2222 2374 -940 7335 32 8 0 chr11 28933340 28934214 -119849258 - L1PA3 LINE L1 0 6155 5275 27379 70 2 17 chr11 28934214 28938703 -119844769 - L1P LINE L1 -1701 4445 3 334 273 63 49 chr11 28938729 28938816 -119844656 + L2 LINE L2 2394 2485 -829 1827 154 3 39 chr11 28938816 28939180 -119844292 - L1PA14 LINE L1 0 6161 5811 334 273 63 49 chr11 28939180 28939235 -119844237 + L2 LINE L2 2485 2538 -776 429 229 0 0 chr11 28939334 28939439 -119844033 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 669 243 33 0 chr11 28939780 28939932 -119843540 + MER63A DNA MER1_type 53 209 -1 185 116 0 47 chr11 28940190 28940233 -119843239 + (TTG)n Simple_repeat Simple_repeat 2 42 0 235 243 108 27 chr11 28940246 28940320 -119843152 - L1MEd LINE L1 -5600 519 440 618 258 63 0 chr11 28940661 28940820 -119842652 + MER58B DNA MER1_type 173 341 0 2020 215 43 53 chr11 28940831 28941524 -119841948 - Charlie1 DNA MER1_type -3 2758 2073 1291 238 78 17 chr11 28941526 28941870 -119841602 - MLT1A1 LTR MaLR 0 365 1 3011 255 82 4 chr11 28941891 28942923 -119840549 + L1ME LINE L1 3089 4201 -1945 274 278 0 0 chr11 28942942 28943014 -119840458 + (TA)n Simple_repeat Simple_repeat 1 72 0 845 110 0 0 chr11 28943028 28943169 -119840303 + AluSp/q SINE Alu 168 308 0 256 292 108 29 chr11 28993781 28994021 -119789451 + L1ME LINE L1 5635 5893 -228 25 51 0 0 chr11 28994145 28994184 -119789288 + AT_rich Low_complexity Low_complexity 1 39 0 269 319 78 30 chr11 28994425 28994591 -119788881 + MIR3 SINE MIR 28 201 -7 750 257 16 21 chr11 28994861 28995048 -119788424 - MER5A DNA MER1_type -3 186 1 355 298 44 22 chr11 28995048 28995229 -119788243 + L1MC4a LINE L1 5646 5830 -1978 21 0 0 0 chr11 28995527 28995548 -119787924 + AT_rich Low_complexity Low_complexity 1 21 0 561 224 22 98 chr11 28995869 28996061 -119787411 + MIR SINE MIR 60 234 -28 21 57 0 0 chr11 28996329 28996364 -119787108 + AT_rich Low_complexity Low_complexity 1 35 0 2240 132 0 0 chr11 28996571 28996881 -119786591 - AluSx SINE Alu -2 310 1 356 277 40 10 chr11 28997460 28997561 -119785911 - MER5A DNA MER1_type -1 188 85 1962 166 78 68 chr11 28998055 28998555 -119784917 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr11 28998597 28998618 -119784854 + (TA)n Simple_repeat Simple_repeat 1 21 0 1891 169 7 0 chr11 28999588 28999896 -119783576 + AluJo SINE Alu 1 310 -2 261 348 0 0 chr11 29000663 29000752 -119782720 + L2 LINE L2 3225 3313 0 453 218 92 21 chr11 29000997 29001139 -119782333 + MER91B DNA MER1_type 3 154 -36 182 200 217 17 chr11 29001596 29001656 -119781816 - L2 LINE L2 -2 3270 3199 310 297 194 33 chr11 29001795 29002140 -119781332 - L2 LINE L2 -251 3021 2637 410 260 0 21 chr11 29003465 29003561 -119779911 - MIR SINE MIR -76 186 93 603 244 98 6 chr11 29003779 29003943 -119779529 - MIR SINE MIR 0 262 84 274 106 200 59 chr11 29004276 29004361 -119779111 + MER113 DNA MER1_type? 114 210 -311 194 321 0 0 chr11 29004469 29004522 -119778950 + MIR SINE MIR 206 258 -4 203 171 0 0 chr11 29004522 29004557 -119778915 + CT-rich Low_complexity Low_complexity 4 38 0 517 231 0 17 chr11 29004816 29004933 -119778539 - L1ME LINE L1 -619 5547 5433 1813 159 24 42 chr11 29004935 29005252 -119778220 - L1MB7 LINE L1 -16 6168 5858 2351 67 0 10 chr11 29005252 29005549 -119777923 + AluY SINE Alu 2 295 -16 1813 159 24 42 chr11 29005549 29005608 -119777864 - L1MB7 LINE L1 -326 5858 5799 544 211 0 0 chr11 29005608 29005703 -119777769 + MER82 DNA MER2_type 2 96 -557 435 306 65 15 chr11 29005720 29005919 -119777553 - MIR SINE MIR -52 210 2 926 224 5 52 chr11 29005945 29006155 -119777317 + MER82 DNA MER2_type 435 634 -19 17903 89 4 8 chr11 29006164 29009364 -119774108 - L1PA7 LINE L1 -2 6152 2954 14112 142 21 111 chr11 29009467 29012666 -119770806 - L1PA7 LINE L1 -3225 2921 12 6136 110 32 9 chr11 29012677 29012712 -119770760 + L1P5 LINE L1 965 998 -5206 1943 150 10 0 chr11 29012712 29013019 -119770453 + AluSg SINE Alu 1 310 0 6136 110 32 9 chr11 29013019 29013983 -119769489 + L1P5 LINE L1 998 1977 -4227 13882 202 8 35 chr11 29014086 29016675 -119766797 + L1P5 LINE L1 2379 4853 -1355 2247 115 0 3 chr11 29016675 29016979 -119766493 + AluSx SINE Alu 8 310 -2 13882 202 8 35 chr11 29016979 29017941 -119765531 + L1P5 LINE L1 4853 5839 -369 441 0 0 0 chr11 29017941 29017990 -119765482 + (CA)n Simple_repeat Simple_repeat 2 50 0 2397 113 62 11 chr11 29018241 29018614 -119764858 - MER65A LTR ERV1 0 445 54 872 108 11 38 chr11 29018631 29018816 -119764656 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 232 121 0 0 chr11 29018820 29018853 -119764619 - MER65B LTR ERV1 -498 33 1 281 335 35 28 chr11 29020399 29020543 -119762929 + MIR SINE MIR 22 166 -67 425 37 0 0 chr11 29021624 29021678 -119761794 + MADE1 DNA Mariner 27 80 0 2311 72 7 3 chr11 29021705 29021997 -119761475 + AluSg SINE Alu 1 293 -17 188 319 32 21 chr11 29022612 29022706 -119760766 - MIR SINE MIR 0 262 168 433 216 98 52 chr11 29022772 29022832 -119760640 - MIR SINE MIR -102 160 104 1868 167 0 10 chr11 29022832 29023143 -119760329 + AluJo SINE Alu 1 308 -4 433 216 98 52 chr11 29023143 29023235 -119760237 - MIR SINE MIR -158 104 1 530 260 0 52 chr11 29023977 29024131 -119759341 - MIR SINE MIR 0 262 117 1328 241 78 16 chr11 29024195 29024630 -119758842 + LTR33 LTR ERVL 56 517 -4 341 327 18 9 chr11 29024633 29024743 -119758729 - MIR SINE MIR -150 112 2 331 250 46 37 chr11 29025072 29025180 -119758292 + MER5B DNA MER1_type 67 175 -3 268 289 13 0 chr11 29025717 29025793 -119757679 + MIR SINE MIR 66 142 -66 975 164 23 0 chr11 29025801 29025972 -119757500 + MER5A DNA MER1_type 1 175 -14 267 233 206 0 chr11 29026110 29026183 -119757289 + L2 LINE L2 2927 3014 -299 354 233 98 38 chr11 29026257 29026390 -119757082 + L2 LINE L2 3135 3275 -38 1097 184 19 19 chr11 29026392 29026598 -119756874 + MER3 DNA MER1_type 1 206 -3 21 0 0 0 chr11 29026783 29026804 -119756668 + AT_rich Low_complexity Low_complexity 1 21 0 297 244 85 0 chr11 29027122 29027204 -119756268 + MIR SINE MIR 85 173 -89 266 256 33 33 chr11 29027521 29027611 -119755861 + MIR3 SINE MIR 118 207 -1 581 304 93 39 chr11 29027790 29028122 -119755350 - LTR16C LTR ERVL 0 491 142 419 293 73 56 chr11 29028614 29028972 -119754500 - HERV16 LTR ERVL -4590 406 43 394 286 58 35 chr11 29028979 29029221 -119754251 - LTR16C LTR ERVL -5 486 194 1431 186 4 0 chr11 29029497 29029733 -119753739 - AluJb SINE Alu -18 294 58 232 196 20 0 chr11 29029758 29029809 -119753663 - MER94 DNA DNA -78 56 5 189 74 0 0 chr11 29029817 29029844 -119753628 + (TC)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr11 29029886 29029912 -119753560 + (CA)n Simple_repeat Simple_repeat 2 27 0 752 176 0 0 chr11 29030478 29030597 -119752875 - MER2 DNA MER2_type -226 119 1 21 36 0 0 chr11 29030828 29030856 -119752616 + AT_rich Low_complexity Low_complexity 1 28 0 315 311 29 0 chr11 29031021 29031124 -119752348 + MIR SINE MIR 154 259 -3 254 267 20 69 chr11 29032402 29032604 -119750868 + L1ME4a LINE L1 5887 6078 -43 1732 181 10 16 chr11 29033081 29033385 -119750087 + AluJo SINE Alu 1 302 -10 429 336 83 17 chr11 29033565 29033913 -119749559 + L2 LINE L2 2456 2826 -488 286 353 41 8 chr11 29034495 29034617 -119748855 + L2 LINE L2 1834 1959 -1355 22 0 0 0 chr11 29034695 29034717 -119748755 + AT_rich Low_complexity Low_complexity 1 22 0 350 282 201 7 chr11 29035773 29035922 -119747550 + MER5A DNA MER1_type 9 186 -3 326 291 120 13 chr11 29036015 29036173 -119747299 - MIR SINE MIR -73 189 15 768 18 64 0 chr11 29036722 29036832 -119746640 + (TTTTC)n Simple_repeat Simple_repeat 4 120 0 2402 95 0 0 chr11 29037016 29037320 -119746152 + AluSp SINE Alu 1 304 -9 1002 176 9 69 chr11 29037676 29037909 -119745563 - MER20 DNA MER1_type 0 219 1 189 184 41 20 chr11 29038819 29038868 -119744604 - MIR SINE MIR -119 143 94 197 204 143 0 chr11 29039129 29039178 -119744294 - L2 LINE L2 -61 3252 3197 284 264 28 0 chr11 29039993 29040065 -119743407 - MIR3 SINE MIR -30 178 105 23 0 0 0 chr11 29040474 29040497 -119742975 + AT_rich Low_complexity Low_complexity 1 23 0 1919 124 53 3 chr11 29041062 29041345 -119742127 + AluSx SINE Alu 1 297 -15 1882 136 0 0 chr11 29041567 29041818 -119741654 - AluSq SINE Alu -62 251 1 289 236 56 0 chr11 29041849 29041938 -119741534 - MER94 DNA DNA -40 94 1 517 312 65 13 chr11 29043193 29043347 -119740125 + MIR3 SINE MIR 30 191 -17 2813 238 61 30 chr11 29045346 29046378 -119737094 - L1MDa LINE L1 -5058 1482 342 615 233 5 37 chr11 29046378 29046593 -119736879 + L1M4 LINE L1 4999 5206 -940 2281 125 0 0 chr11 29046593 29046898 -119736574 + AluSx SINE Alu 1 305 -7 328 118 0 20 chr11 29048258 29048309 -119735163 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 1085 110 40 50 chr11 29048521 29048721 -119734751 + MSTB1 LTR MaLR 1 198 -234 1103 166 205 46 chr11 29048724 29048983 -119734489 + AluJo SINE Alu 1 300 -2 267 103 0 0 chr11 29048987 29049026 -119734446 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2314 104 3 0 chr11 29049031 29049339 -119734133 + AluY SINE Alu 1 309 -2 1064 139 49 69 chr11 29049350 29049548 -119733924 + MSTB1 LTR MaLR 193 387 -45 2484 114 5 19 chr11 29049548 29049917 -119733555 - THE1B LTR MaLR 0 364 1 1064 139 49 69 chr11 29049917 29049963 -119733509 + MSTB1 LTR MaLR 387 432 0 349 208 13 0 chr11 29050462 29050539 -119732933 - MER116 DNA Mariner 0 80 3 393 267 125 40 chr11 29050635 29050811 -119732661 + MIR SINE MIR 54 244 -18 425 241 105 8 chr11 29050930 29051063 -119732409 - MIR3 SINE MIR -18 190 45 439 273 107 0 chr11 29051301 29051451 -119732021 + MER117 DNA MER1_type 1 166 -31 414 294 40 48 chr11 29051453 29051579 -119731893 + MER5A DNA MER1_type 65 189 0 1717 176 127 28 chr11 29051859 29052284 -119731188 + MLT1C LTR MaLR 1 467 0 392 283 26 9 chr11 29052299 29052412 -119731060 - MIR SINE MIR -101 161 47 1866 164 7 0 chr11 29053193 29053485 -119729987 - AluJo SINE Alu -18 294 1 472 253 324 17 chr11 29054488 29054784 -119728688 - MLT1J2 LTR MaLR 0 450 64 4263 156 34 86 chr11 29055226 29055942 -119727530 + L1MCa LINE L1 21 671 -5755 796 159 46 7 chr11 29055942 29056093 -119727379 + L1PA16 LINE L1 6007 6163 -3 4263 156 34 86 chr11 29056093 29056392 -119727080 + L1MCa LINE L1 671 984 -5442 805 315 116 19 chr11 29056530 29057096 -119726376 - L2 LINE L2 -230 3083 2469 393 294 27 41 chr11 29057150 29057296 -119726176 - MIR3 SINE MIR -64 144 1 437 316 0 13 chr11 29057520 29057675 -119725797 - MIR SINE MIR -26 236 84 2463 233 38 0 chr11 29058548 29059080 -119724392 - MLT1H1 LTR MaLR -3 552 1 433 213 98 25 chr11 29059325 29059447 -119724025 + MIR SINE MIR 131 261 -1 727 362 32 12 chr11 29060049 29060543 -119722929 + HERV16 LTR ERVL 1024 1527 -3469 490 312 20 15 chr11 29060650 29060849 -119722623 + HERV16 LTR ERVL 1726 1925 -3729 1059 315 75 30 chr11 29060942 29062124 -119721348 + HERV16 LTR ERVL 2166 3416 -2041 565 316 12 21 chr11 29062300 29062626 -119720846 + HERV16 LTR ERVL 3623 3945 -1709 789 324 55 33 chr11 29062700 29063791 -119719681 + HERV16 LTR ERVL 4130 5337 -427 2325 119 39 66 chr11 29063958 29064141 -119719331 + L1MCa LINE L1 1001 1187 -5239 935 89 0 0 chr11 29064141 29064264 -119719208 - L1PA16 LINE L1 -9 6157 6035 2325 119 39 66 chr11 29064264 29064593 -119718879 + L1MCa LINE L1 1187 1499 -4927 1665 214 55 11 chr11 29064593 29064972 -119718500 + MSTD LTR MaLR 1 396 0 4022 248 57 24 chr11 29064972 29066280 -119717192 + MSTD-int LTR MaLR 4 1385 -350 909 199 157 51 chr11 29066286 29066389 -119717083 + MSTD LTR MaLR 52 143 -253 2364 90 0 0 chr11 29066389 29066689 -119716783 - AluY SINE Alu -11 300 1 909 199 157 51 chr11 29066689 29066897 -119716575 + MSTD LTR MaLR 143 396 0 9694 217 38 36 chr11 29066897 29070766 -119712706 + L1MC1 LINE L1 1498 5458 -968 3705 170 41 31 chr11 29070868 29071226 -119712246 + L1MC1 LINE L1 5816 6169 -444 282 29 0 0 chr11 29071226 29071261 -119712211 + (TG)n Simple_repeat Simple_repeat 2 36 0 3705 170 41 31 chr11 29071261 29071686 -119711786 + L1MC1 LINE L1 6169 6607 -6 6426 70 17 0 chr11 29071686 29072979 -119710493 + L1PA8A LINE L1 4821 6128 -3 196 196 65 0 chr11 29073062 29073108 -119710364 + L2 LINE L2 3220 3268 -4 1036 163 51 23 chr11 29073395 29073610 -119709862 - Tigger1 DNA MER2_type 0 2418 2198 567 139 0 0 chr11 29073610 29073689 -119709783 + FRAM SINE Alu 59 137 -39 728 304 91 17 chr11 29074133 29074662 -119708810 + L1ME4a LINE L1 5548 6115 -6 2169 213 24 28 chr11 29075308 29075852 -119707620 + MLT1F LTR MaLR 1 542 0 487 235 67 45 chr11 29075988 29076167 -119707305 + MIR SINE MIR 48 230 -32 493 206 0 0 chr11 29077182 29077274 -119706198 - MLT2F LTR ERVL -99 564 473 1227 218 108 25 chr11 29077274 29077627 -119705845 + MER31B LTR ERV1 1 382 -84 962 288 56 21 chr11 29077665 29078002 -119705470 - L2 LINE L2 -34 3279 2931 216 264 0 0 chr11 29078052 29078105 -119705367 - MIR SINE MIR -34 228 176 391 254 5 103 chr11 29078105 29078210 -119705262 - L1MC/D LINE L1 -440 5681 5651 2386 97 3 0 chr11 29078210 29078520 -119704952 - AluSp SINE Alu -2 311 1 391 254 5 103 chr11 29078520 29078637 -119704835 - L1MC/D LINE L1 -470 5651 5524 358 330 41 4 chr11 29078865 29079042 -119704430 + MIR SINE MIR 22 212 -50 1063 42 91 0 chr11 29079110 29079253 -119704219 - L1PA11 LINE L1 0 6174 6019 891 141 20 0 chr11 29079354 29079503 -119703969 + LTR12 LTR ERV1 335 486 -228 255 333 69 23 chr11 29079517 29079691 -119703781 + MLT1K LTR MaLR 375 556 -32 367 294 65 7 chr11 29079910 29080063 -119703409 + MIR SINE MIR 67 228 -34 366 206 41 41 chr11 29082454 29082551 -119700921 - MIR SINE MIR 0 262 166 1074 236 54 3 chr11 29082717 29083030 -119700442 - L1ME3 LINE L1 -70 6092 5764 254 340 41 0 chr11 29083031 29083128 -119700344 + L2 LINE L2 2590 2690 -624 1052 132 72 157 chr11 29083444 29083762 -119699710 - MSTA LTR MaLR 0 428 138 612 286 103 17 chr11 29084297 29084531 -119698941 + MIR SINE MIR 9 262 0 2067 137 0 0 chr11 29085935 29086228 -119697244 - AluSc SINE Alu -16 293 1 530 165 103 0 chr11 29086352 29086449 -119697023 - FLAM_A SINE Alu -32 110 4 431 241 60 9 chr11 29086462 29086578 -119696894 + L2 LINE L2 3192 3313 0 371 270 113 26 chr11 29087854 29087969 -119695503 + L2 LINE L2 3189 3313 0 356 260 10 10 chr11 29088793 29088889 -119694583 + L2 LINE L2 3170 3265 -7 180 298 0 0 chr11 29089013 29089060 -119694412 + MIR SINE MIR 209 255 -7 212 163 0 47 chr11 29089207 29089250 -119694222 + (TAA)n Simple_repeat Simple_repeat 2 42 0 266 310 62 9 chr11 29089257 29089370 -119694102 - MIR SINE MIR -15 247 129 195 184 0 0 chr11 29089915 29089953 -119693519 + (TG)n Simple_repeat Simple_repeat 2 39 0 1264 201 21 0 chr11 29091419 29091658 -119691814 + MLT1E LTR MaLR 350 593 0 423 262 28 28 chr11 29091658 29091765 -119691707 + MIR SINE MIR 154 260 -2 186 200 25 0 chr11 29091800 29091840 -119691632 - L2 LINE L2 -2 3311 3271 463 332 73 23 chr11 29091940 29092068 -119691404 - L2 LINE L2 -175 3097 2952 1062 199 0 9 chr11 29092068 29092279 -119691193 + MER3 DNA MER1_type 1 209 0 463 332 73 23 chr11 29092279 29092370 -119691102 - L2 LINE L2 -320 2952 2867 562 286 62 35 chr11 29092412 29092639 -119690833 - MIR SINE MIR 0 262 30 362 260 77 10 chr11 29094014 29094118 -119689354 + MER5B DNA MER1_type 8 118 -60 463 37 61 0 chr11 29094685 29094767 -119688705 + CT-rich Low_complexity Low_complexity 2 88 0 475 225 14 7 chr11 29094836 29094974 -119688498 - MLT1H LTR MaLR -388 161 23 229 310 93 8 chr11 29096182 29096311 -119687161 - MIR SINE MIR -71 191 52 250 382 35 20 chr11 29097261 29097460 -119686012 - L3 LINE CR1 -54 1523 1322 479 299 13 7 chr11 29097477 29097631 -119685841 - MIR SINE MIR 0 262 108 462 96 0 0 chr11 29097659 29097732 -119685740 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 1694 94 0 0 chr11 29097834 29098046 -119685426 - AluSq SINE Alu -101 212 1 814 124 44 0 chr11 29098046 29098159 -119685313 - AluSq/x SINE Alu -176 136 19 22 0 0 0 chr11 29098250 29098272 -119685200 + AT_rich Low_complexity Low_complexity 1 22 0 361 65 0 0 chr11 29098671 29098717 -119684755 + (TG)n Simple_repeat Simple_repeat 1 46 0 243 111 0 0 chr11 29098722 29098758 -119684714 - L1MB1 LINE L1 -13 6155 6120 2009 117 10 13 chr11 29098772 29099080 -119684392 - AluSc SINE Alu -2 307 1 3734 132 18 66 chr11 29099080 29099849 -119683623 - L1MB1 LINE L1 -59 6130 5395 377 304 7 44 chr11 29099886 29100021 -119683451 - MER5A DNA MER1_type -43 146 17 193 301 87 29 chr11 29100935 29101038 -119682434 + MER5B DNA MER1_type 2 110 -68 245 246 0 18 chr11 29100956 29101013 -119682459 - MER5A DNA MER1_type -25 164 109 242 365 28 47 chr11 29101192 29101403 -119682069 + L2 LINE L2 2895 3101 -212 7110 227 25 39 chr11 29101517 29104477 -119678995 - L1P3 LINE L1 -3528 2933 9 188 271 57 29 chr11 29104773 29104843 -119678629 - L2 LINE L2 -1 3312 3241 284 349 8 31 chr11 29106646 29106775 -119676697 - L2 LINE L2 -201 3071 2946 384 224 43 9 chr11 29106923 29107039 -119676433 + MER53 DNA DNA 1 120 -69 305 333 0 0 chr11 29107039 29107129 -119676343 + L1MC4 LINE L1 6614 6703 -1339 585 323 32 42 chr11 29107504 29107618 -119675854 + ERVL LTR ERVL 4782 4896 -868 600 215 138 36 chr11 29107618 29107813 -119675659 + MER58C DNA MER1_type 1 215 0 585 323 32 42 chr11 29107813 29108008 -119675464 + ERVL LTR ERVL 4896 5088 -676 597 270 108 67 chr11 29108385 29108819 -119674653 + LTR16A1 LTR ERVL 2 453 -4 1152 309 55 23 chr11 29108828 29109303 -119674169 + L2 LINE L2 2804 3293 -20 558 0 0 0 chr11 29109518 29109580 -119673892 + (TA)n Simple_repeat Simple_repeat 1 62 0 252 196 0 18 chr11 29109596 29109652 -119673820 - MLT1J2 LTR MaLR -18 432 378 2457 219 27 19 chr11 29109836 29111164 -119672308 + L1PA15-16 LINE L1 1934 3447 -3402 353 221 93 43 chr11 29112562 29112702 -119670770 + MLT1H LTR MaLR 403 549 0 581 280 40 44 chr11 29113638 29113888 -119669584 - MIR SINE MIR -1 261 13 18170 159 46 18 chr11 29114214 29121704 -119661768 + L1MA1 LINE L1 16 7717 -4 287 321 88 22 chr11 29122679 29122816 -119660656 - MIR SINE MIR 0 262 117 715 305 87 47 chr11 29123188 29123591 -119659881 + LTR16C LTR ERVL 70 488 -3 289 273 192 6 chr11 29123629 29123801 -119659671 - L2 LINE L2 -504 2810 2607 466 322 106 42 chr11 29123886 29124358 -119659114 - LTR33 LTR ERVL -8 513 12 189 0 0 0 chr11 29124541 29124562 -119658910 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 286 276 45 21 chr11 29125076 29125193 -119658279 + MIR SINE MIR 3 122 -94 246 359 129 6 chr11 29125390 29125560 -119657912 + MIR SINE MIR 17 207 -55 200 228 0 35 chr11 29125634 29125691 -119657781 + CT-rich Low_complexity Low_complexity 6 60 0 591 235 140 17 chr11 29125740 29125919 -119657553 - MIR SINE MIR -34 228 28 181 73 24 49 chr11 29126743 29126784 -119656688 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1110 204 15 5 chr11 29126810 29127016 -119656456 + AluJb SINE Alu 87 294 -18 350 240 188 0 chr11 29127595 29127691 -119655781 + L2 LINE L2 3159 3272 0 240 257 14 29 chr11 29128799 29128869 -119654603 + CT-rich Low_complexity Low_complexity 4 72 0 1291 119 38 17 chr11 29129336 29129571 -119653901 - L1P4 LINE L1 -552 5609 5370 190 227 45 0 chr11 29129959 29130047 -119653425 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 206 206 29 15 chr11 29130097 29130165 -119653307 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 520 243 105 52 chr11 29131051 29131261 -119652211 - MIR SINE MIR -27 235 15 23 0 0 0 chr11 29131917 29131940 -119651532 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr11 29132127 29132154 -119651318 + (T)n Simple_repeat Simple_repeat 1 27 0 274 304 116 7 chr11 29132455 29132593 -119650879 + L2 LINE L2 2222 2374 -940 7062 30 8 0 chr11 29132600 29133474 -119649998 - L1PA3 LINE L1 0 6155 5275 34129 49 2 4 chr11 29133474 29137927 -119645545 - L1PA3 LINE L1 -1701 4445 3 334 273 63 49 chr11 29137953 29138040 -119645432 + L2 LINE L2 2394 2485 -829 1813 154 3 39 chr11 29138040 29138404 -119645068 - L1PA14 LINE L1 0 6161 5811 334 273 63 49 chr11 29138404 29138459 -119645013 + L2 LINE L2 2485 2538 -776 408 238 0 0 chr11 29138558 29138663 -119644809 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 619 243 33 0 chr11 29139004 29139156 -119644316 + MER63A DNA MER1_type 53 209 -1 185 116 0 47 chr11 29139414 29139457 -119644015 + (TTG)n Simple_repeat Simple_repeat 2 42 0 573 258 63 0 chr11 29139885 29140044 -119643428 + MER58B DNA MER1_type 173 341 0 1844 215 43 53 chr11 29140055 29140748 -119642724 - Charlie1a DNA MER1_type -3 1452 767 1274 236 78 17 chr11 29140750 29141094 -119642378 - MLT1A1 LTR MaLR 0 365 1 2756 257 82 4 chr11 29141115 29142147 -119641325 + L1MC2 LINE L1 3089 4201 -1945 410 216 0 23 chr11 29142172 29142348 -119641124 + (TA)n Simple_repeat Simple_repeat 1 172 0 984 253 32 42 chr11 29142348 29142851 -119640621 + L1MC2 LINE L1 4205 4702 -1444 12517 26 5 0 chr11 29142851 29144409 -119639063 - L1PA3 LINE L1 -883 5263 3698 7451 32 3 3 chr11 29144409 29145307 -119638165 + L1PA3 LINE L1 5254 6155 0 300 265 45 8 chr11 29145307 29145439 -119638033 + L1MC2 LINE L1 4693 4829 -1317 4203 189 58 19 chr11 29145447 29146831 -119636641 + L1MC2 LINE L1 4907 6338 -6 2597 215 43 38 chr11 29146831 29147575 -119635897 - Charlie1a DNA MER1_type -707 748 1 27 29 0 0 chr11 29147591 29147625 -119635847 + AT_rich Low_complexity Low_complexity 1 34 0 526 275 110 0 chr11 29148269 29148451 -119635021 + L2 LINE L2 3112 3313 0 259 369 10 0 chr11 29148629 29148732 -119634740 - MIR3 SINE MIR -51 157 54 342 267 32 72 chr11 29150114 29150303 -119633169 + MIR SINE MIR 3 183 -61 483 248 14 43 chr11 29150601 29150742 -119632730 - MIR SINE MIR -2 260 124 727 173 0 43 chr11 29152067 29152206 -119631266 - AluJb SINE Alu -16 296 164 437 333 67 13 chr11 29152249 29152474 -119630998 + MLT1K LTR MaLR 317 553 -35 969 198 50 0 chr11 29152489 29152691 -119630781 + MER20 DNA MER1_type 4 215 -4 312 120 0 0 chr11 29153543 29153593 -119629879 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 297 80 0 chr11 29153968 29154106 -119629366 - MIR SINE MIR -110 152 4 2452 103 3 0 chr11 29154190 29154502 -119628970 - AluSp SINE Alu 0 313 1 1476 261 89 12 chr11 29154701 29155118 -119628354 - MLT1F1 LTR MaLR 0 567 119 754 227 0 0 chr11 29155121 29155253 -119628219 - FLAM_A SINE Alu -10 132 1 679 208 0 0 chr11 29155253 29155383 -119628089 - MLT1F1 LTR MaLR -433 134 5 320 339 116 20 chr11 29157455 29157756 -119625716 + L2 LINE L2 2982 3311 -2 198 0 0 0 chr11 29158778 29158800 -119624672 + (A)n Simple_repeat Simple_repeat 1 22 0 343 316 26 57 chr11 29158806 29159055 -119624417 + MIR SINE MIR 5 242 -20 207 258 0 32 chr11 29159084 29159146 -119624326 - MIR SINE MIR 0 262 203 256 282 141 66 chr11 29159228 29159469 -119624003 + MLT1J LTR MaLR 101 359 -152 232 310 14 0 chr11 29160001 29160072 -119623400 + MIR3 SINE MIR 130 201 -7 41242 48 3 2 chr11 29160569 29166719 -119616753 + L1PA4 LINE L1 3 6155 0 1357 183 59 83 chr11 29167186 29167629 -119615843 - MSTB1 LTR MaLR 0 432 1 403 348 66 49 chr11 29168711 29169119 -119614353 - L2 LINE L2 -4 3309 2895 193 301 87 29 chr11 29169273 29169376 -119614096 - MER5B DNA MER1_type -68 110 2 245 246 0 18 chr11 29169298 29169355 -119614117 + MER5A DNA MER1_type 109 164 -25 1436 231 81 14 chr11 29170103 29170536 -119612936 - MLT1C LTR MaLR 0 467 6 2303 143 20 3 chr11 29170618 29170976 -119612496 + THE1B LTR MaLR 1 364 0 1567 188 95 25 chr11 29173806 29174237 -119609235 + MLT1C LTR MaLR 6 466 -1 220 382 26 0 chr11 29174243 29174319 -119609153 - L2 LINE L2 -32 3281 3204 1563 85 0 10 chr11 29174620 29174821 -119608651 - AluY SINE Alu -112 199 1 1518 226 87 24 chr11 29174827 29175242 -119608230 + MLT1D LTR MaLR 65 505 0 270 279 73 0 chr11 29175254 29175322 -119608150 - MIR SINE MIR -178 84 12 6517 200 151 16 chr11 29175364 29176910 -119606562 + MER52A LTR ERV1 1 1755 0 249 317 93 65 chr11 29176927 29177173 -119606299 + MIR SINE MIR 10 262 0 513 246 31 47 chr11 29177407 29177598 -119605874 + LTR33A LTR ERVL 1 188 -335 270 332 49 40 chr11 29177658 29177884 -119605588 + LTR33A LTR ERVL 289 516 -7 197 277 0 0 chr11 29178334 29178381 -119605091 + L2 LINE L2 3193 3239 -33 184 306 0 0 chr11 29178476 29178525 -119604947 - L3 LINE CR1 -1 1576 1528 275 318 62 54 chr11 29179449 29179578 -119603894 + MIR SINE MIR 21 150 -58 294 173 0 0 chr11 29179923 29179975 -119603497 - L2 LINE L2 -1 3312 3261 476 298 66 17 chr11 29180342 29180523 -119602949 - MIR SINE MIR 0 262 73 323 324 182 35 chr11 29181473 29181643 -119601829 - MER91A DNA MER1_type -1 195 1 589 314 30 30 chr11 29182632 29182847 -119600625 + MIR SINE MIR 27 243 -19 673 336 52 0 chr11 29184064 29184335 -119599137 + LTR33 LTR ERVL 12 296 -225 306 348 45 0 chr11 29184508 29184620 -119598852 - MIR SINE MIR -128 134 18 560 263 86 11 chr11 29184695 29184870 -119598602 + MIR SINE MIR 5 192 -70 920 261 27 37 chr11 29184876 29185244 -119598228 + MLT1A1 LTR MaLR 1 365 0 438 287 120 12 chr11 29185363 29185530 -119597942 - L2 LINE L2 -736 2578 2394 431 370 37 0 chr11 29185529 29185691 -119597781 - MIR SINE MIR -72 190 23 * 379 361 13 13 chr11 29185836 29185994 -119597478 - MIR3 SINE MIR -21 187 30 206 339 17 0 chr11 29186452 29186511 -119596961 - L2 LINE L2 -9 3263 3204 270 375 84 21 chr11 29186743 29186980 -119596492 - L2 LINE L2 -341 2973 2722 270 290 116 7 chr11 29187043 29187181 -119596291 - MLT1I LTR MaLR -14 395 243 2092 126 0 0 chr11 29187403 29187689 -119595783 - AluSx SINE Alu -26 286 1 336 102 0 0 chr11 29187731 29187780 -119595692 + (TG)n Simple_repeat Simple_repeat 2 50 0 5025 14 0 0 chr11 29188198 29188768 -119594704 + L1PA3 LINE L1 5586 6155 0 234 317 57 41 chr11 29189321 29189444 -119594028 - L2 LINE L2 0 3313 3189 226 286 188 18 chr11 29189457 29189569 -119593903 - L2 LINE L2 -1 3312 3182 515 316 24 53 chr11 29189983 29190189 -119593283 - MIR SINE MIR 0 262 63 233 157 0 39 chr11 29190796 29190847 -119592625 + CT-rich Low_complexity Low_complexity 6 54 0 21 0 0 0 chr11 29190866 29190887 -119592585 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr11 29191243 29191273 -119592199 + (T)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr11 29191539 29191569 -119591903 + AT_rich Low_complexity Low_complexity 1 30 0 2304 97 0 31 chr11 29192412 29192753 -119590719 + AluY SINE Alu 1 331 0 432 337 49 6 chr11 29192753 29192916 -119590556 + MIR SINE MIR 20 189 -73 782 215 25 12 chr11 29193494 29193657 -119589815 + MER90 LTR ERV1 4 168 -446 461 185 59 92 chr11 29193672 29193791 -119589681 + AluJo SINE Alu 105 219 -93 186 43 0 0 chr11 29193816 29193839 -119589633 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1691 209 34 75 chr11 29193841 29194058 -119589414 + MER90 LTR ERV1 192 416 -198 2057 92 0 0 chr11 29194058 29194320 -119589152 + AluSq SINE Alu 42 303 -10 1691 209 34 75 chr11 29194320 29194485 -119588987 + MER90 LTR ERV1 416 556 -58 423 0 0 0 chr11 29194485 29194532 -119588940 + (TA)n Simple_repeat Simple_repeat 2 48 0 1691 209 34 75 chr11 29194532 29194589 -119588883 + MER90 LTR ERV1 556 614 0 1970 117 94 26 chr11 29195178 29195519 -119587953 + THE1B LTR MaLR 1 364 0 2408 100 0 0 chr11 29195895 29196205 -119587267 - AluSg SINE Alu 0 310 1 382 289 75 6 chr11 29196303 29196462 -119587010 + MIR SINE MIR 52 221 -41 1603 251 50 7 chr11 29196690 29197133 -119586339 - MLT1C LTR MaLR 0 467 6 355 396 114 0 chr11 29197703 29197905 -119585567 - MER115 DNA AcHobo -319 374 150 637 202 50 0 chr11 29198226 29198345 -119585127 + FLAM_A SINE Alu 1 125 -8 27 96 0 0 chr11 29199652 29199735 -119583737 + AT_rich Low_complexity Low_complexity 1 83 0 1587 155 126 32 chr11 29200125 29200466 -119583006 + THE1C LTR MaLR 3 375 0 6085 195 19 6 chr11 29200558 29201742 -119581730 - L1PA15 LINE L1 -1 6164 4937 2046 148 0 3 chr11 29201742 29201872 -119581600 + AluSq SINE Alu 1 130 -183 189 0 0 0 chr11 29201872 29201893 -119581579 + (TA)n Simple_repeat Simple_repeat 1 21 0 2046 148 0 3 chr11 29201893 29202072 -119581400 + AluSq SINE Alu 130 309 -4 6085 195 19 6 chr11 29202072 29203148 -119580324 - L1PA15 LINE L1 -1228 4937 3877 5231 234 45 6 chr11 29203151 29204561 -119578911 + L1PA15 LINE L1 2414 3878 -2268 360 333 104 0 chr11 29204958 29205102 -119578370 + MIR SINE MIR 100 258 -4 2879 13 0 0 chr11 29205331 29205649 -119577823 - AluYb8 SINE Alu 0 318 1 341 192 25 0 chr11 29205683 29205771 -119577701 - MLT1A1 LTR MaLR 0 396 277 857 172 91 122 chr11 29206647 29206967 -119576505 - MLT1A1 LTR MaLR -55 310 1 1003 150 77 21 chr11 29207310 29207502 -119575970 + THE1C LTR MaLR 1 219 -209 1071 117 0 0 chr11 29207502 29207682 -119575790 + (TC)n Simple_repeat Simple_repeat 1 180 0 1003 150 77 21 chr11 29207682 29207735 -119575737 + THE1C LTR MaLR 219 268 -160 381 158 0 0 chr11 29207735 29207817 -119575655 + CT-rich Low_complexity Low_complexity 2 83 0 986 130 45 39 chr11 29207817 29208016 -119575456 + THE1C LTR MaLR 199 375 0 253 290 62 80 chr11 29208078 29208254 -119575218 - MIR SINE MIR -26 236 64 4981 243 64 73 chr11 29208304 29210693 -119572779 + L1MA7 LINE L1 33 2209 -4174 1322 164 9 0 chr11 29210703 29210922 -119572550 + 7SLRNA srpRNA srpRNA 8 228 -92 11453 201 70 30 chr11 29210992 29211985 -119571487 + L1MA7 LINE L1 2121 3073 -3454 1706 162 3 40 chr11 29211985 29212282 -119571190 + AluJo SINE Alu 1 286 -26 11453 201 70 30 chr11 29212282 29213988 -119569484 + L1MA7 LINE L1 3073 4710 -1817 1840 115 140 19 chr11 29213988 29214310 -119569162 + THE1B LTR MaLR 4 364 0 11630 95 10 1 chr11 29214310 29215874 -119567598 + THE1B-int LTR MaLR 1 1579 -1 1817 139 118 21 chr11 29215875 29216207 -119567265 + THE1B LTR MaLR 1 364 0 11453 201 70 30 chr11 29216207 29217703 -119565769 + L1MA7 LINE L1 4709 6503 -24 26 0 0 0 chr11 29217713 29217739 -119565733 + AT_rich Low_complexity Low_complexity 1 26 0 307 274 14 0 chr11 29218043 29218116 -119565356 - MER41D LTR ERV1 -88 469 396 7197 114 139 92 chr11 29218305 29219927 -119563545 - pTR5 LTR ERV1 0 2438 742 2015 176 30 18 chr11 29221122 29221520 -119561952 - MER57A LTR ERV1 0 403 1 238 305 25 25 chr11 29221587 29221705 -119561767 - LTR67 LTR ERVL -6 551 434 222 233 192 14 chr11 29222034 29222107 -119561365 + MIR SINE MIR 156 241 -21 * 307 339 45 0 chr11 29222105 29222217 -119561255 + L2 LINE L2 3186 3302 -11 378 289 87 18 chr11 29223000 29223180 -119560292 + MIR SINE MIR 27 220 -42 196 360 29 69 chr11 29223291 29223466 -119560006 + MIR SINE MIR 40 207 -55 238 333 145 0 chr11 29223521 29223638 -119559834 - MIR SINE MIR -12 250 117 1544 233 60 35 chr11 29223660 29224111 -119559361 - MLT1C LTR MaLR -5 462 1 184 396 0 22 chr11 29224181 29224272 -119559200 - MIR SINE MIR -100 108 20 420 337 17 35 chr11 29224433 29224605 -119558867 + MLT1K LTR MaLR 82 250 -338 1045 157 52 4 chr11 29224827 29225057 -119558415 - L1MA4 LINE L1 -6 6294 6054 5477 98 5 19 chr11 29225059 29225858 -119557614 + HERVH LTR ERV1 4233 5020 -2693 2535 105 46 30 chr11 29225841 29226279 -119557193 + HERVH LTR ERV1 7269 7713 0 * 1813 102 21 9 chr11 29226279 29226634 -119556838 + LTR7 LTR ERV1 1 412 -38 453 246 0 0 chr11 29226861 29226961 -119556511 - MLT2C2 LTR ERVL -40 424 258 7130 72 167 1 chr11 29226979 29228027 -119555445 - MER11B LTR ERVK -14 1222 1 1371 181 35 0 chr11 29228027 29228280 -119555192 - MLT2C2 LTR ERVL -202 262 1 642 338 20 10 chr11 29228316 29228520 -119554952 - L2 LINE L2 -262 3051 2846 442 294 0 37 chr11 29228660 29228796 -119554676 + L2 LINE L2 3182 3312 -1 2190 233 99 31 chr11 29229510 29230503 -119552969 + MER63D DNA MER1_type 2 1061 0 524 72 0 0 chr11 29231879 29231948 -119551524 + MER57A LTR ERV1 8 76 -327 2136 191 5 0 chr11 29231948 29232326 -119551146 + MER57A LTR ERV1 24 403 0 874 166 30 24 chr11 29232707 29232876 -119550596 - MER93b LTR ERV1 0 373 204 3167 187 42 24 chr11 29232925 29233968 -119549504 + L1PB1 LINE L1 995 2018 -4849 459 143 0 0 chr11 29233968 29234045 -119549427 + MADE1 DNA Mariner 1 77 -3 3167 187 42 24 chr11 29234045 29236821 -119546651 + L1PB1 LINE L1 2018 4744 -2123 261 0 0 0 chr11 29236821 29236850 -119546622 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 3167 187 42 24 chr11 29236850 29238165 -119545307 + L1PB1 LINE L1 4744 6517 -350 303 28 0 0 chr11 29238165 29238201 -119545271 + (CA)n Simple_repeat Simple_repeat 2 37 0 3167 187 42 24 chr11 29238201 29238554 -119544918 + L1PB1 LINE L1 6517 6862 -5 1038 178 18 32 chr11 29238555 29238774 -119544698 - MER93b LTR ERV1 -157 216 1 1758 186 3 0 chr11 29238954 29239245 -119544227 + AluJb SINE Alu 5 296 -16 424 331 63 56 chr11 29239586 29239793 -119543679 + MLT1J LTR MaLR 131 342 -169 1904 160 3 40 chr11 29239793 29240143 -119543329 - MER1B DNA MER1_type 0 337 1 424 331 63 56 chr11 29240143 29240222 -119543250 + MLT1J LTR MaLR 342 419 -92 605 245 82 33 chr11 29240280 29240464 -119543008 - MIR SINE MIR -65 197 5 203 298 212 58 chr11 29242029 29242355 -119541117 - L2 LINE L2 0 3313 2938 288 244 47 47 chr11 29243188 29243360 -119540112 - Charlie7 DNA MER1_type -1 2611 2440 315 192 0 0 chr11 29243519 29243592 -119539880 + CT-rich Low_complexity Low_complexity 6 78 0 181 344 16 0 chr11 29244605 29244666 -119538806 - L2 LINE L2 -758 2556 2495 595 342 30 19 chr11 29245565 29245805 -119537667 + MIR SINE MIR 3 242 -20 396 0 0 0 chr11 29247615 29247659 -119535813 + (CA)n Simple_repeat Simple_repeat 2 45 0 2292 136 3 9 chr11 29247888 29248227 -119535245 + MER1B DNA MER1_type 1 337 0 1319 204 93 41 chr11 29248237 29248699 -119534773 - Charlie4a DNA MER1_type 0 508 23 359 338 54 27 chr11 29248786 29249008 -119534464 + MIR SINE MIR 1 228 -34 429 278 8 60 chr11 29250303 29250436 -119533036 - L2 LINE L2 0 3272 3147 24 67 0 0 chr11 29250539 29250584 -119532888 + AT_rich Low_complexity Low_complexity 1 45 0 332 311 48 0 chr11 29251347 29251450 -119532022 + MIR3 SINE MIR 70 177 -31 1317 236 68 95 chr11 29251689 29252249 -119531223 - MLT2E LTR ERVL -15 613 69 272 331 66 33 chr11 29252837 29253018 -119530454 - MIR SINE MIR -56 206 20 411 363 75 30 chr11 29253744 29254212 -119529260 + HERV16 LTR ERVL 4796 5284 -370 481 300 30 0 chr11 29254216 29254416 -119529056 + HERV16 LTR ERVL 4789 4994 -2 1121 290 74 15 chr11 29254471 29254874 -119528598 + LTR16B LTR ERVL 38 464 0 216 0 0 0 chr11 29255658 29255682 -119527790 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr11 29256742 29256763 -119526709 + AT_rich Low_complexity Low_complexity 1 21 0 186 236 382 11 chr11 29256785 29256874 -119526598 + L2 LINE L2 3151 3272 0 405 144 56 0 chr11 29258106 29258196 -119525276 - L1MB7 LINE L1 -7 6177 6083 294 183 0 0 chr11 29258233 29258293 -119525179 - L1MA6 LINE L1 0 6300 6241 222 37 0 0 chr11 29258299 29258326 -119525146 + (TG)n Simple_repeat Simple_repeat 2 28 0 1373 199 11 53 chr11 29258326 29258608 -119524864 - AluJo SINE Alu -42 270 1 600 220 0 0 chr11 29258608 29258726 -119524746 - L1MA5 LINE L1 -46 6254 6137 2125 172 3 3 chr11 29258967 29259333 -119524139 - MER47A DNA MER2_type 0 366 1 32 0 0 0 chr11 29260170 29260202 -119523270 + AT_rich Low_complexity Low_complexity 1 32 0 330 302 70 50 chr11 29260306 29260606 -119522866 + MLT1J1 LTR MaLR 101 417 -2 34 42 0 0 chr11 29262198 29262246 -119521226 + AT_rich Low_complexity Low_complexity 1 48 0 910 216 81 24 chr11 29262270 29262603 -119520869 - L1MC5 LINE L1 -312 7649 7298 189 0 0 0 chr11 29262610 29262631 -119520841 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 24813 64 6 4 chr11 29263577 29267691 -119515781 - L1PA6 LINE L1 0 6154 2031 6803 60 13 9 chr11 29267691 29269126 -119514346 - L1PA6 LINE L1 -14 6140 4700 953 240 147 57 chr11 29269928 29270437 -119513035 - MLT1H1 LTR MaLR 0 555 1 368 212 27 58 chr11 29270815 29271048 -119512424 + Charlie7 DNA MER1_type 39 2612 0 201 330 21 21 chr11 29271701 29271798 -119511674 + MIR3 SINE MIR 82 178 -30 1005 310 46 33 chr11 29272252 29272710 -119510762 - LTR16B LTR ERVL 0 464 1 2119 117 7 7 chr11 29272862 29273162 -119510310 + AluSx SINE Alu 1 300 -12 409 331 26 19 chr11 29273178 29273332 -119510140 - MIR SINE MIR -40 222 68 197 275 0 0 chr11 29273770 29273810 -119509662 + L2 LINE L2 3147 3186 -86 818 270 44 24 chr11 29273908 29274165 -119509307 - MIR SINE MIR 0 262 4 736 220 40 0 chr11 29274689 29274839 -119508633 + MER58B DNA MER1_type 179 334 -7 536 340 42 5 chr11 29274856 29275071 -119508401 + MIR SINE MIR 29 251 -11 2687 131 19 2 chr11 29275842 29276263 -119507209 + MSTA LTR MaLR 1 428 0 325 313 208 5 chr11 29276263 29276455 -119507017 - MIR SINE MIR -8 254 24 198 400 40 32 chr11 29277291 29277416 -119506056 - L2 LINE L2 -36 3236 3111 260 381 142 0 chr11 29277595 29277792 -119505680 + L3 LINE CR1 1352 1576 -1 21 36 0 0 chr11 29277831 29277859 -119505613 + AT_rich Low_complexity Low_complexity 1 28 0 269 235 174 68 chr11 29278226 29278358 -119505114 - MLT1H LTR MaLR -8 541 396 573 300 57 32 chr11 29278412 29278695 -119504777 - MLT1H LTR MaLR -259 290 1 277 265 40 99 chr11 29280647 29280798 -119502674 - MIR SINE MIR -26 236 95 * 372 276 51 0 chr11 29280780 29280878 -119502594 + L2 LINE L2 3208 3310 -3 25 0 0 0 chr11 29281402 29281427 -119502045 + AT_rich Low_complexity Low_complexity 1 25 0 1942 193 25 6 chr11 29281501 29281859 -119501613 - MLT1A1 LTR MaLR 0 365 1 11683 26 0 0 chr11 29282197 29284342 -119499130 - L1PA3 LINE L1 0 6155 4014 210 139 0 0 chr11 29284694 29284730 -119498742 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 495 238 43 55 chr11 29284932 29285096 -119498376 - MIR SINE MIR -70 192 31 2500 68 0 0 chr11 29285885 29286192 -119497280 + AluY SINE Alu 1 307 -4 284 309 60 23 chr11 29286193 29286343 -119497129 + MIR SINE MIR 37 191 -64 321 296 91 55 chr11 29286372 29286571 -119496901 - MIR SINE MIR -9 253 48 185 191 221 0 chr11 29286663 29286731 -119496741 - MIR SINE MIR -14 248 166 61 52 0 0 chr11 29286776 29286872 -119496600 + AT_rich Low_complexity Low_complexity 1 96 0 1638 203 10 0 chr11 29286872 29287162 -119496310 - AluJb SINE Alu -19 293 1 3836 153 13 19 chr11 29287535 29287894 -119495578 - L1PB3 LINE L1 -4 6150 5790 957 42 0 0 chr11 29287894 29288012 -119495460 + (TA)n Simple_repeat Simple_repeat 1 118 0 3836 153 13 19 chr11 29288012 29288068 -119495404 - L1PB3 LINE L1 -364 5790 5735 2378 96 0 0 chr11 29288068 29288370 -119495102 - AluSp SINE Alu -11 302 1 3836 153 13 19 chr11 29288370 29288645 -119494827 - L1PB3 LINE L1 -419 5735 5463 292 301 26 26 chr11 29288956 29289069 -119494403 - L2 LINE L2 0 3272 3160 181 265 0 29 chr11 29290179 29290247 -119493225 - MIR SINE MIR -66 196 131 241 336 134 22 chr11 29290356 29290490 -119492982 + L2 LINE L2 3116 3264 -8 215 224 0 0 chr11 29290673 29290722 -119492750 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 231 133 0 0 chr11 29291851 29291896 -119491576 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1957 124 10 33 chr11 29292597 29292896 -119490576 + AluSq SINE Alu 1 292 -21 681 336 154 0 chr11 29293231 29293582 -119489890 + LTR16C LTR ERVL 74 478 -13 753 333 16 0 chr11 29293669 29293912 -119489560 - MIR SINE MIR 0 262 16 455 301 122 41 chr11 29295500 29296117 -119487355 + L2 LINE L2 2630 3311 -2 267 265 15 0 chr11 29296118 29296186 -119487286 + GA-rich Low_complexity Low_complexity 1 69 0 195 139 0 0 chr11 29296436 29296472 -119487000 + (ATG)n Simple_repeat Simple_repeat 3 38 0 467 293 50 50 chr11 29296818 29296999 -119486473 + MIR SINE MIR 28 208 -54 399 298 30 66 chr11 29298029 29298227 -119485245 - MIR SINE MIR -71 191 1 347 312 173 10 chr11 29299342 29299544 -119483928 + MIR SINE MIR 14 248 -14 2163 111 0 0 chr11 29299560 29299849 -119483623 - AluSc SINE Alu -20 289 1 336 361 33 0 chr11 29301149 29301271 -119482201 - L3 LINE CR1 -22 1555 1430 277 284 160 31 chr11 29303832 29304026 -119479446 + MIR SINE MIR 28 246 -16 254 312 117 39 chr11 29304006 29304160 -119479312 - MIR SINE MIR -60 202 37 * 404 215 19 37 chr11 29304160 29304267 -119479205 + MER58B DNA MER1_type 229 333 -8 868 166 20 85 chr11 29306218 29306417 -119477055 + MER5A DNA MER1_type 3 188 -1 30 0 0 0 chr11 29306562 29306592 -119476880 + AT_rich Low_complexity Low_complexity 1 30 0 471 279 44 103 chr11 29307815 29307868 -119475604 + L1ME3A LINE L1 1220 1275 -5369 1751 175 10 3 chr11 29307868 29308165 -119475307 - AluJb SINE Alu -10 302 4 471 279 44 103 chr11 29308165 29308565 -119474907 + L1ME3A LINE L1 1275 1763 -4881 351 359 23 0 chr11 29308565 29308821 -119474651 + L1ME3A LINE L1 1661 1922 -4722 389 219 62 0 chr11 29308929 29309025 -119474447 - L1MCc LINE L1 -5201 1222 1121 979 122 48 0 chr11 29309080 29309227 -119474245 - MER57B LTR ERV1 -275 159 6 994 114 54 0 chr11 29309239 29309388 -119474084 - MER57B LTR ERV1 -277 157 1 256 272 123 0 chr11 29309398 29309479 -119473993 - L1MCc LINE L1 -5517 906 816 270 286 27 54 chr11 29309527 29309712 -119473760 - L1MCc LINE L1 -6102 321 142 520 334 31 70 chr11 29309806 29310294 -119473178 - HERVL LTR ERVL -1807 3847 3379 2526 143 7 49 chr11 29310301 29310748 -119472724 + MSTA LTR MaLR 1 428 0 347 270 135 78 chr11 29310812 29310955 -119472517 + L1ME3A LINE L1 2328 2461 -4364 371 298 72 33 chr11 29310955 29311136 -119472336 - MER5A DNA MER1_type 0 189 2 347 270 135 78 chr11 29311136 29311214 -119472258 + L1ME3A LINE L1 2461 2533 -4292 204 40 0 0 chr11 29311214 29311239 -119472233 + (TAA)n Simple_repeat Simple_repeat 2 26 0 347 270 135 78 chr11 29311239 29311335 -119472137 + L1ME3A LINE L1 2533 2664 -4161 765 282 49 44 chr11 29311438 29311704 -119471768 + L1ME3A LINE L1 2766 3029 -3615 1651 180 3 23 chr11 29311704 29312009 -119471463 + AluSx SINE Alu 5 303 -9 765 282 49 44 chr11 29312009 29312291 -119471181 + L1ME3A LINE L1 3029 3317 -3327 371 217 129 75 chr11 29312325 29312552 -119470920 - MLT1D LTR MaLR -202 265 8 1859 279 93 43 chr11 29312555 29313530 -119469942 + L1ME3A LINE L1 3719 4839 -1805 1063 200 132 71 chr11 29313530 29313895 -119469577 + MLT1B LTR MaLR 1 387 -3 1859 279 93 43 chr11 29313895 29314572 -119468900 + L1ME3A LINE L1 4839 5481 -1163 265 229 0 62 chr11 29314605 29314701 -119468771 - L1MC4 LINE L1 -1339 6703 6614 243 214 71 0 chr11 29314697 29314781 -119468691 - L1MC4 LINE L1 -1339 6703 6614 * 234 261 23 0 chr11 29314705 29314793 -119468679 + L1MC4 LINE L1 6614 6703 -1339 * 195 235 0 0 chr11 29314793 29314844 -119468628 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 498 281 80 31 chr11 29314861 29315393 -119468079 + L1ME3A LINE L1 5522 6084 -578 2332 151 54 14 chr11 29315393 29315817 -119467655 + MER65A LTR ERV1 1 441 -4 903 279 16 10 chr11 29315822 29316134 -119467338 + L1ME3A LINE L1 6081 6394 -274 808 262 18 18 chr11 29316136 29316365 -119467107 + L1ME3A LINE L1 6434 6662 -6 418 270 43 17 chr11 29316408 29316523 -119466949 - L2 LINE L2 0 3313 3196 259 281 122 0 chr11 29316691 29316773 -119466699 + LTR33 LTR ERVL 6 97 -424 293 205 45 10 chr11 29316801 29316934 -119466538 + MER58B DNA MER1_type 173 341 0 598 282 28 37 chr11 29317280 29317496 -119465976 - MIR SINE MIR -1 261 48 227 114 23 0 chr11 29318518 29318562 -119464910 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 330 75 9 chr11 29320827 29320933 -119462539 + L2 LINE L2 2796 2908 -406 626 271 49 31 chr11 29321100 29321325 -119462147 - MIR SINE MIR -32 230 2 532 337 53 21 chr11 29322015 29322258 -119461214 + MIR SINE MIR 11 261 -1 468 416 64 16 chr11 29322797 29323232 -119460240 + L2 LINE L2 2817 3272 0 4789 104 1 8 chr11 29323727 29324435 -119459037 - L1PA14 LINE L1 -5 6156 5454 527 287 50 11 chr11 29324907 29325088 -119458384 + MIR SINE MIR 75 262 0 363 310 71 7 chr11 29325761 29325916 -119457556 - MIR3 SINE MIR -6 202 38 557 315 35 10 chr11 29326022 29326219 -119457253 + MIR SINE MIR 5 206 -56 466 172 0 11 chr11 29326219 29326312 -119457160 - L1MB3 LINE L1 -12 6171 6080 1390 251 43 3 chr11 29326350 29326696 -119456776 + MLT1A1 LTR MaLR 1 360 -5 470 309 100 26 chr11 29327176 29327406 -119456066 + MIR SINE MIR 5 251 -11 370 323 15 31 chr11 29327960 29328090 -119455382 + L2 LINE L2 3184 3311 -2 1931 156 8 50 chr11 29328544 29328923 -119454549 - MLT1A1 LTR MaLR -2 363 1 405 0 0 0 chr11 29329745 29329790 -119453682 + (CA)n Simple_repeat Simple_repeat 2 46 0 2211 237 74 26 chr11 29330977 29331666 -119451806 - L1ME1 LINE L1 -4 6162 5441 4060 140 38 68 chr11 29331666 29332934 -119450538 + pTR5 LTR ERV1 744 2295 -143 2387 229 90 43 chr11 29332945 29333040 -119450432 - L1ME1 LINE L1 -735 5449 5360 2247 118 3 0 chr11 29333040 29333346 -119450126 - AluSx SINE Alu -5 307 1 2387 229 90 43 chr11 29333346 29333790 -119449682 - L1ME1 LINE L1 -824 5360 4938 2329 102 0 13 chr11 29333790 29334104 -119449368 - AluSg SINE Alu 0 310 1 2387 229 90 43 chr11 29334104 29334228 -119449244 - L1ME1 LINE L1 -1246 4938 4821 2327 99 3 3 chr11 29334228 29334541 -119448931 - AluSq SINE Alu 0 313 1 2387 229 90 43 chr11 29334541 29335054 -119448418 - L1ME1 LINE L1 -1363 4821 4226 2836 127 13 16 chr11 29335082 29335531 -119447941 + MER83 LTR ERV1 1 448 0 1273 206 103 7 chr11 29335532 29335704 -119447768 + MER2 DNA MER2_type 11 165 -180 1705 108 9 4 chr11 29335704 29335935 -119447537 - AluSg SINE Alu -17 293 62 1273 206 103 7 chr11 29335935 29336054 -119447418 + MER2 DNA MER2_type 165 330 -15 291 214 107 0 chr11 29336116 29336219 -119447253 - L1ME1 LINE L1 -1929 4217 4104 300 281 119 19 chr11 29336287 29336497 -119446975 + L1M4 LINE L1 3224 3454 -2692 1013 233 33 70 chr11 29336503 29336834 -119446638 + L1M4 LINE L1 3497 3815 -2331 2679 106 0 8 chr11 29336873 29337251 -119446221 - THE1C LTR MaLR 0 375 1 330 371 13 19 chr11 29338357 29338516 -119444956 + MIR SINE MIR 3 160 -102 337 302 71 40 chr11 29338981 29339107 -119444365 + L2 LINE L2 3179 3308 -5 1850 191 16 8 chr11 29339206 29339578 -119443894 - L1PB4 LINE L1 -2 6154 5780 181 191 0 71 chr11 29340391 29340433 -119443039 - L2 LINE L2 -12 3301 3263 * 305 236 162 54 chr11 29340402 29340550 -119442922 - MIR SINE MIR -14 248 85 22 70 0 0 chr11 29340765 29340808 -119442664 + AT_rich Low_complexity Low_complexity 1 43 0 363 44 0 0 chr11 29340829 29340874 -119442598 + (ATG)n Simple_repeat Simple_repeat 2 46 0 451 247 222 26 chr11 29341090 29341284 -119442188 + MIR SINE MIR 17 248 -14 241 214 24 107 chr11 29341427 29341511 -119441961 - L2 LINE L2 -5 3267 3191 225 359 0 0 chr11 29342327 29342391 -119441081 - L2 LINE L2 0 3272 3209 311 290 40 40 chr11 29342527 29342627 -119440845 + MIR SINE MIR 33 132 -130 538 314 59 8 chr11 29343485 29343721 -119439751 - MIR SINE MIR -14 248 1 242 308 43 76 chr11 29344218 29344403 -119439069 - MIR SINE MIR -20 242 64 628 272 159 30 chr11 29344486 29344999 -119438473 + MLT1G LTR MaLR 3 590 0 1505 296 73 24 chr11 29345012 29345357 -119438115 - MLT1E LTR MaLR -2 591 208 183 42 0 0 chr11 29345357 29345381 -119438091 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 1505 296 73 24 chr11 29345381 29345583 -119437889 - MLT1E LTR MaLR -385 208 17 1515 209 16 44 chr11 29345584 29345947 -119437525 - MLT1A1 LTR MaLR -12 353 1 21 0 0 0 chr11 29345960 29345981 -119437491 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 29347134 29347162 -119436310 + AT_rich Low_complexity Low_complexity 1 28 0 260 288 70 33 chr11 29347195 29347438 -119436034 + L1MC/D LINE L1 4722 4973 -1173 778 286 11 18 chr11 29347706 29347979 -119435493 + L1MC/D LINE L1 5319 5589 -2219 719 201 169 0 chr11 29349287 29349476 -119433996 - MER67D LTR ERV1 0 514 294 4259 173 40 12 chr11 29349489 29350310 -119433162 - L1PA16 LINE L1 0 6166 5323 6311 85 10 3 chr11 29350310 29351443 -119432029 - L1PA13 LINE L1 -3 6160 5016 448 315 20 51 chr11 29351565 29351819 -119431653 - L1M4 LINE L1 -1112 5034 4789 38 68 0 0 chr11 29352212 29352285 -119431187 + AT_rich Low_complexity Low_complexity 1 73 0 1375 229 18 4 chr11 29352302 29352581 -119430891 - AluJo SINE Alu -19 283 1 254 234 171 27 chr11 29354454 29354565 -119428907 - MIR SINE MIR -10 252 126 290 25 0 25 chr11 29355430 29355470 -119428002 + (TC)n Simple_repeat Simple_repeat 2 40 0 470 245 187 26 chr11 29356676 29356831 -119426641 - MER5A DNA MER1_type 0 189 10 427 296 60 40 chr11 29357079 29357278 -119426194 - MIR SINE MIR -40 222 20 182 286 36 98 chr11 29357238 29357350 -119426122 + MIR SINE MIR 41 145 -63 * 325 293 72 24 chr11 29357370 29357537 -119425935 + MER5B DNA MER1_type 1 175 -3 1977 162 0 0 chr11 29358838 29359135 -119424337 - AluJb SINE Alu -14 298 2 2385 162 36 2 chr11 29359963 29360377 -119423095 + MSTA LTR MaLR 1 428 0 9231 168 30 9 chr11 29360377 29361980 -119421492 + MSTA-int LTR MaLR 1 1636 -15 1358 168 31 12 chr11 29362012 29362268 -119421204 + MSTA LTR MaLR 3 263 -165 587 164 36 0 chr11 29362268 29362378 -119421094 - L1M3f LINE L1 -4684 644 531 1086 179 0 0 chr11 29362380 29362559 -119420913 + MSTA LTR MaLR 250 428 0 678 306 156 24 chr11 29362620 29362980 -119420492 + LTR33 LTR ERVL 10 384 -139 3547 172 11 67 chr11 29363362 29364064 -119419408 - L1M3f LINE L1 -4660 668 6 1759 180 71 45 chr11 29364230 29364652 -119418820 + Tigger2a DNA MER2_type 1 433 -1 2976 63 5 0 chr11 29364665 29365046 -119418426 + L1PA7 LINE L1 5772 6154 0 315 71 0 0 chr11 29366596 29366638 -119416834 + (TG)n Simple_repeat Simple_repeat 2 43 0 50 31 0 0 chr11 29366830 29366894 -119416578 + AT_rich Low_complexity Low_complexity 1 64 0 2386 77 3 0 chr11 29368981 29369291 -119414181 + AluY SINE Alu 1 311 0 539 291 141 60 chr11 29369646 29370192 -119413280 - MLT1E LTR MaLR -3 590 1 183 162 0 0 chr11 29370213 29370250 -119413222 + A-rich Low_complexity Low_complexity 1 37 0 214 203 0 85 chr11 29370639 29370698 -119412774 + MIR SINE MIR 208 261 -1 2091 92 7 46 chr11 29371920 29372226 -119411246 - AluSq SINE Alu -15 298 5 298 268 37 12 chr11 29372890 29372972 -119410500 + MIR3 SINE MIR 4 87 -121 28 61 0 0 chr11 29374393 29374442 -119409030 + AT_rich Low_complexity Low_complexity 1 49 0 38 39 0 39 chr11 29374463 29374541 -119408931 + AT_rich Low_complexity Low_complexity 1 75 0 240 202 146 11 chr11 29375236 29375325 -119408147 - HAL1 LINE L1 -856 1651 1551 1515 227 79 36 chr11 29375335 29375920 -119407552 - HAL1 LINE L1 -1046 1461 852 260 159 204 23 chr11 29376004 29376092 -119407380 + L1ME LINE L1 5385 5488 -682 1526 241 65 45 chr11 29376149 29376733 -119406739 + L1ME2 LINE L1 5442 6037 -127 359 61 20 0 chr11 29376987 29377036 -119406436 - MADE1 DNA Mariner -25 55 6 22 0 0 0 chr11 29377173 29377195 -119406277 + AT_rich Low_complexity Low_complexity 1 22 0 190 326 51 58 chr11 29378025 29378163 -119405309 - MIR SINE MIR -74 188 52 427 232 18 9 chr11 29381445 29381557 -119401915 + MER117 DNA MER1_type 1 113 -84 289 230 109 52 chr11 29381640 29381800 -119401672 + MIR3 SINE MIR 3 172 -59 278 262 24 0 chr11 29384354 29384438 -119399034 + GA-rich Low_complexity Low_complexity 1 86 0 1192 199 119 44 chr11 29384778 29385139 -119398333 + MER89 LTR ERV1 172 559 0 1477 109 19 0 chr11 29385705 29385916 -119397556 - L1PA10 LINE L1 -16 6152 5938 1973 186 3 19 chr11 29386240 29386611 -119396861 + MLT1A1 LTR MaLR 1 365 0 544 191 25 157 chr11 29387796 29388031 -119395441 + L2 LINE L2 3110 3313 0 288 282 128 8 chr11 29388119 29388236 -119395236 + MIR SINE MIR 73 203 -59 22 35 0 0 chr11 29388445 29388474 -119394998 + AT_rich Low_complexity Low_complexity 1 29 0 229 272 148 0 chr11 29388846 29388927 -119394545 + L2 LINE L2 3221 3313 0 655 124 0 0 chr11 29389182 29389279 -119394193 + L1P4 LINE L1 5594 5690 -476 630 269 58 93 chr11 29389380 29390269 -119393203 + L1MEc LINE L1 1545 2402 -3994 1461 214 27 63 chr11 29390287 29390810 -119392662 + L1M4 LINE L1 4323 4826 -1320 * 21751 41 3 2 chr11 29390802 29394483 -119388989 + L1PA4 LINE L1 2471 6148 -7 516 226 0 0 chr11 29394485 29394587 -119388885 - MER7A DNA MER2_type -245 101 2 294 83 0 0 chr11 29395435 29395471 -119388001 + (A)n Simple_repeat Simple_repeat 1 36 0 361 332 42 42 chr11 29395513 29395820 -119387652 + L1MEc LINE L1 1548 1854 -4542 313 282 54 54 chr11 29395909 29396150 -119387322 + L1MEc LINE L1 2183 2399 -3816 1843 240 125 15 chr11 29396169 29396689 -119386783 - MLT1E1 LTR MaLR -20 634 58 483 253 82 0 chr11 29396715 29396885 -119386587 + L1MEc LINE L1 2391 2574 -3641 411 222 11 11 chr11 29397073 29397253 -119386219 + (TA)n Simple_repeat Simple_repeat 1 180 0 215 110 93 17 chr11 29397285 29397403 -119386069 + (TA)n Simple_repeat Simple_repeat 1 127 0 40 49 0 0 chr11 29397515 29397576 -119385896 + AT_rich Low_complexity Low_complexity 1 61 0 9165 29 0 1 chr11 29397963 29399830 -119383642 + L1PA4 LINE L1 4285 6152 -3 249 305 12 0 chr11 29400007 29400089 -119383383 - MIR SINE MIR -8 254 172 211 392 7 28 chr11 29400566 29400709 -119382763 + MIR3 SINE MIR 7 146 -62 273 349 46 9 chr11 29400733 29400842 -119382630 + MIR SINE MIR 11 123 -139 26 50 0 0 chr11 29400878 29400918 -119382554 + AT_rich Low_complexity Low_complexity 1 40 0 1081 230 73 14 chr11 29401538 29401895 -119381577 - L1ME2 LINE L1 -19 6145 5768 2161 217 42 6 chr11 29401964 29402467 -119381005 - L1MB7 LINE L1 -20 6164 5644 186 133 0 0 chr11 29402468 29402498 -119380974 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 1881 259 137 7 chr11 29402572 29403302 -119380170 - L1M4c LINE L1 -4591 1793 969 703 211 77 5 chr11 29403395 29403589 -119379883 + L1MC3 LINE L1 7560 7767 -18 300 336 18 0 chr11 29403656 29403769 -119379703 + MIR3 SINE MIR 87 201 -7 545 261 92 19 chr11 29404017 29404224 -119379248 - MIR SINE MIR -4 258 37 21 36 0 0 chr11 29404264 29404292 -119379180 + AT_rich Low_complexity Low_complexity 1 28 0 4645 31 0 0 chr11 29404655 29405208 -119378264 - L1PA4 LINE L1 0 6155 5603 2404 80 0 0 chr11 29405222 29405533 -119377939 + AluY SINE Alu 1 311 0 474 301 132 25 chr11 29407019 29407414 -119376058 + L1MEc LINE L1 2892 3328 -2887 563 313 112 70 chr11 29407468 29407941 -119375531 - L2 LINE L2 -819 2495 2003 449 208 0 104 chr11 29407977 29408121 -119375351 + L2 LINE L2 1916 2044 -1270 399 299 87 68 chr11 29408361 29408996 -119374476 + L1MEc LINE L1 3861 4507 -1708 24 96 0 0 chr11 29408997 29409070 -119374402 + AT_rich Low_complexity Low_complexity 1 73 0 200 143 65 26 chr11 29409100 29409177 -119374295 + (TA)n Simple_repeat Simple_repeat 1 80 0 318 250 243 7 chr11 29409229 29409306 -119374166 + L1M4b LINE L1 2 60 -6799 183 42 0 0 chr11 29409306 29409330 -119374142 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 318 250 243 7 chr11 29409330 29409404 -119374068 + L1M4b LINE L1 60 189 -6670 * 2579 269 49 27 chr11 29409398 29410723 -119372749 + L1M4b LINE L1 742 2104 -4847 1317 164 152 8 chr11 29412028 29412329 -119371143 - AluJb SINE Alu 0 340 2 583 284 59 22 chr11 29412479 29412800 -119370672 - L1MC4 LINE L1 -547 7495 7163 491 323 108 64 chr11 29412991 29413867 -119369605 - L1 LINE L1 -2945 3201 2287 303 28 0 0 chr11 29413956 29413992 -119369480 + (TG)n Simple_repeat Simple_repeat 2 37 0 252 0 0 0 chr11 29413991 29414019 -119369453 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 34 89 0 0 chr11 29414408 29414498 -119368974 + AT_rich Low_complexity Low_complexity 1 90 0 559 347 29 67 chr11 29414498 29415114 -119368358 - HAL1b LINE L1 -707 641 49 439 367 162 18 chr11 29415720 29416174 -119367298 - L2 LINE L2 -243 3070 2550 310 301 176 0 chr11 29416178 29416314 -119367158 - L2 LINE L2 -929 2385 2226 273 292 29 3 chr11 29416986 29417146 -119366326 + MIR SINE MIR 2 208 -54 22 0 0 0 chr11 29417282 29417304 -119366168 + AT_rich Low_complexity Low_complexity 1 22 0 754 257 0 33 chr11 29417606 29417789 -119365683 - MER5B DNA MER1_type 0 178 2 21 82 0 0 chr11 29417850 29417899 -119365573 + AT_rich Low_complexity Low_complexity 1 49 0 236 323 31 0 chr11 29417935 29418031 -119365441 - L1ME4a LINE L1 -79 6042 5944 40 21 0 0 chr11 29418508 29418555 -119364917 + AT_rich Low_complexity Low_complexity 1 47 0 2414 60 0 3 chr11 29418884 29419183 -119364289 - AluY SINE Alu -13 298 1 333 0 0 0 chr11 29421604 29421641 -119361831 + (CA)n Simple_repeat Simple_repeat 2 38 0 3170 81 37 0 chr11 29421733 29422168 -119361304 - MLT2A2 LTR ERVL 0 453 3 2356 84 18 60 chr11 29423646 29423846 -119359626 - THE1B LTR MaLR 0 364 186 2114 129 0 0 chr11 29423846 29424148 -119359324 - AluSx SINE Alu -10 302 1 2356 84 18 60 chr11 29424148 29424327 -119359145 - THE1B LTR MaLR -178 186 1 54 56 0 0 chr11 29424602 29424691 -119358781 + AT_rich Low_complexity Low_complexity 1 89 0 462 333 70 5 chr11 29424765 29424978 -119358494 - MIR SINE MIR 0 262 36 345 47 0 0 chr11 29425039 29425082 -119358390 + (TG)n Simple_repeat Simple_repeat 1 43 0 303 250 55 47 chr11 29425174 29425302 -119358170 + L1MC4 LINE L1 6575 6703 -1339 327 277 26 19 chr11 29425314 29425469 -119358003 + (TA)n Simple_repeat Simple_repeat 1 156 0 231 36 0 0 chr11 29426322 29426350 -119357122 + (TG)n Simple_repeat Simple_repeat 1 28 0 278 213 0 13 chr11 29426457 29426532 -119356940 + (CATA)n Simple_repeat Simple_repeat 3 76 0 354 315 27 7 chr11 29427696 29427845 -119355627 - MIR SINE MIR -10 252 101 210 71 0 0 chr11 29429575 29429603 -119353869 + (CA)n Simple_repeat Simple_repeat 2 29 0 229 163 41 0 chr11 29429603 29429652 -119353820 + L1MC4 LINE L1 6658 6708 -1334 190 288 14 41 chr11 29429925 29429998 -119353474 - L2 LINE L2 0 3313 3243 214 301 24 24 chr11 29430084 29430167 -119353305 + MIR SINE MIR 44 126 -136 1257 234 58 58 chr11 29430204 29430407 -119353065 + MLT1C LTR MaLR 5 207 -260 1881 123 4 7 chr11 29430407 29430683 -119352789 + AluSx SINE Alu 1 275 -37 1257 234 58 58 chr11 29430683 29430941 -119352531 + MLT1C LTR MaLR 206 466 -1 209 143 20 20 chr11 29431254 29431303 -119352169 + GA-rich Low_complexity Low_complexity 2 50 0 577 239 8 0 chr11 29432923 29433040 -119350432 - FLAM_A SINE Alu -11 122 5 222 206 151 27 chr11 29433107 29433180 -119350292 - L2 LINE L2 0 3313 3232 243 311 0 0 chr11 29433841 29433915 -119349557 - MER63 DNA MER1_type -362 700 1 374 364 68 22 chr11 29434769 29435184 -119348288 + L1ME LINE L1 34 467 -5929 546 235 51 99 chr11 29435554 29436110 -119347362 + L1ME LINE L1 667 1223 -4982 477 287 67 46 chr11 29436138 29436466 -119347006 + L1ME LINE L1 1240 1574 -4641 371 318 94 75 chr11 29436483 29436908 -119346564 + L1ME LINE L1 5386 5818 -372 1197 207 102 18 chr11 29437005 29437280 -119346192 + AluJb SINE Alu 3 300 -2 1408 199 17 30 chr11 29437603 29437904 -119345568 + AluJo SINE Alu 1 297 -15 21 71 0 0 chr11 29438552 29438594 -119344878 + AT_rich Low_complexity Low_complexity 1 42 0 561 300 60 15 chr11 29439476 29439676 -119343796 - MLT1I LTR MaLR -3 406 198 740 241 10 31 chr11 29439713 29439908 -119343564 + L1PB4 LINE L1 5966 6156 0 1803 194 13 76 chr11 29440161 29440635 -119342837 - L1MA10 LINE L1 0 6334 5891 236 280 65 0 chr11 29440635 29440728 -119342744 - MLT1I LTR MaLR -220 170 72 635 187 8 15 chr11 29440733 29440867 -119342605 - MLT1B LTR MaLR -247 143 11 2143 108 0 13 chr11 29441098 29441403 -119342069 - AluSg SINE Alu -1 309 9 462 145 103 62 chr11 29442042 29442187 -119341285 - L1MA9 LINE L1 -1 6311 6161 4933 176 24 25 chr11 29442195 29443853 -119339619 - L1MA7 LINE L1 0 6291 4645 1452 228 46 52 chr11 29443938 29444456 -119339016 + Charlie1b DNA MER1_type 1 515 -8 2703 111 13 0 chr11 29444501 29444889 -119338583 + L1PA10 LINE L1 5776 6168 0 33 25 0 0 chr11 29444934 29444974 -119338498 + AT_rich Low_complexity Low_complexity 1 40 0 4524 200 37 18 chr11 29445053 29446074 -119337398 - L1MC3 LINE L1 -1306 6479 5439 22 0 0 0 chr11 29446821 29446843 -119336629 + AT_rich Low_complexity Low_complexity 1 22 0 254 333 0 0 chr11 29447170 29447275 -119336197 + L1P LINE L1 3713 3817 -2329 215 242 16 32 chr11 29447516 29447578 -119335894 + MIR SINE MIR 80 140 -122 296 303 81 46 chr11 29447972 29448326 -119335146 + L1 LINE L1 3670 4055 -2091 1922 143 0 19 chr11 29448326 29448634 -119334838 + AluSg1 SINE Alu 1 302 -7 296 303 81 46 chr11 29448634 29448883 -119334589 + L1 LINE L1 4055 4294 -1852 508 264 7 0 chr11 29449961 29450105 -119333367 - MER69 DNA AcHobo 0 2526 2382 319 179 18 0 chr11 29450257 29450313 -119333159 - MER69 DNA AcHobo -2469 57 1 509 258 84 24 chr11 29450467 29450634 -119332838 - MER5B DNA MER1_type -1 177 1 254 314 17 25 chr11 29452005 29452123 -119331349 - L2 LINE L2 -5 3308 3192 * 1862 265 89 33 chr11 29452116 29452787 -119330685 - L2 LINE L2 -522 2792 2084 228 254 0 0 chr11 29453021 29453076 -119330396 + CT-rich Low_complexity Low_complexity 1 55 0 372 189 0 0 chr11 29453076 29453150 -119330322 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 278 177 0 62 chr11 29453150 29453246 -119330226 + L1MC4 LINE L1 6614 6703 -1339 235 114 0 23 chr11 29453259 29453303 -119330169 + L1MCa LINE L1 2006 2048 -4378 379 333 108 7 chr11 29454151 29454357 -119329115 - MIR SINE MIR -14 248 20 230 331 116 8 chr11 29455155 29455276 -119328196 - L2 LINE L2 -2 3270 3137 2621 111 3 8 chr11 29455550 29455927 -119327545 - THE1C LTR MaLR 0 375 1 254 315 11 22 chr11 29455937 29456026 -119327446 + MER5A DNA MER1_type 102 189 0 234 0 0 0 chr11 29456498 29456524 -119326948 + (CA)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr11 29456523 29456543 -119326929 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 1371 256 76 10 chr11 29456670 29457077 -119326395 + MLT1C LTR MaLR 34 467 0 296 250 35 62 chr11 29457883 29458027 -119325445 + MER103 DNA DNA 6 145 -21 302 266 6 154 chr11 29458235 29458404 -119325068 + LTR67 LTR ERVL 149 292 -265 348 311 78 53 chr11 29459278 29459484 -119323988 - MLT1K LTR MaLR -6 582 372 2126 148 120 5 chr11 29459870 29460254 -119323218 + MSTA LTR MaLR 1 428 0 405 250 0 0 chr11 29461133 29461221 -119322251 - MLT1B LTR MaLR -2 388 301 421 172 36 25 chr11 29461282 29461434 -119322038 - MLT1B LTR MaLR -186 188 1 215 293 189 19 chr11 29462277 29462383 -119321089 - L2 LINE L2 -15 3257 3134 370 250 56 74 chr11 29462633 29462849 -119320623 - L1ME4a LINE L1 -121 6000 5789 1020 200 136 10 chr11 29462902 29463217 -119320255 - MSTA LTR MaLR 0 364 14 221 246 0 35 chr11 29463246 29463303 -119320169 - MIR SINE MIR -91 117 63 602 273 20 0 chr11 29463572 29463722 -119319750 + MIR SINE MIR 45 197 -65 1571 220 152 125 chr11 29463723 29464356 -119319116 - MLT1E2 LTR MaLR 0 626 5 221 0 0 33 chr11 29465623 29465653 -119317819 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1967 128 28 42 chr11 29465837 29466197 -119317275 - THE1A LTR MaLR 0 355 1 10694 106 35 4 chr11 29466197 29467730 -119315742 - THE1A-int LTR MaLR 0 1580 1 1964 145 11 41 chr11 29467730 29468096 -119315376 - THE1A LTR MaLR 0 355 1 2350 208 48 7 chr11 29468453 29469181 -119314291 + L1PA16 LINE L1 4780 5527 -638 2066 173 64 5 chr11 29469181 29469574 -119313898 + MSTA LTR MaLR 1 416 -12 8268 182 66 4 chr11 29469586 29471045 -119312427 + MSTA-int LTR MaLR 1 1564 -87 1223 7 0 0 chr11 29471045 29471185 -119312287 - L1PA2 LINE L1 0 6155 6016 8268 182 66 4 chr11 29471185 29471279 -119312193 + MSTA-int LTR MaLR 1564 1651 0 2059 174 60 39 chr11 29471279 29471396 -119312076 + MSTB LTR MaLR 1 114 -312 2736 81 8 6 chr11 29471396 29471756 -119311716 - THE1B LTR MaLR -3 361 1 2059 174 60 39 chr11 29471756 29472051 -119311421 + MSTB LTR MaLR 114 422 -4 3862 144 22 0 chr11 29472054 29472677 -119310795 + L1PA16 LINE L1 5521 6157 -9 198 0 0 0 chr11 29472687 29472709 -119310763 + (CATA)n Simple_repeat Simple_repeat 2 23 0 1050 256 47 91 chr11 29472775 29473135 -119310337 + MLT1E2 LTR MaLR 51 425 -168 297 0 0 0 chr11 29473135 29473168 -119310304 + (TG)n Simple_repeat Simple_repeat 2 34 0 1050 256 47 91 chr11 29473168 29473192 -119310280 + MLT1E2 LTR MaLR 425 449 -144 1587 184 3 28 chr11 29473192 29473474 -119309998 - AluJo SINE Alu -35 277 3 1050 256 47 91 chr11 29473474 29473693 -119309779 + MLT1E2 LTR MaLR 449 593 0 37 23 0 0 chr11 29474340 29474384 -119309088 + AT_rich Low_complexity Low_complexity 1 44 0 2281 167 59 101 chr11 29474384 29474841 -119308631 - L1MC2 LINE L1 -9 6335 5879 685 293 4 36 chr11 29474841 29475121 -119308351 - L1MB8 LINE L1 -273 5905 5635 234 276 0 0 chr11 29475713 29475771 -119307701 + MER103 DNA DNA 109 166 0 1862 197 69 17 chr11 29475989 29476396 -119307076 - MSTA LTR MaLR 0 428 1 301 200 0 0 chr11 29476416 29476476 -119306996 + MER103 DNA DNA 35 94 -72 1814 218 64 23 chr11 29477510 29477991 -119305481 + MLT1D LTR MaLR 1 501 -4 270 300 68 72 chr11 29478016 29478253 -119305219 + MIR SINE MIR 26 261 -1 369 302 137 41 chr11 29478539 29478951 -119304521 - L2 LINE L2 -114 3199 2740 1958 160 92 15 chr11 29478951 29479005 -119304467 - MSTB1 LTR MaLR 0 432 384 555 90 0 0 chr11 29479005 29479083 -119304389 - MADE1 DNA Mariner 0 80 3 1958 160 92 15 chr11 29479083 29479428 -119304044 - MSTB1 LTR MaLR -48 384 2 884 305 53 51 chr11 29479428 29479460 -119304012 - L2 LINE L2 -569 2745 2715 2477 51 6 16 chr11 29479460 29479773 -119303699 - AluY SINE Alu -1 310 1 884 305 53 51 chr11 29479773 29480251 -119303221 - L2 LINE L2 -599 2715 2234 310 215 54 65 chr11 29480555 29480648 -119302824 - MIR3 SINE MIR -54 154 63 2964 145 41 19 chr11 29480954 29481470 -119302002 - MER1A DNA MER1_type 0 527 1 348 264 57 93 chr11 29481520 29481660 -119301812 + MIR SINE MIR 11 145 -63 2318 73 3 7 chr11 29481743 29482031 -119301441 + AluSp SINE Alu 1 287 -26 2676 214 6 4 chr11 29482044 29482564 -119300908 - MER74A LTR ERVL -8 550 30 286 333 17 8 chr11 29483070 29483187 -119300285 - MIR SINE MIR -23 239 122 693 242 12 19 chr11 29483203 29483393 -119300079 - MLT1H LTR MaLR -307 242 14 326 294 98 33 chr11 29483589 29483773 -119299699 - MIR SINE MIR -54 208 13 243 311 25 17 chr11 29484000 29484119 -119299353 + GA-rich Low_complexity Low_complexity 3 122 0 6900 41 7 0 chr11 29484210 29485064 -119298408 + L1PA4 LINE L1 5296 6155 0 348 313 67 34 chr11 29486407 29486586 -119296886 - L2 LINE L2 0 3313 3129 717 267 99 56 chr11 29486647 29487056 -119296416 + LTR33A LTR ERVL 99 511 -12 3157 292 111 16 chr11 29487084 29488444 -119295028 - L2 LINE L2 -229 3084 1604 1226 162 154 22 chr11 29488452 29488484 -119294988 - L1PB4 LINE L1 -2 6154 6128 2431 147 60 0 chr11 29488484 29488886 -119294586 + MSTB LTR MaLR 1 426 0 1226 162 154 22 chr11 29488886 29489125 -119294347 - L1PB4 LINE L1 -28 6128 5847 1573 318 96 11 chr11 29489128 29489158 -119294314 - L2 LINE L2 -1695 1619 1593 1941 180 12 3 chr11 29489158 29489503 -119293969 - MER7A DNA MER2_type 0 346 1 1573 318 96 11 chr11 29489503 29490089 -119293383 - L2 LINE L2 -1721 1593 951 23121 35 17 1 chr11 29491760 29497197 -119286275 - L1PA3 LINE L1 -5 6150 580 769 52 0 0 chr11 29497166 29497263 -119286209 - L1PA3 LINE L1 -6048 98 2 * 22 35 0 0 chr11 29497410 29497439 -119286033 + AT_rich Low_complexity Low_complexity 1 29 0 4154 68 0 2 chr11 29497483 29498015 -119285457 + L1PA7 LINE L1 5563 6093 -61 297 128 0 0 chr11 29498022 29498069 -119285403 + (TA)n Simple_repeat Simple_repeat 2 48 0 716 302 76 44 chr11 29498071 29498478 -119284994 + L1ME1 LINE L1 77 496 -5900 647 189 0 0 chr11 29498483 29498589 -119284883 - Tigger3(Golem) DNA MER2_type -5 3024 2919 1674 276 92 49 chr11 29498744 29499485 -119283987 + L1ME1 LINE L1 850 1557 -4839 1780 126 79 7 chr11 29499485 29499762 -119283710 + AluSg SINE Alu 1 297 -13 1674 276 92 49 chr11 29499762 29500405 -119283067 + L1ME1 LINE L1 1557 2294 -4102 1722 171 23 11 chr11 29500421 29500772 -119282700 + L1MC2 LINE L1 5703 6057 -287 1477 156 53 47 chr11 29500774 29501113 -119282359 + MER4A LTR ERV1 1 341 -323 557 142 198 68 chr11 29501123 29501372 -119282100 + MER4C LTR ERV1 157 445 -20 1353 145 45 22 chr11 29501392 29501661 -119281811 + L1MC2 LINE L1 6066 6340 -4 1878 99 7 7 chr11 29501705 29501977 -119281495 + AluSc SINE Alu 37 308 -1 2287 260 34 26 chr11 29502026 29502067 -119281405 + L1ME1 LINE L1 2334 2373 -3842 252 86 0 0 chr11 29502067 29502102 -119281370 + (CA)n Simple_repeat Simple_repeat 2 36 0 2287 260 34 26 chr11 29502102 29502941 -119280531 + L1ME1 LINE L1 2373 3221 -2994 2879 230 83 41 chr11 29503081 29504058 -119279414 + L1MD2 LINE L1 5338 6355 -4 304 283 42 30 chr11 29504055 29504221 -119279251 + L1ME1 LINE L1 3401 3568 -2647 * 2626 251 79 14 chr11 29504226 29505204 -119278268 + L1ME1 LINE L1 3857 4897 -1318 353 239 28 9 chr11 29505258 29505367 -119278105 - L1MA10 LINE L1 0 6334 6224 302 0 26 0 chr11 29505371 29505409 -119278063 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1951 242 36 62 chr11 29505424 29506198 -119277274 + L1ME1 LINE L1 5477 6230 -5 186 246 0 66 chr11 29507081 29507142 -119276330 + L2 LINE L2 3141 3197 -75 241 356 0 0 chr11 29507677 29507767 -119275705 + MIR SINE MIR 101 190 -72 638 276 133 55 chr11 29507793 29508177 -119275295 + MLT1J1 LTR MaLR 33 446 0 187 343 0 29 chr11 29508738 29508808 -119274664 - MIR SINE MIR -118 90 23 342 243 29 0 chr11 29509847 29509987 -119273485 + (TA)n Simple_repeat Simple_repeat 2 145 0 22 88 0 0 chr11 29510036 29510093 -119273379 + AT_rich Low_complexity Low_complexity 1 57 0 260 75 75 0 chr11 29510107 29510160 -119273312 + LTR66 LTR ERVL 394 450 -160 301 381 44 11 chr11 29510847 29511028 -119272444 + L2 LINE L2 2857 3043 -229 1270 195 49 21 chr11 29511139 29511571 -119271901 - L1M4 LINE L1 -619 5555 5104 270 206 0 32 chr11 29511578 29511641 -119271831 - L1M4 LINE L1 -1276 4870 4810 19611 39 3 0 chr11 29511659 29514851 -119268621 - L1PA4 LINE L1 -3 6152 2954 898 108 89 32 chr11 29514851 29515009 -119268463 + Tigger3(Golem) DNA MER2_type 2782 2948 -81 278 139 0 0 chr11 29515035 29515078 -119268394 + Tigger3(Golem) DNA MER2_type 2880 2922 -107 303 189 24 52 chr11 29515115 29515240 -119268232 + Tigger3(Golem) DNA MER2_type 2854 2951 -78 247 185 93 0 chr11 29515240 29515294 -119268178 + Tigger3(Golem) DNA MER2_type 2887 2945 -84 391 94 71 82 chr11 29515309 29515394 -119268078 + Tigger3(Golem) DNA MER2_type 2868 2951 -78 312 171 0 92 chr11 29515391 29515467 -119268005 + Tigger3(Golem) DNA MER2_type 2868 2936 -93 * 345 164 0 81 chr11 29515469 29515607 -119267865 + Tigger3(Golem) DNA MER2_type 2868 2954 -75 301 152 25 89 chr11 29515600 29515679 -119267793 + Tigger3(Golem) DNA MER2_type 2877 2950 -79 * 318 200 0 31 chr11 29515661 29515726 -119267746 + Tigger3(Golem) DNA MER2_type 2878 2940 -89 * 350 111 0 97 chr11 29515721 29515793 -119267679 + Tigger3(Golem) DNA MER2_type 2869 2933 -96 367 97 0 97 chr11 29515811 29515883 -119267589 + Tigger3(Golem) DNA MER2_type 2878 2942 -87 292 160 0 0 chr11 29515886 29515936 -119267536 + Tigger3(Golem) DNA MER2_type 2881 2930 -99 * 824 200 19 12 chr11 29515931 29516091 -119267381 + Tigger3(Golem) DNA MER2_type 2869 3029 0 388 302 195 54 chr11 29516091 29516614 -119266858 - L2 LINE L2 -22 3291 2681 278 262 24 0 chr11 29518559 29518643 -119264829 + GA-rich Low_complexity Low_complexity 1 86 0 1204 197 119 44 chr11 29518983 29519344 -119264128 + MER89 LTR ERV1 172 559 0 1477 109 19 0 chr11 29519910 29520121 -119263351 - L1PA10 LINE L1 -16 6152 5938 1257 165 5 31 chr11 29520445 29520669 -119262803 + MLT1A1 LTR MaLR 1 218 -147 254 234 171 27 chr11 29521928 29522039 -119261433 - MIR SINE MIR -10 252 126 290 25 0 25 chr11 29522904 29522944 -119260528 + (TC)n Simple_repeat Simple_repeat 2 40 0 470 245 187 26 chr11 29524150 29524305 -119259167 - MER5A DNA MER1_type 0 189 10 427 296 60 40 chr11 29524553 29524752 -119258720 - MIR SINE MIR -40 222 20 182 286 36 98 chr11 29524712 29524824 -119258648 + MIR SINE MIR 41 145 -63 * 319 292 71 30 chr11 29524844 29525012 -119258460 + MER5B DNA MER1_type 1 175 -3 1977 162 0 0 chr11 29526313 29526610 -119256862 - AluJb SINE Alu -14 298 2 2385 162 36 2 chr11 29527437 29527851 -119255621 + MSTA LTR MaLR 1 428 0 9466 164 27 9 chr11 29527851 29529458 -119254014 + MSTA-int LTR MaLR 1 1636 -15 1348 172 31 12 chr11 29529490 29529746 -119253726 + MSTA LTR MaLR 3 263 -165 580 180 27 0 chr11 29529746 29529857 -119253615 - L1M3f LINE L1 -4684 644 531 1086 179 0 0 chr11 29529859 29530038 -119253434 + MSTA LTR MaLR 250 428 0 653 312 41 19 chr11 29530099 29530368 -119253104 + LTR33 LTR ERVL 10 284 -237 3586 172 10 67 chr11 29530841 29531544 -119251928 - L1M3f LINE L1 -4660 668 6 1735 183 71 45 chr11 29531710 29532132 -119251340 + Tigger2a DNA MER2_type 1 433 -1 2976 63 5 0 chr11 29532145 29532526 -119250946 + L1PA7 LINE L1 5772 6154 0 315 71 0 0 chr11 29534076 29534118 -119249354 + (TG)n Simple_repeat Simple_repeat 2 43 0 50 31 0 0 chr11 29534310 29534374 -119249098 + AT_rich Low_complexity Low_complexity 1 64 0 2396 73 0 0 chr11 29536461 29536780 -119246692 + AluY SINE Alu 1 311 0 539 291 141 60 chr11 29537127 29537673 -119245799 - MLT1E LTR MaLR -3 590 1 183 162 0 0 chr11 29537694 29537731 -119245741 + A-rich Low_complexity Low_complexity 1 37 0 214 203 0 85 chr11 29538117 29538176 -119245296 + MIR SINE MIR 208 261 -1 2107 91 7 45 chr11 29539398 29539706 -119243766 - AluSq SINE Alu -13 300 5 298 268 37 12 chr11 29540370 29540452 -119243020 + MIR3 SINE MIR 4 87 -121 28 61 0 0 chr11 29541872 29541921 -119241551 + AT_rich Low_complexity Low_complexity 1 49 0 38 39 0 39 chr11 29541942 29542020 -119241452 + AT_rich Low_complexity Low_complexity 1 75 0 240 202 146 11 chr11 29542715 29542804 -119240668 - HAL1 LINE L1 -856 1651 1551 1515 227 79 36 chr11 29542814 29543399 -119240073 - HAL1 LINE L1 -1046 1461 852 260 159 204 23 chr11 29543483 29543571 -119239901 + L1ME LINE L1 5385 5488 -682 1526 241 65 45 chr11 29543628 29544212 -119239260 + L1ME2 LINE L1 5442 6037 -127 359 61 20 0 chr11 29544466 29544515 -119238957 - MADE1 DNA Mariner -25 55 6 22 0 0 0 chr11 29544652 29544674 -119238798 + AT_rich Low_complexity Low_complexity 1 22 0 190 326 51 58 chr11 29545504 29545642 -119237830 - MIR SINE MIR -74 188 52 1539 229 22 14 chr11 29548955 29549317 -119234155 + MLT1A1 LTR MaLR 1 365 0 5138 152 10 24 chr11 29549325 29549978 -119233494 + L1MB1 LINE L1 5018 5647 -521 2218 110 0 7 chr11 29549978 29550277 -119233195 + AluSc SINE Alu 1 297 -12 5138 152 10 24 chr11 29550277 29550787 -119232685 + L1MB1 LINE L1 5647 6162 -6 2449 87 0 0 chr11 29551057 29551368 -119232104 - AluY SINE Alu 0 311 1 27 29 0 0 chr11 29551589 29551623 -119231849 + AT_rich Low_complexity Low_complexity 1 34 0 354 304 109 70 chr11 29551747 29552060 -119231412 - L1MEd LINE L1 -2470 3659 3335 183 100 0 0 chr11 29552088 29552118 -119231354 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1640 141 28 94 chr11 29552827 29553188 -119230284 - MER1B DNA MER1_type 0 337 1 263 258 0 0 chr11 29553244 29553310 -119230162 + MER116 DNA Mariner 1 66 -14 514 282 18 0 chr11 29553427 29553597 -119229875 + L1ME3A LINE L1 5776 5948 -222 21 0 0 0 chr11 29553746 29553767 -119229705 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 29553879 29553911 -119229561 + AT_rich Low_complexity Low_complexity 1 32 0 302 281 102 59 chr11 29554182 29554491 -119228981 - L1MEd LINE L1 -2751 3378 3084 1982 125 40 0 chr11 29554491 29554787 -119228685 - AluSg SINE Alu -2 308 1 302 281 102 59 chr11 29554787 29554900 -119228572 - L1MEd LINE L1 -3045 3084 2977 279 0 0 0 chr11 29554900 29554931 -119228541 + (TA)n Simple_repeat Simple_repeat 2 32 0 302 281 102 59 chr11 29554931 29555539 -119227933 - L1MEd LINE L1 -3152 2977 2303 23 0 0 0 chr11 29555543 29555566 -119227906 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 29556203 29556232 -119227240 + AT_rich Low_complexity Low_complexity 1 29 0 260 300 104 24 chr11 29556271 29556521 -119226951 - HAL1 LINE L1 -862 1645 1376 253 330 46 31 chr11 29556568 29556829 -119226643 - L1MEd LINE L1 -4897 1222 958 233 268 113 0 chr11 29557049 29557120 -119226352 - HAL1 LINE L1 -749 1758 1680 652 332 69 24 chr11 29557130 29557591 -119225881 - HAL1 LINE L1 -1222 1285 804 186 133 0 0 chr11 29558391 29558421 -119225051 + (TG)n Simple_repeat Simple_repeat 2 31 0 249 281 79 22 chr11 29558536 29558675 -119224797 - L1ME LINE L1 -592 5570 5424 21 0 0 0 chr11 29558801 29558822 -119224650 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr11 29558863 29558906 -119224566 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 29559396 29559417 -119224055 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 29560207 29560229 -119223243 + AT_rich Low_complexity Low_complexity 1 22 0 281 236 62 120 chr11 29560239 29560447 -119223025 - MIR SINE MIR -10 252 57 327 295 121 30 chr11 29561509 29561675 -119221797 + MIR SINE MIR 10 190 -72 1501 104 45 0 chr11 29562137 29562357 -119221115 + MER30 DNA MER1_type 1 230 0 194 302 111 16 chr11 29562532 29562595 -119220877 + MIR SINE MIR 32 100 -108 23 0 0 0 chr11 29562689 29562712 -119220760 + AT_rich Low_complexity Low_complexity 1 23 0 766 297 24 0 chr11 29562733 29562942 -119220530 - MIR SINE MIR -41 221 8 23 0 0 0 chr11 29563465 29563488 -119219984 + AT_rich Low_complexity Low_complexity 1 23 0 682 183 8 0 chr11 29563504 29563624 -119219848 - FLAM_C SINE Alu -20 123 3 430 293 20 13 chr11 29563752 29563902 -119219570 + MIR SINE MIR 106 256 -6 306 0 0 0 chr11 29564216 29564250 -119219222 + (CA)n Simple_repeat Simple_repeat 1 34 0 1645 251 15 23 chr11 29564998 29565469 -119218003 - MLT1C LTR MaLR 0 467 1 181 397 0 0 chr11 29566194 29566257 -119217215 - MIR SINE MIR -55 153 91 309 287 47 16 chr11 29566756 29566885 -119216587 + L2 LINE L2 3123 3255 -58 215 290 145 30 chr11 29567509 29567640 -119215832 + MIR SINE MIR 1 146 -116 26 50 0 0 chr11 29569482 29569522 -119213950 + AT_rich Low_complexity Low_complexity 1 40 0 324 351 53 0 chr11 29570077 29570228 -119213244 - MIR SINE MIR -65 197 39 28 0 0 0 chr11 29570412 29570440 -119213032 + AT_rich Low_complexity Low_complexity 1 28 0 199 289 0 0 chr11 29570877 29570922 -119212550 - L3 LINE CR1 -19 1558 1514 389 293 58 67 chr11 29570935 29571216 -119212256 - L1ME4a LINE L1 -13 6108 5833 1534 203 10 17 chr11 29571216 29571506 -119211966 + AluJo SINE Alu 1 288 -24 389 293 58 67 chr11 29571506 29571746 -119211726 - L1ME4a LINE L1 -288 5833 5592 1100 175 87 159 chr11 29571840 29572474 -119210998 - LTR4 LTR ERV1 0 588 1 8856 171 49 32 chr11 29572475 29574217 -119209255 - HERV3 LTR ERV1 0 8426 6656 38404 162 33 21 chr11 29574217 29580677 -119202795 - HERV3 LTR ERV1 -1871 6555 19 1159 179 88 148 chr11 29580700 29581322 -119202150 - LTR4 LTR ERV1 -3 585 1 847 279 27 0 chr11 29581798 29582017 -119201455 + MER115 DNA AcHobo 462 686 -7 354 266 71 71 chr11 29582240 29582492 -119200980 + L1MC4a LINE L1 3914 4165 -1981 370 279 106 56 chr11 29582878 29583376 -119200096 + L1MC4a LINE L1 4738 5260 -886 201 244 15 7 chr11 29583541 29583676 -119199796 + (TA)n Simple_repeat Simple_repeat 2 137 0 2715 260 123 41 chr11 29583774 29585102 -119198370 + L1MC4a LINE L1 5269 6705 -1103 2358 235 117 29 chr11 29585140 29586001 -119197471 + L1MC4 LINE L1 7106 8042 0 21 71 0 0 chr11 29586812 29586854 -119196618 + AT_rich Low_complexity Low_complexity 1 42 0 2575 172 70 78 chr11 29587383 29588079 -119195393 + LTR8 LTR ERV1 1 691 0 2045 125 0 0 chr11 29589325 29589613 -119193859 - AluSq SINE Alu -10 303 16 233 154 39 0 chr11 29589737 29589789 -119193683 + GA-rich Low_complexity Low_complexity 2 55 0 329 291 169 0 chr11 29590789 29590937 -119192535 + MIR SINE MIR 51 223 -39 21 0 0 0 chr11 29591346 29591367 -119192105 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr11 29591977 29592008 -119191464 + AT_rich Low_complexity Low_complexity 1 31 0 1292 300 124 20 chr11 29592857 29593404 -119190068 - MLT2F LTR ERVL -1 662 59 1014 314 89 28 chr11 29593743 29594180 -119189292 - LTR33 LTR ERVL -55 466 3 591 15 0 0 chr11 29595194 29595262 -119188210 + (TA)n Simple_repeat Simple_repeat 1 68 0 2129 112 30 0 chr11 29595467 29595762 -119187710 + AluSq SINE Alu 1 304 -9 443 167 11 0 chr11 29596710 29596800 -119186672 + CT-rich Low_complexity Low_complexity 2 92 0 234 250 132 0 chr11 29596772 29596840 -119186632 - AluS SINE Alu -1 299 223 * 335 167 15 0 chr11 29596893 29596959 -119186513 + LTR30 LTR ERV1 552 618 -104 935 115 0 0 chr11 29596987 29597109 -119186363 - FLAM_C SINE Alu -20 123 2 354 253 78 39 chr11 29597146 29597300 -119186172 - MLT1J2 LTR MaLR -290 160 1 13849 43 1 2 chr11 29597502 29599318 -119184154 + L1PA4 LINE L1 1188 3001 -3145 1554 40 0 0 chr11 29599316 29599515 -119183957 + L1P LINE L1 4551 4749 -1397 * 19434 35 0 1 chr11 29599515 29602663 -119180809 + L1PA4 LINE L1 3006 6153 -2 375 333 0 0 chr11 29602827 29602929 -119180543 + MIR SINE MIR 38 139 -69 918 222 43 30 chr11 29602972 29603202 -119180270 - MIR SINE MIR -15 247 15 241 253 36 12 chr11 29603212 29603295 -119180177 - MLT1L LTR MaLR -2 613 529 273 261 170 18 chr11 29653953 29654118 -119129354 - L2 LINE L2 -19 3294 3105 268 385 81 0 chr11 29654213 29654361 -119129111 + L2 LINE L2 3100 3259 -13 967 113 0 0 chr11 29654565 29654689 -119128783 - AluY SINE Alu -187 124 1 424 233 9 60 chr11 29654894 29655010 -119128462 + MER81 DNA DNA 3 112 -2 407 279 88 19 chr11 29655876 29656091 -119127381 - L1ME4a LINE L1 -266 5855 5626 1045 270 81 48 chr11 29657091 29657295 -119126177 - MLT1H1 LTR MaLR -84 471 275 2406 118 22 3 chr11 29657295 29657652 -119125820 + THE1B LTR MaLR 1 364 0 1045 270 81 48 chr11 29657652 29657903 -119125569 - MLT1H1 LTR MaLR -280 275 1 278 348 19 62 chr11 29658094 29658255 -119125217 + MIR SINE MIR 34 147 -61 688 219 118 92 chr11 29658363 29658678 -119124794 - MER46C DNA MER2_type -15 323 1 392 314 66 7 chr11 29658873 29659010 -119124462 + MIR SINE MIR 108 252 -10 234 176 0 0 chr11 29659015 29659066 -119124406 + CT-rich Low_complexity Low_complexity 1 51 0 240 238 111 40 chr11 29659277 29659403 -119124069 - L2 LINE L2 -189 3083 2949 2131 107 0 7 chr11 29659817 29660115 -119123357 - AluSq SINE Alu -17 296 1 960 137 17 57 chr11 29660903 29661078 -119122394 + Tigger2a DNA MER2_type 4 171 -263 2037 171 72 0 chr11 29661087 29661474 -119121998 - Tigger2 DNA MER2_type -1 2717 2303 1695 89 69 82 chr11 29661497 29661800 -119121672 - AluY SINE Alu -10 301 3 820 231 5 41 chr11 29661832 29662027 -119121445 + AluJo SINE Alu 1 188 -124 374 315 0 28 chr11 29662145 29662326 -119121146 + G-rich Low_complexity Low_complexity 3 178 0 371 286 6 45 chr11 29662341 29662519 -119120953 + G-rich Low_complexity Low_complexity 1 171 0 5260 161 21 10 chr11 29662569 29662668 -119120804 - L1P4 LINE L1 -467 5694 5598 1791 149 14 3 chr11 29662668 29662956 -119120516 - AluSx SINE Alu -18 294 4 5260 161 21 10 chr11 29662956 29664253 -119119219 - L1P4 LINE L1 -563 5598 4285 854 226 204 16 chr11 29664252 29664566 -119118906 - L1MB1 LINE L1 -1 6167 5795 * 1159 187 37 40 chr11 29664566 29664839 -119118633 + MER45B DNA AcHobo 480 751 -289 1993 147 7 0 chr11 29665206 29665505 -119117967 + AluSx SINE Alu 5 305 -7 266 368 98 10 chr11 29665666 29665859 -119117613 + MIR SINE MIR 46 255 -7 483 299 27 18 chr11 29666514 29666738 -119116734 - L1MB1 LINE L1 -340 5781 5556 509 318 145 30 chr11 29666744 29667244 -119116228 + L2 LINE L2 2729 3312 -1 21 36 0 0 chr11 29667462 29667490 -119115982 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 29667526 29667549 -119115923 + AT_rich Low_complexity Low_complexity 1 23 0 211 305 8 34 chr11 29667726 29667844 -119115628 + A-rich Low_complexity Low_complexity 3 117 0 2012 122 28 0 chr11 29668894 29669208 -119114264 - AluSq SINE Alu 0 322 1 356 336 15 0 chr11 29669245 29669376 -119114096 - MIR SINE MIR -56 206 74 272 340 41 37 chr11 29670026 29670294 -119113178 - ERVL LTR ERVL -4342 1422 1154 9186 104 12 6 chr11 29670435 29671715 -119111757 - THE1A-int LTR MaLR -290 1290 3 2595 99 6 0 chr11 29671717 29672070 -119111402 - THE1A LTR MaLR 0 355 1 10420 215 62 24 chr11 29672528 29678874 -119104598 + L1PB1 LINE L1 31 6857 -10 924 164 13 0 chr11 29679006 29679158 -119104314 + THE1A LTR MaLR 202 355 0 2850 106 25 7 chr11 29679181 29679623 -119103849 + L1PA13 LINE L1 5714 6163 0 30 45 0 0 chr11 29679623 29679667 -119103805 + AT_rich Low_complexity Low_complexity 1 44 0 566 109 277 0 chr11 29679669 29679788 -119103684 + L1PA13 LINE L1 6001 6152 -11 328 304 86 50 chr11 29679924 29680670 -119102802 + L1MEc LINE L1 1039 1811 -4585 1371 283 43 48 chr11 29680912 29681931 -119101541 + L1M4 LINE L1 3339 4352 -1794 1319 158 41 12 chr11 29683037 29683283 -119100189 - Tigger2 DNA MER2_type 0 2718 2466 271 77 77 0 chr11 29683285 29683324 -119100148 + Tigger2 DNA MER2_type 3 44 -2674 2093 136 0 13 chr11 29683548 29683858 -119099614 - AluSx SINE Alu -6 306 1 207 354 49 12 chr11 29683944 29684026 -119099446 + MIR SINE MIR 23 107 -155 375 277 73 23 chr11 29684859 29685036 -119098436 - MER112 DNA MER1_type -9 251 66 270 176 0 0 chr11 29685734 29685785 -119097687 + (TG)n Simple_repeat Simple_repeat 2 52 0 703 379 75 7 chr11 29685809 29686385 -119097087 - L2 LINE L2 -970 2344 1730 1449 313 66 42 chr11 29686468 29687335 -119096137 + L2 LINE L2 2263 3150 -163 437 274 9 0 chr11 29688236 29688342 -119095130 - MER94 DNA DNA -15 119 13 1619 117 80 8 chr11 29688949 29689198 -119094274 - AluSg SINE Alu -19 291 25 25 0 0 0 chr11 29689388 29689413 -119094059 + AT_rich Low_complexity Low_complexity 1 25 0 577 304 33 19 chr11 29689464 29689678 -119093794 + MIR SINE MIR 32 248 -14 258 107 54 0 chr11 29689814 29689870 -119093602 + CT-rich Low_complexity Low_complexity 3 61 0 240 238 0 0 chr11 29690324 29690387 -119093085 + (TA)n Simple_repeat Simple_repeat 2 64 0 1255 273 50 70 chr11 29691563 29692120 -119091352 - MER77 LTR ERV1 -4 601 56 361 333 110 18 chr11 29693532 29693590 -119089882 - MIR SINE MIR -13 249 198 514 156 272 72 chr11 29693590 29693770 -119089702 + MER20 DNA MER1_type 4 219 0 361 333 110 18 chr11 29693770 29693939 -119089533 - MIR SINE MIR -64 198 1 474 347 90 12 chr11 29694612 29694946 -119088526 - L2 LINE L2 -456 2858 2499 234 322 185 19 chr11 29695049 29695260 -119088212 - MIR SINE MIR -16 246 1 413 289 72 7 chr11 29695879 29696031 -119087441 - MIR SINE MIR -68 194 33 491 184 20 10 chr11 29696239 29696337 -119087135 - MER20 DNA MER1_type 0 219 121 3331 142 21 20 chr11 29696337 29696447 -119087025 + L1MA8 LINE L1 5668 5776 -515 185 62 0 31 chr11 29696447 29696479 -119086993 + (TA)n Simple_repeat Simple_repeat 2 32 0 3331 142 21 20 chr11 29696479 29696972 -119086500 + L1MA8 LINE L1 5776 6272 -19 447 183 66 124 chr11 29697004 29697141 -119086331 - MER20 DNA MER1_type -90 129 1 374 305 44 35 chr11 29698267 29698470 -119085002 + MIR SINE MIR 2 206 -56 245 287 32 32 chr11 29698553 29698647 -119084825 - MER5B DNA MER1_type -59 119 26 1013 282 50 9 chr11 29698693 29699016 -119084456 - MER58B DNA MER1_type 0 341 6 770 236 62 0 chr11 29699028 29699206 -119084266 - MER5A DNA MER1_type 0 189 1 921 241 62 21 chr11 29699406 29699647 -119083825 + MIR SINE MIR 12 262 0 269 286 173 38 chr11 29700004 29700137 -119083335 - L2 LINE L2 -1 3271 3121 2800 88 44 14 chr11 29700275 29700706 -119082766 + MLT2A1 LTR ERVL 1 444 0 1857 194 80 39 chr11 29701303 29701788 -119081684 + MLT1D LTR MaLR 1 505 0 221 342 17 43 chr11 29702103 29702220 -119081252 + L2 LINE L2 2299 2412 -902 28 0 0 0 chr11 29702273 29702301 -119081171 + AT_rich Low_complexity Low_complexity 1 28 0 1050 297 103 24 chr11 29702345 29702871 -119080601 + L2 LINE L2 2505 3064 -249 280 216 54 14 chr11 29704030 29704104 -119079368 + MLT1K LTR MaLR 507 583 -5 342 0 0 0 chr11 29704557 29704595 -119078877 + (CA)n Simple_repeat Simple_repeat 2 39 0 561 278 67 0 chr11 29704826 29705035 -119078437 + L1M4 LINE L1 4007 4229 -1917 2071 161 77 17 chr11 29705153 29705557 -119077915 - MSTA LTR MaLR 0 428 1 997 152 30 18 chr11 29705710 29705874 -119077598 + AluJo SINE Alu 1 166 -146 307 392 87 15 chr11 29706066 29706400 -119077072 - L3 LINE CR1 -1215 362 5 3646 66 6 0 chr11 29706439 29706906 -119076566 - L1PA7 LINE L1 -324 5830 5361 2331 69 3 0 chr11 29706906 29707209 -119076263 + L1PA7 LINE L1 5847 6153 -1 253 291 76 0 chr11 29707816 29707895 -119075577 - L2 LINE L2 0 3272 3188 370 304 0 16 chr11 29708163 29708288 -119075184 - MIR SINE MIR -56 206 84 347 254 148 49 chr11 29709483 29709625 -119073847 - MLT1I LTR MaLR 0 409 254 460 150 12 12 chr11 29709694 29709774 -119073698 - MLT1I LTR MaLR -268 141 62 5642 140 72 39 chr11 29709807 29711033 -119072439 - MER11A LTR ERVK 0 1266 1 256 307 40 0 chr11 29711057 29711132 -119072340 + MIR SINE MIR 16 93 -169 368 258 21 86 chr11 29711195 29711381 -119072091 - L2 LINE L2 -1 3312 3139 * 1303 254 98 93 chr11 29711380 29712015 -119071457 - L2 LINE L2 -511 2803 2166 224 301 55 0 chr11 29712025 29712098 -119071374 + MIR SINE MIR 186 262 0 1566 179 3 28 chr11 29712478 29712763 -119070709 + AluJb SINE Alu 3 280 -32 273 89 0 0 chr11 29712763 29712808 -119070664 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2119 91 35 0 chr11 29712959 29713245 -119070227 + AluSg1 SINE Alu 1 296 -13 827 273 72 37 chr11 29713586 29714131 -119069341 + L1ME4a LINE L1 5547 6110 -11 244 162 0 0 chr11 29714556 29714593 -119068879 - MER53 DNA DNA -152 37 1 252 0 0 0 chr11 29715602 29715630 -119067842 + (TG)n Simple_repeat Simple_repeat 1 28 0 333 235 0 0 chr11 29716042 29716123 -119067349 - MER103 DNA DNA -78 88 8 646 194 8 8 chr11 29716461 29716585 -119066887 + MLT1A1 LTR MaLR 3 126 -239 1096 190 0 51 chr11 29716924 29717161 -119066311 - AluJb SINE Alu -4 308 84 1849 159 20 3 chr11 29718554 29718850 -119064622 + AluSx SINE Alu 1 301 -11 1099 219 11 14 chr11 29719241 29719520 -119063952 - L1P LINE L1 -772 5374 5097 23 33 0 0 chr11 29719996 29720026 -119063446 + AT_rich Low_complexity Low_complexity 1 30 0 436 319 4 94 chr11 29720691 29720926 -119062546 - L2 LINE L2 -230 3042 2829 28 0 0 0 chr11 29721412 29721440 -119062032 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 29721714 29721736 -119061736 + AT_rich Low_complexity Low_complexity 1 22 0 2144 110 7 10 chr11 29722361 29722670 -119060802 - AluSq SINE Alu -5 308 1 325 303 149 11 chr11 29723567 29723755 -119059717 + MIR SINE MIR 15 228 -34 239 54 27 0 chr11 29723868 29723905 -119059567 + (CA)n Simple_repeat Simple_repeat 1 38 0 380 160 100 40 chr11 29724952 29725052 -119058420 - LTR16C LTR ERVL -1 490 385 257 357 24 0 chr11 29725052 29725136 -119058336 - LTR16C LTR ERVL -270 221 136 357 310 58 41 chr11 29725553 29725724 -119057748 + MIR SINE MIR 15 188 -74 221 303 13 40 chr11 29725797 29725873 -119057599 + L3 LINE CR1 1497 1570 -7 2706 109 23 18 chr11 29726088 29726530 -119056942 - MLT2A1 LTR ERVL 0 444 1 1517 184 0 46 chr11 29727098 29727403 -119056069 + AluJb SINE Alu 6 296 -16 1553 284 72 2 chr11 29727404 29727837 -119055635 - MER45B DNA AcHobo -577 463 1 207 0 0 0 chr11 29727855 29727878 -119055594 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22000 52 5 5 chr11 29727901 29732887 -119050585 - L1PA5 LINE L1 -4 6150 1041 7375 104 3 5 chr11 29732889 29733930 -119049542 + L1PA5 LINE L1 13 1051 -5095 197 337 11 103 chr11 29734654 29734829 -119048643 - MIR SINE MIR -61 201 43 537 92 0 0 chr11 29735402 29735478 -119047994 + (GA)n Simple_repeat Simple_repeat 1 76 0 195 312 34 34 chr11 29736106 29736234 -119047238 - L2 LINE L2 -334 2979 2852 2759 90 11 13 chr11 29736410 29736921 -119046551 - L1PA7 LINE L1 -502 5652 5143 3492 100 0 6 chr11 29736921 29737416 -119046056 + L1PA7 LINE L1 5656 6151 -3 1785 149 8 67 chr11 29737792 29738167 -119045305 + THE1A LTR MaLR 1 353 -2 11369 105 4 1 chr11 29738169 29739744 -119043728 + THE1A-int LTR MaLR 1 1580 0 1693 144 8 107 chr11 29739744 29740126 -119043346 + THE1A LTR MaLR 1 344 -11 2264 122 34 3 chr11 29740195 29740547 -119042925 + THE1B LTR MaLR 1 363 -1 771 301 59 23 chr11 29740595 29741011 -119042461 - LTR33 LTR ERVL -2 519 12 747 343 62 82 chr11 29741487 29741667 -119041805 - L2 LINE L2 -12 3260 3078 1634 135 81 4 chr11 29741667 29741950 -119041522 + AluSx SINE Alu 5 307 0 747 343 62 82 chr11 29741950 29743044 -119040428 - L2 LINE L2 -194 3078 1990 336 207 17 52 chr11 29743512 29743686 -119039786 + (TA)n Simple_repeat Simple_repeat 1 168 0 421 285 8 41 chr11 29744283 29744406 -119039066 + L2 LINE L2 3151 3269 -3 203 279 106 19 chr11 29744678 29744782 -119038690 - MIR SINE MIR -16 246 134 246 273 91 32 chr11 29744799 29744953 -119038519 - L2 LINE L2 -2 3311 3149 5627 140 96 19 chr11 29745123 29745946 -119037526 + Tigger3b DNA MER2_type 3 931 -2097 203 61 30 0 chr11 29745946 29745979 -119037493 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5627 140 96 19 chr11 29745979 29746237 -119037235 + Tigger3b DNA MER2_type 931 1168 -63 478 214 31 0 chr11 29746318 29746416 -119037056 + Tigger3b DNA MER2_type 1129 1229 -2 271 295 49 0 chr11 29746419 29746480 -119036992 - L2 LINE L2 -8 3264 3201 210 298 0 0 chr11 29747442 29747499 -119035973 + MIR3 SINE MIR 151 207 -1 23 0 9 0 chr11 29747786 29747849 -119035623 + AT_rich Low_complexity Low_complexity 1 23 0 11462 214 22 8 chr11 29748192 29751927 -119031545 + L1PA15 LINE L1 2373 6163 -2 227 330 23 0 chr11 29752173 29752261 -119031211 - L1MC4 LINE L1 -1339 6703 6614 225 315 0 22 chr11 29752189 29752278 -119031194 + L1MC4 LINE L1 6614 6700 -1342 * 233 211 0 66 chr11 29752308 29752384 -119031088 - L1MCa LINE L1 -4361 2065 1995 29 0 0 0 chr11 29753476 29753505 -119029967 + AT_rich Low_complexity Low_complexity 1 29 0 427 194 0 32 chr11 29754161 29754254 -119029218 + MLT2B2 LTR ERVL 386 475 -40 375 408 73 35 chr11 29754366 29754707 -119028765 - L2 LINE L2 -341 2973 2620 281 26 0 26 chr11 29754855 29754894 -119028578 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 215 293 0 17 chr11 29757573 29757631 -119025841 + MIR SINE MIR 101 157 -105 564 289 45 20 chr11 29757638 29757839 -119025633 - MIR SINE MIR 0 262 57 277 337 122 0 chr11 29757840 29757938 -119025534 + MIR SINE MIR 153 262 0 332 177 114 0 chr11 29758577 29758656 -119024816 - LTR33 LTR ERVL 0 521 434 1088 296 61 58 chr11 29758676 29759138 -119024334 - LTR33 LTR ERVL -58 463 1 247 302 52 0 chr11 29759313 29759429 -119024043 - LTR67 LTR ERVL -2 555 434 531 315 44 1 chr11 29760133 29760314 -119023158 - MIR SINE MIR -41 221 36 490 157 0 0 chr11 29761383 29761466 -119022006 - L1MC3 LINE L1 -1 7784 7702 354 23 0 0 chr11 29762315 29762358 -119021114 + (TG)n Simple_repeat Simple_repeat 2 44 0 309 356 46 36 chr11 29762386 29762580 -119020892 - MIR SINE MIR -38 224 29 1968 128 0 20 chr11 29765209 29765514 -119017958 - AluSg SINE Alu -11 299 1 23 33 0 0 chr11 29765784 29765814 -119017658 + GC_rich Low_complexity Low_complexity 1 30 0 608 268 73 29 chr11 29766466 29766712 -119016760 - MLT1L LTR MaLR -2 613 357 245 186 0 43 chr11 29767695 29767765 -119015707 + T-rich Low_complexity Low_complexity 3 69 0 327 256 122 16 chr11 29767780 29768034 -119015438 + L1M4 LINE L1 2978 3258 -2888 186 189 0 0 chr11 29769012 29769049 -119014423 + (AACTG)n Simple_repeat Simple_repeat 4 40 0 390 319 25 6 chr11 29769447 29769607 -119013865 - MIR SINE MIR -27 235 73 706 262 45 41 chr11 29770143 29770364 -119013108 + MIR SINE MIR 31 252 -10 21 0 0 0 chr11 29772615 29772636 -119010836 + AT_rich Low_complexity Low_complexity 1 21 0 399 246 93 41 chr11 29772700 29772951 -119010521 - MLT1J LTR MaLR -233 217 1 373 305 48 18 chr11 29772977 29773144 -119010328 + L2 LINE L2 3115 3286 -27 1697 223 31 0 chr11 29773474 29773949 -119009523 - L1ME1 LINE L1 -3 6163 5539 1995 102 25 0 chr11 29773956 29774262 -119009210 - AluY SINE Alu 0 313 1 187 381 82 15 chr11 29774276 29774410 -119009062 + L2 LINE L2 2942 3084 -188 476 335 27 11 chr11 29775332 29775595 -119007877 - L1ME LINE L1 -359 5762 5496 758 297 13 17 chr11 29776495 29776731 -119006741 - MIR SINE MIR -3 259 25 321 167 19 0 chr11 29776872 29776926 -119006546 - MER45A DNA AcHobo 0 178 124 * 1339 295 64 102 chr11 29776922 29777579 -119005893 - MER45C DNA AcHobo -321 632 1 230 332 102 37 chr11 29777675 29777919 -119005553 + MIR SINE MIR 2 261 -1 251 149 0 45 chr11 29778042 29778109 -119005363 + L1MC4 LINE L1 6640 6703 -1339 245 221 0 53 chr11 29778143 29778238 -119005234 - L1MC4 LINE L1 -1339 6703 6614 278 167 17 0 chr11 29778239 29778299 -119005173 + (TA)n Simple_repeat Simple_repeat 1 61 0 526 325 95 9 chr11 29778299 29778530 -119004942 - MIR SINE MIR -11 251 1 245 261 140 70 chr11 29778539 29778696 -119004776 - MER5B DNA MER1_type -7 171 4 200 270 99 54 chr11 29778697 29778808 -119004664 + MER5B DNA MER1_type 15 130 -48 52 64 0 0 chr11 29779586 29779680 -119003792 + AT_rich Low_complexity Low_complexity 1 94 0 388 351 91 13 chr11 29779895 29780126 -119003346 + MIR SINE MIR 14 262 0 21 36 0 0 chr11 29783503 29783531 -118999941 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 29783631 29783654 -118999818 + AT_rich Low_complexity Low_complexity 1 23 0 219 369 94 28 chr11 29783930 29784282 -118999190 - L2 LINE L2 -694 2620 2246 312 313 49 49 chr11 29784824 29784968 -118998504 - MIR SINE MIR -70 192 49 183 200 50 0 chr11 29785051 29785091 -118998381 + MIR3 SINE MIR 165 206 -2 337 188 14 43 chr11 29785928 29785997 -118997475 + MER5A DNA MER1_type 48 114 -75 244 372 58 13 chr11 29785989 29786145 -118997327 + MIR SINE MIR 88 250 -12 * 1604 170 21 25 chr11 29786216 29786522 -118996950 + AluJb SINE Alu 1 305 0 210 208 0 0 chr11 29787213 29787266 -118996206 + (ATG)n Simple_repeat Simple_repeat 2 54 0 708 269 143 27 chr11 29787299 29787600 -118995872 + L2 LINE L2 2180 2515 -799 239 368 60 26 chr11 29787986 29788103 -118995369 - L2 LINE L2 -13 3259 3139 242 175 193 0 chr11 29788788 29788845 -118994627 - L2 LINE L2 -5 3308 3241 199 383 12 0 chr11 29789408 29789489 -118993983 - L2 LINE L2 0 3272 3191 347 363 83 21 chr11 29790713 29790953 -118992519 - MIR SINE MIR 0 262 8 284 342 100 0 chr11 29791890 29792010 -118991462 + L2 LINE L2 3141 3272 0 284 273 138 39 chr11 29792082 29792437 -118991035 - L1ME4a LINE L1 -3 6118 5729 708 127 83 104 chr11 29793312 29793550 -118989922 + AluJb SINE Alu 2 312 0 294 344 54 40 chr11 29794224 29794573 -118988899 - ERVL LTR ERVL -5070 694 341 482 258 54 16 chr11 29794765 29794951 -118988521 + MLT1F1 LTR MaLR 1 193 -374 1999 288 95 48 chr11 29794987 29796062 -118987410 - L1MCc LINE L1 -5134 1289 165 27 29 0 0 chr11 29796062 29796096 -118987376 + AT_rich Low_complexity Low_complexity 1 34 0 246 352 11 0 chr11 29796186 29796277 -118987195 - L3 LINE CR1 -24 1553 1462 7211 198 48 29 chr11 29796280 29797462 -118986010 - L1MC3 LINE L1 -2 7783 6556 291 54 0 0 chr11 29797462 29797499 -118985973 + (TA)n Simple_repeat Simple_repeat 1 37 0 7211 198 48 29 chr11 29797499 29798061 -118985411 - L1MC3 LINE L1 -1229 6556 6006 544 207 115 42 chr11 29798079 29798296 -118985176 - L1MCa LINE L1 -2097 4329 4097 2456 252 42 19 chr11 29798302 29799540 -118983932 - L1MCa LINE L1 -3113 3313 2049 25 0 0 0 chr11 29799624 29799649 -118983823 + AT_rich Low_complexity Low_complexity 1 25 0 961 211 144 20 chr11 29799649 29799930 -118983542 - MLT1A1 LTR MaLR -48 326 1 468 317 34 6 chr11 29799932 29800110 -118983362 - MIR SINE MIR -62 146 5 1865 148 16 0 chr11 29800127 29800432 -118983040 - Tigger2 DNA MER2_type 0 2718 2409 1393 13 0 0 chr11 29800446 29800605 -118982867 - L1HS LINE L1 0 6155 5997 * 4669 15 2 0 chr11 29800604 29801141 -118982331 + L1HS LINE L1 5480 6017 -138 707 295 40 0 chr11 29801281 29801481 -118981991 + MER58A DNA MER1_type 2 209 -15 660 193 75 37 chr11 29801501 29801688 -118981784 + MLT1F LTR MaLR 338 531 -11 453 278 153 91 chr11 29801829 29802445 -118981027 - LTR50 LTR ERVL 0 795 142 2155 126 0 10 chr11 29802445 29802755 -118980717 - AluSq SINE Alu -6 307 1 752 211 0 7 chr11 29803048 29803195 -118980277 + FRAM SINE Alu 28 173 -3 4572 170 17 14 chr11 29803654 29805302 -118978170 + L1MA8 LINE L1 4461 6260 -31 29 60 0 0 chr11 29805353 29805403 -118978069 + AT_rich Low_complexity Low_complexity 1 50 0 955 105 0 0 chr11 29805483 29805616 -118977856 - THE1C LTR MaLR -1 374 242 2348 146 15 33 chr11 29805616 29806197 -118977275 - L1MA8 LINE L1 -118 6173 5455 1242 128 20 0 chr11 29806201 29806396 -118977076 - THE1C LTR MaLR -176 199 1 213 385 33 0 chr11 29806396 29806487 -118976985 - L2 LINE L2 -45 3227 3134 637 176 118 6 chr11 29806519 29806689 -118976783 + MER53 DNA DNA 1 189 0 548 340 43 13 chr11 29807388 29807620 -118975852 - MIR SINE MIR -14 248 10 496 279 221 0 chr11 29807656 29807828 -118975644 - MIR SINE MIR -41 221 12 272 297 81 36 chr11 29807837 29807948 -118975524 - MIR SINE MIR -57 151 36 347 318 34 0 chr11 29808413 29808561 -118974911 - MER103 DNA DNA -3 163 11 299 244 26 0 chr11 29808694 29808772 -118974700 - MER5A DNA MER1_type -83 106 27 224 268 103 21 chr11 29809191 29809288 -118974184 - MIR SINE MIR -74 188 84 2616 233 52 10 chr11 29809647 29810441 -118973031 + L1MD2 LINE L1 4034 4860 -1286 3161 201 46 48 chr11 29810455 29811325 -118972147 - L1MB7 LINE L1 0 6184 5317 246 32 0 0 chr11 29811364 29811395 -118972077 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7829 16 0 0 chr11 29811411 29812976 -118970496 - L1PA2 LINE L1 0 6155 4591 6451 31 0 0 chr11 29812976 29813755 -118969717 + L1P LINE L1 1786 2564 -3582 1218 215 56 20 chr11 29813754 29814145 -118969327 - L1MB7 LINE L1 -815 5331 4927 * 4313 224 48 21 chr11 29814182 29815609 -118967863 + L1MD2 LINE L1 4893 6359 0 508 339 16 5 chr11 29815782 29815968 -118967504 + L2 LINE L2 2658 2845 -469 1421 285 71 32 chr11 29815986 29816510 -118966962 - MLT1E LTR MaLR -2 591 36 249 243 57 14 chr11 29816893 29816963 -118966509 - MIR SINE MIR -111 151 79 325 329 19 7 chr11 29817247 29817352 -118966120 + GA-rich Low_complexity Low_complexity 2 111 -47 1728 150 32 42 chr11 29817352 29817731 -118965741 + THE1C LTR MaLR 1 375 0 325 329 19 7 chr11 29817731 29817780 -118965692 + GA-rich Low_complexity Low_complexity 111 158 0 377 295 50 14 chr11 29817996 29818135 -118965337 - MIR SINE MIR -56 206 63 489 314 40 45 chr11 29819232 29819455 -118964017 + MIR SINE MIR 21 242 -20 654 251 66 43 chr11 29819833 29820044 -118963428 + MER20 DNA MER1_type 4 219 0 303 291 73 0 chr11 29820149 29820259 -118963213 + L3b LINE CR1 1267 1384 -199 746 118 83 104 chr11 29820552 29820790 -118962682 - AluJb SINE Alu 0 312 2 267 290 130 31 chr11 29821666 29822021 -118961451 + L1ME4a LINE L1 5729 6118 -3 302 333 100 0 chr11 29822093 29822213 -118961259 - L2 LINE L2 0 3272 3141 347 363 83 21 chr11 29823150 29823390 -118960082 + MIR SINE MIR 8 262 0 199 383 12 0 chr11 29824614 29824695 -118958777 + L2 LINE L2 3191 3272 0 242 175 193 0 chr11 29825256 29825313 -118958159 + L2 LINE L2 3241 3308 -5 239 368 60 26 chr11 29825998 29826115 -118957357 + L2 LINE L2 3139 3259 -13 713 269 143 27 chr11 29826501 29826802 -118956670 - L2 LINE L2 -799 2515 2180 210 208 0 0 chr11 29826835 29826888 -118956584 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2166 154 30 43 chr11 29827459 29827870 -118955602 + L1MA9 LINE L1 5858 6264 -48 1889 198 3 0 chr11 29827870 29828213 -118955259 - MER7A DNA MER2_type 0 346 5 2166 154 30 43 chr11 29828213 29828262 -118955210 + L1MA9 LINE L1 6264 6312 0 21 0 0 0 chr11 29829366 29829387 -118954085 + AT_rich Low_complexity Low_complexity 1 21 0 197 309 73 0 chr11 29829788 29829843 -118953629 - L2 LINE L2 -48 3224 3166 6341 31 0 0 chr11 29830271 29831020 -118952452 - L1PA4 LINE L1 -6 6149 5401 5268 29 2 0 chr11 29831017 29831644 -118951828 + L1P LINE L1 3587 4214 -1932 * 289 359 47 9 chr11 29831938 29832044 -118951428 - L2 LINE L2 -9 3304 3195 642 61 0 0 chr11 29832166 29832248 -118951224 - L1PA5 LINE L1 -163 5991 5910 266 73 0 0 chr11 29832243 29832284 -118951188 + L1PA6 LINE L1 6114 6154 0 * 23 68 0 0 chr11 29832299 29832343 -118951129 + AT_rich Low_complexity Low_complexity 1 44 0 252 0 0 0 chr11 29832775 29832803 -118950669 + (TG)n Simple_repeat Simple_repeat 2 29 0 332 354 31 0 chr11 29832996 29833126 -118950346 - MER94 DNA DNA 0 134 1 397 267 35 43 chr11 29833537 29833653 -118949819 + MIR SINE MIR 35 149 -59 229 349 0 0 chr11 29834196 29834279 -118949193 - MIR SINE MIR -109 153 71 265 382 14 14 chr11 29834787 29834931 -118948541 + MIR3 SINE MIR 65 208 0 301 355 95 12 chr11 29835282 29835524 -118947948 - MLT1K LTR MaLR -166 422 161 487 251 153 18 chr11 29835648 29835811 -118947661 + L2 LINE L2 3108 3292 -21 213 333 107 38 chr11 29835813 29835972 -118947500 - MIR SINE MIR -86 176 7 191 295 27 87 chr11 29836003 29836152 -118947320 + MIR SINE MIR 66 205 -57 180 206 0 0 chr11 29838255 29838289 -118945183 + L2 LINE L2 3183 3216 -56 951 71 0 0 chr11 29840181 29840308 -118943164 + AluY SINE Alu 185 311 0 238 176 231 33 chr11 29840664 29840755 -118942717 + MIR SINE MIR 98 206 -56 296 312 128 0 chr11 29841232 29841373 -118942099 + MIR SINE MIR 46 204 -58 225 154 0 0 chr11 29841373 29841412 -118942060 + (CA)n Simple_repeat Simple_repeat 1 39 0 2166 126 0 3 chr11 29842205 29842515 -118940957 - AluSq SINE Alu -4 309 1 372 290 37 37 chr11 29842611 29842773 -118940699 + MIR SINE MIR 47 208 -54 181 293 60 43 chr11 29843214 29843330 -118940142 + L2 LINE L2 2925 3042 -230 226 362 78 28 chr11 29843542 29843683 -118939789 + MLT1J LTR MaLR 70 217 -294 407 285 38 19 chr11 29843745 29843903 -118939569 + MLT1J LTR MaLR 313 473 -38 411 369 124 9 chr11 29844185 29844516 -118938956 + L2 LINE L2 2945 3313 0 242 116 23 0 chr11 29844516 29844559 -118938913 + GA-rich Low_complexity Low_complexity 3 46 0 1511 278 129 30 chr11 29845209 29845713 -118937759 + L2 LINE L2 1958 2410 -904 13537 133 32 39 chr11 29845713 29846049 -118937423 + Tigger1 DNA MER2_type 2 339 -2079 207 0 0 0 chr11 29846049 29846072 -118937400 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13537 133 32 39 chr11 29846072 29847536 -118935936 + Tigger1 DNA MER2_type 339 1783 -635 2006 138 3 0 chr11 29847536 29847833 -118935639 - AluSx SINE Alu -12 300 3 13537 133 32 39 chr11 29847833 29848465 -118935007 + Tigger1 DNA MER2_type 1783 2418 0 1511 278 129 30 chr11 29848465 29848633 -118934839 + L2 LINE L2 2410 2697 -617 995 262 88 94 chr11 29848691 29848819 -118934653 + L2 LINE L2 2579 2706 -607 777 232 6 17 chr11 29848819 29848996 -118934476 - FAM SINE Alu 0 175 1 995 262 88 94 chr11 29848996 29849613 -118933859 + L2 LINE L2 2706 3311 -2 3423 206 68 28 chr11 29849811 29850628 -118932844 - MER21B LTR ERV1 -1 862 13 21 57 0 0 chr11 29850708 29850743 -118932729 + AT_rich Low_complexity Low_complexity 1 35 0 703 189 16 0 chr11 29850822 29850949 -118932523 + AluJo SINE Alu 1 129 -183 239 67 50 17 chr11 29850951 29851011 -118932461 + (TA)n Simple_repeat Simple_repeat 2 63 0 974 221 0 0 chr11 29851015 29851196 -118932276 + AluJo SINE Alu 132 312 0 360 307 126 12 chr11 29851196 29851450 -118932022 + L1ME LINE L1 4407 4689 -1457 327 292 153 14 chr11 29851880 29852096 -118931376 + L1ME LINE L1 5260 5505 -657 658 349 84 8 chr11 29853048 29853429 -118930043 - L2 LINE L2 0 3313 2904 256 278 21 21 chr11 29853559 29853656 -118929816 - L2 LINE L2 -420 2894 2798 21 0 0 0 chr11 29854651 29854672 -118928800 + AT_rich Low_complexity Low_complexity 1 21 0 481 308 54 58 chr11 29855141 29855563 -118927909 + MLT1I LTR MaLR 1 409 0 405 0 0 0 chr11 29857101 29857146 -118926326 + (TC)n Simple_repeat Simple_repeat 2 46 0 288 0 0 0 chr11 29857145 29857177 -118926295 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 397 370 114 30 chr11 29857404 29857666 -118925806 + L2 LINE L2 2987 3270 -2 323 327 75 38 chr11 29857772 29858090 -118925382 + L2 LINE L2 2921 3250 -63 465 149 64 53 chr11 29858337 29858431 -118925041 - LTR65 LTR ERV1 -274 395 301 187 324 38 48 chr11 29858938 29859043 -118924429 + MIR SINE MIR 41 144 -118 487 222 97 40 chr11 29859059 29859235 -118924237 + MIR SINE MIR 3 188 -74 180 0 0 0 chr11 29859265 29859285 -118924187 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 189 0 0 0 chr11 29859284 29859305 -118924167 + (GA)n Simple_repeat Simple_repeat 2 22 0 240 356 30 20 chr11 29859838 29859939 -118923533 + MIR3 SINE MIR 93 194 -14 1632 145 55 3 chr11 29860020 29860310 -118923162 - MER7A DNA MER2_type -42 304 2 243 0 0 0 chr11 29860603 29860630 -118922842 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 306 317 25 8 chr11 29861217 29861337 -118922135 + MIR SINE MIR 101 222 -40 362 274 33 24 chr11 29862429 29862570 -118920902 - MIR SINE MIR -62 146 10 195 298 18 18 chr11 29862713 29862770 -118920702 - L2 LINE L2 -18 3295 3239 244 385 19 19 chr11 29864625 29864729 -118918743 + L2 LINE L2 3128 3231 -41 1881 169 0 3 chr11 29865179 29865510 -118917962 + L1MA7 LINE L1 5460 5789 -502 21 0 0 0 chr11 29865510 29865531 -118917941 + AT_rich Low_complexity Low_complexity 1 21 0 2098 173 60 31 chr11 29865639 29866126 -118917346 + L1MA7 LINE L1 5787 6287 -4 1212 190 0 0 chr11 29866130 29866325 -118917147 + AluSx SINE Alu 1 195 -117 310 345 59 8 chr11 29866565 29866684 -118916788 - MIR SINE MIR -115 147 23 2350 97 0 0 chr11 29867909 29868207 -118915265 - AluSg SINE Alu -12 298 1 290 122 27 135 chr11 29868351 29868425 -118915047 - MER116 DNA Mariner -10 70 5 279 0 0 0 chr11 29869452 29869483 -118913989 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 435 328 166 39 chr11 29869509 29870004 -118913468 - L2 LINE L2 -61 3252 2660 2480 54 0 3 chr11 29870004 29870300 -118913172 + AluY SINE Alu 1 295 -16 435 328 166 39 chr11 29870300 29870383 -118913089 - L2 LINE L2 -653 2660 2589 835 243 21 21 chr11 29872297 29872486 -118910986 - MER5A DNA MER1_type 0 189 1 2008 137 0 0 chr11 29875835 29876119 -118907353 - AluSx SINE Alu -28 284 1 1410 199 16 58 chr11 29877360 29877808 -118905664 - MER67D LTR ERV1 -4 510 3 337 313 134 34 chr11 29878065 29878244 -118905228 + MIR SINE MIR 54 250 -12 663 283 40 6 chr11 29879620 29879797 -118903675 + MIR SINE MIR 24 206 -56 517 146 39 10 chr11 29880190 29880293 -118903179 + MLT2B2 LTR ERVL 1 106 -409 375 191 9 19 chr11 29880297 29880402 -118903070 + (TA)n Simple_repeat Simple_repeat 2 105 0 204 40 0 0 chr11 29880402 29880427 -118903045 + (GA)n Simple_repeat Simple_repeat 2 26 0 330 148 0 0 chr11 29880431 29880485 -118902987 + MLT2B1 LTR ERVL 467 520 0 2972 109 12 0 chr11 29880859 29881282 -118902190 - MSTA LTR MaLR 0 428 1 2574 122 0 11 chr11 29881847 29882215 -118901257 - THE1B LTR MaLR 0 364 1 1481 193 15 4 chr11 29883607 29883872 -118899600 - MLT1A1 LTR MaLR 0 365 98 273 29 0 0 chr11 29884083 29884117 -118899355 + (TA)n Simple_repeat Simple_repeat 2 35 0 379 331 39 8 chr11 29884494 29884624 -118898848 - MIR SINE MIR -97 165 32 184 304 0 0 chr11 29885143 29885189 -118898283 + MIR SINE MIR 74 119 -89 413 286 6 10 chr11 29885639 29885770 -118897702 - MIR SINE MIR -63 145 22 309 346 0 10 chr11 29886500 29886601 -118896871 - MIR SINE MIR -6 256 157 513 311 97 15 chr11 29886637 29886843 -118896629 - MIR SINE MIR -14 248 26 180 0 0 0 chr11 29886962 29886982 -118896490 + (TA)n Simple_repeat Simple_repeat 2 21 0 1861 159 121 21 chr11 29887121 29887510 -118895962 + MSTA LTR MaLR 1 428 0 410 324 34 21 chr11 29887556 29887794 -118895678 - L1ME LINE L1 -369 5752 5512 621 195 8 0 chr11 29887802 29887920 -118895552 + MLT1A1 LTR MaLR 247 365 0 238 287 106 11 chr11 29888482 29888576 -118894896 - MER103 DNA DNA -57 109 7 1521 120 28 0 chr11 29888911 29889161 -118894311 + L1MA8 LINE L1 6024 6280 -11 860 138 0 36 chr11 29889524 29889662 -118893810 + FLAM_C SINE Alu 1 133 -10 21 82 0 0 chr11 29889806 29889855 -118893617 + AT_rich Low_complexity Low_complexity 1 49 0 329 277 10 40 chr11 29890715 29890816 -118892656 + MIR SINE MIR 71 168 -94 247 302 174 5 chr11 29891634 29891846 -118891626 + L1ME LINE L1 5566 5813 -308 870 312 58 11 chr11 29893360 29893719 -118889753 - L2 LINE L2 0 3313 2938 211 329 91 49 chr11 29894499 29894642 -118888830 - L2 LINE L2 0 3313 3165 358 287 63 21 chr11 29894657 29894800 -118888672 + MIR SINE MIR 104 252 -10 794 203 26 42 chr11 29894841 29895033 -118888439 - MER5A DNA MER1_type 0 189 1 217 382 114 32 chr11 29895323 29895446 -118888026 + L2 LINE L2 3129 3261 -11 810 243 29 0 chr11 29895814 29895987 -118887485 + MER45A DNA AcHobo 1 178 0 185 343 162 0 chr11 29896093 29896198 -118887274 + MIR3 SINE MIR 82 203 -5 309 301 146 50 chr11 29897301 29897500 -118885972 - MIR SINE MIR -41 221 4 16334 53 3 2 chr11 29897905 29900761 -118882711 - L1PA5 LINE L1 -1 6153 3302 485 202 11 0 chr11 29900900 29900994 -118882478 + LTR67 LTR ERVL 449 543 -14 322 284 120 48 chr11 29901616 29901867 -118881605 + L2 LINE L2 2597 2864 -450 34 24 0 0 chr11 29902365 29902406 -118881066 + AT_rich Low_complexity Low_complexity 1 41 0 342 335 40 23 chr11 29902442 29902618 -118880854 - MIR SINE MIR -71 191 13 1104 191 48 75 chr11 29902678 29903050 -118880422 - L1MB8 LINE L1 0 6178 5817 545 275 41 17 chr11 29903327 29903656 -118879816 + MER115 DNA AcHobo 316 692 -1 7212 40 2 10 chr11 29904620 29905522 -118877950 - L1PA5 LINE L1 -1 6153 5259 215 158 0 26 chr11 29905607 29905645 -118877827 - MIR SINE MIR -147 115 79 281 230 109 52 chr11 29906895 29907055 -118876417 - MIR3 SINE MIR -59 149 3 423 232 18 9 chr11 29907138 29907250 -118876222 - MER117 DNA MER1_type -84 113 1 492 227 0 0 chr11 29907604 29907723 -118875749 + GA-rich Low_complexity Low_complexity 1 119 0 315 303 103 50 chr11 29907731 29907992 -118875480 + L2 LINE L2 3038 3312 -1 198 353 86 17 chr11 29908532 29908648 -118874824 + MIR SINE MIR 20 143 -119 28 0 0 0 chr11 29910083 29910111 -118873361 + AT_rich Low_complexity Low_complexity 1 28 0 531 216 0 0 chr11 29911084 29911186 -118872286 + MER7A DNA MER2_type 2 101 -245 23110 42 1 3 chr11 29911186 29914867 -118868605 - L1PA4 LINE L1 -3 6152 2471 1492 216 37 58 chr11 29914867 29915382 -118868090 - L1M4 LINE L1 -1320 5637 5134 2579 271 93 46 chr11 29915401 29917645 -118865827 - L1M4 LINE L1 -3853 3104 742 375 291 91 17 chr11 29917639 29917814 -118865658 - L1M4 LINE L1 -6670 189 2 * 200 143 65 26 chr11 29917866 29917943 -118865529 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 96 0 0 chr11 29917973 29918046 -118865426 + AT_rich Low_complexity Low_complexity 1 73 0 399 299 87 68 chr11 29918047 29918682 -118864790 - L1MEc LINE L1 -1708 4507 3861 449 208 0 104 chr11 29918922 29919066 -118864406 - L2 LINE L2 -1270 2044 1916 548 315 112 70 chr11 29919102 29919575 -118863897 + L2 LINE L2 2003 2495 -819 474 301 132 25 chr11 29919629 29920024 -118863448 - L1MEc LINE L1 -2887 3328 2892 2404 80 0 0 chr11 29921510 29921821 -118861651 - AluY SINE Alu 0 311 1 4629 32 0 0 chr11 29921835 29922388 -118861084 + L1PA4 LINE L1 5603 6155 0 21 36 0 0 chr11 29922751 29922779 -118860693 + AT_rich Low_complexity Low_complexity 1 28 0 545 261 92 19 chr11 29922819 29923026 -118860446 + MIR SINE MIR 37 258 -4 300 336 18 0 chr11 29923274 29923387 -118860085 - MIR3 SINE MIR -7 201 87 703 211 77 5 chr11 29923454 29923648 -118859824 - L1MC3 LINE L1 -18 7767 7560 1881 259 137 7 chr11 29923741 29924471 -118859001 + L1M4c LINE L1 969 1793 -4591 200 216 0 0 chr11 29924538 29924575 -118858897 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2161 217 42 6 chr11 29924576 29925079 -118858393 + L1MB7 LINE L1 5644 6164 -20 1081 230 73 14 chr11 29925148 29925505 -118857967 + L1ME2 LINE L1 5768 6145 -19 26 50 0 0 chr11 29926125 29926165 -118857307 + AT_rich Low_complexity Low_complexity 1 40 0 273 349 46 9 chr11 29926201 29926310 -118857162 - MIR SINE MIR -139 123 11 211 392 7 28 chr11 29926334 29926477 -118856995 - MIR3 SINE MIR -62 146 7 249 305 12 0 chr11 29926954 29927036 -118856436 + MIR SINE MIR 172 254 -8 9213 28 2 0 chr11 29927213 29929079 -118854393 - L1PA4 LINE L1 -3 6152 4285 40 49 0 0 chr11 29929466 29929527 -118853945 + AT_rich Low_complexity Low_complexity 1 61 0 215 110 93 17 chr11 29929639 29929757 -118853715 + (TA)n Simple_repeat Simple_repeat 2 128 0 411 222 11 11 chr11 29929789 29929969 -118853503 + (TA)n Simple_repeat Simple_repeat 1 180 0 483 253 82 0 chr11 29930157 29930327 -118853145 - L1MEc LINE L1 -3641 2574 2391 1843 240 125 15 chr11 29930353 29930873 -118852599 + MLT1E1 LTR MaLR 58 634 -20 313 282 54 54 chr11 29930892 29931133 -118852339 - L1MEc LINE L1 -3816 2399 2183 230 314 117 38 chr11 29931222 29931694 -118851778 - L1MEc LINE L1 -4542 1854 1346 3554 133 11 0 chr11 29931828 29932386 -118851086 - L1PA16 LINE L1 -9 6157 5594 230 272 148 0 chr11 29932641 29932722 -118850750 - L2 LINE L2 0 3313 3221 22 35 0 0 chr11 29933094 29933123 -118850349 + AT_rich Low_complexity Low_complexity 1 29 0 295 282 128 8 chr11 29933332 29933449 -118850023 - MIR SINE MIR -59 203 73 550 191 25 157 chr11 29933537 29933772 -118849700 - L2 LINE L2 0 3313 3110 1962 186 3 19 chr11 29934957 29935328 -118848144 - MLT1A1 LTR MaLR 0 365 1 1459 109 19 0 chr11 29935652 29935863 -118847609 + L1PA10 LINE L1 5938 6152 -16 1203 197 119 44 chr11 29936429 29936790 -118846682 - MER89 LTR ERV1 0 559 172 278 262 24 0 chr11 29937130 29937214 -118846258 + CT-rich Low_complexity Low_complexity 1 86 0 387 295 195 54 chr11 29939159 29939682 -118843790 + L2 LINE L2 2681 3291 -22 831 200 19 12 chr11 29939682 29939842 -118843630 - Tigger3(Golem) DNA MER2_type -1 3028 2868 294 160 0 0 chr11 29939837 29939887 -118843585 - Tigger3(Golem) DNA MER2_type -89 2940 2891 * 365 97 0 97 chr11 29939890 29939962 -118843510 - Tigger3(Golem) DNA MER2_type -96 2933 2869 349 111 0 97 chr11 29939980 29940052 -118843420 - Tigger3(Golem) DNA MER2_type -96 2933 2869 322 200 0 31 chr11 29940047 29940112 -118843360 - Tigger3(Golem) DNA MER2_type -89 2940 2878 * 303 152 25 89 chr11 29940094 29940173 -118843299 - Tigger3(Golem) DNA MER2_type -79 2950 2877 * 347 183 0 81 chr11 29940166 29940292 -118843180 - Tigger3(Golem) DNA MER2_type -74 2955 2869 307 171 0 98 chr11 29940300 29940382 -118843090 - Tigger3(Golem) DNA MER2_type -88 2941 2868 * 393 94 71 82 chr11 29940379 29940464 -118843008 - Tigger3(Golem) DNA MER2_type -78 2951 2868 250 185 93 0 chr11 29940479 29940533 -118842939 - Tigger3(Golem) DNA MER2_type -84 2945 2887 304 189 24 52 chr11 29940533 29940658 -118842814 - Tigger3(Golem) DNA MER2_type -78 2951 2844 279 139 0 0 chr11 29940695 29940738 -118842734 - Tigger3(Golem) DNA MER2_type -97 2932 2890 902 108 89 32 chr11 29940764 29940922 -118842550 - Tigger3(Golem) DNA MER2_type -91 2938 2772 19576 39 5 0 chr11 29940922 29944115 -118839357 + L1PA4 LINE L1 2954 6152 -3 276 206 0 32 chr11 29944133 29944196 -118839276 + L1M4 LINE L1 4810 4870 -1276 1285 195 49 21 chr11 29944203 29944635 -118838837 + L1M4 LINE L1 5104 5555 -619 304 381 44 11 chr11 29944746 29944927 -118838545 - L2 LINE L2 -229 3043 2857 271 91 36 0 chr11 29945614 29945669 -118837803 - LTR66 LTR ERVL -160 450 394 22 88 0 0 chr11 29945681 29945738 -118837734 + AT_rich Low_complexity Low_complexity 1 57 0 342 243 29 0 chr11 29945787 29945927 -118837545 + (TA)n Simple_repeat Simple_repeat 2 145 0 187 343 0 29 chr11 29946966 29947036 -118836436 + MIR SINE MIR 23 90 -118 647 276 133 55 chr11 29947597 29947981 -118835491 - MLT1J1 LTR MaLR 0 446 33 248 356 0 0 chr11 29948007 29948097 -118835375 - MIR SINE MIR -72 190 101 2003 238 39 65 chr11 29949576 29950350 -118833122 - L1ME1 LINE L1 -5 6230 5477 302 0 26 0 chr11 29950365 29950403 -118833069 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 363 239 28 9 chr11 29950407 29950516 -118832956 + L1MA10 LINE L1 6224 6334 0 2714 251 79 14 chr11 29950570 29951548 -118831924 - L1ME1 LINE L1 -1318 4897 3857 325 283 42 30 chr11 29951553 29951719 -118831753 - L1ME1 LINE L1 -2647 3568 3401 * 2848 229 85 42 chr11 29951714 29952693 -118830779 - L1MD2 LINE L1 -2 6357 5338 2080 261 34 26 chr11 29952833 29953672 -118829800 - L1ME1 LINE L1 -2994 3221 2373 252 86 0 0 chr11 29953672 29953707 -118829765 + (TG)n Simple_repeat Simple_repeat 2 36 0 2080 261 34 26 chr11 29953707 29953748 -118829724 - L1ME1 LINE L1 -3842 2373 2334 1894 99 7 7 chr11 29953797 29954069 -118829403 - AluSc SINE Alu -1 308 37 1330 145 45 22 chr11 29954113 29954382 -118829090 - L1MC2 LINE L1 -4 6340 6066 483 175 269 34 chr11 29954402 29954636 -118828836 - MER4C LTR ERV1 -20 445 157 1369 156 53 47 chr11 29954661 29955000 -118828472 - MER4A LTR ERV1 -323 341 1 1613 174 23 11 chr11 29955002 29955353 -118828119 - L1MC2 LINE L1 -287 6057 5703 1364 277 92 49 chr11 29955369 29956012 -118827460 - L1ME1 LINE L1 -4102 2294 1680 1802 126 79 7 chr11 29956012 29956289 -118827183 - AluSg SINE Alu -13 297 1 1364 277 92 49 chr11 29956289 29957030 -118826442 - L1ME1 LINE L1 -4716 1680 850 610 189 0 0 chr11 29957185 29957291 -118826181 + Tigger3(Golem) DNA MER2_type 2929 3034 0 601 305 76 44 chr11 29957296 29957703 -118825769 - L1ME1 LINE L1 -5900 496 77 297 128 0 0 chr11 29957705 29957752 -118825720 + (TA)n Simple_repeat Simple_repeat 2 48 0 3963 68 0 2 chr11 29957759 29958291 -118825181 - L1PA7 LINE L1 -61 6093 5563 22 35 0 0 chr11 29958335 29958364 -118825108 + AT_rich Low_complexity Low_complexity 1 29 0 731 52 0 0 chr11 29958511 29958608 -118824864 + L1P LINE L1 2 98 -6048 * 9583 55 94 5 chr11 29958602 29959983 -118823489 + L1P LINE L1 617 2120 -4026 2398 206 34 8 chr11 29960083 29960586 -118822886 + MLT2B3 LTR ERVL 10 473 -47 313 167 12 12 chr11 29960587 29960671 -118822801 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 270 311 33 11 chr11 29961021 29961111 -118822361 + L2 LINE L2 3215 3306 -7 218 254 0 0 chr11 29961970 29962025 -118821447 + (CACCAT)n Simple_repeat Simple_repeat 5 59 0 2970 169 11 2 chr11 29962161 29962718 -118820754 + L1MA8 LINE L1 5547 6108 -183 192 97 0 0 chr11 29962831 29962862 -118820610 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr11 29963418 29963439 -118820033 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 29963570 29963591 -118819881 + AT_rich Low_complexity Low_complexity 1 21 0 775 134 21 14 chr11 29965361 29965503 -118817969 - MER4D LTR ERV1 0 903 761 3481 187 7 22 chr11 29965587 29966316 -118817156 - MER4D LTR ERV1 -179 724 7 312 388 27 27 chr11 29966409 29966633 -118816839 - L2 LINE L2 -243 3070 2847 349 243 99 0 chr11 29966645 29966756 -118816716 - MER94 DNA DNA -9 125 4 1019 333 134 19 chr11 29967410 29968035 -118815437 - L2 LINE L2 -509 2805 2109 1942 133 42 48 chr11 29968391 29968768 -118814704 - THE1C LTR MaLR 0 375 1 476 264 135 0 chr11 29968769 29968932 -118814540 + L2 LINE L2 3126 3310 -3 368 232 60 13 chr11 29970993 29971144 -118812328 + MER103 DNA DNA 9 166 0 180 321 0 18 chr11 29971440 29971496 -118811976 + L2 LINE L2 2980 3034 -238 381 278 80 46 chr11 29971500 29971651 -118811821 - MIR3 SINE MIR -3 205 50 587 350 71 43 chr11 29972466 29973003 -118810469 + L2 LINE L2 2245 2796 -518 1891 213 86 13 chr11 29973328 29973792 -118809680 - MER77 LTR ERV1 -9 596 99 304 367 50 0 chr11 29973858 29973978 -118809494 + L2 LINE L2 3146 3271 -1 3409 98 15 26 chr11 29974477 29975019 -118808453 - L1PA8A LINE L1 -1 6445 5910 294 286 0 0 chr11 29975024 29975129 -118808343 + C-rich Low_complexity Low_complexity 1 105 0 23072 155 16 15 chr11 29975229 29980746 -118802726 - L1PA8A LINE L1 -877 5584 3 277 301 12 110 chr11 29981004 29981099 -118802373 + L2 LINE L2 2692 2764 -550 2287 118 0 0 chr11 29981099 29981404 -118802068 + AluY SINE Alu 1 305 -6 277 301 12 110 chr11 29981404 29981481 -118801991 + L2 LINE L2 2764 2847 -467 181 0 33 33 chr11 29981496 29981526 -118801946 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 250 261 163 13 chr11 29981533 29981686 -118801786 - AluYb8 SINE Alu -27 281 106 551 268 14 0 chr11 29982006 29982148 -118801324 - MER63A DNA MER1_type -3 207 64 1948 97 54 0 chr11 29982764 29983023 -118800449 + AluSg SINE Alu 20 292 -18 4030 191 18 23 chr11 29983533 29984428 -118799044 + L1P LINE L1 4202 5093 -1053 2056 138 51 25 chr11 29984428 29984783 -118798689 - THE1B LTR MaLR 0 364 1 4030 191 18 23 chr11 29984783 29984876 -118798596 + L1P LINE L1 5093 5185 -961 216 67 0 0 chr11 29985309 29985339 -118798133 + (CA)n Simple_repeat Simple_repeat 1 30 0 1523 188 4 4 chr11 29986582 29986848 -118796624 - AluSx SINE Alu -46 266 1 385 237 17 7 chr11 29988030 29988151 -118795321 - AluS SINE Alu -208 95 1 3174 190 24 5 chr11 29988153 29988791 -118794681 - THE1B-int LTR MaLR -304 1347 698 313 321 52 72 chr11 29989377 29989667 -118793805 - L2 LINE L2 -765 2549 2266 666 43 0 43 chr11 29991960 29992054 -118791418 + LTR13 LTR ERVK 1 90 -917 862 163 43 5 chr11 29992335 29992519 -118790953 - L1MA7 LINE L1 -265 6026 5836 733 293 79 19 chr11 29993446 29993862 -118789610 + Tigger8 DNA MER2_type 39 479 -187 6714 111 16 6 chr11 29994188 29995852 -118787620 - L1PA8A LINE L1 -220 5911 4239 1061 132 0 117 chr11 29995952 29996165 -118787307 - AluSg SINE Alu -122 188 1 420 288 44 12 chr11 29996172 29996332 -118787140 + L2 LINE L2 3119 3283 -30 972 299 110 36 chr11 29998249 29998655 -118784817 + L2 LINE L2 2806 3253 -60 350 42 21 0 chr11 29998655 29998703 -118784769 + (TG)n Simple_repeat Simple_repeat 2 50 0 972 299 110 36 chr11 29998703 29998768 -118784704 + L2 LINE L2 3253 3312 -1 1142 247 184 43 chr11 29998806 29999312 -118784160 + MLT1G1 LTR MaLR 1 577 -18 1425 180 46 3 chr11 29999395 29999679 -118783793 + MER46B DNA MER2_type 63 233 -3 3000 162 30 25 chr11 29999837 30000466 -118783006 + L1MB3 LINE L1 5551 6182 -1 21 0 0 0 chr11 30000655 30000676 -118782796 + AT_rich Low_complexity Low_complexity 1 21 0 210 208 0 0 chr11 30001003 30001051 -118782421 + (TA)n Simple_repeat Simple_repeat 2 49 0 281 26 26 0 chr11 30001151 30001189 -118782283 + (CA)n Simple_repeat Simple_repeat 2 40 0 2074 173 84 0 chr11 30002577 30002970 -118780502 + MSTB LTR MaLR 1 426 0 227 268 187 43 chr11 30003611 30003846 -118779626 + L2 LINE L2 2487 2755 -559 199 347 32 0 chr11 30003955 30004050 -118779422 + L2 LINE L2 2180 2277 -1037 1096 274 88 25 chr11 30004147 30004718 -118778754 + L2 LINE L2 2710 3313 0 224 342 34 26 chr11 30004735 30004852 -118778620 + L2 LINE L2 2870 2987 -285 331 263 138 67 chr11 30005793 30006017 -118777455 + L1ME4a LINE L1 4017 4256 -1890 564 203 24 50 chr11 30006164 30006349 -118777123 - L1ME LINE L1 -656 5508 5329 43 47 0 0 chr11 30006496 30006560 -118776912 + GC_rich Low_complexity Low_complexity 1 64 0 213 39 0 0 chr11 30006790 30006816 -118776656 + (TG)n Simple_repeat Simple_repeat 2 27 0 243 125 0 0 chr11 30009007 30009047 -118774425 + (CA)n Simple_repeat Simple_repeat 1 40 0 404 292 57 67 chr11 30010668 30011072 -118772400 + L1ME4a LINE L1 5496 5895 -226 35 63 0 0 chr11 30011220 30011283 -118772189 + AT_rich Low_complexity Low_complexity 1 63 0 1570 196 16 53 chr11 30012100 30012477 -118770995 - MLT1A1 LTR MaLR 0 365 3 223 140 70 0 chr11 30014479 30014536 -118768936 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 201 154 0 0 chr11 30014583 30014622 -118768850 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 236 36 0 chr11 30014639 30014694 -118768778 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 1355 191 57 14 chr11 30014694 30014976 -118768496 - MLT2C1 LTR ERVL -48 349 56 1486 250 71 62 chr11 30015468 30016054 -118767418 - MLT1G LTR MaLR 0 590 1 186 211 0 26 chr11 30017102 30017140 -118766332 + L2 LINE L2 3220 3256 -16 2020 128 3 0 chr11 30017198 30017539 -118765933 + AluSc SINE Alu 1 309 0 925 159 26 91 chr11 30017613 30017845 -118765627 + MER20 DNA MER1_type 2 218 -1 235 280 7 77 chr11 30018510 30018653 -118764819 + MIR SINE MIR 118 250 -12 1565 175 0 74 chr11 30019316 30019653 -118763819 + AluJo SINE Alu 1 312 0 2337 81 3 3 chr11 30020220 30020528 -118762944 + AluY SINE Alu 1 308 -3 369 109 0 0 chr11 30021567 30021582 -118761890 + (CA)n Simple_repeat Simple_repeat 1 70 0 369 109 0 0 chr11 30021582 30021637 -118761835 + (CA)n Simple_repeat Simple_repeat 2 56 0 182 36 0 36 chr11 30021900 30021928 -118761544 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2831 35 6 0 chr11 30021928 30022268 -118761204 - L1PA3 LINE L1 -19 6136 5795 252 0 0 0 chr11 30022427 30022455 -118761017 + (TG)n Simple_repeat Simple_repeat 2 29 0 1755 162 7 0 chr11 30022466 30022737 -118760735 - AluJo SINE Alu -37 275 3 236 289 70 26 chr11 30022820 30022934 -118760538 - MLT1L LTR MaLR -116 499 381 207 381 75 14 chr11 30024965 30025112 -118758360 + L2 LINE L2 3117 3272 0 976 282 24 38 chr11 30025288 30025628 -118757844 + MER102b DNA MER1_type 1 335 -6 458 347 6 6 chr11 30026352 30026519 -118756953 - MIR SINE MIR -10 252 86 229 286 105 40 chr11 30026591 30026747 -118756725 - MIR3 SINE MIR -15 193 29 186 209 0 0 chr11 30026814 30026857 -118756615 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 307 291 53 102 chr11 30027790 30028075 -118755397 + L1M2 LINE L1 797 1067 -5782 10660 215 58 52 chr11 30028260 30031011 -118752461 + L1P4 LINE L1 371 3397 -2825 207 0 0 0 chr11 30031011 30031034 -118752438 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10660 215 58 52 chr11 30031034 30033146 -118750326 + L1P4 LINE L1 3397 5495 -727 277 128 0 0 chr11 30083708 30083747 -118699725 - 5S rRNA rRNA -79 42 4 736 185 104 28 chr11 30083868 30084079 -118699393 - MER33 DNA MER1_type -93 231 5 194 189 0 19 chr11 30084311 30084364 -118699108 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 328 299 28 0 chr11 30084900 30085044 -118698428 - MER103 DNA DNA -11 155 8 639 208 0 8 chr11 30085382 30085507 -118697965 + MLT1A1 LTR MaLR 3 126 -239 1089 190 0 51 chr11 30085845 30086082 -118697390 - AluJb SINE Alu -4 308 84 1712 173 16 16 chr11 30087475 30087787 -118695685 + AluSx SINE Alu 1 312 0 4625 130 12 7 chr11 30087904 30088789 -118694683 - L1PA16 LINE L1 -184 5982 5097 186 275 113 12 chr11 30089180 30089260 -118694212 + MIR SINE MIR 120 207 -55 23 33 0 0 chr11 30089265 30089295 -118694177 + AT_rich Low_complexity Low_complexity 1 30 0 418 311 8 98 chr11 30089960 30090195 -118693277 - L2 LINE L2 -230 3042 2829 28 0 0 0 chr11 30090681 30090709 -118692763 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 30090983 30091005 -118692467 + AT_rich Low_complexity Low_complexity 1 22 0 2208 100 7 7 chr11 30091629 30091938 -118691534 - AluSq SINE Alu -4 309 1 336 303 149 11 chr11 30092835 30093023 -118690449 + MIR SINE MIR 15 228 -34 239 54 27 0 chr11 30093136 30093173 -118690299 + (CA)n Simple_repeat Simple_repeat 1 38 0 378 230 60 0 chr11 30094220 30094320 -118689152 - LTR16C LTR ERVL -1 490 385 259 357 24 0 chr11 30094320 30094404 -118689068 - LTR16C LTR ERVL -270 221 136 361 310 58 41 chr11 30094821 30094992 -118688480 + MIR SINE MIR 15 188 -74 224 303 13 40 chr11 30095065 30095141 -118688331 + L3 LINE CR1 1497 1570 -7 2683 109 23 18 chr11 30095356 30095798 -118687674 - MLT2A1 LTR ERVL 0 444 1 182 321 37 25 chr11 30096209 30096290 -118687182 + L3 LINE CR1 1494 1575 -2 1965 147 7 0 chr11 30096329 30096628 -118686844 + AluSx SINE Alu 5 305 -7 276 368 98 10 chr11 30096789 30096982 -118686490 + MIR SINE MIR 46 255 -7 503 299 27 18 chr11 30097637 30097861 -118685611 - L1ME LINE L1 -340 5781 5556 527 323 132 23 chr11 30097867 30098368 -118685104 + L2 LINE L2 2729 3312 -1 21 36 0 0 chr11 30098586 30098614 -118684858 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 30098650 30098673 -118684799 + AT_rich Low_complexity Low_complexity 1 23 0 975 136 17 57 chr11 30099222 30099399 -118684073 + Tigger2a DNA MER2_type 2 171 -263 1790 194 57 16 chr11 30099408 30099795 -118683677 - Tigger2 DNA MER2_type -1 2717 2315 1679 92 66 82 chr11 30099817 30100121 -118683351 - AluY SINE Alu -10 301 3 341 153 0 69 chr11 30100135 30100153 -118683319 - Tigger2 DNA MER2_type -2649 69 51 1428 212 7 26 chr11 30100153 30100455 -118683017 + AluJo SINE Alu 1 296 -16 341 153 0 69 chr11 30100455 30100508 -118682964 - Tigger2 DNA MER2_type -2667 51 3 1330 161 40 12 chr11 30100508 30100756 -118682716 + Tigger2 DNA MER2_type 2464 2718 0 1484 291 39 44 chr11 30101862 30102881 -118680591 - L1M4 LINE L1 -1794 4352 3339 383 306 86 50 chr11 30103123 30103869 -118679603 - L1MEc LINE L1 -4585 1811 1039 552 113 248 30 chr11 30103991 30104124 -118679348 - L1PA13 LINE L1 -1 6162 6001 30 45 0 0 chr11 30104126 30104170 -118679302 + AT_rich Low_complexity Low_complexity 1 44 0 2850 106 25 7 chr11 30104170 30104612 -118678860 - L1PA13 LINE L1 0 6163 5714 2371 126 3 6 chr11 30104635 30104991 -118678481 - THE1A LTR MaLR 0 355 1 11400 98 10 5 chr11 30104991 30106561 -118676911 - THE1A-int LTR MaLR 0 1580 3 2595 99 6 0 chr11 30106563 30106916 -118676556 - THE1A LTR MaLR 0 355 1 9065 187 40 17 chr11 30107374 30113703 -118669769 + L1PB1 LINE L1 31 6866 -1 506 278 4 0 chr11 30114183 30114445 -118669027 + (TA)n Simple_repeat Simple_repeat 1 263 0 12183 212 23 8 chr11 30114662 30118398 -118665074 - L1PA15 LINE L1 -2 6163 2373 23 0 0 0 chr11 30118741 30118764 -118664708 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 30118783 30118804 -118664668 + AT_rich Low_complexity Low_complexity 1 21 0 210 298 0 0 chr11 30119227 30119284 -118664188 - MIR3 SINE MIR -1 207 151 271 295 49 0 chr11 30120246 30120307 -118663165 + L2 LINE L2 3201 3264 -8 478 214 31 0 chr11 30120310 30120408 -118663064 - Tigger3b DNA MER2_type -2 1229 1129 5627 140 96 19 chr11 30120489 30120747 -118662725 - Tigger3b DNA MER2_type -1860 1168 931 203 61 30 0 chr11 30120747 30120780 -118662692 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5627 140 96 19 chr11 30120780 30121603 -118661869 - Tigger3b DNA MER2_type -2097 931 3 246 273 91 32 chr11 30121773 30121927 -118661545 + L2 LINE L2 3149 3311 -2 203 279 106 19 chr11 30121944 30122048 -118661424 + MIR SINE MIR 134 246 -16 421 285 8 41 chr11 30122320 30122443 -118661029 - L2 LINE L2 -3 3269 3151 336 207 17 52 chr11 30123040 30123214 -118660258 + (TA)n Simple_repeat Simple_repeat 1 168 0 747 343 62 82 chr11 30123682 30124776 -118658696 + L2 LINE L2 1990 3078 -194 1633 135 81 4 chr11 30124776 30125059 -118658413 - AluSx SINE Alu 0 307 5 747 343 62 82 chr11 30125059 30125239 -118658233 + L2 LINE L2 3078 3260 -12 771 309 59 38 chr11 30125715 30126131 -118657341 + LTR33 LTR ERVL 12 519 -2 2264 122 34 3 chr11 30126179 30126531 -118656941 - THE1B LTR MaLR -1 363 1 1733 146 18 97 chr11 30126600 30126983 -118656489 - THE1B LTR MaLR -11 353 1 11389 105 4 1 chr11 30126983 30128558 -118654914 - THE1A-int LTR MaLR 0 1580 1 1785 149 8 67 chr11 30128560 30128935 -118654537 - THE1A LTR MaLR -2 353 1 3492 100 0 6 chr11 30129311 30129810 -118653662 - L1PA7 LINE L1 -3 6151 5656 2759 90 11 13 chr11 30129810 30130317 -118653155 + L1PA7 LINE L1 5147 5652 -502 195 312 34 34 chr11 30130493 30130621 -118652851 + L2 LINE L2 2852 2979 -334 201 281 0 12 chr11 30131250 30131332 -118652140 + CT-rich Low_complexity Low_complexity 2 82 0 197 337 11 103 chr11 30132084 30132259 -118651213 + MIR SINE MIR 43 201 -61 7413 104 2 5 chr11 30132983 30134025 -118649447 - L1PA5 LINE L1 -5095 1051 13 22161 51 6 12 chr11 30134027 30139009 -118644463 + L1PA5 LINE L1 1041 6150 -4 207 0 0 0 chr11 30139032 30139055 -118644417 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1574 279 70 7 chr11 30139073 30139507 -118643965 + MER45B DNA AcHobo 1 465 -575 1516 194 0 45 chr11 30139507 30139816 -118643656 - AluJb SINE Alu -16 296 2 186 167 0 0 chr11 30139829 30139865 -118643607 + CT-rich Low_complexity Low_complexity 5 40 0 5890 103 25 2 chr11 30139869 30140451 -118643021 - L1PA14 LINE L1 -1 6160 5593 1897 143 14 0 chr11 30140451 30140738 -118642734 - AluSx SINE Alu -18 294 4 5890 103 25 2 chr11 30140738 30142035 -118641437 - L1PA14 LINE L1 -568 5593 4285 776 211 53 13 chr11 30142049 30142347 -118641125 - L1MB1 LINE L1 -13 6155 5795 2269 189 53 24 chr11 30142347 30142891 -118640581 + MER45B DNA AcHobo 480 1039 -1 252 59 0 0 chr11 30144024 30144058 -118639414 + (ATG)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr11 30144575 30144610 -118638862 + AT_rich Low_complexity Low_complexity 1 35 0 752 318 92 35 chr11 30144824 30145280 -118638192 - L2 LINE L2 -5 3308 2827 439 351 32 20 chr11 30146724 30146972 -118636500 - HAL1 LINE L1 -2104 403 153 296 223 80 18 chr11 30147098 30147210 -118636262 + L1ME LINE L1 4532 4650 -1496 1358 189 73 0 chr11 30147393 30147679 -118635793 - Tigger2 DNA MER2_type -11 2707 2401 10991 149 56 39 chr11 30147788 30149540 -118633932 - Tigger2 DNA MER2_type -564 2154 358 1990 136 0 0 chr11 30149540 30149899 -118633573 - AluSg SINE Alu 0 359 1 10991 149 56 39 chr11 30149899 30150264 -118633208 - Tigger2 DNA MER2_type -2360 358 1 465 208 35 0 chr11 30150732 30150905 -118632567 + (TA)n Simple_repeat Simple_repeat 1 179 0 347 301 104 7 chr11 30150947 30151207 -118632265 + L1ME LINE L1 5374 5654 -510 290 301 68 0 chr11 30151214 30151317 -118632155 + MER112 DNA MER1_type 27 136 -124 1200 215 53 30 chr11 30151317 30151665 -118631807 + MLT1C LTR MaLR 1 331 -59 3097 298 81 21 chr11 30153130 30153645 -118629827 - L1MEc LINE L1 -4599 1797 1314 468 0 0 0 chr11 30153645 30153697 -118629775 + (CA)n Simple_repeat Simple_repeat 2 53 0 3097 298 81 21 chr11 30153697 30154791 -118628681 - L1MEc LINE L1 -5082 1314 92 266 333 58 7 chr11 30154976 30155114 -118628358 + MIR SINE MIR 91 235 -27 205 275 165 9 chr11 30155608 30155717 -118627755 - MIR SINE MIR -6 256 131 365 131 16 0 chr11 30155747 30155808 -118627664 + MADE1 DNA Mariner 16 77 -3 193 278 111 40 chr11 30155893 30156019 -118627453 - MIR SINE MIR -63 199 65 1463 202 26 60 chr11 30157570 30158048 -118625424 - MER39 LTR ERV1 0 707 1 241 393 73 10 chr11 30158096 30158302 -118625170 - MIR SINE MIR -32 230 12 312 337 51 0 chr11 30159992 30160090 -118623382 - MIR SINE MIR -123 139 37 283 415 37 0 chr11 30160128 30160292 -118623180 + L3 LINE CR1 1009 1178 -399 22 35 0 0 chr11 30160460 30160489 -118622983 + AT_rich Low_complexity Low_complexity 1 29 0 508 265 82 71 chr11 30161089 30161357 -118622115 - MLT1J2 LTR MaLR -120 330 60 374 330 138 25 chr11 30161469 30161672 -118621800 - L2 LINE L2 -214 3099 2874 263 295 38 0 chr11 30161945 30162050 -118621422 - L1MC/D LINE L1 -1936 5872 5764 419 323 78 18 chr11 30162097 30162314 -118621158 + L2 LINE L2 3081 3310 -3 2146 213 47 29 chr11 30162384 30162895 -118620577 - MLT2B1 LTR ERVL 0 520 1 750 259 80 5 chr11 30163067 30163268 -118620204 + MIR SINE MIR 46 261 -1 1699 182 3 0 chr11 30165143 30165440 -118618032 - AluJo SINE Alu -14 298 1 21 36 0 0 chr11 30165716 30165744 -118617728 + AT_rich Low_complexity Low_complexity 1 28 0 375 23 0 0 chr11 30165843 30165887 -118617585 + (TTA)n Simple_repeat Simple_repeat 3 46 0 3891 73 2 29 chr11 30165887 30166433 -118617039 - L1PA7 LINE L1 -18 6136 5606 781 62 0 0 chr11 30166433 30166529 -118616943 + L1PA7 LINE L1 5516 5611 -561 889 280 92 38 chr11 30166564 30167010 -118616462 - L1ME3A LINE L1 -6 6164 5695 2024 259 41 17 chr11 30167423 30168130 -118615342 - L1MC4a LINE L1 -205 7603 6880 24 0 0 0 chr11 30168426 30168450 -118615022 + AT_rich Low_complexity Low_complexity 1 24 0 910 171 20 20 chr11 30169955 30170154 -118613318 + L1MA10 LINE L1 4208 4406 -1740 3641 205 38 11 chr11 30170158 30171166 -118612306 + L1MA10 LINE L1 5127 6334 0 267 283 58 25 chr11 30171212 30171332 -118612140 + L1ME LINE L1 5513 5636 -485 1192 167 0 78 chr11 30171700 30172006 -118611466 + L1MA4 LINE L1 6003 6284 -16 416 261 46 23 chr11 30172323 30172453 -118611019 + L2 LINE L2 3180 3312 -1 5420 131 18 13 chr11 30172875 30174143 -118609329 + L1PA15 LINE L1 4882 6165 0 407 369 42 25 chr11 30174985 30175226 -118608246 - L2 LINE L2 -219 3053 2809 1268 164 84 0 chr11 30175226 30175452 -118608020 - Tigger5 DNA MER2_type 0 2323 2079 336 263 0 0 chr11 30175440 30175520 -118607952 - Tigger5 DNA MER2_type -2241 82 3 * 211 342 45 18 chr11 30175528 30175639 -118607833 - L2 LINE L2 -528 2786 2673 363 305 89 47 chr11 30176027 30176263 -118607209 - L2 LINE L2 -706 2608 2363 28 29 0 0 chr11 30176349 30176384 -118607088 + AT_rich Low_complexity Low_complexity 1 35 0 433 261 97 61 chr11 30176673 30176838 -118606634 - LTR16A LTR ERVL -71 379 209 251 271 178 28 chr11 30176866 30176973 -118606499 - LTR16A LTR ERVL -299 151 29 1231 184 0 93 chr11 30177249 30177592 -118605880 - AluY SINE Alu 0 311 1 22 0 0 0 chr11 30177592 30177614 -118605858 + AT_rich Low_complexity Low_complexity 1 22 0 2366 44 0 93 chr11 30178220 30178563 -118604909 - AluY SINE Alu 0 311 1 216 208 42 0 chr11 30179156 30179204 -118604268 + GA-rich Low_complexity Low_complexity 5 54 0 1858 161 18 0 chr11 30179602 30179931 -118603541 + L1PB4 LINE L1 5822 6156 0 568 351 22 30 chr11 30180253 30180657 -118602815 - MLT1K LTR MaLR 0 588 188 495 0 0 0 chr11 30181421 30181476 -118601996 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 30182057 30182078 -118601394 + AT_rich Low_complexity Low_complexity 1 21 0 404 357 115 50 chr11 30182403 30183131 -118600341 + L3 LINE CR1 230 1005 -572 306 359 16 26 chr11 30183500 30183692 -118599780 - MLT1K LTR MaLR -274 314 125 339 130 0 0 chr11 30183893 30183947 -118599525 + (A)n Simple_repeat Simple_repeat 1 54 0 265 336 44 48 chr11 30183964 30184214 -118599258 + L3 LINE CR1 1295 1543 -34 378 338 104 7 chr11 30184233 30184387 -118599085 + MIR SINE MIR 20 188 -74 185 348 0 11 chr11 30184762 30184854 -118598618 + MIR SINE MIR 172 262 0 277 198 272 0 chr11 30185688 30185769 -118597703 - L2 LINE L2 -1 3312 3210 21 0 0 0 chr11 30186286 30186307 -118597165 + AT_rich Low_complexity Low_complexity 1 21 0 183 61 30 30 chr11 30187168 30187201 -118596271 + MER5A DNA MER1_type 41 73 -116 207 236 36 0 chr11 30187373 30187428 -118596044 - MIR SINE MIR -64 144 88 25 31 0 0 chr11 30188340 30188372 -118595100 + AT_rich Low_complexity Low_complexity 1 32 0 1360 154 38 8 chr11 30188704 30188970 -118594502 - L1MA9 LINE L1 -38 6274 6001 189 74 0 0 chr11 30189101 30189128 -118594344 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2210 94 0 3 chr11 30189128 30189415 -118594057 - AluSq SINE Alu -27 286 1 519 325 36 16 chr11 30189468 30189717 -118593755 - L1ME LINE L1 -329 5792 5539 206 298 0 18 chr11 30189779 30189836 -118593636 + MIR SINE MIR 2 57 -205 22 0 0 0 chr11 30191979 30192001 -118591471 + AT_rich Low_complexity Low_complexity 1 22 0 2642 78 14 0 chr11 30192113 30192474 -118590998 + L1PA13 LINE L1 5791 6156 -7 24 85 0 0 chr11 30192559 30192618 -118590854 + AT_rich Low_complexity Low_complexity 1 59 0 238 261 0 0 chr11 30192778 30192824 -118590648 + polypyrimidine Low_complexity Low_complexity 1 46 0 349 202 0 19 chr11 30193053 30193157 -118590315 + (TA)n Simple_repeat Simple_repeat 1 102 0 363 294 134 53 chr11 30193391 30193785 -118589687 + L1ME4a LINE L1 5493 5918 -203 2140 151 48 38 chr11 30193896 30194435 -118589037 - MLT2A2 LTR ERVL 0 554 1 534 220 104 11 chr11 30194598 30194780 -118588692 - LTR37B LTR ERV1 -73 395 197 234 254 76 17 chr11 30194825 30194943 -118588529 - LTR37B LTR ERV1 -270 198 74 792 275 57 50 chr11 30195140 30195595 -118587877 - MLT1H1 LTR MaLR -46 509 5 958 281 74 5 chr11 30196941 30197318 -118586154 - L1MEc LINE L1 -4585 1811 1409 1020 251 169 31 chr11 30197318 30197351 -118586121 - MLT2B1 LTR ERVL -7 513 486 399 73 0 0 chr11 30197351 30197406 -118586066 + (TG)n Simple_repeat Simple_repeat 2 56 0 1020 251 169 31 chr11 30197406 30197823 -118585649 - MLT2B1 LTR ERVL -34 486 1 2342 293 107 23 chr11 30197832 30198869 -118584603 - L1MEc LINE L1 -4993 1403 240 4164 195 46 9 chr11 30198869 30199737 -118583735 - MER54A LTR ERVL 0 901 2 2342 293 107 23 chr11 30199737 30199958 -118583514 - L1MEc LINE L1 -6156 240 39 21 0 0 0 chr11 30199959 30199980 -118583492 + AT_rich Low_complexity Low_complexity 1 21 0 285 29 0 0 chr11 30200026 30200060 -118583412 + (TA)n Simple_repeat Simple_repeat 2 35 0 267 152 0 0 chr11 30200489 30200535 -118582937 + (TA)n Simple_repeat Simple_repeat 2 47 0 335 179 0 13 chr11 30201078 30201156 -118582316 + CT-rich Low_complexity Low_complexity 4 80 0 610 241 127 6 chr11 30201364 30201522 -118581950 - MER45A DNA AcHobo 0 178 2 228 86 0 0 chr11 30201793 30201828 -118581644 + (TC)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 30202927 30202950 -118580522 + AT_rich Low_complexity Low_complexity 1 23 0 431 229 80 96 chr11 30203632 30203820 -118579652 - L2 LINE L2 -3 3310 3126 3386 32 0 0 chr11 30203973 30204373 -118579099 - L1PA3 LINE L1 -1711 4435 4036 3238 32 0 5 chr11 30204370 30204772 -118578700 + L1PA3 LINE L1 4431 4830 -1316 * 7489 33 1 2 chr11 30204920 30206274 -118577198 + L1PA3 LINE L1 4803 6155 0 318 430 24 0 chr11 30206518 30206725 -118576747 + L1ME2 LINE L1 370 581 -6026 3708 193 27 60 chr11 30206959 30207808 -118575664 + L1MCa LINE L1 26 846 -5580 1663 202 39 40 chr11 30207836 30208626 -118574846 + L1MCa LINE L1 840 2699 -3727 * 1921 234 33 12 chr11 30208625 30209203 -118574269 + L1MCa LINE L1 3395 3984 -2442 980 265 134 46 chr11 30209259 30210226 -118573246 + L1ME2 LINE L1 1970 2960 -3466 2043 133 0 7 chr11 30210226 30210535 -118572937 + AluSx SINE Alu 2 308 -4 980 265 134 46 chr11 30210535 30210632 -118572840 + L1ME2 LINE L1 2960 3047 -3379 677 288 143 21 chr11 30210621 30211090 -118572382 + L1ME2 LINE L1 4050 4575 -1851 * 684 224 4 78 chr11 30211110 30211342 -118572130 - L1ME LINE L1 -350 5816 5602 2312 250 51 55 chr11 30211353 30211966 -118571506 + L1ME2 LINE L1 4949 5563 -881 3372 81 2 9 chr11 30211966 30212413 -118571059 - MLT2A1 LTR ERVL 0 444 1 2312 250 51 55 chr11 30212413 30213294 -118570178 + L1ME2 LINE L1 5563 6435 -9 1486 305 64 39 chr11 30213466 30214189 -118569283 - L2 LINE L2 -266 3047 2313 200 360 51 63 chr11 30214347 30214522 -118568950 - L3 LINE CR1 -4 1573 1401 2178 74 46 0 chr11 30214980 30215265 -118568207 - AluY SINE Alu -13 298 1 424 313 207 32 chr11 30216216 30216622 -118566850 + MLT1H LTR MaLR 73 549 0 27 0 0 0 chr11 30216988 30217015 -118566457 + AT_rich Low_complexity Low_complexity 1 27 0 2139 103 0 10 chr11 30217022 30217312 -118566160 - AluSx SINE Alu -25 287 1 381 255 215 7 chr11 30217473 30217622 -118565850 - MER5A DNA MER1_type 0 189 10 252 325 44 26 chr11 30218489 30218603 -118564869 + MIR SINE MIR 54 169 -93 221 288 15 0 chr11 30218663 30218729 -118564743 - L3 LINE CR1 -257 1320 1254 242 287 157 35 chr11 30218737 30218852 -118564620 - L2 LINE L2 0 3272 3144 440 298 112 27 chr11 30219006 30219194 -118564278 - MIR SINE MIR -36 226 23 1977 124 32 0 chr11 30221139 30221422 -118562050 - AluSx SINE Alu -14 298 7 24 0 0 0 chr11 30224069 30224093 -118559379 + AT_rich Low_complexity Low_complexity 1 24 0 312 294 123 57 chr11 30224293 30224504 -118558968 - MLT1K LTR MaLR -223 365 141 2393 162 52 0 chr11 30224567 30224974 -118558498 - MSTC LTR MaLR 0 428 1 23 0 0 0 chr11 30226204 30226227 -118557245 + AT_rich Low_complexity Low_complexity 1 23 0 264 336 25 0 chr11 30226615 30226734 -118556738 - MARNA DNA Mariner -17 569 448 313 195 98 12 chr11 30226898 30226980 -118556492 - MIR SINE MIR -87 175 87 619 248 84 36 chr11 30226982 30227297 -118556175 - MLT1H1 LTR MaLR 0 555 161 13526 143 21 36 chr11 30227473 30228530 -118554942 - Tigger1 DNA MER2_type 0 2418 1347 2068 98 7 0 chr11 30228530 30228828 -118554644 + AluSg SINE Alu 4 303 0 447 19 0 0 chr11 30228827 30228879 -118554593 + (TA)n Simple_repeat Simple_repeat 2 53 0 13526 143 21 36 chr11 30228828 30230275 -118553197 - Tigger1 DNA MER2_type -1071 1347 1 2126 96 4 0 chr11 30230468 30230772 -118552700 - AluY SINE Alu 0 305 1 2921 20 0 0 chr11 30230812 30231163 -118552309 - L1PA3 LINE L1 -847 5299 4949 7349 24 2 0 chr11 30231163 30232023 -118551449 + L1PA3 LINE L1 5289 6155 0 968 191 70 44 chr11 30232303 30232618 -118550854 + MER33 DNA MER1_type 1 323 -1 265 270 112 73 chr11 30233350 30233528 -118549944 - MLT1I LTR MaLR -127 282 98 24 77 0 0 chr11 30234444 30234496 -118548976 + AT_rich Low_complexity Low_complexity 1 52 0 624 201 84 29 chr11 30234612 30234902 -118548570 + MLT1A2 LTR MaLR 2 374 0 363 316 44 0 chr11 30235737 30235851 -118547621 + MER94 DNA DNA 1 119 -15 448 303 134 13 chr11 30236004 30236235 -118547237 + LTR33A LTR ERVL 4 262 -261 24 0 0 0 chr11 30236398 30236422 -118547050 + AT_rich Low_complexity Low_complexity 1 24 0 370 346 106 40 chr11 30236773 30237369 -118546103 - L1ME4a LINE L1 -197 5924 5290 21 36 0 0 chr11 30237485 30237513 -118545959 + AT_rich Low_complexity Low_complexity 1 28 0 512 242 70 0 chr11 30237551 30237679 -118545793 + MIR SINE MIR 70 206 -56 1708 132 169 18 chr11 30237711 30237964 -118545508 + THE1C LTR MaLR 1 316 -59 2156 63 0 60 chr11 30237964 30238298 -118545174 - AluY SINE Alu 0 316 1 1708 132 169 18 chr11 30238298 30238369 -118545103 + THE1C LTR MaLR 316 375 0 2482 67 0 6 chr11 30239173 30239486 -118543986 - AluY SINE Alu 0 311 1 469 331 46 36 chr11 30239862 30240143 -118543329 - L2 LINE L2 -442 2872 2589 1727 182 7 0 chr11 30240762 30241058 -118542414 + AluSx SINE Alu 1 298 -14 1098 244 71 83 chr11 30242149 30242571 -118540901 - MLT1F LTR MaLR -87 455 64 213 167 24 0 chr11 30242624 30242666 -118540806 + (TA)n Simple_repeat Simple_repeat 2 44 0 446 294 87 28 chr11 30243651 30243869 -118539603 + Charlie8 DNA MER1_type 1 231 -2186 1286 281 94 24 chr11 30245168 30245697 -118537775 + MLT1H1 LTR MaLR 1 555 0 225 0 0 0 chr11 30245712 30245737 -118537735 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 350 399 75 0 chr11 30245739 30245927 -118537545 + L3 LINE CR1 1293 1494 -83 23 0 0 0 chr11 30246052 30246075 -118537397 + AT_rich Low_complexity Low_complexity 1 23 0 592 324 50 8 chr11 30246133 30246371 -118537101 - MIR SINE MIR -4 258 11 230 242 16 0 chr11 30246470 30246532 -118536940 + (TG)n Simple_repeat Simple_repeat 2 64 0 231 279 15 0 chr11 30246719 30246787 -118536685 + CT-rich Low_complexity Low_complexity 2 70 0 271 303 171 13 chr11 30246843 30246995 -118536477 - MIR SINE MIR -73 189 14 211 391 65 5 chr11 30247044 30247228 -118536244 - L3b LINE CR1 -127 1456 1262 439 284 34 14 chr11 30247339 30247487 -118535985 + MIR SINE MIR 47 197 -65 466 322 22 33 chr11 30247524 30247704 -118535768 - MIR SINE MIR -48 214 37 244 258 113 0 chr11 30248045 30248142 -118535330 - MIR SINE MIR 0 262 155 235 289 174 41 chr11 30248606 30248727 -118534745 - MIR3 SINE MIR -52 156 20 453 283 50 85 chr11 30249796 30250079 -118533393 + HAL1 LINE L1 811 1083 -1424 2152 109 13 0 chr11 30250157 30250459 -118533013 + AluSq SINE Alu 1 306 -7 194 298 39 39 chr11 30250662 30250766 -118532706 - L2 LINE L2 -665 2649 2546 2441 50 0 0 chr11 30251574 30251873 -118531599 + L1PA3 LINE L1 5854 6152 -3 21 36 0 0 chr11 30251956 30251984 -118531488 + AT_rich Low_complexity Low_complexity 1 28 0 1215 161 87 29 chr11 30252024 30252266 -118531206 + AluJo SINE Alu 12 267 -45 507 289 51 71 chr11 30252266 30252429 -118531043 + L1MC/D LINE L1 3322 3487 -2659 3239 115 37 54 chr11 30252429 30253019 -118530453 + LTR19B LTR ERV1 1 580 0 507 289 51 71 chr11 30253019 30253517 -118529955 + L1MC/D LINE L1 3487 3970 -2176 200 351 0 0 chr11 30253517 30253591 -118529881 + MIR SINE MIR 156 229 -33 362 310 67 34 chr11 30253735 30254299 -118529173 + L1MC/D LINE L1 4080 4662 -1484 314 309 125 34 chr11 30254301 30254575 -118528897 + L1MC/D LINE L1 5450 5745 -530 2301 97 0 10 chr11 30254907 30255205 -118528267 + AluSq SINE Alu 1 295 -18 1668 182 0 35 chr11 30255783 30256102 -118527370 + AluJo SINE Alu 1 308 -4 356 284 91 72 chr11 30256124 30256388 -118527084 + HAL1 LINE L1 1374 1642 -865 292 319 52 30 chr11 30256655 30256790 -118526682 + L2 LINE L2 3176 3313 0 375 291 16 16 chr11 30257465 30257592 -118525880 + LTR16C LTR ERVL 353 479 -12 1541 181 8 8 chr11 30258002 30258267 -118525205 - AluJo SINE Alu -35 277 13 307 198 40 20 chr11 30258454 30258555 -118524917 + (TA)n Simple_repeat Simple_repeat 2 104 0 227 351 53 11 chr11 30260223 30260317 -118523155 + L2 LINE L2 2976 3073 -199 27 0 0 0 chr11 30260371 30260398 -118523074 + AT_rich Low_complexity Low_complexity 1 27 0 239 0 32 0 chr11 30261599 30261630 -118521842 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 379 303 67 55 chr11 30263045 30263210 -118520262 + MIR SINE MIR 6 172 -90 1589 162 40 15 chr11 30263395 30263723 -118519749 - MER44D DNA MER2_type -3 606 1 274 376 20 0 chr11 30263856 30263957 -118519515 - MIR SINE MIR -66 142 40 334 200 56 22 chr11 30264007 30264097 -118519375 - MLT1H LTR MaLR -2 547 455 357 229 146 73 chr11 30264174 30264379 -118519093 - MLT1H LTR MaLR -206 343 124 367 243 114 14 chr11 30264411 30264551 -118518921 + L1ME4a LINE L1 5968 6121 0 377 295 60 56 chr11 30264676 30264944 -118518528 + L2 LINE L2 2118 2386 -928 463 332 4 97 chr11 30265251 30265519 -118517953 + L2 LINE L2 2987 3229 -43 5454 179 35 26 chr11 30265657 30266470 -118517002 - L1PB3 LINE L1 -3 6151 5347 2346 106 15 3 chr11 30266470 30266810 -118516662 - L1PA10 LINE L1 -4 6164 5821 5454 179 35 26 chr11 30266810 30268147 -118515325 - L1PB3 LINE L1 -807 5347 3985 29 0 0 0 chr11 30268521 30268550 -118514922 + AT_rich Low_complexity Low_complexity 1 29 0 236 263 18 0 chr11 30269006 30269063 -118514409 - L2 LINE L2 0 3313 3256 203 264 75 0 chr11 30269140 30269193 -118514279 + MIR SINE MIR 203 259 -3 247 206 0 43 chr11 30269282 30269374 -118514098 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 21 36 0 0 chr11 30269880 30269908 -118513564 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 30270238 30270260 -118513212 + AT_rich Low_complexity Low_complexity 1 22 0 305 290 62 43 chr11 30270762 30270924 -118512548 - L2 LINE L2 0 3313 3149 252 345 105 66 chr11 30271297 30272144 -118511328 - L2 LINE L2 -744 2570 1691 251 303 20 10 chr11 30323259 30323358 -118460114 + LTR67 LTR ERVL 458 557 0 332 265 140 37 chr11 30324431 30324567 -118458905 - L2 LINE L2 -1 3312 3163 655 227 30 17 chr11 30324567 30324761 -118458711 - MSTB2 LTR MaLR 0 457 201 889 142 0 0 chr11 30324790 30324917 -118458555 + AluY SINE Alu 174 300 -11 247 116 93 0 chr11 30325033 30325076 -118458396 - MSTB2 LTR MaLR -410 47 1 385 345 47 30 chr11 30325076 30325308 -118458164 - L2 LINE L2 -146 3167 2932 1620 324 102 23 chr11 30325406 30326371 -118457101 - L2 LINE L2 -542 2772 1732 576 323 55 17 chr11 30326441 30326676 -118456796 - MIR SINE MIR -8 254 11 267 247 12 24 chr11 30326710 30326795 -118456677 - L2 LINE L2 -1633 1681 1598 2168 116 7 0 chr11 30327291 30327594 -118455878 - AluSq SINE Alu -6 307 3 255 227 13 27 chr11 30327612 30327687 -118455785 - MLT1-int LTR MaLR -1294 77 4 307 293 122 8 chr11 30327929 30328052 -118455420 - MLT1H LTR MaLR -401 148 12 281 401 12 66 chr11 30328169 30328593 -118454879 - L3 LINE CR1 -1 1576 1176 23 0 0 0 chr11 30329629 30329652 -118453820 + AT_rich Low_complexity Low_complexity 1 23 0 231 291 73 46 chr11 30330391 30330542 -118452930 + MIR SINE MIR 99 253 -9 183 80 0 0 chr11 30330602 30330627 -118452845 + (TG)n Simple_repeat Simple_repeat 2 26 0 1387 244 28 3 chr11 30330847 30331167 -118452305 + MLT1D LTR MaLR 178 505 0 2361 226 18 50 chr11 30331167 30331845 -118451627 + MLT1D-int LTR MaLR 1 656 -715 1707 221 11 160 chr11 30331903 30332008 -118451464 + MLT1D-int LTR MaLR 661 780 -591 2391 71 10 10 chr11 30332008 30332317 -118451155 + AluY SINE Alu 1 309 -2 1707 221 11 160 chr11 30332317 30333016 -118450456 + MLT1D-int LTR MaLR 780 1345 -26 2119 192 27 74 chr11 30333030 30333546 -118449926 + MLT1D LTR MaLR 1 492 -13 297 316 101 32 chr11 30333772 30333930 -118449542 + MIR SINE MIR 21 189 -73 760 219 158 5 chr11 30333962 30334158 -118449314 - MIR SINE MIR -30 232 7 1265 308 122 18 chr11 30335452 30336050 -118447422 - L2 LINE L2 -622 2692 2033 3236 149 23 21 chr11 30336233 30336756 -118446716 + MER1A DNA MER1_type 1 524 -3 23 0 0 0 chr11 30337022 30337045 -118446427 + AT_rich Low_complexity Low_complexity 1 23 0 451 293 81 60 chr11 30337780 30338063 -118445409 - LTR67 LTR ERVL -164 393 105 2095 108 0 0 chr11 30338528 30338805 -118444667 + AluSc SINE Alu 1 277 -32 1164 78 13 13 chr11 30338805 30339119 -118444353 + (GAAA)n Simple_repeat Simple_repeat 1 314 0 1189 252 78 5 chr11 30339644 30340017 -118443455 - L1ME2 LINE L1 0 6164 5765 493 279 120 13 chr11 30340221 30340379 -118443093 - MIR SINE MIR -69 193 19 402 353 68 14 chr11 30340764 30340985 -118442487 + MIR SINE MIR 20 252 -10 733 292 53 13 chr11 30341212 30341438 -118442034 + MIR SINE MIR 13 247 -15 574 287 90 37 chr11 30341820 30342012 -118441460 - L2 LINE L2 -2042 1272 1061 658 337 47 49 chr11 30342012 30342463 -118441009 - LTR16A LTR ERVL 0 450 1 574 287 90 37 chr11 30342463 30342538 -118440934 - L2 LINE L2 -2253 1061 991 243 322 144 0 chr11 30343823 30343941 -118439531 + MIR3 SINE MIR 12 146 -62 233 241 18 80 chr11 30344095 30344207 -118439265 - MIR SINE MIR -6 256 152 290 298 96 40 chr11 30345403 30345471 -118438001 - MIR SINE MIR -37 225 162 2216 111 3 0 chr11 30345471 30345768 -118437704 - AluSc SINE Alu -11 298 1 290 298 96 40 chr11 30345768 30345878 -118437594 - MIR SINE MIR -100 162 39 290 298 12 0 chr11 30346936 30347020 -118436452 + L2 LINE L2 3188 3272 0 1129 65 13 7 chr11 30348165 30348319 -118435153 - L1PA5 LINE L1 -4 6150 5996 180 388 19 10 chr11 30348693 30348796 -118434676 + L2 LINE L2 2231 2334 -980 260 379 42 27 chr11 30349235 30349758 -118433714 + L2 LINE L2 2527 3058 -214 21 0 0 0 chr11 30349966 30349987 -118433485 + AT_rich Low_complexity Low_complexity 1 21 0 390 319 52 52 chr11 30351270 30351480 -118431992 + MIR SINE MIR 48 257 -5 21 0 0 0 chr11 30352103 30352124 -118431348 + AT_rich Low_complexity Low_complexity 1 21 0 223 333 48 0 chr11 30352722 30352785 -118430687 - L2 LINE L2 -59 3213 3148 808 312 119 56 chr11 30353346 30354079 -118429393 - L2 LINE L2 0 3313 2518 662 342 101 47 chr11 30355091 30355705 -118427767 + L1M3d LINE L1 420 1066 -5237 207 0 0 0 chr11 30355933 30355956 -118427516 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2641 266 81 7 chr11 30356116 30357231 -118426241 + L1M4 LINE L1 827 1865 -4519 1367 207 66 18 chr11 30357307 30357655 -118425817 + MLT1A1 LTR MaLR 1 354 -11 1535 194 16 57 chr11 30357675 30358062 -118425410 + L1MA7 LINE L1 5911 6281 -10 22 0 0 0 chr11 30358297 30358319 -118425153 + AT_rich Low_complexity Low_complexity 1 22 0 342 276 103 33 chr11 30358943 30359186 -118424286 + L1M4 LINE L1 4111 4370 -2012 263 315 144 18 chr11 30360085 30360307 -118423165 - L2 LINE L2 -2588 726 477 324 332 45 64 chr11 30360976 30361178 -118422294 + L2 LINE L2 3075 3272 0 291 267 158 17 chr11 30361744 30361864 -118421608 - L2 LINE L2 0 3272 3136 573 285 50 11 chr11 30361907 30362086 -118421386 + MIR SINE MIR 77 262 0 298 299 142 8 chr11 30362279 30362406 -118421066 + MIR SINE MIR 105 248 -14 278 271 0 42 chr11 30362406 30362502 -118420970 + GA-rich Low_complexity Low_complexity 3 94 0 920 253 96 94 chr11 30362537 30363071 -118420401 - MLT1F LTR MaLR -3 539 5 738 269 92 21 chr11 30363103 30363341 -118420131 + MIR SINE MIR 8 262 0 2208 142 73 19 chr11 30363697 30364107 -118419365 + MSTB1 LTR MaLR 1 432 0 208 313 31 0 chr11 30364538 30364602 -118418870 - MIR3 SINE MIR -51 157 92 255 246 186 8 chr11 30364666 30364784 -118418688 - MIR SINE MIR -32 230 92 197 292 57 99 chr11 30364771 30364963 -118418509 - L2 LINE L2 0 3313 3130 * 196 326 20 20 chr11 30365127 30365225 -118418247 - L2 LINE L2 -341 2973 2876 249 33 0 0 chr11 30366144 30366174 -118417298 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 212 143 71 0 chr11 30366174 30366216 -118417256 - L2 LINE L2 -12 3260 3216 1871 153 29 40 chr11 30366860 30367239 -118416233 - THE1C LTR MaLR 0 375 1 2369 78 0 16 chr11 30368035 30368344 -118415128 - AluY SINE Alu -6 305 2 207 394 71 0 chr11 30368997 30369096 -118414376 + L2 LINE L2 3137 3242 -30 1809 207 40 42 chr11 30369436 30369939 -118413533 + MLT1D LTR MaLR 1 502 -3 182 375 0 23 chr11 30371820 30371908 -118411564 + MIR SINE MIR 53 138 -124 631 228 117 0 chr11 30373787 30373932 -118409540 - MLT1E LTR MaLR -431 162 1 24 91 0 0 chr11 30374192 30374258 -118409214 + AT_rich Low_complexity Low_complexity 1 66 0 211 261 14 43 chr11 30374902 30374971 -118408501 + MIR3 SINE MIR 121 187 -21 279 222 16 0 chr11 30376017 30376080 -118407392 - MER94 DNA DNA -69 65 2 877 233 28 60 chr11 30376417 30376666 -118406806 + MER102b DNA MER1_type 99 339 -2 284 350 133 51 chr11 30376720 30377365 -118406107 + L2 LINE L2 2031 2728 -586 313 298 79 102 chr11 30377548 30377813 -118405659 + L2 LINE L2 3014 3272 0 22 56 0 0 chr11 30377928 30377964 -118405508 + AT_rich Low_complexity Low_complexity 1 36 0 285 140 35 35 chr11 30378419 30378476 -118404996 - MIR SINE MIR -148 114 58 494 280 86 16 chr11 30379193 30379379 -118404093 + MIR SINE MIR 64 262 0 2124 134 125 2 chr11 30380264 30380640 -118402832 + MSTA LTR MaLR 1 428 0 408 279 123 19 chr11 30382284 30382438 -118401034 - L2 LINE L2 -10 3262 3093 248 250 0 0 chr11 30382673 30382725 -118400747 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 810 63 46 11 chr11 30382951 30383125 -118400347 + (TA)n Simple_repeat Simple_repeat 1 180 0 1819 200 46 10 chr11 30383810 30384468 -118399004 + L1M4c LINE L1 1675 2833 -3549 25393 146 21 12 chr11 30384473 30385694 -118397778 + L1PA8A LINE L1 2 1210 -5236 189 74 0 0 chr11 30385694 30385721 -118397751 + (CAA)n Simple_repeat Simple_repeat 1 27 0 25393 146 21 12 chr11 30385721 30390823 -118392649 + L1PA8A LINE L1 1210 6446 0 10103 205 24 13 chr11 30390807 30391648 -118391824 + L1PA16 LINE L1 2816 3646 -2756 * 1927 174 0 16 chr11 30391648 30391964 -118391508 + AluJb SINE Alu 1 311 -1 10103 205 24 13 chr11 30391964 30394648 -118388824 + L1PA16 LINE L1 3646 6384 -18 205 180 33 16 chr11 30394662 30394723 -118388749 + A-rich Low_complexity Low_complexity 3 64 0 185 179 0 18 chr11 30395265 30395321 -118388151 + (CA)n Simple_repeat Simple_repeat 2 56 0 1601 150 0 0 chr11 30395653 30395886 -118387586 + AluJb SINE Alu 1 233 -79 1895 162 39 43 chr11 30395886 30396246 -118387226 + THE1B LTR MaLR 1 360 -72 1185 66 0 0 chr11 30396246 30396398 -118387074 - L1PA5 LINE L1 -4 6150 5999 1895 162 39 43 chr11 30396398 30396459 -118387013 + THE1B LTR MaLR 360 420 -12 219 69 0 0 chr11 30396470 30396499 -118386973 + (TA)n Simple_repeat Simple_repeat 2 30 0 10432 136 16 1 chr11 30396499 30398056 -118385416 + THE1B-int LTR MaLR 1 1580 0 1936 149 27 49 chr11 30398056 30398425 -118385047 + THE1B LTR MaLR 3 364 0 414 164 14 0 chr11 30398425 30398498 -118384974 + AluJb SINE Alu 229 302 -10 22 0 0 0 chr11 30398799 30398821 -118384651 + AT_rich Low_complexity Low_complexity 1 22 0 1352 130 65 0 chr11 30399341 30399541 -118383931 - AluSx SINE Alu -99 213 1 340 344 55 12 chr11 30401113 30401276 -118382196 + L1MC4a LINE L1 3521 3690 -2456 2133 75 6 70 chr11 30401312 30401643 -118381829 + AluSg SINE Alu 1 310 0 229 250 0 0 chr11 30401649 30401709 -118381763 + L1P LINE L1 3739 3798 -2348 231 204 143 82 chr11 30402239 30402304 -118381168 - MER5C DNA MER1_type 0 324 250 1791 164 0 30 chr11 30402304 30402609 -118380863 - AluJb SINE Alu -16 296 1 231 204 143 82 chr11 30402609 30402641 -118380831 - MER5C DNA MER1_type -74 250 221 371 308 65 34 chr11 30402791 30403207 -118380265 + L1MC4a LINE L1 4519 4947 -1199 21 71 0 0 chr11 30403249 30403291 -118380181 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr11 30403464 30403490 -118379982 + AT_rich Low_complexity Low_complexity 1 26 0 659 312 85 20 chr11 30403503 30403997 -118379475 + L1MC4a LINE L1 5305 5830 -1978 * 1610 274 106 19 chr11 30403989 30404566 -118378906 + L1M3e LINE L1 466 1092 -6397 * 2382 266 43 45 chr11 30404564 30404956 -118378516 + L1M3e LINE L1 2018 2409 -5156 2267 118 0 6 chr11 30404956 30405270 -118378202 - AluSx SINE Alu 0 312 1 2382 266 43 45 chr11 30405270 30406652 -118376820 + L1M3e LINE L1 2409 3751 -3814 950 191 47 63 chr11 30406656 30406995 -118376477 - MSTD LTR MaLR -4 392 9 6216 244 28 47 chr11 30407002 30408624 -118374848 - MSTD-int LTR MaLR 0 1735 144 20790 143 42 12 chr11 30408625 30409186 -118374286 - L1 LINE L1 -3524 4041 3498 186 43 0 0 chr11 30409186 30409209 -118374263 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 20790 143 42 12 chr11 30409209 30412564 -118370908 - L1 LINE L1 -4067 3498 16 576 194 79 24 chr11 30412549 30412714 -118370758 - MSTD-int LTR MaLR -1560 175 2 * 1157 202 151 42 chr11 30412716 30413073 -118370399 - MSTD LTR MaLR 0 396 1 1639 253 69 21 chr11 30413074 30413636 -118369836 + L1M3e LINE L1 3748 4336 -3229 351 0 0 0 chr11 30415096 30415135 -118368337 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr11 30415699 30415721 -118367751 + AT_rich Low_complexity Low_complexity 1 22 0 266 170 6 2 chr11 30415889 30415963 -118367509 - MLT1H LTR MaLR -20 606 461 681 243 55 72 chr11 30416075 30416367 -118367105 - MLT1H LTR MaLR -251 298 12 2582 205 78 8 chr11 30416764 30417553 -118365919 + MER73 LTR ERVL 1 641 -3 699 273 28 0 chr11 30418153 30418329 -118365143 + MER117 DNA MER1_type 16 196 -1 201 39 0 0 chr11 30418361 30418387 -118365085 + (A)n Simple_repeat Simple_repeat 1 26 0 187 313 62 16 chr11 30418389 30418453 -118365019 - MIR SINE MIR -106 102 36 240 217 83 0 chr11 30418899 30418959 -118364513 + LTR67 LTR ERVL 491 555 -2 2271 83 3 61 chr11 30419247 30419574 -118363898 - AluSp SINE Alu -5 308 1 2081 104 3 17 chr11 30421777 30422096 -118361376 - AluSg SINE Alu 0 310 1 252 335 141 12 chr11 30422334 30422504 -118360968 + MIR SINE MIR 22 213 -49 249 300 31 31 chr11 30422689 30422819 -118360653 - L2 LINE L2 -2 3270 3141 742 250 54 73 chr11 30423152 30423412 -118360060 - MIR SINE MIR 0 262 8 301 260 8 8 chr11 30423675 30423802 -118359670 + CT-rich Low_complexity Low_complexity 2 128 0 2078 68 0 0 chr11 30424082 30424353 -118359119 + AluY SINE Alu 37 307 0 29 28 0 0 chr11 30424727 30424763 -118358709 + AT_rich Low_complexity Low_complexity 1 36 0 202 345 35 0 chr11 30425269 30425356 -118358116 - MIR SINE MIR -5 257 168 2452 80 0 0 chr11 30426130 30426441 -118357031 - AluY SINE Alu 0 311 1 2044 124 7 0 chr11 30426636 30426927 -118356545 + AluSx SINE Alu 1 293 -19 296 298 44 44 chr11 30427107 30427379 -118356093 + L1MC/D LINE L1 3877 4148 -1998 21 0 0 0 chr11 30427463 30427484 -118355988 + AT_rich Low_complexity Low_complexity 1 21 0 272 310 144 39 chr11 30427754 30428748 -118354724 + L1MC/D LINE L1 4557 5397 -749 361 333 48 29 chr11 30429352 30429643 -118353829 + L1MEc LINE L1 1355 1532 -5327 229 190 13 25 chr11 30429656 30429735 -118353737 + L1M3de LINE L1 1743 1820 -4833 636 236 46 36 chr11 30429778 30429973 -118353499 - L2 LINE L2 0 3313 3117 1666 284 104 20 chr11 30430148 30430744 -118352728 - L2 LINE L2 -514 2800 2155 23 86 0 0 chr11 30430894 30430952 -118352520 + AT_rich Low_complexity Low_complexity 1 58 0 1000 195 22 34 chr11 30431066 30431333 -118352139 + L1MC5 LINE L1 6976 7239 -722 2165 120 0 0 chr11 30431738 30432029 -118351443 + AluSx SINE Alu 1 291 -21 308 160 76 0 chr11 30432155 30432274 -118351198 + (TA)n Simple_repeat Simple_repeat 1 128 0 2153 145 105 13 chr11 30433357 30433749 -118349723 + MSTA LTR MaLR 1 428 0 560 300 144 11 chr11 30433888 30434158 -118349314 - L2 LINE L2 0 3313 3008 217 313 17 61 chr11 30439787 30439902 -118343570 + MIR SINE MIR 103 212 -50 22 56 0 0 chr11 30440035 30440071 -118343401 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr11 30440134 30440163 -118343309 + AT_rich Low_complexity Low_complexity 1 29 0 183 204 0 0 chr11 30440596 30440640 -118342832 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 289 409 120 12 chr11 30440641 30440900 -118342572 - L2 LINE L2 -19 3253 2967 254 313 21 31 chr11 30441021 30441117 -118342355 - MER5A DNA MER1_type -11 178 84 2458 81 7 0 chr11 30441193 30441502 -118341970 + AluSx SINE Alu 1 311 -1 412 327 34 92 chr11 30441999 30442326 -118341146 - L2 LINE L2 0 3272 2965 27 0 0 0 chr11 30443277 30443304 -118340168 + AT_rich Low_complexity Low_complexity 1 27 0 1969 196 65 11 chr11 30444269 30444712 -118338760 - MLT1C LTR MaLR 0 467 1 187 277 0 0 chr11 30444976 30445023 -118338449 - L2 LINE L2 -76 3237 3191 369 0 0 0 chr11 30445027 30445068 -118338404 + (CA)n Simple_repeat Simple_repeat 2 42 0 354 342 19 47 chr11 30445122 30445379 -118338093 - L2 LINE L2 -188 3084 2835 188 368 0 0 chr11 30445932 30446000 -118337472 + L2 LINE L2 3204 3271 -1 185 250 16 16 chr11 30448496 30448560 -118334912 - MIR SINE MIR -50 212 149 2586 174 41 85 chr11 30448571 30449233 -118334239 - LTR27 LTR ERV1 -1 635 3 1994 154 0 3 chr11 30449763 30450062 -118333410 - AluSx SINE Alu -14 298 1 21 0 0 0 chr11 30451662 30451683 -118331789 + AT_rich Low_complexity Low_complexity 1 21 0 440 332 81 36 chr11 30452494 30452741 -118330731 + MIR SINE MIR 5 262 0 182 309 18 0 chr11 30452765 30452820 -118330652 - MIR SINE MIR -110 152 97 493 268 21 21 chr11 30453931 30454073 -118329399 + MIR3 SINE MIR 62 203 -5 618 279 84 14 chr11 30454258 30454473 -118328999 + MIR SINE MIR 6 235 -27 269 358 7 29 chr11 30455131 30455268 -118328204 - L2 LINE L2 0 3313 3180 2353 167 43 17 chr11 30455370 30455960 -118327512 - MER39B LTR ERV1 0 653 10 552 305 79 0 chr11 30455973 30456150 -118327322 - L2 LINE L2 -250 3063 2873 1374 211 26 89 chr11 30456494 30456910 -118326562 + MLT1B LTR MaLR 1 390 0 568 0 28 0 chr11 30456914 30456986 -118326486 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 273 342 0 0 chr11 30457471 30457547 -118325925 - MIR SINE MIR -3 259 184 348 319 30 0 chr11 30457548 30457683 -118325789 - MIR SINE MIR 0 262 124 1662 183 7 7 chr11 30457685 30457969 -118325503 + AluJb SINE Alu 1 284 -28 23 33 0 0 chr11 30457969 30457999 -118325473 + AT_rich Low_complexity Low_complexity 1 30 0 451 327 12 36 chr11 30458159 30458324 -118325148 - MIR3 SINE MIR -10 198 38 296 265 127 0 chr11 30460470 30460593 -118322879 + MIR SINE MIR 49 191 -71 350 248 46 0 chr11 30460604 30460713 -118322759 + L1ME4a LINE L1 5691 5804 -317 414 224 134 0 chr11 30460780 30460914 -118322558 + L1ME4a LINE L1 5969 6120 -1 362 271 171 0 chr11 30461064 30461193 -118322279 + MIR SINE MIR 56 206 -56 33 0 0 0 chr11 30461193 30461226 -118322246 + AT_rich Low_complexity Low_complexity 1 33 0 241 161 36 0 chr11 30461227 30461283 -118322189 - L1MA2 LINE L1 -7 6297 6240 27 0 0 0 chr11 30461317 30461344 -118322128 + AT_rich Low_complexity Low_complexity 1 27 0 222 91 0 0 chr11 30461412 30461445 -118322027 + (TTG)n Simple_repeat Simple_repeat 2 34 0 467 298 21 11 chr11 30461457 30461648 -118321824 + LTR37B LTR ERV1 6 198 -270 408 245 0 0 chr11 30461694 30461796 -118321676 + LTR37B LTR ERV1 198 299 -169 237 108 0 0 chr11 30461805 30461842 -118321630 + (TC)n Simple_repeat Simple_repeat 2 38 0 532 216 7 7 chr11 30461869 30462008 -118321464 + LTR37B LTR ERV1 330 468 0 3339 203 82 75 chr11 30462396 30463801 -118319671 + Charlie1a DNA MER1_type 7 1421 -34 214 266 16 16 chr11 30465114 30465178 -118318294 + MIR SINE MIR 196 259 -3 1323 189 19 19 chr11 30465883 30466142 -118317330 - AluJo SINE Alu -20 292 34 234 395 38 58 chr11 30466207 30466551 -118316921 + L2 LINE L2 2936 3272 0 183 382 49 10 chr11 30466893 30466995 -118316477 + MIR SINE MIR 89 194 -68 1324 297 109 20 chr11 30467020 30467724 -118315748 + L2 LINE L2 2381 3145 -168 529 253 163 44 chr11 30467749 30468069 -118315403 + MLT1I LTR MaLR 44 401 -8 604 289 6 25 chr11 30468090 30468249 -118315223 + L2 LINE L2 3158 3313 0 206 315 34 22 chr11 30468347 30468436 -118315036 - MIR SINE MIR -101 161 72 319 335 30 36 chr11 30468810 30468977 -118314495 + MIR SINE MIR 47 212 -50 443 284 97 17 chr11 30469179 30469355 -118314117 + MIR SINE MIR 3 192 -70 216 216 0 20 chr11 30469694 30469745 -118313727 + MIR SINE MIR 210 259 -3 242 271 0 17 chr11 30470268 30470327 -118313145 - MIR SINE MIR -6 256 199 33 25 0 0 chr11 30470670 30470710 -118312762 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr11 30471492 30471523 -118311949 + AT_rich Low_complexity Low_complexity 1 31 0 213 265 124 19 chr11 30471873 30471976 -118311496 + MIR SINE MIR 55 177 -31 2566 253 118 55 chr11 30472805 30474055 -118309417 + L2 LINE L2 1928 3313 0 738 210 0 0 chr11 30475179 30475303 -118308169 + FLAM_A SINE Alu 1 124 -9 512 252 7 0 chr11 30476121 30476256 -118307216 - MIR3 SINE MIR -8 200 65 325 313 121 16 chr11 30477030 30477212 -118306260 - MIR SINE MIR -26 236 36 216 267 95 57 chr11 30477363 30477468 -118306004 - L2 LINE L2 -5 3308 3200 331 313 33 27 chr11 30477723 30477873 -118305599 - MIR SINE MIR -92 170 20 2037 134 0 3 chr11 30479153 30479445 -118304027 + AluSx SINE Alu 1 291 -21 235 429 0 0 chr11 30479903 30480008 -118303464 - L3 LINE CR1 -1278 299 195 304 261 0 11 chr11 30480560 30480648 -118302824 + GA-rich Low_complexity Low_complexity 1 87 0 444 306 81 86 chr11 30481390 30481811 -118301661 + L2 LINE L2 2827 3245 -27 365 267 87 7 chr11 30482613 30482685 -118300787 + MIR SINE MIR 83 148 -114 507 90 26 0 chr11 30482685 30482763 -118300709 - MADE1 DNA Mariner 0 80 1 365 267 87 7 chr11 30482763 30482840 -118300632 + MIR SINE MIR 148 244 -18 1327 102 14 19 chr11 30483320 30483535 -118299937 - Tigger1 DNA MER2_type 0 2418 2205 739 132 0 105 chr11 30483560 30483712 -118299760 - Tigger1 DNA MER2_type -2282 136 1 2303 104 0 7 chr11 30483809 30484108 -118299364 + AluSq SINE Alu 2 298 -15 1478 139 0 5 chr11 30484258 30484473 -118298999 - AluSq SINE Alu -63 250 37 212 279 139 13 chr11 30484969 30485048 -118298424 - MIR SINE MIR -2 260 172 1978 194 50 11 chr11 30485055 30485415 -118298057 + L1MB1 LINE L1 5687 6070 -98 1977 148 14 38 chr11 30485415 30485759 -118297713 - MER1B DNA MER1_type 0 337 2 1978 194 50 11 chr11 30485759 30485862 -118297610 + L1MB1 LINE L1 6070 6168 0 1856 161 0 7 chr11 30485887 30486178 -118297294 - AluSx SINE Alu -23 289 1 202 375 0 14 chr11 30486198 30486270 -118297202 - MIR SINE MIR -186 76 6 182 191 95 0 chr11 30486527 30486569 -118296903 - L2 LINE L2 -3 3310 3265 186 43 0 0 chr11 30487019 30487042 -118296430 + (A)n Simple_repeat Simple_repeat 1 23 0 2339 105 0 0 chr11 30487086 30487390 -118296082 + AluSx SINE Alu 1 304 -8 336 317 61 18 chr11 30488177 30488341 -118295131 + LTR16C LTR ERVL 98 268 -223 260 29 57 0 chr11 30489174 30489209 -118294263 - MLT2B2 LTR ERVL 0 520 484 279 0 0 0 chr11 30489220 30489251 -118294221 + (TG)n Simple_repeat Simple_repeat 2 32 0 227 200 0 17 chr11 30489254 30489314 -118294158 + (TA)n Simple_repeat Simple_repeat 1 59 0 13237 146 33 9 chr11 30489466 30490165 -118293307 + Tigger2 DNA MER2_type 357 1037 -1681 2419 71 0 0 chr11 30490165 30490460 -118293012 + AluY SINE Alu 3 297 -14 13237 146 33 9 chr11 30490460 30492063 -118291409 + Tigger2 DNA MER2_type 1037 2716 -2 1777 182 102 45 chr11 30492079 30492297 -118291175 - MLT2B2 LTR ERVL -50 465 261 240 35 0 0 chr11 30492297 30492326 -118291146 + (GA)n Simple_repeat Simple_repeat 2 30 0 1777 182 102 45 chr11 30492326 30492547 -118290925 - MLT2B2 LTR ERVL -254 261 1 181 238 307 0 chr11 30493316 30493417 -118290055 - MIR SINE MIR -94 168 37 248 311 0 27 chr11 30493733 30493807 -118289665 + L2 LINE L2 3242 3313 0 359 288 165 0 chr11 30495365 30495536 -118287936 + MIR SINE MIR 4 203 -59 739 176 38 19 chr11 30496005 30496164 -118287308 + MER5A DNA MER1_type 28 189 0 439 265 129 14 chr11 30496173 30496320 -118287152 - MIR SINE MIR -77 185 22 189 352 44 0 chr11 30496425 30496535 -118286937 + MIR SINE MIR 21 137 -71 204 129 0 0 chr11 30497174 30497205 -118286267 + MIR SINE MIR 119 149 -113 284 211 14 14 chr11 30497258 30497329 -118286143 + MER117 DNA MER1_type 22 92 -105 264 321 43 21 chr11 30497748 30497888 -118285584 + MIR SINE MIR 120 262 0 374 365 114 5 chr11 30500384 30500603 -118282869 - MIR SINE MIR -14 248 6 272 303 79 40 chr11 30502463 30502615 -118280857 + MIR3 SINE MIR 47 204 -4 21 57 0 0 chr11 30503324 30503359 -118280113 + AT_rich Low_complexity Low_complexity 1 35 0 734 275 75 10 chr11 30503410 30503610 -118279862 + MIR SINE MIR 42 254 -8 495 301 53 34 chr11 30503618 30504072 -118279400 - L1MC/D LINE L1 -332 5789 5305 220 305 17 17 chr11 30504245 30504304 -118279168 + L2 LINE L2 3245 3303 -10 423 0 0 0 chr11 30504371 30504418 -118279054 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 366 290 57 48 chr11 30506078 30506202 -118277270 + L2 LINE L2 3139 3263 -9 284 399 65 36 chr11 30506537 30506813 -118276659 - L2 LINE L2 0 3272 2989 22 0 0 0 chr11 30506823 30506845 -118276627 + AT_rich Low_complexity Low_complexity 1 22 0 375 353 0 0 chr11 30508323 30508445 -118275027 + MIR3 SINE MIR 33 154 -54 330 238 9 9 chr11 30508466 30508571 -118274901 - LTR67 LTR ERVL -25 532 428 273 277 31 17 chr11 30509049 30509153 -118274319 - MER5A DNA MER1_type -76 113 2 387 0 0 0 chr11 30509181 30509224 -118274248 + (CA)n Simple_repeat Simple_repeat 2 44 0 245 315 142 24 chr11 30510029 30510156 -118273316 + MIR SINE MIR 55 196 -66 194 103 0 26 chr11 30510203 30510242 -118273230 + (TTA)n Simple_repeat Simple_repeat 2 39 0 213 347 27 0 chr11 30510529 30510604 -118272868 - MIR3 SINE MIR -33 175 99 476 267 48 14 chr11 30510757 30510903 -118272569 - L2 LINE L2 -1 3312 3162 368 249 162 27 chr11 30511650 30511835 -118271637 + MIR SINE MIR 43 252 -10 1587 234 45 92 chr11 30512171 30512726 -118270746 - MER77 LTR ERV1 -8 597 69 212 277 0 0 chr11 30513138 30513185 -118270287 - L2 LINE L2 0 3313 3267 410 352 90 20 chr11 30513642 30513997 -118269475 - L2 LINE L2 -586 2728 2349 617 274 157 43 chr11 30514762 30515087 -118268385 + LTR33 LTR ERVL 1 362 -159 856 287 35 4 chr11 30515354 30515608 -118267864 - MIR SINE MIR 0 262 1 461 283 122 27 chr11 30515928 30516370 -118267102 + L1ME4a LINE L1 5565 6048 -73 209 324 73 59 chr11 30516761 30516897 -118266575 + MIR SINE MIR 55 192 -70 527 283 7 28 chr11 30516976 30517121 -118266351 + MIR3 SINE MIR 67 208 0 318 146 11 45 chr11 30517847 30517936 -118265536 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 335 42 12 chr11 30517978 30518101 -118265371 - MIR3 SINE MIR -51 157 59 181 338 15 0 chr11 30518830 30518898 -118264574 + L2 LINE L2 3204 3272 0 320 0 25 0 chr11 30519245 30519285 -118264187 + (GA)n Simple_repeat Simple_repeat 1 41 0 263 324 108 7 chr11 30519317 30519456 -118264016 + MLT1K LTR MaLR 422 574 -14 1666 167 18 7 chr11 30519630 30519911 -118263561 - AluJb SINE Alu 0 312 29 360 314 82 36 chr11 30520067 30520261 -118263211 + MIR SINE MIR 4 206 -56 229 208 57 0 chr11 30520315 30520368 -118263104 - L2 LINE L2 0 3272 3217 859 275 168 28 chr11 30520955 30521282 -118262190 - L2 LINE L2 -100 3213 2841 313 300 87 60 chr11 30521304 30521454 -118262018 + L2 LINE L2 3117 3270 -2 281 286 102 20 chr11 30522027 30522125 -118261347 - MIR3 SINE MIR -90 118 13 341 185 0 12 chr11 30524029 30524110 -118259362 + GA-rich Low_complexity Low_complexity 3 82 0 403 253 54 76 chr11 30524111 30524345 -118259127 + L1 LINE L1 2810 3042 -3104 21 36 0 0 chr11 30524362 30524390 -118259082 + AT_rich Low_complexity Low_complexity 1 28 0 330 239 42 2 chr11 30524400 30524517 -118258955 + L1 LINE L1 3856 3976 -2170 389 361 101 15 chr11 30524524 30525000 -118258472 + L1 LINE L1 4023 4539 -1607 1579 201 10 13 chr11 30525608 30525916 -118257556 - AluJo SINE Alu -5 307 1 367 310 41 55 chr11 30526090 30526361 -118257111 + MLT1J LTR MaLR 241 507 -4 211 321 38 0 chr11 30526386 30526439 -118257033 - L2 LINE L2 -78 3194 3140 198 191 0 0 chr11 30526580 30526627 -118256845 + (TATG)n Simple_repeat Simple_repeat 3 49 0 582 250 5 88 chr11 30528268 30528460 -118255012 - MER5B DNA MER1_type -2 176 1 31682 99 18 8 chr11 30528658 30534435 -118249037 - L1PA7 LINE L1 0 6469 648 10637 29 0 0 chr11 30534434 30535693 -118247779 - L1P LINE L1 -1031 5115 3857 * 1655 25 0 0 chr11 30535690 30535886 -118247586 + L1P LINE L1 5085 5280 -866 * 3816 123 30 14 chr11 30587056 30587647 -118195825 + LTR36 LTR ERV1 11 611 0 291 244 35 78 chr11 30587648 30587763 -118195709 + MIR SINE MIR 153 262 0 195 100 0 0 chr11 30587777 30587807 -118195665 + (TG)n Simple_repeat Simple_repeat 2 31 0 1210 157 113 8 chr11 30587838 30588006 -118195466 - MLT1A1 LTR MaLR -15 350 146 425 19 19 0 chr11 30588006 30588060 -118195412 + (GA)n Simple_repeat Simple_repeat 2 56 0 1210 157 113 8 chr11 30588060 30588139 -118195333 - MLT1A1 LTR MaLR -219 146 77 22 0 0 0 chr11 30588526 30588548 -118194924 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr11 30589086 30589114 -118194358 + (TG)n Simple_repeat Simple_repeat 1 28 0 1422 214 7 14 chr11 30589114 30589395 -118194077 - AluJb SINE Alu -33 279 1 4114 32 8 0 chr11 30590094 30590591 -118192881 - L1PA3 LINE L1 0 6155 5655 290 239 30 0 chr11 30590693 30590728 -118192744 + MIR3 SINE MIR 127 159 -49 1051 219 5 22 chr11 30590728 30590952 -118192520 - MER58A DNA MER1_type -2 222 3 290 239 30 0 chr11 30590952 30590983 -118192489 + MIR3 SINE MIR 159 195 -13 487 219 42 17 chr11 30591719 30591838 -118191634 - MER20 DNA MER1_type 0 219 98 3629 24 2 17 chr11 30591962 30592377 -118191095 + SVA Other Other 978 1386 0 2375 148 29 19 chr11 30593746 30594166 -118189306 + MSTB LTR MaLR 1 424 -2 1206 227 24 34 chr11 30594175 30594614 -118188858 + MSTB-int LTR MaLR 15 448 -1287 255 152 0 0 chr11 30595428 30595474 -118187998 + (TG)n Simple_repeat Simple_repeat 1 46 0 715 182 57 0 chr11 30595530 30595689 -118187783 - L1MB2 LINE L1 -15 6156 5989 189 336 92 23 chr11 30595693 30595824 -118187648 - MIR SINE MIR -60 202 63 2595 49 3 0 chr11 30596936 30597244 -118186228 + AluY SINE Alu 3 311 0 4177 67 2 6 chr11 30597537 30598077 -118185395 + L1PA7 LINE L1 5604 6141 -13 734 302 88 0 chr11 30598106 30598391 -118185081 + L2 LINE L2 3004 3313 0 21 0 0 0 chr11 30599015 30599036 -118184436 + AT_rich Low_complexity Low_complexity 1 21 0 1716 107 0 4 chr11 30599476 30599701 -118183771 - AluY SINE Alu -49 262 39 4691 209 31 72 chr11 30599701 30600269 -118183203 - L1M2 LINE L1 -3957 2372 1782 1406 191 27 53 chr11 30600269 30600568 -118182904 - AluJo SINE Alu -19 293 3 4691 209 31 72 chr11 30600568 30601783 -118181689 - L1M2 LINE L1 -4547 1782 351 2370 203 20 34 chr11 30601902 30602315 -118181157 - L1 LINE L1 -2970 3176 2773 2510 62 0 0 chr11 30602315 30602620 -118180852 - AluY SINE Alu -6 305 1 2370 203 20 34 chr11 30602620 30602817 -118180655 - L1 LINE L1 -3373 2773 2575 208 156 0 22 chr11 30604764 30604809 -118178663 + L2 LINE L2 3270 3313 0 997 139 30 0 chr11 30604985 30605151 -118178321 + L1PA13 LINE L1 5989 6159 -4 5482 125 8 1 chr11 30605161 30606003 -118177469 + L1PA15 LINE L1 5318 6165 0 540 173 9 27 chr11 30606003 30606113 -118177359 + L1M3f LINE L1 90 197 -5131 282 222 25 25 chr11 30607103 30607184 -118176288 - MIR SINE MIR 0 262 182 1978 163 34 0 chr11 30607204 30607529 -118175943 + MER7A DNA MER2_type 1 334 -12 4749 202 28 8 chr11 30607630 30608809 -118174663 - L1 LINE L1 -2763 3383 2182 701 88 0 0 chr11 30608810 30608901 -118174571 - AluY SINE Alu -13 298 208 373 233 12 0 chr11 30609298 30609384 -118174088 + MLT1I LTR MaLR 323 409 0 234 316 84 39 chr11 30609961 30610116 -118173356 + L2 LINE L2 2383 2544 -770 275 135 135 0 chr11 30610276 30610328 -118173144 + LTR18B LTR ERVL 530 588 -26 490 235 0 0 chr11 30611352 30611454 -118172018 + L2 LINE L2 2501 2602 -712 625 283 161 18 chr11 30611523 30611852 -118171620 + L2 LINE L2 2890 3265 -48 2467 67 29 0 chr11 30612073 30612417 -118171055 - L1P LINE L1 -2452 3694 3341 238 290 0 0 chr11 30612549 30612611 -118170861 + L2 LINE L2 3204 3265 -7 2603 10 3 0 chr11 30613684 30613976 -118169496 - AluYb8 SINE Alu -25 293 1 244 275 194 31 chr11 30614249 30614409 -118169063 + L2 LINE L2 2304 2489 -825 308 287 54 39 chr11 30615181 30615310 -118168162 - L2 LINE L2 -4 3268 3138 2477 76 3 10 chr11 30617045 30617359 -118166113 + AluSx SINE Alu 1 312 0 261 296 26 78 chr11 30617370 30617485 -118165987 + MER5A DNA MER1_type 12 120 -69 480 187 88 0 chr11 30618010 30618101 -118165371 - L2 LINE L2 -5 3308 3210 228 111 0 0 chr11 30618119 30618155 -118165317 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 225 0 0 0 chr11 30618771 30618796 -118164676 + (A)n Simple_repeat Simple_repeat 1 25 0 475 285 96 22 chr11 30620404 30620674 -118162798 + HERVL LTR ERVL 2244 2533 -3231 481 287 8 8 chr11 30621343 30621465 -118162007 + L2 LINE L2 3187 3308 -5 269 201 176 31 chr11 30622665 30622824 -118160648 + L1ME4a LINE L1 5939 6120 -1 6373 21 9 3 chr11 30623481 30624226 -118159246 - L1PA3 LINE L1 0 6155 5406 28 29 0 0 chr11 30624511 30624546 -118158926 + AT_rich Low_complexity Low_complexity 1 35 0 282 324 71 40 chr11 30624597 30624822 -118158650 + LTR16A LTR ERVL 210 441 -9 304 371 46 19 chr11 30624862 30625121 -118158351 - L2 LINE L2 -1 3312 3047 3804 164 22 47 chr11 30625142 30625972 -118157500 - L1PA16 LINE L1 -1 6165 5357 2122 126 3 3 chr11 30625980 30626282 -118157190 - AluSg SINE Alu 0 310 9 1629 98 4 0 chr11 30626421 30626666 -118156806 - L1PA16 LINE L1 -1412 4734 4489 * 2422 64 19 2 chr11 30626665 30627163 -118156309 + L1P3 LINE L1 5027 5530 -624 9187 57 6 1 chr11 30627231 30629161 -118154311 - L1PA5 LINE L1 0 6154 4200 337 339 55 27 chr11 30629297 30629589 -118153883 + HERVL LTR ERVL 4741 5040 -614 2483 78 0 0 chr11 30629916 30630224 -118153248 - AluY SINE Alu -3 308 1 341 256 25 16 chr11 30630346 30630467 -118153005 + LTR67 LTR ERVL 436 557 0 469 310 101 10 chr11 30630469 30630687 -118152785 + MIR SINE MIR 10 249 -13 296 294 63 16 chr11 30630990 30631116 -118152356 - MIR SINE MIR -7 255 124 331 294 127 0 chr11 30631122 30631248 -118152224 + L2 LINE L2 3171 3312 -1 811 246 132 60 chr11 30631487 30631966 -118151506 - MLT1H1 LTR MaLR -34 521 9 8866 109 14 2 chr11 30632633 30633965 -118149507 - THE1B-int LTR MaLR -231 1349 2 2167 127 19 32 chr11 30633966 30634335 -118149137 - THE1B LTR MaLR 0 364 1 30 52 0 39 chr11 30636878 30636955 -118146517 + AT_rich Low_complexity Low_complexity 1 74 0 912 199 140 8 chr11 30637341 30637577 -118145895 - MLT1C LTR MaLR -1 466 200 337 205 13 0 chr11 30637796 30637874 -118145598 + L1 LINE L1 3606 3684 -2462 31750 42 34 2 chr11 30637874 30642056 -118141416 + L1P LINE L1 1 4317 -1829 515 68 0 0 chr11 30642156 30642230 -118141242 + L1PA2 LINE L1 6078 6151 -4 4734 134 17 1 chr11 30643187 30643965 -118139507 + L1PA16 LINE L1 5375 6164 -2 280 288 83 45 chr11 30644102 30644234 -118139238 - L2 LINE L2 -5 3308 3172 1177 200 17 30 chr11 30644474 30644830 -118138642 - MLT1E3 LTR MaLR 0 624 215 512 355 105 4 chr11 30645232 30645460 -118138012 - MIR SINE MIR -11 251 1 412 318 43 27 chr11 30645542 30645745 -118137727 - MIR SINE MIR -34 174 17 691 286 47 82 chr11 30646500 30646905 -118136567 - L2 LINE L2 -2 3311 2921 249 281 35 0 chr11 30647116 30647173 -118136299 - L2 LINE L2 -2 3270 3212 1906 161 35 35 chr11 30647175 30647731 -118135741 - MLT2A2 LTR ERVL 0 554 1 407 326 20 0 chr11 30647788 30647935 -118135537 - MER117 DNA MER1_type -1 196 47 462 252 187 48 chr11 30647957 30648187 -118135285 + MLT1H LTR MaLR 286 547 -2 544 252 75 37 chr11 30649574 30649788 -118133684 + MLT1H LTR MaLR 215 436 -113 2466 115 11 19 chr11 30650120 30650494 -118132978 - THE1C LTR MaLR -4 371 1 672 321 4 53 chr11 30650890 30651155 -118132317 - MIR SINE MIR -8 254 3 181 217 145 58 chr11 30651175 30651244 -118132228 + L2 LINE L2 3239 3313 0 197 33 33 0 chr11 30651326 30651356 -118132116 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 285 258 40 48 chr11 30651745 30651869 -118131603 - MIR SINE MIR -13 249 127 1684 137 33 22 chr11 30652143 30652414 -118131058 + AluSx SINE Alu 30 303 -9 192 224 41 20 chr11 30653032 30653081 -118130391 + L3 LINE CR1 1524 1573 -4 209 278 143 16 chr11 30653689 30653815 -118129657 + MIR3 SINE MIR 31 172 -36 303 242 56 0 chr11 30655335 30655496 -118127976 + (TA)n Simple_repeat Simple_repeat 2 171 0 237 360 147 0 chr11 30656563 30656699 -118126773 - L2 LINE L2 0 3272 3117 868 241 44 31 chr11 30658859 30659087 -118124385 - MIR SINE MIR 0 262 32 1016 167 18 27 chr11 30659093 30659315 -118124157 + L1MA9 LINE L1 6076 6295 -17 348 356 12 19 chr11 30660301 30660461 -118123011 - MIR3 SINE MIR -9 199 41 227 305 148 45 chr11 30660706 30660929 -118122543 + L2 LINE L2 3046 3291 -22 921 142 98 16 chr11 30662653 30662836 -118120636 + MER20 DNA MER1_type 1 198 -21 791 334 89 5 chr11 30662958 30663395 -118120077 - L2 LINE L2 -862 2452 1979 348 302 126 6 chr11 30663784 30663966 -118119506 - L1ME LINE L1 -312 5809 5606 207 0 0 0 chr11 30664055 30664078 -118119394 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5893 111 18 0 chr11 30664096 30665287 -118118185 - L1PA10 LINE L1 -14 6154 4950 6849 120 31 39 chr11 30665287 30665840 -118117632 + L1P LINE L1 3711 4267 -1879 539 56 0 0 chr11 30665840 30665911 -118117561 - L1PA5 LINE L1 -2 6152 6082 6849 120 31 39 chr11 30665911 30666539 -118116933 + L1P LINE L1 4267 4883 -1263 381 248 19 9 chr11 30666788 30666893 -118116579 + MER103 DNA DNA 59 164 -2 200 341 65 49 chr11 30667225 30667348 -118116124 + MIR SINE MIR 20 144 -64 * 207 233 0 0 chr11 30667324 30667367 -118116105 + L2 LINE L2 3228 3270 -2 2083 171 0 9 chr11 30667753 30668103 -118115369 + MLT1A1 LTR MaLR 1 347 -18 352 320 78 0 chr11 30669016 30669144 -118114328 - MIR SINE MIR -80 182 45 571 197 0 66 chr11 30669160 30669297 -118114175 + MER21B LTR ERV1 678 805 -58 234 312 78 0 chr11 30669324 30669401 -118114071 - L2 LINE L2 -242 3030 2948 1710 147 17 10 chr11 30669420 30669713 -118113759 + L1PB4 LINE L1 5848 6142 -14 36 40 0 0 chr11 30669731 30669781 -118113691 + AT_rich Low_complexity Low_complexity 1 50 0 185 211 0 0 chr11 30671654 30671692 -118111780 + L2 LINE L2 3272 3309 -4 22 56 0 0 chr11 30672072 30672108 -118111364 + AT_rich Low_complexity Low_complexity 1 36 0 1557 100 0 0 chr11 30672510 30672730 -118110742 - L1P LINE L1 -1103 5043 4824 4397 179 8 4 chr11 30672870 30673799 -118109673 - L1P4 LINE L1 -702 5466 4534 497 159 18 106 chr11 30673800 30673913 -118109559 - L1M3f LINE L1 -5225 103 1 8634 221 52 21 chr11 30674031 30676719 -118106753 + L1MB2 LINE L1 2092 4852 -1530 4486 47 0 0 chr11 30676719 30677274 -118106198 - L1PA4 LINE L1 0 6155 5601 * 7521 29 6 56 chr11 30677270 30678879 -118104593 - L1PA3 LINE L1 -1 6154 4589 11631 36 1 0 chr11 30678980 30680392 -118103080 - L1PA4 LINE L1 -843 5303 3891 5758 43 3 0 chr11 30680391 30681113 -118102359 + L1P LINE L1 4667 5390 -756 * 2909 181 77 25 chr11 30681113 30682258 -118101214 + L1MB2 LINE L1 4843 6065 -342 1996 237 68 18 chr11 30682258 30682756 -118100716 - MLT1F LTR MaLR -18 524 2 219 114 0 0 chr11 30682869 30682904 -118100568 + (TG)n Simple_repeat Simple_repeat 2 36 0 1249 148 0 6 chr11 30683300 30683482 -118099990 + AluJb SINE Alu 109 289 -23 909 260 74 7 chr11 30683493 30683789 -118099683 + L1MC4 LINE L1 7539 7854 -188 510 239 24 0 chr11 30683797 30683939 -118099533 + L1MC4 LINE L1 7908 8042 0 523 323 32 0 chr11 30684422 30684580 -118098892 - MIR SINE MIR -48 214 52 760 281 80 21 chr11 30684831 30685204 -118098268 + L1ME2 LINE L1 5531 5925 -196 1792 300 60 16 chr11 30685210 30685943 -118097529 - L2 LINE L2 -602 2712 1948 729 246 31 0 chr11 30685996 30686187 -118097285 + L1ME2 LINE L1 5959 6155 -9 228 203 14 0 chr11 30686206 30686275 -118097197 + L1ME4a LINE L1 6051 6120 -1 22 35 0 0 chr11 30687798 30687827 -118095645 + AT_rich Low_complexity Low_complexity 1 29 0 949 121 54 13 chr11 30687836 30687985 -118095487 + AluSg/x SINE Alu 69 223 -87 648 174 9 9 chr11 30688154 30688269 -118095203 - MER33 DNA MER1_type -208 116 2 215 283 0 0 chr11 30688385 30688438 -118095034 + (TG)n Simple_repeat Simple_repeat 1 53 0 348 319 0 25 chr11 30688441 30688560 -118094912 - MIR SINE MIR -11 251 136 450 146 0 0 chr11 30688845 30688927 -118094545 + (TG)n Simple_repeat Simple_repeat 1 82 0 246 128 0 26 chr11 30688944 30688983 -118094489 + LTR67 LTR ERVL 520 557 0 181 67 0 33 chr11 30689360 30689390 -118094082 + L2 LINE L2 3284 3312 -1 413 228 9 0 chr11 30689517 30689632 -118093840 + L1MA4A LINE L1 6042 6278 0 224 313 227 49 chr11 30690627 30690790 -118092682 + L2 LINE L2 3077 3268 -4 205 250 45 0 chr11 30691154 30691198 -118092274 - L2 LINE L2 -86 3186 3141 44 56 0 0 chr11 30691221 30691293 -118092179 + AT_rich Low_complexity Low_complexity 1 72 0 279 382 47 12 chr11 30691959 30692129 -118091343 + MIR SINE MIR 59 234 -28 229 290 0 43 chr11 30692855 30692948 -118090524 + MIR SINE MIR 13 101 -161 21 0 0 0 chr11 30693000 30693021 -118090451 + AT_rich Low_complexity Low_complexity 1 21 0 251 330 125 0 chr11 30694428 30694516 -118088956 - L2 LINE L2 -18 3254 3156 777 298 86 58 chr11 30694697 30695860 -118087612 - L1MC/D LINE L1 -747 5399 4441 282 319 135 38 chr11 30695995 30696180 -118087292 + MIR SINE MIR 48 250 -12 1545 167 14 22 chr11 30696796 30697072 -118086400 - AluJo SINE Alu -33 279 6 180 0 0 0 chr11 30697149 30697169 -118086303 + (A)n Simple_repeat Simple_repeat 1 20 0 219 284 108 54 chr11 30697245 30697319 -118086153 - L2 LINE L2 -47 3225 3148 401 225 148 0 chr11 30697467 30697609 -118085863 - MER103 DNA DNA -3 163 1 223 274 89 59 chr11 30697685 30697820 -118085652 - MIR SINE MIR -54 208 70 224 310 35 23 chr11 30698846 30698933 -118084539 + L2 LINE L2 2915 3002 -270 29 28 0 0 chr11 30698965 30699001 -118084471 + AT_rich Low_complexity Low_complexity 1 36 0 1193 151 9 41 chr11 30700362 30700581 -118082891 - THE1B LTR MaLR 0 364 153 1652 143 66 3 chr11 30700686 30700972 -118082500 - AluSx SINE Alu -5 307 4 815 138 75 13 chr11 30700982 30701141 -118082331 - MLT1C LTR MaLR -293 174 6 24 32 0 0 chr11 30702284 30702315 -118081157 + AT_rich Low_complexity Low_complexity 1 31 0 821 294 68 14 chr11 30703466 30703977 -118079495 + L1MEc LINE L1 1243 1781 -4615 3411 188 29 28 chr11 30703989 30704804 -118078668 + L1M4 LINE L1 4459 5274 -872 729 118 7 138 chr11 30706706 30706858 -118076614 + AluJb SINE Alu 2 133 -179 261 0 0 0 chr11 30706861 30706890 -118076582 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1088 130 0 7 chr11 30706901 30707055 -118076417 + AluJb SINE Alu 134 286 -26 22 0 0 0 chr11 30707055 30707077 -118076395 + AT_rich Low_complexity Low_complexity 1 22 0 237 333 0 30 chr11 30707365 30707464 -118076008 - L2 LINE L2 -23 3249 3154 367 359 72 18 chr11 30707742 30707866 -118075606 + L2 LINE L2 3097 3234 -38 521 275 41 18 chr11 30707866 30708037 -118075435 + MER5B DNA MER1_type 3 177 -1 367 359 72 18 chr11 30708037 30708079 -118075393 + L2 LINE L2 3234 3272 0 7974 128 42 19 chr11 30708443 30710503 -118072969 + L1PA11 LINE L1 4068 6172 -2 223 376 86 0 chr11 30710503 30710596 -118072876 - MIR SINE MIR -160 102 2 360 349 53 68 chr11 30710615 30711239 -118072233 - L2 LINE L2 -5 3267 2638 10059 166 20 9 chr11 30712443 30716266 -118067206 - L1MA3 LINE L1 -5 7719 3864 6342 132 20 83 chr11 30716266 30718056 -118065416 - L1MA3 LINE L1 -4927 2638 17 386 315 82 0 chr11 30719378 30719524 -118063948 - MER117 DNA MER1_type 0 197 40 295 259 0 0 chr11 30719992 30720046 -118063426 + Zaphod DNA AcHobo 7 60 -3971 2020 296 41 16 chr11 30720071 30720653 -118062819 + MER115 DNA AcHobo 97 693 0 346 317 16 0 chr11 30720653 30720775 -118062697 + LTR67 LTR ERVL 434 557 0 409 254 106 42 chr11 30720935 30721077 -118062395 + MIR3 SINE MIR 13 163 -45 878 296 90 23 chr11 30722136 30722568 -118060904 + LTR33A LTR ERVL 61 521 -2 7636 196 45 18 chr11 30723685 30725572 -118057900 - L1 LINE L1 -1146 5000 3062 489 201 223 7 chr11 30726224 30726363 -118057109 + L1ME2 LINE L1 5959 6127 -37 408 229 83 19 chr11 30726410 30726567 -118056905 + MER113 DNA MER1_type? 186 352 -169 3068 228 123 19 chr11 30726778 30727296 -118056176 + L1MC4 LINE L1 6460 6923 -1119 498 17 0 0 chr11 30727296 30727355 -118056117 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3068 228 123 19 chr11 30727355 30727374 -118056098 + L1MC4 LINE L1 6923 6939 -1103 1708 174 10 17 chr11 30727374 30727667 -118055805 + AluJo SINE Alu 9 299 -13 3068 228 123 19 chr11 30727667 30728137 -118055335 + L1MC4 LINE L1 6939 7573 -469 312 304 54 34 chr11 30728146 30728294 -118055178 - L2 LINE L2 -189 3083 2933 743 285 117 33 chr11 30728481 30728909 -118054563 - LTR16B LTR ERVL 0 464 1 2088 112 0 3 chr11 30730546 30730831 -118052641 + AluSx SINE Alu 1 284 -28 1017 165 93 43 chr11 30730959 30731238 -118052234 + MER33 DNA MER1_type 31 323 -1 194 306 202 40 chr11 30732163 30732287 -118051185 + L2 LINE L2 3129 3272 0 185 283 43 0 chr11 30733324 30733370 -118050102 - MIR3 SINE MIR -21 187 140 1800 182 3 0 chr11 30733473 30733781 -118049691 + AluJb SINE Alu 1 309 -3 266 261 84 25 chr11 30734366 30734485 -118048987 - MIR SINE MIR -27 235 110 311 229 83 37 chr11 30734550 30734659 -118048813 - HAL1b LINE L1 -1 1347 1234 6969 56 35 0 chr11 30734711 30735654 -118047818 - L1PA7 LINE L1 -2 6152 5195 709 261 78 41 chr11 30735918 30736263 -118047209 - HAL1b LINE L1 -383 965 608 544 271 32 64 chr11 30736409 30736752 -118046720 - L1MEd LINE L1 -4884 1235 904 275 257 80 62 chr11 30737230 30737343 -118046129 - L1MEd LINE L1 -5953 166 52 4436 219 141 19 chr11 30738231 30739298 -118044174 - Tigger3b DNA MER2_type -34 1197 1 439 258 7 161 chr11 30739872 30739941 -118043531 - MIR SINE MIR 0 262 184 1928 193 58 17 chr11 30739941 30740356 -118043116 - MSTB1 LTR MaLR 0 432 1 439 258 7 161 chr11 30740356 30740596 -118042876 - MIR SINE MIR -78 184 1 8050 205 12 5 chr11 30741079 30742808 -118040664 - L1 LINE L1 -1152 4994 3254 701 306 60 81 chr11 30742876 30743003 -118040469 + L3 LINE CR1 846 974 -603 2067 95 11 14 chr11 30743003 30743315 -118040157 + AluY SINE Alu 1 311 0 701 306 60 81 chr11 30743315 30743800 -118039672 + L3 LINE CR1 974 1446 -131 587 328 35 68 chr11 30744033 30744430 -118039042 + L1M4c LINE L1 423 806 -5497 348 190 0 0 chr11 30744604 30744662 -118038810 + L1M4c LINE L1 1088 1145 -5168 6968 64 1 6 chr11 30744662 30746403 -118037069 + L1PA7 LINE L1 4426 6153 -1 2598 213 56 18 chr11 30746424 30747160 -118036312 + L1M4c LINE L1 1109 1872 -4512 4814 237 46 7 chr11 30747166 30749692 -118033780 - L1MA4 LINE L1 0 6300 3670 4975 80 0 4 chr11 30749856 30750543 -118032929 - L1PA3 LINE L1 -2 6153 5470 24 0 0 0 chr11 30801397 30801421 -117982051 + AT_rich Low_complexity Low_complexity 1 24 0 216 377 28 0 chr11 30802194 30802300 -117981172 + MIR SINE MIR 32 140 -122 298 265 24 0 chr11 30802347 30802430 -117981042 + MER94 DNA DNA 1 85 -49 23134 37 0 0 chr11 30803942 30807346 -117976126 + L1PA3 LINE L1 2529 5932 -223 4700 30 0 0 chr11 30807446 30808003 -117975469 + L1PA4 LINE L1 5592 6148 -7 31 26 0 0 chr11 30808003 30808041 -117975431 + AT_rich Low_complexity Low_complexity 1 38 0 2267 89 3 16 chr11 30808109 30808424 -117975048 - AluY SINE Alu 0 311 1 635 115 35 0 chr11 30808701 30808814 -117974658 + L1MC3 LINE L1 6981 7097 -688 265 333 10 0 chr11 30808814 30808910 -117974562 + MLT1F1 LTR MaLR 35 131 -436 3090 165 26 14 chr11 30808910 30809414 -117974058 + L1MC3 LINE L1 7196 7709 -76 1937 188 11 6 chr11 30809414 30809776 -117973696 - MLT1A1 LTR MaLR 0 365 2 3090 165 26 14 chr11 30809776 30809853 -117973619 + L1MC3 LINE L1 7709 7784 -1 23 54 0 0 chr11 30809862 30809899 -117973573 + AT_rich Low_complexity Low_complexity 1 37 0 277 273 133 38 chr11 30810245 30810418 -117973054 + MIR SINE MIR 74 260 -2 1586 203 0 29 chr11 30810856 30811166 -117972306 + AluJo SINE Alu 1 301 -11 24 0 0 0 chr11 30811210 30811234 -117972238 + AT_rich Low_complexity Low_complexity 1 24 0 214 415 37 10 chr11 30811517 30811703 -117971769 - MIR SINE MIR -50 212 21 3870 119 38 2 chr11 30811982 30812593 -117970879 + MER41B LTR ERV1 3 635 0 27 29 0 0 chr11 30813399 30813433 -117970039 + AT_rich Low_complexity Low_complexity 1 34 0 193 365 135 17 chr11 30813679 30814035 -117969437 + L2 LINE L2 2579 2976 -338 1327 51 45 0 chr11 30814201 30814379 -117969093 + L1PA4 LINE L1 5970 6155 0 221 295 82 66 chr11 30814562 30814684 -117968788 + L2 LINE L2 3132 3255 -17 458 261 17 0 chr11 30815516 30815635 -117967837 + LTR67 LTR ERVL 435 555 -2 1956 148 3 0 chr11 30815882 30816180 -117967292 - AluSx SINE Alu -13 299 1 1548 157 52 7 chr11 30816638 30816944 -117966528 + L1MA7 LINE L1 4584 4903 -1243 4679 154 52 47 chr11 30817045 30818120 -117965352 + L1MA7 LINE L1 5197 6289 -2 207 0 0 0 chr11 30819108 30819131 -117964341 + (GA)n Simple_repeat Simple_repeat 2 24 0 1772 158 12 98 chr11 30819723 30820123 -117963349 + MER47A DNA MER2_type 1 366 0 503 314 64 36 chr11 30820448 30820668 -117962804 + MIR SINE MIR 29 254 -8 1541 154 11 0 chr11 30821284 30821550 -117961922 + AluSx SINE Alu 44 312 0 316 210 177 0 chr11 30821556 30821680 -117961792 + MER20B DNA MER1_type 516 661 -122 220 171 0 0 chr11 30822327 30822362 -117961110 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 1683 202 55 3 chr11 30824524 30824871 -117958601 - MLT1A1 LTR MaLR 0 365 1 589 298 98 9 chr11 30825152 30825367 -117958105 - MIR SINE MIR 0 262 29 24 0 0 0 chr11 30825494 30825518 -117957954 + AT_rich Low_complexity Low_complexity 1 24 0 320 237 69 116 chr11 30825621 30825853 -117957619 + MER112 DNA MER1_type 3 223 -37 636 232 135 43 chr11 30825857 30826042 -117957430 - MIR SINE MIR -31 231 30 516 323 123 55 chr11 30826449 30827148 -117956324 + L2 LINE L2 2580 3308 -5 21 0 0 0 chr11 30827254 30827275 -117956197 + AT_rich Low_complexity Low_complexity 1 21 0 310 216 68 0 chr11 30828766 30828840 -117954632 + HAL1b LINE L1 397 475 -873 1049 169 143 19 chr11 30829024 30829324 -117954148 - MER61D LTR ERV1 -116 385 1 838 206 75 110 chr11 30829332 30829759 -117953713 - LTR8A LTR ERV1 -7 720 309 1364 167 4 25 chr11 30829790 30830074 -117953398 + AluJb SINE Alu 49 327 0 890 210 66 121 chr11 30830104 30830409 -117953063 - LTR8 LTR ERV1 -434 257 1 591 296 52 83 chr11 30830434 30830448 -117953024 - L2 LINE L2 -407 2907 2894 2202 169 47 45 chr11 30830448 30830956 -117952516 - LTR54 LTR ERV1 0 510 2 591 296 52 83 chr11 30830956 30831401 -117952071 - L2 LINE L2 -420 2894 2462 246 239 195 9 chr11 30831458 30831571 -117951901 - L2 LINE L2 -945 2369 2236 181 283 0 0 chr11 30832071 30832117 -117951355 - L2 LINE L2 -1081 2233 2188 296 370 75 72 chr11 30832212 30832504 -117950968 + L2 LINE L2 2976 3268 -4 32 0 0 0 chr11 30833699 30833731 -117949741 + AT_rich Low_complexity Low_complexity 1 32 0 33 0 0 0 chr11 30834010 30834043 -117949429 + AT_rich Low_complexity Low_complexity 1 33 0 216 266 38 13 chr11 30835273 30835352 -117948120 + L3b LINE CR1 1251 1331 -252 203 360 35 0 chr11 30835454 30835540 -117947932 - MIR SINE MIR -23 239 151 577 226 32 8 chr11 30835774 30835898 -117947574 + MER104 DNA Tc2 51 177 -3 468 240 96 0 chr11 30836028 30836174 -117947298 - MER103 DNA DNA 0 166 7 203 254 70 28 chr11 30837566 30837637 -117945835 + MIR SINE MIR 157 230 -32 224 300 57 23 chr11 30838980 30839074 -117944398 - MIR SINE MIR -65 143 62 661 202 9 0 chr11 30839461 30839570 -117943902 + MER2 DNA MER2_type 1 110 -235 3531 110 112 0 chr11 30839570 30840141 -117943331 - MER41B LTR ERV1 0 635 1 547 222 116 44 chr11 30840141 30840363 -117943109 + MER2 DNA MER2_type 107 344 -1 665 257 6 40 chr11 30841030 30841205 -117942267 + MIR SINE MIR 7 175 -87 318 293 81 8 chr11 30841229 30841352 -117942120 + MIR3 SINE MIR 54 185 -23 392 365 28 6 chr11 30841470 30841648 -117941824 + MIR SINE MIR 66 247 -15 371 245 147 31 chr11 30842554 30842717 -117940755 + MIR SINE MIR 81 262 0 526 32 0 0 chr11 30843926 30843989 -117939483 + MLT2A1 LTR ERVL 1 63 -381 21510 70 4 4 chr11 30843990 30846751 -117936721 + HERVL-A1 LTR ERVL 2893 5654 0 2345 134 36 41 chr11 30846756 30847197 -117936275 + MLT2A1 LTR ERVL 6 444 0 307 169 14 28 chr11 30847749 30847820 -117935652 - MER20B DNA MER1_type 0 783 714 22 35 0 0 chr11 30848170 30848199 -117935273 + AT_rich Low_complexity Low_complexity 1 29 0 218 292 28 14 chr11 30848751 30848823 -117934649 - L3b LINE CR1 -220 1363 1291 21 0 0 0 chr11 30849270 30849291 -117934181 + AT_rich Low_complexity Low_complexity 1 21 0 41478 59 3 0 chr11 30849909 30856048 -117927424 + L1PA5 LINE L1 1 6152 -2 391 336 116 21 chr11 30856076 30856543 -117926929 - L1M4 LINE L1 -1087 5059 4549 204 163 0 0 chr11 30856562 30856605 -117926867 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 1068 206 123 8 chr11 30856605 30856848 -117926624 - AluJo SINE Alu -28 284 14 276 281 46 33 chr11 30856864 30857057 -117926415 - L1M4 LINE L1 -1594 4552 4357 2142 188 72 76 chr11 30857064 30857731 -117925741 + MER39 LTR ERV1 1 705 -2 409 336 93 53 chr11 30858083 30858278 -117925194 - L1M4 LINE L1 -2293 3853 3667 1785 154 31 0 chr11 30858278 30858564 -117924908 + AluJo SINE Alu 1 295 -17 409 336 93 53 chr11 30858564 30858657 -117924815 - L1M4 LINE L1 -2479 3667 3579 2444 69 0 0 chr11 30858657 30858961 -117924511 + AluY SINE Alu 1 304 -7 409 336 93 53 chr11 30858961 30859442 -117924030 - L1M4 LINE L1 -2567 3579 3052 318 295 57 26 chr11 30859502 30859669 -117923803 + MIR SINE MIR 37 206 -56 1558 143 68 11 chr11 30859813 30860092 -117923380 - MER2 DNA MER2_type -5 340 46 272 327 52 33 chr11 30860651 30860804 -117922668 - L3 LINE CR1 -206 1371 1216 25 0 0 0 chr11 30860888 30860913 -117922559 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 30861109 30861137 -117922335 + AT_rich Low_complexity Low_complexity 1 28 0 407 303 78 57 chr11 30861249 30861493 -117921979 - MIR SINE MIR -13 249 1 304 260 32 32 chr11 30861736 30861859 -117921613 + MIR SINE MIR 94 216 -46 581 330 54 12 chr11 30862068 30862401 -117921071 + L1MEc LINE L1 38 384 -6012 287 315 19 19 chr11 30862409 30862517 -117920955 - L2 LINE L2 -493 2821 2714 511 142 85 9 chr11 30863375 30863481 -117919991 - Charlie5 DNA MER1_type -173 2439 2326 446 196 18 9 chr11 30863559 30863671 -117919801 - Charlie5 DNA MER1_type -264 2348 2236 596 125 0 48 chr11 30863682 30863786 -117919686 - Charlie5 DNA MER1_type -2513 99 1 401 284 0 0 chr11 30863986 30864088 -117919384 - MIR SINE MIR -1 261 160 736 197 82 11 chr11 30864090 30864273 -117919199 - MER119 DNA MER1_type -11 572 377 1031 199 79 0 chr11 30864273 30864540 -117918932 - L1MA4 LINE L1 -14 6286 5999 1282 280 19 22 chr11 30864540 30864586 -117918886 - MER119 DNA MER1_type -190 393 348 1844 158 129 23 chr11 30864586 30864973 -117918499 + MSTA LTR MaLR 1 428 0 1282 280 19 22 chr11 30864973 30865294 -117918178 - MER119 DNA MER1_type -235 348 27 572 270 46 0 chr11 30865306 30865458 -117918014 - MIR SINE MIR -95 167 9 377 329 114 6 chr11 30865559 30865726 -117917746 + LTR33A LTR ERVL 1 185 -338 366 325 32 32 chr11 30865953 30866079 -117917393 - MER5A DNA MER1_type 0 189 64 208 174 22 0 chr11 30866098 30866144 -117917328 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 611 238 66 7 chr11 30866597 30866748 -117916724 + MLT1G LTR MaLR 431 590 0 241 271 114 0 chr11 30868235 30868305 -117915167 - L2 LINE L2 -58 3214 3137 1070 241 49 82 chr11 30868528 30869026 -117914446 + L2 LINE L2 2632 3105 -208 2408 81 0 3 chr11 30869026 30869335 -117914137 - AluY SINE Alu -3 308 1 1070 241 49 82 chr11 30869335 30869536 -117913936 + L2 LINE L2 3105 3311 -2 803 291 116 54 chr11 30870537 30870960 -117912512 - L2 LINE L2 -1 3312 2864 1944 292 102 34 chr11 30870978 30871830 -117911642 - L2 LINE L2 -580 2734 1825 17276 61 0 4 chr11 30871830 30874027 -117909445 + L1M4c LINE L1 4 2188 -3960 16642 30 0 0 chr11 30874027 30876783 -117906689 + L1PA3 LINE L1 3400 6155 0 17276 61 0 4 chr11 30876783 30876796 -117906676 + L1M4c LINE L1 2188 2200 -3948 191 156 0 0 chr11 30876799 30876831 -117906641 - L2 LINE L2 -1496 1818 1787 902 243 52 29 chr11 30878108 30878452 -117905020 + HUERS-P3b LTR ERV1 268 558 -2530 1268 179 51 72 chr11 30878469 30878779 -117904693 + HUERS-P3b LTR ERV1 289 887 -4783 12626 173 27 47 chr11 30878782 30881906 -117901566 + HUERS-P3b LTR ERV1 615 3801 -3195 2301 109 37 3 chr11 30881906 30882256 -117901216 - THE1B LTR MaLR 0 364 3 12626 173 27 47 chr11 30882256 30883903 -117899569 + HUERS-P3b LTR ERV1 3801 6994 -2 1633 179 41 24 chr11 30883906 30884327 -117899145 + MER61D LTR ERV1 1 501 0 1835 254 105 10 chr11 30884508 30885003 -117898469 - MLT1F LTR MaLR 0 542 1 24 0 0 0 chr11 30886045 30886069 -117897403 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr11 30886917 30886937 -117896535 + (A)n Simple_repeat Simple_repeat 1 20 0 877 254 117 35 chr11 30887366 30887709 -117895763 + MER20B DNA MER1_type 85 455 -328 281 250 0 71 chr11 30887692 30887776 -117895696 - MER20B DNA MER1_type -239 544 467 * 1633 191 3 7 chr11 30888112 30888411 -117895061 - AluJb SINE Alu -14 298 1 2058 146 0 0 chr11 30888729 30889031 -117894441 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr11 30889435 30889459 -117894013 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 30890076 30890105 -117893367 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr11 30890657 30890688 -117892784 + AT_rich Low_complexity Low_complexity 1 31 0 573 183 100 8 chr11 30890988 30891108 -117892364 + MLT1A1 LTR MaLR 224 354 -11 229 323 0 15 chr11 30891224 30891289 -117892183 - L3b LINE CR1 -24 1559 1496 556 349 48 63 chr11 30891318 30891779 -117891693 + L2 LINE L2 2817 3270 -2 603 259 48 120 chr11 30891942 30892316 -117891156 - L2 LINE L2 -9 3304 2958 237 180 0 0 chr11 30895834 30895884 -117887588 + (TA)n Simple_repeat Simple_repeat 1 50 0 399 41 0 0 chr11 30896066 30896115 -117887357 + (CA)n Simple_repeat Simple_repeat 2 50 0 332 279 98 0 chr11 30897132 30897254 -117886218 - L2 LINE L2 -12 3301 3168 1447 150 28 0 chr11 30897302 30897556 -117885916 + L1MA3 LINE L1 6045 6305 0 359 103 8 239 chr11 30897855 30897972 -117885500 - MER63 DNA MER1_type -346 716 1 1093 69 0 0 chr11 30898187 30898317 -117885155 + AluY SINE Alu 1 130 -181 454 308 186 22 chr11 30899008 30899326 -117884146 - L2 LINE L2 0 3313 2944 621 260 42 16 chr11 30899433 30899640 -117883832 - MIR SINE MIR 0 262 51 336 194 0 0 chr11 30900040 30900112 -117883360 + L1MB7 LINE L1 6097 6168 -16 787 258 127 0 chr11 30901926 30902155 -117881317 - MIR SINE MIR 0 262 5 826 118 0 0 chr11 30902704 30902823 -117880649 + AluY SINE Alu 189 307 -4 180 0 0 0 chr11 30903517 30903537 -117879935 + (TA)n Simple_repeat Simple_repeat 2 21 0 240 277 0 0 chr11 30903537 30903620 -117879852 - L1MC4 LINE L1 -1339 6703 6621 697 236 0 35 chr11 30903880 30904054 -117879418 + FRAM SINE Alu 1 165 -11 314 206 0 32 chr11 30904311 30904374 -117879098 - MIR SINE MIR -200 62 2 347 171 0 14 chr11 30904780 30904850 -117878622 - MLT2D LTR ERVL -48 366 298 429 156 0 0 chr11 30904851 30904928 -117878544 + (TG)n Simple_repeat Simple_repeat 2 78 0 205 292 0 0 chr11 30904928 30904976 -117878496 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 2348 142 32 48 chr11 30904978 30905264 -117878208 + Tigger2a DNA MER2_type 4 282 -2426 2379 94 3 0 chr11 30905264 30905571 -117877901 + AluSp SINE Alu 5 312 -1 2348 142 32 48 chr11 30905571 30905722 -117877750 + Tigger2a DNA MER2_type 282 434 0 2340 170 43 30 chr11 30905953 30906067 -117877405 + L1MB7 LINE L1 5565 5676 -508 2197 123 0 0 chr11 30906067 30906367 -117877105 + AluSx SINE Alu 1 300 -12 2340 170 43 30 chr11 30906367 30906758 -117876714 + L1MB7 LINE L1 5676 6077 -107 1003 154 6 0 chr11 30906771 30906933 -117876539 - Tigger5 DNA MER2_type 0 2323 2161 372 226 47 19 chr11 30908842 30908948 -117874524 + MIR SINE MIR 118 226 -36 197 276 52 0 chr11 30909270 30909328 -117874144 + L2 LINE L2 3187 3247 -66 2053 125 0 0 chr11 30911375 30911664 -117871808 - AluSx SINE Alu -23 289 1 198 0 0 0 chr11 30911779 30911801 -117871671 + (T)n Simple_repeat Simple_repeat 1 22 0 230 254 45 0 chr11 30912147 30912214 -117871258 - L2 LINE L2 -527 2787 2718 453 299 41 46 chr11 30912350 30912544 -117870928 + MIR SINE MIR 70 262 0 472 185 69 23 chr11 30912696 30912928 -117870544 + L1MA9 LINE L1 5953 6290 -22 460 276 77 57 chr11 30913021 30913267 -117870205 + MIR SINE MIR 12 262 0 499 262 117 0 chr11 30913565 30913710 -117869762 - L2 LINE L2 0 3313 3152 277 300 11 22 chr11 30913968 30914058 -117869414 - MIR3 SINE MIR -4 204 116 938 183 113 5 chr11 30914127 30914340 -117869132 - MER46A DNA MER2_type 0 236 1 5291 82 25 8 chr11 30914917 30915670 -117867802 - MER4E LTR ERV1 0 766 1 347 225 12 150 chr11 30916073 30916233 -117867239 + MER20B DNA MER1_type 42 179 -604 387 223 97 0 chr11 30916355 30916458 -117867014 - MIR SINE MIR -66 196 84 601 270 207 11 chr11 30916724 30916994 -117866478 + L2 LINE L2 1675 1997 -1317 1496 240 150 39 chr11 30917076 30917707 -117865765 + L2 LINE L2 2286 3028 -285 3400 140 63 28 chr11 30917737 30918386 -117865086 - L1MA7 LINE L1 0 6291 5620 269 139 0 14 chr11 30918442 30918514 -117864958 + (TTTTTG)n Simple_repeat Simple_repeat 1 71 0 221 210 16 0 chr11 30919162 30919224 -117864248 + (TATG)n Simple_repeat Simple_repeat 2 64 0 911 168 12 0 chr11 30920171 30920332 -117863140 + L1PA15 LINE L1 5995 6157 -8 487 144 22 0 chr11 30921146 30921236 -117862236 - AluY SINE Alu -1 310 219 1642 186 13 10 chr11 30921310 30921621 -117861851 - AluJo SINE Alu 0 312 1 226 323 125 69 chr11 30921752 30922127 -117861345 - L2 LINE L2 -19 3253 2858 227 313 73 21 chr11 30922400 30922496 -117860976 - L2 LINE L2 -932 2382 2282 1945 217 182 3 chr11 30922866 30923806 -117859666 - L1MC4 LINE L1 0 8042 6810 517 302 29 17 chr11 30924250 30924422 -117859050 - MER5B DNA MER1_type -3 175 2 417 280 37 0 chr11 30924868 30924975 -117858497 + MIR SINE MIR 34 144 -118 2376 63 7 0 chr11 30925234 30925535 -117857937 + AluY SINE Alu 1 303 -8 34 24 0 0 chr11 30926118 30926159 -117857313 + AT_rich Low_complexity Low_complexity 1 41 0 348 111 0 0 chr11 30926160 30926223 -117857249 + (TATG)n Simple_repeat Simple_repeat 2 64 0 602 139 19 28 chr11 30926243 30926351 -117857121 - AluJb SINE Alu -171 141 35 1982 155 155 3 chr11 30927659 30928040 -117855432 + Tigger3(Golem) DNA MER2_type 2 440 -2589 435 232 0 0 chr11 30928036 30928118 -117855354 + Tigger3(Golem) DNA MER2_type 2947 3028 -1 * 21 0 0 0 chr11 30929209 30929230 -117854242 + AT_rich Low_complexity Low_complexity 1 21 0 205 305 76 8 chr11 30929602 30929720 -117853752 + MIR3 SINE MIR 81 206 -2 1105 222 16 8 chr11 30929720 30929977 -117853495 - MIR SINE MIR -1 261 3 553 299 77 21 chr11 30930023 30930257 -117853215 - MIR SINE MIR -2 260 14 517 130 50 0 chr11 30930430 30930530 -117852942 + L1MA8 LINE L1 6186 6290 -1 26 0 0 0 chr11 30930580 30930606 -117852866 + AT_rich Low_complexity Low_complexity 1 26 0 217 286 38 8 chr11 30931332 30931465 -117852007 + (TA)n Simple_repeat Simple_repeat 1 137 0 22 94 0 0 chr11 30932484 30932548 -117850924 + AT_rich Low_complexity Low_complexity 1 64 0 2777 10 0 0 chr11 30932551 30932856 -117850616 - AluYa5 SINE Alu -6 305 1 213 356 30 10 chr11 30932978 30933079 -117850393 + MIR SINE MIR 35 137 -125 1640 274 114 28 chr11 30933138 30933588 -117849884 - L2 LINE L2 -43 3270 2860 2388 101 0 0 chr11 30933588 30933894 -117849578 - AluSq SINE Alu -7 306 1 1640 274 114 28 chr11 30933894 30934303 -117849169 - L2 LINE L2 -453 2860 2332 3593 33 0 0 chr11 30934303 30934725 -117848747 - L1PA4 LINE L1 -254 5901 5480 1793 60 13 0 chr11 30934725 30934957 -117848515 + L1PA4 LINE L1 5916 6152 -3 377 270 169 67 chr11 30934957 30935135 -117848337 - L2 LINE L2 -979 2335 2140 35 0 0 0 chr11 30935196 30935231 -117848241 + AT_rich Low_complexity Low_complexity 1 35 0 284 327 20 30 chr11 30935922 30936023 -117847449 - MIR3 SINE MIR -44 164 65 189 0 0 0 chr11 30936295 30936316 -117847156 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 233 281 209 22 chr11 30937645 30937784 -117845688 + L3 LINE CR1 1077 1241 -336 281 198 13 32 chr11 30938342 30938499 -117844973 + (TA)n Simple_repeat Simple_repeat 1 154 0 956 261 32 20 chr11 30938720 30938969 -117844503 + MIR SINE MIR 11 262 0 21 0 0 0 chr11 30939129 30939150 -117844322 + AT_rich Low_complexity Low_complexity 1 21 0 777 130 9 187 chr11 30939260 30939490 -117843982 + 7SK RNA RNA 5 193 0 23 0 0 0 chr11 30939799 30939822 -117843650 + AT_rich Low_complexity Low_complexity 1 23 0 651 326 81 54 chr11 30940198 30940679 -117842793 - L2 LINE L2 -6 3307 2814 408 292 178 0 chr11 30940659 30940844 -117842628 - L2 LINE L2 -641 2673 2456 * 16104 173 41 5 chr11 30940849 30943746 -117839726 + L1MA2 LINE L1 15 3017 -4548 11818 151 33 17 chr11 30943757 30944770 -117838702 + L1MA2 LINE L1 4250 5246 -2477 2234 90 3 0 chr11 30944770 30945060 -117838412 + AluSp SINE Alu 1 291 -22 11818 151 33 17 chr11 30945060 30947458 -117836014 + L1MA2 LINE L1 5246 7722 -1 1165 309 240 10 chr11 30947469 30948390 -117835082 - L2 LINE L2 -849 2465 1333 586 237 83 56 chr11 30948452 30948718 -117834754 + L2 LINE L2 3041 3313 0 470 322 260 12 chr11 30948729 30949148 -117834324 - L2 LINE L2 -2092 1222 700 4821 113 20 0 chr11 30950236 30950946 -117832526 + L1PA15 LINE L1 5333 6056 -109 5949 39 9 18 chr11 30951067 30951836 -117831636 + L1PA7 LINE L1 5389 6150 -4 23 0 0 0 chr11 30951836 30951859 -117831613 + AT_rich Low_complexity Low_complexity 1 23 0 261 260 73 21 chr11 30952129 30952225 -117831247 + MER113 DNA MER1_type? 421 521 0 453 340 19 12 chr11 30952246 30952408 -117831064 + MIR3 SINE MIR 32 194 -14 811 168 41 31 chr11 30952740 30952936 -117830536 - L1MC3 LINE L1 0 7785 7588 3811 172 46 62 chr11 30953067 30954036 -117829436 - LTR13 LTR ERVK 0 954 1 23 0 0 0 chr11 30954473 30954496 -117828976 + AT_rich Low_complexity Low_complexity 1 23 0 238 267 33 0 chr11 30954678 30954738 -117828734 + MIR SINE MIR 88 149 -113 1617 36 5 0 chr11 30954901 30955096 -117828376 + L1PA3 LINE L1 5958 6153 -2 27 0 0 0 chr11 30955096 30955123 -117828349 + AT_rich Low_complexity Low_complexity 1 27 0 326 294 35 63 chr11 30955315 30955458 -117828014 + MIR SINE MIR 48 186 -76 204 359 0 39 chr11 30955521 30955599 -117827873 - MIR SINE MIR -168 94 20 225 0 0 0 chr11 30955743 30955768 -117827704 + (A)n Simple_repeat Simple_repeat 1 25 0 275 333 18 35 chr11 30955769 30955883 -117827589 - MIR SINE MIR -79 129 18 235 270 11 34 chr11 30956113 30956202 -117827270 - MARNA DNA Mariner -470 116 30 347 252 179 0 chr11 30956504 30956627 -117826845 - MIR3 SINE MIR -18 190 46 203 338 0 14 chr11 30956989 30957063 -117826409 - MIR3 SINE MIR -1 207 135 347 325 138 42 chr11 30957878 30958263 -117825209 + L2 LINE L2 2435 2856 -458 272 333 12 12 chr11 30958400 30958484 -117824988 - L2 LINE L2 -27 3286 3203 6999 102 38 12 chr11 30958485 30959566 -117823906 + L1P LINE L1 3316 4424 -1722 209 261 62 0 chr11 30959749 30959814 -117823658 - MIR SINE MIR -11 251 183 459 261 57 40 chr11 30959859 30960035 -117823437 - MIR SINE MIR -76 186 8 357 257 37 59 chr11 30960138 30960196 -117823276 - MIR SINE MIR -13 249 191 2087 72 0 4 chr11 30960196 30960459 -117823013 + AluSq SINE Alu 36 297 -16 357 257 37 59 chr11 30960459 30960536 -117822936 - MIR SINE MIR -71 191 117 21 0 0 0 chr11 30962346 30962367 -117821105 + AT_rich Low_complexity Low_complexity 1 21 0 379 121 17 0 chr11 30962637 30962695 -117820777 + MIR SINE MIR 91 149 -113 25 20 0 59 chr11 30962781 30962832 -117820640 + AT_rich Low_complexity Low_complexity 1 48 0 5425 177 19 15 chr11 30963540 30965502 -117817970 + L1PB3 LINE L1 4184 6149 -5 29 28 0 0 chr11 30965533 30965569 -117817903 + AT_rich Low_complexity Low_complexity 1 36 0 2037 125 0 4 chr11 30965705 30965986 -117817486 + AluSq SINE Alu 1 280 -33 569 110 11 0 chr11 30965991 30966082 -117817390 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 2426 123 80 5 chr11 30966601 30966999 -117816473 + MSTA LTR MaLR 1 428 0 391 288 23 11 chr11 30967183 30967360 -117816112 + L1M4 LINE L1 3278 3456 -2690 610 220 8 8 chr11 30967360 30967478 -117815994 - MER20 DNA MER1_type -2 217 100 1270 242 28 25 chr11 30967478 30967874 -117815598 + L1M4 LINE L1 3454 3850 -2296 26 0 0 0 chr11 30968271 30968297 -117815175 + AT_rich Low_complexity Low_complexity 1 26 0 274 146 0 0 chr11 30968917 30968965 -117814507 + L1M4 LINE L1 3650 3697 -2449 28 61 0 0 chr11 30968977 30969026 -117814446 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr11 30969906 30969928 -117813544 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 30971659 30971680 -117811792 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr11 30972294 30972356 -117811116 + AT_rich Low_complexity Low_complexity 1 62 0 225 265 143 10 chr11 30972682 30972780 -117810692 - MIR SINE MIR -7 255 145 31 44 0 0 chr11 30973031 30973076 -117810396 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr11 30973474 30973518 -117809954 + AT_rich Low_complexity Low_complexity 1 44 0 402 284 209 9 chr11 30973874 30974085 -117809387 + L2 LINE L2 1766 2018 -1296 269 213 75 32 chr11 30974132 30974226 -117809246 + L2 LINE L2 2268 2365 -949 24 32 0 0 chr11 30974258 30974289 -117809183 + AT_rich Low_complexity Low_complexity 1 31 0 366 335 25 19 chr11 30974299 30974460 -117809012 + L2 LINE L2 3152 3313 0 228 267 128 12 chr11 30974793 30974879 -117808593 - MIR SINE MIR -126 136 41 21 36 0 0 chr11 30974883 30974911 -117808561 + AT_rich Low_complexity Low_complexity 1 28 0 17800 92 2 2 chr11 30975612 30978945 -117804527 + L1PA7 LINE L1 2819 6152 -2 24 0 0 0 chr11 30978945 30978969 -117804503 + AT_rich Low_complexity Low_complexity 1 24 0 1560 261 87 10 chr11 30980197 30980715 -117802757 + L1ME2 LINE L1 5390 5947 -215 363 270 36 7 chr11 30980756 30980893 -117802579 + L1ME2 LINE L1 6024 6164 0 328 281 49 20 chr11 30981639 30981786 -117801686 + L1ME LINE L1 5506 5665 -456 197 200 0 22 chr11 30982463 30982508 -117800964 - MIR3 SINE MIR -54 154 111 450 315 50 35 chr11 30983305 30983505 -117799967 - MIR SINE MIR 0 262 60 739 266 116 10 chr11 30983623 30983830 -117799642 - MIR SINE MIR -21 241 13 39 68 0 0 chr11 30984017 30984091 -117799381 + AT_rich Low_complexity Low_complexity 1 74 0 239 272 25 12 chr11 30984276 30984357 -117799115 + L2 LINE L2 3146 3227 -86 21 57 0 0 chr11 30984890 30984925 -117798547 + AT_rich Low_complexity Low_complexity 1 35 0 237 65 0 0 chr11 30985254 30985285 -117798187 + (CATA)n Simple_repeat Simple_repeat 2 32 0 13764 139 32 20 chr11 30985286 30987674 -117795798 - Tigger1 DNA MER2_type 0 2418 1 309 245 123 0 chr11 30988203 30988309 -117795163 - MER103 DNA DNA -12 154 36 27 0 0 0 chr11 30989969 30989996 -117793476 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr11 30990980 30991008 -117792464 + AT_rich Low_complexity Low_complexity 1 28 0 2127 119 3 7 chr11 30991030 30991333 -117792139 - AluSx SINE Alu -10 302 1 372 317 8 0 chr11 30991384 30991504 -117791968 + L1MEd LINE L1 45 165 -5954 649 257 52 24 chr11 30991641 30991851 -117791621 - MER97a DNA MER1_type? -677 217 2 503 313 110 67 chr11 30991873 30992502 -117790970 + L1MEd LINE L1 300 955 -5164 595 267 100 9 chr11 30992504 30992714 -117790758 - MIR SINE MIR -15 247 19 394 246 113 50 chr11 30992732 30992972 -117790500 + L1MEd LINE L1 1003 1257 -4862 227 129 14 71 chr11 30993767 30993837 -117789635 + T-rich Low_complexity Low_complexity 2 67 0 362 202 8 17 chr11 30993847 30993939 -117789533 - AluY SINE Alu -116 185 130 836 244 51 28 chr11 30994277 30994531 -117788941 - MIR SINE MIR 0 262 3 237 214 36 0 chr11 30994824 30994880 -117788592 - MER117 DNA MER1_type -134 63 6 245 273 61 50 chr11 30996141 30996240 -117787232 - MIR SINE MIR -98 164 65 660 158 41 47 chr11 30996278 30996449 -117787023 - Charlie1b DNA MER1_type 0 523 354 217 182 23 34 chr11 30996470 30996558 -117786914 + (TAA)n Simple_repeat Simple_repeat 2 88 0 1074 196 53 78 chr11 30996570 30996891 -117786581 - Charlie1b DNA MER1_type -210 313 1 1306 171 3 89 chr11 30996901 30997228 -117786244 - AluJo SINE Alu -13 299 1 4190 62 2 7 chr11 30999540 31000086 -117783386 - L1PA8 LINE L1 -3 6169 5627 192 300 100 12 chr11 31000890 31000970 -117782502 + MIR SINE MIR 53 139 -123 468 0 0 0 chr11 31001154 31001206 -117782266 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 435 141 47 0 chr11 31001999 31002084 -117781388 - L1MB3 LINE L1 -1 6182 6094 347 281 98 61 chr11 31002657 31002821 -117780651 - MIR3 SINE MIR -21 187 18 438 366 144 9 chr11 31002836 31003183 -117780289 + L2 LINE L2 2521 2914 -400 1018 75 0 0 chr11 31003380 31003514 -117779958 - L1PA6 LINE L1 -6 6148 6015 247 362 21 0 chr11 31003601 31003695 -117779777 - MIR3 SINE MIR -28 180 85 38 61 0 0 chr11 31004071 31004137 -117779335 + AT_rich Low_complexity Low_complexity 1 66 0 284 315 22 0 chr11 31004678 31004770 -117778702 - MIR3 SINE MIR -6 202 109 442 278 161 39 chr11 31004916 31005171 -117778301 - L2 LINE L2 -15 3298 3013 229 347 142 16 chr11 31006628 31006818 -117776654 + MIR SINE MIR 3 216 -46 2752 207 16 14 chr11 31006855 31007416 -117776056 - MER68 LTR ERV1 0 562 1 1707 174 10 3 chr11 31008257 31008556 -117774916 + AluJo SINE Alu 1 301 -11 270 248 97 69 chr11 31008561 31008706 -117774766 - MIR SINE MIR -66 196 48 1510 180 9 41 chr11 31009296 31009613 -117773859 - AluJo SINE Alu 0 312 6 187 225 0 25 chr11 31009656 31009696 -117773776 + L2 LINE L2 3184 3222 -91 229 240 17 6 chr11 31010129 31010223 -117773249 - L1MC/D LINE L1 -331 5790 5744 251 275 62 0 chr11 31010270 31010350 -117773122 - L1MC/D LINE L1 -474 5647 5563 2255 79 0 0 chr11 31010441 31010755 -117772717 - AluY SINE Alu 0 314 1 941 117 0 10 chr11 31011323 31011558 -117771914 + (C)n Simple_repeat Simple_repeat 1 414 0 223 227 133 27 chr11 31012251 31012326 -117771146 + L3 LINE CR1 1490 1572 -5 299 229 193 0 chr11 31012557 31012666 -117770806 + MIR3 SINE MIR 65 194 -14 246 337 81 45 chr11 31012968 31013004 -117770468 + L2 LINE L2 2655 2688 -626 180 0 0 0 chr11 31013004 31013024 -117770448 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 246 337 81 45 chr11 31013024 31013296 -117770176 + L2 LINE L2 2688 2974 -340 737 282 61 38 chr11 31013804 31014066 -117769406 + MLT1J LTR MaLR 1 268 -243 434 282 40 36 chr11 31014134 31014395 -117769077 + L2 LINE L2 2378 2956 -357 258 337 60 18 chr11 31014514 31014680 -117768792 - L2 LINE L2 -151 3162 2990 960 300 43 10 chr11 31014734 31015037 -117768435 - MLT1I LTR MaLR -51 358 46 316 250 39 16 chr11 31015337 31015465 -117768007 - L1ME LINE L1 -346 5775 5645 396 328 128 15 chr11 31015818 31016022 -117767450 + MIR SINE MIR 20 246 -16 195 100 0 0 chr11 31016653 31016683 -117766789 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 499 165 0 21 chr11 31016683 31016780 -117766692 + L1MB7 LINE L1 6071 6165 -19 211 328 0 0 chr11 31017316 31017377 -117766095 + L2 LINE L2 3211 3271 -1 23 33 0 0 chr11 31017898 31017928 -117765544 + AT_rich Low_complexity Low_complexity 1 30 0 292 354 77 19 chr11 31018560 31018871 -117764601 - MARNA DNA Mariner -169 417 89 391 300 78 18 chr11 31020354 31020800 -117762672 - L1MEc LINE L1 -4897 1487 1015 1533 155 77 19 chr11 31020836 31021159 -117762313 - MER2 DNA MER2_type -1 343 2 407 232 67 34 chr11 31021675 31021838 -117761634 - L1MEc LINE L1 -5905 467 194 1769 182 3 0 chr11 31022555 31022852 -117760620 + AluJb SINE Alu 1 298 -14 507 276 32 51 chr11 31022874 31023192 -117760280 - L1P1 LINE L1 -364 5757 5455 265 230 86 99 chr11 31023194 31023346 -117760126 - L1MC5 LINE L1 -52 7909 7760 1714 38 9 0 chr11 31023347 31023558 -117759914 + L1PA4 LINE L1 5943 6155 0 21 0 0 0 chr11 31023558 31023579 -117759893 + AT_rich Low_complexity Low_complexity 1 21 0 609 222 56 12 chr11 31023601 31023763 -117759709 + MER58 DNA MER1_type 20 188 -2232 320 160 80 60 chr11 31023842 31023942 -117759530 - L1MC5 LINE L1 -317 7644 7543 344 118 0 0 chr11 31023998 31024049 -117759423 - MADE1 DNA Mariner 0 80 30 2756 267 62 31 chr11 31024245 31025337 -117758135 - L2 LINE L2 -1 3312 2175 303 305 169 34 chr11 31025523 31026061 -117757411 - L1 LINE L1 -1134 5012 4402 23 68 0 0 chr11 31026133 31026177 -117757295 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr11 31027900 31027932 -117755540 + AT_rich Low_complexity Low_complexity 1 32 0 185 378 104 7 chr11 31027944 31028079 -117755393 + L2 LINE L2 2610 2757 -557 530 304 18 27 chr11 31028661 31028881 -117754591 - L1ME LINE L1 -341 5780 5563 217 244 0 0 chr11 31029058 31029103 -117754369 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 2188 121 0 6 chr11 31029869 31030182 -117753290 - AluSq SINE Alu 0 313 3 343 226 68 23 chr11 31030231 31030244 -117753228 - HAL1 LINE L1 -145 2362 2351 7748 13 23 0 chr11 31030244 31031170 -117752302 - L1PA3 LINE L1 0 6155 5228 343 226 68 23 chr11 31031170 31031289 -117752183 - HAL1 LINE L1 -156 2351 2224 37 23 0 0 chr11 31031435 31031479 -117751993 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr11 31031960 31031985 -117751487 + AT_rich Low_complexity Low_complexity 1 25 0 635 266 180 46 chr11 31032623 31032973 -117750499 - HAL1 LINE L1 -1847 660 264 28 79 0 0 chr11 31033066 31033129 -117750343 + AT_rich Low_complexity Low_complexity 1 63 0 276 53 0 0 chr11 31033235 31033273 -117750199 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 205 329 0 26 chr11 31033442 31033518 -117749954 + MIR SINE MIR 2 75 -187 866 313 133 17 chr11 31035178 31035866 -117747606 + L2 LINE L2 2551 3313 0 25 65 0 0 chr11 31036773 31036819 -117746653 + AT_rich Low_complexity Low_complexity 1 46 0 441 288 5 7 chr11 31037813 31037952 -117745520 - MIR SINE MIR -77 131 10 196 240 0 20 chr11 31038833 31038883 -117744589 - L2 LINE L2 -566 2748 2700 1232 190 132 29 chr11 31039351 31039662 -117743810 + MER2 DNA MER2_type 1 343 -1 336 193 12 0 chr11 31039784 31039867 -117743605 + L1PA16 LINE L1 6079 6162 -4 285 350 29 0 chr11 31041982 31042122 -117741350 + L1ME LINE L1 486 629 -5925 473 255 71 54 chr11 31042617 31042946 -117740526 + L1ME LINE L1 923 1457 -4968 10099 140 28 10 chr11 31042954 31045264 -117738208 - L1MA3 LINE L1 -1 6304 3939 22349 41 0 0 chr11 31045264 31048794 -117734678 - L1PA5 LINE L1 -4 6150 2619 10099 140 28 10 chr11 31048794 31049294 -117734178 - L1MA3 LINE L1 -2366 3939 3449 360 289 59 20 chr11 31049322 31049623 -117733849 + L1ME LINE L1 1341 1806 -4911 213 139 23 0 chr11 31050327 31050370 -117733102 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1783 141 46 12 chr11 31051187 31051513 -117731959 + MER44D DNA MER2_type 2 608 -1 214 248 106 75 chr11 31051753 31051914 -117731558 + L2 LINE L2 3127 3292 -21 180 0 0 0 chr11 31052153 31052173 -117731299 + (T)n Simple_repeat Simple_repeat 1 20 0 362 201 77 66 chr11 31052737 31052869 -117730603 - MIR SINE MIR -62 146 37 24 32 0 0 chr11 31054722 31054753 -117728719 + AT_rich Low_complexity Low_complexity 1 31 0 2971 132 72 13 chr11 31055017 31055488 -117727984 - MER1A DNA MER1_type 0 529 31 237 214 89 0 chr11 31055840 31055896 -117727576 + MIR3 SINE MIR 143 203 -5 637 286 21 11 chr11 31056345 31056534 -117726938 - L1ME3A LINE L1 -36 6134 5944 901 79 58 0 chr11 31056562 31056701 -117726771 - L1MA5 LINE L1 -3 6297 6151 25 51 0 0 chr11 31056709 31056748 -117726724 + AT_rich Low_complexity Low_complexity 1 39 0 702 12 0 0 chr11 31056844 31056924 -117726548 + MADE1 DNA Mariner 1 80 0 314 147 64 0 chr11 31056963 31057120 -117726352 + (TA)n Simple_repeat Simple_repeat 1 167 0 301 234 0 16 chr11 31057991 31058115 -117725357 + (TA)n Simple_repeat Simple_repeat 1 122 0 263 237 0 26 chr11 31058140 31058216 -117725256 + (TA)n Simple_repeat Simple_repeat 1 74 0 217 260 156 10 chr11 31058472 31058568 -117724904 - MIR SINE MIR 0 262 153 821 244 34 34 chr11 31058711 31058949 -117724523 + MER46C DNA MER2_type 86 323 -15 250 261 14 43 chr11 31059001 31059070 -117724402 - MIR SINE MIR -149 113 47 2248 115 0 6 chr11 31059308 31059621 -117723851 + AluSx SINE Alu 1 311 -1 1616 135 52 8 chr11 31060155 31060422 -117723050 - Tigger5 DNA MER2_type 0 2323 2045 375 98 0 0 chr11 31060411 31060462 -117723010 + Tigger5 DNA MER2_type 143 193 -2130 * 405 189 0 14 chr11 31060466 31060540 -117722932 + Tigger5 DNA MER2_type 2251 2323 0 21 0 0 0 chr11 31060586 31060607 -117722865 + AT_rich Low_complexity Low_complexity 1 21 0 661 236 27 67 chr11 31061985 31062210 -117721262 + MLT1K LTR MaLR 322 537 -51 2342 200 177 7 chr11 31062220 31062790 -117720682 - L1MD2 LINE L1 -18 6341 5675 1955 176 9 0 chr11 31063517 31063863 -117719609 - L1PB4 LINE L1 0 6156 5808 258 146 34 45 chr11 31063938 31064027 -117719445 + (TA)n Simple_repeat Simple_repeat 2 89 0 229 355 9 45 chr11 31066609 31066719 -117716753 + L2 LINE L2 3149 3254 -18 1164 211 61 64 chr11 31067574 31067935 -117715537 - MER21B LTR ERV1 -19 844 485 2048 189 32 11 chr11 31067939 31068373 -117715099 - MER65A LTR ERV1 -2 443 1 2058 235 11 6 chr11 31068373 31068841 -117714631 - MER65A-int LTR ERV1 0 4871 4402 1781 269 66 0 chr11 31068845 31069272 -117714200 - MER65A-int LTR ERV1 -813 4058 3604 256 180 82 45 chr11 31069285 31069431 -117714041 - MER65A-int LTR ERV1 -939 5392 5192 180 186 0 0 chr11 31069579 31069638 -117713834 + C-rich Low_complexity Low_complexity 1 59 0 248 229 0 21 chr11 31069693 31069789 -117713683 + (CCA)n Simple_repeat Simple_repeat 3 96 0 * 276 201 13 65 chr11 31069728 31069882 -117713590 + (CACCC)n Simple_repeat Simple_repeat 3 148 0 1220 206 95 68 chr11 31070138 31071960 -117711512 - MER65A-int LTR ERV1 -353 4527 1546 25 51 0 0 chr11 31071982 31072021 -117711451 + AT_rich Low_complexity Low_complexity 1 39 0 2722 180 61 33 chr11 31072074 31072892 -117710580 - MER65A-int LTR ERV1 -2377 2494 1654 1928 109 85 21 chr11 31072903 31073234 -117710238 - THE1B LTR MaLR -12 352 1 11164 99 19 1 chr11 31073234 31074786 -117708686 - THE1B-int LTR MaLR 0 1580 1 2301 105 33 30 chr11 31074786 31075149 -117708323 - THE1B LTR MaLR 0 364 1 3784 202 61 47 chr11 31075149 31076285 -117707187 - MER65A-int LTR ERV1 -3237 1634 483 543 244 19 91 chr11 31076295 31076615 -117706857 - MER65A-int LTR ERV1 -4493 378 82 2447 154 7 29 chr11 31076699 31077153 -117706319 - MER65A LTR ERV1 -1 444 1 971 280 25 64 chr11 31077199 31077635 -117705837 - MER21B LTR ERV1 -444 419 1 498 373 65 27 chr11 31077661 31077924 -117705548 - L3 LINE CR1 -11 1566 1294 1931 172 74 54 chr11 31077991 31078491 -117704981 + LTR54 LTR ERV1 1 510 0 236 265 88 20 chr11 31078554 31078656 -117704816 - MLT1L LTR MaLR 0 615 507 230 293 40 71 chr11 31078823 31078922 -117704550 + L2 LINE L2 3177 3272 0 22 70 0 0 chr11 31079151 31079194 -117704278 + AT_rich Low_complexity Low_complexity 1 43 0 276 252 233 39 chr11 31079290 31079393 -117704079 + MER5A DNA MER1_type 46 168 -21 1048 235 9 0 chr11 31079581 31079798 -117703674 - MER20 DNA MER1_type 0 219 1 14856 132 20 7 chr11 31079930 31082317 -117701155 - Tigger1 DNA MER2_type 0 2418 1 287 295 39 23 chr11 31082468 31082597 -117700875 - HAL1 LINE L1 -897 1610 1480 327 296 82 58 chr11 31083382 31083673 -117699799 - L1MEd LINE L1 -4189 2398 2101 1659 139 44 25 chr11 31083878 31084195 -117699277 - AluJb SINE Alu 0 328 7 302 293 178 44 chr11 31084206 31084431 -117699041 - HAL1 LINE L1 -887 1620 1366 260 249 100 2 chr11 31084445 31084549 -117698923 - L1MEd LINE L1 -4867 1529 1423 1157 214 59 70 chr11 31084742 31085200 -117698272 - MLT2C2 LTR ERVL -11 453 1 1025 214 24 20 chr11 31085209 31085559 -117697913 - HsTC2 DNA Tc2 -207 1691 1284 249 304 51 22 chr11 31085574 31085712 -117697760 - HsTC2 DNA Tc2 -1751 147 6 300 271 42 31 chr11 31085807 31085903 -117697569 - L1MEd LINE L1 -5147 1262 1166 1719 177 34 71 chr11 31086132 31086535 -117696937 - L1MA4 LINE L1 0 6300 5790 369 0 0 0 chr11 31086535 31086576 -117696896 + (TG)n Simple_repeat Simple_repeat 2 42 0 1719 177 34 71 chr11 31086576 31086646 -117696826 - L1MA4 LINE L1 -510 5790 5719 200 320 20 72 chr11 31086651 31086804 -117696668 + MIR SINE MIR 117 261 -1 315 0 0 0 chr11 31087529 31087564 -117695908 + (A)n Simple_repeat Simple_repeat 1 35 0 239 293 32 73 chr11 31088444 31088567 -117694905 - L2 LINE L2 0 3272 3155 688 268 18 6 chr11 31088740 31088908 -117694564 - MIR SINE MIR -25 237 68 504 276 89 56 chr11 31088917 31089312 -117694160 - MLT1K LTR MaLR -4 584 177 237 308 33 33 chr11 31089314 31089434 -117694038 + MIR SINE MIR 143 262 0 2184 154 3 0 chr11 31089452 31089797 -117693675 + MER7A DNA MER2_type 2 345 -1 727 318 132 6 chr11 31089826 31090159 -117693313 - L2 LINE L2 0 3313 2939 183 322 56 56 chr11 31091708 31091851 -117691621 + L2 LINE L2 3171 3313 0 397 377 36 0 chr11 31092352 31092519 -117690953 + MIR SINE MIR 20 192 -70 193 226 0 38 chr11 31093825 31093878 -117689594 - MIR SINE MIR -71 191 141 378 319 9 0 chr11 31094207 31094320 -117689152 + MIR3 SINE MIR 65 178 -30 246 276 0 5 chr11 31094644 31094719 -117688753 - MIR SINE MIR -81 127 54 428 276 92 6 chr11 31094957 31095120 -117688352 + Charlie8 DNA MER1_type 47 223 -2194 402 329 64 14 chr11 31095120 31095260 -117688212 - MER91A DNA MER1_type -14 182 36 276 229 14 0 chr11 31095449 31095519 -117687953 + Charlie8 DNA MER1_type 2347 2417 0 1992 194 22 29 chr11 31096000 31096178 -117687294 + MLT1C LTR MaLR 1 179 -288 2066 114 4 4 chr11 31096178 31096479 -117686993 + AluSx SINE Alu 1 301 0 1992 194 22 29 chr11 31096479 31096752 -117686720 + MLT1C LTR MaLR 179 450 -17 207 269 0 0 chr11 31096938 31097068 -117686404 + G-rich Low_complexity Low_complexity 1 130 0 197 296 0 0 chr11 31097699 31097743 -117685729 + MIR SINE MIR 89 132 -76 305 309 0 0 chr11 31098106 31098190 -117685282 + CT-rich Low_complexity Low_complexity 2 85 0 242 318 126 45 chr11 31099102 31099325 -117684147 - MIR SINE MIR -6 256 16 180 234 0 0 chr11 31099354 31099401 -117684071 + (CA)n Simple_repeat Simple_repeat 2 48 0 530 224 16 0 chr11 31099724 31099849 -117683623 + MLT1F1 LTR MaLR 5 131 -436 1330 212 88 15 chr11 31099864 31100260 -117683212 + L1MD3 LINE L1 7435 7859 -136 517 160 76 8 chr11 31100384 31100515 -117682957 + L1MD3 LINE L1 7848 7987 -8 186 43 0 0 chr11 31100519 31100542 -117682930 + (T)n Simple_repeat Simple_repeat 1 23 0 206 365 65 0 chr11 31100569 31100676 -117682796 - L2 LINE L2 -286 2986 2873 1289 205 51 70 chr11 31101526 31101896 -117681576 - MLT1A1 LTR MaLR -2 363 1 935 255 129 54 chr11 31102083 31102101 -117681371 - L2 LINE L2 -1 3312 3297 2354 116 0 0 chr11 31102101 31102411 -117681061 + AluSq SINE Alu 1 310 -3 935 255 129 54 chr11 31102411 31102985 -117680487 - L2 LINE L2 -16 3297 2630 314 296 11 45 chr11 31103697 31103876 -117679596 + G-rich Low_complexity Low_complexity 2 174 0 318 282 12 0 chr11 31104313 31104398 -117679074 - MIR3 SINE MIR -11 197 112 762 274 47 35 chr11 31104424 31104679 -117678793 + MIR SINE MIR 1 258 -4 220 259 12 59 chr11 31106092 31106177 -117677295 - MIR SINE MIR -3 259 179 835 167 0 0 chr11 31106210 31106336 -117677136 - FLAM_C SINE Alu -17 126 1 407 375 0 0 chr11 31106348 31106508 -117676964 - MIR SINE MIR -81 181 22 1920 134 10 10 chr11 31106570 31106869 -117676603 + AluSx SINE Alu 1 299 -13 233 293 12 24 chr11 31107155 31107237 -117676235 + L2 LINE L2 3232 3312 -1 332 287 23 32 chr11 31107370 31107473 -117675999 - MIR SINE MIR -104 104 20 366 265 179 0 chr11 31107553 31107670 -117675802 - MIR3 SINE MIR -62 146 9 347 235 20 0 chr11 31107835 31107933 -117675539 - MIR3 SINE MIR -4 204 105 34 24 0 0 chr11 31108476 31108517 -117674955 + AT_rich Low_complexity Low_complexity 1 41 0 243 263 113 75 chr11 31108794 31108856 -117674616 + MIR SINE MIR 20 78 -184 2045 120 18 82 chr11 31108856 31109256 -117674216 - THE1C LTR MaLR -1 374 1 243 263 113 75 chr11 31109256 31109379 -117674093 + MIR SINE MIR 78 212 -50 538 293 88 26 chr11 31109452 31109684 -117673788 + MIR SINE MIR 9 251 -11 2314 116 129 5 chr11 31109888 31110269 -117673203 + MSTA LTR MaLR 1 428 0 284 392 19 24 chr11 31110409 31110618 -117672854 - L2 LINE L2 -506 2808 2601 1700 251 27 47 chr11 31111354 31111867 -117671605 - LTR33 LTR ERVL 0 521 19 291 294 111 8 chr11 31112090 31112216 -117671256 + MIR SINE MIR 88 226 -36 317 250 50 0 chr11 31112520 31112600 -117670872 + L2 LINE L2 3180 3263 -50 1790 292 129 22 chr11 31113616 31114157 -117669315 + L2 LINE L2 2244 2725 -588 875 87 79 0 chr11 31114157 31114284 -117669188 + MER85 DNA T2_type 3 139 0 1790 292 129 22 chr11 31114284 31114616 -117668856 + L2 LINE L2 2725 3244 -69 309 261 27 9 chr11 31115156 31115267 -117668205 + MLT1I LTR MaLR 48 160 -249 411 292 8 0 chr11 31115342 31115462 -117668010 + MLT1I LTR MaLR 285 405 -4 196 325 175 0 chr11 31115549 31115629 -117667843 + L2 LINE L2 3171 3264 -8 354 344 13 13 chr11 31116603 31116757 -117666715 + L2 LINE L2 3159 3312 -1 633 311 29 0 chr11 31117320 31117526 -117665946 + MIR SINE MIR 47 258 -4 827 229 112 87 chr11 31117615 31118109 -117665363 + MLT1H1 LTR MaLR 50 553 -2 489 325 10 41 chr11 31119056 31119250 -117664222 + MIR SINE MIR 5 192 -70 802 158 0 15 chr11 31119260 31119393 -117664079 + FLAM_C SINE Alu 1 131 -12 828 223 59 25 chr11 31119694 31119896 -117663576 - MIR SINE MIR -25 237 29 230 362 147 9 chr11 31119915 31120031 -117663441 + L2 LINE L2 3133 3264 -8 235 254 73 0 chr11 31120579 31120634 -117662838 + MIR SINE MIR 132 190 -72 314 304 68 68 chr11 31120697 31120888 -117662584 + MIR SINE MIR 20 210 -52 344 161 16 0 chr11 31121220 31121282 -117662190 - MIR SINE MIR -86 122 60 2401 103 0 0 chr11 31121332 31121642 -117661830 - AluSx SINE Alu -1 311 2 679 258 82 6 chr11 31121880 31122062 -117661410 - MIR SINE MIR -20 242 47 252 0 0 0 chr11 31122511 31122539 -117660933 + (TTA)n Simple_repeat Simple_repeat 3 30 0 45070 38 0 2 chr11 31122539 31128681 -117654791 - L1PA3 LINE L1 -18 6137 8 2097 262 103 32 chr11 31128786 31129360 -117654112 + MER20B DNA MER1_type 2 639 -144 185 81 0 27 chr11 31129360 31129397 -117654075 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 2097 262 103 32 chr11 31129397 31129543 -117653929 + MER20B DNA MER1_type 639 773 -10 496 201 75 44 chr11 31129778 31129937 -117653535 + MER103 DNA DNA 1 164 -2 436 322 88 57 chr11 31130133 31130484 -117652988 + MLT1K LTR MaLR 12 373 -215 1963 137 20 0 chr11 31131052 31131222 -117652250 - AluSx SINE Alu -13 299 119 207 0 0 0 chr11 31131222 31131245 -117652227 + (TG)n Simple_repeat Simple_repeat 2 24 0 1963 137 20 0 chr11 31131245 31131367 -117652105 - AluSx SINE Alu -193 119 1 261 139 0 0 chr11 31131816 31131859 -117651613 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 366 313 55 37 chr11 31131943 31132106 -117651366 + MIR SINE MIR 1 166 -96 2322 168 12 16 chr11 31132106 31132535 -117650937 + L1MC3 LINE L1 7344 7770 -15 231 273 23 23 chr11 31132646 31132734 -117650738 + MIR3 SINE MIR 106 193 -15 262 233 137 0 chr11 31134221 31134294 -117649178 + L2 LINE L2 3230 3312 -1 190 300 0 17 chr11 31134402 31134462 -117649010 - L2 LINE L2 0 3313 3255 231 320 13 13 chr11 31134487 31134565 -117648907 + MER5B DNA MER1_type 64 141 -37 3778 129 34 0 chr11 31134630 31135166 -117648306 + MER41A LTR ERV1 1 554 0 2674 161 29 5 chr11 31135166 31135612 -117647860 + MER41A-int LTR ERV1 1 457 -7299 1419 84 31 0 chr11 31135614 31135805 -117647667 + MER41A-int LTR ERV1 1390 1586 -4360 227 328 0 15 chr11 31135805 31135872 -117647600 + tRNA-Glu-GAG tRNA tRNA 7 72 -3 518 148 0 0 chr11 31135876 31135964 -117647508 + MER41A-int LTR ERV1 753 840 -4377 850 85 0 8 chr11 31135966 31136084 -117647388 + MER41A-int LTR ERV1 1901 2017 -3929 * 4800 123 71 1 chr11 31136076 31136809 -117646663 + MER41A-int LTR ERV1 2163 2946 -3000 2856 138 89 31 chr11 31136793 31137378 -117646094 + MER41A-int LTR ERV1 2855 3473 -1542 * 9494 95 26 6 chr11 31137375 31138705 -117644767 + MER41A-int LTR ERV1 4590 5946 0 3889 101 11 2 chr11 31138706 31139230 -117644242 + MER41A LTR ERV1 3 531 -23 2197 81 14 11 chr11 31139443 31139726 -117643746 + AluSc SINE Alu 9 292 -17 23 33 0 0 chr11 31140165 31140195 -117643277 + AT_rich Low_complexity Low_complexity 1 30 0 2288 238 41 29 chr11 31140275 31140855 -117642617 + MER69 DNA AcHobo 1 587 -1939 478 196 29 0 chr11 31140841 31140943 -117642529 + MER69 DNA AcHobo 2036 2140 -386 * 374 105 0 0 chr11 31141657 31141714 -117641758 - MLT2B1 LTR ERVL 0 520 464 285 98 0 0 chr11 31141723 31141764 -117641708 + (CA)n Simple_repeat Simple_repeat 2 42 0 2095 190 55 47 chr11 31141779 31142252 -117641220 - MLT2B1 LTR ERVL -39 481 5 472 229 29 0 chr11 31142445 31142550 -117640922 + MIR SINE MIR 31 138 -124 2266 93 3 3 chr11 31142646 31142936 -117640536 - AluSc SINE Alu -19 290 1 2673 130 47 5 chr11 31143033 31143440 -117640032 + MSTA LTR MaLR 5 428 0 807 269 45 21 chr11 31144040 31144282 -117639190 - MIR SINE MIR -7 255 8 532 305 13 0 chr11 31144651 31144802 -117638670 + L3 LINE CR1 1424 1576 -1 429 279 137 16 chr11 31144816 31145006 -117638466 - LTR50 LTR ERVL -190 605 393 4829 211 89 42 chr11 31145043 31147038 -117636434 + L1MD3 LINE L1 3797 5403 -743 932 114 8 0 chr11 31147044 31147175 -117636297 + AluJb SINE Alu 1 132 -180 690 267 0 26 chr11 31147176 31147367 -117636105 + L1ME2 LINE L1 5860 6045 -119 1286 123 44 0 chr11 31147367 31147571 -117635901 - MLT1B LTR MaLR -177 213 1 1739 179 3 3 chr11 31147688 31147990 -117635482 + AluJo SINE Alu 1 302 -10 885 210 20 115 chr11 31149026 31149182 -117634290 + MER45C DNA AcHobo 726 851 -730 1857 153 10 10 chr11 31149182 31149490 -117633982 - AluJb SINE Alu -4 308 1 885 210 20 115 chr11 31149490 31149585 -117633887 + MER45C DNA AcHobo 851 953 0 494 261 14 14 chr11 31149926 31150065 -117633407 + MIR SINE MIR 32 177 -31 211 219 0 62 chr11 31151272 31151336 -117632136 + L2 LINE L2 3254 3313 0 344 336 9 58 chr11 31151486 31151709 -117631763 + L2 LINE L2 2550 2761 -553 2164 123 89 60 chr11 31151971 31152165 -117631307 + MSTA LTR MaLR 1 188 -240 2048 120 0 7 chr11 31152165 31152468 -117631004 + AluSx SINE Alu 1 301 0 2164 123 89 60 chr11 31152468 31152688 -117630784 + MSTA LTR MaLR 188 428 0 418 323 93 56 chr11 31152754 31152939 -117630533 + L2 LINE L2 2773 2950 -322 590 309 74 8 chr11 31152939 31153182 -117630290 - MIR SINE MIR -2 260 2 418 323 93 56 chr11 31153182 31153464 -117630008 + L2 LINE L2 2950 3267 -5 395 250 258 23 chr11 31153793 31154175 -117629297 - MLT1H1 LTR MaLR -2 593 104 290 330 0 0 chr11 31154237 31154328 -117629144 - MLT1H1 LTR MaLR -460 95 5 481 314 238 0 chr11 31154552 31154737 -117628735 - MIR SINE MIR 0 262 34 417 324 82 0 chr11 31155127 31155297 -117628175 + L2 LINE L2 3086 3269 -3 235 241 0 35 chr11 31155338 31155396 -117628076 + MIR SINE MIR 17 72 -136 25 31 0 0 chr11 31155758 31155790 -117627682 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr11 31155797 31155832 -117627640 + AT_rich Low_complexity Low_complexity 1 35 0 693 234 141 35 chr11 31156073 31156300 -117627172 - MIR SINE MIR -5 257 7 252 195 91 26 chr11 31156613 31156690 -117626782 - MER103 DNA DNA -71 95 14 355 301 106 0 chr11 31156826 31157025 -117626447 + L2 LINE L2 2832 3051 -221 505 277 27 96 chr11 31157181 31157293 -117626179 - MIR SINE MIR -17 245 154 1730 192 0 26 chr11 31157293 31157595 -117625877 - AluJb SINE Alu -16 296 3 505 277 27 96 chr11 31157595 31157702 -117625770 - MIR SINE MIR -108 154 41 790 220 72 68 chr11 31158108 31158344 -117625128 - MIR SINE MIR -13 249 13 690 315 36 9 chr11 31159063 31159282 -117624190 + MIR SINE MIR 2 226 -36 314 290 19 9 chr11 31159887 31159994 -117623478 - MLT1G1 LTR MaLR -481 114 7 1537 170 111 3 chr11 31160036 31160342 -117623130 + MER44D DNA MER2_type 1 609 0 429 281 31 16 chr11 31160449 31160577 -117622895 + MIR SINE MIR 17 146 -62 373 327 9 0 chr11 31160723 31160836 -117622636 - MER94 DNA DNA -14 120 7 699 147 47 6 chr11 31211229 31211399 -117572073 + CT-rich Low_complexity Low_complexity 2 178 0 446 306 122 5 chr11 31211610 31211806 -117571666 + L2 LINE L2 2721 2939 -375 770 225 0 0 chr11 31211828 31211970 -117571502 - AluJb SINE Alu -31 281 140 694 261 209 34 chr11 31211973 31212299 -117571173 + L2 LINE L2 2929 3311 -2 386 267 117 8 chr11 31212427 31212547 -117570925 - MIR SINE MIR -13 249 117 229 282 24 35 chr11 31212541 31212626 -117570846 + MIR3 SINE MIR 115 198 -10 * 366 284 28 21 chr11 31213094 31213278 -117570194 - MIR3 SINE MIR -9 199 13 543 257 35 14 chr11 31213686 31213830 -117569642 + MIR SINE MIR 47 193 -69 244 209 12 116 chr11 31213831 31213917 -117569555 - MIR SINE MIR -9 253 177 2364 198 42 12 chr11 31214346 31214921 -117568551 + L1MC4 LINE L1 7309 7900 -142 304 135 0 0 chr11 31214926 31214978 -117568494 + L1MC4 LINE L1 7989 8040 -2 348 289 81 57 chr11 31215001 31215240 -117568232 - L1ME3A LINE L1 -302 5868 5621 2060 211 77 6 chr11 31215240 31215708 -117567764 - MLT1D LTR MaLR -2 503 3 348 289 81 57 chr11 31215708 31215750 -117567722 - L1ME3A LINE L1 -549 5621 5581 438 273 41 72 chr11 31215884 31215931 -117567541 - MIR SINE MIR -71 191 144 342 203 13 0 chr11 31215931 31216010 -117567462 + MER116 DNA Mariner 1 80 0 438 273 41 72 chr11 31216010 31216156 -117567316 - MIR SINE MIR -118 144 4 267 304 16 40 chr11 31216814 31216939 -117566533 + MIR3 SINE MIR 82 203 -5 304 318 48 18 chr11 31217171 31217570 -117565902 + L1MC/D LINE L1 4370 4780 -1366 1888 109 0 32 chr11 31217806 31218091 -117565381 + AluSq SINE Alu 32 307 -6 21 0 0 0 chr11 31218139 31218160 -117565312 + AT_rich Low_complexity Low_complexity 1 21 0 445 249 42 22 chr11 31218179 31218449 -117565023 + L1MC/D LINE L1 5143 5425 -743 243 170 0 0 chr11 31219215 31219262 -117564210 + GA-rich Low_complexity Low_complexity 1 47 0 218 228 18 0 chr11 31219299 31219356 -117564116 + GA-rich Low_complexity Low_complexity 1 58 0 269 227 0 13 chr11 31221383 31221458 -117562014 + L1MC/D LINE L1 5412 5485 -2323 438 289 23 16 chr11 31221533 31221661 -117561811 + MIR SINE MIR 15 143 -119 486 266 131 23 chr11 31221721 31221935 -117561537 - MIR SINE MIR -25 237 1 186 388 31 20 chr11 31222759 31222857 -117560615 - L2 LINE L2 -38 3234 3136 276 315 11 22 chr11 31222990 31223079 -117560393 + MER5B DNA MER1_type 17 104 -74 664 274 78 113 chr11 31223601 31224098 -117559374 - L3 LINE CR1 -15 1562 1083 382 313 26 72 chr11 31224196 31224331 -117559141 - MIR SINE MIR -66 142 66 2109 172 10 40 chr11 31224331 31224733 -117558739 + MLT1B LTR MaLR 1 390 0 382 313 26 72 chr11 31224733 31224778 -117558694 - MIR SINE MIR -142 66 20 2287 108 74 14 chr11 31225493 31225844 -117557628 + THE1C LTR MaLR 4 375 0 376 305 120 35 chr11 31225929 31226129 -117557343 + MIR SINE MIR 17 233 -29 2184 119 0 0 chr11 31226130 31226432 -117557040 - AluSg SINE Alu -8 302 1 700 281 91 13 chr11 31226451 31226682 -117556790 - MIR SINE MIR -10 252 4 361 298 133 6 chr11 31226710 31226868 -117556604 + MIR SINE MIR 74 251 -11 198 322 17 0 chr11 31227527 31227586 -117555886 + MIR SINE MIR 32 91 -117 1049 227 23 9 chr11 31227594 31227810 -117555662 - MER58A DNA MER1_type 0 224 6 413 259 229 0 chr11 31227892 31228058 -117555414 + MIR SINE MIR 2 205 -57 1396 180 90 37 chr11 31228075 31228398 -117555074 - MLT1A1 LTR MaLR -2 363 24 738 242 99 19 chr11 31228487 31228698 -117554774 + MIR SINE MIR 9 236 -26 597 247 74 58 chr11 31228804 31229168 -117554304 - L1ME4a LINE L1 -184 5937 5568 446 109 0 0 chr11 31229168 31229232 -117554240 - MSTD LTR MaLR 0 396 333 1087 161 54 40 chr11 31229245 31229468 -117554004 - MSTD LTR MaLR -170 226 1 426 297 21 67 chr11 31230085 31230324 -117553148 + MIR SINE MIR 21 248 -14 538 237 25 89 chr11 31230549 31230785 -117552687 - L1ME LINE L1 -375 5746 5526 371 163 0 23 chr11 31230948 31231034 -117552438 + GA-rich Low_complexity Low_complexity 2 85 0 362 294 75 60 chr11 31231930 31232131 -117551341 + MIR SINE MIR 21 224 -38 284 373 45 0 chr11 31233023 31233133 -117550339 + L2 LINE L2 3112 3226 -46 216 67 0 0 chr11 31233137 31233167 -117550305 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 331 331 102 25 chr11 31233292 31233449 -117550023 - L2 LINE L2 0 3272 3104 365 320 90 34 chr11 31234508 31234742 -117548730 - MIR SINE MIR -9 253 7 416 241 145 36 chr11 31234765 31234931 -117548541 + MIR SINE MIR 79 262 0 288 368 32 32 chr11 31235361 31235486 -117547986 - L2 LINE L2 -23 3249 3125 191 294 109 25 chr11 31236599 31236718 -117546754 + MIR3 SINE MIR 32 160 -48 235 298 85 64 chr11 31236733 31236874 -117546598 - MER5A DNA MER1_type -24 165 22 2735 207 23 15 chr11 31237008 31237529 -117545943 - MLT1F LTR MaLR -2 540 16 429 335 97 6 chr11 31237923 31238099 -117545373 - MIR SINE MIR -37 225 34 230 288 41 27 chr11 31238739 31238812 -117544660 - MIR SINE MIR -21 241 168 181 324 15 15 chr11 31238869 31238937 -117544535 - MIR3 SINE MIR -7 201 134 246 297 184 0 chr11 31239348 31239475 -117543997 + MIR SINE MIR 2 149 -62 451 309 63 0 chr11 31240050 31240176 -117543296 + MIR SINE MIR 108 241 -21 221 293 17 0 chr11 31240198 31240256 -117543216 + L2 LINE L2 3211 3269 -3 249 262 224 9 chr11 31240508 31240615 -117542857 - MIR SINE MIR -60 148 19 403 188 70 10 chr11 31241058 31241158 -117542314 + MER21B LTR ERV1 3 106 -757 * 469 169 0 0 chr11 31241156 31241227 -117542245 + MER21B LTR ERV1 19 89 -774 3446 198 93 7 chr11 31241228 31241977 -117541495 + MER21B LTR ERV1 41 854 -9 415 253 0 96 chr11 31242142 31242288 -117541184 + MIR SINE MIR 53 184 -78 2034 164 49 0 chr11 31242301 31242630 -117540842 - MER7A DNA MER2_type -2 344 2 183 324 27 18 chr11 31243182 31243293 -117540179 + L3b LINE CR1 1219 1330 -253 949 298 8 0 chr11 31243336 31243594 -117539878 + MIR SINE MIR 1 260 -2 2181 120 23 0 chr11 31243996 31244295 -117539177 - AluSx SINE Alu -2 310 5 248 156 0 44 chr11 31245370 31245415 -117538057 + MLT2A2 LTR ERVL 93 135 -318 533 210 154 43 chr11 31245960 31246122 -117537350 - MER5A DNA MER1_type -6 183 4 239 276 35 69 chr11 31246161 31246248 -117537224 - MER5B DNA MER1_type -58 120 37 2098 142 24 35 chr11 31246537 31246910 -117536562 + MLT1B LTR MaLR 22 390 0 346 327 9 0 chr11 31246975 31247088 -117536384 + MIR3 SINE MIR 65 178 -30 312 340 34 48 chr11 31247381 31247528 -117535944 - MIR3 SINE MIR -46 162 18 2208 109 118 12 chr11 31248708 31249037 -117534435 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 31249734 31249755 -117533717 + AT_rich Low_complexity Low_complexity 1 21 0 428 313 84 69 chr11 31249959 31250291 -117533181 - L2 LINE L2 0 3272 2936 237 324 0 0 chr11 31251844 31251915 -117531557 - L2 LINE L2 -2 3311 3241 416 253 27 163 chr11 31252650 31252907 -117530565 - MIR SINE MIR 0 262 41 305 238 248 0 chr11 31253002 31253107 -117530365 - MIR SINE MIR -62 146 16 28 0 0 0 chr11 31254257 31254285 -117529187 + AT_rich Low_complexity Low_complexity 1 28 0 586 184 0 0 chr11 31254365 31254468 -117529004 - L1MA10 LINE L1 -37 6297 6195 199 308 128 0 chr11 31254499 31254577 -117528895 + MIR SINE MIR 78 165 -97 2498 39 0 0 chr11 31254577 31254860 -117528612 + AluY SINE Alu 1 283 -28 760 141 28 11 chr11 31255006 31255183 -117528289 + GA-rich Low_complexity Low_complexity 1 180 0 1367 261 64 50 chr11 31255185 31255744 -117527728 - MLT1F1 LTR MaLR 0 567 1 2677 183 24 36 chr11 31255986 31256489 -117526983 + MLT1D LTR MaLR 5 501 -4 29 0 0 0 chr11 31256571 31256600 -117526872 + AT_rich Low_complexity Low_complexity 1 29 0 313 265 143 0 chr11 31256813 31256911 -117526561 - L2 LINE L2 -6 3307 3196 240 291 74 27 chr11 31256944 31256989 -117526483 - L2 LINE L2 -552 2762 2721 1774 159 22 12 chr11 31256989 31257310 -117526162 + MER33 DNA MER1_type 1 324 0 240 291 74 27 chr11 31257310 31257412 -117526060 - L2 LINE L2 -593 2721 2608 277 292 99 19 chr11 31259478 31259639 -117523833 - MLT1L LTR MaLR -12 603 430 477 259 59 71 chr11 31259708 31259947 -117523525 - MLT1L LTR MaLR -289 326 91 513 263 63 26 chr11 31260246 31260436 -117523036 - MIR SINE MIR -15 247 51 1101 320 143 32 chr11 31260485 31261667 -117521805 - L2 LINE L2 -49 3264 1948 1716 273 88 28 chr11 31261674 31262344 -117521128 + HAL1 LINE L1 1323 2032 -475 542 247 56 6 chr11 31262362 31262540 -117520932 - LTR37A LTR ERV1 0 426 240 2279 204 59 33 chr11 31262589 31263207 -117520265 - MLT1E2 LTR MaLR -2 624 1 371 258 45 51 chr11 31263211 31263389 -117520083 - LTR37A LTR ERV1 -242 184 8 805 217 111 57 chr11 31263397 31263747 -117519725 + HAL1 LINE L1 2067 2435 -72 343 252 156 7 chr11 31264067 31264202 -117519270 - MIR SINE MIR -10 252 98 553 250 101 27 chr11 31264217 31264405 -117519067 - MIR SINE MIR 0 262 61 264 278 83 75 chr11 31264815 31264948 -117518524 + MLT1K LTR MaLR 253 386 -202 2221 164 15 22 chr11 31265394 31265796 -117517676 + L1MA7 LINE L1 5578 5976 -315 357 81 129 0 chr11 31265831 31265893 -117517579 + L1MA7 LINE L1 6211 6280 -11 354 267 0 0 chr11 31265918 31265993 -117517479 - MER5A DNA MER1_type -114 75 1 725 137 16 33 chr11 31268335 31268517 -117514955 + GA-rich Low_complexity Low_complexity 2 180 0 302 328 8 42 chr11 31268918 31269037 -117514435 + L2 LINE L2 3199 3313 0 756 268 48 10 chr11 31269677 31269886 -117513586 - MIR SINE MIR -35 227 11 658 167 24 8 chr11 31269865 31269991 -117513481 - L2 LINE L2 0 3313 3186 * 321 154 15 15 chr11 31270556 31270621 -117512851 - L2 LINE L2 -1 3271 3207 2063 202 31 49 chr11 31270625 31271139 -117512333 + MLT1D LTR MaLR 1 505 0 377 322 17 63 chr11 31271208 31271382 -117512090 + L2 LINE L2 3101 3266 -6 1925 128 24 0 chr11 31271382 31271679 -117511793 + AluSx SINE Alu 1 304 -8 202 320 244 13 chr11 31272160 31272238 -117511234 - L2 LINE L2 -43 3229 3134 526 267 12 25 chr11 31272941 31273102 -117510370 + MIR SINE MIR 14 172 -90 341 265 12 0 chr11 31273301 31273384 -117510088 - L2 LINE L2 0 3272 3189 238 429 0 0 chr11 31273383 31273467 -117510005 + L2 LINE L2 3140 3223 -49 * 1150 147 11 0 chr11 31273496 31273686 -117509786 - L1MA4A LINE L1 0 6303 6112 216 0 0 0 chr11 31273686 31273710 -117509762 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2134 122 0 0 chr11 31273710 31273989 -117509483 - AluSg SINE Alu -31 279 1 29 60 0 0 chr11 31274015 31274065 -117509407 + AT_rich Low_complexity Low_complexity 1 50 0 253 289 81 24 chr11 31274138 31274349 -117509123 - L1M2 LINE L1 -767 5545 5323 390 349 33 40 chr11 31274349 31274647 -117508825 + L1ME1 LINE L1 5626 5881 -285 616 310 56 15 chr11 31275816 31276013 -117507459 - MIR SINE MIR -35 227 23 744 300 99 25 chr11 31276821 31277064 -117506408 + MIR SINE MIR 2 262 0 190 288 25 12 chr11 31277072 31277152 -117506320 + MIR SINE MIR 136 216 -46 1058 231 32 12 chr11 31277173 31277424 -117506048 + L2 LINE L2 2432 2687 -627 1537 222 119 128 chr11 31277469 31277857 -117505615 - L1MC4a LINE L1 0 7808 7418 930 69 0 0 chr11 31277857 31277973 -117505499 - AluSp/q SINE Alu -8 305 190 1537 222 119 128 chr11 31277973 31278320 -117505152 - L1MC4a LINE L1 -390 7418 7070 279 93 0 0 chr11 31278320 31278363 -117505109 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1537 222 119 128 chr11 31278363 31278724 -117504748 - L1MC4a LINE L1 -738 7070 6606 955 265 143 25 chr11 31278744 31279295 -117504177 + L2 LINE L2 2697 3313 0 305 279 83 106 chr11 31279300 31279554 -117503918 + MIR SINE MIR 13 260 -2 204 40 0 0 chr11 31280801 31280826 -117502646 + (CA)n Simple_repeat Simple_repeat 1 25 0 2378 156 5 26 chr11 31280868 31281514 -117501958 + L1PB3 LINE L1 4810 5447 -704 2587 140 5 29 chr11 31281514 31281955 -117501517 + L1PB3 LINE L1 5723 6154 0 531 220 21 43 chr11 31282019 31282160 -117501312 + MIR SINE MIR 28 165 -97 294 182 18 0 chr11 31282748 31282803 -117500669 + MER103 DNA DNA 62 117 -49 340 265 90 60 chr11 31282882 31283048 -117500424 + MIR SINE MIR 6 176 -86 557 188 168 48 chr11 31283174 31283297 -117500175 + MER33 DNA MER1_type 1 108 -2477 330 26 0 0 chr11 31283297 31283336 -117500136 + (CA)n Simple_repeat Simple_repeat 2 40 0 557 188 168 48 chr11 31283336 31283420 -117500052 + MER33 DNA MER1_type 108 233 -91 295 229 0 19 chr11 31284398 31284503 -117498969 + GA-rich Low_complexity Low_complexity 3 105 0 10941 127 29 14 chr11 31286425 31288267 -117495205 - Tigger1 DNA MER2_type 0 2418 548 807 289 135 53 chr11 31288619 31289173 -117494299 - L2 LINE L2 0 3313 2693 2179 127 3 0 chr11 31289173 31289481 -117493991 - AluSx SINE Alu -3 309 1 807 289 135 53 chr11 31289481 31289711 -117493761 - L2 LINE L2 -620 2693 2483 580 238 12 19 chr11 31289907 31290067 -117493405 + L2 LINE L2 3148 3306 -7 736 255 118 10 chr11 31290141 31290345 -117493127 - MIR SINE MIR 0 262 37 276 287 23 0 chr11 31291010 31291097 -117492375 + MIR SINE MIR 174 262 0 416 303 66 71 chr11 31291373 31291584 -117491888 + L2 LINE L2 3063 3272 0 347 299 199 17 chr11 31291618 31291859 -117491613 - L3 LINE CR1 -73 1504 1220 298 343 97 46 chr11 31292062 31292453 -117491019 - MLT1K LTR MaLR -31 557 147 231 274 245 0 chr11 31292627 31292733 -117490739 + L2 LINE L2 3182 3313 0 204 211 0 99 chr11 31292746 31292817 -117490655 - L3 LINE CR1 -352 1225 1162 184 233 223 0 chr11 31292875 31292978 -117490494 + MIR SINE MIR 87 212 -50 195 121 30 0 chr11 31293371 31293404 -117490068 + L2 LINE L2 3264 3297 -16 720 141 0 0 chr11 31293587 31293708 -117489764 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 387 263 10 20 chr11 31294294 31294393 -117489079 - L2 LINE L2 -23 3290 3193 261 337 31 10 chr11 31294406 31294504 -117488968 - MIR SINE MIR -79 129 30 391 323 74 45 chr11 31294751 31295020 -117488452 + L2 LINE L2 3037 3313 0 1802 281 50 18 chr11 31295951 31296674 -117486798 + MER20B DNA MER1_type 1 746 -37 282 330 28 37 chr11 31297502 31297611 -117485861 + L2 LINE L2 3204 3311 -2 939 283 100 57 chr11 31298424 31298964 -117484508 - MLT1K LTR MaLR -10 578 16 343 286 94 83 chr11 31298993 31299343 -117484129 + L1ME3 LINE L1 5585 5938 -183 248 315 40 47 chr11 31299959 31300108 -117483364 - MIR SINE MIR -6 256 109 243 0 0 0 chr11 31300659 31300686 -117482786 + (CA)n Simple_repeat Simple_repeat 2 28 0 3236 144 13 42 chr11 31300697 31300812 -117482660 + MER1A DNA MER1_type 1 118 -2582 2056 160 0 3 chr11 31300812 31301125 -117482347 - AluSx SINE Alu 0 312 1 3236 144 13 42 chr11 31301125 31301552 -117481920 + MER1A DNA MER1_type 118 527 0 2141 98 11 0 chr11 31302350 31302665 -117480807 + AluSc SINE Alu 1 318 0 227 188 0 29 chr11 31303573 31303642 -117479830 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 234 0 0 0 chr11 31304316 31304342 -117479130 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 1336 211 55 43 chr11 31305063 31305511 -117477961 - MLT1C LTR MaLR -30 465 5 464 239 142 0 chr11 31305844 31305957 -117477515 + L2 LINE L2 3139 3267 -5 363 78 0 0 chr11 31306336 31306387 -117477085 + (TG)n Simple_repeat Simple_repeat 1 51 0 233 224 106 128 chr11 31307383 31307493 -117475979 + MIR SINE MIR 84 190 -72 2058 116 25 0 chr11 31307493 31307770 -117475702 + AluSg SINE Alu 3 286 -24 233 224 106 128 chr11 31307770 31307838 -117475634 + MIR SINE MIR 190 258 -4 273 160 0 0 chr11 31308011 31308061 -117475411 + L1ME3 LINE L1 6105 6154 -8 577 257 81 9 chr11 31308469 31308663 -117474809 - MIR SINE MIR 0 262 65 1099 139 49 67 chr11 31308667 31308890 -117474582 + AluJb SINE Alu 94 312 0 406 235 0 5 chr11 31308906 31308992 -117474480 - MIR SINE MIR -122 86 3 3458 105 15 18 chr11 31309047 31309663 -117473809 + MER4B LTR ERV1 1 779 0 183 42 0 0 chr11 31309909 31309933 -117473539 + (TG)n Simple_repeat Simple_repeat 2 25 0 278 208 117 13 chr11 31310042 31310119 -117473353 + L2 LINE L2 1879 1963 -1351 181 314 129 0 chr11 31310247 31310317 -117473155 + L2 LINE L2 3143 3221 -51 1964 135 130 18 chr11 31310362 31310746 -117472726 - MSTA LTR MaLR -1 427 1 3303 138 14 12 chr11 31310750 31311315 -117472157 - MSTA-int LTR MaLR -11 1569 1004 863 165 131 55 chr11 31311319 31311382 -117472090 - MSTA LTR MaLR -173 255 198 2281 100 0 0 chr11 31311382 31311673 -117471799 - AluSc SINE Alu -18 291 1 863 165 131 55 chr11 31311673 31311846 -117471626 - MSTA LTR MaLR -230 198 1 289 193 178 13 chr11 31311846 31311952 -117471520 + MIR SINE MIR 47 144 -64 1893 217 46 65 chr11 31312165 31312626 -117470846 + MLT1F LTR MaLR 10 461 -81 2438 55 10 3 chr11 31312626 31312919 -117470553 - AluY SINE Alu -16 295 1 1893 217 46 65 chr11 31312919 31313000 -117470472 + MLT1F LTR MaLR 461 542 0 258 367 0 0 chr11 31314192 31314282 -117469190 - MIR SINE MIR -108 154 65 206 374 17 0 chr11 31314523 31314638 -117468834 - MIR SINE MIR -12 250 134 * 1426 237 82 31 chr11 31314593 31315108 -117468364 + L2 LINE L2 1544 2084 -1230 370 228 118 6 chr11 31315114 31315269 -117468203 + L1M4 LINE L1 4311 4482 -1664 519 273 137 0 chr11 31315287 31315470 -117468002 + L2 LINE L2 2067 2274 -1040 1132 150 16 0 chr11 31315473 31315660 -117467812 + MSTB LTR MaLR 237 426 0 931 290 112 28 chr11 31315660 31316164 -117467308 + L2 LINE L2 2513 3077 -195 1749 271 71 19 chr11 31316164 31316728 -117466744 + MLT1E LTR MaLR 1 593 0 931 290 112 28 chr11 31316728 31316939 -117466533 + L2 LINE L2 3077 3269 -3 900 183 186 8 chr11 31317006 31317258 -117466214 - MER5C DNA MER1_type -17 307 11 535 244 6 62 chr11 31317432 31317608 -117465864 + LTR16A1 LTR ERVL 266 431 -26 1598 184 32 26 chr11 31317995 31318337 -117465135 - MER2 DNA MER2_type 0 344 1 2862 218 93 29 chr11 31318550 31319381 -117464091 - MLT1D-int LTR MaLR -487 884 1 1388 244 68 43 chr11 31319381 31319869 -117463603 - MLT1D LTR MaLR 0 505 6 619 224 29 63 chr11 31319889 31320063 -117463409 + L2 LINE L2 2629 2796 -518 307 271 78 8 chr11 31320303 31320432 -117463040 + L1ME4a LINE L1 5984 6121 0 193 216 59 39 chr11 31320616 31320667 -117462805 + L2 LINE L2 3262 3313 0 311 264 144 8 chr11 31321529 31321654 -117461818 - MIR SINE MIR -12 250 109 1493 287 30 13 chr11 31321662 31322129 -117461343 + MLT1J LTR MaLR 1 475 -36 189 306 42 0 chr11 31322130 31322202 -117461270 - MIR SINE MIR -156 106 32 211 373 0 15 chr11 31322455 31322522 -117460950 - MIR SINE MIR -126 82 17 749 250 36 16 chr11 31323157 31323349 -117460123 + MIR SINE MIR 59 254 -8 410 94 16 0 chr11 31323350 31323414 -117460058 + (CAT)n Simple_repeat Simple_repeat 1 65 0 240 293 0 94 chr11 31323804 31323910 -117459562 + L2 LINE L2 2979 3074 -198 400 275 63 53 chr11 31324070 31324418 -117459054 + MLT1L LTR MaLR 238 612 -3 257 321 144 5 chr11 31324630 31324845 -117458627 + L2 LINE L2 3069 3313 0 193 235 78 0 chr11 31325078 31325129 -117458343 - L2 LINE L2 -1 3312 3258 564 291 125 35 chr11 31325306 31325619 -117457853 - MER102b DNA MER1_type 0 341 1 298 268 0 0 chr11 31325896 31325952 -117457520 - MIR SINE MIR -133 75 20 192 121 30 0 chr11 31326115 31326148 -117457324 + L2 LINE L2 3264 3297 -16 720 141 0 0 chr11 31326331 31326452 -117457020 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 189 336 119 15 chr11 31326769 31326903 -117456569 - MIR3 SINE MIR -6 202 55 895 326 128 23 chr11 31327532 31328331 -117455141 + L2 LINE L2 2375 3255 -58 197 256 0 0 chr11 31328724 31328767 -117454705 + L2 LINE L2 3226 3268 -4 961 126 0 0 chr11 31328878 31329005 -117454467 + FLAM_C SINE Alu 2 128 -5 511 307 14 14 chr11 31330240 31330380 -117453092 + MIR3 SINE MIR 37 176 -32 284 188 254 65 chr11 31330969 31331107 -117452365 - L1ME4a LINE L1 -3 6118 5955 356 165 132 11 chr11 31331177 31331268 -117452204 - MLT1K LTR MaLR 0 588 487 432 314 6 6 chr11 31331271 31331443 -117452029 + L1ME3A LINE L1 5735 5906 -264 7429 41 3 6 chr11 31331707 31331825 -117451647 - L1PA6 LINE L1 -6 6148 6031 2602 49 0 0 chr11 31331825 31332132 -117451340 - AluY SINE Alu -4 307 1 7429 41 3 6 chr11 31332132 31332910 -117450562 - L1PA6 LINE L1 -123 6031 5254 795 279 37 113 chr11 31333027 31333489 -117449983 - MLT1K LTR MaLR -159 429 3 669 277 62 19 chr11 31334043 31334364 -117449108 - L1ME4a LINE L1 -267 5854 5520 550 339 14 9 chr11 31334574 31334792 -117448680 + L2 LINE L2 2421 2639 -675 820 293 125 36 chr11 31334865 31335312 -117448160 + L2 LINE L2 2813 3299 -14 300 158 0 0 chr11 31335313 31335370 -117448102 + CT-rich Low_complexity Low_complexity 1 57 0 325 317 83 0 chr11 31335896 31336041 -117447431 + MER117 DNA MER1_type 41 197 0 623 329 32 5 chr11 31336410 31336629 -117446843 + MIR SINE MIR 30 254 -8 258 281 150 15 chr11 31337391 31337521 -117445951 - MIR3 SINE MIR -12 196 48 570 304 93 5 chr11 31337628 31337832 -117445640 - MIR SINE MIR -3 259 38 457 85 0 0 chr11 31338532 31338591 -117444881 + HERVL-A2 LTR ERVL 4548 4606 -1048 5805 73 3 1 chr11 31338599 31339329 -117444143 + HERVL-A2 LTR ERVL 4924 5654 0 3514 45 24 56 chr11 31339333 31339517 -117443955 + MLT2A2 LTR ERVL 5 193 -260 2327 37 4 0 chr11 31339517 31339787 -117443685 + AluY SINE Alu 32 302 -9 3514 45 24 56 chr11 31339787 31340066 -117443406 + MLT2A2 LTR ERVL 193 453 0 293 271 82 16 chr11 31340690 31340812 -117442660 + L3 LINE CR1 739 868 -709 213 262 193 35 chr11 31341035 31341180 -117442292 + MIR SINE MIR 35 202 -60 799 259 87 51 chr11 31341592 31341947 -117441525 + L3 LINE CR1 1021 1388 -189 872 276 49 0 chr11 31341975 31342200 -117441272 + MIR SINE MIR 11 246 -16 237 226 0 0 chr11 31342220 31342273 -117441199 - L2 LINE L2 -1061 2253 2201 894 304 26 26 chr11 31342278 31342591 -117440881 - MLT1L LTR MaLR -7 608 296 255 270 24 63 chr11 31342624 31342750 -117440722 - MLT1L LTR MaLR -427 188 68 230 344 95 36 chr11 31342783 31343339 -117440133 - L2 LINE L2 -1198 2116 1528 352 329 47 13 chr11 31344281 31344430 -117439042 - MIR SINE MIR -72 190 37 333 328 0 8 chr11 31344640 31344762 -117438710 - LTR67 LTR ERVL -7 550 430 232 357 18 36 chr11 31345504 31345672 -117437800 + MER5B DNA MER1_type 7 171 -7 424 313 97 15 chr11 31345738 31345933 -117437539 + MIR SINE MIR 17 227 -35 680 324 21 8 chr11 31347110 31347348 -117436124 - MIR SINE MIR -12 250 10 1335 68 0 28 chr11 31348696 31348873 -117434599 + AluY SINE Alu 127 298 -13 23 0 0 0 chr11 31348917 31348940 -117434532 + AT_rich Low_complexity Low_complexity 1 23 0 442 261 93 68 chr11 31348964 31349317 -117434155 + L1ME4a LINE L1 5759 6120 -1 287 250 14 0 chr11 31350452 31350524 -117432948 + MLT1K LTR MaLR 512 584 -4 239 336 90 8 chr11 31350536 31350658 -117432814 - MARNA DNA Mariner -59 527 396 748 261 66 17 chr11 31350703 31350944 -117432528 - MIR SINE MIR -2 260 8 2070 65 8 15 chr11 31351063 31351326 -117432146 + L1PA8 LINE L1 5912 6172 0 3675 175 18 2 chr11 31351378 31352007 -117431465 + L1MB3 LINE L1 5545 6183 0 212 267 60 93 chr11 31352064 31352214 -117431258 - L2 LINE L2 0 3313 3169 268 320 97 0 chr11 31352438 31352541 -117430931 - MIR SINE MIR -1 261 149 986 278 83 62 chr11 31352544 31353124 -117430348 + MLT1L LTR MaLR 7 598 -17 372 304 10 10 chr11 31353790 31353892 -117429580 + MIR SINE MIR 35 136 -72 189 195 0 0 chr11 31353997 31354038 -117429434 + T-rich Low_complexity Low_complexity 1 41 0 489 213 49 8 chr11 31355232 31355354 -117428118 - MIR SINE MIR -46 216 90 272 271 73 21 chr11 31356242 31356338 -117427134 - L2 LINE L2 -4 3309 3209 234 353 69 0 chr11 31357238 31357354 -117426118 + MIR SINE MIR 66 189 -73 924 228 5 31 chr11 31357543 31357736 -117425736 - MER5A DNA MER1_type 0 189 2 1166 289 60 24 chr11 31357763 31358410 -117425062 - L2 LINE L2 -8 3305 2438 295 253 67 0 chr11 31358516 31358591 -117424881 + MER91C DNA MER1_type 7 86 -54 773 271 44 4 chr11 31359452 31359677 -117423795 - MIR SINE MIR -1 261 28 2109 112 0 7 chr11 31359702 31360017 -117423455 - AluSg SINE Alu 0 313 1 429 296 114 36 chr11 31360065 31360285 -117423187 - MIR SINE MIR -6 256 20 2031 148 0 0 chr11 31360418 31360723 -117422749 + AluSx SINE Alu 1 305 -7 397 295 120 47 chr11 31360879 31361130 -117422342 + L2 LINE L2 2779 3057 -256 2218 217 16 16 chr11 31361912 31362424 -117421048 - Charlie1b DNA MER1_type 0 523 12 1157 321 50 23 chr11 31362448 31362890 -117420582 - MLT1K LTR MaLR -97 491 38 1344 165 30 76 chr11 31362892 31363195 -117420277 + AluJo SINE Alu 1 289 -23 245 310 100 0 chr11 31363305 31363405 -117420067 - L2 LINE L2 -2 3270 3161 * 533 233 17 0 chr11 31363385 31363501 -117419971 - MIR SINE MIR -4 258 141 221 299 70 90 chr11 31363481 31363682 -117419790 - L2 LINE L2 -44 3228 3032 * 234 0 0 0 chr11 31363772 31363798 -117419674 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1742 176 0 0 chr11 31363798 31364077 -117419395 - AluJb SINE Alu -32 280 2 311 286 181 18 chr11 31365163 31365390 -117418082 - L2 LINE L2 -201 3071 2808 198 0 0 0 chr11 31365832 31365854 -117417618 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr11 31366872 31366894 -117416578 + AT_rich Low_complexity Low_complexity 1 22 0 542 333 23 6 chr11 31367657 31367834 -117415638 + MIR SINE MIR 13 192 -70 222 37 0 0 chr11 31368820 31368847 -117414625 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2226 123 0 0 chr11 31369072 31369373 -117414099 + AluSx SINE Alu 1 301 -11 2121 130 7 0 chr11 31369410 31369709 -117413763 + AluSx SINE Alu 1 301 -11 247 291 114 0 chr11 31370307 31370386 -117413086 + L2 LINE L2 3192 3279 -34 225 94 0 0 chr11 31370396 31370428 -117413044 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1064 276 43 88 chr11 31370428 31371190 -117412282 - L2 LINE L2 -3 3310 2597 1826 165 13 0 chr11 31371190 31371493 -117411979 + AluSx SINE Alu 6 312 0 1064 276 43 88 chr11 31371493 31371653 -117411819 - L2 LINE L2 -716 2597 2431 21 0 0 0 chr11 31371653 31371674 -117411798 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 31372593 31372613 -117410859 + (TTTCC)n Simple_repeat Simple_repeat 5 24 0 213 304 36 0 chr11 31374026 31374082 -117409390 - MIR3 SINE MIR -40 168 111 194 290 80 30 chr11 31374160 31374260 -117409212 - L2 LINE L2 0 3272 3168 689 128 6 83 chr11 31374583 31374722 -117408750 - MER69 DNA AcHobo -1 2525 2398 1827 148 3 46 chr11 31374722 31375046 -117408426 + AluJb SINE Alu 1 310 -2 689 128 6 83 chr11 31375046 31375062 -117408410 - MER69 DNA AcHobo -128 2398 2382 279 132 264 0 chr11 31375216 31375269 -117408203 - MER69 DNA AcHobo -2459 67 1 206 293 67 13 chr11 31375272 31375347 -117408125 - MIR SINE MIR -153 109 31 370 270 59 53 chr11 31375351 31375487 -117407985 + MIR SINE MIR 22 156 -106 2138 114 0 0 chr11 31375487 31375768 -117407704 + AluSq SINE Alu 1 281 -32 647 0 26 0 chr11 31375768 31375846 -117407626 + (TAAAA)n Simple_repeat Simple_repeat 1 80 0 370 270 59 53 chr11 31375846 31375860 -117407612 + MIR SINE MIR 155 174 -88 974 282 131 31 chr11 31375922 31376379 -117407093 + MLT1J LTR MaLR 1 503 -8 490 264 43 45 chr11 31376720 31376889 -117406583 - MIR SINE MIR -62 146 30 1575 282 44 31 chr11 31377022 31377540 -117405932 - MLT1H1 LTR MaLR -23 532 8 2179 157 12 56 chr11 31377612 31377842 -117405630 - MLT1B LTR MaLR 0 390 184 2277 68 54 0 chr11 31377842 31378122 -117405350 - AluSp SINE Alu -18 295 1 2179 157 12 56 chr11 31378122 31378299 -117405173 - MLT1B LTR MaLR -206 184 1 252 343 65 9 chr11 31378316 31378424 -117405048 - MIR SINE MIR -65 143 30 404 318 0 0 chr11 31379300 31379407 -117404065 + MIR SINE MIR 3 109 -153 245 294 24 0 chr11 31379666 31379751 -117403721 + MIR3 SINE MIR 106 192 -16 1788 190 0 0 chr11 31379830 31380140 -117403332 + AluJb SINE Alu 3 312 0 276 362 17 23 chr11 31380655 31380832 -117402640 - L3 LINE CR1 -351 1226 1051 237 253 165 0 chr11 31381201 31381280 -117402192 + MER5A DNA MER1_type 11 102 -87 244 286 0 12 chr11 31386799 31386883 -117396589 + G-rich Low_complexity Low_complexity 2 84 0 311 202 11 0 chr11 31388022 31388111 -117395361 + CT-rich Low_complexity Low_complexity 3 92 0 210 91 0 0 chr11 31389226 31389259 -117394213 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 288 0 0 0 chr11 31389926 31389958 -117393514 + (CA)n Simple_repeat Simple_repeat 2 33 0 465 84 0 0 chr11 31391333 31391404 -117392068 + (TG)n Simple_repeat Simple_repeat 2 72 0 301 311 192 0 chr11 31391951 31392102 -117391370 - MIR SINE MIR -51 211 32 24 32 0 0 chr11 31392200 31392231 -117391241 + AT_rich Low_complexity Low_complexity 1 31 0 285 301 14 0 chr11 31392439 31392512 -117390960 - L3 LINE CR1 -4 1573 1500 277 385 10 0 chr11 31392723 31392819 -117390653 - L2 LINE L2 -36 3236 3140 209 327 64 45 chr11 31392887 31393043 -117390429 + MIR3 SINE MIR 21 179 -29 22 0 0 0 chr11 31393859 31393881 -117389591 + AT_rich Low_complexity Low_complexity 1 22 0 1696 159 76 0 chr11 31394621 31394910 -117388562 + AluSx SINE Alu 2 312 0 1258 177 70 49 chr11 31394927 31395004 -117388468 - Charlie4a DNA MER1_type -1470 491 417 2160 122 7 0 chr11 31395004 31395299 -117388173 + AluSx SINE Alu 1 297 -15 1258 177 70 49 chr11 31395299 31395565 -117387907 - Charlie4a DNA MER1_type -1544 417 141 396 267 0 43 chr11 31396109 31396225 -117387247 - MIR SINE MIR -126 136 26 652 215 107 30 chr11 31396516 31396749 -117386723 - MIR SINE MIR 0 262 12 224 305 37 12 chr11 31398134 31398216 -117385256 - MIR SINE MIR -99 109 26 2436 89 0 0 chr11 31398691 31398994 -117384478 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr11 31399061 31399084 -117384388 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr11 31399307 31399338 -117384134 + AT_rich Low_complexity Low_complexity 1 31 0 636 330 122 6 chr11 31401155 31401467 -117382005 + L3b LINE CR1 1102 1449 -134 243 259 95 52 chr11 31401894 31402010 -117381462 + L2 LINE L2 3191 3311 -2 243 278 52 35 chr11 31404946 31405061 -117378411 + MIR SINE MIR 37 153 -109 280 246 77 113 chr11 31405419 31405614 -117377858 - MER5A DNA MER1_type -1 188 1 261 0 0 0 chr11 31407342 31407371 -117376101 + (T)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr11 31408272 31408301 -117375171 + (T)n Simple_repeat Simple_repeat 1 29 0 288 0 0 0 chr11 31409331 31409363 -117374109 + (TC)n Simple_repeat Simple_repeat 2 33 0 252 143 0 0 chr11 31409363 31409405 -117374067 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 80 0 0 chr11 31409405 31409430 -117374042 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 92 0 0 chr11 31410654 31410719 -117372753 + AT_rich Low_complexity Low_complexity 1 65 0 722 37 0 0 chr11 31410897 31410978 -117372494 - AluY SINE Alu -20 291 211 820 233 21 10 chr11 31410978 31411265 -117372207 - L1MC4a LINE L1 -1867 5941 5486 458 230 48 16 chr11 31413366 31413492 -117369980 + MIR SINE MIR 37 166 -96 200 275 50 38 chr11 31416650 31416730 -117366742 - MER5A DNA MER1_type -102 87 7 2488 52 0 0 chr11 31417130 31417419 -117366053 - L1PA5 LINE L1 -1 6804 6516 30010 55 6 1 chr11 31417426 31421565 -117361907 - L1PA5 LINE L1 -396 6409 2241 23 0 0 0 chr11 31423371 31423394 -117360078 + AT_rich Low_complexity Low_complexity 1 23 0 798 318 40 61 chr11 31425114 31425707 -117357765 + L3 LINE CR1 641 1270 -307 224 244 192 0 chr11 31425833 31425911 -117357561 + L3 LINE CR1 1250 1342 -235 1748 168 0 4 chr11 31426024 31426304 -117357168 + AluJb SINE Alu 1 279 -33 227 77 0 26 chr11 31426305 31426344 -117357128 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 212 298 0 0 chr11 31427072 31427129 -117356343 - L2 LINE L2 0 3272 3216 180 0 0 0 chr11 31428037 31428057 -117355415 + (TG)n Simple_repeat Simple_repeat 1 20 0 1948 91 14 35 chr11 31428503 31428789 -117354683 + L1PA10 LINE L1 5887 6166 -2 371 306 45 30 chr11 31429058 31429260 -117354212 - MIR SINE MIR -32 230 30 26 0 0 0 chr11 31429480 31429506 -117353966 + AT_rich Low_complexity Low_complexity 1 26 0 33490 102 9 55 chr11 31429632 31436076 -117347396 + L1PA7 LINE L1 10 6144 -10 27 49 0 0 chr11 31436076 31436117 -117347355 + AT_rich Low_complexity Low_complexity 1 41 0 274 309 69 51 chr11 31436132 31436307 -117347165 - MER5B DNA MER1_type 0 178 1 547 259 198 15 chr11 31436531 31436728 -117346744 + MIR SINE MIR 30 262 0 338 256 37 0 chr11 31437243 31437325 -117346147 + MIR SINE MIR 33 117 -145 271 285 54 46 chr11 31437777 31437907 -117345565 + L2 LINE L2 3177 3307 -6 11326 114 14 7 chr11 31439263 31440898 -117342574 - L1P LINE L1 -4497 1649 3 1673 165 4 22 chr11 31441424 31441697 -117341775 - AluJo SINE Alu -44 268 1 22 0 0 0 chr11 31441931 31441953 -117341519 + AT_rich Low_complexity Low_complexity 1 22 0 430 264 54 8 chr11 31442521 31442650 -117340822 + MIR SINE MIR 72 206 -56 22 35 0 0 chr11 31442918 31442947 -117340525 + AT_rich Low_complexity Low_complexity 1 29 0 2237 143 3 56 chr11 31443332 31443688 -117339784 + MER1B DNA MER1_type 1 337 0 1562 107 14 5 chr11 31443976 31444192 -117339280 + AluSg/x SINE Alu 83 300 -10 367 254 71 47 chr11 31444671 31444840 -117338632 - L2 LINE L2 -712 2602 2430 322 118 0 0 chr11 31445401 31445452 -117338020 - AluSp/q SINE Alu -1 302 252 * 388 165 51 0 chr11 31445447 31445526 -117337946 + HsTC2 DNA Tc2 1816 1898 0 180 0 0 0 chr11 31446537 31446557 -117336915 + (CA)n Simple_repeat Simple_repeat 1 20 0 287 327 168 0 chr11 31446879 31446992 -117336480 + MIR3 SINE MIR 36 167 -41 211 102 41 20 chr11 31448914 31448963 -117334509 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 204 237 0 17 chr11 31450892 31450951 -117332521 + T-rich Low_complexity Low_complexity 2 59 0 24 77 0 0 chr11 31451109 31451161 -117332311 + AT_rich Low_complexity Low_complexity 1 52 0 31 68 0 0 chr11 31451221 31451280 -117332192 + AT_rich Low_complexity Low_complexity 1 59 0 939 193 34 0 chr11 31454391 31454567 -117328905 + MER5A DNA MER1_type 8 189 0 895 194 42 15 chr11 31456532 31456745 -117326727 + MIR SINE MIR 38 252 -10 547 276 42 36 chr11 31457240 31457432 -117326040 - MIR SINE MIR -21 241 49 460 302 148 10 chr11 31458417 31458619 -117324853 - MIR SINE MIR -25 237 8 627 185 81 64 chr11 31458620 31458732 -117324740 + MER5B DNA MER1_type 3 121 -57 2891 13 0 0 chr11 31458732 31459045 -117324427 - AluYb8 SINE Alu -4 314 2 627 185 81 64 chr11 31459045 31459105 -117324367 + MER5B DNA MER1_type 121 178 0 257 314 51 64 chr11 31460261 31460417 -117323055 + L2 LINE L2 2551 2704 -610 341 270 90 0 chr11 31460731 31460842 -117322630 - MIR SINE MIR -94 168 48 312 91 0 0 chr11 31460890 31460934 -117322538 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 180 335 80 35 chr11 31460967 31461167 -117322305 + L2 LINE L2 2749 2957 -357 542 187 22 14 chr11 31461225 31461364 -117322108 - MER53 DNA DNA -49 140 1 1723 172 0 30 chr11 31461582 31461878 -117321594 + AluJo SINE Alu 1 287 -25 182 218 136 73 chr11 31462172 31462282 -117321190 + L2 LINE L2 3156 3272 0 666 224 17 62 chr11 31462395 31462574 -117320898 + MER5B DNA MER1_type 2 172 -6 368 312 15 79 chr11 31463193 31463330 -117320142 + MIR3 SINE MIR 14 135 -73 1175 189 80 117 chr11 31463330 31463706 -117319766 - MLT1A1 LTR MaLR -2 363 2 368 312 15 79 chr11 31463706 31463770 -117319702 + MIR3 SINE MIR 135 202 -6 569 317 24 0 chr11 31463878 31464045 -117319427 + MIR3 SINE MIR 24 194 -14 207 161 0 0 chr11 31464207 31464238 -117319234 + polypurine Low_complexity Low_complexity 1 31 0 511 272 63 11 chr11 31465000 31465191 -117318281 + MIR SINE MIR 6 206 -56 395 238 154 42 chr11 31465595 31465738 -117317734 - MIR SINE MIR -102 160 2 1959 153 0 0 chr11 31465771 31466059 -117317413 - AluSx SINE Alu -24 288 1 382 277 92 0 chr11 31466451 31466570 -117316902 + MIR3 SINE MIR 73 202 -6 2931 178 73 68 chr11 31467086 31467773 -117315699 + LTR8 LTR ERV1 2 691 0 3333 98 162 0 chr11 31467773 31468286 -117315186 + HUERS-P1 LTR ERV1 1 596 -5667 24 0 0 0 chr11 31519357 31519381 -117264091 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 31519403 31519431 -117264041 + GC_rich Low_complexity Low_complexity 1 28 0 384 59 0 0 chr11 31520214 31520265 -117263207 + (TGG)n Simple_repeat Simple_repeat 2 52 0 2443 61 3 3 chr11 31521057 31521368 -117262104 + AluSp SINE Alu 1 311 -2 327 241 219 22 chr11 31521632 31521769 -117261703 - MIR3 SINE MIR -22 186 23 1616 119 45 68 chr11 31521891 31522202 -117261270 - AluSq SINE Alu -9 304 1 303 274 53 21 chr11 31522232 31522327 -117261145 - MER5A DNA MER1_type -86 103 6 701 128 8 45 chr11 31522602 31522735 -117260737 - L1MB3 LINE L1 -298 5885 5758 390 239 31 101 chr11 31523697 31523856 -117259616 - L3 LINE CR1 -89 1488 1341 1648 134 0 33 chr11 31523898 31524173 -117259299 - AluJo SINE Alu -7 305 40 504 229 61 78 chr11 31524465 31524696 -117258776 + MIR SINE MIR 1 227 -35 2082 200 41 52 chr11 31525814 31526049 -117257423 + L1ME1 LINE L1 5581 5817 -349 1710 178 3 10 chr11 31526049 31526353 -117257119 + AluJo SINE Alu 1 302 -10 2082 200 41 52 chr11 31526353 31526678 -117256794 + L1ME1 LINE L1 5817 6135 -31 2188 102 0 31 chr11 31526719 31527042 -117256430 - AluSq SINE Alu 0 313 1 1923 108 0 0 chr11 31527681 31527932 -117255540 - AluSg SINE Alu -13 297 47 470 88 15 0 chr11 31528302 31528370 -117255102 - Alu SINE Alu -9 303 235 2193 116 3 7 chr11 31528304 31528606 -117254866 - AluSx SINE Alu -11 301 1 2215 98 0 7 chr11 31528806 31529103 -117254369 + AluSg1 SINE Alu 1 295 -14 359 216 62 52 chr11 31529172 31529269 -117254203 - MIR SINE MIR -68 140 43 420 246 6 123 chr11 31530127 31530306 -117253166 - MIR3 SINE MIR -5 203 46 202 250 238 0 chr11 31530964 31531048 -117252424 - L2 LINE L2 0 3313 3210 561 263 8 0 chr11 31533692 31533825 -117249647 - MER94 DNA DNA 0 134 1 2112 109 3 0 chr11 31533918 31534201 -117249271 + AluSx SINE Alu 1 284 -28 236 30 30 0 chr11 31534214 31534247 -117249225 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 223 286 0 0 chr11 31535072 31535128 -117248344 - L2 LINE L2 0 3272 3217 284 274 0 0 chr11 31535538 31535611 -117247861 - MER94 DNA DNA -61 73 1 544 314 21 53 chr11 31535939 31536000 -117247472 + Tigger8 DNA MER2_type 56 117 -549 812 107 0 16 chr11 31536000 31536121 -117247351 - L1PA10 LINE L1 -3 6165 6047 544 314 21 53 chr11 31536121 31536396 -117247076 + Tigger8 DNA MER2_type 117 381 -285 1339 164 5 0 chr11 31536401 31536608 -117246864 + AluJo SINE Alu 85 292 -20 1551 184 35 4 chr11 31536743 31537004 -117246468 - AluJb SINE Alu -39 273 5 712 245 37 6 chr11 31537907 31538070 -117245402 - MER5B DNA MER1_type -2 176 9 209 288 106 0 chr11 31538058 31538124 -117245348 - MIR3 SINE MIR -20 188 116 * 950 218 63 0 chr11 31538538 31538744 -117244728 + MER58A DNA MER1_type 1 219 -5 348 271 34 77 chr11 31538774 31538981 -117244491 - HAL1b LINE L1 -872 476 279 812 272 78 82 chr11 31539502 31539926 -117243546 + MLT1J LTR MaLR 1 424 -87 776 83 25 8 chr11 31539926 31540047 -117243425 - L1MB8 LINE L1 -6 6172 6050 812 272 78 82 chr11 31540047 31540133 -117243339 + MLT1J LTR MaLR 424 509 -2 257 88 0 0 chr11 31540830 31540864 -117242608 + Alu SINE Alu 255 288 -14 1784 128 8 101 chr11 31541148 31541514 -117241958 + MER1B DNA MER1_type 3 334 -3 21 0 0 0 chr11 31542238 31542259 -117241213 + AT_rich Low_complexity Low_complexity 1 21 0 736 150 33 0 chr11 31542259 31542379 -117241093 + FLAM_C SINE Alu 1 124 -19 483 275 123 0 chr11 31542569 31542740 -117240732 - L2 LINE L2 0 3313 3122 2092 102 13 58 chr11 31542979 31543292 -117240180 - AluSx SINE Alu -13 299 1 234 296 219 20 chr11 31543360 31543556 -117239916 + L2 LINE L2 2743 2977 -337 341 296 106 15 chr11 31543565 31543697 -117239775 + L2 LINE L2 3158 3301 -12 284 237 104 52 chr11 31543718 31543853 -117239619 - L2 LINE L2 -229 3084 2943 21 0 0 0 chr11 31543931 31543952 -117239520 + AT_rich Low_complexity Low_complexity 1 21 0 413 273 55 0 chr11 31543958 31544068 -117239404 - L2 LINE L2 -13 3300 3185 240 86 0 0 chr11 31544542 31544577 -117238895 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 71 0 0 chr11 31544775 31544817 -117238655 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 31545181 31545203 -117238269 + AT_rich Low_complexity Low_complexity 1 22 0 434 293 37 37 chr11 31545205 31545369 -117238103 + MIR3 SINE MIR 24 187 -21 1070 162 6 0 chr11 31545372 31545539 -117237933 - AluJb SINE Alu -13 299 132 204 125 0 0 chr11 31545546 31545578 -117237894 + (TA)n Simple_repeat Simple_repeat 1 32 0 889 140 28 14 chr11 31545721 31545864 -117237608 - AluSg/x SINE Alu -23 289 145 272 305 158 0 chr11 31546115 31546197 -117237275 - L2 LINE L2 -39 3274 3180 2112 113 16 13 chr11 31546224 31546533 -117236939 + AluSq SINE Alu 1 310 -3 339 296 114 28 chr11 31546662 31546838 -117236634 - L2 LINE L2 -416 2898 2708 2497 153 42 24 chr11 31547337 31547794 -117235678 - MLT1C LTR MaLR -2 465 1 1559 127 3 124 chr11 31548091 31548295 -117235177 - AluSp SINE Alu -10 303 151 1974 136 0 7 chr11 31548295 31548581 -117234891 - AluSx SINE Alu -28 284 1 1559 127 3 124 chr11 31548581 31548698 -117234774 - AluSp SINE Alu -162 151 21 313 111 0 0 chr11 31548698 31548743 -117234729 - AluSp SINE Alu -256 45 1 23 33 0 0 chr11 31548958 31548988 -117234484 + AT_rich Low_complexity Low_complexity 1 30 0 649 258 148 0 chr11 31549639 31549848 -117233624 - MIR SINE MIR -21 241 2 2173 98 0 19 chr11 31550641 31550958 -117232514 + AluY SINE Alu 1 311 0 183 80 0 0 chr11 31551194 31551219 -117232253 + (A)n Simple_repeat Simple_repeat 1 25 0 767 165 82 38 chr11 31551287 31551445 -117232027 + FRAM SINE Alu 1 165 -1 1281 160 5 0 chr11 31551590 31551784 -117231688 + AluSg/x SINE Alu 99 293 -19 823 128 0 30 chr11 31552908 31553041 -117230431 + FLAM_C SINE Alu 5 133 0 1612 102 18 0 chr11 31553204 31553430 -117230042 - MER30 DNA MER1_type 0 230 1 1993 104 54 17 chr11 31553521 31553819 -117229653 - AluSx SINE Alu -3 309 1 229 259 74 25 chr11 31554425 31554506 -117228966 - MIR3 SINE MIR -36 172 88 1902 138 0 58 chr11 31554637 31554948 -117228524 + AluJb SINE Alu 1 293 -19 2498 78 0 0 chr11 31555189 31555498 -117227974 + AluSq SINE Alu 1 309 -4 196 286 12 36 chr11 31558022 31558106 -117225366 - MIR3 SINE MIR -7 201 120 222 219 0 53 chr11 31558348 31558462 -117225010 + GA-rich Low_complexity Low_complexity 3 110 0 290 357 27 18 chr11 31558672 31558784 -117224688 - MER91A DNA MER1_type -82 114 2 2312 146 93 37 chr11 31559266 31559573 -117223899 - MLT2B1 LTR ERVL -7 513 168 2182 119 0 22 chr11 31559573 31559905 -117223567 - AluSx SINE Alu 0 312 1 2312 146 93 37 chr11 31559905 31560083 -117223389 - MLT2B1 LTR ERVL -352 168 1 1728 151 6 63 chr11 31560271 31560589 -117222883 + AluJo SINE Alu 2 301 -11 462 311 52 29 chr11 31560592 31560936 -117222536 - L1ME LINE L1 -532 5632 5281 1050 211 48 0 chr11 31560938 31561147 -117222325 - MER58A DNA MER1_type -2 222 4 1420 187 30 16 chr11 31561195 31561500 -117221972 - AluJo SINE Alu -3 309 1 2485 59 7 0 chr11 31561598 31561901 -117221571 - AluSp SINE Alu -8 305 1 216 97 0 0 chr11 31562189 31562202 -117221270 + (TG)n Simple_repeat Simple_repeat 1 13 -351 2043 111 7 20 chr11 31562202 31562508 -117220964 + AluSg SINE Alu 1 302 -8 216 97 0 0 chr11 31562508 31562522 -117220950 + (TG)n Simple_repeat Simple_repeat 12 364 0 216 97 0 0 chr11 31562522 31562553 -117220919 + (TG)n Simple_repeat Simple_repeat 2 32 0 309 109 0 0 chr11 31562553 31562599 -117220873 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1910 125 57 0 chr11 31562607 31562888 -117220584 + AluSx SINE Alu 2 298 -14 2165 105 16 0 chr11 31563709 31564013 -117219459 - AluSp SINE Alu -3 310 2 198 0 0 0 chr11 31564685 31564707 -117218765 + (A)n Simple_repeat Simple_repeat 1 22 0 267 79 0 0 chr11 31565054 31565092 -117218380 + (TC)n Simple_repeat Simple_repeat 2 39 0 2401 87 3 13 chr11 31565272 31565582 -117217890 - AluSx SINE Alu -5 307 1 273 297 55 23 chr11 31565675 31565803 -117217669 - MER5A DNA MER1_type -22 167 36 1041 262 104 13 chr11 31565852 31566255 -117217217 - LTR16B LTR ERVL -4 452 15 304 304 170 12 chr11 31566322 31566493 -117216979 - L3 LINE CR1 -3 1574 1377 886 111 17 0 chr11 31566546 31566663 -117216809 + FLAM_C SINE Alu 1 119 -24 231 61 0 0 chr11 31566665 31566698 -117216774 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 509 299 0 15 chr11 31567533 31567670 -117215802 + MIR SINE MIR 5 139 -123 326 345 40 14 chr11 31567683 31567831 -117215641 + MIR SINE MIR 90 241 -21 369 0 0 0 chr11 31567838 31567879 -117215593 + (CA)n Simple_repeat Simple_repeat 2 42 0 1714 166 32 3 chr11 31568124 31568407 -117215065 + AluJb SINE Alu 1 291 -21 180 179 0 0 chr11 31568419 31568458 -117215014 + GA-rich Low_complexity Low_complexity 2 40 0 188 178 67 44 chr11 31569077 31569122 -117214350 - L2 LINE L2 -6 3307 3262 661 282 87 8 chr11 31569690 31569931 -117213541 - MIR SINE MIR 0 262 3 272 357 81 46 chr11 31569943 31570187 -117213285 - L2 LINE L2 -549 2765 2500 2621 185 35 80 chr11 31570187 31570872 -117212600 - MLT1E1 LTR MaLR 0 654 1 272 357 81 46 chr11 31570872 31571022 -117212450 - L2 LINE L2 -814 2500 2357 477 257 87 58 chr11 31571610 31571816 -117211656 - MIR SINE MIR -6 256 45 207 281 18 0 chr11 31571856 31571913 -117211559 + L2 LINE L2 3004 3061 -252 366 271 108 22 chr11 31571991 31572179 -117211293 + MIR SINE MIR 8 201 -61 466 322 34 34 chr11 31572214 31572391 -117211081 + L2 LINE L2 3096 3272 0 2656 216 65 39 chr11 31574563 31575730 -117207742 - L1MD2 LINE L1 0 6359 5123 382 82 66 0 chr11 31575821 31575882 -117207590 + MLT1A2 LTR MaLR 2 66 -308 306 67 0 0 chr11 31576314 31576359 -117207113 + (TC)n Simple_repeat Simple_repeat 2 46 0 1624 236 36 41 chr11 31576675 31577231 -117206241 - L1MD3 LINE L1 -1 7994 7442 3393 233 42 53 chr11 31577275 31578259 -117205213 - L1MC4a LINE L1 -748 5398 5354 1544 198 10 16 chr11 31578259 31578573 -117204899 - AluJo SINE Alu 0 312 1 3393 233 42 53 chr11 31578573 31579046 -117204426 - L1MC4a LINE L1 -792 5354 4877 * 3925 165 23 13 chr11 31579021 31579390 -117204082 - L1PA16 LINE L1 -209 5957 5593 1991 131 3 20 chr11 31579390 31579687 -117203785 + AluSx SINE Alu 1 292 -20 3925 165 23 13 chr11 31579687 31580800 -117202672 - L1PA16 LINE L1 -573 5593 4469 228 235 59 0 chr11 31581019 31581070 -117202402 - MIR SINE MIR -79 183 130 209 250 0 0 chr11 31581289 31581333 -117202139 + L3 LINE CR1 1068 1111 -466 257 340 38 13 chr11 31581343 31581502 -117201970 + MER117 DNA MER1_type 4 166 -31 308 285 173 35 chr11 31581540 31581648 -117201824 + L3 LINE CR1 1123 1215 -362 234 0 0 0 chr11 31581648 31581674 -117201798 + (TTG)n Simple_repeat Simple_repeat 2 27 0 308 285 173 35 chr11 31581674 31581825 -117201647 + L3 LINE CR1 1215 1418 -159 242 225 0 0 chr11 31582072 31582112 -117201360 + L2 LINE L2 3219 3258 -14 198 0 0 0 chr11 31582113 31582135 -117201337 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 568 259 0 0 chr11 31582499 31582615 -117200857 + L2 LINE L2 3198 3313 0 297 274 88 18 chr11 31583910 31584023 -117199449 + L2 LINE L2 3192 3312 -1 192 125 0 0 chr11 31584302 31584334 -117199138 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1147 273 78 44 chr11 31584769 31585202 -117198270 - LTR16A LTR ERVL 0 450 3 7152 50 6 0 chr11 31585317 31586413 -117197059 - L1PA7 LINE L1 0 6154 5057 396 0 0 0 chr11 31586543 31586587 -117196885 + (TG)n Simple_repeat Simple_repeat 2 45 0 1527 183 51 70 chr11 31586597 31586683 -117196789 + MLT1A1 LTR MaLR 1 87 -278 2288 104 7 0 chr11 31586683 31586982 -117196490 + AluSq SINE Alu 1 301 -12 1527 183 51 70 chr11 31586982 31587267 -117196205 + MLT1A1 LTR MaLR 87 365 0 2175 132 34 14 chr11 31587872 31588229 -117195243 + THE1B LTR MaLR 1 364 0 2176 113 0 10 chr11 31588254 31588563 -117194909 + AluSc SINE Alu 1 306 -3 459 181 30 30 chr11 31588738 31588871 -117194601 - Charlie5 DNA MER1_type -90 2522 2390 2316 108 25 3 chr11 31589246 31589608 -117193864 - L1PB1 LINE L1 0 6151 5782 247 186 0 30 chr11 31589633 31589800 -117193672 + (TA)n Simple_repeat Simple_repeat 2 163 0 450 191 0 36 chr11 31589812 31590320 -117193152 + (TA)n Simple_repeat Simple_repeat 1 489 0 354 165 0 33 chr11 31590418 31590600 -117192872 + (TA)n Simple_repeat Simple_repeat 2 177 0 964 113 6 6 chr11 31590632 31590792 -117192680 - L1PB1 LINE L1 -358 5793 5634 309 329 51 7 chr11 31590827 31590964 -117192508 - HAL1 LINE L1 -742 1765 1623 1901 130 51 10 chr11 31591368 31591661 -117191811 - AluSq SINE Alu -8 305 1 261 291 35 0 chr11 31591770 31591856 -117191616 - HAL1 LINE L1 -884 1623 1535 2374 81 0 37 chr11 31591899 31592221 -117191251 - AluSp SINE Alu -3 310 1 900 103 16 4 chr11 31592249 31592420 -117191052 - L1MB1 LINE L1 -1 6167 6025 377 307 79 82 chr11 31592422 31592826 -117190646 - HAL1 LINE L1 -1070 1437 1035 2288 93 0 7 chr11 31593803 31594105 -117189367 + AluSc SINE Alu 1 300 -9 400 323 137 47 chr11 31594733 31595179 -117188293 - L2 LINE L2 -612 2702 2217 626 306 15 48 chr11 31595798 31596069 -117187403 + L2 LINE L2 2492 2753 -561 901 216 60 5 chr11 31596095 31596294 -117187178 - MER58A DNA MER1_type -14 210 1 428 335 16 11 chr11 31597327 31597512 -117185960 + L2 LINE L2 2791 2976 -338 279 330 63 36 chr11 31597601 31597812 -117185660 + MIR SINE MIR 16 229 -33 396 0 0 0 chr11 31598455 31598499 -117184973 + (CA)n Simple_repeat Simple_repeat 2 45 0 482 243 44 77 chr11 31599099 31599280 -117184192 + MLT1L LTR MaLR 87 261 -354 745 226 52 44 chr11 31599352 31599604 -117183868 + HAL1 LINE L1 22 275 -2232 566 247 89 11 chr11 31599606 31599796 -117183676 + MLT1L LTR MaLR 411 615 0 1463 78 15 86 chr11 31599995 31600263 -117183209 - L1MA2 LINE L1 0 6304 6056 189 0 0 0 chr11 31600266 31600287 -117183185 + (TG)n Simple_repeat Simple_repeat 2 22 0 244 284 170 35 chr11 31600671 31600900 -117182572 - L3b LINE CR1 -133 1450 1191 1717 148 48 15 chr11 31601481 31601752 -117181720 - AluJb SINE Alu -24 288 9 465 137 0 0 chr11 31602414 31602487 -117180985 + MLT2B1 LTR ERVL 9 81 -439 776 245 51 65 chr11 31602618 31602969 -117180503 + MLT2B3 LTR ERVL 86 431 -123 1631 153 121 7 chr11 31602970 31603277 -117180195 - MER2 DNA MER2_type -1 343 2 339 25 0 0 chr11 31603277 31603317 -117180155 + (CA)n Simple_repeat Simple_repeat 2 41 0 324 94 0 19 chr11 31603334 31603373 -117180099 + Ricksha DNA DNA 866 903 -1143 30402 153 43 26 chr11 31603373 31609026 -117174446 + ERVL-B3-B2 LTR ERVL 2 5752 -12 2017 171 17 62 chr11 31609035 31609515 -117173957 + MLT2B2 LTR ERVL 1 464 0 406 265 49 43 chr11 31610589 31610751 -117172721 - L1ME4a LINE L1 -3 6118 5956 293 314 36 9 chr11 31610833 31611056 -117172416 - L1ME4a LINE L1 -277 5844 5616 2257 121 0 0 chr11 31611150 31611455 -117172017 - AluSx SINE Alu -7 305 1 251 0 0 56 chr11 31611560 31611596 -117171876 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 189 290 16 16 chr11 31612383 31612445 -117171027 - L3 LINE CR1 -228 1349 1288 371 269 86 0 chr11 31612623 31612716 -117170756 - MIR SINE MIR -118 144 44 2316 110 0 0 chr11 31613175 31613474 -117169998 + AluSx SINE Alu 1 299 -13 358 268 24 12 chr11 31613638 31613720 -117169752 + MIR3 SINE MIR 84 166 -42 191 346 13 58 chr11 31614009 31614113 -117169359 + L2 LINE L2 1809 1905 -1409 2089 155 3 15 chr11 31614113 31614454 -117169018 + MER1B DNA MER1_type 1 337 0 191 346 13 58 chr11 31614454 31614505 -117168967 + L2 LINE L2 1905 1957 -1357 2000 126 28 20 chr11 31614895 31615253 -117168219 + THE1C LTR MaLR 15 375 0 189 147 0 0 chr11 31615598 31615632 -117167840 + (TC)n Simple_repeat Simple_repeat 2 35 0 2662 234 42 19 chr11 31615760 31616568 -117166904 - L1ME1 LINE L1 -24 6142 5311 1072 189 4 16 chr11 31616591 31616835 -117166637 - L1MA9 LINE L1 -1 6311 6071 538 229 14 0 chr11 31616839 31616983 -117166489 - L1ME1 LINE L1 -1487 4659 4514 3485 238 62 15 chr11 31616985 31617730 -117165742 - L1ME4a LINE L1 -824 5322 4500 2349 92 13 0 chr11 31617730 31618036 -117165436 - AluSp SINE Alu -3 310 1 3485 238 62 15 chr11 31618036 31618470 -117165002 - L1ME4a LINE L1 -1646 4500 4088 2540 107 0 3 chr11 31618470 31618833 -117164639 - THE1C LTR MaLR 0 375 14 1819 235 61 16 chr11 31618848 31619418 -117164054 - L1ME4a LINE L1 -2054 4092 3497 879 245 89 3 chr11 31619449 31619821 -117163651 - L1ME4a LINE L1 -2742 3404 3001 392 292 157 11 chr11 31620597 31620618 -117162854 + MIR SINE MIR 3 20 -242 9672 169 20 18 chr11 31620618 31621282 -117162190 + L1PA15 LINE L1 3499 4160 -2005 2115 142 6 3 chr11 31621282 31621593 -117161879 + AluSq SINE Alu 1 312 -1 9672 169 20 18 chr11 31621593 31623577 -117159895 + L1PA15 LINE L1 4160 6165 0 392 292 157 11 chr11 31623577 31623733 -117159739 + MIR SINE MIR 20 206 -56 214 326 37 59 chr11 31623738 31623873 -117159599 + MIR SINE MIR 10 141 -67 385 177 18 18 chr11 31623881 31623994 -117159478 + (TAGA)n Simple_repeat Simple_repeat 1 113 0 1108 286 62 47 chr11 31623995 31624811 -117158661 + L2 LINE L2 2364 3197 -116 228 67 0 0 chr11 31624811 31624841 -117158631 + (CA)n Simple_repeat Simple_repeat 1 30 0 1108 286 62 47 chr11 31624841 31624927 -117158545 + L2 LINE L2 3197 3280 -33 204 200 0 0 chr11 31624954 31624999 -117158473 + C-rich Low_complexity Low_complexity 1 45 0 202 330 212 0 chr11 31625156 31625274 -117158198 - L2 LINE L2 -7 3265 3123 210 224 47 47 chr11 31625432 31625517 -117157955 + MIR3 SINE MIR 123 207 -1 217 89 44 0 chr11 31626354 31626399 -117157073 + (CA)n Simple_repeat Simple_repeat 2 48 0 510 276 109 6 chr11 31626453 31626609 -117156863 - MIR SINE MIR -59 203 32 601 222 0 8 chr11 31626692 31626809 -117156663 - MER5B DNA MER1_type 0 178 63 710 182 0 0 chr11 31626814 31626935 -117156537 - AluJb SINE Alu -2 310 190 281 175 0 95 chr11 31626938 31627001 -117156471 - MER5B DNA MER1_type -120 58 2 376 309 22 36 chr11 31627006 31627145 -117156327 + MER5A DNA MER1_type 52 188 -1 227 340 47 0 chr11 31627194 31627300 -117156172 + MIR SINE MIR 43 153 -55 435 263 45 23 chr11 31628002 31628135 -117155337 - MER5B DNA MER1_type -35 143 8 24 85 0 0 chr11 31628865 31628924 -117154548 + AT_rich Low_complexity Low_complexity 1 59 0 238 206 29 69 chr11 31629310 31629412 -117154060 + MER103 DNA DNA 66 163 -3 377 297 109 17 chr11 31629723 31629898 -117153574 - MIR SINE MIR -1 261 71 311 341 38 30 chr11 31630372 31630504 -117152968 + MIR SINE MIR 124 256 -6 335 171 34 111 chr11 31631352 31631469 -117152003 - MIR SINE MIR -50 212 105 2148 114 0 13 chr11 31631618 31631925 -117151547 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr11 31632163 31632184 -117151288 + AT_rich Low_complexity Low_complexity 1 21 0 202 365 0 0 chr11 31633404 31633467 -117150005 - L2 LINE L2 -9 3263 3201 229 278 56 37 chr11 31633520 31633628 -117149844 - L2 LINE L2 -4 3268 3159 685 277 117 73 chr11 31633684 31634260 -117149212 + L2 LINE L2 2592 3188 -125 965 219 136 79 chr11 31634260 31634629 -117148843 + L2 LINE L2 2318 2713 -601 2168 103 6 32 chr11 31634629 31634941 -117148531 + AluSq SINE Alu 1 304 -9 965 219 136 79 chr11 31634941 31634977 -117148495 + L2 LINE L2 2713 2746 -568 775 151 0 8 chr11 31634981 31635100 -117148372 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr11 31635100 31635121 -117148351 + AT_rich Low_complexity Low_complexity 1 21 0 209 68 136 23 chr11 31635133 31635177 -117148295 + L2 LINE L2 2736 2784 -530 1348 162 30 60 chr11 31635188 31635522 -117147950 + MER33 DNA MER1_type 1 324 0 3841 240 82 141 chr11 31635537 31636139 -117147333 - L2 LINE L2 -1095 2219 1583 2180 134 0 6 chr11 31636139 31636453 -117147019 + AluSx SINE Alu 1 312 0 3841 240 82 141 chr11 31636453 31637241 -117146231 - L2 LINE L2 -1731 1583 925 601 135 0 0 chr11 31637241 31637330 -117146142 + 5S rRNA rRNA 2 90 -31 3841 240 82 141 chr11 31637330 31638170 -117145302 - L2 LINE L2 -2389 925 37 22 0 0 0 chr11 31638994 31639016 -117144456 + AT_rich Low_complexity Low_complexity 1 22 0 250 353 88 22 chr11 31639110 31639246 -117144226 - L2 LINE L2 -5 3267 3123 281 326 131 11 chr11 31639283 31639458 -117144014 - L2 LINE L2 -236 3036 2841 1106 178 0 72 chr11 31640206 31640442 -117143030 - MER20 DNA MER1_type 0 219 1 211 224 0 17 chr11 31640534 31640592 -117142880 + (CAA)n Simple_repeat Simple_repeat 3 59 0 194 311 151 19 chr11 31640625 31640731 -117142741 + L2 LINE L2 3122 3241 -31 1611 141 48 12 chr11 31640898 31641146 -117142326 + AluSq SINE Alu 5 261 -52 522 132 9 19 chr11 31641147 31641253 -117142219 + GA-rich Low_complexity Low_complexity 4 108 0 1218 61 0 22 chr11 31641255 31641435 -117142037 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 747 282 29 96 chr11 31641923 31642370 -117141102 + MLT1J LTR MaLR 1 417 -94 340 383 40 7 chr11 31643063 31643212 -117140260 - L2 LINE L2 -18 3254 3101 2583 153 24 2 chr11 31643423 31643840 -117139632 + MSTB LTR MaLR 1 426 0 2353 91 10 0 chr11 31644102 31644410 -117139062 - AluSq SINE Alu -2 311 1 436 315 7 7 chr11 31644888 31645031 -117138441 - MIR SINE MIR -32 230 88 286 221 0 65 chr11 31645082 31645159 -117138313 + L1MC4a LINE L1 7322 7393 -415 2112 149 3 0 chr11 31645203 31645511 -117137961 + AluSx SINE Alu 3 311 -1 43 35 0 0 chr11 31645652 31645709 -117137763 + AT_rich Low_complexity Low_complexity 1 57 0 492 283 59 33 chr11 31645764 31646153 -117137319 + L1MC5 LINE L1 7540 7938 -23 198 0 0 0 chr11 31646394 31646416 -117137056 + (T)n Simple_repeat Simple_repeat 1 22 0 837 176 0 0 chr11 31647438 31647569 -117135903 - FLAM_C SINE Alu -1 132 2 797 187 47 0 chr11 31647642 31647813 -117135659 - MER3 DNA MER1_type 0 209 31 280 346 30 0 chr11 31648751 31648852 -117134620 - L2 LINE L2 -258 3055 2952 183 409 21 0 chr11 31648900 31648993 -117134479 - L2 LINE L2 -430 2884 2790 195 378 11 11 chr11 31649138 31649228 -117134244 - L2 LINE L2 -296 2976 2887 325 310 110 0 chr11 31650483 31650638 -117132834 - L1ME4a LINE L1 -113 6008 5837 183 303 30 15 chr11 31650698 31650764 -117132708 + MIR SINE MIR 9 75 -187 209 207 35 35 chr11 31650795 31650853 -117132619 + MIR SINE MIR 173 230 -32 310 284 61 68 chr11 31652271 31652419 -117131053 + L1MEd LINE L1 3 149 -5970 24 0 0 0 chr11 31652846 31652870 -117130602 + AT_rich Low_complexity Low_complexity 1 24 0 323 378 33 22 chr11 31652876 31653151 -117130321 + L1 LINE L1 4934 5211 -935 185 446 0 9 chr11 31653166 31653278 -117130194 - L3 LINE CR1 -946 631 521 198 0 0 0 chr11 31653419 31653441 -117130031 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 192 262 0 0 chr11 31653452 31653494 -117129978 - MIR SINE MIR -10 252 211 610 234 8 0 chr11 31653542 31653666 -117129806 - L2 LINE L2 0 3313 3189 412 258 42 90 chr11 31654689 31654856 -117128616 - MIR SINE MIR -98 164 6 1683 203 37 8 chr11 31655662 31656017 -117127455 - MLT1A1 LTR MaLR 0 365 1 809 297 26 4 chr11 31656065 31656338 -117127134 + LTR16A LTR ERVL 166 444 -6 232 197 0 14 chr11 31657196 31657267 -117126205 - L1ME4a LINE L1 0 6121 6052 713 218 0 0 chr11 31657333 31657466 -117126006 - FLAM_A SINE Alu 0 133 1 203 272 88 61 chr11 31657739 31657853 -117125619 - L2 LINE L2 -4 3268 3152 485 222 208 0 chr11 31657877 31658021 -117125451 - L2 LINE L2 -2 3311 3138 1662 268 12 33 chr11 31658021 31658533 -117124939 + MER74B LTR ERVL 55 555 -67 1204 223 39 18 chr11 31658592 31658929 -117124543 - MER2 DNA MER2_type 0 344 1 371 288 0 34 chr11 31659118 31659264 -117124208 + C-rich Low_complexity Low_complexity 2 142 0 409 222 78 11 chr11 31659378 31659468 -117124004 - MER5B DNA MER1_type -81 97 2 2287 59 0 18 chr11 31662845 31663131 -117120341 - AluY SINE Alu -30 281 1 214 264 11 81 chr11 31663439 31663526 -117119946 - MER91A DNA MER1_type -114 82 2 218 271 43 14 chr11 31663918 31663988 -117119484 - MIR SINE MIR -117 145 74 267 268 171 0 chr11 31664268 31664350 -117119122 + MIR SINE MIR 58 153 -109 499 216 50 16 chr11 31665832 31665960 -117117512 + MIR SINE MIR 55 194 -65 2263 107 0 13 chr11 31666052 31666369 -117117103 + AluSq SINE Alu 1 313 0 2133 129 0 0 chr11 31666739 31667033 -117116439 - AluSg SINE Alu -15 295 2 2245 108 0 0 chr11 31667043 31667340 -117116132 - AluSx SINE Alu -15 297 1 1564 160 92 34 chr11 31667807 31668132 -117115340 + MER2 DNA MER2_type 1 344 0 2098 108 7 0 chr11 31668273 31668579 -117114893 + AluSx SINE Alu 1 308 -4 524 232 93 0 chr11 31670286 31670437 -117113035 + MIR3 SINE MIR 36 200 -8 1577 161 92 4 chr11 31671145 31671418 -117112054 - AluJo SINE Alu -15 297 1 1104 214 54 67 chr11 31671748 31672462 -117111010 - L1MEc LINE L1 -5095 1301 528 1868 163 7 3 chr11 31672545 31672851 -117110621 - AluSx SINE Alu -3 309 3 743 221 46 5 chr11 31672871 31673066 -117110406 + HAL1 LINE L1 1397 1599 -908 1378 237 94 18 chr11 31673066 31673500 -117109972 - MLT1C LTR MaLR 0 467 1 571 211 26 75 chr11 31673500 31673641 -117109831 + HAL1 LINE L1 1595 1741 -766 1021 185 0 0 chr11 31673641 31673798 -117109674 + FRAM SINE Alu 1 157 -9 1899 117 71 0 chr11 31673805 31674086 -117109386 + AluSx SINE Alu 1 301 -11 571 211 26 75 chr11 31674086 31674163 -117109309 + HAL1 LINE L1 1747 1810 -697 2744 168 28 16 chr11 31674170 31674676 -117108796 - MLT2B1 LTR ERVL -8 512 1 778 253 36 30 chr11 31674676 31674981 -117108491 + HAL1 LINE L1 1809 2115 -392 22 35 0 0 chr11 31675053 31675082 -117108390 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 31675100 31675138 -117108334 + AT_rich Low_complexity Low_complexity 1 38 0 339 299 27 17 chr11 31675549 31675680 -117107792 + MIR SINE MIR 2 136 -72 657 201 82 25 chr11 31675708 31675867 -117107605 + FAM SINE Alu 1 168 -7 333 306 56 19 chr11 31675917 31676025 -117107447 + MER5A DNA MER1_type 60 171 -18 227 320 49 66 chr11 31675920 31676042 -117107430 - MER5A DNA MER1_type -51 138 19 * 30 0 0 0 chr11 31676188 31676218 -117107254 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 31677134 31677165 -117106307 + AT_rich Low_complexity Low_complexity 1 31 0 995 199 64 66 chr11 31678534 31678927 -117104545 + L1M4 LINE L1 2974 3365 -2781 1513 180 34 82 chr11 31679244 31679281 -117104191 + AluJo SINE Alu 1 38 -274 1800 111 0 4 chr11 31679281 31679525 -117103947 - AluSq SINE Alu -70 243 1 1513 180 34 82 chr11 31679525 31679815 -117103657 + AluJo SINE Alu 38 312 0 2061 152 36 3 chr11 31879981 31880317 -116903155 - MER7A DNA MER2_type 0 346 2 340 293 138 9 chr11 31880333 31880449 -116903023 + L2 LINE L2 3142 3272 0 2790 242 39 22 chr11 31881119 31882347 -116901125 - L1ME1 LINE L1 -8 6158 4909 872 178 32 24 chr11 31882347 31882655 -116900817 - MLT1A1 LTR MaLR 0 365 10 328 320 34 34 chr11 31882731 31882878 -116900594 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31882972 31883133 -116900339 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31883274 31883545 -116899927 + L2 LINE L2 2685 2998 -274 202 280 27 13 chr11 31884109 31884184 -116899288 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31884592 31884613 -116898859 + AT_rich Low_complexity Low_complexity 1 21 0 193 354 0 52 chr11 31885260 31885355 -116898117 + MIR SINE MIR 4 93 -115 26 0 0 0 chr11 31885495 31885521 -116897951 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31886112 31886371 -116897101 - MIR SINE MIR 0 262 28 1771 253 60 45 chr11 31886431 31887128 -116896344 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31887530 31887604 -116895868 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31887599 31887819 -116895653 + L2 LINE L2 1043 1260 -2054 845 163 4 145 chr11 31887839 31888115 -116895357 + Charlie4a DNA MER1_type 74 310 -198 952 260 4 32 chr11 31888147 31888424 -116895048 + MLT1G LTR MaLR 30 298 -292 1047 280 17 47 chr11 31888499 31888970 -116894502 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31889051 31889295 -116894177 + (TA)n Simple_repeat Simple_repeat 1 257 0 330 226 0 0 chr11 31889299 31889373 -116894099 - FLAM_A SINE Alu -66 67 4 1385 211 22 0 chr11 31889776 31890093 -116893379 + MER33 DNA MER1_type 1 324 0 209 301 21 0 chr11 31890123 31890216 -116893256 + L2 LINE L2 1991 2085 -1229 364 306 8 16 chr11 31890228 31890349 -116893123 - MER5A DNA MER1_type -2 187 68 319 298 124 70 chr11 31890387 31890743 -116892729 + L2 LINE L2 2138 2512 -802 704 197 53 43 chr11 31890799 31890987 -116892485 - MER20 DNA MER1_type -1 218 29 245 347 133 0 chr11 31892175 31892273 -116891199 + L2 LINE L2 3142 3252 -20 316 208 144 40 chr11 31893861 31893986 -116889486 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31894249 31894274 -116889198 + AT_rich Low_complexity Low_complexity 1 25 0 1288 169 260 32 chr11 31895083 31895521 -116887951 - MER92B LTR ERV1 0 636 99 1128 185 56 56 chr11 31895794 31896118 -116887354 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31896256 31896280 -116887192 + AT_rich Low_complexity Low_complexity 1 24 0 341 316 196 0 chr11 31896303 31896436 -116887036 - MER5A DNA MER1_type -10 179 21 321 162 68 14 chr11 31897049 31897123 -116886349 - MER53 DNA DNA -111 78 1 313 164 0 0 chr11 31897219 31897274 -116886198 + FRAM/FAM SINE Alu 29 78 -97 2226 122 0 0 chr11 31897756 31898050 -116885422 + AluSx SINE Alu 1 294 -18 5279 227 41 21 chr11 31898050 31900280 -116883192 - L1PA13 LINE L1 -4309 2488 142 1146 268 45 37 chr11 31900478 31900966 -116882506 - L1ME2 LINE L1 -10 6154 5663 1268 232 109 20 chr11 31900967 31901499 -116881973 - L1ME2 LINE L1 -1154 4992 4432 1007 126 117 5 chr11 31901510 31901716 -116881756 - AluSg/x SINE Alu -1 308 80 749 201 103 60 chr11 31901856 31901928 -116881544 - L1ME2 LINE L1 -1655 4491 4424 1597 114 5 0 chr11 31901928 31902147 -116881325 - AluSq SINE Alu -2 311 92 749 201 103 60 chr11 31902147 31902541 -116880931 - L1ME2 LINE L1 -1722 4424 4005 448 172 11 0 chr11 31902562 31902655 -116880817 - L1M4 LINE L1 -1197 4949 4856 261 250 8 89 chr11 31902998 31903122 -116880350 - MLT1L LTR MaLR -384 231 118 1906 151 0 3 chr11 31903139 31903465 -116880007 - AluSx SINE Alu 0 325 1 511 262 26 2 chr11 31903484 31903655 -116879817 + L1ME1 LINE L1 6007 6178 0 196 184 0 0 chr11 31904301 31904339 -116879133 + L2 LINE L2 3272 3309 -4 2122 163 54 15 chr11 31904394 31904804 -116878668 + MSTB LTR MaLR 1 426 0 347 273 41 76 chr11 31904934 31905106 -116878366 - MLT1I LTR MaLR -10 399 234 223 216 14 14 chr11 31905331 31905405 -116878067 + A-rich Low_complexity Low_complexity 2 75 0 283 235 102 20 chr11 31905692 31905790 -116877682 + L2 LINE L2 3198 3303 -10 288 211 0 14 chr11 31905925 31905996 -116877476 - LTR33 LTR ERVL -2 519 450 2000 172 0 0 chr11 31906240 31906543 -116876929 + AluSx SINE Alu 1 303 -9 324 120 0 0 chr11 31907954 31908004 -116875468 + (T)n Simple_repeat Simple_repeat 1 50 0 1228 310 52 14 chr11 31908131 31908648 -116874824 - L2 LINE L2 -260 3053 2519 326 171 57 14 chr11 31908958 31909028 -116874444 + AluJo SINE Alu 64 136 -166 552 266 39 29 chr11 31909048 31909255 -116874217 + L2 LINE L2 3067 3275 -38 472 214 121 29 chr11 31909401 31909607 -116873865 - L1MC5 LINE L1 -49 7912 7688 277 280 80 10 chr11 31909972 31910072 -116873400 - MLT1H LTR MaLR -205 344 238 576 39 26 0 chr11 31910565 31910643 -116872829 + MADE1 DNA Mariner 1 80 0 4840 156 34 17 chr11 31910959 31912241 -116871231 - L1PA16 LINE L1 -1 6165 4873 1125 251 40 3 chr11 31912247 31912625 -116870847 - L1 LINE L1 -2832 3314 2923 1455 235 37 16 chr11 31912630 31913059 -116870413 - L1PA13 LINE L1 -4610 2228 1791 487 292 21 17 chr11 31913272 31913511 -116869961 - L1PA13 LINE L1 -5276 1562 1348 1057 323 39 42 chr11 31913551 31914074 -116869398 - L1M2 LINE L1 -6214 624 62 22 0 0 0 chr11 31914151 31914173 -116869299 + AT_rich Low_complexity Low_complexity 1 22 0 1225 259 73 153 chr11 31914304 31915165 -116868307 + L2 LINE L2 1876 2649 -665 1309 228 92 69 chr11 31915165 31915673 -116867799 + MLT2B1 LTR ERVL 1 520 0 1225 259 73 153 chr11 31915673 31915801 -116867671 + L2 LINE L2 2649 2786 -528 459 0 0 0 chr11 31915811 31915846 -116867626 + (CA)n Simple_repeat Simple_repeat 1 86 0 459 0 0 0 chr11 31915846 31915897 -116867575 + (CA)n Simple_repeat Simple_repeat 2 52 0 431 280 92 46 chr11 31916280 31916673 -116866799 - L1MC4a LINE L1 -1869 5939 5529 22 70 0 0 chr11 31916739 31916782 -116866690 + AT_rich Low_complexity Low_complexity 1 43 0 1964 156 33 0 chr11 31916987 31917289 -116866183 - AluSx SINE Alu 0 312 1 372 331 105 34 chr11 31917379 31917732 -116865740 - L1MC4a LINE L1 -1099 5047 4670 206 271 42 0 chr11 31918658 31918706 -116864766 - MIR SINE MIR -11 251 202 227 363 12 0 chr11 31918740 31918820 -116864652 + L2 LINE L2 3183 3263 -9 346 336 46 0 chr11 31921043 31921174 -116862298 - L2 LINE L2 0 3272 3136 549 326 60 73 chr11 31921194 31921888 -116861584 - L2 LINE L2 -278 2994 2315 323 356 19 44 chr11 31921973 31922133 -116861339 - MIR SINE MIR -101 161 6 845 318 139 7 chr11 31922236 31922969 -116860503 - HAL1 LINE L1 -171 2336 1507 607 304 76 29 chr11 31923022 31923364 -116860108 - HAL1 LINE L1 -1556 951 594 473 287 127 19 chr11 31923575 31923882 -116859590 - HAL1 LINE L1 -2167 340 1 1749 131 0 4 chr11 31924004 31924256 -116859216 + AluSq SINE Alu 54 304 -9 293 331 84 11 chr11 31924268 31924427 -116859045 + MIR SINE MIR 28 199 -63 182 336 42 17 chr11 31924492 31924611 -116858861 - L3b LINE CR1 -351 1232 1111 850 313 89 38 chr11 31925221 31925960 -116857512 + L1MEc LINE L1 36 812 -5584 411 310 95 65 chr11 31926101 31926333 -116857139 + L1MEc LINE L1 1623 1861 -4535 42241 39 3 1 chr11 31926336 31932479 -116850993 + L1PA4 LINE L1 1 6152 -3 496 235 136 22 chr11 31932484 31932756 -116850716 + L1MEc LINE L1 1850 2152 -4244 940 267 38 14 chr11 31932785 31933156 -116850316 + L1MEc LINE L1 2968 3347 -2868 429 257 18 18 chr11 31933379 31933488 -116849984 + MIR SINE MIR 4 112 -150 354 240 198 0 chr11 31933483 31933579 -116849893 + L2 LINE L2 3188 3302 -11 * 218 335 65 25 chr11 31933584 31933726 -116849746 - MIR SINE MIR -62 146 1 553 248 111 43 chr11 31934530 31934764 -116848708 - L1MC5 LINE L1 -50 7911 7662 1366 210 83 4 chr11 31934919 31935328 -116848144 + L1ME1 LINE L1 5204 5645 -521 556 171 16 39 chr11 31935328 31935457 -116848015 - MLT1B LTR MaLR -256 134 9 3108 77 2 19 chr11 31935547 31935974 -116847498 - L1PA10 LINE L1 -6 6162 5743 1830 197 79 5 chr11 31936005 31936421 -116847051 + L1ME1 LINE L1 5672 6118 -48 295 254 0 16 chr11 31936422 31936485 -116846987 - L2 LINE L2 -59 3254 3193 1879 161 10 72 chr11 31936643 31937034 -116846438 - MLT1B LTR MaLR -17 373 7 1600 194 47 73 chr11 31937544 31938046 -116845426 - MER41B LTR ERV1 -10 597 99 247 274 24 48 chr11 31938578 31938702 -116844770 + LTR33A LTR ERVL 402 522 -1 341 271 42 0 chr11 31938750 31938846 -116844626 - MIR3 SINE MIR -11 197 98 249 57 0 0 chr11 31939630 31939665 -116843807 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1539 244 3 26 chr11 31940821 31941171 -116842301 - MLT1I LTR MaLR 0 409 84 1286 208 13 20 chr11 31941329 31941632 -116841840 - L1MD2 LINE L1 -16 6343 6043 1799 189 106 5 chr11 31941638 31942211 -116841261 - L1MC4 LINE L1 -704 5655 5295 3911 26 0 0 chr11 31942218 31942678 -116840794 - L1PA2 LINE L1 -3 6152 5693 708 227 5 0 chr11 31942678 31942863 -116840609 + L1M4 LINE L1 5123 5308 -838 1734 127 8 4 chr11 31943057 31943310 -116840162 + AluSq SINE Alu 46 299 -14 15437 181 25 17 chr11 31943320 31947583 -116835889 + L1PA15 LINE L1 1864 6159 -6 21 0 0 0 chr11 31947735 31947756 -116835716 + AT_rich Low_complexity Low_complexity 1 21 0 365 268 137 55 chr11 31947891 31948220 -116835252 - L1MC4a LINE L1 -1926 5882 5527 240 336 75 0 chr11 31949017 31949124 -116834348 + L2 LINE L2 2131 2245 -1069 283 384 20 27 chr11 31949220 31949366 -116834106 + L2 LINE L2 3128 3272 0 252 340 103 26 chr11 31950760 31950916 -116832556 + MIR SINE MIR 94 261 -1 1561 212 11 45 chr11 31951202 31951580 -116831892 - MLT1A1 LTR MaLR 0 365 1 2292 71 0 17 chr11 31951907 31952204 -116831268 - AluY SINE Alu -19 292 1 1350 215 67 53 chr11 31952618 31953110 -116830362 + MER39 LTR ERV1 2 682 -25 862 191 106 0 chr11 31953195 31953384 -116830088 + MER3 DNA MER1_type 1 209 0 318 216 10 31 chr11 31953582 31953679 -116829793 + L1M4 LINE L1 2159 2253 -3893 623 290 74 57 chr11 31953683 31954265 -116829207 - L1MEd LINE L1 -4940 1179 588 443 312 30 39 chr11 31954402 31954633 -116828839 - L1MEd LINE L1 -5735 384 156 2079 152 36 3 chr11 31955429 31955765 -116827707 - MER7A DNA MER2_type 0 346 2 339 293 138 9 chr11 31955781 31955897 -116827575 + L2 LINE L2 3142 3272 0 3030 242 39 22 chr11 31956567 31957795 -116825677 - L1ME1 LINE L1 -8 6158 4909 934 178 32 24 chr11 31957795 31958103 -116825369 - MLT1A1 LTR MaLR 0 365 10 373 326 20 20 chr11 31958179 31958326 -116825146 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31958420 31958581 -116824891 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31958722 31958993 -116824479 + L2 LINE L2 2685 2998 -274 195 280 27 13 chr11 31959558 31959633 -116823839 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31960041 31960062 -116823410 + AT_rich Low_complexity Low_complexity 1 21 0 194 351 0 52 chr11 31960727 31960804 -116822668 + MIR SINE MIR 20 92 -170 26 0 0 0 chr11 31960944 31960970 -116822502 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31961561 31961820 -116821652 - MIR SINE MIR 0 262 28 1963 247 65 49 chr11 31961880 31962577 -116820895 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31962979 31963053 -116820419 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31963048 31963268 -116820204 + L2 LINE L2 1043 1260 -2054 916 163 4 145 chr11 31963288 31963564 -116819908 + Charlie4a DNA MER1_type 74 310 -198 1046 260 4 32 chr11 31963596 31963873 -116819599 + MLT1G LTR MaLR 30 298 -292 1176 280 17 47 chr11 31963948 31964419 -116819053 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31964500 31964744 -116818728 + (TA)n Simple_repeat Simple_repeat 1 257 0 353 226 0 0 chr11 31964748 31964822 -116818650 - FLAM_A SINE Alu -66 67 4 1417 211 22 0 chr11 31965225 31965542 -116817930 + MER33 DNA MER1_type 1 324 0 204 301 21 0 chr11 31965572 31965665 -116817807 + L2 LINE L2 1991 2085 -1229 359 306 8 16 chr11 31965677 31965798 -116817674 - MER5A DNA MER1_type -2 187 68 315 298 124 70 chr11 31965836 31966192 -116817280 + L2 LINE L2 2138 2512 -802 768 197 53 43 chr11 31966248 31966436 -116817036 - MER20 DNA MER1_type -1 218 29 247 347 133 0 chr11 31967624 31967722 -116815750 + L2 LINE L2 3142 3252 -20 313 208 144 40 chr11 31969310 31969435 -116814037 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31969698 31969723 -116813749 + AT_rich Low_complexity Low_complexity 1 25 0 1435 176 229 36 chr11 31970532 31971024 -116812448 - MER92B LTR ERV1 0 636 1 1218 185 56 56 chr11 31971242 31971566 -116811906 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31971704 31971728 -116811744 + AT_rich Low_complexity Low_complexity 1 24 0 336 316 196 0 chr11 31971751 31971884 -116811588 - MER5A DNA MER1_type -10 179 21 383 160 53 13 chr11 31972499 31972574 -116810898 - MER53 DNA DNA -111 78 1 332 185 0 0 chr11 31972670 31972724 -116810748 + FRAM/FAM SINE Alu 29 82 -93 2290 56 0 62 chr11 31973207 31973513 -116809959 + AluY SINE Alu 1 287 -24 1799 146 48 10 chr11 31973670 31973964 -116809508 - AluSx SINE Alu -7 305 1 472 266 122 61 chr11 31974763 31975090 -116808382 - L1ME3 LINE L1 -277 5885 5539 399 304 101 35 chr11 31975373 31975630 -116807842 - L1ME3 LINE L1 -942 5204 4931 341 254 152 50 chr11 31975705 31976047 -116807425 - L1ME3 LINE L1 -1341 4805 4429 8810 128 67 11 chr11 31978827 31979739 -116803733 + Tigger1 DNA MER2_type 1 861 -1557 2142 123 3 0 chr11 31979739 31980047 -116803425 - AluY SINE Alu -2 309 1 8810 128 67 11 chr11 31980047 31981310 -116802162 + Tigger1 DNA MER2_type 861 2365 -53 198 0 0 0 chr11 31981310 31981332 -116802140 + (TG)n Simple_repeat Simple_repeat 1 22 0 8810 128 67 11 chr11 31981332 31981390 -116802082 + Tigger1 DNA MER2_type 2365 2418 0 3708 171 74 53 chr11 31982559 31983555 -116799917 + Tigger6a DNA MER2_type 2 1014 -69 512 158 165 0 chr11 31983815 31983948 -116799524 + MER106B DNA MER1_type 905 1059 0 1743 121 8 12 chr11 31984053 31984310 -116799162 - AluSc SINE Alu -10 299 44 21 0 0 0 chr11 31985644 31985665 -116797807 + AT_rich Low_complexity Low_complexity 1 21 0 2221 112 3 3 chr11 31986830 31987135 -116796337 + AluSg SINE Alu 1 305 -5 603 92 0 0 chr11 31987919 31988006 -116795466 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 286 130 0 0 chr11 31988036 31988082 -116795390 + MLT2C1 LTR ERVL 352 397 0 959 321 82 21 chr11 31988331 31988817 -116794655 + MLT1K LTR MaLR 14 529 -59 2569 55 10 0 chr11 31988952 31989260 -116794212 - AluY SINE Alu 0 311 1 420 83 0 0 chr11 31989517 31989577 -116793895 + MLT1A1 LTR MaLR 260 319 -46 530 287 41 26 chr11 31990291 31990312 -116793160 - MIR SINE MIR -42 220 201 1956 181 14 8 chr11 31990312 31990671 -116792801 - MLT1A1 LTR MaLR -4 361 1 530 287 41 26 chr11 31990671 31990844 -116792628 - MIR SINE MIR -61 201 23 872 123 6 49 chr11 31991199 31991361 -116792111 + L1P4 LINE L1 5664 5818 -347 2204 137 26 13 chr11 31991379 31991787 -116791685 + L1PA15 LINE L1 5779 6191 0 538 315 79 9 chr11 31992135 31992325 -116791147 + MIR SINE MIR 20 228 -34 2272 97 13 0 chr11 31992325 31992623 -116790849 + AluSx SINE Alu 1 302 -10 538 315 79 9 chr11 31992623 31992648 -116790824 + MIR SINE MIR 228 250 -12 607 180 66 49 chr11 31992673 31992856 -116790616 - MER53 DNA DNA 0 189 4 247 286 16 0 chr11 31993064 31993127 -116790345 + L2 LINE L2 3245 3308 -5 1221 62 0 0 chr11 31993266 31993410 -116790062 - AluSq SINE Alu -10 303 160 921 71 0 0 chr11 31993410 31993523 -116789949 - AluSq SINE Alu -189 123 11 330 293 62 78 chr11 31994096 31994352 -116789120 + L1ME4a LINE L1 5680 5931 -190 264 146 61 24 chr11 31994416 31994498 -116788974 + L1ME4a LINE L1 6033 6117 -4 488 287 21 48 chr11 31994599 31994787 -116788685 + MIR SINE MIR 80 262 0 269 213 16 0 chr11 31994843 31994904 -116788568 + CT-rich Low_complexity Low_complexity 3 64 0 466 216 72 0 chr11 31995939 31996050 -116787422 + L2 LINE L2 3195 3313 0 492 266 43 30 chr11 31996865 31997038 -116786434 + MIR SINE MIR 8 184 -59 550 202 250 12 chr11 31997304 31997472 -116786000 + MIR SINE MIR 4 211 -51 215 210 86 123 chr11 31998466 31998547 -116784925 - MER91A DNA MER1_type -115 81 4 232 205 26 64 chr11 31998973 31999051 -116784421 + MLT1K LTR MaLR 514 588 0 338 290 30 38 chr11 31999287 31999418 -116784054 - MIR SINE MIR -59 149 20 354 283 0 0 chr11 31999611 31999703 -116783769 - MER96 DNA MER1_type? 0 175 84 418 271 41 16 chr11 32000241 32000363 -116783109 - MIR SINE MIR -68 140 16 332 301 76 14 chr11 32000455 32000599 -116782873 - MIR SINE MIR -46 216 65 1675 250 34 44 chr11 32000701 32001271 -116782201 - MLT1F1 LTR MaLR -4 563 1 272 67 67 17 chr11 32002793 32002853 -116780619 + CT-rich Low_complexity Low_complexity 4 66 0 417 241 149 62 chr11 32002887 32003082 -116780390 + L2 LINE L2 3102 3313 0 367 315 54 38 chr11 32003190 32003374 -116780098 - MIR SINE MIR -48 214 28 1030 255 170 21 chr11 32006740 32007231 -116776241 + L2 LINE L2 2743 3313 0 488 268 72 17 chr11 32007335 32007539 -116775933 - MIR SINE MIR -2 260 47 1134 169 29 5 chr11 32007562 32007769 -116775703 + MER20 DNA MER1_type 8 219 0 990 286 70 5 chr11 32007819 32008263 -116775209 + L1ME4a LINE L1 5532 6004 -117 22 35 0 0 chr11 32008324 32008353 -116775119 + AT_rich Low_complexity Low_complexity 1 29 0 358 156 0 5 chr11 32008459 32008524 -116774948 + FRAM SINE Alu 73 127 -39 184 264 66 33 chr11 32009068 32009159 -116774313 + MIR SINE MIR 28 121 -141 437 311 31 6 chr11 32010964 32011125 -116772347 + L2 LINE L2 2785 2949 -365 * 564 333 125 11 chr11 32011119 32011470 -116772002 - L2 LINE L2 -39 3274 2884 258 259 48 116 chr11 32011645 32011792 -116771680 - MIR3 SINE MIR -69 139 3 414 260 31 72 chr11 32012576 32012799 -116770673 + L1ME LINE L1 5523 5736 -385 337 260 73 27 chr11 32012892 32013042 -116770430 - MER103 DNA DNA -7 159 3 261 176 118 50 chr11 32013781 32013900 -116769572 + L1ME LINE L1 5768 5894 -227 1712 211 163 22 chr11 32014089 32014234 -116769238 - L1MD3 LINE L1 -8 7987 7864 2331 114 19 27 chr11 32014234 32014610 -116768862 + THE1C LTR MaLR 3 375 0 1712 211 163 22 chr11 32014610 32015573 -116767899 - L1MD3 LINE L1 -131 7864 6643 214 209 58 12 chr11 32015579 32015665 -116767807 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 434 131 48 0 chr11 32015758 32015903 -116767569 + (TA)n Simple_repeat Simple_repeat 1 152 0 25 0 0 0 chr11 32015928 32015953 -116767519 + AT_rich Low_complexity Low_complexity 1 25 0 1481 238 151 2 chr11 32015962 32016378 -116767094 - MLT2B1 LTR ERVL -40 480 3 597 62 10 21 chr11 32016379 32016476 -116766996 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 3978 228 43 41 chr11 32016477 32017805 -116765667 - L1MC4a LINE L1 -1216 6592 5262 492 225 64 77 chr11 32018064 32018265 -116765207 + MIR SINE MIR 6 202 -53 21 0 0 0 chr11 32019050 32019071 -116764401 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 32019277 32019298 -116764174 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1571 167 4 11 chr11 32019298 32019567 -116763905 - AluJo SINE Alu -32 280 14 288 299 37 9 chr11 32019585 32019692 -116763780 + MER20B DNA MER1_type 2 111 -672 2468 203 57 69 chr11 32019711 32020446 -116763026 + MER21B LTR ERV1 13 738 -125 1063 207 66 41 chr11 32020494 32021068 -116762404 + MER20B DNA MER1_type 135 783 0 514 259 63 0 chr11 32021087 32021230 -116762242 - MIR SINE MIR -83 179 28 2109 244 30 20 chr11 32022102 32022664 -116760808 + MER69 DNA AcHobo 1 568 -1958 1691 178 99 6 chr11 32022662 32023135 -116760337 + MER69 DNA AcHobo 2010 2526 0 * 564 321 72 8 chr11 32023151 32023388 -116760084 + L3 LINE CR1 1243 1494 -83 21 0 0 0 chr11 32024704 32024725 -116758747 + AT_rich Low_complexity Low_complexity 1 21 0 344 255 49 0 chr11 32025860 32025962 -116757510 - MIR SINE MIR 0 262 156 734 243 56 19 chr11 32026683 32026897 -116756575 - MIR SINE MIR -17 245 24 24 54 0 18 chr11 32027460 32027485 -116755987 + AT_rich Low_complexity Low_complexity 1 25 -30 1613 184 0 46 chr11 32027485 32027790 -116755682 - AluJo SINE Alu -21 291 1 24 54 0 18 chr11 32027790 32027820 -116755652 + AT_rich Low_complexity Low_complexity 25 55 0 186 43 0 0 chr11 32027990 32028013 -116755459 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 24 53 0 0 chr11 32028324 32028362 -116755110 + AT_rich Low_complexity Low_complexity 1 38 0 266 29 0 0 chr11 32028484 32028518 -116754954 - MADE1 DNA Mariner -41 39 6 271 224 149 45 chr11 32028729 32028863 -116754609 + L2 LINE L2 3165 3312 -1 222 265 0 41 chr11 32029176 32029225 -116754247 - L2 LINE L2 -9 3263 3217 2196 68 61 7 chr11 32029540 32029833 -116753639 - AluSc SINE Alu 0 309 1 376 347 28 2 chr11 32029854 32030008 -116753464 - MIR3 SINE MIR -77 131 9 547 318 115 41 chr11 32030564 32031114 -116752358 + L2 LINE L2 2668 3242 -71 312 148 16 0 chr11 32031118 32031179 -116752293 - MSTB1 LTR MaLR -4 428 367 1842 215 27 0 chr11 32031179 32031555 -116751917 + MST-int LTR MaLR 478 863 -788 542 149 45 4 chr11 32031555 32031673 -116751799 + MSTB LTR MaLR 234 426 0 303 270 0 0 chr11 32031675 32031749 -116751723 + L2 LINE L2 3199 3272 0 217 225 0 0 chr11 32031908 32031948 -116751524 + (TAG)n Simple_repeat Simple_repeat 1 40 0 259 313 266 21 chr11 32031948 32032140 -116751332 - MIR SINE MIR 0 262 24 282 56 0 0 chr11 32034043 32034079 -116749393 + (GA)n Simple_repeat Simple_repeat 1 36 0 494 237 157 21 chr11 32035699 32035946 -116747526 - MLT1H LTR MaLR 0 555 249 521 213 67 33 chr11 32036018 32036168 -116747304 - MLT1H LTR MaLR -394 155 1 412 243 111 71 chr11 32036548 32036774 -116746698 + MIR SINE MIR 28 262 0 684 222 113 52 chr11 32036953 32037165 -116746307 + MIR SINE MIR 20 244 -18 339 253 253 6 chr11 32038588 32038758 -116744714 + L2 LINE L2 3100 3311 -2 3715 225 87 7 chr11 32038888 32040224 -116743248 - L1ME1 LINE L1 -26 6140 4702 441 300 76 51 chr11 32040297 32040534 -116742938 - MIR SINE MIR -14 248 6 22 0 0 0 chr11 32041791 32041813 -116741659 + AT_rich Low_complexity Low_complexity 1 22 0 467 194 129 81 chr11 32041971 32042157 -116741315 - HAL1b LINE L1 -443 905 711 321 299 52 58 chr11 32042341 32042515 -116740957 - HAL1 LINE L1 -738 1769 1597 588 275 22 34 chr11 32042688 32042866 -116740606 - MIR SINE MIR -24 238 63 1305 192 45 34 chr11 32045163 32045454 -116738018 - AluJo SINE Alu -18 294 1 1862 157 0 26 chr11 32045841 32046147 -116737325 - AluJb SINE Alu -14 298 1 2299 67 0 63 chr11 32046759 32047075 -116736397 - AluY SINE Alu -15 296 1 2490 59 0 7 chr11 32048042 32048349 -116735123 + AluY SINE Alu 1 305 -6 254 159 91 0 chr11 32049864 32049908 -116733564 + L2 LINE L2 3215 3262 -10 262 312 60 9 chr11 32050913 32051046 -116732426 - MIR SINE MIR -64 198 61 183 100 0 0 chr11 32051727 32051757 -116731715 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1708 154 4 0 chr11 32052668 32052947 -116730525 + AluSx SINE Alu 1 280 -32 345 47 0 0 chr11 32052947 32052990 -116730482 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr11 32052990 32053012 -116730460 + AT_rich Low_complexity Low_complexity 1 22 0 184 309 194 14 chr11 32053064 32053281 -116730191 - MIR SINE MIR -5 257 2 2086 101 3 11 chr11 32053399 32053685 -116729787 - AluSc SINE Alu -22 287 4 283 258 182 67 chr11 32053737 32053946 -116729526 + MIR SINE MIR 13 245 -17 21 0 0 0 chr11 32056377 32056398 -116727074 + AT_rich Low_complexity Low_complexity 1 21 0 312 140 0 0 chr11 32061671 32061721 -116721751 + L1MB1 LINE L1 6102 6151 -17 971 203 123 5 chr11 32064199 32064411 -116719061 - MIR SINE MIR -15 247 11 810 301 62 39 chr11 32064579 32065084 -116718388 + MLT1K LTR MaLR 2 588 0 1858 205 58 52 chr11 32065099 32065601 -116717871 + MLT1D LTR MaLR 1 505 0 580 292 34 42 chr11 32066565 32066801 -116716671 - MIR SINE MIR -21 241 8 205 351 0 0 chr11 32066858 32066915 -116716557 + MER91 DNA MER1_type 2 58 -82 272 322 38 71 chr11 32067071 32067254 -116716218 + MIR3 SINE MIR 5 181 -27 282 294 0 15 chr11 32068661 32068729 -116714743 + MIR SINE MIR 16 82 -180 230 267 17 0 chr11 32068837 32068897 -116714575 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 192 158 0 0 chr11 32069110 32069148 -116714324 + (CTCG)n Simple_repeat Simple_repeat 2 39 0 1803 147 42 114 chr11 32071033 32071113 -116712359 - L1MB4 LINE L1 -1 6179 6095 361 65 0 0 chr11 32071113 32071159 -116712313 + MADE1 DNA Mariner 1 46 -34 1803 147 42 114 chr11 32071159 32071482 -116711990 - L1MB4 LINE L1 -85 6095 5763 236 344 54 0 chr11 32071488 32071581 -116711891 - L2 LINE L2 -21 3251 3154 240 282 0 42 chr11 32071633 32071704 -116711768 - L2 LINE L2 0 3272 3205 199 189 0 0 chr11 32072618 32072655 -116710817 + L2 LINE L2 3187 3223 -49 237 253 152 67 chr11 32072679 32072948 -116710524 + L1ME4a LINE L1 5812 6103 -18 218 222 14 111 chr11 32073232 32073304 -116710168 - L2 LINE L2 0 3313 3249 841 153 8 0 chr11 32073471 32073595 -116709877 + FRAM SINE Alu 1 125 -51 644 242 101 22 chr11 32073694 32073921 -116709551 + MIR SINE MIR 17 261 -1 355 328 38 30 chr11 32074130 32074261 -116709211 + MIR3 SINE MIR 15 146 -62 212 175 53 35 chr11 32074674 32074731 -116708741 - L2 LINE L2 -10 3262 3205 279 318 163 31 chr11 32075029 32075158 -116708314 + L2 LINE L2 3122 3267 -5 1284 197 65 16 chr11 32075308 32075617 -116707855 + MER33 DNA MER1_type 1 324 0 483 256 62 62 chr11 32075617 32075922 -116707550 + L1ME4a LINE L1 5590 5894 -227 858 254 41 12 chr11 32076379 32076623 -116706849 + MIR SINE MIR 12 262 0 213 70 47 47 chr11 32076780 32076823 -116706649 + T-rich Low_complexity Low_complexity 4 46 0 2022 137 20 0 chr11 32076971 32077263 -116706209 + AluSx SINE Alu 1 298 -14 472 257 59 26 chr11 32078259 32078411 -116705061 - MER103 DNA DNA -1 165 9 467 263 171 0 chr11 32078453 32078605 -116704867 - MIR SINE MIR -1 261 84 2481 160 131 7 chr11 32078875 32079324 -116704148 - MLT1D LTR MaLR 0 505 1 303 293 47 0 chr11 32079712 32079818 -116703654 + MIR SINE MIR 140 250 -12 297 288 98 82 chr11 32079874 32080058 -116703414 - MIR SINE MIR -48 214 28 263 267 0 17 chr11 32080883 32080943 -116702529 - MIR SINE MIR -184 78 20 185 313 174 9 chr11 32080989 32081104 -116702368 + MIR SINE MIR 2 135 -127 216 0 0 0 chr11 32081129 32081153 -116702319 + (T)n Simple_repeat Simple_repeat 1 24 0 298 231 183 10 chr11 32081246 32081350 -116702122 + L2 LINE L2 3191 3312 -1 487 218 286 0 chr11 32081380 32081527 -116701945 - MER5A DNA MER1_type 0 189 1 382 243 312 5 chr11 32081534 32081723 -116701749 + MIR SINE MIR 16 262 0 861 251 65 9 chr11 32082979 32083194 -116700278 + MIR SINE MIR 15 241 -21 213 248 64 16 chr11 32083199 32083305 -116700167 - L2 LINE L2 -1 3312 3133 206 321 84 63 chr11 32083382 32083572 -116699900 - MIR SINE MIR -49 213 20 217 384 50 10 chr11 32083650 32083749 -116699723 + MIR SINE MIR 30 132 -76 239 356 130 27 chr11 32083913 32084059 -116699413 + L2 LINE L2 3103 3263 -9 353 197 0 0 chr11 32084916 32084977 -116698495 + MIR SINE MIR 70 130 -132 1042 212 17 68 chr11 32085057 32085126 -116698346 + MER58A DNA MER1_type 1 72 -2348 2377 87 0 0 chr11 32085126 32085424 -116698048 + AluSx SINE Alu 1 298 -14 1042 212 17 68 chr11 32085424 32085590 -116697882 + MER58A DNA MER1_type 72 224 0 307 314 43 29 chr11 32085653 32085793 -116697679 - MIR3 SINE MIR -65 143 2 446 178 109 0 chr11 32086009 32086110 -116697362 + MER103 DNA DNA 8 119 -47 24 32 0 0 chr11 32086268 32086299 -116697173 + AT_rich Low_complexity Low_complexity 1 31 0 433 328 96 35 chr11 32086897 32087095 -116696377 + L2 LINE L2 3053 3262 -10 1341 188 83 14 chr11 32087806 32088082 -116695390 + AluJo SINE Alu 1 295 -17 25 0 0 0 chr11 32088254 32088279 -116695193 + AT_rich Low_complexity Low_complexity 1 25 0 378 301 146 36 chr11 32088307 32088526 -116694946 - MIR SINE MIR 0 262 20 21 0 0 0 chr11 32089527 32089548 -116693924 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 32089719 32089740 -116693732 + AT_rich Low_complexity Low_complexity 1 21 0 327 300 200 7 chr11 32090306 32090456 -116693016 - MIR3 SINE MIR -15 193 15 221 286 62 54 chr11 32090464 32090521 -116692951 + MIR SINE MIR 31 86 -122 2987 136 36 0 chr11 32090521 32091022 -116692450 - L1MB3 LINE L1 0 6183 5665 221 286 62 54 chr11 32091022 32091076 -116692396 + MIR SINE MIR 86 143 -65 210 278 111 0 chr11 32092861 32092951 -116690521 - L2 LINE L2 -5 3267 3168 200 313 33 27 chr11 32093416 32093566 -116689906 - MER5A DNA MER1_type -4 185 35 553 252 67 96 chr11 32093718 32093761 -116689711 + L2 LINE L2 3036 3079 -234 2012 66 89 0 chr11 32093761 32094032 -116689440 - AluSp SINE Alu -18 295 1 553 252 67 96 chr11 32094032 32094258 -116689214 + L2 LINE L2 3079 3297 -16 189 0 0 0 chr11 32094262 32094283 -116689189 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 962 223 28 114 chr11 32094354 32094443 -116689029 + MER34 LTR ERV1 1 96 -446 1585 171 44 24 chr11 32094443 32094736 -116688736 + AluJb SINE Alu 1 299 -13 962 223 28 114 chr11 32094736 32095216 -116688256 + MER34 LTR ERV1 96 521 -21 332 258 54 0 chr11 32095276 32095369 -116688103 - L2 LINE L2 -15 3298 3201 416 339 31 26 chr11 32095481 32095673 -116687799 - MIR SINE MIR -51 211 19 342 291 50 50 chr11 32095838 32096020 -116687452 - MIR SINE MIR -51 211 30 530 243 0 74 chr11 32096110 32096299 -116687173 + MIR3 SINE MIR 22 196 -12 216 226 226 0 chr11 32096935 32096997 -116686475 + MIR SINE MIR 36 111 -97 237 323 108 32 chr11 32097172 32097358 -116686114 + L2 LINE L2 2702 2901 -413 311 282 24 0 chr11 32097591 32097676 -116685796 + MER5A DNA MER1_type 35 121 -68 25 0 0 0 chr11 32099553 32099578 -116683894 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 32100566 32100587 -116682885 + AT_rich Low_complexity Low_complexity 1 21 0 310 273 65 43 chr11 32101245 32101384 -116682088 + L3 LINE CR1 1177 1318 -259 279 54 0 0 chr11 32101619 32101656 -116681816 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 289 121 0 chr11 32101660 32101743 -116681729 + L3 LINE CR1 1483 1575 -2 365 311 33 22 chr11 32102670 32102820 -116680652 - MIR SINE MIR -43 165 20 212 279 0 81 chr11 32103170 32103256 -116680216 + MIR3 SINE MIR 107 185 -23 368 302 94 13 chr11 32103732 32103891 -116679581 - MER5A DNA MER1_type 0 189 18 2556 0 0 7 chr11 32103993 32104273 -116679199 - AluYa5 SINE Alu -1 310 33 1764 152 7 17 chr11 32105416 32105712 -116677760 + AluJo SINE Alu 1 293 -19 40 21 0 0 chr11 32105715 32105762 -116677710 + AT_rich Low_complexity Low_complexity 1 47 0 3634 146 27 6 chr11 32105845 32106481 -116676991 + L1MB3 LINE L1 5534 6182 -1 22 35 0 0 chr11 32107612 32107641 -116675831 + AT_rich Low_complexity Low_complexity 1 29 0 270 305 40 49 chr11 32108504 32108904 -116674568 + MLT1K LTR MaLR 149 586 -2 22 0 0 0 chr11 32108923 32108945 -116674527 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr11 32109347 32109383 -116674089 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr11 32109819 32109853 -116673619 + AT_rich Low_complexity Low_complexity 1 34 0 298 325 204 6 chr11 32110025 32110182 -116673290 + MIR SINE MIR 57 244 -18 1728 176 0 26 chr11 32110360 32110673 -116672799 - AluJb SINE Alu -7 305 1 886 153 15 2 chr11 32110795 32110997 -116672475 - MER8 DNA MER2_type 0 239 1 204 348 62 0 chr11 32111074 32111186 -116672286 + L2 LINE L2 3106 3224 -89 443 211 8 23 chr11 32113123 32113256 -116670216 + MER113 DNA MER1_type? 1 131 -390 270 0 0 0 chr11 32113305 32113335 -116670137 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr11 32113334 32113359 -116670113 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 249 321 27 9 chr11 32113585 32113697 -116669775 + GA-rich Low_complexity Low_complexity 6 119 0 498 268 12 61 chr11 32114407 32114571 -116668901 - MIR SINE MIR 0 262 107 197 207 61 49 chr11 32114713 32114795 -116668677 + MIR SINE MIR 179 261 -1 274 159 0 0 chr11 32114795 32114839 -116668633 + (CAT)n Simple_repeat Simple_repeat 1 44 0 814 211 19 93 chr11 32115429 32115699 -116667773 + L1MB8 LINE L1 5920 6169 -9 185 264 0 19 chr11 32116261 32116314 -116667158 - L3 LINE CR1 -676 901 850 * 254 333 121 11 chr11 32116291 32116564 -116666908 + L2 LINE L2 2594 2896 -418 424 311 54 76 chr11 32116572 32116849 -116666623 + L2 LINE L2 3001 3271 -1 1387 233 11 0 chr11 32117157 32117458 -116666014 + AluJo SINE Alu 1 304 0 2281 145 75 0 chr11 32117578 32117992 -116665480 + L1MB3 LINE L1 5737 6181 -2 486 245 31 13 chr11 32117997 32118156 -116665316 - MER112 DNA MER1_type -98 162 1 288 292 11 0 chr11 32118156 32118245 -116665227 - L1ME LINE L1 -289 5832 5743 1623 238 42 65 chr11 32118604 32119201 -116664271 + MLT1E LTR MaLR 11 593 0 754 300 56 25 chr11 32119447 32119952 -116663520 + MLT1K LTR MaLR 4 586 -2 3924 241 67 32 chr11 32120354 32122872 -116660600 - L1ME1 LINE L1 -4 6096 3488 793 282 112 39 chr11 32122890 32123347 -116660125 - L1ME1 LINE L1 -5575 495 6 234 315 27 18 chr11 32125919 32126030 -116657442 - MIR SINE MIR -40 222 111 265 253 77 44 chr11 32127159 32127341 -116656131 - L1ME4a LINE L1 -1 6120 5933 27 0 0 0 chr11 32128444 32128471 -116655001 + AT_rich Low_complexity Low_complexity 1 27 0 526 303 108 26 chr11 32130195 32130426 -116653046 + MIR SINE MIR 13 262 0 187 177 63 114 chr11 32130414 32130493 -116652979 - MIR SINE MIR -100 162 88 * 369 252 70 26 chr11 32132076 32132191 -116651281 - L2 LINE L2 0 3272 3153 1699 160 25 0 chr11 32132570 32132845 -116650627 - AluJb SINE Alu -30 282 1 293 212 77 49 chr11 32133108 32133223 -116650249 + MIR SINE MIR 42 153 -92 205 229 0 71 chr11 32133273 32133343 -116650129 + MIR SINE MIR 147 211 -51 231 204 0 0 chr11 32134087 32134136 -116649336 + T-rich Low_complexity Low_complexity 1 49 0 255 312 35 29 chr11 32136421 32136523 -116646949 - MIR SINE MIR -95 113 22 622 255 75 0 chr11 32136582 32136770 -116646702 - MIR SINE MIR 0 262 61 813 273 32 19 chr11 32137871 32138087 -116645385 + MIR SINE MIR 30 248 -14 2121 31 47 0 chr11 32138204 32138462 -116645010 + AluY SINE Alu 34 303 -8 377 286 9 27 chr11 32138703 32138815 -116644657 - MIR3 SINE MIR -45 163 54 396 345 18 12 chr11 32138873 32139038 -116644434 - MIR SINE MIR -66 196 31 394 339 44 28 chr11 32139093 32139273 -116644199 + MER5A DNA MER1_type 6 188 -1 1312 164 47 106 chr11 32139451 32139525 -116643947 - MER2 DNA MER2_type 0 345 268 2358 112 0 0 chr11 32139525 32139837 -116643635 + AluSx SINE Alu 1 312 0 1312 164 47 106 chr11 32139837 32140122 -116643350 - MER2 DNA MER2_type -77 268 7 228 67 0 0 chr11 32142766 32142796 -116640676 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1725 121 143 0 chr11 32143374 32143639 -116639833 + AluSq SINE Alu 1 303 -10 226 267 33 0 chr11 32143664 32143724 -116639748 - MER113 DNA MER1_type? -6 515 454 192 258 97 65 chr11 32143987 32144080 -116639392 + L2 LINE L2 3193 3288 -25 1344 173 17 0 chr11 32144337 32144568 -116638904 - MER46A DNA MER2_type -1 235 1 465 257 143 11 chr11 32145584 32145759 -116637713 + MIR SINE MIR 65 262 0 231 382 20 0 chr11 32145810 32145912 -116637560 + L2 LINE L2 3168 3271 -1 259 356 34 7 chr11 32146092 32146238 -116637234 + MIR SINE MIR 109 258 -4 323 238 105 19 chr11 32147180 32147285 -116636187 - MIR SINE MIR -65 143 30 2745 97 11 3 chr11 32148080 32148452 -116635020 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr11 32149245 32149276 -116634196 + AT_rich Low_complexity Low_complexity 1 31 0 283 247 108 21 chr11 32149553 32149646 -116633826 + L2 LINE L2 3197 3297 -16 240 308 11 33 chr11 32150858 32150949 -116632523 + MIR3 SINE MIR 9 97 -111 2024 119 0 20 chr11 32151093 32151415 -116632057 - AluSx SINE Alu 0 316 1 262 59 0 0 chr11 32153521 32153555 -116629917 + MLT1B LTR MaLR 3 36 -354 497 136 11 0 chr11 32153571 32153659 -116629813 + MLT1B LTR MaLR 301 389 -1 189 364 40 20 chr11 32153942 32154041 -116629431 + L2 LINE L2 3137 3237 -35 249 159 0 0 chr11 32154322 32154366 -116629106 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 304 313 147 18 chr11 32154829 32154992 -116628480 - MIR3 SINE MIR -15 193 10 21 0 0 0 chr11 32155780 32155801 -116627671 + AT_rich Low_complexity Low_complexity 1 21 0 506 306 64 30 chr11 32156296 32156561 -116626911 - L2 LINE L2 -9 3304 3031 1885 143 7 36 chr11 32157790 32158098 -116625374 + AluSx SINE Alu 1 299 -13 236 310 0 0 chr11 32158826 32158897 -116624575 + A-rich Low_complexity Low_complexity 2 72 0 451 267 81 62 chr11 32159103 32159361 -116624111 + MLT1L LTR MaLR 5 267 -348 365 245 119 26 chr11 32159507 32159658 -116623814 + MLT1L LTR MaLR 446 610 -5 356 291 53 46 chr11 32159839 32159891 -116623581 - MIR SINE MIR -6 256 206 1801 170 24 0 chr11 32159891 32160185 -116623287 + AluSx SINE Alu 1 301 -11 356 291 53 46 chr11 32160185 32160283 -116623189 - MIR SINE MIR -56 206 105 311 354 0 10 chr11 32160415 32160549 -116622923 - MER5A DNA MER1_type -38 151 8 574 259 47 26 chr11 32161081 32161274 -116622198 - MER117 DNA MER1_type 0 197 1 1617 192 45 3 chr11 32164070 32164362 -116619110 + AluJb SINE Alu 1 304 -8 210 246 0 0 chr11 32164404 32164465 -116619007 + (TA)n Simple_repeat Simple_repeat 1 61 0 248 234 0 0 chr11 32164514 32164561 -116618911 + (TAG)n Simple_repeat Simple_repeat 1 47 0 271 312 0 0 chr11 32164806 32164883 -116618589 + (CTA)n Simple_repeat Simple_repeat 1 77 0 216 241 17 52 chr11 32165887 32165945 -116617527 + MER91A DNA MER1_type 18 73 -123 223 286 0 0 chr11 32166113 32166162 -116617310 + (TGG)n Simple_repeat Simple_repeat 3 51 0 202 307 86 49 chr11 32166901 32167064 -116616408 + MIR SINE MIR 67 235 -27 1318 197 70 27 chr11 32167197 32167455 -116616017 + L1MC4 LINE L1 7636 7859 -136 339 25 0 0 chr11 32167455 32167495 -116615977 + (CA)n Simple_repeat Simple_repeat 2 41 0 1318 197 70 27 chr11 32167495 32167627 -116615845 + L1MC4 LINE L1 7859 7984 -11 1301 71 0 0 chr11 32168693 32168848 -116614624 - AluSp SINE Alu -7 306 152 188 143 18 125 chr11 32168912 32168968 -116614504 - L2 LINE L2 -264 3049 3000 2320 102 3 10 chr11 32169040 32169353 -116614119 + AluSq SINE Alu 1 311 -2 180 240 31 83 chr11 32169397 32169493 -116613979 - L2 LINE L2 -444 2870 2780 400 203 130 16 chr11 32169577 32169700 -116613772 + MIR SINE MIR 126 262 0 329 300 10 10 chr11 32170135 32170235 -116613237 + MIR SINE MIR 57 156 -106 588 118 0 0 chr11 32171704 32171789 -116611683 + AluSg/x SINE Alu 209 293 -16 2351 44 0 83 chr11 32171962 32172301 -116611171 - AluY SINE Alu 0 311 1 23 0 0 0 chr11 32172438 32172461 -116611011 + AT_rich Low_complexity Low_complexity 1 23 0 256 267 23 12 chr11 32172560 32172646 -116610826 + GA-rich Low_complexity Low_complexity 1 87 0 199 213 21 117 chr11 32173022 32173116 -116610356 - MIR SINE MIR -66 196 112 234 277 14 28 chr11 32173244 32173332 -116610140 + L1ME4a LINE L1 5979 6066 -55 2084 132 3 7 chr11 32173332 32173628 -116609844 - AluSx SINE Alu -17 295 1 234 277 14 28 chr11 32173628 32173680 -116609792 + L1ME4a LINE L1 6066 6117 -4 706 190 7 36 chr11 32173691 32173828 -116609644 - FLAM_A SINE Alu 0 133 1 295 250 0 0 chr11 32173847 32173911 -116609561 + MARNA DNA Mariner 341 404 -182 411 308 51 34 chr11 32173912 32174204 -116609268 + L1ME4a LINE L1 5533 5829 -292 333 275 190 20 chr11 32174442 32174595 -116608877 + L1ME4a LINE L1 5776 5902 -219 189 0 0 0 chr11 32174595 32174616 -116608856 + (TG)n Simple_repeat Simple_repeat 2 22 0 333 275 190 20 chr11 32174616 32174757 -116608715 + L1ME4a LINE L1 5902 6120 -1 215 300 14 0 chr11 32175405 32175475 -116607997 - L2 LINE L2 0 3272 3202 206 375 0 16 chr11 32175631 32175759 -116607713 - L2 LINE L2 -299 2973 2848 347 286 25 75 chr11 32177095 32177256 -116606216 + MIR SINE MIR 104 256 -6 521 313 14 0 chr11 32177276 32177423 -116606049 + MIR3 SINE MIR 47 195 -13 322 264 50 50 chr11 32177601 32177741 -116605731 - MIR SINE MIR -35 227 88 242 284 142 45 chr11 32178185 32178361 -116605111 + MIR SINE MIR 1 193 -69 284 264 45 27 chr11 32179104 32179214 -116604258 - MIR SINE MIR -65 197 86 318 329 112 0 chr11 32179442 32179603 -116603869 + MIR3 SINE MIR 21 199 -9 296 323 44 30 chr11 32179686 32179983 -116603489 + L1ME LINE L1 5525 5825 -296 23 0 0 0 chr11 32181849 32181872 -116601600 + AT_rich Low_complexity Low_complexity 1 23 0 192 179 0 0 chr11 32182726 32182765 -116600707 + GA-rich Low_complexity Low_complexity 2 40 0 321 299 4 135 chr11 32184549 32184684 -116598788 - L3 LINE CR1 -1 1576 1486 1696 190 0 25 chr11 32184684 32185000 -116598472 - AluJo SINE Alu -4 308 1 321 299 4 135 chr11 32185000 32185108 -116598364 - L3 LINE CR1 -91 1486 1365 406 303 138 7 chr11 32185190 32185335 -116598137 + MIR SINE MIR 86 249 -13 900 303 16 4 chr11 32185342 32185593 -116597879 + MIR SINE MIR 2 255 -7 248 282 60 43 chr11 32185645 32185762 -116597710 + MIR SINE MIR 100 218 -44 500 316 21 21 chr11 32185801 32185991 -116597481 - L3 LINE CR1 -226 1351 1162 1837 159 48 0 chr11 32186668 32186963 -116596509 - AluSx SINE Alu -3 309 1 186 286 20 0 chr11 32187155 32187204 -116596268 - L3 LINE CR1 -3 1574 1525 1872 154 6 49 chr11 32187403 32187728 -116595744 + AluJo SINE Alu 1 311 -1 21 0 0 0 chr11 32187959 32187980 -116595492 + AT_rich Low_complexity Low_complexity 1 21 0 435 297 42 18 chr11 32188359 32188524 -116594948 + MIR3 SINE MIR 7 175 -33 231 36 0 0 chr11 32188861 32188889 -116594583 + (T)n Simple_repeat Simple_repeat 1 28 0 348 320 0 0 chr11 32189636 32189736 -116593736 - L2 LINE L2 0 3272 3173 188 360 0 44 chr11 32190047 32190161 -116593311 - L2 LINE L2 -343 2929 2821 324 264 143 7 chr11 32190659 32190799 -116592673 - MIR SINE MIR -35 227 69 1522 106 179 0 chr11 32190945 32191191 -116592281 - AluSq SINE Alu -13 290 1 275 260 52 13 chr11 32192176 32192253 -116591219 - MIR SINE MIR -160 102 23 210 306 16 0 chr11 32192360 32192422 -116591050 - L2 LINE L2 0 3272 3210 836 183 153 7 chr11 32192643 32192917 -116590555 + LTR37A LTR ERV1 87 400 -26 660 300 4 36 chr11 32193101 32193290 -116590182 + MIR SINE MIR 16 196 -66 1782 156 7 27 chr11 32193290 32193591 -116589881 - AluJo SINE Alu -17 295 1 660 300 4 36 chr11 32193591 32193656 -116589816 + MIR SINE MIR 196 262 0 275 337 65 0 chr11 32196155 32196247 -116587225 - MIR SINE MIR -79 129 32 549 251 43 21 chr11 32196253 32196440 -116587032 - MIR SINE MIR 0 262 72 395 277 82 38 chr11 32196788 32196947 -116586525 + MIR SINE MIR 18 183 -79 331 298 41 41 chr11 32197495 32197656 -116585816 - L1ME4a LINE L1 -70 6051 5888 240 35 0 0 chr11 32197656 32197685 -116585787 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 331 298 41 41 chr11 32197685 32197818 -116585654 - L1ME4a LINE L1 -232 5889 5757 1935 142 14 14 chr11 32199570 32199866 -116583606 - AluSx SINE Alu -16 296 1 209 274 219 0 chr11 32200386 32200459 -116583013 - MIR SINE MIR -66 142 54 2568 115 3 3 chr11 32200511 32200875 -116582597 + THE1B LTR MaLR 1 364 0 299 263 0 74 chr11 32201251 32201346 -116582126 - MIR3 SINE MIR -6 202 115 464 257 128 39 chr11 32201677 32201856 -116581616 + MIR SINE MIR 68 262 0 193 234 64 0 chr11 32202217 32202264 -116581208 + L2 LINE L2 3223 3272 0 26 0 0 0 chr11 32202281 32202307 -116581165 + AT_rich Low_complexity Low_complexity 1 26 0 241 341 11 0 chr11 32203085 32203173 -116580299 - MARNA DNA Mariner -373 213 125 186 133 0 0 chr11 32203189 32203219 -116580253 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr11 32203220 32203256 -116580216 + AT_rich Low_complexity Low_complexity 1 36 0 1670 200 3 19 chr11 32203441 32203793 -116579679 - AluJb SINE Alu 0 347 1 41 36 0 0 chr11 32204738 32204793 -116578679 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr11 32205373 32205398 -116578074 + AT_rich Low_complexity Low_complexity 1 25 0 220 229 16 16 chr11 32207777 32207838 -116575634 + MIR SINE MIR 82 142 -66 26 0 0 0 chr11 32207923 32207949 -116575523 + AT_rich Low_complexity Low_complexity 1 26 0 328 268 143 9 chr11 32208059 32208171 -116575301 - L2 LINE L2 0 3313 3187 1556 141 23 4 chr11 32208266 32208528 -116574944 - MER1B DNA MER1_type 0 339 73 623 304 4 83 chr11 32209434 32209700 -116573772 - MIR SINE MIR -10 252 8 180 0 0 0 chr11 32211718 32211738 -116571734 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 420 246 0 97 chr11 32211738 32211872 -116571600 - L2 LINE L2 -13 3300 3180 280 293 75 60 chr11 32213158 32213291 -116570181 - MIR SINE MIR 0 262 128 1583 176 85 12 chr11 32215149 32215489 -116567983 - MLT1A1 LTR MaLR 0 365 1 255 354 95 7 chr11 32217972 32218119 -116565353 - MIR3 SINE MIR -9 199 40 6769 112 29 46 chr11 32218181 32218744 -116564728 + Tigger3b DNA MER2_type 1 572 -2456 970 124 7 7 chr11 32218744 32218897 -116564575 - L1PB3 LINE L1 -1 6153 6001 6769 112 29 46 chr11 32218897 32219578 -116563894 + Tigger3b DNA MER2_type 572 1224 -7 439 279 131 33 chr11 32220448 32220631 -116562841 - MIR SINE MIR -61 201 1 620 251 68 52 chr11 32221126 32221377 -116562095 - MIR SINE MIR -1 261 7 184 304 145 0 chr11 32222098 32222167 -116561305 + L2 LINE L2 3158 3236 -36 336 244 210 8 chr11 32222190 32222309 -116561163 - MIR3 SINE MIR -9 199 57 216 182 0 23 chr11 32223044 32223070 -116560402 + (CAGA)n Simple_repeat Simple_repeat 2 28 -16 192 77 0 0 chr11 32223070 32223096 -116560376 + (TAGG)n Simple_repeat Simple_repeat 2 27 0 216 182 0 23 chr11 32223096 32223113 -116560359 + (CAGA)n Simple_repeat Simple_repeat 28 44 0 186 288 121 0 chr11 32225001 32225067 -116558405 + MIR SINE MIR 76 149 -113 312 27 0 0 chr11 32228199 32228236 -116555236 + (T)n Simple_repeat Simple_repeat 1 37 0 344 22 22 0 chr11 32229412 32229457 -116554015 + (CA)n Simple_repeat Simple_repeat 2 47 0 40 0 0 0 chr11 32230444 32230484 -116552988 + GC_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr11 32231208 32231245 -116552227 + GC_rich Low_complexity Low_complexity 1 37 0 233 185 15 15 chr11 32231352 32231417 -116552055 + (CGAG)n Simple_repeat Simple_repeat 2 66 0 231 140 0 0 chr11 32231996 32232046 -116551426 + (CA)n Simple_repeat Simple_repeat 2 51 0 1927 161 30 19 chr11 32235469 32235897 -116547575 - LTR56 LTR ERV1 -3 442 10 245 286 56 92 chr11 32236293 32236489 -116546983 - L2 LINE L2 0 3272 3084 436 288 33 118 chr11 32236577 32237028 -116546444 - L2 LINE L2 -408 2906 2494 424 182 61 47 chr11 32238037 32238185 -116545287 - L1ME4a LINE L1 0 6121 5972 848 258 22 0 chr11 32238236 32238414 -116545058 + MIR SINE MIR 51 232 -30 243 0 0 0 chr11 32241615 32241642 -116541830 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr11 32241808 32241843 -116541629 + AT_rich Low_complexity Low_complexity 1 35 0 965 270 68 83 chr11 32242580 32243184 -116540288 + MLT1G1 LTR MaLR 1 595 0 28 0 0 0 chr11 32243914 32243942 -116539530 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr11 32244588 32244636 -116538836 + AT_rich Low_complexity Low_complexity 1 48 0 888 153 134 64 chr11 32244768 32244881 -116538591 - MER20 DNA MER1_type 0 219 115 3285 145 12 20 chr11 32244881 32245481 -116537991 - L1MB3 LINE L1 0 6183 5589 888 153 134 64 chr11 32245481 32245569 -116537903 - MER20 DNA MER1_type -104 115 4 334 300 22 11 chr11 32245989 32246079 -116537393 + MIR SINE MIR 23 113 -149 627 203 81 46 chr11 32246081 32246246 -116537226 + MER3 DNA MER1_type 5 180 -29 2482 134 5 3 chr11 32246246 32246620 -116536852 + THE1C LTR MaLR 1 375 0 627 203 81 46 chr11 32246620 32246651 -116536821 + MER3 DNA MER1_type 180 208 -1 483 313 8 0 chr11 32246661 32246795 -116536677 + MIR SINE MIR 120 254 -8 181 200 156 0 chr11 32246804 32246849 -116536623 + MIR SINE MIR 75 126 -82 353 324 71 8 chr11 32247323 32247479 -116535993 - MIR SINE MIR -62 146 4 469 336 99 9 chr11 32247697 32247929 -116535543 - MIR SINE MIR -4 258 6 434 179 13 0 chr11 32249264 32249342 -116534130 + MER116 DNA Mariner 2 80 0 359 191 56 32 chr11 32249961 32250087 -116533385 - L1MC4 LINE L1 0 8042 7914 299 337 27 43 chr11 32250529 32250713 -116532759 + L2 LINE L2 2591 2771 -543 2140 131 0 0 chr11 32251077 32251374 -116532098 + AluSx SINE Alu 1 297 -15 672 310 179 8 chr11 32251376 32251998 -116531474 + L2 LINE L2 2531 3272 -41 23 0 0 0 chr11 32252215 32252238 -116531234 + AT_rich Low_complexity Low_complexity 1 23 0 616 276 61 79 chr11 32252384 32252714 -116530758 + MER102a DNA MER1_type 1 324 -6 243 0 0 0 chr11 32252750 32252777 -116530695 + (T)n Simple_repeat Simple_repeat 1 27 0 261 276 0 0 chr11 32252917 32252975 -116530497 - MER69 DNA AcHobo -1 2525 2468 21 23 0 47 chr11 32253015 32253031 -116530441 + AT_rich Low_complexity Low_complexity 1 16 -25 2181 98 0 49 chr11 32253031 32253356 -116530116 + AluSg SINE Alu 1 309 -1 21 23 0 47 chr11 32253356 32253382 -116530090 + AT_rich Low_complexity Low_complexity 16 41 0 432 277 0 0 chr11 32253382 32253476 -116529996 - MER69 DNA AcHobo -1130 96 3 1123 223 143 53 chr11 32253716 32254129 -116529343 + LTR33A LTR ERVL 66 515 -8 458 203 23 30 chr11 32254535 32254668 -116528804 - L1MC5 LINE L1 -48 7913 7782 273 57 0 0 chr11 32254722 32254745 -116528727 + (TG)n Simple_repeat Simple_repeat 1 58 0 273 57 0 0 chr11 32254745 32254780 -116528692 + (TG)n Simple_repeat Simple_repeat 2 36 0 663 210 0 0 chr11 32254796 32254915 -116528557 - FRAM SINE Alu -30 146 28 4574 231 84 73 chr11 32254931 32255808 -116527664 - L1ME2 LINE L1 -32 6066 5200 1427 162 3 110 chr11 32255808 32256135 -116527337 - AluJb SINE Alu -6 296 5 4574 231 84 73 chr11 32256135 32257341 -116526131 - L1ME2 LINE L1 -898 5200 4009 864 199 6 6 chr11 32257341 32257507 -116525965 - FRAM SINE Alu 0 166 1 4574 231 84 73 chr11 32257507 32258762 -116524710 - L1ME2 LINE L1 -2089 4009 2686 22 35 0 0 chr11 32258762 32258791 -116524681 + AT_rich Low_complexity Low_complexity 1 29 0 5259 179 22 26 chr11 32258791 32259050 -116524422 - L1MA10 LINE L1 -29 6305 6047 1914 127 0 23 chr11 32259050 32259350 -116524122 - AluSg SINE Alu -17 293 1 5259 179 22 26 chr11 32259350 32260541 -116522931 - L1MA10 LINE L1 -287 6047 4853 255 250 68 11 chr11 32260552 32260640 -116522832 - L1ME2 LINE L1 -5478 592 500 237 325 113 53 chr11 32260866 32261017 -116522455 - L2 LINE L2 -5 3308 3149 1410 199 39 23 chr11 32261101 32261407 -116522065 - AluJo SINE Alu -1 311 1 197 362 0 29 chr11 32261522 32261591 -116521881 - L2 LINE L2 -1 3312 3246 248 374 30 8 chr11 32261707 32261838 -116521634 - MIR SINE MIR -109 153 20 568 293 42 59 chr11 32263218 32263505 -116519967 + MLT1J LTR MaLR 230 511 0 184 304 118 39 chr11 32263513 32263615 -116519857 - L2 LINE L2 -12 3260 3151 530 291 98 47 chr11 32263925 32264376 -116519096 - L1MEd LINE L1 -4862 1257 784 1289 174 32 124 chr11 32264967 32265369 -116518103 + MLT1A1 LTR MaLR 1 365 0 485 352 99 46 chr11 32265437 32265580 -116517892 + L2 LINE L2 2526 2660 -612 1005 155 4 105 chr11 32265580 32265819 -116517653 - MER20 DNA MER1_type -4 215 1 485 352 99 46 chr11 32265819 32266116 -116517356 + L2 LINE L2 2660 2987 -285 22 80 0 0 chr11 32266630 32266680 -116516792 + AT_rich Low_complexity Low_complexity 1 50 0 1463 164 6 74 chr11 32267669 32267980 -116515492 - L1MC1 LINE L1 -6 6327 6038 255 305 12 0 chr11 32267983 32268065 -116515407 - L1MC2 LINE L1 -277 6067 5985 * 3130 167 96 26 chr11 32268051 32268894 -116514578 - L1MCa LINE L1 -3915 2692 1761 950 75 0 8 chr11 32268894 32269027 -116514445 - Alu SINE Alu -12 298 167 1061 25 0 0 chr11 32269028 32269149 -116514323 + AluY SINE Alu 11 131 -180 3017 142 42 13 chr11 32269177 32269566 -116513906 - L1MCa LINE L1 -4819 1607 1192 193 0 61 30 chr11 32269566 32269599 -116513873 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3017 142 42 13 chr11 32269599 32269831 -116513641 - L1MCa LINE L1 -5234 1192 968 2509 196 163 33 chr11 32269834 32270472 -116513000 - L1MCa LINE L1 -5686 740 20 199 258 79 79 chr11 32273235 32273324 -116510148 + MER5B DNA MER1_type 66 154 -24 * 360 261 54 18 chr11 32273245 32273356 -116510116 - MER5A DNA MER1_type -73 116 2 197 339 49 105 chr11 32273858 32274183 -116509289 - L2 LINE L2 -115 3157 2851 415 270 103 59 chr11 32274543 32274583 -116508889 + MLT1L LTR MaLR 219 256 -359 1695 210 96 25 chr11 32274583 32275054 -116508418 - MLT1D LTR MaLR -1 504 1 415 270 103 59 chr11 32275054 32275354 -116508118 + MLT1L LTR MaLR 256 574 -41 1471 113 122 60 chr11 32275376 32275695 -116507777 + MER44D DNA MER2_type 1 609 0 389 275 92 0 chr11 32275815 32275935 -116507537 - MIR3 SINE MIR -41 167 37 387 303 13 23 chr11 32278941 32279074 -116504398 - MIR SINE MIR -57 151 32 210 71 0 0 chr11 32282517 32282545 -116500927 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 210 171 0 0 chr11 32282685 32282720 -116500752 + A-rich Low_complexity Low_complexity 1 35 0 221 219 27 55 chr11 32284366 32284439 -116499033 + MIR SINE MIR 18 88 -120 680 213 44 16 chr11 32284498 32284681 -116498791 - MER53 DNA DNA -1 188 1 3708 105 20 2 chr11 32285025 32285569 -116497903 + MER41A LTR ERV1 1 554 0 4107 142 30 57 chr11 32285569 32286367 -116497105 + MER41A-int LTR ERV1 1 690 -5256 2590 151 55 66 chr11 32286368 32287012 -116496460 + MER41A-int LTR ERV1 650 1300 -4646 2231 111 7 0 chr11 32287012 32287319 -116496153 + AluSx SINE Alu 1 309 -3 2590 151 55 66 chr11 32287319 32287674 -116495798 + MER41A-int LTR ERV1 1300 2962 -2984 * 6523 128 13 31 chr11 32287668 32288970 -116494502 + MER41A-int LTR ERV1 2807 4086 -929 5638 105 9 7 chr11 32289003 32289867 -116493605 + MER41A-int LTR ERV1 5057 5922 -24 605 144 21 0 chr11 32289867 32289964 -116493508 + AluSg/x SINE Alu 205 303 -9 2953 86 14 2 chr11 32289991 32290420 -116493052 + MER41A LTR ERV1 1 434 -120 2095 82 10 56 chr11 32290424 32290727 -116492745 - AluSq SINE Alu -24 289 1 180 0 0 0 chr11 32292231 32292251 -116491221 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1149 185 21 24 chr11 32292873 32293160 -116490312 - L1ME2 LINE L1 -213 5951 5666 3474 158 52 15 chr11 32293320 32294037 -116489435 - L1MB4 LINE L1 -13 6167 5425 278 267 91 12 chr11 32294040 32294205 -116489267 - L1ME LINE L1 -419 5702 5525 2296 109 0 7 chr11 32294435 32294737 -116488735 - AluSx SINE Alu -12 300 1 2097 158 14 3 chr11 32294828 32295189 -116488283 + MLT1A1 LTR MaLR 1 365 0 321 234 133 70 chr11 32295250 32295455 -116488017 - MIR SINE MIR -30 232 19 24 32 0 0 chr11 32295905 32295936 -116487536 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 32296101 32296123 -116487349 + AT_rich Low_complexity Low_complexity 1 22 0 444 326 11 129 chr11 32296267 32296617 -116486855 - L2 LINE L2 -49 3223 2915 1644 168 3 39 chr11 32296644 32296954 -116486518 + AluJb SINE Alu 1 299 -13 316 102 29 9 chr11 32296954 32297066 -116486406 + GA-rich Low_complexity Low_complexity 1 114 0 1322 22 5 32 chr11 32297069 32297254 -116486218 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 180 0 0 0 chr11 32297256 32297276 -116486196 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 342 354 52 21 chr11 32297309 32297411 -116486061 - L2 LINE L2 -463 2851 2754 2459 76 0 0 chr11 32297411 32297715 -116485757 + AluY SINE Alu 1 304 -7 342 354 52 21 chr11 32297715 32297937 -116485535 - L2 LINE L2 -560 2754 2517 1123 200 23 0 chr11 32298023 32298238 -116485234 + MER58A DNA MER1_type 1 220 -4 291 93 0 0 chr11 32298255 32298298 -116485174 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 459 92 0 0 chr11 32298297 32298362 -116485110 + (TA)n Simple_repeat Simple_repeat 2 66 0 2165 147 72 3 chr11 32298379 32298768 -116484704 - MSTA LTR MaLR -9 419 4 2043 140 41 0 chr11 32298819 32299161 -116484311 + Tigger2 DNA MER2_type 2361 2716 -2 324 0 0 0 chr11 32299161 32299197 -116484275 + (TG)n Simple_repeat Simple_repeat 1 36 0 256 318 118 12 chr11 32299212 32299457 -116484015 - L2 LINE L2 -944 2370 2100 1774 212 49 24 chr11 32299512 32299965 -116483507 - MLT1C LTR MaLR -3 464 1 23 0 0 0 chr11 32300969 32300992 -116482480 + AT_rich Low_complexity Low_complexity 1 23 0 301 269 26 0 chr11 32301009 32301087 -116482385 + L1MC3 LINE L1 6572 6651 -1134 700 309 87 28 chr11 32301930 32302399 -116481073 - L1M4 LINE L1 -745 5401 4905 676 257 43 43 chr11 32302508 32302784 -116480688 - L1M4 LINE L1 -1933 4213 3938 371 299 14 0 chr11 32302919 32303065 -116480407 - MLT1J2 LTR MaLR -232 214 63 2161 249 108 21 chr11 32303177 32303883 -116479589 - MER21B LTR ERV1 -54 809 43 358 239 0 0 chr11 32303886 32303957 -116479515 - MER21B LTR ERV1 -774 89 19 2219 121 7 0 chr11 32304049 32304355 -116479117 + AluSx SINE Alu 4 311 -1 441 54 0 0 chr11 32304450 32304506 -116478966 + (TA)n Simple_repeat Simple_repeat 2 57 0 249 83 0 0 chr11 32304555 32304591 -116478881 + (GA)n Simple_repeat Simple_repeat 1 36 0 1572 197 14 25 chr11 32304592 32304876 -116478596 - AluJo SINE Alu -31 281 1 725 201 51 26 chr11 32304913 32305147 -116478325 + L1MD3 LINE L1 7680 7995 0 291 279 115 77 chr11 32305302 32305485 -116477987 + MIR SINE MIR 67 256 -6 180 0 0 0 chr11 32305488 32305508 -116477964 + (CAT)n Simple_repeat Simple_repeat 2 21 0 593 287 14 91 chr11 32305962 32306237 -116477235 + LTR33 LTR ERVL 242 495 -26 652 340 78 13 chr11 32306505 32306737 -116476735 - MIR SINE MIR -3 259 13 1593 260 55 34 chr11 32306795 32307302 -116476170 - LTR33 LTR ERVL -1 520 3 314 243 96 52 chr11 32308339 32308475 -116474997 + MER20B DNA MER1_type 29 170 -613 612 265 133 33 chr11 32309274 32309485 -116473987 + MIR SINE MIR 29 260 -2 2707 90 8 13 chr11 32309589 32309966 -116473506 - THE1C LTR MaLR 0 375 1 360 73 18 0 chr11 32310228 32310283 -116473189 - MADE1 DNA Mariner 0 80 25 251 270 0 0 chr11 32310294 32310357 -116473115 + MLT1J LTR MaLR 111 173 -338 377 285 165 15 chr11 32310805 32311072 -116472400 + MLT1I LTR MaLR 25 331 -78 213 225 0 0 chr11 32311124 32311164 -116472308 + GA-rich Low_complexity Low_complexity 3 42 0 1000 280 55 41 chr11 32311825 32312612 -116470860 - L2 LINE L2 0 3313 2485 501 251 246 0 chr11 32312648 32312835 -116470637 + MIR SINE MIR 28 260 -2 392 0 21 0 chr11 32313264 32313312 -116470160 + (CA)n Simple_repeat Simple_repeat 2 50 0 696 298 36 4 chr11 32313549 32313797 -116469675 - MIR SINE MIR -2 260 5 1149 199 55 16 chr11 32314340 32314652 -116468820 + MER33 DNA MER1_type 1 324 0 411 256 67 18 chr11 32315288 32315452 -116468020 + LTR16C LTR ERVL 305 476 -15 210 253 145 0 chr11 32315499 32315582 -116467890 + MIR SINE MIR 120 214 -48 1366 222 34 58 chr11 32316506 32316921 -116466551 + MLT1D LTR MaLR 1 405 -100 209 231 103 77 chr11 32317676 32317754 -116465718 - L2 LINE L2 -7 3265 3186 258 291 154 9 chr11 32317992 32318130 -116465342 - MIR SINE MIR -78 130 32 23034 53 2 1 chr11 32318676 32321674 -116461798 + L1PA4 LINE L1 1 3001 -3145 1554 40 0 0 chr11 32321672 32321871 -116461601 + L1P LINE L1 4551 4749 -1397 * 19434 35 0 1 chr11 32321871 32325019 -116458453 + L1PA4 LINE L1 3006 6153 -2 375 333 0 0 chr11 32325183 32325285 -116458187 + MIR SINE MIR 38 139 -69 918 222 43 30 chr11 32325328 32325558 -116457914 - MIR SINE MIR -15 247 15 646 311 31 15 chr11 32325568 32325828 -116457644 - MLT1L LTR MaLR -2 613 350 181 248 83 64 chr11 32326352 32326461 -116457011 + L2 LINE L2 2890 3000 -272 4249 172 13 9 chr11 32326585 32327351 -116456121 + Tigger7 DNA MER2_type 2 770 -1717 2028 123 57 3 chr11 32327351 32327702 -116455770 + Tigger7 DNA MER2_type 2118 2487 0 2757 83 8 0 chr11 32327950 32328310 -116455162 + THE1B LTR MaLR 2 364 0 229 328 0 0 chr11 32328967 32329031 -116454441 + MIR3 SINE MIR 138 201 -7 600 191 124 62 chr11 32329692 32329933 -116453539 + ORSL DNA AcHobo 1 256 -19 258 265 108 35 chr11 32330229 32330401 -116453071 - MIR SINE MIR 0 262 29 363 335 91 15 chr11 32331198 32331395 -116452077 + MIR SINE MIR 49 260 -2 2282 240 50 24 chr11 32331751 32332492 -116450980 - MER20B DNA MER1_type -22 761 2 23 86 0 0 chr11 32332775 32332833 -116450639 + AT_rich Low_complexity Low_complexity 1 58 0 11665 202 160 55 chr11 32332834 32334376 -116449096 + L1P3 LINE L1 687 2067 -4394 730 171 0 0 chr11 32334376 32334493 -116448979 - AluSg/x SINE Alu -14 298 182 11665 202 160 55 chr11 32334493 32335460 -116448012 + L1P3 LINE L1 2067 2932 -3529 1551 112 0 0 chr11 32335460 32335665 -116447807 + AluSq SINE Alu 1 205 -108 11665 202 160 55 chr11 32335665 32337028 -116446444 + L1P3 LINE L1 2932 5067 -1394 562 259 29 7 chr11 32337281 32337420 -116446052 + MIR SINE MIR 50 191 -71 588 257 118 37 chr11 32337467 32337942 -116445530 - MLT1K LTR MaLR -34 554 7 266 231 46 0 chr11 32338142 32338207 -116445265 + L2 LINE L2 3205 3272 0 515 281 58 29 chr11 32338321 32338381 -116445091 - MER5A DNA MER1_type -4 185 128 2134 117 38 0 chr11 32338381 32338672 -116444800 + AluSx SINE Alu 1 302 -10 515 281 58 29 chr11 32338672 32338782 -116444690 - MER5A DNA MER1_type -61 128 10 1970 130 67 9 chr11 32338786 32339131 -116444341 - MLT1A1 LTR MaLR 0 365 1 6048 97 22 15 chr11 32339646 32340710 -116442762 + L1PA11 LINE L1 5104 6173 -1 23 0 0 0 chr11 32341886 32341909 -116441563 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr11 32342762 32342826 -116440646 + AT_rich Low_complexity Low_complexity 1 64 0 279 284 164 0 chr11 32343029 32343145 -116440327 + L2 LINE L2 3138 3272 0 330 277 0 12 chr11 32343167 32343250 -116440222 + MIR3 SINE MIR 110 191 -17 273 261 151 42 chr11 32343268 32343387 -116440085 + MER5A DNA MER1_type 55 186 -3 2676 209 55 151 chr11 32344612 32345318 -116438154 + L1MC4a LINE L1 5851 6275 -1533 2068 124 33 15 chr11 32345318 32345649 -116437823 - MER1B DNA MER1_type 0 337 1 2676 209 55 151 chr11 32345649 32346589 -116436883 + L1MC4a LINE L1 6275 7304 -504 515 159 9 18 chr11 32346593 32346706 -116436766 + L1MA9 LINE L1 5922 6033 -279 207 162 0 0 chr11 32346708 32346745 -116436727 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 3379 149 61 38 chr11 32346748 32347465 -116436007 - L1MA9 LINE L1 -36 6276 5543 1407 221 48 61 chr11 32347458 32347779 -116435693 + L1MD3 LINE L1 7536 7851 -144 * 2605 94 8 24 chr11 32347779 32348160 -116435312 - THE1C LTR MaLR 0 375 1 1407 221 48 61 chr11 32348160 32348294 -116435178 + L1MD3 LINE L1 7851 7985 -10 276 77 0 0 chr11 32348516 32348555 -116434917 + (CA)n Simple_repeat Simple_repeat 2 40 0 484 307 31 47 chr11 32348656 32348965 -116434507 - MLT1I LTR MaLR -77 332 59 443 288 125 53 chr11 32349035 32349299 -116434173 + L2 LINE L2 3030 3312 -1 227 231 19 0 chr11 32349351 32349403 -116434069 + L2 LINE L2 3220 3272 0 22 0 0 0 chr11 32350182 32350204 -116433268 + AT_rich Low_complexity Low_complexity 1 22 0 685 231 0 0 chr11 32351092 32351213 -116432259 - MER58A DNA MER1_type 0 121 1 384 280 14 21 chr11 32351235 32351378 -116432094 - L1ME LINE L1 -439 5682 5541 355 287 85 27 chr11 32351683 32352015 -116431457 - MLT1I LTR MaLR -3 447 80 1376 214 31 22 chr11 32352015 32352370 -116431102 - L1MC4a LINE L1 -435 7373 7016 4888 150 13 33 chr11 32352533 32353453 -116430019 + L1MA3 LINE L1 5403 6304 -1 281 179 18 0 chr11 32353508 32353564 -116429908 - Alu SINE Alu -2 299 243 917 136 8 0 chr11 32353564 32353696 -116429776 - AluSq/x SINE Alu -179 133 1 1452 180 27 4 chr11 32353698 32353719 -116429753 - AluJo SINE Alu -8 304 285 195 42 0 0 chr11 32353719 32353743 -116429729 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 * 870 101 20 7 chr11 32353742 32353891 -116429581 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 1452 180 27 4 chr11 32353743 32354125 -116429347 - AluJo SINE Alu -27 285 43 21 82 0 0 chr11 32354425 32354474 -116428998 + AT_rich Low_complexity Low_complexity 1 49 0 374 303 66 13 chr11 32355291 32355442 -116428030 + MIR SINE MIR 34 191 -71 226 213 0 53 chr11 32356080 32356174 -116427298 - L1MC4 LINE L1 -1339 6703 6615 238 286 0 0 chr11 32356384 32356440 -116427032 - MER91B DNA MER1_type -133 57 2 283 312 0 37 chr11 32356462 32356571 -116426901 - L1MC4 LINE L1 -2020 5788 5684 226 238 32 0 chr11 32357470 32357533 -116425939 - LTR48 LTR ERV1 -618 169 105 274 324 7 44 chr11 32357820 32357956 -116425516 - MIR3 SINE MIR -6 202 72 378 315 62 28 chr11 32358161 32358339 -116425133 + MIR SINE MIR 9 192 -70 199 286 27 109 chr11 32358491 32358533 -116424939 + MIR3 SINE MIR 74 118 -90 1640 158 40 20 chr11 32358533 32358831 -116424641 + AluJb SINE Alu 1 304 -8 199 286 27 109 chr11 32358831 32358935 -116424537 + MIR3 SINE MIR 118 208 0 * 341 220 248 28 chr11 32358926 32359035 -116424437 - MER5A DNA MER1_type 0 178 46 414 340 7 7 chr11 32359047 32359191 -116424281 + MIR SINE MIR 119 262 0 454 295 104 36 chr11 32359303 32359496 -116423976 + MER102a DNA MER1_type 125 330 0 209 238 0 0 chr11 32361272 32361314 -116422158 + T-rich Low_complexity Low_complexity 1 42 0 300 27 0 0 chr11 32362890 32362927 -116420545 + (CA)n Simple_repeat Simple_repeat 2 38 0 29 47 0 0 chr11 32362978 32363021 -116420451 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr11 32363496 32363525 -116419947 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1186 267 110 7 chr11 32365020 32365465 -116418007 + LTR16C LTR ERVL 1 491 0 377 67 17 0 chr11 32365606 32365666 -116417806 - L1PB2 LINE L1 -2 6149 6089 336 262 13 7 chr11 32366134 32366230 -116417242 + MIR SINE MIR 49 142 -66 205 246 82 16 chr11 32366464 32366525 -116416947 + MIR SINE MIR 82 146 -62 1354 234 39 20 chr11 32366608 32366963 -116416509 - L1ME1 LINE L1 -8 6158 5797 1028 246 30 4 chr11 32367197 32367433 -116416039 - MLT1F LTR MaLR -45 497 256 * 1634 227 37 15 chr11 32367421 32367827 -116415645 + MLT1C LTR MaLR 52 466 -1 474 139 0 0 chr11 32367827 32367899 -116415573 - MLT1F LTR MaLR -470 72 1 841 335 90 19 chr11 32367900 32368486 -116414986 - L2 LINE L2 -190 3082 2454 300 355 36 29 chr11 32368898 32369036 -116414436 + L2 LINE L2 3132 3270 -2 455 323 56 41 chr11 32369193 32369388 -116414084 - L2 LINE L2 -2 3311 3114 925 78 7 14 chr11 32369509 32369650 -116413822 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 2222 119 3 6 chr11 32369655 32369967 -116413505 + AluSx SINE Alu 1 311 -1 562 254 95 32 chr11 32370084 32370368 -116413104 - L1ME4a LINE L1 -203 5918 5617 194 329 37 0 chr11 32371043 32371125 -116412347 - MIR3 SINE MIR -9 199 115 213 350 77 8 chr11 32371423 32371540 -116411932 - MIR3 SINE MIR -72 136 12 1474 108 45 18 chr11 32371563 32371786 -116411686 + MER30 DNA MER1_type 2 230 0 229 278 48 0 chr11 32371794 32371871 -116411601 + MIR SINE MIR 71 144 -64 2061 119 19 19 chr11 32372940 32373064 -116410408 + AluSg SINE Alu 1 124 -186 270 0 0 0 chr11 32373064 32373094 -116410378 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2061 119 19 19 chr11 32373094 32373279 -116410193 + AluSg SINE Alu 123 310 0 430 253 45 65 chr11 32373375 32373529 -116409943 + MIR SINE MIR 56 206 -56 206 158 26 0 chr11 32375554 32375592 -116407880 - MIR SINE MIR -13 249 211 207 268 42 14 chr11 32376279 32376350 -116407122 - MIR SINE MIR -108 154 82 1851 136 7 4 chr11 32376898 32377178 -116406294 + AluJb SINE Alu 22 302 -10 343 280 69 0 chr11 32377244 32377345 -116406127 + L1M4c LINE L1 1559 1852 -891 1120 309 102 30 chr11 32378120 32379277 -116404195 + L1M4c LINE L1 2819 4058 -2324 401 220 92 21 chr11 32379321 32379462 -116404010 - MLT1L LTR MaLR -26 589 439 378 212 0 35 chr11 32379699 32379784 -116403688 - MLT1L LTR MaLR -530 85 4 464 309 85 8 chr11 32379784 32380020 -116403452 + L1M4c LINE L1 4073 4326 -2056 229 200 29 14 chr11 32380047 32380117 -116403355 + (TA)n Simple_repeat Simple_repeat 2 72 0 376 194 0 0 chr11 32381219 32381281 -116402191 - MER45 DNA AcHobo 0 1581 1520 316 200 0 0 chr11 32381291 32381341 -116402131 - MER45 DNA AcHobo -903 50 1 456 276 21 14 chr11 32381590 32381735 -116401737 - MIR SINE MIR -5 257 112 1297 240 64 25 chr11 32381986 32382378 -116401094 + MLT1I LTR MaLR 1 407 -2 896 252 65 9 chr11 32382526 32382756 -116400716 - MIR SINE MIR 0 262 20 1942 13 35 0 chr11 32382759 32382990 -116400482 - L1PA2 LINE L1 0 6155 5917 2482 11 11 0 chr11 32382990 32383277 -116400195 + L1PA2 LINE L1 5624 5913 -242 741 250 60 63 chr11 32383611 32383911 -116399561 + MLT1K LTR MaLR 275 573 -15 826 285 42 0 chr11 32384653 32384867 -116398605 - MER58A DNA MER1_type 0 224 2 281 272 111 38 chr11 32385229 32385482 -116397990 + MIR SINE MIR 20 248 -14 281 342 26 9 chr11 32385503 32385617 -116397855 - MIR SINE MIR -145 117 2 354 313 0 0 chr11 32386122 32386221 -116397251 - MIR3 SINE MIR -18 190 92 879 119 21 62 chr11 32386303 32386496 -116396976 + MER53 DNA DNA 1 185 -4 192 125 0 0 chr11 32386588 32386620 -116396852 + (A)n Simple_repeat Simple_repeat 1 32 0 256 236 11 56 chr11 32386919 32387008 -116396464 - HAL1 LINE L1 -6 2501 2417 838 133 41 77 chr11 32387036 32387232 -116396240 + MER53 DNA DNA 1 189 0 362 301 0 26 chr11 32387316 32387429 -116396043 + MER81 DNA DNA 2 111 -3 465 329 26 0 chr11 32388923 32389075 -116394397 - MIR3 SINE MIR -37 171 16 365 365 18 6 chr11 32389558 32389725 -116393747 - L3 LINE CR1 -68 1509 1341 308 312 83 0 chr11 32389908 32390017 -116393455 + LTR33A LTR ERVL 71 188 -335 381 257 59 0 chr11 32390092 32390193 -116393279 + LTR33 LTR ERVL 415 521 0 280 331 38 87 chr11 32390193 32390562 -116392910 - L3 LINE CR1 -363 1214 864 246 81 0 0 chr11 32391783 32391820 -116391652 + (CA)n Simple_repeat Simple_repeat 2 38 0 1388 206 42 83 chr11 32392547 32393003 -116390469 + MLT2C2 LTR ERVL 1 437 -27 461 308 79 40 chr11 32393059 32393286 -116390186 - MIR SINE MIR -1 261 26 514 323 95 4 chr11 32393403 32393635 -116389837 - MIR SINE MIR -6 256 4 346 286 9 9 chr11 32396737 32396842 -116386630 + MLT1I LTR MaLR 99 203 -206 2098 182 28 9 chr11 32396954 32397393 -116386079 - LTR45B LTR ERV1 -43 446 1 421 232 26 80 chr11 32397715 32397866 -116385606 - MIR3 SINE MIR -63 145 3 518 287 112 26 chr11 32398471 32398895 -116384577 + L2 LINE L2 2684 3168 -145 348 83 0 0 chr11 32398895 32398943 -116384529 + (TG)n Simple_repeat Simple_repeat 2 49 0 518 287 112 26 chr11 32398943 32399103 -116384369 + L2 LINE L2 3168 3313 0 1158 243 68 66 chr11 32399481 32399999 -116383473 - LTR33 LTR ERVL 0 521 3 942 271 29 16 chr11 32400007 32400251 -116383221 - MIR SINE MIR -13 249 3 366 277 114 31 chr11 32400823 32401155 -116382317 - L1ME4a LINE L1 -46 6075 5695 293 274 17 42 chr11 32402263 32402386 -116381086 - MIR SINE MIR -84 124 4 267 244 78 9 chr11 32402788 32402903 -116380569 + LTR67 LTR ERVL 420 542 -15 270 214 0 0 chr11 32403146 32403202 -116380270 - MIR3 SINE MIR -14 194 139 22 0 0 0 chr11 32403461 32403483 -116379989 + AT_rich Low_complexity Low_complexity 1 22 0 740 265 109 0 chr11 32404167 32404378 -116379094 + MIR SINE MIR 28 261 -1 206 238 12 119 chr11 32405396 32405480 -116377992 + MIR3 SINE MIR 109 183 -25 327 330 73 52 chr11 32405652 32405982 -116377490 - L1MEc LINE L1 -4185 2211 1875 384 322 121 0 chr11 32405995 32406284 -116377188 - L1MEc LINE L1 -4576 1820 1497 445 256 33 33 chr11 32406551 32406766 -116376706 - L1MEc LINE L1 -5007 1198 984 1056 256 94 46 chr11 32407737 32408256 -116375216 + MLT1G LTR MaLR 1 574 -16 243 286 174 10 chr11 32408694 32408792 -116374680 - L3 LINE CR1 -4 1573 1460 968 290 106 64 chr11 32409117 32409648 -116373824 - L3 LINE CR1 -393 1184 632 605 230 132 0 chr11 32409902 32410054 -116373418 - MER5B DNA MER1_type -6 172 1 285 286 93 21 chr11 32410074 32410215 -116373257 + MIR SINE MIR 13 162 -61 212 376 128 0 chr11 32411055 32411172 -116372300 - L2 LINE L2 -2 3270 3139 609 196 78 11 chr11 32411193 32411372 -116372100 + L1MD3 LINE L1 7796 7986 -9 2372 70 0 0 chr11 32411373 32411693 -116371779 + AluY SINE Alu 1 320 0 1983 187 55 59 chr11 32411867 32412260 -116371212 - MLT1D LTR MaLR 0 505 113 2302 103 3 22 chr11 32412260 32412579 -116370893 + AluSp SINE Alu 1 313 0 1983 187 55 59 chr11 32412579 32412692 -116370780 - MLT1D LTR MaLR -392 113 1 1188 232 82 12 chr11 32412818 32413159 -116370313 - MLT1B LTR MaLR -25 365 1 190 351 81 40 chr11 32413198 32413372 -116370100 - L2 LINE L2 -536 2778 2598 2324 105 3 6 chr11 32413388 32413701 -116369771 + AluSx SINE Alu 1 312 0 334 274 85 52 chr11 32413767 32413920 -116369552 + L1MEd LINE L1 48 205 -5914 482 236 118 15 chr11 32414260 32414455 -116369017 + HAL1 LINE L1 1151 1365 -1142 463 219 26 0 chr11 32414601 32414715 -116368757 + HAL1 LINE L1 2243 2359 -148 1070 310 126 44 chr11 32414755 32415669 -116367803 + L2 LINE L2 440 1428 -1886 499 198 0 45 chr11 32415678 32415789 -116367683 + MIR SINE MIR 52 157 -105 964 187 61 98 chr11 32415945 32416271 -116367201 + MER2 DNA MER2_type 31 344 -1 595 313 97 37 chr11 32416272 32416592 -116366880 + L2 LINE L2 1477 1821 -1493 1377 208 20 41 chr11 32416592 32416886 -116366586 - AluJo SINE Alu -24 288 1 595 313 97 37 chr11 32416886 32416916 -116366556 + L2 LINE L2 1821 1848 -1466 602 192 8 8 chr11 32417018 32417148 -116366324 - MLT1A2 LTR MaLR 0 374 245 837 244 74 0 chr11 32417148 32417365 -116366107 + MIR SINE MIR 30 262 0 248 293 140 47 chr11 32417361 32417511 -116365961 + L2 LINE L2 3149 3312 -1 * 197 224 165 12 chr11 32417550 32417635 -116365837 - L2 LINE L2 -1329 1985 1888 257 241 52 0 chr11 32417681 32417739 -116365733 - MIR SINE MIR -76 186 126 215 30 0 30 chr11 32421062 32421095 -116362377 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1961 105 91 0 chr11 32421215 32421500 -116361972 - AluY SINE Alu 0 311 1 409 333 98 11 chr11 32421570 32421834 -116361638 - L1 LINE L1 -3090 3056 2770 2337 91 3 0 chr11 32422446 32422744 -116360728 + AluSx SINE Alu 2 300 -12 21 0 0 0 chr11 32423396 32423417 -116360055 + AT_rich Low_complexity Low_complexity 1 21 0 962 216 58 149 chr11 32424527 32425211 -116358261 - L1ME3A LINE L1 -15 6155 5562 2184 103 0 0 chr11 32425211 32425520 -116357952 - AluSg SINE Alu 0 309 1 962 216 58 149 chr11 32425520 32425685 -116357787 - L1ME3A LINE L1 -608 5562 5383 391 221 168 38 chr11 32425767 32425923 -116357549 - MIR SINE MIR -43 165 16 188 307 40 59 chr11 32425915 32426016 -116357456 - L2 LINE L2 -603 2711 2613 * 571 236 124 12 chr11 32426260 32426502 -116356970 - L1ME4a LINE L1 -79 6042 5774 312 245 20 31 chr11 32426504 32426602 -116356870 - L1ME4a LINE L1 -392 5729 5633 533 234 0 19 chr11 32427544 32427678 -116355794 + MER5A DNA MER1_type 4 134 -55 307 200 0 0 chr11 32427712 32427767 -116355705 + MER5A DNA MER1_type 1 55 -134 1271 151 30 17 chr11 32427768 32428000 -116355472 + AluJo SINE Alu 66 300 -12 611 236 16 8 chr11 32428000 32428123 -116355349 + MER5A DNA MER1_type 66 189 0 925 190 20 25 chr11 32428155 32428355 -116355117 - MER58A DNA MER1_type -24 200 2 592 247 28 67 chr11 32428368 32428546 -116354926 + MER5B DNA MER1_type 5 175 -3 202 220 119 0 chr11 32429725 32429784 -116353688 - MIR3 SINE MIR -52 156 91 1414 88 51 225 chr11 32430003 32430376 -116353096 + AluSx SINE Alu 1 308 -4 358 253 0 24 chr11 32430383 32430466 -116353006 - MER5A DNA MER1_type -60 129 49 495 287 45 49 chr11 32431830 32432053 -116351419 + L1ME4a LINE L1 5255 5476 -2332 56 0 0 0 chr11 32432060 32432116 -116351356 + AT_rich Low_complexity Low_complexity 1 56 0 298 256 97 88 chr11 32432128 32432415 -116351057 + L1ME4a LINE L1 5497 5791 -330 3883 208 52 19 chr11 32432415 32433250 -116350222 - MER21B LTR ERV1 -1 862 1 298 256 97 88 chr11 32433250 32433396 -116350076 + L1ME4a LINE L1 5791 5934 -187 1611 187 58 32 chr11 32433404 32433703 -116349769 - MLT1B LTR MaLR 0 390 77 2321 158 10 2 chr11 32433703 32434103 -116349369 + MER57A LTR ERV1 1 403 0 1611 187 58 32 chr11 32434103 32434183 -116349289 - MLT1B LTR MaLR -313 77 1 1589 194 43 7 chr11 32434212 32434691 -116348781 + AluSq SINE Alu 1 490 0 251 175 18 0 chr11 32434706 32434763 -116348709 + GA-rich Low_complexity Low_complexity 4 61 0 257 355 28 0 chr11 32435026 32435133 -116348339 + MIR SINE MIR 97 206 -56 216 0 0 0 chr11 32435167 32435191 -116348281 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1093 74 0 0 chr11 32435191 32435319 -116348153 - AluYb8 SINE Alu -187 131 1 2369 66 3 7 chr11 32435328 32435630 -116347842 - AluY SINE Alu -10 301 1 2219 94 0 10 chr11 32435653 32435952 -116347520 - AluSg SINE Alu -14 296 1 300 299 47 0 chr11 32436389 32436496 -116346976 + MLT1K LTR MaLR 135 246 -342 494 287 0 0 chr11 32436575 32436697 -116346775 + MER94 DNA DNA 13 134 0 247 306 102 6 chr11 32436741 32436898 -116346574 + MLT1K LTR MaLR 363 534 -54 2526 137 44 0 chr11 32437436 32437846 -116345626 - MSTA LTR MaLR 0 428 1 3105 194 62 67 chr11 32438186 32439258 -116344214 - L1MC4 LINE L1 0 8042 6976 414 283 49 54 chr11 32440118 32440302 -116343170 + MIR3 SINE MIR 19 201 -7 257 402 57 33 chr11 32440778 32441233 -116342239 + L2 LINE L2 2047 2512 -802 373 224 0 0 chr11 32441360 32441445 -116342027 + MIR SINE MIR 169 253 -9 275 275 55 83 chr11 32441606 32441824 -116341648 - MLT1J2 LTR MaLR -205 245 34 2262 58 0 7 chr11 32442108 32442385 -116341087 - AluSg SINE Alu -35 275 1 25 0 0 0 chr11 32442385 32442410 -116341062 + AT_rich Low_complexity Low_complexity 1 25 0 207 146 0 0 chr11 32442562 32442603 -116340869 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 238 9 9 chr11 32442690 32442795 -116340677 + CT-rich Low_complexity Low_complexity 4 108 0 2037 117 0 31 chr11 32444140 32444482 -116338990 - AluSg SINE Alu 0 335 3 341 230 128 128 chr11 32444584 32444771 -116338701 - MIR SINE MIR -22 240 54 963 199 5 5 chr11 32444775 32444971 -116338501 + MER6B DNA MER2_type 12 207 -3 630 259 109 23 chr11 32445404 32445624 -116337848 + L2 LINE L2 3075 3313 0 402 259 29 65 chr11 32445806 32445945 -116337527 - MIR SINE MIR -109 153 20 294 280 11 0 chr11 32447005 32447098 -116336374 + L1ME4a LINE L1 5959 6052 -69 1828 249 63 28 chr11 32447456 32448059 -116335413 + MLT1E3 LTR MaLR 1 624 0 343 267 23 61 chr11 32448260 32448391 -116335081 - MIR SINE MIR 0 262 137 432 206 0 22 chr11 32448452 32448544 -116334928 + MER21B LTR ERV1 1 90 -773 2924 234 74 8 chr11 32448566 32449335 -116334137 + MER21B LTR ERV1 19 838 -25 1260 162 26 0 chr11 32449993 32450258 -116333214 - MER33 DNA MER1_type 0 324 53 6997 65 5 3 chr11 32450287 32452111 -116331361 - L1PA8 LINE L1 -10 6162 4339 404 188 47 0 chr11 32452243 32452328 -116331144 + MER106B DNA MER1_type 896 984 -75 301 136 0 17 chr11 32452330 32452389 -116331083 - MLT2D LTR ERVL -2 518 461 256 171 13 40 chr11 32452476 32452552 -116330920 - MER106B DNA MER1_type -81 978 905 594 198 21 37 chr11 32452655 32452813 -116330659 + MER33 DNA MER1_type 1 147 -101 1022 224 34 81 chr11 32452831 32453214 -116330258 - MLT2D LTR ERVL -49 365 1 727 153 127 21 chr11 32453418 32453607 -116329865 - MER3 DNA MER1_type 0 209 1 837 283 5 14 chr11 32453623 32453842 -116329630 + MIR SINE MIR 46 262 0 433 256 62 80 chr11 32455382 32455558 -116327914 + MIR3 SINE MIR 36 208 0 583 58 35 0 chr11 32457481 32457568 -116325904 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 930 164 7 7 chr11 32457952 32458098 -116325374 + FRAM SINE Alu 1 146 -30 543 107 0 0 chr11 32458099 32458183 -116325289 + (TC)n Simple_repeat Simple_repeat 2 85 0 21 36 0 0 chr11 32458183 32458211 -116325261 + AT_rich Low_complexity Low_complexity 1 28 0 2301 90 0 0 chr11 32458325 32458613 -116324859 - AluY SINE Alu -21 290 3 276 149 0 0 chr11 32459700 32459747 -116323725 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 189 352 42 0 chr11 32460975 32461046 -116322426 + MIR SINE MIR 23 96 -166 210 220 34 17 chr11 32461140 32461199 -116322273 + CT-rich Low_complexity Low_complexity 5 64 0 244 260 82 0 chr11 32461640 32461713 -116321759 - MIR SINE MIR -94 114 36 287 307 0 0 chr11 32462348 32462423 -116321049 + L2 LINE L2 3188 3262 -10 744 12 0 0 chr11 32462743 32462828 -116320644 + (GGAAA)n Simple_repeat Simple_repeat 1 85 0 267 157 0 0 chr11 32462828 32462879 -116320593 + GA-rich Low_complexity Low_complexity 2 52 0 311 43 0 22 chr11 32462888 32462934 -116320538 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 258 224 13 79 chr11 32463136 32463212 -116320260 - MIR SINE MIR -109 153 83 880 322 0 4 chr11 32463853 32464089 -116319383 - MIR SINE MIR -23 239 5 207 390 149 4 chr11 32464532 32464760 -116318712 + L3 LINE CR1 1263 1523 -54 255 186 0 0 chr11 32464812 32464855 -116318617 + L2 LINE L2 2602 2644 -670 339 136 0 0 chr11 32464883 32464942 -116318530 + (CA)n Simple_repeat Simple_repeat 1 59 0 255 333 0 0 chr11 32465584 32465653 -116317819 + L2 LINE L2 3202 3270 -2 21 36 0 0 chr11 32465721 32465749 -116317723 + AT_rich Low_complexity Low_complexity 1 28 0 1820 211 66 23 chr11 32466619 32467131 -116316341 + MLT1F LTR MaLR 1 534 -8 488 248 41 8 chr11 32467460 32467581 -116315891 - MIR SINE MIR -37 225 101 787 226 68 9 chr11 32467581 32467802 -116315670 - MLT1K LTR MaLR -120 468 235 407 292 23 41 chr11 32467846 32468017 -116315455 - MLT1K LTR MaLR -419 169 2 376 272 11 0 chr11 32468180 32468272 -116315200 - MER63C DNA MER1_type 0 931 839 555 134 0 12 chr11 32468294 32468376 -116315096 + AluJ/FLAM SINE Alu 21 101 -211 1865 187 112 24 chr11 32468380 32468882 -116314590 - MER63C DNA MER1_type -374 556 11 369 298 32 8 chr11 32468926 32469050 -116314422 - L2 LINE L2 -527 2787 2661 205 341 12 12 chr11 32469118 32469203 -116314269 - MIR SINE MIR -29 233 149 2428 269 61 30 chr11 32471945 32473111 -116310361 + L2 LINE L2 2122 3313 0 304 268 54 83 chr11 32473628 32473796 -116309676 + MER117 DNA MER1_type 1 163 -34 232 383 22 26 chr11 32473993 32474262 -116309210 - L2 LINE L2 -436 2878 2611 371 308 107 13 chr11 32474676 32474910 -116308562 - MER102a DNA MER1_type -1 329 74 459 242 137 20 chr11 32475140 32475293 -116308179 - MIR SINE MIR -3 259 89 446 217 69 3 chr11 32475913 32476102 -116307370 - MIR SINE MIR -4 258 2 395 37 0 19 chr11 32477016 32477070 -116306402 + (TC)n Simple_repeat Simple_repeat 2 54 0 408 247 63 84 chr11 32478570 32478809 -116304663 + MER106A DNA MER1_type 1 234 -2 326 240 0 19 chr11 32478825 32478929 -116304543 - L1ME LINE L1 -344 5801 5700 6240 200 23 24 chr11 32478940 32481908 -116301564 + L1MC1 LINE L1 3366 6329 -4 484 283 119 21 chr11 32481905 32482326 -116301146 - L1ME LINE L1 -443 5702 5241 * 419 263 111 31 chr11 32482378 32482534 -116300938 - L1ME LINE L1 -2912 3217 3075 1639 94 0 5 chr11 32482534 32482757 -116300715 - AluY SINE Alu -9 302 81 419 263 111 31 chr11 32482757 32483435 -116300037 - L1ME LINE L1 -3054 3075 2286 722 243 61 12 chr11 32483441 32483688 -116299784 - LTR33A LTR ERVL -1 522 264 779 139 22 7 chr11 32483856 32483993 -116299479 - L1MC4 LINE L1 -1061 6981 6843 714 89 0 10 chr11 32484123 32484224 -116299248 - AluY SINE Alu -7 304 205 300 248 19 9 chr11 32484228 32484333 -116299139 - L1ME LINE L1 -3872 2257 2152 362 291 46 62 chr11 32484335 32484584 -116298888 - L1MEc LINE L1 -3980 2159 1944 230 230 27 0 chr11 32484648 32484722 -116298750 + CT-rich Low_complexity Low_complexity 1 76 0 716 211 67 5 chr11 32485254 32485448 -116298024 + L1MC4 LINE L1 6853 7058 -984 1845 182 0 0 chr11 32485459 32485788 -116297684 - MER47A DNA MER2_type 0 366 38 1575 229 165 21 chr11 32485822 32486403 -116297069 + L1MC4 LINE L1 7238 7902 -140 21 36 0 0 chr11 32486441 32486469 -116297003 + AT_rich Low_complexity Low_complexity 1 28 0 359 293 34 13 chr11 32486771 32487010 -116296462 - L1MEc LINE L1 -4727 1583 1340 454 209 37 70 chr11 32487035 32487222 -116296250 - L1MEc LINE L1 -4885 1234 1054 655 328 34 32 chr11 32487240 32487676 -116295796 - L1MEc LINE L1 -5260 859 423 2397 154 42 2 chr11 32487849 32488259 -116295213 - MSTB LTR MaLR 0 426 1 9238 172 17 11 chr11 32488259 32489900 -116293572 - MSTB-int LTR MaLR 0 1651 1 2287 145 27 63 chr11 32489900 32490342 -116293130 - MSTB LTR MaLR 0 426 1 2179 141 14 3 chr11 32490900 32491269 -116292203 + MER34B LTR ERV1 1 373 -192 1203 181 37 15 chr11 32491335 32491644 -116291828 + LTR10B LTR ERV1 215 547 0 1022 144 16 5 chr11 32491644 32491838 -116291634 + MER34B LTR ERV1 369 564 -1 255 320 78 19 chr11 32491927 32492030 -116291442 + MIR SINE MIR 19 127 -81 243 292 183 8 chr11 32492414 32492534 -116290938 + MIR SINE MIR 120 260 -2 460 318 167 5 chr11 32493822 32494020 -116289452 - MIR SINE MIR -18 244 15 241 207 52 0 chr11 32494269 32494327 -116289145 + L2 LINE L2 2685 2745 -569 237 305 6 166 chr11 32494676 32495007 -116288465 + L2 LINE L2 2995 3272 0 3879 127 28 16 chr11 32495395 32496040 -116287432 - MER39B LTR ERV1 0 653 1 787 271 62 4 chr11 32496599 32496843 -116286629 - MIR SINE MIR 0 262 5 448 284 13 124 chr11 32497383 32497608 -116285864 - L2 LINE L2 -39 3233 3034 570 164 17 0 chr11 32497800 32497916 -116285556 - MER31A LTR ERV1 0 485 368 910 121 42 77 chr11 32497927 32498133 -116285339 - LTR48 LTR ERV1 0 787 437 1332 199 130 19 chr11 32498133 32498564 -116284908 - LTR48 LTR ERV1 -303 484 6 1218 180 31 96 chr11 32498570 32498828 -116284644 - MER31B LTR ERV1 -107 359 133 2419 70 0 3 chr11 32498828 32499129 -116284343 - AluY SINE Alu -11 300 1 1218 180 31 96 chr11 32499129 32499254 -116284218 - MER31B LTR ERV1 -333 133 1 1017 223 59 13 chr11 32499370 32499699 -116283773 + MSTD LTR MaLR 1 396 0 316 330 10 10 chr11 32500558 32500661 -116282811 - L2 LINE L2 -9 3304 3202 854 152 0 0 chr11 32500884 32501016 -116282456 - FLAM_C SINE Alu -1 132 1 791 274 47 8 chr11 32501752 32501986 -116281486 + MIR SINE MIR 3 245 -17 200 122 0 24 chr11 32502000 32502041 -116281431 + (TTA)n Simple_repeat Simple_repeat 2 41 0 751 323 101 30 chr11 32502073 32502540 -116280932 + L3 LINE CR1 1074 1573 -4 331 277 79 20 chr11 32502657 32502758 -116280714 - MER91A DNA MER1_type -1 195 89 312 309 195 41 chr11 32502758 32502881 -116280591 - MER91A DNA MER1_type -23 173 32 231 97 0 0 chr11 32503550 32503581 -116279891 + LTR67 LTR ERVL 519 549 -8 737 254 108 26 chr11 32503751 32503983 -116279489 - MIR SINE MIR -11 251 1 180 0 0 0 chr11 32506399 32506419 -116277053 + (A)n Simple_repeat Simple_repeat 1 20 0 245 255 0 0 chr11 32506558 32506609 -116276863 + L2 LINE L2 3263 3313 0 386 230 169 27 chr11 32506660 32506808 -116276664 + MIR SINE MIR 65 233 -29 1443 150 16 0 chr11 32506889 32507142 -116276330 + MER34C LTR ERV1 329 585 0 195 337 0 51 chr11 32507192 32507290 -116276182 - MIR SINE MIR -50 212 120 334 270 0 0 chr11 32507347 32507421 -116276051 - L2 LINE L2 -8 3305 3232 2250 109 0 0 chr11 32508363 32508657 -116274815 + AluSx SINE Alu 1 294 -18 219 231 46 15 chr11 32509185 32509250 -116274222 - L2 LINE L2 -74 3239 3173 29 0 0 0 chr11 32509469 32509498 -116273974 + AT_rich Low_complexity Low_complexity 1 29 0 272 265 0 15 chr11 32509877 32509945 -116273527 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 2588 151 15 24 chr11 32510447 32510730 -116272742 + MLT1C LTR MaLR 1 280 -187 2071 170 0 37 chr11 32510730 32511107 -116272365 - MLT1A1 LTR MaLR -2 363 1 2588 151 15 24 chr11 32511107 32511279 -116272193 + MLT1C LTR MaLR 280 452 -15 754 206 138 82 chr11 32511279 32511570 -116271902 + MLT1A1 LTR MaLR 1 307 -58 660 296 25 53 chr11 32511777 32512020 -116271452 + MIR SINE MIR 20 255 -7 194 325 266 7 chr11 32512362 32512516 -116270956 - MIR3 SINE MIR 0 208 15 2455 94 0 0 chr11 32512761 32513069 -116270403 - AluSx SINE Alu -4 308 1 485 353 53 56 chr11 32513964 32514566 -116268906 - L2 LINE L2 -3 3269 2584 219 88 0 0 chr11 32516070 32516104 -116267368 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 411 211 0 0 chr11 32516386 32516476 -116266996 + (TA)n Simple_repeat Simple_repeat 2 91 0 1217 177 28 11 chr11 32516805 32517087 -116266385 + MER33 DNA MER1_type 35 321 -3 332 297 57 92 chr11 32517087 32517491 -116265981 + L2 LINE L2 2877 3266 -47 229 154 0 31 chr11 32517509 32517574 -116265898 + (TA)n Simple_repeat Simple_repeat 1 63 0 417 66 0 0 chr11 32517582 32517643 -116265829 + (TC)n Simple_repeat Simple_repeat 2 62 0 294 183 0 0 chr11 32517812 32517883 -116265589 + (TA)n Simple_repeat Simple_repeat 2 72 0 207 0 0 0 chr11 32517883 32517906 -116265566 + (GA)n Simple_repeat Simple_repeat 2 24 0 399 250 73 44 chr11 32518758 32518894 -116264578 + MER5A DNA MER1_type 47 186 -3 1937 161 0 3 chr11 32522690 32522982 -116260490 + AluJb SINE Alu 2 292 -20 185 269 269 8 chr11 32526199 32526318 -116257154 + MIR3 SINE MIR 58 207 -1 682 75 0 0 chr11 32526967 32527060 -116256412 - L1PA6 LINE L1 -6 6148 6056 238 350 98 21 chr11 32527520 32527714 -116255758 - MIR SINE MIR 0 262 54 312 333 10 43 chr11 32528111 32528318 -116255154 + HAL1b LINE L1 391 590 -758 1943 160 10 10 chr11 32528542 32528849 -116254623 - AluJb SINE Alu -5 307 1 311 312 46 93 chr11 32528868 32529526 -116253946 + L1ME4a LINE L1 4080 4706 -1440 23 33 0 0 chr11 32529548 32529578 -116253894 + AT_rich Low_complexity Low_complexity 1 30 0 1014 264 105 19 chr11 32530227 32530769 -116252703 + L1ME4a LINE L1 5507 6095 -26 1456 212 73 28 chr11 32530912 32531266 -116252206 - MLT1A2 LTR MaLR -4 370 1 23 0 0 0 chr11 32531480 32531503 -116251969 + AT_rich Low_complexity Low_complexity 1 23 0 1838 146 25 0 chr11 32532246 32532520 -116250952 + AluSq SINE Alu 1 281 -32 1182 57 23 11 chr11 32532521 32532696 -116250776 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2284 79 4 0 chr11 32532954 32533233 -116250239 + AluSp SINE Alu 1 280 -33 188 83 0 28 chr11 32533235 32533271 -116250201 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1550 178 40 74 chr11 32534355 32534759 -116248713 + MLT1B LTR MaLR 1 390 0 286 230 230 18 chr11 32535541 32535654 -116247818 - L1ME LINE L1 -525 5596 5460 408 123 0 0 chr11 32536945 32537002 -116246470 + Alu SINE Alu 237 293 -19 505 251 97 40 chr11 32537130 32537305 -116246167 - MIR SINE MIR -32 230 46 271 313 73 104 chr11 32539688 32539947 -116243525 - L2 LINE L2 -5 3267 3017 243 307 89 0 chr11 32541253 32541354 -116242118 - MIR SINE MIR -7 255 146 302 184 0 0 chr11 32541400 32541449 -116242023 + L2 LINE L2 3213 3261 -11 2387 67 20 3 chr11 32541825 32542124 -116241348 + AluY SINE Alu 1 304 -7 811 338 76 47 chr11 32542332 32543176 -116240296 - L2 LINE L2 -114 3158 2295 201 108 0 0 chr11 32543633 32543670 -116239802 + (A)n Simple_repeat Simple_repeat 1 37 0 539 289 118 48 chr11 32545764 32545992 -116237480 - MIR SINE MIR -6 256 13 348 260 24 16 chr11 32546562 32546617 -116236855 + (TA)n Simple_repeat Simple_repeat 2 55 -74 1342 220 30 48 chr11 32546617 32546989 -116236483 + MLT1A1 LTR MaLR 1 365 0 348 260 24 16 chr11 32546989 32547060 -116236412 + (TA)n Simple_repeat Simple_repeat 55 129 0 659 288 0 7 chr11 32547145 32547291 -116236181 - MIR SINE MIR -114 148 4 214 358 25 0 chr11 32547381 32547462 -116236010 - L2 LINE L2 -83 3189 3107 234 270 111 32 chr11 32548568 32548694 -116234778 - MIR SINE MIR -50 212 77 21 0 0 0 chr11 32548765 32548786 -116234686 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 32549684 32549705 -116233767 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 32 53 chr11 32549812 32549907 -116233565 + MIR SINE MIR 5 97 -165 581 199 40 189 chr11 32551484 32551838 -116231634 + L1MC4a LINE L1 6734 6994 -967 1014 219 64 101 chr11 32551838 32552404 -116231068 + MLT1H LTR MaLR 1 545 -4 581 199 40 189 chr11 32552404 32552568 -116230904 + L1MC4a LINE L1 6994 7181 -780 302 323 55 18 chr11 32552718 32552882 -116230590 + L1MC5 LINE L1 7276 7445 -516 362 224 68 59 chr11 32552914 32553133 -116230339 + L1MC5 LINE L1 7548 7768 -193 353 251 71 33 chr11 32553726 32553909 -116229563 - L1ME4a LINE L1 -84 6037 5848 406 312 90 17 chr11 32554015 32554316 -116229156 - L1ME4a LINE L1 -430 5691 5369 270 341 14 58 chr11 32555523 32555661 -116227811 + L2 LINE L2 3136 3267 -5 670 205 99 29 chr11 32555997 32556168 -116227304 + LTR41 LTR ERVL 1 183 -590 2199 128 59 47 chr11 32556422 32556798 -116226674 + MSTC LTR MaLR 1 384 -44 2125 122 13 10 chr11 32556798 32557101 -116226371 - AluSx SINE Alu -8 304 1 2199 128 59 47 chr11 32557101 32557147 -116226325 + MSTC LTR MaLR 384 428 0 2255 49 59 3 chr11 32557658 32557946 -116225526 + AluY SINE Alu 1 304 -7 357 212 150 44 chr11 32558519 32558632 -116224840 + L2 LINE L2 3189 3313 0 189 0 0 0 chr11 32559151 32559172 -116224300 + (A)n Simple_repeat Simple_repeat 1 21 0 384 260 45 48 chr11 32559281 32559550 -116223922 - L1MC5 LINE L1 -179 7782 7515 228 343 0 0 chr11 32560802 32560869 -116222603 - L2 LINE L2 0 3272 3206 893 316 61 25 chr11 32562898 32563293 -116220179 - L2 LINE L2 -79 3234 2826 344 286 244 35 chr11 32563629 32563940 -116219532 + L3 LINE CR1 1167 1542 -35 21 0 0 0 chr11 32565595 32565616 -116217856 + AT_rich Low_complexity Low_complexity 1 21 0 472 204 107 92 chr11 32567180 32567376 -116216096 + L1MD2 LINE L1 5684 5882 -477 22 56 0 0 chr11 32567424 32567460 -116216012 + AT_rich Low_complexity Low_complexity 1 36 0 459 216 0 0 chr11 32567472 32567588 -116215884 + GA-rich Low_complexity Low_complexity 3 118 0 962 247 23 5 chr11 32567612 32567831 -116215641 + MER58A DNA MER1_type 2 224 0 304 247 14 82 chr11 32567854 32568000 -116215472 + L1ME4a LINE L1 5986 6121 0 33 0 0 0 chr11 32568119 32568152 -116215320 + AT_rich Low_complexity Low_complexity 1 33 0 1869 139 11 4 chr11 32568152 32568433 -116215039 - AluSx SINE Alu -27 285 3 214 291 10 97 chr11 32569276 32569309 -116214163 + MIR SINE MIR 167 201 -61 1972 145 3 3 chr11 32569309 32569606 -116213866 + AluSx SINE Alu 1 297 -15 214 291 10 97 chr11 32569606 32569675 -116213797 + MIR SINE MIR 201 260 -2 278 222 256 40 chr11 32570044 32570220 -116213252 + MIR SINE MIR 15 228 -34 209 379 0 0 chr11 32570691 32570757 -116212715 - L2 LINE L2 -220 3052 2987 716 200 0 8 chr11 32571333 32571458 -116212014 + FLAM_C SINE Alu 1 124 -9 303 175 0 0 chr11 32571890 32571947 -116211525 + A-rich Low_complexity Low_complexity 1 57 0 375 353 14 7 chr11 32572016 32572155 -116211317 - MIR3 SINE MIR -68 140 1 2410 155 36 7 chr11 32572503 32572923 -116210549 + MSTB1 LTR MaLR 1 432 0 239 234 75 43 chr11 32574721 32574815 -116208657 - MER91C DNA MER1_type -22 118 22 208 208 0 21 chr11 32576568 32576616 -116206856 - L2 LINE L2 -2 3311 3265 222 343 49 20 chr11 32577009 32577111 -116206361 - L2 LINE L2 0 3313 3209 201 355 13 32 chr11 32577318 32577473 -116205999 - L2 LINE L2 -802 2512 2361 616 280 79 16 chr11 32577833 32578211 -116205261 - L1M4 LINE L1 -2134 4012 3611 1657 316 43 50 chr11 32578290 32579443 -116204029 - HERVI LTR ERV1 -216 6433 5289 2243 106 3 10 chr11 32580059 32580370 -116203102 - AluSg SINE Alu -1 309 1 1134 331 10 8 chr11 32580476 32580968 -116202504 - HERVI LTR ERV1 -2029 5756 5264 2029 109 26 10 chr11 32581019 32581332 -116202140 + LTR19C LTR ERV1 98 415 -364 602 296 80 46 chr11 32581602 32582260 -116201212 - HERVI LTR ERV1 -4558 2091 1624 323 315 0 37 chr11 32582614 32582776 -116200696 + CT-rich Low_complexity Low_complexity 2 157 0 520 62 0 25 chr11 32582792 32582872 -116200600 - LTR18B LTR ERVL -269 345 268 455 133 0 13 chr11 32582918 32582993 -116200479 - LTR18B LTR ERVL -209 405 332 565 343 8 4 chr11 32583060 32583299 -116200173 - HERVI LTR ERV1 -6768 1017 778 755 275 97 34 chr11 32584373 32584634 -116198838 - L1M4 LINE L1 -2587 3559 3316 3310 121 6 22 chr11 32584634 32585139 -116198333 + LOR1a LTR ERV1 1 497 0 755 275 97 34 chr11 32585139 32585586 -116197886 - L1M4 LINE L1 -2830 3316 2806 1228 284 95 5 chr11 32585631 32586103 -116197369 + L2 LINE L2 2534 3070 -243 215 359 76 0 chr11 32588800 32588892 -116194580 + L2 LINE L2 3197 3295 -18 2433 91 0 0 chr11 32589478 32589785 -116193687 - AluSg SINE Alu -3 307 1 2036 136 3 0 chr11 32589930 32590216 -116193256 + AluSq SINE Alu 1 287 -26 603 40 0 0 chr11 32590216 32590290 -116193182 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 418 249 24 30 chr11 32591634 32591803 -116191669 + L1MEd LINE L1 1387 1554 -4976 * 5544 155 17 22 chr11 32591798 32592417 -116191055 + L1MA4 LINE L1 4698 5319 -981 9577 86 1 0 chr11 32592417 32594531 -116188941 + L1PA7 LINE L1 4041 6150 -4 5544 155 17 22 chr11 32594531 32595526 -116187946 + L1MA4 LINE L1 5319 6291 -9 22 0 0 0 chr11 32595526 32595548 -116187924 + AT_rich Low_complexity Low_complexity 1 22 0 582 256 103 34 chr11 32595550 32596016 -116187456 + L1MEd LINE L1 1544 2102 -4549 385 336 78 37 chr11 32596247 32596518 -116186954 + L1MEd LINE L1 2403 2684 -4037 742 250 105 16 chr11 32596525 32596829 -116186643 + L1MEd LINE L1 2643 2973 -3567 23 0 0 0 chr11 32597258 32597281 -116186191 + AT_rich Low_complexity Low_complexity 1 23 0 216 58 47 70 chr11 32597751 32597837 -116185635 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 27 0 0 0 chr11 32598053 32598080 -116185392 + AT_rich Low_complexity Low_complexity 1 27 0 835 179 12 18 chr11 32598184 32598352 -116185120 + L1M4 LINE L1 5576 5742 -432 2546 48 0 13 chr11 32598521 32598833 -116184639 - AluY SINE Alu -3 308 1 1561 313 63 36 chr11 32599631 32600482 -116182990 + L2 LINE L2 360 1233 -2081 607 278 113 10 chr11 32600491 32600685 -116182787 + MER20B DNA MER1_type 15 228 -555 752 165 0 16 chr11 32600727 32600854 -116182618 - FLAM_C SINE Alu -18 125 1 1244 235 81 24 chr11 32600863 32601319 -116182153 + MER20B DNA MER1_type 301 782 -1 1654 278 122 11 chr11 32601321 32602025 -116181447 + L2 LINE L2 1215 1996 -1318 578 300 51 51 chr11 32602025 32602378 -116181094 + MERVL LTR ERVL 3141 3493 -1992 1122 329 37 12 chr11 32602387 32602873 -116180599 + MERVL LTR ERVL 3595 4092 -1672 682 343 70 11 chr11 32602885 32603343 -116180129 + MERVL LTR ERVL 4432 4916 -569 22 0 0 0 chr11 32605342 32605364 -116178108 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr11 32606602 32606650 -116176822 + AT_rich Low_complexity Low_complexity 1 48 0 824 291 107 13 chr11 32607893 32608202 -116175270 + MLT1J LTR MaLR 4 341 -170 8785 16 0 0 chr11 32610123 32611910 -116171562 - L1HS LINE L1 -4 6151 4365 1200 21 0 0 chr11 32611903 32612047 -116171425 + L1HS LINE L1 4218 4361 -1785 * 223 323 46 0 chr11 32612799 32612864 -116170608 + L2 LINE L2 3246 3313 0 1089 185 24 58 chr11 32612880 32613172 -116170300 + MER44D DNA MER2_type 1 552 -57 197 68 40 54 chr11 32613172 32613246 -116170226 + (TA)n Simple_repeat Simple_repeat 2 74 0 384 164 0 0 chr11 32613246 32613307 -116170165 + MER44D DNA MER2_type 519 579 -26 1602 215 98 44 chr11 32613633 32614112 -116169360 + MLT1D LTR MaLR 1 505 0 7341 173 61 52 chr11 32614412 32616118 -116167354 + L1MA4A LINE L1 13 2049 -4799 2531 74 0 0 chr11 32616118 32616427 -116167045 - AluY SINE Alu -2 309 1 7341 173 61 52 chr11 32616427 32617318 -116166154 + L1MA4A LINE L1 2049 2931 -3917 2184 143 35 22 chr11 32617318 32617508 -116165964 + MSTA LTR MaLR 1 187 -241 2041 139 0 7 chr11 32617508 32617809 -116165663 + AluSx SINE Alu 1 299 -13 2184 143 35 22 chr11 32617809 32617988 -116165484 + MSTA LTR MaLR 187 375 -53 14295 162 33 10 chr11 32618015 32621991 -116161481 + L1MA4A LINE L1 2930 6999 -6 354 258 31 127 chr11 32622006 32622166 -116161306 - L1ME LINE L1 -338 5783 5656 1717 165 7 7 chr11 32622166 32622457 -116161015 + AluJb SINE Alu 1 291 -21 354 258 31 127 chr11 32622457 32622556 -116160916 - L1ME LINE L1 -465 5656 5549 393 393 0 0 chr11 32622830 32622947 -116160525 + L2 LINE L2 3137 3253 -19 2493 119 17 5 chr11 32623002 32623298 -116160174 - L1MA4A LINE L1 -5 6298 5994 432 0 0 0 chr11 32623298 32623346 -116160126 + (CA)n Simple_repeat Simple_repeat 2 49 0 2493 119 17 5 chr11 32623346 32623462 -116160010 - L1MA4A LINE L1 -309 5994 5881 1005 133 75 0 chr11 32623634 32623807 -116159665 + L1M2 LINE L1 2 187 -6662 379 284 63 47 chr11 32624610 32624737 -116158735 + L2 LINE L2 3137 3265 -7 334 303 123 52 chr11 32624779 32624934 -116158538 + MER115 DNA AcHobo 67 232 -461 3193 152 44 5 chr11 32625290 32625862 -116157610 + L1PB4 LINE L1 5559 6152 -4 336 305 11 0 chr11 32625865 32625960 -116157512 + MIR SINE MIR 147 242 -20 29 0 0 0 chr11 32626521 32626550 -116156922 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 32628152 32628173 -116155299 + AT_rich Low_complexity Low_complexity 1 21 0 436 259 0 22 chr11 32629985 32630124 -116153348 - L1ME2 LINE L1 0 6164 6029 774 296 21 39 chr11 32630483 32630763 -116152709 - MLT1J LTR MaLR -6 505 231 2352 104 0 0 chr11 32630841 32631149 -116152323 - AluSc SINE Alu -1 308 1 2068 129 0 0 chr11 32631516 32631833 -116151639 - AluSx SINE Alu 0 319 3 900 322 96 50 chr11 32631881 32632215 -116151257 - L2 LINE L2 -7 3306 2989 1509 128 18 0 chr11 32632215 32632441 -116151031 - MER30 DNA MER1_type 0 230 1 900 322 96 50 chr11 32632441 32633014 -116150458 - L2 LINE L2 -324 2989 2344 242 288 6 110 chr11 32633010 32633129 -116150343 + L2 LINE L2 2824 2923 -391 * 1536 128 18 0 chr11 32633129 32633355 -116150117 + MER30 DNA MER1_type 1 230 0 242 288 6 110 chr11 32633355 32633398 -116150074 + L2 LINE L2 2923 2969 -345 743 316 130 5 chr11 32633426 32633796 -116149676 - L2 LINE L2 -977 2337 1922 240 167 0 0 chr11 32635798 32635846 -116147626 + L1MA9 LINE L1 6227 6274 -38 239 277 96 32 chr11 32636471 32636565 -116146907 - L2 LINE L2 -4 3268 3169 23 33 0 0 chr11 32637547 32637577 -116145895 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 32637597 32637619 -116145853 + AT_rich Low_complexity Low_complexity 1 22 0 256 194 60 0 chr11 32637685 32637752 -116145720 + L1MD3 LINE L1 2869 2939 -3207 3099 248 38 13 chr11 32637790 32638823 -116144649 + L1MD3 LINE L1 2933 3991 -2155 1275 167 50 0 chr11 32638827 32639048 -116144424 - AluSx SINE Alu -18 294 63 219 69 0 0 chr11 32639048 32639077 -116144395 + (TA)n Simple_repeat Simple_repeat 2 30 0 216 93 113 7 chr11 32639128 32639279 -116144193 + (TA)n Simple_repeat Simple_repeat 2 168 0 33 0 0 0 chr11 32639282 32639315 -116144157 + AT_rich Low_complexity Low_complexity 1 33 0 6388 212 108 85 chr11 32639321 32640927 -116142545 + L1MD3 LINE L1 4018 5586 -2409 1168 197 12 113 chr11 32640927 32641333 -116142139 + MLT1A1 LTR MaLR 1 365 0 6388 212 108 85 chr11 32641333 32641849 -116141623 + L1MD3 LINE L1 5586 6089 -1906 183 80 0 0 chr11 32641849 32641874 -116141598 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6388 212 108 85 chr11 32641874 32642323 -116141149 + L1MD3 LINE L1 6089 6526 -1469 249 33 0 0 chr11 32642323 32642353 -116141119 + (TG)n Simple_repeat Simple_repeat 2 31 0 6388 212 108 85 chr11 32642353 32642533 -116140939 + L1MD3 LINE L1 6526 6700 -1295 1799 171 10 3 chr11 32642533 32642825 -116140647 + AluJo SINE Alu 4 297 -15 6388 212 108 85 chr11 32642825 32643243 -116140229 + L1MD3 LINE L1 6700 7107 -888 550 213 82 8 chr11 32643243 32643365 -116140107 + MLT1F1 LTR MaLR 1 131 -436 6388 212 108 85 chr11 32643365 32643950 -116139522 + L1MD3 LINE L1 7107 7982 -13 248 388 61 7 chr11 32644087 32644234 -116139238 + MIR3 SINE MIR 29 183 -25 396 127 38 13 chr11 32645338 32645417 -116138055 - L1MC4 LINE L1 -2 8040 7960 1293 190 25 44 chr11 32645452 32645768 -116137704 - L1MC4 LINE L1 -749 7293 6984 265 226 24 0 chr11 32647592 32647676 -116135796 + (TA)n Simple_repeat Simple_repeat 2 87 0 289 275 62 81 chr11 32648011 32648171 -116135301 - L2 LINE L2 -189 3083 2927 233 324 130 5 chr11 32648416 32648632 -116134840 - L2 LINE L2 -788 2526 2284 662 280 43 26 chr11 32648908 32648927 -116134545 + MIR SINE MIR 8 25 -237 2230 61 3 34 chr11 32648927 32649223 -116134249 + AluY SINE Alu 18 304 -7 662 280 43 26 chr11 32649223 32649453 -116134019 + MIR SINE MIR 25 262 0 234 0 0 0 chr11 32650471 32650497 -116132975 + (A)n Simple_repeat Simple_repeat 1 26 0 336 331 91 31 chr11 32650588 32651005 -116132467 + L2 LINE L2 1863 2304 -1010 810 256 40 18 chr11 32651012 32651235 -116132237 + MIR SINE MIR 29 256 -6 186 298 95 12 chr11 32651560 32651644 -116131828 + MIR3 SINE MIR 115 205 -3 222 309 81 40 chr11 32652028 32652177 -116131295 - L2 LINE L2 -2512 802 648 2225 107 3 0 chr11 32652181 32652481 -116130991 - AluSx SINE Alu -11 301 1 251 352 104 39 chr11 32652510 32652896 -116130576 - L2 LINE L2 -2807 507 97 21 36 0 0 chr11 32653356 32653384 -116130088 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 32653735 32653759 -116129713 + AT_rich Low_complexity Low_complexity 1 24 0 510 141 0 24 chr11 32653870 32653955 -116129517 - MLT1E LTR MaLR 0 654 572 315 0 0 0 chr11 32653957 32653992 -116129480 + (TG)n Simple_repeat Simple_repeat 2 36 0 1392 177 244 40 chr11 32653995 32654254 -116129218 - MLT2B1 LTR ERVL -71 449 244 2043 119 71 20 chr11 32654254 32654608 -116128864 - THE1C LTR MaLR -3 372 1 1392 177 244 40 chr11 32654608 32654721 -116128751 - MLT2B1 LTR ERVL -276 244 1 1513 257 86 38 chr11 32654726 32655204 -116128268 - MLT1E LTR MaLR -92 501 1 250 219 153 36 chr11 32655508 32655645 -116127827 + L1ME3A LINE L1 4796 4948 -1198 466 237 136 21 chr11 32655855 32656135 -116127337 + L1ME3A LINE L1 5189 5491 -679 343 331 57 6 chr11 32656152 32656309 -116127163 + L1ME3A LINE L1 5555 5719 -451 2378 117 117 5 chr11 32656391 32656776 -116126696 + MSTA LTR MaLR 1 428 0 1784 179 3 25 chr11 32656834 32657153 -116126319 + AluJb SINE Alu 1 312 0 374 262 68 29 chr11 32657163 32657369 -116126103 + L1ME3A LINE L1 5743 5956 -214 237 245 47 75 chr11 32657867 32657973 -116125499 + L2 LINE L2 3195 3297 -16 425 212 0 0 chr11 32658458 32658543 -116124929 + MLT1F LTR MaLR 1 85 -457 * 598 194 146 6 chr11 32658533 32658698 -116124774 + MLT1F1 LTR MaLR 6 193 -197 273 221 0 0 chr11 32658705 32658773 -116124699 + CT-rich Low_complexity Low_complexity 2 69 0 1362 205 95 15 chr11 32658782 32659119 -116124353 + MLT1F1 LTR MaLR 189 552 -15 2220 73 3 7 chr11 32659464 32659766 -116123706 - AluY SINE Alu -10 301 1 554 277 134 0 chr11 32660560 32660763 -116122709 + MIR SINE MIR 23 259 -3 185 239 11 114 chr11 32661127 32661215 -116122257 - L2 LINE L2 -289 2983 2905 701 186 34 45 chr11 32661219 32661396 -116122076 - MER5B DNA MER1_type -3 175 1 259 199 38 53 chr11 32661563 32661694 -116121778 - Charlie7 DNA MER1_type -70 2542 2414 1598 163 7 33 chr11 32661695 32661996 -116121476 + Tigger2a DNA MER2_type 2 294 -140 26 0 0 0 chr11 32662004 32662030 -116121442 + AT_rich Low_complexity Low_complexity 1 26 0 1644 157 7 43 chr11 32662106 32662411 -116121061 - AluJb SINE Alu -18 294 1 1073 248 41 52 chr11 32662411 32662870 -116120602 - Charlie7 DNA MER1_type -239 2373 1920 196 239 155 63 chr11 32662953 32663095 -116120377 - MIR SINE MIR -10 252 98 377 310 92 35 chr11 32663541 32663770 -116119702 + MIR SINE MIR 13 254 -8 599 314 137 26 chr11 32664129 32664700 -116118772 + L2 LINE L2 2679 3312 -1 33 0 0 0 chr11 32665103 32665136 -116118336 + AT_rich Low_complexity Low_complexity 1 33 0 661 153 9 0 chr11 32665138 32665249 -116118223 - FLAM_C SINE Alu -25 118 7 258 253 71 0 chr11 32665403 32665502 -116117970 + L1MC4a LINE L1 5260 5365 -2443 1296 294 74 28 chr11 32665533 32666246 -116117226 + L1MC4a LINE L1 5427 6172 -1636 1579 225 48 29 chr11 32666630 32667047 -116116425 - MLT1C LTR MaLR -41 464 3 407 19 19 0 chr11 32667162 32667214 -116116258 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr11 32668111 32668132 -116115340 + AT_rich Low_complexity Low_complexity 1 21 0 248 299 126 35 chr11 32668495 32668669 -116114803 + L1MC/D LINE L1 5579 5768 -2040 243 343 14 0 chr11 32668822 32668895 -116114577 - L2 LINE L2 0 3272 3199 684 283 78 22 chr11 32669048 32669458 -116114014 - L1ME4a LINE L1 0 6121 5689 215 213 51 47 chr11 32670278 32670365 -116113107 - MIR SINE MIR -63 199 45 22 0 0 0 chr11 32674046 32674068 -116109404 + AT_rich Low_complexity Low_complexity 1 22 0 250 129 43 43 chr11 32677785 32677855 -116105617 - L1MC4 LINE L1 -1337 6705 6636 617 200 12 19 chr11 32677916 32678076 -116105396 - L1MD3 LINE L1 -842 7153 6995 489 221 10 19 chr11 32678180 32678284 -116105188 + Tigger3(Golem) DNA MER2_type 2 104 -2925 * 4167 128 54 10 chr11 32678279 32678377 -116105095 + Tigger3(Golem) DNA MER2_type 2277 2369 -659 2167 109 3 13 chr11 32678377 32678679 -116104793 + AluSx SINE Alu 1 299 -13 4167 128 54 10 chr11 32678679 32679300 -116104172 + Tigger3(Golem) DNA MER2_type 2369 3028 0 3717 215 70 15 chr11 32679642 32680595 -116102877 - L1MC4a LINE L1 0 7808 6803 227 335 58 40 chr11 32680746 32680919 -116102553 - L3b LINE CR1 -235 1348 1173 376 176 149 0 chr11 32681134 32681208 -116102264 + MER2 DNA MER2_type 1 85 -260 671 293 86 9 chr11 32681367 32681599 -116101873 - MIR SINE MIR -11 251 2 2081 53 24 95 chr11 32681943 32682281 -116101191 - AluYb8 SINE Alu -4 314 1 793 61 2 0 chr11 32682452 32682558 -116100914 - L1PA5 LINE L1 -209 5946 5852 1384 44 39 0 chr11 32682558 32682736 -116100736 + L1PA5 LINE L1 5956 6142 -12 25 65 0 0 chr11 32683605 32683651 -116099821 + AT_rich Low_complexity Low_complexity 1 46 0 365 294 88 25 chr11 32683883 32684043 -116099429 + MIR SINE MIR 3 172 -90 265 264 0 0 chr11 32684321 32684374 -116099098 + MIR SINE MIR 205 257 -5 408 236 201 0 chr11 32684833 32684977 -116098495 - MER5A DNA MER1_type 0 189 17 304 227 92 126 chr11 32685597 32685835 -116097637 - L2 LINE L2 0 3313 3084 727 265 85 18 chr11 32685931 32686154 -116097318 - MIR SINE MIR -23 239 2 276 263 286 6 chr11 32686154 32686318 -116097154 - MIR SINE MIR -37 225 13 234 273 0 18 chr11 32686709 32686764 -116096708 + MIR SINE MIR 74 127 -81 399 337 25 6 chr11 32687231 32687394 -116096078 + MLT1K LTR MaLR 1 166 -422 1617 162 114 3 chr11 32687445 32687753 -116095719 - MER7A DNA MER2_type 0 346 7 207 148 0 37 chr11 32688300 32688354 -116095118 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 1953 227 54 62 chr11 32688479 32688714 -116094758 + MLT1E2 LTR MaLR 1 236 -390 2425 66 0 3 chr11 32688714 32689017 -116094455 + AluY SINE Alu 1 302 -9 1953 227 54 62 chr11 32689017 32689412 -116094060 + MLT1E2 LTR MaLR 236 626 0 195 129 0 0 chr11 32689895 32689926 -116093546 + (T)n Simple_repeat Simple_repeat 1 31 0 1865 210 147 12 chr11 32690338 32690834 -116092638 - L1MD2 LINE L1 0 6359 5797 433 319 147 5 chr11 32692499 32692690 -116090782 - MIR SINE MIR -12 250 33 2234 81 0 14 chr11 32693090 32693385 -116090087 + AluY SINE Alu 1 291 -20 220 360 0 12 chr11 32693884 32693970 -116089502 + L2 LINE L2 3229 3313 0 15054 195 35 11 chr11 32694015 32700522 -116082950 + L1PB1 LINE L1 6 6861 -6 1352 248 77 97 chr11 32700601 32701468 -116082004 + L1MEc LINE L1 1973 2761 -3454 1883 156 3 10 chr11 32701468 32701769 -116081703 + AluSx SINE Alu 1 299 -13 1352 248 77 97 chr11 32701769 32702112 -116081360 + L1MEc LINE L1 2761 3110 -3105 374 243 9 93 chr11 32702501 32702608 -116080864 + L2 LINE L2 3160 3257 -15 745 278 122 17 chr11 32702825 32703315 -116080157 - L2 LINE L2 -1 3312 2621 31 0 0 0 chr11 32707169 32707200 -116076272 + AT_rich Low_complexity Low_complexity 1 31 0 1857 63 0 0 chr11 32707317 32707554 -116075918 - L1PA3 LINE L1 -3 6152 5916 3978 34 0 0 chr11 32707554 32708029 -116075443 + L1P2 LINE L1 5327 5801 -354 768 173 0 0 chr11 32708115 32708242 -116075230 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr11 32708242 32708270 -116075202 + AT_rich Low_complexity Low_complexity 1 28 0 189 292 14 14 chr11 32709946 32710018 -116073454 - MIR SINE MIR 0 262 191 508 223 19 11 chr11 32710802 32710921 -116072551 - MIR SINE MIR -63 145 71 2131 142 51 3 chr11 32711184 32711558 -116071914 + L1MC1 LINE L1 5936 6327 -6 2584 211 76 9 chr11 32711577 32712558 -116070914 + L1MB8 LINE L1 5102 6172 -6 706 116 0 39 chr11 32712736 32712865 -116070607 - L1MA4 LINE L1 0 6300 6177 2446 68 0 0 chr11 32713374 32713669 -116069803 - AluY SINE Alu -16 295 1 342 189 105 53 chr11 32715041 32715136 -116068336 + MIR SINE MIR 6 105 -157 767 294 141 16 chr11 32715496 32715999 -116067473 - L1ME4a LINE L1 0 6121 5556 335 203 14 0 chr11 32715999 32716073 -116067399 + MLT1F LTR MaLR 8 82 -460 1045 257 176 36 chr11 32716201 32716594 -116066878 + MLT1F LTR MaLR 95 542 0 430 308 63 32 chr11 32716598 32717021 -116066451 - L1ME4a LINE L1 -593 5528 5089 473 267 0 0 chr11 32717366 32717467 -116066005 - MIR SINE MIR -105 157 57 654 244 195 26 chr11 32718505 32718812 -116064660 - LTR41 LTR ERVL -6 767 409 1578 186 32 70 chr11 32718845 32719217 -116064255 + MLT1A1 LTR MaLR 1 358 -7 982 223 15 0 chr11 32719217 32719419 -116064053 + MLT1A1-int LTR MaLR 2 206 -1529 4848 151 38 13 chr11 32719430 32720306 -116063166 - L1PB4 LINE L1 -5 6151 5254 301 188 0 0 chr11 32720317 32720365 -116063107 - Alu SINE Alu -253 48 1 2250 85 3 26 chr11 32720371 32720677 -116062795 - AluSp SINE Alu -14 299 1 991 169 18 37 chr11 32720680 32720854 -116062618 - L1M2 LINE L1 -4774 2075 1899 198 0 0 0 chr11 32720854 32720876 -116062596 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1718 180 18 0 chr11 32720879 32721162 -116062310 - AluJo SINE Alu -24 288 1 991 169 18 37 chr11 32721162 32721256 -116062216 - L1M2 LINE L1 -4952 1897 1808 * 1022 285 64 18 chr11 32721246 32721636 -116061836 - L1PA15-16 LINE L1 -6436 413 6 547 194 37 0 chr11 32721630 32721738 -116061734 + MLT1A1-int LTR MaLR 187 298 -1437 * 315 238 0 0 chr11 32721746 32721809 -116061663 + MER58A DNA MER1_type 46 108 0 587 257 56 64 chr11 32721843 32722092 -116061380 - L1ME LINE L1 -359 5811 5565 186 349 23 68 chr11 32723268 32723400 -116060072 - MER5A DNA MER1_type -43 146 21 2969 237 79 18 chr11 32723514 32724247 -116059225 + MER21B LTR ERV1 26 803 -60 437 325 19 13 chr11 32724731 32724888 -116058584 - MIR3 SINE MIR -13 195 38 241 269 221 19 chr11 32725579 32725683 -116057789 + L2 LINE L2 3147 3271 -1 2118 92 7 7 chr11 32725846 32726158 -116057314 + AluSq SINE Alu 1 312 0 331 311 43 38 chr11 32726709 32726831 -116056641 + MIR SINE MIR 27 148 -78 199 220 0 60 chr11 32726919 32726969 -116056503 - MIR3 SINE MIR -42 166 120 307 221 21 14 chr11 32727086 32727231 -116056241 + (TA)n Simple_repeat Simple_repeat 2 147 0 692 242 63 102 chr11 32728011 32728296 -116055176 - Charlie8 DNA MER1_type -2142 275 2 21 36 0 0 chr11 32728865 32728893 -116054579 + AT_rich Low_complexity Low_complexity 1 28 0 2450 214 65 63 chr11 32729689 32730217 -116053255 - L1ME1 LINE L1 0 6403 5878 261 0 0 0 chr11 32730217 32730246 -116053226 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1580 148 0 82 chr11 32730247 32730551 -116052921 - AluJb SINE Alu -33 279 1 2450 214 65 63 chr11 32730551 32731236 -116052236 - L1ME1 LINE L1 -524 5879 5052 4857 251 67 23 chr11 32731240 32733243 -116050229 - L1ME1 LINE L1 -2313 3902 1754 1449 186 73 11 chr11 32733243 32733518 -116049954 - AluJb SINE Alu -20 292 1 4857 251 67 23 chr11 32733518 32734465 -116049007 - L1ME1 LINE L1 -4461 1754 850 795 252 35 31 chr11 32734839 32735065 -116048407 + MIR SINE MIR 1 227 -35 499 312 35 6 chr11 32736929 32737099 -116046373 - MIR SINE MIR -6 256 82 430 272 61 14 chr11 32737219 32737366 -116046106 - MIR3 SINE MIR -2 206 53 278 229 160 53 chr11 32737471 32737602 -116045870 + MIR SINE MIR 118 262 0 224 239 0 56 chr11 32738844 32738915 -116044557 - L2 LINE L2 -1 3312 3246 5532 38 12 1 chr11 32739313 32739991 -116043481 - L1PA7 LINE L1 -1 6153 5469 210 71 0 0 chr11 32741422 32741450 -116042022 + (TG)n Simple_repeat Simple_repeat 1 28 0 340 339 73 12 chr11 32743840 32744005 -116039467 + L2 LINE L2 2686 2860 -454 2341 95 0 0 chr11 32744229 32744535 -116038937 - AluSc SINE Alu -3 306 1 272 329 86 21 chr11 32744799 32744939 -116038533 - L2 LINE L2 -4 3309 3161 26 82 0 0 chr11 32746244 32746305 -116037167 + AT_rich Low_complexity Low_complexity 1 61 0 2129 121 0 0 chr11 32746315 32746613 -116036859 + AluSx SINE Alu 3 300 -12 721 170 216 0 chr11 32747206 32747377 -116036095 - MER3 DNA MER1_type 0 209 2 731 261 23 68 chr11 32747379 32747643 -116035829 + MIR SINE MIR 11 262 0 1279 251 89 18 chr11 32748878 32749439 -116034033 + L1MC4 LINE L1 7442 8042 0 1473 134 5 5 chr11 32753638 32753854 -116029618 - AluJb SINE Alu -13 299 84 231 125 0 0 chr11 32754909 32754949 -116028523 + (CATA)n Simple_repeat Simple_repeat 2 41 0 270 236 0 0 chr11 32754984 32755039 -116028433 - Tigger6 DNA MER2_type -1542 55 1 22 35 0 0 chr11 32755795 32755824 -116027648 + AT_rich Low_complexity Low_complexity 1 29 0 520 196 49 136 chr11 32757352 32757536 -116025936 - L2 LINE L2 0 3313 3146 1269 191 127 78 chr11 32757539 32757811 -116025661 - MER69 DNA AcHobo -3 2523 2215 3253 53 0 0 chr11 32757811 32758223 -116025249 - L1PA5 LINE L1 -3 6151 5740 1269 191 127 78 chr11 32758223 32758438 -116025034 - MER69 DNA AcHobo -311 2215 2012 1410 267 201 8 chr11 32758439 32758911 -116024561 - MER69 DNA AcHobo -659 567 5 720 252 198 49 chr11 32758915 32759455 -116024017 - L2 LINE L2 -162 3151 2540 654 294 98 13 chr11 32760174 32760569 -116022903 - LTR16A LTR ERVL 0 491 1 184 221 147 15 chr11 32760638 32760706 -116022766 - MIR SINE MIR -121 141 65 23 33 0 0 chr11 32761186 32761216 -116022256 + AT_rich Low_complexity Low_complexity 1 30 0 449 250 83 0 chr11 32765006 32765138 -116018334 + MER69 DNA AcHobo 2383 2525 -1 288 260 14 27 chr11 32766884 32766957 -116016515 - MER5B DNA MER1_type -3 175 104 1908 225 94 60 chr11 32766961 32768017 -116015455 + MER63C DNA MER1_type 5 925 -5 235 271 59 59 chr11 32768019 32768104 -116015368 + MER5B DNA MER1_type 78 162 -16 316 192 288 0 chr11 32768316 32768389 -116015083 + MER81 DNA DNA 2 95 -19 345 148 0 74 chr11 32768396 32768477 -116014995 + MER3 DNA MER1_type 135 209 0 1983 107 0 0 chr11 32768576 32768865 -116014607 - L1P LINE L1 -2032 4114 3826 6204 97 22 3 chr11 32768865 32770454 -116013018 + L1PA10 LINE L1 4555 6164 -4 26 74 0 0 chr11 32772567 32772621 -116010851 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr11 32772751 32772775 -116010697 + AT_rich Low_complexity Low_complexity 1 24 0 235 313 43 0 chr11 32773141 32773228 -116010244 + MIR SINE MIR 23 116 -107 1063 216 0 43 chr11 32773915 32774147 -116009325 - MER58A DNA MER1_type -1 223 2 391 386 38 0 chr11 32774522 32774680 -116008792 - MIR3 SINE MIR -39 169 6 907 244 30 60 chr11 32774850 32775149 -116008323 + MLT1I LTR MaLR 101 390 -19 303 216 0 105 chr11 32775375 32775419 -116008053 + A-rich Low_complexity Low_complexity 2 49 -89 2854 13 0 0 chr11 32775419 32775732 -116007740 + AluYb8 SINE Alu 1 313 -5 303 216 0 105 chr11 32775732 32775840 -116007632 + A-rich Low_complexity Low_complexity 49 138 0 2270 110 3 0 chr11 32778212 32778521 -116004951 - AluSx SINE Alu -2 310 1 699 307 53 14 chr11 32778779 32779179 -116004293 + LTR16B LTR ERVL 8 464 0 1778 189 0 3 chr11 32779231 32779527 -116003945 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr11 32779527 32779549 -116003923 + AT_rich Low_complexity Low_complexity 1 22 0 2334 65 17 0 chr11 32781874 32782166 -116001306 - AluSg SINE Alu -13 297 1 563 154 8 86 chr11 32783491 32783608 -115999864 - MER58A DNA MER1_type -1 223 116 200 184 20 0 chr11 32783618 32783667 -115999805 + (TA)n Simple_repeat Simple_repeat 2 51 0 350 258 0 72 chr11 32783705 32783802 -115999670 - MER58A DNA MER1_type -17 90 1 294 29 0 0 chr11 32786993 32787028 -115996444 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 74 0 0 chr11 32787175 32787229 -115996243 + AT_rich Low_complexity Low_complexity 1 54 0 33 43 0 0 chr11 32787795 32787842 -115995630 + AT_rich Low_complexity Low_complexity 1 47 0 207 294 0 0 chr11 32788317 32788368 -115995104 + MIR SINE MIR 48 98 -164 1907 115 19 39 chr11 32788643 32788955 -115994517 - AluSx SINE Alu -6 306 1 252 300 36 61 chr11 32788955 32789232 -115994240 - L1ME LINE L1 -502 5619 5350 26 0 0 0 chr11 32789510 32789536 -115993936 + AT_rich Low_complexity Low_complexity 1 26 0 383 196 31 21 chr11 32789644 32789741 -115993731 - MER46C DNA MER2_type -2 336 239 2064 112 3 45 chr11 32790592 32790904 -115992568 - AluSx SINE Alu -13 299 1 225 132 0 0 chr11 32792729 32792767 -115990705 + (A)n Simple_repeat Simple_repeat 1 38 0 1308 133 177 20 chr11 32792783 32793056 -115990416 + AluSx SINE Alu 1 312 0 229 30 0 0 chr11 32793201 32793234 -115990238 + Alu SINE Alu 263 295 -7 340 235 69 93 chr11 32793243 32793268 -115990204 + L1ME4a LINE L1 5611 5635 -486 4824 91 39 13 chr11 32793268 32793762 -115989710 - L1PB2 LINE L1 0 6151 5631 5149 78 1 27 chr11 32793762 32794468 -115989004 + LTR12 LTR ERV1 1 688 0 4824 91 39 13 chr11 32794468 32794685 -115988787 - L1ME4a LINE L1 -520 5631 5421 340 235 69 93 chr11 32794685 32794924 -115988548 + L1ME4a LINE L1 5635 5883 -238 228 35 0 0 chr11 32795091 32795120 -115988352 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 307 295 0 21 chr11 32795637 32795732 -115987740 - MIR SINE MIR -137 125 33 1250 129 117 0 chr11 32796364 32796612 -115986860 + L1MA7 LINE L1 6015 6291 0 543 255 34 20 chr11 32796782 32796931 -115986541 - MLT1J1 LTR MaLR -295 151 1 227 283 103 21 chr11 32797636 32797781 -115985691 + L2 LINE L2 2701 2857 -457 2133 105 0 0 chr11 32798019 32798304 -115985168 + AluSx SINE Alu 1 285 -27 297 0 0 0 chr11 32798304 32798337 -115985135 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 65 0 0 chr11 32798378 32798409 -115985063 + (CA)n Simple_repeat Simple_repeat 1 31 0 258 298 78 120 chr11 32798409 32798444 -115985028 + L2 LINE L2 2928 2963 -309 2156 128 128 10 chr11 32798444 32798827 -115984645 + MSTA LTR MaLR 1 428 0 258 298 78 120 chr11 32798827 32799100 -115984372 + L2 LINE L2 2963 3223 -49 269 133 22 0 chr11 32799828 32799873 -115983599 - L2 LINE L2 -19 3294 3249 414 338 125 40 chr11 32800054 32800350 -115983122 - L2 LINE L2 -6 3266 2946 203 271 114 14 chr11 32800389 32800459 -115983013 - MIR SINE MIR -75 187 111 1589 191 72 6 chr11 32800562 32800924 -115982548 - MER58D DNA MER1_type 0 386 1 1103 178 91 0 chr11 32800947 32801200 -115982272 - MER33 DNA MER1_type 0 324 49 312 295 36 18 chr11 32801267 32801379 -115982093 - Charlie8 DNA MER1_type -2160 257 144 1306 163 130 43 chr11 32801616 32801892 -115981580 + AluJo SINE Alu 1 300 -12 375 181 0 0 chr11 32801892 32801964 -115981508 + (TA)n Simple_repeat Simple_repeat 1 72 0 1938 170 24 19 chr11 32801965 32802388 -115981084 + L1MB3 LINE L1 5757 6181 -2 1785 141 17 47 chr11 32802420 32802609 -115980863 - L1MA8 LINE L1 -1 6290 6097 189 74 0 0 chr11 32802609 32802636 -115980836 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2423 50 0 30 chr11 32802636 32802935 -115980537 - AluY SINE Alu -21 290 1 1785 141 17 47 chr11 32802935 32803105 -115980367 - L1MA8 LINE L1 -192 6099 5941 231 198 27 63 chr11 32803466 32803577 -115979895 + A-rich Low_complexity Low_complexity 5 111 0 267 316 13 0 chr11 32807630 32807709 -115975763 - MER119 DNA MER1_type -499 84 5 552 184 87 0 chr11 32808696 32808799 -115974673 + Tigger3(Golem) DNA MER2_type 2 113 -2916 * 4690 105 57 20 chr11 32808796 32809599 -115973873 + Tigger3(Golem) DNA MER2_type 2069 2901 -128 573 244 18 83 chr11 32809651 32809851 -115973621 - L1MC/D LINE L1 -743 5403 5389 1701 155 72 11 chr11 32809851 32810129 -115973343 - AluJo SINE Alu -17 295 1 573 244 18 83 chr11 32810129 32810284 -115973188 - L1MC/D LINE L1 -757 5389 5226 916 204 14 24 chr11 32810920 32811131 -115972341 + L1MC3 LINE L1 6100 6308 -1477 222 235 20 0 chr11 32811154 32811205 -115972267 + GA-rich Low_complexity Low_complexity 2 53 0 456 275 8 15 chr11 32812272 32812403 -115971069 - MER5B DNA MER1_type -3 175 46 205 381 17 17 chr11 32812915 32813033 -115970439 + L2 LINE L2 3160 3277 -36 593 291 41 57 chr11 32813129 32813373 -115970099 + MIR SINE MIR 19 258 -4 22 0 0 0 chr11 32813375 32813397 -115970075 + AT_rich Low_complexity Low_complexity 1 22 0 2867 95 10 0 chr11 32813461 32813886 -115969586 + L1PA8A LINE L1 5701 6166 -6 349 250 234 0 chr11 32814146 32814270 -115969202 - L2 LINE L2 0 3313 3161 204 338 15 0 chr11 32814660 32814728 -115968744 - L2 LINE L2 -666 2648 2580 2230 88 7 0 chr11 32815330 32815646 -115967826 - AluSp SINE Alu 0 318 1 1006 260 5 0 chr11 32815734 32815957 -115967515 - MER58A DNA MER1_type 0 224 1 478 259 91 28 chr11 32815963 32816106 -115967366 - MLT1I LTR MaLR -66 343 192 29 0 0 0 chr11 32816673 32816702 -115966770 + AT_rich Low_complexity Low_complexity 1 29 0 2324 171 26 9 chr11 32816994 32817421 -115966051 - Tigger2a DNA MER2_type 0 434 1 202 254 16 16 chr11 32817500 32817563 -115965909 - MIR3 SINE MIR -5 203 141 24 53 0 0 chr11 32817665 32817703 -115965769 + AT_rich Low_complexity Low_complexity 1 38 0 300 70 0 0 chr11 32818247 32818290 -115965182 + (CA)n Simple_repeat Simple_repeat 1 43 0 7080 179 112 23 chr11 32818413 32819836 -115963636 + MER52A LTR ERV1 1 1550 -205 5255 239 22 25 chr11 32820232 32822667 -115960805 + L1MA6 LINE L1 2055 4173 -3392 3432 165 34 30 chr11 32822668 32823212 -115960260 + L1MA6 LINE L1 6168 6708 -1011 2214 118 0 0 chr11 32823212 32823509 -115959963 - AluSg SINE Alu -13 297 1 3432 165 34 30 chr11 32823509 32824181 -115959291 + L1MA6 LINE L1 6708 7403 -316 2640 146 29 12 chr11 32824172 32824652 -115958820 + L1M2 LINE L1 4924 5411 -2154 * 1283 189 11 23 chr11 32824653 32824918 -115958554 + L1MA6 LINE L1 7412 7673 -46 * 12233 145 59 118 chr11 32824917 32827112 -115956360 + L1PA7 LINE L1 2 2327 -3819 212 0 36 0 chr11 32827112 32827140 -115956332 + (CAA)n Simple_repeat Simple_repeat 2 30 0 12233 145 59 118 chr11 32827140 32828018 -115955454 + L1PA7 LINE L1 2327 2890 -3256 8273 76 16 0 chr11 32828018 32829938 -115953534 + L1PA7 LINE L1 4205 6152 -2 12233 145 59 118 chr11 32829938 32829969 -115953503 + L1PA7 LINE L1 2890 2921 -3225 768 297 84 16 chr11 32830488 32830918 -115952554 + L2 LINE L2 2593 3060 -253 437 180 169 0 chr11 32831658 32831747 -115951725 + L2 LINE L2 3208 3311 -2 318 297 10 40 chr11 32831819 32831920 -115951552 + L2 LINE L2 3175 3272 0 499 242 83 0 chr11 32832518 32832638 -115950834 - FLAM_A SINE Alu -2 131 2 247 279 115 49 chr11 32832641 32832763 -115950709 - MIR SINE MIR -64 198 69 348 216 93 103 chr11 32832867 32833061 -115950411 - L2 LINE L2 0 3313 3122 1817 214 0 14 chr11 32833320 32833690 -115949782 + MLT1A1 LTR MaLR 1 365 0 2221 185 66 27 chr11 32833977 32834463 -115949009 - MLT1D LTR MaLR 0 505 1 474 288 73 6 chr11 32834700 32834877 -115948595 - MIR SINE MIR -26 236 48 534 298 174 20 chr11 32834993 32835389 -115948083 - L1MC/D LINE L1 -2038 5770 5314 1674 129 32 110 chr11 32835427 32835799 -115947673 + MER2 DNA MER2_type 1 343 -1 351 328 140 9 chr11 32836508 32836737 -115946735 + L2 LINE L2 2391 2649 -665 243 352 52 48 chr11 32836881 32837111 -115946361 + L2 LINE L2 2823 3053 -219 2741 193 16 39 chr11 32837249 32837814 -115945658 + MLT2B3 LTR ERVL 3 554 0 1196 184 5 5 chr11 32837839 32838046 -115945426 + MER46A DNA MER2_type 1 207 -29 1026 249 140 10 chr11 32838892 32839386 -115944086 - L1ME4a LINE L1 -1 6120 5563 355 288 125 27 chr11 32839726 32839910 -115943562 + MIR3 SINE MIR 6 207 -1 419 256 130 70 chr11 32840070 32840371 -115943101 + L2 LINE L2 2995 3313 0 2760 226 69 30 chr11 32840760 32841518 -115941954 - MER21B LTR ERV1 -58 805 19 451 162 27 0 chr11 32841544 32841618 -115941854 - MER21B LTR ERV1 -773 90 15 358 285 151 12 chr11 32841975 32842147 -115941325 - MIR SINE MIR -65 197 2 325 306 116 7 chr11 32842362 32842509 -115940963 + MIR SINE MIR 50 212 -50 22 35 0 0 chr11 32842919 32842948 -115940524 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 32845149 32845175 -115938297 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr11 32845337 32845375 -115938097 + AT_rich Low_complexity Low_complexity 1 38 0 263 333 137 0 chr11 32845574 32845691 -115937781 + L2 LINE L2 3181 3313 0 41 48 0 0 chr11 32845776 32845838 -115937634 + AT_rich Low_complexity Low_complexity 1 62 0 1738 176 0 26 chr11 32846800 32847107 -115936365 + AluJb SINE Alu 2 300 -12 272 242 22 11 chr11 32848316 32848407 -115935065 + L1M4 LINE L1 4080 4171 -1975 594 225 70 7 chr11 32848561 32848703 -115934769 + MER63A DNA MER1_type 60 210 0 302 246 36 22 chr11 32848708 32848846 -115934626 + L1M4 LINE L1 2956 3095 -3051 2072 119 3 0 chr11 32849068 32849370 -115934102 + AluSx SINE Alu 10 312 0 848 230 125 10 chr11 32849679 32849879 -115933593 + MER58A DNA MER1_type 2 224 0 900 151 38 16 chr11 32850244 32850429 -115933043 + MER53 DNA DNA 1 189 0 267 106 0 0 chr11 32850454 32850501 -115932971 + L1MA3 LINE L1 6259 6305 0 516 261 195 8 chr11 32850636 32850877 -115932595 + L1MC4 LINE L1 7206 7491 -551 2028 112 0 10 chr11 32850928 32851233 -115932239 - AluSg SINE Alu -8 302 1 652 226 107 29 chr11 32851239 32851482 -115931990 + Charlie4 DNA MER1_type 1 262 -1699 679 229 35 6 chr11 32851612 32851782 -115931690 + MIR SINE MIR 88 262 0 24 32 0 0 chr11 32851804 32851835 -115931637 + AT_rich Low_complexity Low_complexity 1 31 0 2277 291 181 19 chr11 32851985 32853586 -115929886 + L2 LINE L2 1414 3295 -18 2389 97 0 0 chr11 32854949 32855259 -115928213 + AluSg SINE Alu 1 310 0 331 229 236 14 chr11 32855284 32855428 -115928044 - MIR SINE MIR -31 231 56 2439 67 0 3 chr11 32856319 32856617 -115926855 + AluY SINE Alu 1 297 -14 21 57 0 0 chr11 32856670 32856705 -115926767 + AT_rich Low_complexity Low_complexity 1 35 0 328 294 112 42 chr11 32856981 32857425 -115926047 + L1MC/D LINE L1 5270 5758 -363 558 0 0 0 chr11 32857619 32857681 -115925791 + (TC)n Simple_repeat Simple_repeat 2 63 0 2279 99 0 10 chr11 32857955 32858259 -115925213 + AluSg SINE Alu 1 301 -9 207 286 0 0 chr11 32858416 32858465 -115925007 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 35 0 0 0 chr11 32859449 32859484 -115923988 + AT_rich Low_complexity Low_complexity 1 35 0 724 167 0 8 chr11 32859677 32859809 -115923663 + FLAM_A SINE Alu 6 136 -6 2256 92 3 3 chr11 32860037 32860330 -115923142 + AluSc SINE Alu 1 293 -16 194 254 85 0 chr11 32861378 32861437 -115922035 + L2 LINE L2 2667 2730 -584 198 118 0 0 chr11 32863616 32863650 -115919822 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr11 32863696 32863740 -115919732 + AT_rich Low_complexity Low_complexity 1 44 0 638 258 44 81 chr11 32864259 32864530 -115918942 - MIR SINE MIR 0 262 2 487 237 182 36 chr11 32864876 32865129 -115918343 + MARNA DNA Mariner 288 577 -9 1401 236 25 19 chr11 32865251 32865616 -115917856 - MLT1A2 LTR MaLR -4 370 4 4003 198 179 27 chr11 32865639 32866578 -115916894 - MLT1A2-int LTR MaLR -24 1347 156 2074 136 3 3 chr11 32866578 32866887 -115916585 - AluSx SINE Alu -3 309 1 4003 198 179 27 chr11 32866887 32867067 -115916405 - MLT1A2-int LTR MaLR -1215 156 5 1270 251 29 42 chr11 32867071 32867450 -115916022 - MLT1A2 LTR MaLR 0 374 1 237 108 0 0 chr11 32867844 32867881 -115915591 + (TATG)n Simple_repeat Simple_repeat 1 37 0 658 275 85 64 chr11 32867882 32868318 -115915154 + L1ME3A LINE L1 5504 5948 -222 280 250 14 0 chr11 32868318 32868390 -115915082 + (TA)n Simple_repeat Simple_repeat 2 74 0 2568 75 8 22 chr11 32868390 32868750 -115914722 + THE1A LTR MaLR 1 355 0 219 114 0 0 chr11 32868752 32868787 -115914685 + (TA)n Simple_repeat Simple_repeat 1 35 0 5944 97 6 18 chr11 32868787 32870050 -115913422 + L1PB2 LINE L1 4892 6148 -3 282 196 33 0 chr11 32870063 32870155 -115913317 + (TA)n Simple_repeat Simple_repeat 1 95 0 207 191 0 0 chr11 32870216 32870279 -115913193 + (TA)n Simple_repeat Simple_repeat 2 64 0 2955 262 115 25 chr11 32870764 32871659 -115911813 + L1MEc LINE L1 1137 1950 -4265 2108 176 73 2 chr11 32871659 32872057 -115911415 - MSTB LTR MaLR 0 426 1 2955 262 115 25 chr11 32872057 32873389 -115910083 + L1MEc LINE L1 1950 3538 -2677 1034 124 118 11 chr11 32873391 32873577 -115909895 + L1PA16 LINE L1 5952 6157 -9 1228 253 44 52 chr11 32873596 32874078 -115909394 + L1MEc LINE L1 3524 4001 -2214 2721 183 40 5 chr11 32874198 32874767 -115908705 + L1 LINE L1 3791 4379 -1767 411 170 21 11 chr11 32874767 32874855 -115908617 + L1MB2 LINE L1 6075 6169 -2 192 125 0 0 chr11 32874879 32874911 -115908561 + (A)n Simple_repeat Simple_repeat 1 32 0 1000 178 31 97 chr11 32875233 32875481 -115907991 - Charlie2 DNA MER1_type -45 2817 2593 1650 151 4 14 chr11 32875481 32875759 -115907713 - AluJo SINE Alu -9 303 29 1000 178 31 97 chr11 32875759 32875831 -115907641 - Charlie2 DNA MER1_type -269 2593 2518 999 236 64 22 chr11 32875802 32876175 -115907297 - Charlie2 DNA MER1_type -2427 435 13 * 190 323 71 24 chr11 32877169 32877296 -115906176 + MIR3 SINE MIR 43 175 -33 * 236 269 0 0 chr11 32877281 32877333 -115906139 - MIR SINE MIR -1 261 210 1939 100 7 7 chr11 32877340 32877610 -115905862 + AluSx SINE Alu 11 280 -32 1807 113 0 92 chr11 32879399 32879727 -115903745 - MER4A LTR ERV1 0 664 367 1992 101 49 11 chr11 32879849 32880136 -115903336 + AluSg SINE Alu 1 298 -12 2159 143 11 21 chr11 32880517 32880896 -115902576 + THE1C LTR MaLR 1 375 0 1243 102 30 5 chr11 32880896 32881093 -115902379 + THE1C-int LTR MaLR 1 202 -1378 277 239 177 35 chr11 32881244 32881357 -115902115 + L2 LINE L2 3178 3306 -7 312 91 0 0 chr11 32881375 32881419 -115902053 + (GCTG)n Simple_repeat Simple_repeat 2 45 0 1330 195 78 67 chr11 32881687 32882138 -115901334 - LTR16A1 LTR ERVL -1 456 1 1582 163 77 25 chr11 32882149 32882475 -115900997 - MER2 DNA MER2_type -1 343 1 240 320 90 16 chr11 32882493 32882615 -115900857 + L2 LINE L2 2728 2858 -456 906 134 0 32 chr11 32882624 32882810 -115900662 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 193 272 79 50 chr11 32882847 32882912 -115900560 + L2 LINE L2 2818 2880 -433 2129 76 0 11 chr11 32882912 32883188 -115900284 - AluSq SINE Alu -36 277 5 193 272 79 50 chr11 32883188 32883324 -115900148 + L2 LINE L2 2880 3025 -288 181 281 211 44 chr11 32883335 32883449 -115900023 + L2 LINE L2 3138 3270 -2 876 255 75 0 chr11 32883633 32883845 -115899627 + MIR SINE MIR 8 235 -27 458 215 188 13 chr11 32883897 32884046 -115899426 + MER96 DNA MER1_type? 1 175 0 704 219 57 10 chr11 32884076 32884274 -115899198 + LTR33A LTR ERVL 309 520 -3 237 336 211 19 chr11 32884338 32884546 -115898926 - MIR SINE MIR -6 256 9 2583 164 33 14 chr11 32884713 32885224 -115898248 - L1MB5 LINE L1 -8 6166 5646 850 239 58 5 chr11 32887592 32887797 -115895675 + MIR SINE MIR 37 252 -10 268 396 53 27 chr11 32888089 32888276 -115895196 + L3b LINE CR1 1384 1575 -8 1607 164 26 3 chr11 32888508 32888813 -115894659 + L1 LINE L1 4068 4379 -1767 411 170 21 11 chr11 32888813 32888901 -115894571 + L1MB2 LINE L1 6075 6169 -2 192 125 0 0 chr11 32888925 32888957 -115894515 + (A)n Simple_repeat Simple_repeat 1 32 0 881 190 37 33 chr11 32889279 32889521 -115893951 - Charlie2 DNA MER1_type -45 2817 2575 1650 151 4 14 chr11 32889527 32889805 -115893667 - AluJo SINE Alu -9 303 29 1131 236 156 21 chr11 32889848 32890221 -115893251 - Charlie2 DNA MER1_type -2427 435 13 181 319 74 25 chr11 32890990 32891153 -115892319 + L2 LINE L2 1790 1960 -1354 190 323 71 24 chr11 32891216 32891343 -115892129 + MIR3 SINE MIR 43 175 -33 * 450 229 49 69 chr11 32891328 32891387 -115892085 - MIR SINE MIR -1 261 202 2137 109 3 0 chr11 32891387 32891672 -115891800 + AluSx SINE Alu 11 296 -16 450 229 49 69 chr11 32891672 32891756 -115891716 - MIR SINE MIR -60 202 121 237 320 67 0 chr11 32891727 32891802 -115891670 + MIR3 SINE MIR 124 203 -5 * 192 293 66 78 chr11 32891858 32892025 -115891447 + L2 LINE L2 3127 3291 -22 493 120 0 0 chr11 32892452 32892527 -115890945 + Charlie5 DNA MER1_type 33 107 -2505 25 51 0 0 chr11 32894146 32894185 -115889287 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr11 32894334 32894365 -115889107 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr11 32898337 32898367 -115885105 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 32898658 32898683 -115884789 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr11 32899970 32900006 -115883466 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr11 32901689 32901738 -115881734 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr11 32902699 32902722 -115880750 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr11 32902777 32902814 -115880658 + AT_rich Low_complexity Low_complexity 1 37 0 272 318 32 40 chr11 32903627 32903753 -115879719 + L2 LINE L2 2968 3092 -180 187 254 0 90 chr11 32907030 32907097 -115876375 + MIR SINE MIR 101 161 -101 340 281 91 16 chr11 32908397 32908518 -115874954 + L3 LINE CR1 214 343 -1234 291 54 0 0 chr11 32908956 32908993 -115874479 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr11 32908993 32909016 -115874456 + (TA)n Simple_repeat Simple_repeat 1 23 0 2326 92 0 0 chr11 32909329 32909623 -115873849 - AluSc SINE Alu -15 294 1 302 282 73 36 chr11 32909651 32909761 -115873711 - L2 LINE L2 -32 3281 3168 986 251 119 25 chr11 32909839 32910166 -115873306 + MLT2D LTR ERVL 1 358 -56 264 77 0 0 chr11 32910168 32910207 -115873265 + (GA)n Simple_repeat Simple_repeat 2 40 0 304 322 87 33 chr11 32910291 32910533 -115872939 - L2 LINE L2 -214 3058 2804 1192 321 157 13 chr11 32910702 32911331 -115872141 + L3 LINE CR1 570 1289 -288 469 283 329 13 chr11 32911465 32911839 -115871633 + L3 LINE CR1 1072 1563 -14 22 35 0 0 chr11 32912160 32912189 -115871283 + AT_rich Low_complexity Low_complexity 1 29 0 697 67 0 0 chr11 32912242 32912332 -115871140 - AluY SINE Alu -12 299 210 640 225 51 0 chr11 32912536 32912674 -115870798 + MLT1F1 LTR MaLR 422 566 -1 244 225 70 14 chr11 32912881 32912952 -115870520 + MLT1I LTR MaLR 286 360 -49 543 220 240 15 chr11 32913459 32913659 -115869813 - MLT1H LTR MaLR -19 530 286 4525 178 25 22 chr11 32913673 32914359 -115869113 - L1MB5 LINE L1 -8 6166 5484 198 71 0 0 chr11 32914359 32914387 -115869085 + (TG)n Simple_repeat Simple_repeat 1 28 0 4525 178 25 22 chr11 32914387 32915152 -115868320 - L1MB5 LINE L1 -690 5484 4714 471 257 37 86 chr11 32915169 32915356 -115868116 - MER21B LTR ERV1 -196 667 490 21 0 0 0 chr11 32915630 32915651 -115867821 + AT_rich Low_complexity Low_complexity 1 21 0 408 40 0 0 chr11 32916579 32916629 -115866843 + (CA)n Simple_repeat Simple_repeat 2 51 0 2175 96 0 7 chr11 32917958 32918251 -115865221 + AluSq SINE Alu 5 295 -18 882 224 98 5 chr11 32918317 32918522 -115864950 - MIR SINE MIR -24 238 15 1302 211 88 6 chr11 32920303 32920621 -115862851 - MER2 DNA MER2_type -1 344 1 1702 156 20 23 chr11 32920869 32921170 -115862302 + AluJo SINE Alu 1 300 -12 289 320 80 0 chr11 32922995 32923120 -115860352 - L2 LINE L2 -1 3271 3137 189 147 0 0 chr11 32923316 32923350 -115860122 + (GA)n Simple_repeat Simple_repeat 1 34 0 807 263 120 0 chr11 32923354 32923563 -115859909 + MIR SINE MIR 8 241 -21 621 215 40 118 chr11 32923672 32923900 -115859572 - MER63A DNA MER1_type 0 210 1 21 57 0 0 chr11 32924119 32924154 -115859318 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 32924495 32924518 -115858954 + AT_rich Low_complexity Low_complexity 1 23 0 340 275 130 25 chr11 32924558 32924834 -115858638 + L1ME4a LINE L1 5799 6103 -18 2214 101 0 3 chr11 32926079 32926377 -115857095 - AluSp SINE Alu -16 297 1 27 0 0 0 chr11 32927198 32927225 -115856247 + AT_rich Low_complexity Low_complexity 1 27 0 3763 91 18 9 chr11 32927254 32927806 -115855666 - L1PA16 LINE L1 -156 6010 5454 1693 179 3 13 chr11 32928271 32928572 -115854900 - AluJb SINE Alu -14 298 1 1365 245 28 3 chr11 32929007 32929330 -115854142 + MER58B DNA MER1_type 2 332 -9 361 326 144 33 chr11 32929336 32929551 -115853921 + L2 LINE L2 189 427 -2887 1128 343 82 21 chr11 32929738 32930539 -115852933 + L2 LINE L2 1104 1953 -1361 2050 117 46 57 chr11 32930549 32930767 -115852705 - THE1B LTR MaLR 0 364 150 2164 108 0 3 chr11 32930767 32931063 -115852409 + AluSg SINE Alu 1 295 -15 2050 117 46 57 chr11 32931063 32931212 -115852260 - THE1B LTR MaLR -214 150 1 9280 99 138 4 chr11 32931227 32932616 -115850856 - THE1B-int LTR MaLR -5 1575 1 2107 111 63 23 chr11 32932616 32932966 -115850506 - THE1B LTR MaLR 0 364 1 350 239 150 0 chr11 32933176 32933289 -115850183 - L2 LINE L2 0 3313 3184 2107 136 0 0 chr11 32933601 32933896 -115849576 - AluSg SINE Alu -12 298 4 376 237 140 0 chr11 32933919 32934033 -115849439 + L2 LINE L2 3184 3313 0 530 221 73 135 chr11 32934261 32934408 -115849064 + MLT1L LTR MaLR 1 123 -492 2009 91 4 0 chr11 32934408 32934671 -115848801 - AluSp SINE Alu -16 297 34 530 221 73 135 chr11 32934671 32934812 -115848660 + MLT1L LTR MaLR 123 271 -344 271 247 196 0 chr11 32934957 32935054 -115848418 + MLT1L LTR MaLR 498 613 -2 230 282 43 37 chr11 32935862 32935880 -115847592 - L1MA10 LINE L1 -2 6332 6315 2685 227 82 60 chr11 32935880 32937213 -115846259 - L1ME2 LINE L1 -10 6223 4842 3037 138 0 8 chr11 32937213 32937713 -115845759 + L1MA8 LINE L1 5793 6288 -3 2685 227 82 60 chr11 32937713 32938140 -115845332 - L1ME2 LINE L1 -1391 4842 4426 3552 60 15 6 chr11 32938328 32938795 -115844677 + L1PA7 LINE L1 5678 6148 -6 2379 263 82 18 chr11 32939953 32940476 -115842996 - L1ME2 LINE L1 -1778 4437 3830 1969 134 45 31 chr11 32940476 32940835 -115842637 + THE1B LTR MaLR 1 364 0 2379 263 82 18 chr11 32940835 32941208 -115842264 - L1ME2 LINE L1 -2385 3830 3483 312 119 60 60 chr11 32941208 32941275 -115842197 - MLT2A2 LTR ERVL 0 453 387 27 49 0 0 chr11 32941314 32941355 -115842117 + AT_rich Low_complexity Low_complexity 1 41 0 424 294 7 0 chr11 32941426 32941562 -115841910 - L1ME2 LINE L1 -3320 2895 2759 1691 262 68 58 chr11 32941564 32942493 -115840979 - L1ME2 LINE L1 -4619 1777 840 296 368 75 10 chr11 32942651 32942852 -115840620 - L1ME2 LINE L1 -5931 465 252 389 335 24 19 chr11 32942879 32943085 -115840387 - L1ME2 LINE L1 -6133 263 57 194 325 193 9 chr11 32943203 32943317 -115840155 + MIR3 SINE MIR 40 174 -34 35 63 0 0 chr11 32943437 32943500 -115839972 + AT_rich Low_complexity Low_complexity 1 63 0 2218 113 0 0 chr11 32943546 32943839 -115839633 - AluSx SINE Alu -19 293 1 702 285 0 16 chr11 32944997 32945183 -115838289 - MER5A DNA MER1_type -6 183 1 235 194 153 40 chr11 32945335 32945459 -115838013 + Charlie7 DNA MER1_type 21 158 -2454 701 282 285 0 chr11 32945485 32945836 -115837636 + HAL1 LINE L1 154 604 -1903 566 305 68 16 chr11 32945848 32946097 -115837375 + HAL1 LINE L1 645 906 -1601 207 25 75 0 chr11 32946114 32946154 -115837318 + A-rich Low_complexity Low_complexity 1 43 0 529 278 128 21 chr11 32946233 32946806 -115836666 + HAL1 LINE L1 1185 1887 -620 23 33 0 0 chr11 32947723 32947753 -115835719 + AT_rich Low_complexity Low_complexity 1 30 0 268 396 53 27 chr11 32948115 32948302 -115835170 - L3b LINE CR1 -8 1575 1384 856 239 58 5 chr11 32948594 32948799 -115834673 - MIR SINE MIR -10 252 37 2571 164 33 14 chr11 32951167 32951678 -115831794 + L1MB5 LINE L1 5646 6166 -8 234 336 211 19 chr11 32951844 32952052 -115831420 + MIR SINE MIR 9 256 -6 713 219 57 10 chr11 32952116 32952314 -115831158 - LTR33A LTR ERVL -3 520 309 468 215 188 13 chr11 32952344 32952493 -115830979 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 32952545 32952757 -115830715 - MIR SINE MIR -27 235 8 187 272 211 44 chr11 32952941 32953055 -115830417 - L2 LINE L2 -2 3270 3138 215 287 79 50 chr11 32953066 32953202 -115830270 - L2 LINE L2 -288 3025 2880 2167 76 0 11 chr11 32953202 32953478 -115829994 + AluSq SINE Alu 5 277 -36 215 287 79 50 chr11 32953478 32953543 -115829929 - L2 LINE L2 -433 2880 2818 888 137 11 22 chr11 32953580 32953762 -115829710 + GA-rich Low_complexity Low_complexity 1 180 0 244 320 90 16 chr11 32953771 32953893 -115829579 - L2 LINE L2 -456 2858 2728 1578 163 77 25 chr11 32953911 32954237 -115829235 + MER2 DNA MER2_type 1 343 -1 1373 195 78 67 chr11 32954248 32954699 -115828773 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 32954967 32955011 -115828461 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 276 239 177 35 chr11 32955029 32955142 -115828330 - L2 LINE L2 -7 3306 3178 1248 102 30 5 chr11 32955293 32955490 -115827982 - THE1C-int LTR MaLR -1378 202 1 2142 142 11 26 chr11 32955490 32955871 -115827601 - THE1C LTR MaLR 0 375 1 2022 101 49 11 chr11 32956252 32956539 -115826933 - AluSg SINE Alu -12 298 1 1793 116 0 92 chr11 32956661 32956989 -115826483 + MER4A LTR ERV1 367 664 0 2259 113 0 0 chr11 32958748 32959050 -115824422 - AluSc SINE Alu -7 302 1 336 234 43 0 chr11 32959050 32959136 -115824336 - MIR SINE MIR -94 168 76 215 271 75 75 chr11 32959372 32959479 -115823993 - MIR SINE MIR -108 154 48 204 125 0 0 chr11 32961964 32961996 -115821476 + L2 LINE L2 3272 3303 -10 313 211 18 0 chr11 32962101 32962158 -115821314 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 32965573 32965597 -115817875 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 32965723 32965771 -115817701 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 32965975 32965996 -115817476 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 32966386 32966415 -115817057 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 738 322 13 9 chr11 32966884 32967117 -115816355 - MIR SINE MIR -27 235 2 507 245 39 0 chr11 32967411 32967513 -115815959 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 32967649 32967677 -115815795 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr11 32968032 32968072 -115815400 + (TG)n Simple_repeat Simple_repeat 1 40 0 226 322 78 26 chr11 32968855 32968970 -115814502 + MLT1K LTR MaLR 3 123 -465 25 0 0 0 chr11 32969004 32969029 -115814443 + AT_rich Low_complexity Low_complexity 1 25 0 2177 100 36 3 chr11 32969197 32969498 -115813974 - AluY SINE Alu 0 311 1 503 216 144 0 chr11 32971124 32971249 -115812223 - MIR SINE MIR -2 260 118 2272 172 50 23 chr11 32971284 32971721 -115811751 + MLT2B1 LTR ERVL 1 449 -71 810 142 8 15 chr11 32971764 32971898 -115811574 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 32971909 32971964 -115811508 + AT_rich Low_complexity Low_complexity 1 55 0 258 62 0 0 chr11 32971964 32971996 -115811476 + MLT2B1 LTR ERVL 425 456 -8 275 290 36 21 chr11 32972000 32972193 -115811279 - L1MEc LINE L1 -4178 2218 2023 280 281 24 12 chr11 32972320 32972402 -115811070 - L1MEc LINE L1 -5767 438 356 24 53 0 0 chr11 32972422 32972460 -115811012 + AT_rich Low_complexity Low_complexity 1 38 0 265 396 53 27 chr11 33022789 33022976 -115760496 - L3b LINE CR1 -8 1575 1384 860 239 58 5 chr11 33023268 33023473 -115759999 - MIR SINE MIR -10 252 37 2571 164 33 14 chr11 33025841 33026352 -115757120 + L1MB5 LINE L1 5646 6166 -8 234 336 211 19 chr11 33026519 33026727 -115756745 + MIR SINE MIR 9 256 -6 713 219 57 10 chr11 33026791 33026989 -115756483 - LTR33A LTR ERVL -3 520 309 468 215 188 13 chr11 33027019 33027168 -115756304 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 33027220 33027432 -115756040 - MIR SINE MIR -27 235 8 187 272 211 44 chr11 33027616 33027730 -115755742 - L2 LINE L2 -2 3270 3138 215 287 79 50 chr11 33027741 33027877 -115755595 - L2 LINE L2 -288 3025 2880 2142 80 0 11 chr11 33027877 33028153 -115755319 + AluSq SINE Alu 5 277 -36 215 287 79 50 chr11 33028153 33028218 -115755254 - L2 LINE L2 -433 2880 2818 212 175 25 0 chr11 33028218 33028258 -115755214 + GA-rich Low_complexity Low_complexity 1 41 0 906 134 0 32 chr11 33028259 33028445 -115755027 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 244 320 90 16 chr11 33028454 33028576 -115754896 - L2 LINE L2 -456 2858 2728 1578 163 77 25 chr11 33028594 33028920 -115754552 + MER2 DNA MER2_type 1 343 -1 1373 195 78 67 chr11 33028931 33029382 -115754090 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 33029650 33029694 -115753778 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 276 239 177 35 chr11 33029712 33029825 -115753647 - L2 LINE L2 -7 3306 3178 1248 102 30 5 chr11 33029976 33030173 -115753299 - THE1C-int LTR MaLR -1378 202 1 2163 145 11 21 chr11 33030173 33030552 -115752920 - THE1C LTR MaLR 0 375 1 2007 104 49 11 chr11 33030933 33031220 -115752252 - AluSg SINE Alu -12 298 1 1815 113 0 92 chr11 33031342 33031670 -115751802 + MER4A LTR ERV1 367 664 0 2259 113 0 0 chr11 33033429 33033731 -115749741 - AluSc SINE Alu -7 302 1 336 234 43 0 chr11 33033731 33033817 -115749655 - MIR SINE MIR -94 168 76 215 271 75 75 chr11 33034053 33034160 -115749312 - MIR SINE MIR -108 154 48 204 125 0 0 chr11 33036646 33036678 -115746794 + L2 LINE L2 3272 3303 -10 313 211 18 0 chr11 33036783 33036840 -115746632 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 33040255 33040279 -115743193 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 33040405 33040453 -115743019 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 33040657 33040678 -115742794 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 33041068 33041097 -115742375 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 738 322 13 9 chr11 33041566 33041799 -115741673 - MIR SINE MIR -27 235 2 507 245 39 0 chr11 33042093 33042195 -115741277 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 33042331 33042359 -115741113 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr11 33042714 33042752 -115740720 + (TG)n Simple_repeat Simple_repeat 1 38 0 226 322 78 26 chr11 33043535 33043650 -115739822 + MLT1K LTR MaLR 3 123 -465 25 0 0 0 chr11 33043684 33043709 -115739763 + AT_rich Low_complexity Low_complexity 1 25 0 2162 100 37 3 chr11 33043884 33044183 -115739289 - AluY SINE Alu -2 309 1 503 216 144 0 chr11 33045809 33045934 -115737538 - MIR SINE MIR -2 260 118 2283 169 50 23 chr11 33045969 33046406 -115737066 + MLT2B1 LTR ERVL 1 449 -71 810 142 8 15 chr11 33046449 33046583 -115736889 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 33046594 33046649 -115736823 + AT_rich Low_complexity Low_complexity 1 55 0 258 62 0 0 chr11 33046649 33046681 -115736791 + MLT2B1 LTR ERVL 476 507 -8 275 290 36 21 chr11 33046685 33046878 -115736594 - L1MEc LINE L1 -4178 2218 2023 280 281 24 12 chr11 33047005 33047087 -115736385 - L1MEc LINE L1 -5767 438 356 24 53 0 0 chr11 33047107 33047145 -115736327 + AT_rich Low_complexity Low_complexity 1 38 0 201 94 0 0 chr11 33047372 33047404 -115736068 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 1403 187 4 16 chr11 33047949 33048200 -115735272 - MLT1E1 LTR MaLR -2 652 405 906 189 0 6 chr11 33048276 33048440 -115735032 - MLT1E1 LTR MaLR -402 252 90 2384 64 0 58 chr11 33048882 33049211 -115734261 - AluY SINE Alu -1 310 1 30376 29 15 1 chr11 33049230 33055256 -115728216 - L1HS LINE L1 0 6155 2 22 0 0 0 chr11 33055322 33055344 -115728128 + AT_rich Low_complexity Low_complexity 1 22 0 1398 246 103 13 chr11 33056008 33056456 -115727016 + MLT1L LTR MaLR 121 608 -7 22 35 0 0 chr11 33058040 33058069 -115725403 + AT_rich Low_complexity Low_complexity 1 29 0 523 250 0 112 chr11 33060625 33060739 -115722733 + MIR SINE MIR 68 193 -69 189 0 0 0 chr11 33060739 33060760 -115722712 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2252 85 0 3 chr11 33060762 33061045 -115722427 - AluSp SINE Alu -31 282 1 523 250 0 112 chr11 33061045 33061123 -115722349 + MIR SINE MIR 194 241 -21 2147 113 0 7 chr11 33061313 33061605 -115721867 - AluSx SINE Alu -22 290 1 2275 74 0 46 chr11 33062092 33062415 -115721057 + AluY SINE Alu 1 308 -3 261 0 0 0 chr11 33062521 33062550 -115720922 + (T)n Simple_repeat Simple_repeat 1 29 0 647 229 22 49 chr11 33062784 33062967 -115720505 + MLT1K LTR MaLR 377 554 -34 38185 83 8 7 chr11 33062970 33069110 -115714362 - L1PA6 LINE L1 -1 6153 11 519 145 0 13 chr11 33069236 33069312 -115714160 - Charlie3 DNA MER1_type -8 2702 2628 863 286 91 48 chr11 33069569 33070138 -115713334 - L2 LINE L2 -45 3268 2670 931 251 57 22 chr11 33070219 33070679 -115712793 + MLT1J LTR MaLR 1 501 -10 1609 180 29 0 chr11 33070962 33071234 -115712238 + AluJo SINE Alu 1 280 -32 252 0 0 0 chr11 33071234 33071262 -115712210 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 628 268 131 77 chr11 33072091 33072461 -115711011 + MLT1J LTR MaLR 1 442 -69 795 161 37 50 chr11 33072754 33073052 -115710420 + MLT1A1 LTR MaLR 1 365 0 423 296 19 0 chr11 33073150 33073258 -115710214 + L2 LINE L2 3200 3309 -4 189 102 0 61 chr11 33073911 33073960 -115709512 + (GGAGA)n Simple_repeat Simple_repeat 2 47 0 1796 183 17 40 chr11 33074056 33074456 -115709016 + MLT2D LTR ERVL 1 490 -30 513 0 0 0 chr11 33074958 33075015 -115708457 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1417 167 22 97 chr11 33075015 33075386 -115708086 - MER7A DNA MER2_type -4 342 2 297 0 0 0 chr11 33075388 33075421 -115708051 + (CA)n Simple_repeat Simple_repeat 2 34 0 249 57 29 0 chr11 33075427 33075462 -115708010 + MLT2D LTR ERVL 379 414 0 467 277 139 12 chr11 33075894 33076060 -115707412 + MIR SINE MIR 65 251 -11 1139 200 0 28 chr11 33076559 33076774 -115706698 + AluJo SINE Alu 1 209 -103 648 171 9 9 chr11 33076780 33076891 -115706581 + FRAM SINE Alu 34 144 -32 2243 117 0 0 chr11 33076891 33077182 -115706290 - AluSp SINE Alu -22 291 1 2002 134 0 3 chr11 33077212 33077536 -115705936 + AluSx SINE Alu 1 323 0 899 176 18 0 chr11 33078009 33078174 -115705298 + MIR SINE MIR 12 179 -83 421 267 0 19 chr11 33078267 33078372 -115705100 + Charlie2 DNA MER1_type 46 148 -2634 738 203 154 45 chr11 33078588 33078899 -115704573 + Charlie2 DNA MER1_type 2274 2618 -244 562 236 60 107 chr11 33079090 33079475 -115703997 + L1MC5 LINE L1 6844 7210 -751 295 229 101 46 chr11 33079639 33079748 -115703724 + L1MC5 LINE L1 7276 7390 -571 386 266 93 66 chr11 33079752 33079804 -115703668 + L1MC5 LINE L1 7474 7523 -438 2047 76 0 15 chr11 33079804 33080068 -115703404 + AluSg SINE Alu 50 309 -1 386 266 93 66 chr11 33080068 33080455 -115703017 + L1MC5 LINE L1 7523 7925 -36 815 214 68 5 chr11 33080465 33080671 -115702801 + Charlie2 DNA MER1_type 2637 2855 -7 185 290 86 21 chr11 33082950 33083043 -115700429 - L2 LINE L2 0 3272 3174 303 274 18 92 chr11 33083235 33083293 -115700179 - L1ME4a LINE L1 -175 5946 5885 700 187 0 8 chr11 33083293 33083427 -115700045 + FLAM_C SINE Alu 1 133 0 303 274 18 92 chr11 33083427 33083532 -115699940 - L1ME4a LINE L1 -236 5885 5795 344 332 85 27 chr11 33083541 33083800 -115699672 - L1ME4a LINE L1 -387 5734 5461 31 44 0 0 chr11 33083828 33083873 -115699599 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr11 33083911 33083936 -115699536 + AT_rich Low_complexity Low_complexity 1 25 0 180 219 0 0 chr11 33086001 33086042 -115697430 - L2 LINE L2 -78 3194 3154 2415 76 0 0 chr11 33087581 33087883 -115695589 + AluSc SINE Alu 1 302 -7 2206 117 0 3 chr11 33089137 33089444 -115694028 - AluSx SINE Alu -6 306 1 21600 23 6 0 chr11 33089832 33093171 -115690301 + L1PA3 LINE L1 2809 6153 -2 191 230 122 138 chr11 33093203 33093399 -115690073 + MIR3 SINE MIR 2 194 -14 237 353 69 0 chr11 33093511 33093613 -115689859 + MIR SINE MIR 117 225 -37 1727 130 59 25 chr11 33093943 33094265 -115689207 - MER44D DNA MER2_type -6 603 1 2190 103 3 3 chr11 33095065 33095356 -115688116 - AluSx SINE Alu -21 291 1 1981 180 44 15 chr11 33097426 33097832 -115685640 + MER47B DNA MER2_type 1 418 0 288 352 94 8 chr11 33098663 33098791 -115684681 + L2 LINE L2 3134 3272 0 22 0 0 0 chr11 33099564 33099586 -115683886 + AT_rich Low_complexity Low_complexity 1 22 0 774 243 153 0 chr11 33099587 33099809 -115683663 - MIR SINE MIR 0 262 7 2229 176 9 40 chr11 33100217 33100589 -115682883 - LOR1b LTR ERV1 0 461 104 1826 176 0 10 chr11 33100589 33100902 -115682570 + AluJb SINE Alu 1 310 -2 2229 176 9 40 chr11 33100902 33100973 -115682499 - LOR1b LTR ERV1 -357 104 32 884 171 30 0 chr11 33101156 33101320 -115682152 + MER33 DNA MER1_type 1 169 -155 315 274 39 67 chr11 33101494 33101673 -115681799 + L1MC5 LINE L1 7461 7634 -327 261 0 0 0 chr11 33102518 33102547 -115680925 + (CCA)n Simple_repeat Simple_repeat 1 29 0 297 239 168 76 chr11 33102639 33102821 -115680651 + MIR SINE MIR 19 206 -56 326 247 51 10 chr11 33104612 33104774 -115678698 + MIR SINE MIR 15 238 -24 782 149 58 0 chr11 33104775 33104929 -115678543 + MER33 DNA MER1_type 15 177 -147 505 234 68 37 chr11 33104929 33105148 -115678324 - L1MCa LINE L1 -5269 1338 906 236 154 19 0 chr11 33105165 33105217 -115678255 + MER33 DNA MER1_type 150 202 -122 2292 107 3 0 chr11 33105390 33105698 -115677774 - AluSq SINE Alu -4 309 1 229 313 16 0 chr11 33105972 33106036 -115677436 + L3 LINE CR1 1502 1566 -11 474 273 41 16 chr11 33106222 33106343 -115677129 - L1ME LINE L1 -578 5586 5463 503 168 142 9 chr11 33106344 33106457 -115677015 - MER20 DNA MER1_type -2 217 90 4273 234 104 18 chr11 33106508 33108202 -115675270 - L1M2 LINE L1 -730 5448 3624 448 296 41 115 chr11 33108205 33108597 -115674875 - HAL1 LINE L1 -2097 410 48 951 177 0 0 chr11 33108607 33108754 -115674718 + FRAM SINE Alu 1 146 -30 431 299 84 57 chr11 33109045 33109413 -115674059 - L2 LINE L2 -1608 1706 1329 2035 123 35 59 chr11 33109522 33109895 -115673577 + THE1B LTR MaLR 1 364 0 229 342 70 32 chr11 33110068 33110255 -115673217 - MIR SINE MIR -40 222 29 310 303 156 8 chr11 33112020 33112142 -115671330 - MIR SINE MIR -28 234 95 281 206 82 27 chr11 33112579 33112652 -115670820 + MIR3 SINE MIR 115 191 -17 1983 166 3 20 chr11 33112705 33113048 -115670424 + MER1B DNA MER1_type 1 337 0 2207 100 0 39 chr11 33113335 33113645 -115669827 - AluSx SINE Alu -14 298 1 705 212 125 5 chr11 33114243 33114427 -115669045 - L1ME2 LINE L1 -9 6155 5950 2128 123 0 7 chr11 33115151 33115452 -115668020 - AluSx SINE Alu -13 299 1 205 277 0 84 chr11 33115606 33115689 -115667783 - L2 LINE L2 0 3313 3238 589 248 143 11 chr11 33115763 33115974 -115667498 + MIR SINE MIR 5 228 -34 3306 218 69 23 chr11 33116213 33117038 -115666434 - MER21B LTR ERV1 0 863 1 211 320 89 76 chr11 33117829 33118054 -115665418 + L2 LINE L2 3037 3264 -8 21937 147 39 9 chr11 33119318 33123638 -115659834 + L1MA3 LINE L1 11 4458 -3107 3530 182 24 24 chr11 33123622 33123693 -115659779 + L1MA3 LINE L1 4855 4925 -2640 * 2057 129 16 3 chr11 33123693 33123996 -115659476 + AluSx SINE Alu 1 307 -5 2264 106 0 3 chr11 33124001 33124302 -115659170 + AluSc SINE Alu 1 300 -9 3530 182 24 24 chr11 33124302 33124933 -115658539 + L1MA3 LINE L1 4928 5563 -2002 * 6279 114 35 10 chr11 33124929 33125978 -115657494 + L1MA3 LINE L1 6649 7722 -2 505 205 92 76 chr11 33125994 33126179 -115657293 - MER115 DNA AcHobo -1 692 505 569 181 0 0 chr11 33126181 33126275 -115657197 + MLT1A1 LTR MaLR 74 167 -198 931 129 0 0 chr11 33126280 33126412 -115657060 - AluSx SINE Alu -7 305 174 737 140 0 0 chr11 33126412 33126519 -115656953 - AluSx SINE Alu -201 112 6 724 164 242 6 chr11 33126523 33126688 -115656784 + MLT1A1 LTR MaLR 162 365 0 820 215 71 124 chr11 33126967 33127362 -115656110 + MLT1A2 LTR MaLR 1 374 0 24 32 0 0 chr11 33127367 33127398 -115656074 + AT_rich Low_complexity Low_complexity 1 31 0 3300 209 12 5 chr11 33127407 33128048 -115655424 + MER82 DNA MER2_type 7 652 -1 630 291 99 18 chr11 33128196 33128478 -115654994 + L1M4 LINE L1 2906 3210 -2936 3775 119 47 28 chr11 33128505 33129142 -115654330 - L1PA15 LINE L1 -61 6104 5456 23 0 0 0 chr11 33129150 33129173 -115654299 + AT_rich Low_complexity Low_complexity 1 23 0 394 270 52 26 chr11 33129244 33129359 -115654113 - L2 LINE L2 -1 3271 3154 254 361 72 0 chr11 33129367 33129464 -115654008 - MIR SINE MIR -111 151 48 716 319 64 73 chr11 33130200 33130851 -115652621 + L2 LINE L2 2618 3271 -1 2115 118 34 0 chr11 33131377 33131673 -115651799 - AluSg SINE Alu -4 306 1 2281 96 7 0 chr11 33132982 33133283 -115650189 - AluSg SINE Alu -7 303 1 4719 66 5 0 chr11 33133313 33133922 -115649550 - L1PA8 LINE L1 0 6172 5561 5395 94 7 2 chr11 33133923 33134862 -115648610 + L1PA8 LINE L1 4618 5559 -613 182 278 7 20 chr11 33134972 33135123 -115648349 + CT-rich Low_complexity Low_complexity 2 150 0 2830 140 45 25 chr11 33135567 33136082 -115647390 - Tigger3(Golem) DNA MER2_type -1 3028 2504 1521 203 4 7 chr11 33136096 33136377 -115647095 - AluJo SINE Alu -30 282 3 1043 203 11 0 chr11 33136399 33136576 -115646896 - Tigger3(Golem) DNA MER2_type -2848 181 3 351 0 0 0 chr11 33136695 33136734 -115646738 + (TG)n Simple_repeat Simple_repeat 2 40 0 4448 173 18 8 chr11 33136782 33137352 -115646120 - LTR39 LTR ERV1 0 783 201 4103 86 9 2 chr11 33137352 33137902 -115645570 - MER41A LTR ERV1 0 554 1 4448 173 18 8 chr11 33137902 33138106 -115645366 - LTR39 LTR ERV1 -582 201 1 2332 92 10 3 chr11 33138637 33138942 -115644530 - AluSx SINE Alu -5 307 1 22 0 0 0 chr11 33138945 33138967 -115644505 + AT_rich Low_complexity Low_complexity 1 22 0 1258 200 91 62 chr11 33139004 33139056 -115644416 - MSTD LTR MaLR 0 396 347 1221 199 92 15 chr11 33139056 33139328 -115644144 - AluJo SINE Alu -17 295 3 1258 200 91 62 chr11 33139328 33139660 -115643812 - MSTD LTR MaLR -49 347 1 1583 171 8 0 chr11 33141023 33141274 -115642198 + AluJb SINE Alu 48 300 -12 207 0 0 0 chr11 33141274 33141297 -115642175 + (TA)n Simple_repeat Simple_repeat 2 24 0 698 238 87 0 chr11 33141815 33141987 -115641485 - MER5A DNA MER1_type -2 187 1 2021 226 116 42 chr11 33142841 33143445 -115640027 - L1ME2 LINE L1 -24 6140 5477 2082 137 3 10 chr11 33143445 33143759 -115639713 - AluSx SINE Alu 0 312 1 2021 226 116 42 chr11 33143759 33143843 -115639629 - L1ME2 LINE L1 -687 5477 5401 710 240 185 14 chr11 33144683 33144970 -115638502 - L2 LINE L2 -1 3312 2977 1131 238 143 7 chr11 33145277 33145698 -115637774 - L1ME2 LINE L1 -915 5231 4754 1681 209 55 34 chr11 33146194 33146688 -115636784 - MLT1D LTR MaLR -1 504 1 26 0 0 0 chr11 33146965 33146991 -115636481 + AT_rich Low_complexity Low_complexity 1 26 0 2431 69 0 7 chr11 33148150 33148455 -115635017 - AluY SINE Alu -8 303 1 25 31 0 0 chr11 33149147 33149179 -115634293 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 33150056 33150092 -115633380 + AT_rich Low_complexity Low_complexity 1 36 0 275 259 27 45 chr11 33152216 33152328 -115631144 + L3b LINE CR1 1319 1428 -155 272 318 91 19 chr11 33155429 33155583 -115627889 - MIR SINE MIR -49 213 49 29 28 0 0 chr11 33156429 33156465 -115627007 + AT_rich Low_complexity Low_complexity 1 36 0 429 220 162 28 chr11 33157984 33158070 -115625402 - L1ME3A LINE L1 -25 6139 6066 2289 105 0 0 chr11 33158070 33158375 -115625097 - AluSx SINE Alu -7 305 1 429 220 162 28 chr11 33158375 33158500 -115624972 - L1ME3A LINE L1 -98 6066 5892 26 0 0 0 chr11 33158909 33158935 -115624537 + AT_rich Low_complexity Low_complexity 1 26 0 228 111 0 0 chr11 33159775 33159811 -115623661 + (T)n Simple_repeat Simple_repeat 1 36 0 1516 185 49 51 chr11 33160207 33160596 -115622876 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr11 33161622 33161644 -115621828 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr11 33162584 33162629 -115620843 + AT_rich Low_complexity Low_complexity 1 45 0 517 175 8 56 chr11 33162667 33162793 -115620679 + FLAM_C SINE Alu 21 140 -3 25 0 0 0 chr11 33162847 33162872 -115620600 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr11 33165375 33165412 -115618060 + AT_rich Low_complexity Low_complexity 1 37 0 2094 126 0 0 chr11 33165839 33166133 -115617339 - AluSx SINE Alu -18 294 1 858 132 8 0 chr11 33166142 33166263 -115617209 - AluSq/x SINE Alu -191 122 1 1876 137 22 29 chr11 33166342 33166656 -115616816 + AluSx SINE Alu 1 312 0 527 83 0 48 chr11 33170284 33170368 -115613104 + MADE1 DNA Mariner 1 80 0 346 201 52 52 chr11 33170411 33170565 -115612907 - L1ME3A LINE L1 -2401 5407 5254 2146 113 3 0 chr11 33171251 33171544 -115611928 - AluSx SINE Alu -18 294 1 2206 125 26 6 chr11 33171940 33172292 -115611180 - MER46B DNA MER2_type 0 236 3 22 0 0 0 chr11 33172341 33172363 -115611109 + AT_rich Low_complexity Low_complexity 1 22 0 2839 217 113 11 chr11 33172409 33173502 -115609970 - L1ME1 LINE L1 -4 6231 5032 393 210 107 107 chr11 33173500 33173743 -115609729 - L1ME1 LINE L1 -4194 2202 1960 * 1746 305 126 26 chr11 33173748 33175184 -115608288 - L1ME1 LINE L1 -4781 1615 37 2200 112 0 0 chr11 33175209 33175503 -115607969 - AluSx SINE Alu -18 294 1 232 253 58 11 chr11 33175699 33175786 -115607686 + L1MC/D LINE L1 5687 5777 -2031 27 49 0 0 chr11 33175898 33175939 -115607533 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 33176507 33176528 -115606944 + AT_rich Low_complexity Low_complexity 1 21 0 325 293 171 24 chr11 33178873 33179037 -115604435 + MIR SINE MIR 4 191 -71 1606 102 40 0 chr11 33179392 33179618 -115603854 - AluSg/x SINE Alu -2 310 76 484 81 0 0 chr11 33180540 33180602 -115602870 - Alu SINE Alu -15 297 236 180 332 125 61 chr11 33180869 33181245 -115602227 + L2 LINE L2 2341 2740 -574 445 211 29 19 chr11 33181270 33181374 -115602098 - FLAM_C SINE Alu -15 128 24 1186 145 42 10 chr11 33181692 33181885 -115601587 - MER3 DNA MER1_type -1 208 10 209 207 52 35 chr11 33181910 33181968 -115601504 + L2 LINE L2 3214 3272 0 2095 123 3 3 chr11 33182841 33183149 -115600323 + AluSx SINE Alu 3 310 -2 845 231 16 0 chr11 33185772 33185954 -115597518 - MER58A DNA MER1_type -2 222 38 3092 238 75 48 chr11 33185959 33187047 -115596425 - L2 LINE L2 -500 2814 1655 2211 74 0 3 chr11 33187556 33187864 -115595608 - AluSq SINE Alu 0 307 1 503 280 133 18 chr11 33188711 33188936 -115594536 + MIR SINE MIR 3 253 -9 452 127 14 0 chr11 33189077 33189148 -115594324 + L1MA6 LINE L1 6067 6138 -162 778 152 15 0 chr11 33189149 33189281 -115594191 + AluSg/x SINE Alu 168 301 -11 941 164 0 6 chr11 33189281 33189458 -115594014 + L1MA6 LINE L1 6125 6300 0 1824 191 91 9 chr11 33190426 33190877 -115592595 - L1MC4a LINE L1 -223 7585 7098 780 194 61 6 chr11 33191551 33191716 -115591756 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr11 33194305 33194327 -115589145 + AT_rich Low_complexity Low_complexity 1 22 0 880 111 0 0 chr11 33194431 33194548 -115588924 - AluSg/x SINE Alu -21 289 173 1747 157 7 3 chr11 33194693 33194980 -115588492 + AluJb SINE Alu 1 288 -24 396 302 26 0 chr11 33195808 33195924 -115587548 + L2 LINE L2 3192 3310 -3 472 213 120 0 chr11 33196127 33196235 -115587237 + FLAM_C SINE Alu 1 121 -22 2363 125 3 3 chr11 33196292 33196652 -115586820 + MER46B DNA MER2_type 1 235 -1 1802 179 0 3 chr11 33196851 33197153 -115586319 + AluSx SINE Alu 1 301 -11 608 275 57 36 chr11 33197477 33197724 -115585748 + MIR SINE MIR 11 262 0 237 373 49 10 chr11 33198516 33198618 -115584854 + MIR SINE MIR 20 125 -83 21 0 0 0 chr11 33198787 33198808 -115584664 + AT_rich Low_complexity Low_complexity 1 21 0 316 289 48 19 chr11 33198999 33199103 -115584369 - MIR SINE MIR -91 171 65 9789 151 32 13 chr11 33199111 33201878 -115581594 + L1MA5 LINE L1 3488 6300 0 250 146 0 0 chr11 33201979 33202020 -115581452 + L1MC4 LINE L1 6504 6544 -1498 1918 244 183 55 chr11 33202062 33203161 -115580311 + L1MC4 LINE L1 6654 7892 -150 251 259 46 28 chr11 33203235 33203343 -115580129 + L1MC4 LINE L1 7904 8013 -29 808 257 99 37 chr11 33203392 33203664 -115579808 - L2 LINE L2 -1 3312 3024 1424 198 33 16 chr11 33203667 33203970 -115579502 - L1M4 LINE L1 -559 5615 5308 346 278 97 75 chr11 33204040 33204412 -115579060 + L1MEd LINE L1 707 1068 -5051 688 304 45 35 chr11 33204431 33204940 -115578532 + L1MEd LINE L1 1156 1669 -4641 2290 93 6 0 chr11 33204951 33205262 -115578210 + AluSp SINE Alu 1 313 0 4115 123 33 1 chr11 33205401 33206076 -115577396 + L1MA5 LINE L1 5601 6296 -4 384 252 175 26 chr11 33206076 33206265 -115577207 - MER54A LTR ERVL -283 361 147 24 85 0 0 chr11 33206292 33206351 -115577121 + AT_rich Low_complexity Low_complexity 1 59 0 299 398 41 0 chr11 33206354 33206525 -115576947 - L2 LINE L2 -1733 1581 1404 2234 180 62 17 chr11 33206591 33207074 -115576398 - MLT1D LTR MaLR 0 505 1 495 260 110 27 chr11 33207096 33207242 -115576230 + MER5A DNA MER1_type 2 159 -30 325 89 0 54 chr11 33207610 33207666 -115575806 - MIR SINE MIR -55 207 155 1196 78 0 0 chr11 33207670 33207854 -115575618 - AluY SINE Alu 0 313 130 207 0 0 0 chr11 33207854 33207877 -115575595 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2445 52 0 0 chr11 33207879 33208167 -115575305 - AluY SINE Alu -23 288 1 445 310 9 0 chr11 33208177 33208293 -115575179 - MIR SINE MIR -118 144 28 193 167 37 0 chr11 33208645 33208699 -115574773 + (TA)n Simple_repeat Simple_repeat 2 57 0 897 157 88 13 chr11 33209363 33209522 -115573950 + AluJb SINE Alu 129 299 -13 255 259 24 24 chr11 33209698 33209783 -115573689 + MER5A DNA MER1_type 70 154 -35 403 221 0 0 chr11 33210266 33210352 -115573120 - FRAM/FAM SINE Alu -80 86 1 22 0 0 0 chr11 33210819 33210841 -115572631 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 33210915 33210950 -115572522 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 33211315 33211352 -115572120 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr11 33211640 33211662 -115571810 + AT_rich Low_complexity Low_complexity 1 22 0 773 217 111 1 chr11 33214350 33214540 -115568932 + MER33 DNA MER1_type 1 198 -88 26 30 0 0 chr11 33216337 33216370 -115567102 + AT_rich Low_complexity Low_complexity 1 33 0 2667 257 76 23 chr11 33217041 33218128 -115565344 + L1ME3A LINE L1 5001 6144 -26 1085 268 60 31 chr11 33219103 33219555 -115563917 - L1MC4a LINE L1 -1817 5991 5527 370 304 20 0 chr11 33221058 33221169 -115562303 + MIR SINE MIR 38 151 -57 637 262 86 90 chr11 33221390 33221913 -115561559 + L1ME3A LINE L1 5643 6166 -4 24 67 0 0 chr11 33221913 33221958 -115561514 + AT_rich Low_complexity Low_complexity 1 45 0 2299 67 0 3 chr11 33223688 33224015 -115559457 - AluY SINE Alu 0 326 1 2130 104 0 0 chr11 33225023 33225303 -115558169 + AluSc SINE Alu 14 293 -16 667 244 212 37 chr11 33225556 33225966 -115557506 + MLT1D LTR MaLR 24 505 0 3378 188 35 9 chr11 33226017 33226694 -115556778 + MLT1D-int LTR MaLR 109 803 -568 6513 145 68 31 chr11 33226698 33227919 -115555553 - Tigger1 DNA MER2_type -1152 1266 1 2480 127 3 11 chr11 33227967 33228345 -115555127 - THE1C LTR MaLR 0 375 1 9748 111 29 42 chr11 33228345 33229466 -115554006 - THE1C-int LTR MaLR 0 1580 485 2259 81 3 14 chr11 33229466 33229762 -115553710 - AluY SINE Alu -18 293 1 9748 111 29 42 chr11 33229762 33230241 -115553231 - THE1C-int LTR MaLR -1095 485 1 779 132 0 69 chr11 33230241 33230385 -115553087 - THE1C LTR MaLR 0 375 242 2993 166 56 31 chr11 33230427 33231434 -115552038 + L1MB4 LINE L1 4726 5784 -396 189 0 0 0 chr11 33231434 33231455 -115552017 + (TG)n Simple_repeat Simple_repeat 2 22 0 247 28 0 0 chr11 33231501 33231537 -115551935 - L1PA3 LINE L1 -3 6152 6117 372 209 29 33 chr11 33231555 33231883 -115551589 + (TATAA)n Simple_repeat Simple_repeat 1 326 0 289 182 18 18 chr11 33231883 33231938 -115551534 + Tigger5 DNA MER2_type 1 55 -2268 * 588 171 38 0 chr11 33231930 33232035 -115551437 + Tigger5 DNA MER2_type 2215 2323 0 1236 208 47 52 chr11 33232035 33232270 -115551202 + L1MB4 LINE L1 5791 6025 -155 2264 74 34 3 chr11 33232270 33232567 -115550905 - AluSc SINE Alu -2 307 2 1236 208 47 52 chr11 33232567 33232715 -115550757 + L1MB4 LINE L1 6025 6172 -8 184 272 304 22 chr11 33233143 33233367 -115550105 - L3 LINE CR1 -154 1423 1137 539 269 123 40 chr11 33233481 33233708 -115549764 + MIR SINE MIR 3 248 -14 2156 85 3 3 chr11 33233902 33234214 -115549258 + AluY SINE Alu 1 312 0 920 189 142 13 chr11 33234421 33234654 -115548818 + MER58B DNA MER1_type 78 340 -1 396 0 0 0 chr11 33234757 33234801 -115548671 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 310 290 87 51 chr11 33235062 33235200 -115548272 + HAL1 LINE L1 811 953 -1554 291 93 0 0 chr11 33235404 33235447 -115548025 + (CA)n Simple_repeat Simple_repeat 1 43 0 1090 237 14 0 chr11 33235541 33235756 -115547716 + MER58A DNA MER1_type 1 218 -6 1019 215 5 33 chr11 33235770 33235984 -115547488 - MER3 DNA MER1_type 0 209 2 1500 200 121 6 chr11 33236066 33236421 -115547051 + MSTD LTR MaLR 1 396 0 1858 145 62 0 chr11 33236490 33236609 -115546863 + AluSx SINE Alu 1 111 -201 369 0 0 0 chr11 33236609 33236650 -115546822 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1858 145 62 0 chr11 33236650 33236820 -115546652 + AluSx SINE Alu 111 308 -4 433 243 88 69 chr11 33237980 33238413 -115545059 + L1M4 LINE L1 2876 3316 -2830 693 264 13 12 chr11 33238436 33238657 -115544815 + L1ME3A LINE L1 11 233 -5837 1151 261 69 19 chr11 33238715 33239604 -115543868 + L1ME3A LINE L1 4746 5826 -278 285 182 171 0 chr11 33239580 33239668 -115543804 + L1MA6 LINE L1 5803 5905 -329 * 239 336 9 0 chr11 33239677 33239784 -115543688 + L1ME3A LINE L1 5862 5969 -135 4372 152 53 30 chr11 33240044 33240885 -115542587 + Tigger2 DNA MER2_type 1858 2718 0 2206 93 0 7 chr11 33241045 33241347 -115542125 - AluY SINE Alu -11 300 1 2293 107 0 0 chr11 33241497 33241806 -115541666 + AluSc SINE Alu 1 309 0 2231 78 0 3 chr11 33241820 33242114 -115541358 + AluY SINE Alu 6 298 -13 1735 154 33 54 chr11 33242349 33242753 -115540719 + L1MA8 LINE L1 5854 6250 -41 1101 84 54 0 chr11 33242829 33242995 -115540477 + L1PA11 LINE L1 6000 6174 0 207 273 55 0 chr11 33246259 33246314 -115537158 + L2 LINE L2 3214 3271 -1 1652 181 10 3 chr11 33248994 33249287 -115534185 + AluJo SINE Alu 1 295 -17 306 73 0 0 chr11 33249811 33249852 -115533620 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 36 0 0 chr11 33249851 33249879 -115533593 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1436 176 7 62 chr11 33250191 33250481 -115532991 + AluJo SINE Alu 9 282 -30 2141 88 0 10 chr11 33250646 33250943 -115532529 + AluY SINE Alu 1 294 -17 1616 185 14 0 chr11 33251320 33251607 -115531865 - AluJb SINE Alu -19 293 3 1749 131 76 4 chr11 33252006 33252281 -115531191 - AluSx SINE Alu -17 295 1 2095 86 10 14 chr11 33252443 33252735 -115530737 - AluSg SINE Alu -19 291 1 2224 104 3 0 chr11 33252915 33253223 -115530249 - AluSq SINE Alu -4 309 1 23 33 0 0 chr11 33253223 33253253 -115530219 + AT_rich Low_complexity Low_complexity 1 30 0 1872 141 3 53 chr11 33253312 33253432 -115530040 - AluSx SINE Alu -9 303 179 2273 103 0 3 chr11 33253432 33253734 -115529738 + AluSg SINE Alu 1 301 -9 1872 141 3 53 chr11 33253734 33253932 -115529540 - AluSx SINE Alu -133 179 1 2112 100 0 42 chr11 33254352 33254663 -115528809 + AluSx SINE Alu 1 298 -14 210 311 16 0 chr11 33255412 33255473 -115527999 - L3 LINE CR1 -1 1576 1515 680 317 68 28 chr11 33255494 33255819 -115527653 - L3 LINE CR1 -231 1346 1009 429 335 54 34 chr11 33256056 33256295 -115527177 - MIR SINE MIR -14 248 5 769 302 56 16 chr11 33257224 33257656 -115525816 - L1MC4a LINE L1 -1913 5895 5447 1394 192 10 51 chr11 33257677 33257989 -115525483 - AluJo SINE Alu -13 299 1 1027 222 96 20 chr11 33258948 33259440 -115524032 - MLT1E LTR MaLR 0 593 1 1299 148 35 5 chr11 33259602 33259804 -115523668 + AluJb SINE Alu 84 291 -21 887 265 5 0 chr11 33259844 33260033 -115523439 + MER58A DNA MER1_type 35 224 0 607 236 128 12 chr11 33260873 33261062 -115522410 - MIR SINE MIR -10 252 44 661 330 148 51 chr11 33261341 33262824 -115520648 + L2 LINE L2 1336 2961 -353 360 335 89 23 chr11 33263454 33263711 -115519761 - L2 LINE L2 -820 2494 2221 459 96 68 0 chr11 33263875 33263948 -115519524 + Alu SINE Alu 219 296 -15 341 267 35 0 chr11 33263948 33264034 -115519438 + MIR SINE MIR 171 259 -3 193 352 82 15 chr11 33265207 33265403 -115518069 - L2 LINE L2 -1243 2071 1863 840 306 128 10 chr11 33265419 33265818 -115517654 - L3 LINE CR1 -203 1374 929 485 333 140 38 chr11 33266114 33266822 -115516650 - L2 LINE L2 -4 3268 2458 449 223 121 70 chr11 33266827 33266984 -115516488 - MIR SINE MIR -1 261 97 1647 170 46 7 chr11 33267526 33267575 -115515897 - L1PB4 LINE L1 -1 6165 6119 2266 107 0 19 chr11 33267575 33267893 -115515579 - AluSq SINE Alu -1 312 1 1647 170 46 7 chr11 33267893 33268179 -115515293 - L1PB4 LINE L1 -47 6119 5830 2388 59 0 34 chr11 33268183 33268504 -115514968 - AluY SINE Alu -1 310 1 223 312 86 99 chr11 33268504 33268631 -115514841 - L2 LINE L2 -568 2746 2619 2266 46 3 7 chr11 33268631 33268952 -115514520 - AluY SINE Alu 0 320 1 223 312 86 99 chr11 33268952 33269083 -115514389 - L2 LINE L2 -695 2619 2489 240 35 0 0 chr11 33269083 33269112 -115514360 + (TG)n Simple_repeat Simple_repeat 1 29 0 223 312 86 99 chr11 33269112 33269175 -115514297 - L2 LINE L2 -825 2489 2427 23 92 0 0 chr11 33269511 33269576 -115513896 + AT_rich Low_complexity Low_complexity 1 65 0 974 186 67 105 chr11 33270109 33270172 -115513300 - L1ME1 LINE L1 -6 6160 6096 1474 207 0 11 chr11 33270172 33270457 -115513015 - AluJo SINE Alu -25 287 6 974 186 67 105 chr11 33270457 33270737 -115512735 - L1ME1 LINE L1 -70 6096 5830 272 197 16 33 chr11 33270788 33270849 -115512623 - MER2 DNA MER2_type -261 84 25 1308 210 81 73 chr11 33270899 33271158 -115512314 - L1ME1 LINE L1 -335 5831 5576 1895 161 0 0 chr11 33271158 33271466 -115512006 - AluSx SINE Alu 0 310 3 1308 210 81 73 chr11 33271466 33272288 -115511184 - L1ME1 LINE L1 -590 5576 4635 2179 109 143 8 chr11 33272288 33272665 -115510807 - MSTA LTR MaLR 0 428 1 1308 210 81 73 chr11 33272665 33272984 -115510488 - L1ME1 LINE L1 -1531 4635 4320 202 54 27 27 chr11 33272988 33273025 -115510447 + (TATAG)n Simple_repeat Simple_repeat 2 38 0 310 185 27 71 chr11 33273063 33273247 -115510225 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 527 242 51 13 chr11 33273292 33273449 -115510023 - L1ME1 LINE L1 -2001 4145 3983 22 35 0 0 chr11 33273485 33273514 -115509958 + AT_rich Low_complexity Low_complexity 1 29 0 586 247 36 10 chr11 33273522 33273716 -115509756 - L1ME1 LINE L1 -2376 3770 3572 248 290 130 7 chr11 33273760 33273898 -115509574 - L1ME1 LINE L1 -2475 3671 3517 2234 43 43 7 chr11 33273999 33274279 -115509193 + AluY SINE Alu 1 290 -21 800 132 7 29 chr11 33275300 33275436 -115508036 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 33276426 33276454 -115507018 + AT_rich Low_complexity Low_complexity 1 28 0 3676 256 63 66 chr11 33276829 33278131 -115505341 + L1MEc LINE L1 46 1343 -5053 2157 84 0 0 chr11 33278131 33278406 -115505066 - AluY SINE Alu -7 304 30 3676 256 63 66 chr11 33278406 33278827 -115504645 + L1MEc LINE L1 1343 1764 -4632 44064 38 4 1 chr11 33278827 33284961 -115498511 + L1PA3 LINE L1 2 6155 0 451 247 0 45 chr11 33285130 33285191 -115498281 + L1MA10 LINE L1 6188 6250 -84 7657 129 31 6 chr11 33285191 33286459 -115497013 - HSMAR2 DNA Mariner -1 1301 1 451 247 0 45 chr11 33286459 33286551 -115496921 + L1MA10 LINE L1 6250 6334 0 2195 264 169 34 chr11 33286862 33288049 -115495423 + L2 LINE L2 1925 3276 -37 1493 249 41 61 chr11 33288085 33288533 -115494939 + MLT2B1 LTR ERVL 42 481 -39 390 21 0 0 chr11 33288533 33288580 -115494892 + (CA)n Simple_repeat Simple_repeat 1 47 0 1493 249 41 61 chr11 33288580 33288620 -115494852 + MLT2B1 LTR ERVL 481 520 0 3105 131 78 0 chr11 33288638 33289127 -115494345 + MER1A DNA MER1_type 1 527 0 1715 140 24 86 chr11 33289216 33289588 -115493884 - L1MA9 LINE L1 -5 6307 5959 231 350 25 12 chr11 33293381 33293461 -115490011 + MIR SINE MIR 32 112 -150 2218 100 3 10 chr11 33294436 33294737 -115488735 + AluSp SINE Alu 1 299 -14 25 31 0 0 chr11 33294785 33294817 -115488655 + AT_rich Low_complexity Low_complexity 1 32 0 211 265 20 27 chr11 33295448 33295595 -115487877 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 1459 165 56 25 chr11 33295600 33295885 -115487587 + MER7A DNA MER2_type 1 292 -54 2064 128 3 7 chr11 33296281 33296585 -115486887 - AluSq SINE Alu -10 303 1 7179 48 6 0 chr11 33299221 33300873 -115482599 - L1PA5 LINE L1 0 6154 4495 1758 147 4 4 chr11 33300940 33301212 -115482260 + AluSx SINE Alu 24 295 -17 1648 250 66 73 chr11 33301519 33301887 -115481585 - HsTC2a DNA Tc2 -1161 739 377 1465 75 5 16 chr11 33301887 33302074 -115481398 - AluSp SINE Alu -128 185 1 1648 250 66 73 chr11 33302074 33302446 -115481026 - HsTC2a DNA Tc2 -1523 377 4 2359 127 124 5 chr11 33302489 33302907 -115480565 - Tigger1 DNA MER2_type -1 2417 1950 5204 160 34 44 chr11 33302909 33303644 -115479828 + L1PA16 LINE L1 4252 4993 -1173 2321 119 0 0 chr11 33303644 33303956 -115479516 + AluSx SINE Alu 1 312 0 5204 160 34 44 chr11 33303956 33304317 -115479155 + L1PA16 LINE L1 4993 5356 -810 1671 128 97 0 chr11 33304317 33304574 -115478898 + AluSx SINE Alu 8 289 -23 5204 160 34 44 chr11 33304574 33305308 -115478164 + L1PA16 LINE L1 5356 6096 -70 2121 109 0 32 chr11 33305308 33305619 -115477853 - AluSx SINE Alu -11 301 1 5204 160 34 44 chr11 33305619 33305632 -115477840 + L1PA16 LINE L1 6096 6108 -58 2350 101 0 0 chr11 33305632 33305939 -115477533 - AluSg SINE Alu -3 307 1 5204 160 34 44 chr11 33305939 33306010 -115477462 + L1PA16 LINE L1 6108 6164 -2 7605 109 36 3 chr11 33306010 33307165 -115476307 - Tigger1 DNA MER2_type -454 1964 771 195 42 0 0 chr11 33307440 33307464 -115476008 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1832 141 0 27 chr11 33307559 33307856 -115475616 + AluJo SINE Alu 1 289 -23 575 260 88 11 chr11 33307921 33308102 -115475370 - L1ME1 LINE L1 -12 6154 5960 728 114 0 9 chr11 33308109 33308225 -115475247 - MLT1A2-int LTR MaLR -1256 115 1 1504 240 11 45 chr11 33308225 33308604 -115474868 - MLT1A2 LTR MaLR 0 374 9 343 324 0 0 chr11 33308608 33308710 -115474762 - MLT1A2 LTR MaLR -260 114 13 424 307 0 0 chr11 33308714 33308828 -115474644 - MLT1A2 LTR MaLR -260 114 1 37247 70 5 3 chr11 33309035 33314786 -115468686 + L1PA5 LINE L1 395 6151 -3 201 286 0 0 chr11 33315426 33315489 -115467983 + CT-rich Low_complexity Low_complexity 2 64 0 1405 136 0 26 chr11 33315496 33315724 -115467748 - AluJb SINE Alu -9 303 82 1393 268 157 39 chr11 33315770 33316523 -115466949 - HAL1 LINE L1 -338 2169 1328 1692 183 3 3 chr11 33316594 33316895 -115466577 - AluJb SINE Alu -11 301 1 781 260 91 9 chr11 33316919 33317138 -115466334 + MIR SINE MIR 5 241 -21 614 276 97 31 chr11 33317256 33317575 -115465897 - HAL1 LINE L1 -1417 1090 751 353 328 56 71 chr11 33317687 33318010 -115465462 - HAL1 LINE L1 -1861 646 329 942 184 0 6 chr11 33318280 33318448 -115465024 + AluJo SINE Alu 121 287 -25 703 253 35 5 chr11 33318632 33318830 -115464642 + MER3 DNA MER1_type 2 205 -4 32 26 0 0 chr11 33319024 33319063 -115464409 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 33319325 33319348 -115464124 + AT_rich Low_complexity Low_complexity 1 23 0 1803 133 22 0 chr11 33319352 33319666 -115463806 - AluSq SINE Alu 0 320 1 21 0 0 0 chr11 33320270 33320291 -115463181 + AT_rich Low_complexity Low_complexity 1 21 0 1335 158 38 0 chr11 33320654 33320863 -115462609 + AluJo SINE Alu 3 219 -93 242 98 235 0 chr11 33320908 33320959 -115462513 + MER3 DNA MER1_type 147 209 0 * 444 203 0 0 chr11 33320959 33321006 -115462466 - MER3 DNA MER1_type -162 47 1 593 261 100 54 chr11 33321272 33321478 -115461994 + HAL1b LINE L1 344 568 -780 2213 69 7 16 chr11 33321478 33321781 -115461691 - AluY SINE Alu -11 300 1 593 261 100 54 chr11 33321781 33321854 -115461618 + HAL1b LINE L1 568 636 -712 344 253 25 0 chr11 33321945 33322024 -115461448 + L2 LINE L2 3177 3257 -56 846 257 64 55 chr11 33322061 33322548 -115460924 + HAL1b LINE L1 658 1148 -200 323 278 198 0 chr11 33322927 33323089 -115460383 - L1MC4a LINE L1 -1882 5926 5733 408 231 71 101 chr11 33323150 33323388 -115460084 - L1MC4a LINE L1 -529 5633 5403 30 0 0 0 chr11 33323422 33323452 -115460020 + AT_rich Low_complexity Low_complexity 1 30 0 2000 139 0 0 chr11 33323542 33323829 -115459643 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr11 33323829 33323866 -115459606 + AT_rich Low_complexity Low_complexity 1 37 0 234 163 113 62 chr11 33324712 33324792 -115458680 + L2 LINE L2 3121 3204 -109 807 175 34 178 chr11 33324803 33324942 -115458530 + MIR SINE MIR 2 130 -132 377 22 0 0 chr11 33324942 33324988 -115458484 - MADE1 DNA Mariner -34 46 1 807 175 34 178 chr11 33324988 33325095 -115458377 + MIR SINE MIR 130 251 -11 246 261 14 14 chr11 33325120 33325189 -115458283 + L2 LINE L2 3230 3298 -15 3864 190 52 34 chr11 33325227 33325407 -115458065 + L1MB7 LINE L1 4958 5133 -1051 1939 174 97 5 chr11 33325407 33325799 -115457673 - MSTA LTR MaLR 0 428 1 3864 190 52 34 chr11 33325799 33325967 -115457505 + L1MB7 LINE L1 5133 5296 -888 2300 98 3 0 chr11 33325967 33326263 -115457209 + AluY SINE Alu 1 297 -14 3864 190 52 34 chr11 33326263 33327081 -115456391 + L1MB7 LINE L1 5296 6163 -21 1346 148 14 0 chr11 33327100 33327309 -115456163 + AluJo SINE Alu 1 212 -100 354 155 52 0 chr11 33327320 33327436 -115456036 + (TA)n Simple_repeat Simple_repeat 1 122 0 678 280 39 58 chr11 33327963 33328065 -115455407 - MIR SINE MIR -8 254 152 1655 161 40 15 chr11 33328065 33328368 -115455104 - AluJb SINE Alu 0 310 1 678 280 39 58 chr11 33328368 33328520 -115454952 - MIR SINE MIR -110 152 3 2253 77 0 7 chr11 33330945 33331232 -115452240 + AluSg1 SINE Alu 1 285 -24 201 311 54 14 chr11 33331285 33331359 -115452113 + L2 LINE L2 3182 3258 -55 1414 264 91 27 chr11 33331604 33332153 -115451319 + L1MC4a LINE L1 5256 5839 -1969 1850 99 20 0 chr11 33332437 33332689 -115450783 - AluSq SINE Alu -56 257 1 2345 104 0 0 chr11 33332768 33333077 -115450395 - AluSg SINE Alu -1 309 1 1733 187 6 16 chr11 33333321 33333636 -115449836 - AluJb SINE Alu 0 312 1 610 289 171 11 chr11 33333703 33333990 -115449482 + L2 LINE L2 2980 3312 -1 405 0 0 0 chr11 33334308 33334353 -115449119 + (CA)n Simple_repeat Simple_repeat 2 46 0 1679 132 126 26 chr11 33334362 33334703 -115448769 - THE1C LTR MaLR 0 375 1 357 120 0 0 chr11 33334710 33334760 -115448712 - 5S rRNA rRNA -71 50 1 224 283 109 0 chr11 33335472 33335564 -115447908 - MIR SINE MIR -63 199 98 24 53 0 0 chr11 33336234 33336272 -115447200 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 33337182 33337208 -115446264 + AT_rich Low_complexity Low_complexity 1 26 0 394 275 58 82 chr11 33339691 33339898 -115443574 - MIR SINE MIR -4 258 57 198 303 15 0 chr11 33340045 33340111 -115443361 + MIR SINE MIR 87 153 -55 363 346 112 5 chr11 33340571 33340759 -115442713 - MIR SINE MIR -35 227 20 24 0 0 0 chr11 33341244 33341268 -115442204 + AT_rich Low_complexity Low_complexity 1 24 0 1581 180 16 74 chr11 33341700 33342078 -115441394 + MLT1A2 LTR MaLR 3 358 -16 745 217 56 123 chr11 33342078 33342469 -115441003 - MLT1A1 LTR MaLR 0 365 1 555 304 8 39 chr11 33342668 33342928 -115440544 - HERVFH21 LTR ERV1 -346 6183 5932 517 31 0 0 chr11 33342922 33342987 -115440485 - HERVFH21 LTR ERV1 -1815 4714 4650 * 6111 194 36 28 chr11 33342991 33344475 -115438997 - HERVFH21 LTR ERV1 -3744 2785 1290 1557 156 3 54 chr11 33344585 33344880 -115438592 + AluJb SINE Alu 17 296 -16 1722 125 45 0 chr11 33345174 33345461 -115438011 - L1PA16 LINE L1 -4 6162 5863 825 269 72 75 chr11 33345633 33345981 -115437491 + L2 LINE L2 2364 2712 -602 937 214 35 0 chr11 33345981 33346182 -115437290 + MER3 DNA MER1_type 2 209 0 825 269 72 75 chr11 33346182 33346316 -115437156 + L2 LINE L2 2712 2845 -469 830 313 79 34 chr11 33346485 33346986 -115436486 - L2 LINE L2 -24 3289 2765 21 0 0 0 chr11 33346986 33347007 -115436465 + AT_rich Low_complexity Low_complexity 1 21 0 228 371 89 5 chr11 33347033 33347235 -115436237 - L2 LINE L2 -1833 1481 1263 189 293 114 49 chr11 33347288 33347411 -115436061 - L2 LINE L2 -2190 1124 994 212 322 28 79 chr11 33347545 33347759 -115435713 - L2 LINE L2 -2654 660 458 292 204 0 97 chr11 33348148 33348241 -115435231 - MER103 DNA DNA -9 157 74 391 211 30 45 chr11 33348392 33348525 -115434947 + HAL1b LINE L1 1200 1330 -18 2136 105 24 7 chr11 33348531 33348825 -115434647 - AluSx SINE Alu -13 299 1 25 31 0 0 chr11 33348952 33348984 -115434488 + AT_rich Low_complexity Low_complexity 1 32 0 2858 213 230 23 chr11 33349027 33350027 -115433445 + L1MC4 LINE L1 6749 8037 -5 184 232 36 36 chr11 33350216 33350272 -115433200 + MIR SINE MIR 206 261 -1 367 285 87 35 chr11 33350733 33350905 -115432567 - MIR SINE MIR -1 261 81 3923 178 62 56 chr11 33350916 33352417 -115431055 + L1MB2 LINE L1 4662 6171 0 3174 183 44 40 chr11 33352564 33353037 -115430435 + L1MB8 LINE L1 5423 5902 -276 1097 218 17 114 chr11 33353037 33353441 -115430031 - MLT1A1 LTR MaLR 0 365 1 3174 183 44 40 chr11 33353441 33353720 -115429752 + L1MB8 LINE L1 5902 6178 0 1091 281 92 16 chr11 33353723 33354146 -115429326 - L2 LINE L2 -1378 1936 1482 1529 194 26 80 chr11 33354173 33354478 -115428994 - MLT1A1 LTR MaLR 0 365 84 1469 106 23 0 chr11 33354478 33354695 -115428777 - L1PA13 LINE L1 0 6163 5942 1529 194 26 80 chr11 33354695 33354775 -115428697 - MLT1A1 LTR MaLR -281 84 1 1722 254 183 29 chr11 33354775 33355492 -115427980 - L2 LINE L2 -1866 1448 622 433 301 6 64 chr11 33356225 33356398 -115427074 - MIR3 SINE MIR -1 207 45 364 325 12 31 chr11 33356693 33356853 -115426619 + MIR SINE MIR 20 176 -86 243 0 0 0 chr11 33358168 33358195 -115425277 + (TA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr11 33358406 33358435 -115425037 + AT_rich Low_complexity Low_complexity 1 29 0 3590 155 29 7 chr11 33358538 33359009 -115424463 + L1MA8 LINE L1 5164 5657 -634 5528 142 124 9 chr11 33359009 33360113 -115423359 - Tigger3b DNA MER2_type 0 1231 1 3590 155 29 7 chr11 33360113 33360381 -115423091 + L1MA8 LINE L1 5657 5918 -373 21 0 0 0 chr11 33361438 33361459 -115422013 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 33362021 33362042 -115421430 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 33363241 33363278 -115420194 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 33364221 33364242 -115419230 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 33365035 33365061 -115418411 + AT_rich Low_complexity Low_complexity 1 26 0 2043 131 7 0 chr11 33365139 33365437 -115418035 - AluSx SINE Alu -12 300 1 1602 203 3 16 chr11 33365466 33365782 -115417690 + AluJo SINE Alu 1 312 0 604 165 110 0 chr11 33367251 33367427 -115416045 - L1M3 LINE L1 -717 5453 5255 494 216 108 16 chr11 33367437 33367631 -115415841 - L1M3 LINE L1 -921 5225 5014 182 288 17 17 chr11 33367900 33367959 -115415513 + L2 LINE L2 3214 3272 0 682 175 50 0 chr11 33368115 33368235 -115415237 + FLAM_C SINE Alu 1 126 -17 191 152 22 0 chr11 33368564 33368610 -115414862 + (CTA)n Simple_repeat Simple_repeat 1 47 0 249 292 52 21 chr11 33368611 33368707 -115414765 - MIR SINE MIR -26 236 138 247 341 92 17 chr11 33368798 33368971 -115414501 - MIR SINE MIR -76 186 1 524 254 270 11 chr11 33370107 33370296 -115413176 - MIR SINE MIR -22 240 3 402 197 231 14 chr11 33370398 33370545 -115412927 + MIR SINE MIR 76 254 -8 379 216 0 40 chr11 33370918 33370992 -115412480 - L2 LINE L2 -43 3270 3200 21 0 0 0 chr11 33371183 33371204 -115412268 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 33372252 33372280 -115411192 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr11 33375038 33375087 -115408385 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr11 33377580 33377605 -115405867 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr11 33378721 33378753 -115404719 + AT_rich Low_complexity Low_complexity 1 32 0 189 326 23 23 chr11 33383399 33383485 -115399987 - L3 LINE CR1 -533 1044 959 31 44 0 0 chr11 33383531 33383576 -115399896 + AT_rich Low_complexity Low_complexity 1 45 0 235 136 85 0 chr11 33385072 33385131 -115398341 + T-rich Low_complexity Low_complexity 6 69 0 21 0 0 0 chr11 33387410 33387431 -115396041 + AT_rich Low_complexity Low_complexity 1 21 0 205 315 22 67 chr11 33388243 33388332 -115395140 - L2 LINE L2 0 3272 3188 23 68 0 0 chr11 33388861 33388905 -115394567 + AT_rich Low_complexity Low_complexity 1 44 0 552 289 176 47 chr11 33391967 33392330 -115391142 + L2 LINE L2 2896 3305 -8 398 277 97 63 chr11 33392382 33392588 -115390884 - MIR SINE MIR -10 252 40 29 0 0 0 chr11 33392637 33392666 -115390806 + AT_rich Low_complexity Low_complexity 1 29 0 651 303 58 33 chr11 33392668 33392909 -115390563 - MIR SINE MIR -14 248 2 24 53 0 0 chr11 33393859 33393897 -115389575 + AT_rich Low_complexity Low_complexity 1 38 0 2078 121 0 14 chr11 33394505 33394795 -115388677 + AluSx SINE Alu 7 292 -20 21 71 0 0 chr11 33394870 33394912 -115388560 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr11 33395843 33395872 -115387600 + AT_rich Low_complexity Low_complexity 1 29 0 268 313 24 0 chr11 33396334 33396417 -115387055 + L2 LINE L2 3188 3272 0 348 240 176 0 chr11 33397199 33397238 -115386234 + MER58A DNA MER1_type 5 36 -305 198 0 0 0 chr11 33397238 33397260 -115386212 + (TTG)n Simple_repeat Simple_repeat 2 23 0 348 240 176 0 chr11 33397260 33397345 -115386127 + MER58A DNA MER1_type 36 151 -73 225 301 321 5 chr11 33397630 33397839 -115385633 - L3 LINE CR1 -7 1570 1296 26 82 0 0 chr11 33397908 33397969 -115385503 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr11 33398694 33398716 -115384756 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 33399292 33399321 -115384151 + AT_rich Low_complexity Low_complexity 1 29 0 189 74 0 0 chr11 33400130 33400157 -115383315 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 33400406 33400428 -115383044 + AT_rich Low_complexity Low_complexity 1 22 0 2005 134 20 0 chr11 33400447 33400745 -115382727 - AluJb SINE Alu -8 304 1 2069 147 0 0 chr11 33400792 33401099 -115382373 - AluSx SINE Alu -5 307 1 2363 81 0 3 chr11 33401202 33401499 -115381973 + AluSc SINE Alu 1 296 -13 809 147 0 37 chr11 33403274 33403410 -115380062 - FLAM_A SINE Alu -2 131 1 603 0 0 0 chr11 33403462 33403529 -115379943 + (TG)n Simple_repeat Simple_repeat 2 68 0 476 329 57 84 chr11 33403767 33403899 -115379573 + L2 LINE L2 2811 2945 -327 2102 72 59 3 chr11 33403899 33404189 -115379283 - AluSc SINE Alu -3 306 1 476 329 57 84 chr11 33404189 33404530 -115378942 + L2 LINE L2 2945 3271 -1 39 50 0 0 chr11 33405568 33405628 -115377844 + AT_rich Low_complexity Low_complexity 1 60 0 1976 148 10 7 chr11 33407316 33407621 -115375851 + AluJb SINE Alu 1 306 -6 2217 98 3 0 chr11 33407816 33408112 -115375360 - AluSx SINE Alu -3 309 13 1741 160 11 3 chr11 33408120 33408437 -115375035 - AluJo SINE Alu 0 319 1 2444 58 14 0 chr11 33410077 33410369 -115373103 - AluSp SINE Alu -17 296 1 1572 247 136 17 chr11 33410611 33411345 -115372127 + L2 LINE L2 2486 3293 -20 331 306 243 0 chr11 33411477 33411650 -115371822 - MIR SINE MIR -27 235 21 487 138 17 60 chr11 33411725 33411841 -115371631 - Charlie2a DNA MER1_type -42 2820 2710 443 201 243 0 chr11 33411823 33411967 -115371505 - Charlie2a DNA MER1_type -1199 1663 1485 * 271 184 184 71 chr11 33412001 33412099 -115371373 - Charlie2b DNA MER1_type -2114 668 560 * 815 262 71 12 chr11 33412088 33412340 -115371132 - Charlie2b DNA MER1_type -2515 267 1 4930 166 25 73 chr11 33412499 33412973 -115370499 - L1MC1 LINE L1 -6 6607 6112 1685 183 0 14 chr11 33412973 33413263 -115370209 + AluJb SINE Alu 1 286 -26 4930 166 25 73 chr11 33413263 33413300 -115370172 - L1MC1 LINE L1 -501 6112 6075 366 80 0 0 chr11 33413300 33413350 -115370122 + (TG)n Simple_repeat Simple_repeat 1 50 0 4930 166 25 73 chr11 33413350 33414000 -115369472 - L1MC1 LINE L1 -538 6075 5500 993 212 28 24 chr11 33414077 33414130 -115369342 - L1MC1 LINE L1 -1370 5056 5005 2073 157 37 18 chr11 33414130 33414513 -115368959 - MLT1B LTR MaLR 0 390 1 993 212 28 24 chr11 33414513 33414709 -115368763 - L1MC1 LINE L1 -1421 5005 4806 1559 203 24 18 chr11 33414712 33415052 -115368420 - L1MC1 LINE L1 -6080 346 5 23 0 0 0 chr11 33415689 33415712 -115367760 + AT_rich Low_complexity Low_complexity 1 23 0 2398 91 3 0 chr11 33416533 33416841 -115366631 - AluSq SINE Alu -4 309 1 246 345 106 62 chr11 33417421 33417647 -115365825 - L2 LINE L2 -32 3240 3005 22 70 0 0 chr11 33417823 33417866 -115365606 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr11 33418189 33418212 -115365260 + AT_rich Low_complexity Low_complexity 1 23 0 1981 140 0 0 chr11 33419029 33419307 -115364165 - AluSx SINE Alu -34 278 1 596 229 34 72 chr11 33419362 33419655 -115363817 + L1M4 LINE L1 4769 5050 -1096 2227 93 3 3 chr11 33419871 33420171 -115363301 + AluSc SINE Alu 1 300 -9 27 29 0 0 chr11 33420415 33420449 -115363023 + AT_rich Low_complexity Low_complexity 1 34 0 2216 95 3 7 chr11 33420451 33420747 -115362725 + AluSc SINE Alu 1 295 -14 23 68 0 0 chr11 33420932 33420976 -115362496 + AT_rich Low_complexity Low_complexity 1 44 0 596 332 208 14 chr11 33421278 33421399 -115362073 - L2 LINE L2 -498 2816 2720 1730 148 42 0 chr11 33421399 33421682 -115361790 + AluJb SINE Alu 1 295 -17 596 332 208 14 chr11 33421682 33421785 -115361687 - L2 LINE L2 -594 2720 2638 219 69 0 0 chr11 33421785 33421814 -115361658 + (CAT)n Simple_repeat Simple_repeat 2 30 0 596 332 208 14 chr11 33421814 33422155 -115361317 - L2 LINE L2 -676 2638 2140 305 243 61 155 chr11 33422165 33422527 -115360945 - L2 LINE L2 -1282 2032 1705 1290 207 67 11 chr11 33423979 33424264 -115359208 + AluJo SINE Alu 2 302 0 617 279 57 0 chr11 33424482 33424640 -115358832 + MIR SINE MIR 3 169 -93 183 100 0 0 chr11 33424640 33424670 -115358802 + (TGG)n Simple_repeat Simple_repeat 2 31 0 375 320 67 28 chr11 33424842 33425020 -115358452 - MIR SINE MIR -52 210 26 25 0 0 0 chr11 33425222 33425247 -115358225 + AT_rich Low_complexity Low_complexity 1 25 0 219 69 0 0 chr11 33425586 33425615 -115357857 + (T)n Simple_repeat Simple_repeat 1 29 0 387 275 56 155 chr11 33427508 33427882 -115355590 + L2 LINE L2 2935 3271 -1 21049 52 3 4 chr11 33427966 33431434 -115352038 - L1PA5 LINE L1 -8 6146 2685 4534 45 2 0 chr11 33431434 33432006 -115351466 + L1P LINE L1 1961 2533 -3613 202 308 87 29 chr11 33432025 33432129 -115351343 + MIR SINE MIR 69 178 -84 25 0 0 0 chr11 33432588 33432613 -115350859 + AT_rich Low_complexity Low_complexity 1 25 0 1993 138 3 0 chr11 33433220 33433510 -115349962 - AluSx SINE Alu -21 291 1 2348 257 67 49 chr11 33433824 33434759 -115348713 + L1MC4 LINE L1 6648 7599 -443 1020 194 41 99 chr11 33434782 33435159 -115348313 + L1MC4 LINE L1 7648 7783 -2 309 204 15 10 chr11 33435184 33435341 -115348131 - MER46C DNA MER2_type -142 196 1 184 100 50 0 chr11 33436499 33436539 -115346933 + (TA)n Simple_repeat Simple_repeat 2 43 0 966 160 21 0 chr11 33436957 33437150 -115346322 + FRAM SINE Alu 1 195 0 935 107 25 97 chr11 33437173 33437369 -115346103 + L1MB3 LINE L1 5991 6172 -11 394 284 29 0 chr11 33437561 33437663 -115345809 + MIR SINE MIR 72 176 -86 203 177 145 0 chr11 33437680 33437742 -115345730 + MIR SINE MIR 150 220 -42 21 0 0 0 chr11 33438878 33438899 -115344573 + AT_rich Low_complexity Low_complexity 1 21 0 2981 34 0 0 chr11 33439088 33439442 -115344030 + L1PA5 LINE L1 5801 6154 0 29 0 0 0 chr11 33439442 33439471 -115344001 + AT_rich Low_complexity Low_complexity 1 29 0 2260 92 7 0 chr11 33439525 33439817 -115343655 + AluSx SINE Alu 4 297 -15 1287 219 100 41 chr11 33439868 33440237 -115343235 - MSTD LTR MaLR 0 396 6 1239 163 50 14 chr11 33440631 33440852 -115342620 - AluJo SINE Alu -1 311 83 24 0 0 0 chr11 33440855 33440879 -115342593 + AT_rich Low_complexity Low_complexity 1 24 0 1219 144 26 18 chr11 33440910 33441139 -115342333 - L1MA5A LINE L1 -4 6293 6063 720 191 0 8 chr11 33441140 33441266 -115342206 + FLAM_C SINE Alu 1 125 -18 361 121 35 75 chr11 33441271 33441444 -115342028 + (TTTAA)n Simple_repeat Simple_repeat 5 170 0 3320 120 24 13 chr11 33441456 33441998 -115341474 - L1MA5A LINE L1 -219 6078 5531 1824 189 134 24 chr11 33442391 33442845 -115340627 - MLT1D LTR MaLR 0 505 2 614 299 39 34 chr11 33444363 33444570 -115338902 + MIR SINE MIR 47 254 -8 23 54 0 0 chr11 33444645 33444682 -115338790 + AT_rich Low_complexity Low_complexity 1 37 0 523 280 109 35 chr11 33444705 33444962 -115338510 + L2 LINE L2 3038 3313 0 2126 135 0 0 chr11 33445135 33445432 -115338040 + AluSx SINE Alu 1 297 -15 197 315 68 0 chr11 33445712 33445785 -115337687 - L2 LINE L2 -642 2672 2595 286 187 22 44 chr11 33448539 33448630 -115334842 - L1MC5 LINE L1 -29 7932 7844 1737 215 95 50 chr11 33449335 33449818 -115333654 - MLT1D LTR MaLR 0 505 1 304 265 70 43 chr11 33450084 33450269 -115333203 - MIR SINE MIR 0 262 73 213 353 92 17 chr11 33450324 33450443 -115333029 - L2 LINE L2 -6 3266 3139 482 241 241 10 chr11 33450454 33450653 -115332819 + MIR SINE MIR 6 250 -12 1715 177 7 3 chr11 33450802 33451105 -115332367 - AluJo SINE Alu 0 304 1 571 207 250 5 chr11 33451135 33451343 -115332129 + MIR SINE MIR 2 260 -2 204 367 117 8 chr11 33451482 33451602 -115331870 - L2 LINE L2 -7 3265 3133 1385 207 83 5 chr11 33451960 33452266 -115331206 + Charlie4a DNA MER1_type 17 362 -1599 2217 121 0 0 chr11 33452266 33452563 -115330909 + AluSg SINE Alu 1 297 -13 1385 207 83 5 chr11 33452563 33452652 -115330820 + Charlie4a DNA MER1_type 362 443 -65 353 256 33 0 chr11 33452668 33452758 -115330714 - L3 LINE CR1 -572 1005 913 739 134 0 0 chr11 33452777 33452889 -115330583 - FLAM_C SINE Alu -31 112 1 1495 266 85 39 chr11 33453179 33453769 -115329703 - MLT1G LTR MaLR 0 590 11 1911 140 23 13 chr11 33453771 33454078 -115329394 + AluJb SINE Alu 3 312 0 232 185 19 0 chr11 33454448 33454502 -115328970 + L1MB7 LINE L1 6130 6184 0 619 195 16 0 chr11 33457335 33457458 -115326014 - MER45C DNA AcHobo -7 946 822 477 34 0 0 chr11 33457458 33457517 -115325955 + (TC)n Simple_repeat Simple_repeat 2 60 0 2338 281 68 32 chr11 33457517 33458296 -115325176 - MER45C DNA AcHobo -112 841 35 648 216 164 0 chr11 33458367 33458538 -115324934 - MIR SINE MIR -32 230 32 206 270 0 0 chr11 33458882 33458919 -115324553 - MIR SINE MIR -111 97 61 21 0 0 0 chr11 33461790 33461811 -115321661 + AT_rich Low_complexity Low_complexity 1 21 0 239 281 47 0 chr11 33462543 33462607 -115320865 - MIR SINE MIR -75 133 67 699 294 15 5 chr11 33464735 33464939 -115318533 + L1M3d LINE L1 414 619 -5684 1449 193 120 25 chr11 33464963 33465289 -115318183 - MLT1A1 LTR MaLR 0 365 9 500 314 113 45 chr11 33465292 33465690 -115317782 + L1M3d LINE L1 654 1078 -5225 4066 225 114 14 chr11 33465834 33466360 -115317112 + L1MB1 LINE L1 778 1250 -5132 306 0 0 0 chr11 33466360 33466394 -115317078 + (TG)n Simple_repeat Simple_repeat 2 35 0 4066 225 114 14 chr11 33466394 33467990 -115315482 + L1MB1 LINE L1 1250 3010 -3372 2221 120 0 3 chr11 33467990 33468299 -115315173 + AluSx SINE Alu 5 312 0 8481 186 21 25 chr11 33468299 33470185 -115313287 + L1MB1 LINE L1 3526 5403 -979 11120 35 5 1 chr11 33470185 33472287 -115311185 + L1PA4 LINE L1 4058 6168 0 4447 145 75 25 chr11 33472290 33472906 -115310566 + L1MB1 LINE L1 5394 5978 -426 1753 148 9 72 chr11 33472906 33473238 -115310234 + AluJo SINE Alu 1 311 -1 1562 191 0 23 chr11 33473244 33473548 -115309924 + AluJb SINE Alu 1 297 -15 4447 145 75 25 chr11 33473548 33473881 -115309591 + L1MB1 LINE L1 5982 6399 -5 44861 32 3 2 chr11 33475546 33481686 -115301786 + L1PA4 LINE L1 1 6147 -8 26 50 0 0 chr11 33481686 33481726 -115301746 + AT_rich Low_complexity Low_complexity 1 40 0 267 54 0 0 chr11 33481826 33481863 -115301609 + (TG)n Simple_repeat Simple_repeat 2 38 0 2330 107 0 0 chr11 33483036 33483335 -115300137 - AluSx SINE Alu -11 301 3 771 173 0 0 chr11 33483514 33483647 -115299825 + FLAM_C SINE Alu 1 133 0 2410 59 0 29 chr11 33484649 33484956 -115298516 - AluY SINE Alu -13 298 1 187 256 240 33 chr11 33485673 33485794 -115297678 - L3b LINE CR1 -55 1528 1383 181 364 26 0 chr11 33485807 33485884 -115297588 - L3b LINE CR1 -4 1579 1501 249 235 0 0 chr11 33486348 33486399 -115297073 + L2 LINE L2 3262 3312 -1 304 289 191 16 chr11 33486434 33486690 -115296782 + L2 LINE L2 2243 2543 -771 317 360 67 0 chr11 33486778 33486942 -115296530 + L1ME LINE L1 3599 3773 -2373 277 303 27 65 chr11 33487197 33487345 -115296127 + L1ME LINE L1 4036 4177 -1969 2621 46 0 0 chr11 33487345 33487648 -115295824 + AluY SINE Alu 1 303 -8 277 303 27 65 chr11 33487648 33487684 -115295788 + L1ME LINE L1 4177 4213 -1933 192 250 0 0 chr11 33487767 33487811 -115295661 + MIR SINE MIR 100 143 -119 607 281 84 34 chr11 33487962 33488200 -115295272 + L2 LINE L2 2712 2961 -353 487 286 50 44 chr11 33488200 33488497 -115294975 + L1ME LINE L1 5413 5711 -451 758 279 122 44 chr11 33488863 33489380 -115294092 + L2 LINE L2 2533 3086 -227 2212 106 0 3 chr11 33489381 33489673 -115293799 + AluSx SINE Alu 1 291 -21 2840 220 139 26 chr11 33489683 33490592 -115292880 + L1MC4a LINE L1 6642 7652 -156 220 250 0 0 chr11 33490636 33490692 -115292780 + L2 LINE L2 2459 2514 -800 433 278 169 75 chr11 33490923 33491272 -115292200 + L2 LINE L2 2594 2975 -339 241 215 92 0 chr11 33491406 33491471 -115292001 + L2 LINE L2 3242 3312 -1 1461 169 12 4 chr11 33493463 33493705 -115289767 - AluJb SINE Alu -14 298 55 2125 127 13 3 chr11 33494487 33494794 -115288678 - AluSx SINE Alu 0 312 3 1694 121 98 4 chr11 33495880 33496144 -115287328 + AluJo SINE Alu 8 296 -16 30 27 0 0 chr11 33497225 33497262 -115286210 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr11 33497497 33497527 -115285945 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 33501486 33501520 -115281952 + AT_rich Low_complexity Low_complexity 1 34 0 1126 125 83 6 chr11 33505437 33505605 -115277867 + AluJo SINE Alu 12 192 -120 262 304 0 0 chr11 33505622 33505691 -115277781 + GA-rich Low_complexity Low_complexity 3 71 0 620 271 77 106 chr11 33506203 33506490 -115276982 + L2 LINE L2 2705 2999 -314 2337 71 0 10 chr11 33506490 33506786 -115276686 + AluY SINE Alu 1 293 -18 620 271 77 106 chr11 33506786 33506905 -115276567 + L2 LINE L2 2999 3120 -193 1814 137 26 26 chr11 33506905 33507212 -115276260 - AluSx SINE Alu -5 307 1 620 271 77 106 chr11 33507212 33507386 -115276086 + L2 LINE L2 3120 3278 -35 537 304 83 20 chr11 33507420 33507624 -115275848 - MLT1J LTR MaLR -294 217 1 1732 154 25 0 chr11 33508694 33508973 -115274499 + AluJb SINE Alu 5 290 -22 717 287 31 12 chr11 33509600 33509858 -115273614 - MLT1J LTR MaLR -10 501 239 1733 275 145 31 chr11 33509860 33510349 -115273123 - MER115 DNA AcHobo -1 692 117 1569 191 0 53 chr11 33510349 33510477 -115272995 + AluJb SINE Alu 5 138 -174 2197 133 0 0 chr11 33510477 33510777 -115272695 + AluSg SINE Alu 1 300 -10 1569 191 0 53 chr11 33510777 33510968 -115272504 + AluJb SINE Alu 138 307 -5 1733 275 145 31 chr11 33510968 33511093 -115272379 - MER115 DNA AcHobo -576 117 8 622 321 25 8 chr11 33511100 33511340 -115272132 - MLT1J LTR MaLR -267 244 1 235 234 9 37 chr11 33511857 33511964 -115271508 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 602 184 190 19 chr11 33512319 33512477 -115270995 + MLT1J LTR MaLR 15 199 -312 241 282 42 0 chr11 33512575 33512646 -115270826 + MLT1J LTR MaLR 389 462 -49 377 322 81 0 chr11 33513381 33513530 -115269942 - MIR SINE MIR -50 212 52 568 150 92 58 chr11 33513684 33513804 -115269668 - FLAM_C SINE Alu -18 125 2 180 0 0 0 chr11 33514637 33514657 -115268815 + (CAGC)n Simple_repeat Simple_repeat 1 20 0 2331 110 3 0 chr11 33516281 33516589 -115266883 - AluSc SINE Alu 0 309 1 26 50 0 0 chr11 33516936 33516976 -115266496 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr11 33518526 33518550 -115264922 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr11 33521787 33521839 -115261633 + AT_rich Low_complexity Low_complexity 1 52 0 213 121 0 0 chr11 33524695 33524728 -115258744 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr11 33524890 33524913 -115258559 + (A)n Simple_repeat Simple_repeat 1 23 0 635 0 13 0 chr11 33529197 33529272 -115254200 + (CA)n Simple_repeat Simple_repeat 2 77 0 198 0 0 0 chr11 33532300 33532322 -115251150 + (A)n Simple_repeat Simple_repeat 1 22 0 282 29 0 0 chr11 33532776 33532811 -115250661 + (GA)n Simple_repeat Simple_repeat 1 35 0 229 341 0 0 chr11 33537312 33537400 -115246072 + G-rich Low_complexity Low_complexity 1 88 0 368 219 7 22 chr11 33537641 33537778 -115245694 + GA-rich Low_complexity Low_complexity 3 137 0 222 37 0 0 chr11 33538801 33538828 -115244644 + (TCTCC)n Simple_repeat Simple_repeat 5 31 0 22 80 0 0 chr11 33539931 33539981 -115243491 + GC_rich Low_complexity Low_complexity 1 50 0 201 133 0 0 chr11 33544207 33544237 -115239235 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 216 220 0 40 chr11 33545517 33545567 -115237905 + G-rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr11 33546516 33546540 -115236932 + GC_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr11 33547095 33547134 -115236338 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr11 33548172 33548193 -115235279 + GC_rich Low_complexity Low_complexity 1 21 0 425 50 17 0 chr11 33549783 33549843 -115233629 + (TC)n Simple_repeat Simple_repeat 2 62 0 30 45 0 0 chr11 33552553 33552597 -115230875 + GC_rich Low_complexity Low_complexity 1 44 0 218 262 0 16 chr11 33552924 33552985 -115230487 + (GCCTG)n Simple_repeat Simple_repeat 5 64 0 306 148 0 0 chr11 33554170 33554224 -115229248 + (TGGGGG)n Simple_repeat Simple_repeat 6 59 0 320 0 25 0 chr11 33556401 33556441 -115227031 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 25 31 0 0 chr11 33562023 33562055 -115221417 + GC_rich Low_complexity Low_complexity 1 32 0 360 43 0 0 chr11 33563498 33563544 -115219928 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1264 68 12 0 chr11 33563544 33563705 -115219767 - L1PA3 LINE L1 -24 6131 5969 216 0 0 0 chr11 33564506 33564530 -115218942 + (T)n Simple_repeat Simple_repeat 1 24 0 210 247 106 71 chr11 33565408 33565493 -115217979 + L3 LINE CR1 1383 1470 -107 24 0 0 0 chr11 33565602 33565626 -115217846 + AT_rich Low_complexity Low_complexity 1 24 0 204 325 0 36 chr11 33565797 33565880 -115217592 + MER5A DNA MER1_type 86 165 -24 322 234 8 109 chr11 33566023 33566151 -115217321 - MIR SINE MIR -88 174 60 1674 158 32 14 chr11 33566450 33566728 -115216744 - AluJb SINE Alu -29 283 1 633 263 78 56 chr11 33566868 33567226 -115216246 - MLT1J2 LTR MaLR 0 450 85 4851 260 190 20 chr11 33567313 33569370 -115214102 - L2 LINE L2 -680 2634 229 489 141 0 0 chr11 33569575 33569660 -115213812 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 234 62 0 0 chr11 33569660 33569692 -115213780 + (CA)n Simple_repeat Simple_repeat 1 32 0 805 249 117 30 chr11 33570024 33570367 -115213105 - L1M1 LINE L1 -302 5819 5474 274 167 0 90 chr11 33570447 33570525 -115212947 + 7SK RNA RNA 38 108 -85 334 235 52 35 chr11 33571237 33571352 -115212120 - HAL1b LINE L1 0 1348 1232 372 227 99 96 chr11 33571363 33571605 -115211867 - L1MB8 LINE L1 -245 5933 5689 279 83 0 0 chr11 33571667 33571703 -115211769 - tRNA-Gly-GGC tRNA tRNA -38 36 1 317 241 97 88 chr11 33571750 33571925 -115211547 - L1MB8 LINE L1 -2238 5570 5391 2379 90 0 3 chr11 33571925 33572235 -115211237 - AluSc SINE Alu 0 309 1 317 241 97 88 chr11 33572235 33572275 -115211197 - L1MB8 LINE L1 -2417 5391 5353 21 57 0 0 chr11 33572357 33572392 -115211080 + AT_rich Low_complexity Low_complexity 1 35 0 185 231 96 39 chr11 33573165 33573217 -115210255 - L2 LINE L2 -8 3305 3251 * 190 222 0 0 chr11 33573183 33573219 -115210253 - MIR SINE MIR -23 239 204 279 0 0 0 chr11 33573240 33573271 -115210201 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr11 33573566 33573603 -115209869 + AT_rich Low_complexity Low_complexity 1 37 0 264 30 0 0 chr11 33573767 33573800 -115209672 + (CA)n Simple_repeat Simple_repeat 1 33 0 421 232 323 24 chr11 33573827 33574081 -115209391 - L1MC4a LINE L1 -1895 5913 5584 2231 102 0 0 chr11 33574438 33574722 -115208750 + AluSx SINE Alu 9 292 -20 274 163 0 0 chr11 33574724 33574773 -115208699 + MER116 DNA Mariner 15 63 -17 381 278 0 9 chr11 33575588 33575696 -115207776 - L1ME LINE L1 -298 5823 5717 624 11 11 23 chr11 33575752 33575839 -115207633 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 1743 174 0 4 chr11 33575839 33576120 -115207352 - AluJb SINE Alu -32 280 1 2243 92 10 0 chr11 33577157 33577450 -115206022 - AluSg SINE Alu -14 296 1 611 300 131 31 chr11 33577558 33578051 -115205421 + L2 LINE L2 2729 3272 0 2556 206 55 12 chr11 33578117 33578684 -115204788 - L1MD3 LINE L1 -1 7994 7404 622 230 0 8 chr11 33578684 33578810 -115204662 - MLT1F1 LTR MaLR -442 125 1 535 210 24 24 chr11 33578816 33578940 -115204532 - L1MD3 LINE L1 -729 7266 7143 1973 153 7 10 chr11 33579004 33579312 -115204160 - AluJo SINE Alu -5 307 1 1550 138 37 0 chr11 33580649 33580917 -115202555 + L1MA8 LINE L1 6010 6287 -4 1916 138 29 0 chr11 33580998 33581301 -115202171 + AluSx SINE Alu 1 311 0 317 216 57 12 chr11 33581443 33581542 -115201930 - MIR SINE MIR -40 168 61 2317 105 3 0 chr11 33582194 33582488 -115200984 + AluSp SINE Alu 1 295 -18 514 262 159 0 chr11 33584592 33584737 -115198735 - MIR SINE MIR -48 214 47 392 178 0 69 chr11 33584891 33584992 -115198480 + LTR41 LTR ERVL 671 764 -9 229 298 115 10 chr11 33585025 33585129 -115198343 + MIR SINE MIR 20 134 -128 845 178 6 29 chr11 33585275 33585449 -115198023 + FRAM SINE Alu 1 170 -6 1998 126 10 7 chr11 33585635 33585937 -115197535 - AluSx SINE Alu -9 303 1 705 326 19 8 chr11 33586531 33586789 -115196683 + MIR SINE MIR 1 261 -1 542 129 89 0 chr11 33586950 33587051 -115196421 - L1MD3 LINE L1 0 7995 7886 233 229 77 104 chr11 33587658 33587841 -115195631 - MER5B DNA MER1_type 0 178 1 25 0 0 0 chr11 33588147 33588172 -115195300 + AT_rich Low_complexity Low_complexity 1 25 0 423 270 85 69 chr11 33589508 33589558 -115193914 - MIR SINE MIR -54 208 160 1799 216 86 25 chr11 33589558 33589727 -115193745 + MLT1D LTR MaLR 1 158 -347 2233 117 3 0 chr11 33589727 33590026 -115193446 + AluSp SINE Alu 1 300 -13 1799 216 86 25 chr11 33590026 33590332 -115193140 + MLT1D LTR MaLR 158 505 0 423 270 85 69 chr11 33590332 33590470 -115193002 - MIR SINE MIR -102 160 17 2231 187 3 3 chr11 33590680 33591044 -115192428 + MLT1A1 LTR MaLR 1 364 -1 323 242 0 0 chr11 33592091 33592157 -115191315 + L2 LINE L2 3248 3313 0 1838 161 57 29 chr11 33592629 33592978 -115190494 + MLT1A1 LTR MaLR 1 359 -6 276 323 101 42 chr11 33593179 33593396 -115190076 + L2 LINE L2 2829 3058 -214 352 267 137 0 chr11 33593741 33593872 -115189600 + LTR67 LTR ERVL 408 556 -1 657 47 0 0 chr11 33593891 33593976 -115189496 + (TA)n Simple_repeat Simple_repeat 2 86 0 2290 103 0 0 chr11 33593976 33594267 -115189205 - AluSx SINE Alu -10 302 12 390 283 75 46 chr11 33595458 33595631 -115187841 - MER5B DNA MER1_type 0 178 1 368 205 8 4 chr11 33596829 33596966 -115186506 + MER53 DNA DNA 3 189 0 922 276 161 27 chr11 33597083 33597432 -115186040 + MLT1J LTR MaLR 4 417 -94 1954 143 58 36 chr11 33597432 33597795 -115185677 + THE1C LTR MaLR 5 375 0 922 276 161 27 chr11 33597795 33597854 -115185618 + MLT1J LTR MaLR 417 467 -44 1971 136 14 3 chr11 33597868 33598163 -115185309 - AluJb SINE Alu -14 298 1 408 293 50 44 chr11 33598379 33598560 -115184912 - MER5A DNA MER1_type -1 188 7 230 260 55 14 chr11 33599489 33599562 -115183910 - L2 LINE L2 -57 3256 3181 1736 145 21 18 chr11 33599648 33599930 -115183542 + AluJo SINE Alu 1 283 -29 430 270 173 25 chr11 33599961 33600459 -115183013 - L2 LINE L2 -138 3175 2606 180 333 79 32 chr11 33600902 33601028 -115182444 - MIR SINE MIR -56 152 21 218 69 0 69 chr11 33601163 33601221 -115182251 + (TA)n Simple_repeat Simple_repeat 1 54 0 220 214 0 0 chr11 33601409 33601451 -115182021 - MIR SINE MIR -151 111 70 2042 222 110 42 chr11 33601812 33602176 -115181296 - MLT1G LTR MaLR 0 590 175 1981 131 3 3 chr11 33602176 33602466 -115181006 + AluSx SINE Alu 1 290 -22 2042 222 110 42 chr11 33602466 33602645 -115180827 - MLT1G LTR MaLR -415 175 10 289 266 118 70 chr11 33602821 33603050 -115180422 - HAL1b LINE L1 0 1348 1109 2107 128 16 3 chr11 33603116 33603422 -115180050 - AluSg SINE Alu 0 310 1 273 226 0 0 chr11 33603506 33603559 -115179913 - AluJo SINE Alu 0 308 256 1059 181 0 40 chr11 33603560 33603759 -115179713 - AluJo SINE Alu -116 196 6 419 234 84 84 chr11 33603767 33603994 -115179478 + MLT1L LTR MaLR 41 267 -348 378 67 217 0 chr11 33604044 33604104 -115179368 - MADE1 DNA Mariner 0 80 8 233 158 73 110 chr11 33604184 33604266 -115179206 + MLT1L LTR MaLR 533 611 -4 276 219 19 95 chr11 33604312 33604417 -115179055 - L1ME LINE L1 -320 5801 5705 467 298 185 0 chr11 33604609 33604814 -115178658 + MIR SINE MIR 20 262 0 1420 146 32 4 chr11 33604948 33605007 -115178465 - L1MD3 LINE L1 -10 7985 7929 2090 125 10 7 chr11 33605007 33605310 -115178162 + AluSx SINE Alu 1 304 -8 1420 146 32 4 chr11 33605310 33605496 -115177976 - L1MD3 LINE L1 -66 7929 7733 402 257 125 0 chr11 33605603 33605739 -115177733 - MIR SINE MIR -75 187 35 198 316 20 41 chr11 33606490 33606588 -115176884 - MIR SINE MIR -166 96 1 500 244 90 19 chr11 33607164 33607320 -115176152 - MIR SINE MIR 0 262 96 277 312 0 21 chr11 33607320 33607413 -115176059 + MER39 LTR ERV1 1 91 -616 387 253 0 0 chr11 33607415 33607502 -115175970 - MIR SINE MIR -170 92 6 336 320 56 8 chr11 33607839 33607964 -115175508 - L2 LINE L2 0 3272 3142 225 289 19 0 chr11 33608020 33608072 -115175400 + L2 LINE L2 3129 3181 -91 232 333 105 26 chr11 33608230 33608290 -115175182 - L2 LINE L2 -252 3061 3007 2228 105 23 0 chr11 33608290 33608594 -115174878 + AluSx SINE Alu 2 312 0 232 333 105 26 chr11 33608594 33608686 -115174786 - L2 LINE L2 -306 3007 2897 496 305 119 11 chr11 33608937 33609114 -115174358 - MIR SINE MIR -47 215 20 238 254 18 79 chr11 33609167 33609281 -115174191 - MIR SINE MIR -50 212 106 500 311 126 9 chr11 33610085 33610307 -115173165 - MIR SINE MIR 0 262 15 858 177 106 50 chr11 33610421 33610619 -115172853 + MER3 DNA MER1_type 1 209 0 195 42 0 0 chr11 33611304 33611328 -115172144 + (CTG)n Simple_repeat Simple_repeat 2 25 0 231 88 0 0 chr11 33611330 33611364 -115172108 + (TG)n Simple_repeat Simple_repeat 1 34 0 288 186 0 0 chr11 33611503 33611562 -115171910 + GA-rich Low_complexity Low_complexity 2 60 0 635 225 11 53 chr11 33611575 33611762 -115171710 - MIR SINE MIR 0 262 84 372 258 104 106 chr11 33612360 33612871 -115170601 - L1ME4a LINE L1 -15 6106 5597 727 244 76 36 chr11 33613116 33613355 -115170117 + MIR SINE MIR 8 260 -2 331 255 0 49 chr11 33613698 33613800 -115169672 - MIR SINE MIR -129 133 37 875 154 171 6 chr11 33613871 33614046 -115169426 + MER3 DNA MER1_type 2 205 -4 2122 127 0 3 chr11 33614103 33614402 -115169070 - AluSg SINE Alu -12 298 1 21 36 0 0 chr11 33614431 33614459 -115169013 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr11 33614487 33614508 -115168964 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 * 297 0 0 0 chr11 33614503 33614536 -115168936 + (TAA)n Simple_repeat Simple_repeat 2 34 0 256 326 36 88 chr11 33614845 33615038 -115168434 + L3 LINE CR1 1378 1560 -17 196 362 67 9 chr11 33615120 33615225 -115168247 + L2 LINE L2 3151 3261 -11 379 293 77 17 chr11 33615412 33615593 -115167879 - MIR SINE MIR -6 256 65 204 40 0 0 chr11 33615894 33615919 -115167553 + (TC)n Simple_repeat Simple_repeat 2 26 0 2370 89 0 10 chr11 33615919 33616221 -115167251 - AluY SINE Alu -12 299 1 529 272 113 5 chr11 33616318 33616513 -115166959 - MLT1K LTR MaLR 0 588 373 612 256 101 12 chr11 33616588 33616756 -115166716 - MER119 DNA MER1_type -396 187 5 366 328 37 0 chr11 33616849 33616983 -115166489 + MIR SINE MIR 53 191 -71 1449 225 95 27 chr11 33617103 33617547 -115165925 - MLT1J LTR MaLR 0 511 38 1509 199 24 0 chr11 33618257 33618553 -115164919 + L1MC1 LINE L1 6009 6311 -22 808 175 18 30 chr11 33619009 33619175 -115164297 + MER3 DNA MER1_type 6 122 -87 374 184 26 0 chr11 33619189 33619265 -115164207 + MER3 DNA MER1_type 128 205 -4 263 258 0 16 chr11 33619227 33619289 -115164183 - MER3 DNA MER1_type -120 89 29 * 27 0 0 0 chr11 33619853 33619880 -115163592 + AT_rich Low_complexity Low_complexity 1 27 0 491 241 53 0 chr11 33619981 33620114 -115163358 + MER103 DNA DNA 8 147 -19 1684 134 18 33 chr11 33621227 33621502 -115161970 + MER1B DNA MER1_type 1 271 -68 1898 114 0 0 chr11 33622222 33622477 -115160995 + AluSc SINE Alu 50 304 -5 255 296 34 62 chr11 33622571 33622747 -115160725 - MIR SINE MIR -72 190 20 284 327 7 47 chr11 33622788 33622938 -115160534 + MIR SINE MIR 59 202 -60 1012 230 18 51 chr11 33623721 33624020 -115159452 - L1MD3 LINE L1 0 8037 7768 995 227 4 48 chr11 33624041 33624103 -115159369 - MER58A DNA MER1_type -2196 224 161 1491 113 45 5 chr11 33624103 33624324 -115159148 + MER30 DNA MER1_type 1 230 0 995 227 4 48 chr11 33624324 33624490 -115158982 - MER58A DNA MER1_type -2259 161 6 916 201 19 48 chr11 33624502 33624523 -115158949 - L1MC4 LINE L1 -455 7587 7567 1591 147 34 101 chr11 33624523 33624687 -115158785 - AluJo SINE Alu -7 305 132 1880 133 13 47 chr11 33624687 33625004 -115158468 - AluSx SINE Alu -6 306 1 1591 147 34 101 chr11 33625004 33625048 -115158424 - AluJo SINE Alu -180 132 87 212 0 36 0 chr11 33625048 33625076 -115158396 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2226 70 0 21 chr11 33625081 33625365 -115158107 - AluY SINE Alu -33 278 1 1591 147 34 101 chr11 33625365 33625476 -115157996 - AluJo SINE Alu -229 83 1 916 201 19 48 chr11 33625476 33625663 -115157809 - L1MC4 LINE L1 -475 7567 7385 274 293 32 38 chr11 33625850 33626007 -115157465 - MIR SINE MIR 0 262 107 299 275 12 0 chr11 33626015 33626095 -115157377 + MLT1H LTR MaLR 16 96 -453 1485 218 48 73 chr11 33626105 33626642 -115156830 - MER39 LTR ERV1 0 707 1 683 281 28 51 chr11 33626645 33626898 -115156574 + MLT1H LTR MaLR 104 350 -199 408 219 31 31 chr11 33626897 33626993 -115156479 + MLT1H LTR MaLR 454 549 0 * 201 308 29 39 chr11 33626999 33627029 -115156443 - MIR SINE MIR -155 107 78 1925 108 71 31 chr11 33627029 33627354 -115156118 + MER44D DNA MER2_type 1 608 -1 201 308 29 39 chr11 33627354 33627427 -115156045 - MIR SINE MIR -184 78 5 422 307 153 5 chr11 33628124 33628339 -115155133 - MIR SINE MIR -3 259 13 2635 25 6 19 chr11 33629949 33630287 -115153185 - AluY SINE Alu 0 334 1 420 283 127 29 chr11 33631849 33632022 -115151450 + MIR SINE MIR 70 259 -3 496 285 21 38 chr11 33632186 33632372 -115151100 - MIR SINE MIR -74 188 6 1591 259 114 46 chr11 33633401 33633780 -115149692 + L2 LINE L2 2225 2577 -736 3445 52 5 23 chr11 33633780 33634223 -115149249 - L1PA7 LINE L1 0 6154 5720 1591 259 114 46 chr11 33634223 33634562 -115148910 + L2 LINE L2 2577 2892 -421 632 239 0 0 chr11 33634562 33634696 -115148776 - MER94 DNA DNA 0 134 1 1591 259 114 46 chr11 33634696 33634988 -115148484 + L2 LINE L2 2892 3306 -7 222 263 84 11 chr11 33636260 33636355 -115147117 + MIR3 SINE MIR 100 201 -7 2340 156 0 3 chr11 33636560 33636926 -115146546 - MLT1A1 LTR MaLR 0 365 1 483 296 92 5 chr11 33637074 33637270 -115146202 - MIR SINE MIR -20 242 30 216 0 0 0 chr11 33637910 33637934 -115145538 + (GTCTG)n Simple_repeat Simple_repeat 2 25 0 4019 136 36 39 chr11 33640228 33640854 -115142618 - L1MC1 LINE L1 -5 6328 5703 2281 98 0 0 chr11 33640854 33641140 -115142332 + AluSx SINE Alu 7 292 -20 4019 136 36 39 chr11 33641140 33641210 -115142262 - L1MC1 LINE L1 -630 5703 5634 1151 218 0 40 chr11 33641213 33641465 -115142007 - MSTD LTR MaLR 0 396 155 229 271 34 0 chr11 33641514 33641573 -115141899 + CT-rich Low_complexity Low_complexity 2 62 0 676 110 0 0 chr11 33641584 33641675 -115141797 - AluSq/x SINE Alu -163 150 60 1347 186 71 14 chr11 33641704 33641884 -115141588 - AluJo SINE Alu 0 312 107 456 19 0 0 chr11 33641884 33641937 -115141535 + (TG)n Simple_repeat Simple_repeat 2 54 0 1347 186 71 14 chr11 33641937 33642051 -115141421 - AluJo SINE Alu -205 107 1 1734 123 0 0 chr11 33642143 33642371 -115141101 + AluSx SINE Alu 1 228 -84 696 199 74 7 chr11 33642376 33642527 -115140945 - MLT1A2 LTR MaLR -229 161 1 2461 212 83 74 chr11 33642528 33642959 -115140513 - L1MC5 LINE L1 -435 7526 7100 17373 35 1 0 chr11 33642959 33645777 -115137695 + L1PA4 LINE L1 3326 6152 -3 2461 212 83 74 chr11 33645777 33645793 -115137679 - L1MC5 LINE L1 -861 7100 7086 1476 205 25 21 chr11 33645793 33646076 -115137396 + AluJb SINE Alu 1 284 -28 1188 0 0 0 chr11 33646076 33646208 -115137264 + (GGAAA)n Simple_repeat Simple_repeat 3 134 0 2461 212 83 74 chr11 33646208 33646826 -115136646 - L1MC5 LINE L1 -874 7087 6430 5405 96 4 3 chr11 33648166 33648918 -115134554 - L1PA14 LINE L1 -3 6158 5406 864 272 85 35 chr11 33649208 33649550 -115133922 - MLT1I LTR MaLR -22 387 29 206 327 89 0 chr11 33650636 33650737 -115132735 - MIR SINE MIR -69 139 30 634 322 5 0 chr11 33651226 33651434 -115132038 + MIR SINE MIR 18 226 -36 2163 116 0 0 chr11 33651457 33651784 -115131688 - AluSx SINE Alu 0 327 1 319 317 19 0 chr11 33651927 33652031 -115131441 - MIR3 SINE MIR -15 193 88 1204 223 26 21 chr11 33652465 33652935 -115130537 - MLT1H1 LTR MaLR -2 553 30 519 288 38 6 chr11 33653381 33653541 -115129931 - MIR SINE MIR -29 233 69 1054 230 19 55 chr11 33653546 33653907 -115129565 - L2 LINE L2 -3 3310 2963 504 330 22 0 chr11 33654014 33654199 -115129273 - MER5A DNA MER1_type 0 189 1 246 250 28 14 chr11 33654437 33654509 -115128963 + MIR SINE MIR 47 119 -143 623 295 44 20 chr11 33655261 33655512 -115127960 - MIR SINE MIR 0 262 6 1793 163 14 7 chr11 33655696 33655991 -115127481 - AluJo SINE Alu -15 297 1 346 326 37 0 chr11 33657520 33657655 -115125817 + MIR SINE MIR 8 147 -115 223 276 138 11 chr11 33657725 33657812 -115125660 + MIR SINE MIR 150 247 -15 1801 163 0 3 chr11 33657929 33658283 -115125189 - AluJb SINE Alu 0 353 1 592 241 185 14 chr11 33659334 33659686 -115123786 - L1ME4a LINE L1 -4 6117 5706 363 247 11 0 chr11 33659857 33659946 -115123526 - L1ME4a LINE L1 -457 5664 5575 715 252 146 38 chr11 33660159 33660583 -115122889 - MLT1K LTR MaLR -4 472 3 234 160 11 213 chr11 33660875 33660969 -115122503 - L2 LINE L2 0 3313 3239 243 192 115 0 chr11 33661570 33661622 -115121850 - L2 LINE L2 -1 3312 3255 2041 141 46 32 chr11 33661677 33662047 -115121425 + THE1C LTR MaLR 1 375 0 621 249 46 5 chr11 33662230 33662427 -115121045 + MIR SINE MIR 46 250 -12 312 291 94 71 chr11 33662524 33662906 -115120566 - L2 LINE L2 0 3313 2923 268 277 24 12 chr11 33662970 33663053 -115120419 + MER117 DNA MER1_type 114 197 0 2483 70 0 7 chr11 33663263 33663564 -115119908 + AluSq SINE Alu 1 299 -14 2317 96 0 16 chr11 33664556 33664859 -115118613 + AluSq SINE Alu 1 298 -15 342 0 0 0 chr11 33665239 33665277 -115118195 + (CA)n Simple_repeat Simple_repeat 2 39 0 1286 171 24 20 chr11 33665438 33665684 -115117788 - L1PA16 LINE L1 -1 6165 5919 219 152 0 0 chr11 33665684 33665730 -115117742 + CT-rich Low_complexity Low_complexity 2 47 0 247 298 23 117 chr11 33666036 33666335 -115117137 + L2 LINE L2 2920 3190 -82 1178 181 0 14 chr11 33666362 33666572 -115116900 + MER3 DNA MER1_type 3 209 0 563 319 46 17 chr11 33666773 33667011 -115116461 + MIR SINE MIR 8 252 -10 262 270 0 54 chr11 33667026 33667100 -115116372 - L2 LINE L2 0 3272 3203 464 188 12 0 chr11 33668078 33668158 -115115314 - MIR3 SINE MIR -3 205 125 539 308 114 54 chr11 33668333 33668667 -115114805 + L2 LINE L2 2914 3267 -5 180 333 60 36 chr11 33668676 33668760 -115114712 - L2 LINE L2 -36 3236 3151 805 123 39 23 chr11 33668913 33669043 -115114429 + AluJb SINE Alu 5 136 -176 323 364 38 0 chr11 33669247 33669379 -115114093 - MIR3 SINE MIR -14 194 58 1933 133 0 0 chr11 33670170 33670455 -115113017 - AluSx SINE Alu -21 291 7 296 298 99 25 chr11 33670486 33670607 -115112865 - L2 LINE L2 -5 3267 3138 355 295 205 19 chr11 33671150 33671306 -115112166 - MIR SINE MIR -6 256 72 1531 263 79 8 chr11 33671612 33672252 -115111220 - L1ME3A LINE L1 -219 5951 5249 1949 181 13 16 chr11 33672252 33672628 -115110844 - THE1C LTR MaLR 0 375 1 1531 263 79 8 chr11 33672628 33672695 -115110777 - L1ME3A LINE L1 -921 5249 5188 1010 140 55 0 chr11 33672702 33672866 -115110606 - AluSg/x SINE Alu -8 302 130 2116 117 0 0 chr11 33672916 33673215 -115110257 + AluSq SINE Alu 1 299 -14 1155 271 92 40 chr11 33673225 33674064 -115109408 - L1MC4 LINE L1 -16 8026 3652 747 265 144 74 chr11 33674098 33674569 -115108903 - MLT1H1 LTR MaLR 0 555 52 292 196 139 12 chr11 33674576 33674680 -115108792 - AluJ/FLAM SINE Alu -206 96 54 250 262 16 0 chr11 33674681 33674742 -115108730 - MLT1H1 LTR MaLR -505 62 1 516 303 9 14 chr11 33674747 33674965 -115108507 - L1MC4 LINE L1 -2498 3648 3432 1718 226 34 18 chr11 33674980 33675360 -115108112 - MER70B LTR ERVL -192 386 1 268 302 93 0 chr11 33675406 33675492 -115107980 + L2 LINE L2 3142 3235 -37 334 280 76 15 chr11 33675560 33675692 -115107780 - L2 LINE L2 -207 3065 2926 2589 118 3 3 chr11 33675721 33676085 -115107387 - THE1B LTR MaLR 0 364 1 384 176 0 40 chr11 33676100 33676174 -115107298 + L2 LINE L2 3202 3272 0 2878 184 5 43 chr11 33676244 33676699 -115106773 - MER74A LTR ERVL 0 558 128 2303 81 0 0 chr11 33676699 33676994 -115106478 - AluSg SINE Alu -15 295 1 2878 184 5 43 chr11 33676994 33677115 -115106357 - MER74A LTR ERVL -430 128 4 340 261 0 0 chr11 33677254 33677319 -115106153 - L2 LINE L2 0 3272 3208 472 250 100 0 chr11 33678273 33678413 -115105059 - MIR SINE MIR -6 256 103 582 158 10 0 chr11 33679081 33679213 -115104259 + AluY SINE Alu 183 315 0 1239 272 17 36 chr11 33679449 33679806 -115103666 + MLT1J LTR MaLR 3 352 -159 306 148 0 0 chr11 33680269 33680323 -115103149 + (CCCCCA)n Simple_repeat Simple_repeat 6 59 0 22 35 0 0 chr11 33683312 33683341 -115100131 + GC_rich Low_complexity Low_complexity 1 29 0 233 101 58 43 chr11 33683501 33683570 -115099902 + (GGGTG)n Simple_repeat Simple_repeat 5 74 0 573 160 0 0 chr11 33683574 33683718 -115099754 + G-rich Low_complexity Low_complexity 1 144 0 242 218 51 13 chr11 33683731 33683809 -115099663 + G-rich Low_complexity Low_complexity 2 82 0 866 214 60 48 chr11 33685782 33686034 -115097438 + MIR SINE MIR 8 262 0 24 0 0 0 chr11 33687741 33687765 -115095707 + GC_rich Low_complexity Low_complexity 1 24 0 448 251 21 47 chr11 33688210 33688401 -115095071 + L2 LINE L2 2871 3056 -257 293 286 114 0 chr11 33688891 33688996 -115094476 - MER91C DNA MER1_type -23 117 1 1613 138 71 79 chr11 33689303 33689681 -115093791 - THE1C LTR MaLR 0 375 1 292 296 56 37 chr11 33690890 33690998 -115092474 + MER5C DNA MER1_type 1 110 -214 369 296 0 40 chr11 33691003 33691155 -115092317 - L1ME LINE L1 -545 5619 5474 2315 135 0 11 chr11 33691162 33691525 -115091947 - L1PB1 LINE L1 -10 6141 5783 226 233 0 0 chr11 33691670 33691713 -115091759 + GA-rich Low_complexity Low_complexity 2 44 0 454 298 77 17 chr11 33692014 33692195 -115091277 + MIR SINE MIR 65 256 -6 231 362 67 9 chr11 33692382 33692487 -115090985 - L2 LINE L2 -11 3261 3151 319 332 36 87 chr11 33692566 33692762 -115090710 - L3 LINE CR1 -14 1563 1378 324 0 0 0 chr11 33693071 33693107 -115090365 + (TTA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 33693147 33693175 -115090297 + AT_rich Low_complexity Low_complexity 1 28 0 2167 110 0 0 chr11 33693204 33693496 -115089976 + AluSx SINE Alu 1 292 -20 265 163 0 0 chr11 33693498 33693547 -115089925 + MER116 DNA Mariner 15 63 -17 371 278 0 9 chr11 33694362 33694470 -115089002 - L1ME LINE L1 -298 5823 5717 1686 189 0 3 chr11 33694526 33694878 -115088594 - AluJb SINE Alu 0 351 1 1398 117 0 0 chr11 33695354 33695550 -115087922 + AluSx SINE Alu 33 228 -84 691 199 74 7 chr11 33695555 33695706 -115087766 - MLT1A2 LTR MaLR -229 161 1 1443 185 116 41 chr11 33695707 33696145 -115087327 - L1MC5 LINE L1 -435 7526 7056 * 16507 32 4 8 chr11 33696138 33699004 -115084468 + L1PA4 LINE L1 3326 6178 0 24 32 0 0 chr11 33700448 33700479 -115082993 + GC_rich Low_complexity Low_complexity 1 31 0 2079 87 11 0 chr11 33700853 33701139 -115082333 - AluY SINE Alu -22 289 1 12921 197 22 19 chr11 33701296 33705265 -115078207 + L1PBa LINE L1 1488 5557 -1305 221 30 61 0 chr11 33706344 33706377 -115077095 + A-rich Low_complexity Low_complexity 1 35 0 544 253 52 23 chr11 33706413 33706587 -115076885 - MIR SINE MIR -58 204 26 296 286 125 9 chr11 33706669 33706781 -115076691 + MIR3 SINE MIR 63 187 -21 1166 240 29 0 chr11 33707693 33707939 -115075533 + MIR SINE MIR 10 262 0 377 251 235 22 chr11 33709299 33709482 -115073990 + MIR SINE MIR 29 250 -12 337 248 248 37 chr11 33709784 33709945 -115073527 + MIR SINE MIR 51 245 -17 2014 202 60 24 chr11 33710210 33710676 -115072796 - MLT1D LTR MaLR 0 505 23 3946 165 27 6 chr11 33711576 33712286 -115071186 - L1MB2 LINE L1 0 6171 5447 301 221 86 114 chr11 33712294 33712434 -115071038 - L1ME4a LINE L1 0 6121 5986 475 301 27 21 chr11 33712447 33712633 -115070839 - L1MC4a LINE L1 -1894 5914 5728 962 272 14 5 chr11 33712664 33712881 -115070591 + MIR SINE MIR 1 219 -43 281 194 51 41 chr11 33712919 33712978 -115070494 - L1MC4a LINE L1 -422 5699 5637 478 146 19 39 chr11 33712978 33713081 -115070391 - L1PA12 LINE L1 0 6168 6068 281 194 51 41 chr11 33713081 33713119 -115070353 - L1MC4a LINE L1 -484 5637 5601 456 268 162 32 chr11 33713733 33714017 -115069455 - L1ME4a LINE L1 -4 6117 5797 285 234 160 21 chr11 33714085 33714179 -115069293 + MIR3 SINE MIR 9 115 -93 2175 87 0 0 chr11 33714242 33714528 -115068944 + AluSx SINE Alu 20 305 -7 295 225 207 18 chr11 33714985 33715096 -115068376 + MIR3 SINE MIR 39 170 -38 211 338 13 13 chr11 33715103 33715180 -115068292 - L2 LINE L2 0 3272 3196 190 250 54 0 chr11 33715191 33715247 -115068225 - MIR SINE MIR -10 252 194 288 80 73 44 chr11 33715249 33715386 -115068086 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 731 258 26 26 chr11 33715405 33715595 -115067877 - MIR SINE MIR -61 201 12 688 288 111 4 chr11 33715642 33715868 -115067604 - MIR SINE MIR -12 250 1 287 321 15 0 chr11 33716392 33716523 -115066949 + (TGAA)n Simple_repeat Simple_repeat 3 135 0 521 316 109 0 chr11 33719036 33719229 -115064243 - MIR SINE MIR -34 228 15 306 306 75 37 chr11 33719245 33719379 -115064093 - MIR3 SINE MIR -6 202 64 367 217 59 86 chr11 33719757 33719909 -115063563 + MIR3 SINE MIR 7 154 -54 4793 47 10 7 chr11 33720129 33721115 -115062357 - SVA Other Other -955 1386 32 1602 203 3 16 chr11 33772240 33772556 -115010916 - AluJo SINE Alu 0 312 1 2043 131 7 0 chr11 33772585 33772883 -115010589 + AluSx SINE Alu 1 300 -12 26 0 0 0 chr11 33772961 33772987 -115010485 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 33773780 33773801 -115009671 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 33774744 33774781 -115008691 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 33775980 33776001 -115007471 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 33776563 33776584 -115006888 + AT_rich Low_complexity Low_complexity 1 21 0 3590 155 29 7 chr11 33777641 33777909 -115005563 - L1MA8 LINE L1 -373 5918 5657 5528 142 124 9 chr11 33777909 33779013 -115004459 + Tigger3b DNA MER2_type 1 1231 0 3590 155 29 7 chr11 33779013 33779484 -115003988 - L1MA8 LINE L1 -634 5657 5164 22 35 0 0 chr11 33779587 33779616 -115003856 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr11 33779827 33779854 -115003618 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr11 33781360 33781381 -115002091 + AT_rich Low_complexity Low_complexity 1 21 0 1335 158 38 0 chr11 33781744 33781953 -115001519 + AluJo SINE Alu 3 219 -93 242 98 235 0 chr11 33781998 33782049 -115001423 + MER3 DNA MER1_type 147 209 0 * 444 203 0 0 chr11 33782049 33782096 -115001376 - MER3 DNA MER1_type -162 47 1 593 261 100 54 chr11 33782362 33782568 -115000904 + HAL1b LINE L1 344 568 -780 2213 69 7 16 chr11 33782568 33782871 -115000601 - AluY SINE Alu -11 300 1 593 261 100 54 chr11 33782871 33782944 -115000528 + HAL1b LINE L1 568 636 -712 344 253 25 0 chr11 33783035 33783114 -115000358 + L2 LINE L2 3177 3257 -56 846 257 64 55 chr11 33783151 33783638 -114999834 + HAL1b LINE L1 658 1148 -200 323 278 198 0 chr11 33784017 33784179 -114999293 - L1MC4a LINE L1 -1882 5926 5733 408 231 71 101 chr11 33784240 33784478 -114998994 - L1MC4a LINE L1 -529 5633 5403 30 0 0 0 chr11 33784512 33784542 -114998930 + AT_rich Low_complexity Low_complexity 1 30 0 2000 139 0 0 chr11 33784632 33784919 -114998553 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr11 33784919 33784956 -114998516 + AT_rich Low_complexity Low_complexity 1 37 0 234 163 113 62 chr11 33785802 33785882 -114997590 + L2 LINE L2 3121 3204 -109 807 175 34 178 chr11 33785893 33786032 -114997440 + MIR SINE MIR 2 130 -132 377 22 0 0 chr11 33786032 33786078 -114997394 - MADE1 DNA Mariner -34 46 1 807 175 34 178 chr11 33786078 33786185 -114997287 + MIR SINE MIR 130 251 -11 246 261 14 14 chr11 33786210 33786279 -114997193 + L2 LINE L2 3230 3298 -15 3858 189 52 35 chr11 33786317 33786497 -114996975 + L1MB7 LINE L1 4958 5134 -1050 1939 174 97 5 chr11 33786497 33786889 -114996583 - MSTA LTR MaLR 0 428 1 3858 189 52 35 chr11 33786889 33787057 -114996415 + L1MB7 LINE L1 5134 5298 -886 2300 98 3 0 chr11 33787057 33787353 -114996119 + AluY SINE Alu 1 297 -14 3858 189 52 35 chr11 33787353 33788172 -114995300 + L1MB7 LINE L1 5298 6163 -21 1360 143 14 0 chr11 33788191 33788400 -114995072 + AluJo SINE Alu 1 212 -100 354 155 52 0 chr11 33788411 33788527 -114994945 + (TA)n Simple_repeat Simple_repeat 1 122 0 678 280 39 58 chr11 33789054 33789156 -114994316 - MIR SINE MIR -8 254 152 1655 161 40 15 chr11 33789156 33789459 -114994013 - AluJb SINE Alu 0 310 1 678 280 39 58 chr11 33789459 33789611 -114993861 - MIR SINE MIR -110 152 3 2253 77 0 7 chr11 33792036 33792323 -114991149 + AluSg1 SINE Alu 1 285 -24 201 311 54 14 chr11 33792376 33792450 -114991022 + L2 LINE L2 3182 3258 -55 1414 264 91 27 chr11 33792695 33793244 -114990228 + L1MC4a LINE L1 5256 5839 -1969 1850 99 20 0 chr11 33793527 33793779 -114989693 - AluSq SINE Alu -56 257 1 2354 103 0 0 chr11 33793859 33794169 -114989303 - AluSg SINE Alu 0 310 1 1725 188 6 16 chr11 33794413 33794727 -114988745 - AluJb SINE Alu -1 311 1 610 289 171 11 chr11 33794794 33795081 -114988391 + L2 LINE L2 2980 3312 -1 369 0 0 0 chr11 33795399 33795440 -114988032 + (CA)n Simple_repeat Simple_repeat 2 42 0 1679 132 126 26 chr11 33795449 33795790 -114987682 - THE1C LTR MaLR 0 375 1 357 120 0 0 chr11 33795797 33795847 -114987625 - 5S rRNA rRNA -71 50 1 224 283 109 0 chr11 33796556 33796648 -114986824 - MIR SINE MIR -63 199 98 24 53 0 0 chr11 33797318 33797356 -114986116 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 33798266 33798292 -114985180 + AT_rich Low_complexity Low_complexity 1 26 0 394 275 58 82 chr11 33800775 33800982 -114982490 - MIR SINE MIR -4 258 57 198 303 15 0 chr11 33801129 33801195 -114982277 + MIR SINE MIR 87 153 -55 363 346 112 5 chr11 33801655 33801843 -114981629 - MIR SINE MIR -35 227 20 24 0 0 0 chr11 33802327 33802351 -114981121 + AT_rich Low_complexity Low_complexity 1 24 0 1581 180 16 74 chr11 33802783 33803161 -114980311 + MLT1A2 LTR MaLR 3 358 -16 745 217 56 123 chr11 33803161 33803552 -114979920 - MLT1A1 LTR MaLR 0 365 1 555 304 8 39 chr11 33803751 33804011 -114979461 - HERVFH21 LTR ERV1 -346 6183 5932 517 31 0 0 chr11 33804005 33804070 -114979402 - HERVFH21 LTR ERV1 -1815 4714 4650 * 6247 185 38 30 chr11 33804074 33805559 -114977913 - HERVFH21 LTR ERV1 -3744 2785 1290 1557 156 3 54 chr11 33805669 33805964 -114977508 + AluJb SINE Alu 17 296 -16 1722 125 45 0 chr11 33806258 33806545 -114976927 - L1PA16 LINE L1 -4 6162 5863 819 269 72 75 chr11 33806717 33807065 -114976407 + L2 LINE L2 2364 2712 -602 937 214 35 0 chr11 33807065 33807266 -114976206 + MER3 DNA MER1_type 2 209 0 819 269 72 75 chr11 33807266 33807400 -114976072 + L2 LINE L2 2712 2845 -469 830 313 79 34 chr11 33807569 33808070 -114975402 - L2 LINE L2 -24 3289 2765 21 0 0 0 chr11 33808070 33808091 -114975381 + AT_rich Low_complexity Low_complexity 1 21 0 228 371 89 5 chr11 33808117 33808319 -114975153 - L2 LINE L2 -1833 1481 1263 189 293 114 49 chr11 33808372 33808495 -114974977 - L2 LINE L2 -2190 1124 994 212 322 28 79 chr11 33808629 33808843 -114974629 - L2 LINE L2 -2654 660 458 292 204 0 97 chr11 33809232 33809325 -114974147 - MER103 DNA DNA -9 157 74 391 211 30 45 chr11 33809476 33809609 -114973863 + HAL1b LINE L1 1200 1330 -18 2136 105 24 7 chr11 33809615 33809909 -114973563 - AluSx SINE Alu -13 299 1 25 31 0 0 chr11 33810036 33810068 -114973404 + AT_rich Low_complexity Low_complexity 1 32 0 2858 213 230 23 chr11 33810111 33811111 -114972361 + L1MC4 LINE L1 6749 8037 -5 184 232 36 36 chr11 33811300 33811356 -114972116 + MIR SINE MIR 206 261 -1 367 285 87 35 chr11 33811817 33811989 -114971483 - MIR SINE MIR -1 261 81 3923 178 62 56 chr11 33812000 33813501 -114969971 + L1MB2 LINE L1 4662 6171 0 3191 182 44 40 chr11 33813648 33814121 -114969351 + L1MB8 LINE L1 5423 5902 -276 1097 218 17 114 chr11 33814121 33814525 -114968947 - MLT1A1 LTR MaLR 0 365 1 3191 182 44 40 chr11 33814525 33814804 -114968668 + L1MB8 LINE L1 5902 6178 0 1091 281 92 16 chr11 33814807 33815230 -114968242 - L2 LINE L2 -1378 1936 1482 1529 194 26 80 chr11 33815257 33815562 -114967910 - MLT1A1 LTR MaLR 0 365 84 1469 106 23 0 chr11 33815562 33815779 -114967693 - L1PA13 LINE L1 0 6163 5942 1529 194 26 80 chr11 33815779 33815859 -114967613 - MLT1A1 LTR MaLR -281 84 1 1722 254 183 29 chr11 33815859 33816576 -114966896 - L2 LINE L2 -1866 1448 622 433 301 6 64 chr11 33817309 33817482 -114965990 - MIR3 SINE MIR -1 207 45 364 325 12 31 chr11 33817777 33817937 -114965535 + MIR SINE MIR 20 176 -86 1836 133 22 0 chr11 33818350 33818628 -114964844 + AluSq SINE Alu 1 284 -29 1002 105 0 0 chr11 33818628 33818664 -114964808 + AluSx SINE Alu 1 314 0 23 0 0 0 chr11 33818668 33818691 -114964781 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr11 33818953 33818992 -114964480 + AT_rich Low_complexity Low_complexity 1 39 0 689 253 35 5 chr11 33819186 33819384 -114964088 - MER3 DNA MER1_type -4 205 2 959 184 0 6 chr11 33819568 33819736 -114963736 - AluJo SINE Alu -25 287 121 346 325 64 64 chr11 33820006 33820286 -114963186 + HAL1 LINE L1 329 608 -1899 591 273 100 35 chr11 33820441 33820760 -114962712 + HAL1 LINE L1 751 1090 -1417 779 260 91 9 chr11 33820878 33821097 -114962375 - MIR SINE MIR -21 241 5 1719 183 3 3 chr11 33821121 33821422 -114962050 + AluJb SINE Alu 1 301 -11 1345 268 157 39 chr11 33821493 33822246 -114961226 + HAL1 LINE L1 1328 2169 -338 1430 136 0 26 chr11 33822292 33822520 -114960952 + AluJb SINE Alu 82 303 -9 201 286 0 0 chr11 33822527 33822590 -114960882 + GA-rich Low_complexity Low_complexity 2 64 0 37336 70 5 3 chr11 33823230 33828981 -114954491 - L1PA5 LINE L1 -3 6151 395 420 307 0 0 chr11 33829188 33829302 -114954170 + MLT1A2 LTR MaLR 1 114 -260 342 324 0 0 chr11 33829306 33829408 -114954064 + MLT1A2 LTR MaLR 13 114 -260 1495 240 11 45 chr11 33829412 33829791 -114953681 + MLT1A2 LTR MaLR 9 374 0 728 114 0 9 chr11 33829791 33829905 -114953567 + MLT1A2-int LTR MaLR 1 113 -1258 573 260 88 11 chr11 33829914 33830095 -114953377 + L1ME1 LINE L1 5960 6154 -12 1832 141 0 27 chr11 33830160 33830457 -114953015 - AluJo SINE Alu -23 289 1 195 42 0 0 chr11 33830552 33830576 -114952896 + (TAGA)n Simple_repeat Simple_repeat 1 24 0 7605 109 36 3 chr11 33830851 33832006 -114951466 + Tigger1 DNA MER2_type 771 1964 -454 5204 160 34 44 chr11 33832006 33832077 -114951395 - L1PA16 LINE L1 -2 6164 6094 2350 101 0 0 chr11 33832077 33832384 -114951088 + AluSg SINE Alu 1 307 -3 5204 160 34 44 chr11 33832384 33832397 -114951075 - L1PA16 LINE L1 -72 6094 6082 2121 109 0 32 chr11 33832397 33832708 -114950764 + AluSx SINE Alu 1 301 -11 5204 160 34 44 chr11 33832708 33833442 -114950030 - L1PA16 LINE L1 -84 6082 5342 1671 128 97 0 chr11 33833442 33833699 -114949773 - AluSx SINE Alu -23 289 8 5204 160 34 44 chr11 33833699 33834060 -114949412 - L1PA16 LINE L1 -824 5342 4979 2321 119 0 0 chr11 33834060 33834372 -114949100 - AluSx SINE Alu 0 312 1 5204 160 34 44 chr11 33834372 33835107 -114948365 - L1PA16 LINE L1 -1187 4979 4252 2359 127 124 5 chr11 33835109 33835527 -114947945 + Tigger1 DNA MER2_type 1950 2417 -1 1648 250 66 73 chr11 33835570 33835942 -114947530 + HsTC2a DNA Tc2 4 370 -1530 1465 75 5 16 chr11 33835942 33836129 -114947343 + AluSp SINE Alu 1 185 -128 1648 250 66 73 chr11 33836129 33836497 -114946975 + HsTC2a DNA Tc2 370 739 -5 1758 147 4 4 chr11 33836804 33837076 -114946396 - AluSx SINE Alu -17 295 24 7179 48 8 0 chr11 33837143 33838795 -114944677 + L1PA5 LINE L1 4495 6154 0 2064 128 3 7 chr11 33841431 33841735 -114941737 + AluSq SINE Alu 1 303 -10 1459 165 56 25 chr11 33842131 33842416 -114941056 - MER7A DNA MER2_type -54 292 1 211 265 20 27 chr11 33842421 33842568 -114940904 + (TATAA)n Simple_repeat Simple_repeat 5 150 0 25 31 0 0 chr11 33843199 33843231 -114940241 + AT_rich Low_complexity Low_complexity 1 32 0 2218 100 3 10 chr11 33843279 33843580 -114939892 - AluSp SINE Alu -14 299 1 231 350 25 12 chr11 33844555 33844635 -114938837 - MIR SINE MIR -150 112 32 1715 140 24 86 chr11 33848428 33848800 -114934672 + L1MA9 LINE L1 5959 6307 -5 3105 131 78 0 chr11 33848889 33849378 -114934094 - MER1A DNA MER1_type 0 527 1 1493 249 41 61 chr11 33849396 33849436 -114934036 - MLT2B1 LTR ERVL 0 520 481 390 21 0 0 chr11 33849436 33849483 -114933989 + (TG)n Simple_repeat Simple_repeat 1 47 0 1493 249 41 61 chr11 33849483 33849931 -114933541 - MLT2B1 LTR ERVL -39 481 42 2195 264 169 34 chr11 33849967 33851154 -114932318 - L2 LINE L2 -37 3276 1925 451 247 0 45 chr11 33851465 33851557 -114931915 - L1MA10 LINE L1 0 6334 6250 7657 129 31 6 chr11 33851557 33852825 -114930647 + HSMAR2 DNA Mariner 1 1301 -1 451 247 0 45 chr11 33852825 33852886 -114930586 - L1MA10 LINE L1 -84 6250 6188 44064 38 4 1 chr11 33853055 33859189 -114924283 - L1PA3 LINE L1 0 6155 2 3676 256 63 66 chr11 33859189 33859610 -114923862 - L1MEc LINE L1 -4632 1764 1343 2157 84 0 0 chr11 33859610 33859885 -114923587 + AluY SINE Alu 30 304 -7 3676 256 63 66 chr11 33859885 33861187 -114922285 - L1MEc LINE L1 -5053 1343 46 21 36 0 0 chr11 33861562 33861590 -114921882 + AT_rich Low_complexity Low_complexity 1 28 0 800 132 7 29 chr11 33862580 33862716 -114920756 + FLAM_C SINE Alu 1 133 0 2234 43 43 7 chr11 33863737 33864017 -114919455 - AluY SINE Alu -21 290 1 248 290 130 7 chr11 33864118 33864256 -114919216 + L1ME1 LINE L1 3517 3671 -2475 586 247 36 10 chr11 33864300 33864494 -114918978 + L1ME1 LINE L1 3572 3770 -2376 22 35 0 0 chr11 33864502 33864531 -114918941 + AT_rich Low_complexity Low_complexity 1 29 0 527 242 51 13 chr11 33864567 33864724 -114918748 + L1ME1 LINE L1 3983 4145 -2001 310 185 27 71 chr11 33864769 33864953 -114918519 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 202 54 27 27 chr11 33864991 33865028 -114918444 + (CTATA)n Simple_repeat Simple_repeat 2 38 0 1308 210 81 73 chr11 33865032 33865351 -114918121 + L1ME1 LINE L1 4320 4635 -1531 2179 109 143 8 chr11 33865351 33865728 -114917744 + MSTA LTR MaLR 1 428 0 1308 210 81 73 chr11 33865728 33866550 -114916922 + L1ME1 LINE L1 4635 5576 -590 1896 161 0 0 chr11 33866550 33866858 -114916614 + AluSx SINE Alu 3 310 0 1308 210 81 73 chr11 33866858 33867117 -114916355 + L1ME1 LINE L1 5576 5831 -335 272 197 16 33 chr11 33867167 33867228 -114916244 + MER2 DNA MER2_type 25 84 -261 974 186 67 105 chr11 33867279 33867559 -114915913 + L1ME1 LINE L1 5830 6096 -70 1474 207 0 11 chr11 33867559 33867844 -114915628 + AluJo SINE Alu 6 287 -25 974 186 67 105 chr11 33867844 33867907 -114915565 + L1ME1 LINE L1 6096 6160 -6 23 92 0 0 chr11 33868440 33868505 -114914967 + AT_rich Low_complexity Low_complexity 1 65 0 223 312 86 99 chr11 33868841 33868904 -114914568 + L2 LINE L2 2427 2489 -825 240 35 0 0 chr11 33868904 33868933 -114914539 + (CA)n Simple_repeat Simple_repeat 1 29 0 223 312 86 99 chr11 33868933 33869064 -114914408 + L2 LINE L2 2489 2619 -695 2267 46 3 7 chr11 33869064 33869346 -114914126 + AluY SINE Alu 1 320 0 263 0 26 26 chr11 33869346 33869385 -114914087 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 223 312 86 99 chr11 33869385 33869512 -114913960 + L2 LINE L2 2619 2746 -568 2388 59 0 34 chr11 33869512 33869833 -114913639 + AluY SINE Alu 1 310 -1 1647 170 46 7 chr11 33869837 33870123 -114913349 + L1PB4 LINE L1 5830 6119 -47 2266 107 0 19 chr11 33870123 33870441 -114913031 + AluSq SINE Alu 1 312 -1 1647 170 46 7 chr11 33870441 33870490 -114912982 + L1PB4 LINE L1 6119 6165 -1 449 223 121 70 chr11 33871032 33871189 -114912283 + MIR SINE MIR 97 261 -1 485 333 140 38 chr11 33871194 33871902 -114911570 + L2 LINE L2 2458 3268 -4 840 306 128 10 chr11 33872198 33872597 -114910875 + L3 LINE CR1 929 1374 -203 193 352 82 15 chr11 33872613 33872809 -114910663 + L2 LINE L2 1863 2071 -1243 341 267 35 0 chr11 33873982 33874068 -114909404 - MIR SINE MIR -3 259 171 459 96 68 0 chr11 33874068 33874141 -114909331 - Alu SINE Alu -15 296 219 360 335 89 23 chr11 33874305 33874562 -114908910 + L2 LINE L2 2221 2494 -820 193 375 56 26 chr11 33875192 33875461 -114908011 - L2 LINE L2 -353 2961 2685 574 158 10 0 chr11 33975570 33975702 -114807770 + AluY SINE Alu 183 315 0 1698 255 31 31 chr11 33975938 33976425 -114807047 + MLT1J LTR MaLR 3 489 -22 2434 77 3 0 chr11 33976459 33976757 -114806715 - AluY SINE Alu -12 299 1 240 234 78 13 chr11 33976979 33977056 -114806416 + MIR SINE MIR 71 152 -110 705 211 25 6 chr11 33977123 33977284 -114806188 + MIR3 SINE MIR 37 200 -8 765 245 0 69 chr11 33977336 33977552 -114805920 - MER63A DNA MER1_type -8 202 2 397 229 48 0 chr11 33978175 33978280 -114805192 + MER103 DNA DNA 6 115 -51 15513 189 23 17 chr11 33978496 33983951 -114799521 + L1P5 LINE L1 735 6494 -373 244 109 43 0 chr11 33983951 33983997 -114799475 + LTR66 LTR ERVL 392 439 -171 280 281 0 0 chr11 33984013 33984102 -114799370 + L1MC4 LINE L1 6614 6702 -1340 2358 135 0 11 chr11 33984105 33984468 -114799004 + L1PB1 LINE L1 5783 6141 -10 384 296 0 40 chr11 33984475 33984627 -114798845 + L1ME LINE L1 5474 5619 -545 246 296 56 37 chr11 33984632 33984740 -114798732 - MER5C DNA MER1_type -214 110 1 1671 138 72 75 chr11 33985950 33986326 -114797146 + THE1C LTR MaLR 1 375 0 297 267 114 0 chr11 33986633 33986738 -114796734 - MER91C DNA MER1_type 0 140 24 394 255 21 52 chr11 33987229 33987421 -114796051 - L2 LINE L2 -257 3056 2871 221 30 61 0 chr11 33988519 33988552 -114794920 + A-rich Low_complexity Low_complexity 1 35 0 479 259 46 17 chr11 33988588 33988762 -114794710 - MIR SINE MIR -58 204 26 258 261 110 4 chr11 33988844 33988956 -114794516 + MIR3 SINE MIR 62 187 -21 1055 240 29 0 chr11 33989869 33990115 -114793357 + MIR SINE MIR 10 262 0 298 267 133 12 chr11 33991481 33991658 -114791814 + MIR SINE MIR 43 250 -12 266 248 248 37 chr11 33991960 33992121 -114791351 + MIR SINE MIR 51 245 -17 1992 204 60 24 chr11 33992386 33992852 -114790620 - MLT1D LTR MaLR 0 505 23 4170 160 21 4 chr11 33993752 33994465 -114789007 - L1MB2 LINE L1 0 6171 5447 531 290 27 21 chr11 33994626 33994812 -114788660 - L1MC4a LINE L1 -1894 5914 5728 858 276 14 5 chr11 33994843 33995060 -114788412 + MIR SINE MIR 1 219 -43 266 204 51 41 chr11 33995098 33995157 -114788315 - L1MC4a LINE L1 -422 5699 5637 485 146 19 39 chr11 33995157 33995260 -114788212 - L1PA12 LINE L1 0 6168 6068 266 204 51 41 chr11 33995260 33995298 -114788174 - L1MC4a LINE L1 -484 5637 5601 454 271 162 32 chr11 33995914 33996198 -114787274 - L1ME4a LINE L1 -4 6117 5797 248 234 160 21 chr11 33996266 33996360 -114787112 + MIR3 SINE MIR 9 115 -93 2295 87 0 0 chr11 33996423 33996709 -114786763 + AluSx SINE Alu 20 305 -7 251 225 207 18 chr11 33997167 33997278 -114786194 + MIR3 SINE MIR 39 170 -38 182 304 14 14 chr11 33997285 33997354 -114786118 - L2 LINE L2 0 3272 3204 339 78 56 49 chr11 33997423 33997565 -114785907 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 650 266 25 30 chr11 33997569 33997772 -114785700 - MIR SINE MIR -49 213 12 595 288 111 4 chr11 33997819 33998045 -114785427 - MIR SINE MIR -12 250 1 287 321 15 0 chr11 33998572 33998703 -114784769 + (TGAA)n Simple_repeat Simple_repeat 3 135 0 447 316 109 0 chr11 34001218 34001411 -114782061 - MIR SINE MIR -34 228 15 264 319 86 0 chr11 34001445 34001561 -114781911 - MIR3 SINE MIR -19 189 64 311 217 59 86 chr11 34001939 34002091 -114781381 + MIR3 SINE MIR 7 154 -54 5040 47 8 13 chr11 34002311 34003336 -114780136 - SVA Other Other -955 1386 1 204 97 0 0 chr11 34003337 34003368 -114780104 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 753 234 52 40 chr11 34003780 34004032 -114779440 - MIR SINE MIR 0 262 8 207 0 0 0 chr11 34005096 34005119 -114778353 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 614 206 29 7 chr11 34005140 34005276 -114778196 - L1ME1 LINE L1 -117 6049 5911 277 153 34 0 chr11 34005285 34005344 -114778128 - L1ME1 LINE L1 -855 5291 5231 426 257 198 21 chr11 34006473 34006811 -114776661 - L2 LINE L2 -756 2558 2161 728 186 0 41 chr11 34007382 34007527 -114775945 - MER20 DNA MER1_type -1 218 80 653 309 14 14 chr11 34007554 34007719 -114775753 + MIR SINE MIR 43 211 -51 1747 162 0 11 chr11 34007719 34008028 -114775444 + AluJb SINE Alu 1 306 0 653 309 14 14 chr11 34008028 34008081 -114775391 + MIR SINE MIR 210 262 0 711 68 0 29 chr11 34008185 34008288 -114775184 + L1PA8 LINE L1 6071 6170 -2 25 31 0 0 chr11 34008538 34008570 -114774902 + AT_rich Low_complexity Low_complexity 1 32 0 2287 117 3 0 chr11 34008980 34009289 -114774183 - AluSg SINE Alu 0 310 1 531 223 12 36 chr11 34009728 34009749 -114773723 - L1MA10 LINE L1 0 6334 6314 1510 211 42 29 chr11 34009749 34009970 -114773502 - L1ME2 LINE L1 -9 6155 5925 2343 84 7 0 chr11 34009970 34010266 -114773206 - AluSx SINE Alu -14 298 1 1510 211 42 29 chr11 34010266 34010452 -114773020 - L1ME2 LINE L1 -239 5925 5743 269 293 132 19 chr11 34010520 34010732 -114772740 - L1ME4a LINE L1 -38 6083 5848 3059 270 57 6 chr11 34010850 34011892 -114771580 - L2 LINE L2 -440 2874 1780 1734 173 22 31 chr11 34011968 34012327 -114771145 - MLT1A1 LTR MaLR 0 365 10 326 303 79 30 chr11 34012414 34012579 -114770893 + MIR3 SINE MIR 25 197 -11 283 272 48 40 chr11 34012929 34013054 -114770418 - MIR SINE MIR -63 145 20 906 265 101 45 chr11 34013523 34013859 -114769613 - MLT1H LTR MaLR -194 355 1 216 237 13 26 chr11 34015493 34015569 -114767903 + T-rich Low_complexity Low_complexity 5 79 0 2088 132 0 25 chr11 34015972 34016290 -114767182 - AluSx SINE Alu -2 310 1 728 244 18 0 chr11 34016849 34017017 -114766455 + MIR SINE MIR 43 213 -49 212 321 64 9 chr11 34017345 34017454 -114766018 + MIR SINE MIR 78 192 -70 221 105 26 0 chr11 34017508 34017546 -114765926 + L2 LINE L2 3267 3305 -8 351 96 0 0 chr11 34017972 34018024 -114765448 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 316 332 183 13 chr11 34018027 34018328 -114765144 - L2 LINE L2 -35 3237 2886 197 211 289 11 chr11 34018409 34018499 -114764973 + MIR SINE MIR 35 149 -113 24 106 0 0 chr11 34018788 34018882 -114764590 + GC_rich Low_complexity Low_complexity 1 94 0 657 250 41 49 chr11 34019022 34019266 -114764206 + MIR SINE MIR 21 262 0 433 260 49 16 chr11 34019792 34019915 -114763557 - L2 LINE L2 -13 3259 3133 248 273 112 48 chr11 34020409 34020596 -114762876 - L2 LINE L2 -1 3312 3114 361 294 145 8 chr11 34020807 34021069 -114762403 - L1ME4a LINE L1 -80 6041 5744 346 314 13 38 chr11 34021428 34021587 -114761885 + MIR SINE MIR 59 213 -49 442 295 155 0 chr11 34021624 34021824 -114761648 - MIR SINE MIR -30 232 2 273 287 16 82 chr11 34022730 34022852 -114760620 - L2 LINE L2 -4 3268 3155 627 214 29 0 chr11 34023028 34023168 -114760304 + MIR SINE MIR 18 161 -101 * 706 198 31 12 chr11 34023157 34023319 -114760153 - MIR SINE MIR 0 262 98 275 218 140 99 chr11 34023414 34023583 -114759889 + L1ME4a LINE L1 5866 6049 -72 1969 151 17 7 chr11 34023583 34023881 -114759591 - AluJb SINE Alu -11 301 1 275 218 140 99 chr11 34023881 34023954 -114759518 + L1ME4a LINE L1 6049 6118 -3 347 326 47 0 chr11 34024546 34024675 -114758797 + L2 LINE L2 3176 3310 -3 774 238 66 78 chr11 34024802 34025122 -114758350 - MER46C DNA MER2_type -21 317 2 416 295 115 11 chr11 34025170 34025353 -114758119 + MIR SINE MIR 58 259 -3 196 271 47 19 chr11 34025354 34025461 -114758011 - MIR SINE MIR -61 201 92 1690 174 18 0 chr11 34025466 34025741 -114757731 + AluJo SINE Alu 11 290 -22 1709 144 59 4 chr11 34025763 34026033 -114757439 + AluSg SINE Alu 10 294 -16 212 178 0 22 chr11 34026847 34026892 -114756580 + GA-rich Low_complexity Low_complexity 1 44 0 930 207 0 5 chr11 34027299 34027492 -114755980 - MER96B DNA MER1_type? -183 234 43 385 233 45 68 chr11 34027511 34027644 -114755828 - LTR16C LTR ERVL -236 255 126 373 132 13 53 chr11 34027830 34027906 -114755566 + MLT1K LTR MaLR 510 582 -6 2254 149 56 26 chr11 34027973 34028486 -114754986 - MLT2A2 LTR ERVL 0 554 1 248 260 87 10 chr11 34028931 34029035 -114754437 + L2 LINE L2 3161 3272 0 293 290 179 16 chr11 34029138 34029318 -114754154 - MIR SINE MIR -40 222 15 363 229 72 0 chr11 34030605 34030688 -114752784 + L2 LINE L2 3184 3272 0 22 0 0 0 chr11 34030701 34030723 -114752749 + AT_rich Low_complexity Low_complexity 1 22 0 1985 117 48 0 chr11 34031292 34031595 -114751877 - AluSg SINE Alu 0 316 1 1727 112 0 4 chr11 34032041 34032274 -114751198 + AluSg SINE Alu 1 232 -78 401 289 99 35 chr11 34032493 34032725 -114750747 + MIR SINE MIR 16 262 0 216 363 52 0 chr11 34033079 34033214 -114750258 + MIR SINE MIR 25 166 -96 607 289 172 18 chr11 34033852 34034184 -114749288 + L1ME4a LINE L1 5737 6119 -2 305 325 97 7 chr11 34034924 34035078 -114748394 - MIR3 SINE MIR -22 186 19 27 0 0 0 chr11 34035219 34035246 -114748226 + AT_rich Low_complexity Low_complexity 1 27 0 473 311 28 19 chr11 34035283 34035495 -114747977 + MIR SINE MIR 34 247 -15 202 204 259 0 chr11 34035596 34035650 -114747822 - L2 LINE L2 0 3272 3205 185 138 0 0 chr11 34036382 34036411 -114747061 - MIR3 SINE MIR -27 181 153 491 277 101 0 chr11 34036411 34036559 -114746913 + MER117 DNA MER1_type 1 163 -34 271 190 17 0 chr11 34036613 34036671 -114746801 - MIR SINE MIR -109 99 41 555 277 79 72 chr11 34036835 34037365 -114746107 - MLT1F LTR MaLR -7 535 2 219 69 0 0 chr11 34037961 34037990 -114745482 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 722 273 88 42 chr11 34039125 34039646 -114743826 + L1ME4a LINE L1 5573 6117 -4 291 218 0 0 chr11 34039817 34039872 -114743600 + L2 LINE L2 3218 3272 0 499 223 0 0 chr11 34040692 34040795 -114742677 + MIR SINE MIR 47 149 -113 335 309 91 6 chr11 34040924 34041089 -114742383 - MIR SINE MIR -70 192 14 368 310 13 39 chr11 34042056 34042158 -114741314 - MIR SINE MIR -1 261 163 2611 112 3 8 chr11 34042158 34042524 -114740948 - THE1B LTR MaLR 0 364 1 368 310 13 39 chr11 34042524 34042576 -114740896 - MIR SINE MIR -99 163 111 241 353 64 12 chr11 34042632 34042805 -114740667 - L2 LINE L2 -173 3099 2918 356 296 50 25 chr11 34042993 34043152 -114740320 - MIR SINE MIR -69 193 31 275 333 103 32 chr11 34043962 34044118 -114739354 + MER5B DNA MER1_type 11 177 -1 419 304 82 10 chr11 34044278 34044472 -114739000 + MIR SINE MIR 54 261 -1 198 0 0 0 chr11 34044488 34044510 -114738962 + (CA)n Simple_repeat Simple_repeat 2 23 0 279 122 0 0 chr11 34044510 34044559 -114738913 + (GA)n Simple_repeat Simple_repeat 1 49 0 288 200 120 30 chr11 34044559 34044659 -114738813 + L1ME4a LINE L1 5964 6072 -49 300 313 111 56 chr11 34045523 34045900 -114737572 - L2 LINE L2 -27 3245 2848 1251 227 74 72 chr11 34045937 34046176 -114737296 + MER113 DNA MER1_type? 6 243 -278 423 0 0 0 chr11 34046176 34046223 -114737249 + (CA)n Simple_repeat Simple_repeat 2 48 0 1251 227 74 72 chr11 34046223 34046495 -114736977 + MER113 DNA MER1_type? 243 518 -3 203 256 29 23 chr11 34048028 34048200 -114735272 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 23 54 0 0 chr11 34048211 34048248 -114735224 + AT_rich Low_complexity Low_complexity 1 37 0 653 272 55 5 chr11 34048866 34049083 -114734389 - MIR SINE MIR -1 261 34 180 0 0 0 chr11 34049415 34049435 -114734037 + (T)n Simple_repeat Simple_repeat 1 20 0 407 298 69 18 chr11 34049840 34050058 -114733414 + MLT1L LTR MaLR 147 375 -240 298 265 83 38 chr11 34050135 34050267 -114733205 + MLT1L LTR MaLR 477 614 -1 350 317 19 0 chr11 34050767 34050871 -114732601 + MLT1J1 LTR MaLR 69 174 -272 2976 33 41 0 chr11 34050967 34051329 -114732143 - L1PA4 LINE L1 -2 6153 5777 4023 28 2 0 chr11 34052498 34053002 -114730470 + L1PA3 LINE L1 5679 6183 0 1807 173 0 16 chr11 34054155 34054492 -114728980 + AluJo SINE Alu 1 312 0 331 254 35 77 chr11 34054493 34054662 -114728810 - MER103 DNA DNA -1 165 4 2165 128 3 6 chr11 34055811 34056123 -114727349 - AluSx SINE Alu -1 311 1 193 177 0 32 chr11 34056147 34056209 -114727263 + GA-rich Low_complexity Low_complexity 1 60 0 315 252 122 8 chr11 34056416 34056547 -114726925 + MLT1L LTR MaLR 133 278 -337 308 237 29 86 chr11 34056799 34056938 -114726534 + MIR SINE MIR 60 190 -72 2510 81 0 0 chr11 34057173 34057480 -114725992 + AluY SINE Alu 1 307 -4 191 374 44 33 chr11 34057658 34057749 -114725723 - L2 LINE L2 -40 3232 3141 198 0 0 0 chr11 34058023 34058045 -114725427 + (TG)n Simple_repeat Simple_repeat 1 22 0 234 314 57 29 chr11 34058072 34058212 -114725260 - L2 LINE L2 -456 2858 2715 206 200 20 40 chr11 34058995 34059045 -114724427 + L2 LINE L2 3034 3082 -190 606 304 20 10 chr11 34059145 34059349 -114724123 - MIR SINE MIR -56 206 1 186 103 0 0 chr11 34060663 34060692 -114722780 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1036 195 91 5 chr11 34060705 34060926 -114722546 - AluJo SINE Alu -72 240 1 435 52 0 0 chr11 34062045 34062103 -114721369 + (CA)n Simple_repeat Simple_repeat 1 58 0 533 229 11 87 chr11 34064522 34064705 -114718767 + MER21B LTR ERV1 681 849 -14 3187 140 61 23 chr11 34065873 34066408 -114717064 - L1MB8 LINE L1 -1 6177 5613 1681 161 29 63 chr11 34066408 34066786 -114716686 - MLT1A1 LTR MaLR 0 365 1 3187 140 61 23 chr11 34066786 34066870 -114716602 - L1MB8 LINE L1 -565 5613 5534 534 211 58 26 chr11 34067137 34067293 -114716179 + MER103 DNA DNA 2 162 -4 424 240 41 55 chr11 34067551 34067697 -114715775 - MIR SINE MIR -111 151 8 273 29 0 0 chr11 34067888 34067922 -114715550 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr11 34067974 34068012 -114715460 + (T)n Simple_repeat Simple_repeat 1 38 0 911 189 0 0 chr11 34068384 34068587 -114714885 + FRAM SINE Alu 1 203 0 1879 148 27 13 chr11 34069218 34069516 -114713956 - AluJb SINE Alu -10 302 1 186 185 169 15 chr11 34069553 34069618 -114713854 + MIR3 SINE MIR 131 205 -3 533 265 115 52 chr11 34069913 34070279 -114713193 + MLT1K LTR MaLR 191 579 -9 186 71 0 0 chr11 34070825 34070853 -114712619 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 467 297 114 5 chr11 34071150 34071352 -114712120 + L2 LINE L2 2837 3060 -253 636 255 132 32 chr11 34071352 34071846 -114711626 - MLT1G LTR MaLR 0 595 1 422 276 115 46 chr11 34071864 34072081 -114711391 + L2 LINE L2 3074 3305 -8 416 204 41 0 chr11 34073227 34073325 -114710147 + L1ME LINE L1 5628 5729 -392 1508 121 0 39 chr11 34073372 34073604 -114709868 + AluSg/x SINE Alu 70 292 -18 1581 191 10 13 chr11 34073714 34074023 -114709449 + AluJo SINE Alu 5 312 0 1633 50 0 0 chr11 34074079 34074277 -114709195 + L1PA7 LINE L1 5949 6146 -8 1196 83 12 12 chr11 34074388 34074556 -114708916 - L1MA1 LINE L1 0 6302 6135 1033 217 191 31 chr11 34075002 34075352 -114708120 - MLT1J LTR MaLR -105 406 1 408 217 47 28 chr11 34076746 34076852 -114706620 - MER69 DNA AcHobo -2418 108 1 200 204 102 102 chr11 34076928 34076977 -114706495 + MIR SINE MIR 52 100 -162 1837 143 58 33 chr11 34076977 34077341 -114706131 - THE1C LTR MaLR 0 375 3 200 204 102 102 chr11 34077341 34077389 -114706083 + MIR SINE MIR 99 149 -113 486 301 68 51 chr11 34077396 34077508 -114705964 + MLT1J LTR MaLR 1 110 -336 1934 221 8 65 chr11 34077508 34078001 -114705471 - LTR40c LTR ERVL 0 465 1 486 301 68 51 chr11 34078001 34078352 -114705120 + MLT1J LTR MaLR 110 444 -2 245 75 25 0 chr11 34078668 34078708 -114704764 + (TC)n Simple_repeat Simple_repeat 2 42 0 292 245 30 73 chr11 34078828 34079000 -114704472 + MIR SINE MIR 38 201 -61 1075 162 22 0 chr11 34079075 34079260 -114704212 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr11 34079319 34079343 -114704129 + AT_rich Low_complexity Low_complexity 1 24 0 1053 284 100 20 chr11 34079579 34079988 -114703484 - MLT1K LTR MaLR -8 580 139 321 231 34 34 chr11 34080042 34080159 -114703313 + MLT1J LTR MaLR 394 510 -1 256 162 40 81 chr11 34080307 34080343 -114703129 + MIR SINE MIR 129 162 -100 1359 196 72 36 chr11 34080343 34080675 -114702797 - MER2 DNA MER2_type 0 344 1 256 162 40 81 chr11 34080675 34080712 -114702760 + MIR SINE MIR 162 199 -63 950 213 36 32 chr11 34081675 34081896 -114701576 + MER58A DNA MER1_type 3 224 0 508 199 81 44 chr11 34082286 34082422 -114701050 - Charlie8 DNA MER1_type -2151 266 126 949 98 7 7 chr11 34082543 34082696 -114700776 + (GGAA)n Simple_repeat Simple_repeat 3 155 0 251 203 14 0 chr11 34083031 34083105 -114700367 + GA-rich Low_complexity Low_complexity 1 75 0 743 268 81 7 chr11 34083226 34083510 -114699962 + L1ME4a LINE L1 5815 6119 -2 229 195 0 0 chr11 34084877 34084918 -114698554 + (CA)n Simple_repeat Simple_repeat 2 42 0 1968 180 41 21 chr11 34084950 34085338 -114698134 + MSTD LTR MaLR 1 396 0 454 328 44 16 chr11 34085394 34085644 -114697828 + MIR SINE MIR 3 259 -3 2200 124 0 0 chr11 34086176 34086474 -114696998 + AluSx SINE Alu 3 300 -12 574 103 0 0 chr11 34086809 34086887 -114696585 - AluS SINE Alu -232 80 3 344 217 78 83 chr11 34087519 34087652 -114695820 - MIR SINE MIR -67 141 24 286 221 29 0 chr11 34087719 34087787 -114695685 - MER96 DNA MER1_type? -24 151 82 300 247 129 73 chr11 34088675 34088853 -114694619 - MIR SINE MIR -55 207 20 201 222 141 40 chr11 34088910 34089009 -114694463 - MIR SINE MIR -75 187 79 280 313 16 16 chr11 34089379 34089507 -114693965 + LTR33 LTR ERVL 328 455 -66 571 253 62 34 chr11 34089593 34089791 -114693681 - LTR33 LTR ERVL 0 521 320 359 312 32 48 chr11 34089794 34089980 -114693492 - LTR33 LTR ERVL -332 189 7 1225 267 53 15 chr11 34090087 34090480 -114692992 + L1MC4 LINE L1 7190 7597 -445 1079 259 16 8 chr11 34090481 34090766 -114692706 + L1ME3A LINE L1 5813 6103 -67 275 49 24 0 chr11 34090781 34090822 -114692650 + (TG)n Simple_repeat Simple_repeat 2 43 0 301 218 7 102 chr11 34090822 34090961 -114692511 + L1MC4 LINE L1 7916 8042 0 3399 97 11 40 chr11 34091346 34091646 -114691826 - L1PA13 LINE L1 -2 6161 5880 2226 98 0 14 chr11 34091646 34091975 -114691497 + AluSg SINE Alu 1 325 0 3399 97 11 40 chr11 34091975 34092197 -114691275 - L1PA13 LINE L1 -283 5880 5653 281 182 18 0 chr11 34092749 34092804 -114690668 + L2 LINE L2 3256 3311 -2 370 244 183 0 chr11 34093218 34093349 -114690123 - MIR SINE MIR -16 246 92 1199 223 54 113 chr11 34093351 34093723 -114689749 + MLT2B1 LTR ERVL 1 350 -64 605 170 35 6 chr11 34093727 34093898 -114689574 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 326 76 21 0 chr11 34093900 34093953 -114689519 + MLT2B1 LTR ERVL 400 520 0 795 236 110 80 chr11 34094143 34094205 -114689267 + MLT1L LTR MaLR 236 295 -320 2183 111 3 3 chr11 34094205 34094503 -114688969 + AluSc SINE Alu 2 299 -10 795 236 110 80 chr11 34094503 34094804 -114688668 + MLT1L LTR MaLR 295 610 -5 186 133 0 0 chr11 34094983 34095013 -114688459 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 978 290 24 10 chr11 34096011 34096301 -114687171 - MLT1I LTR MaLR 0 409 116 258 330 38 0 chr11 34097810 34097916 -114685556 - MIR SINE MIR -141 121 12 1305 90 58 0 chr11 34097917 34098105 -114685367 + MER30 DNA MER1_type 1 199 -31 363 291 103 8 chr11 34098183 34098300 -114685172 + MIR SINE MIR 22 149 -113 288 200 158 0 chr11 34098975 34099070 -114684402 + MIR SINE MIR 2 111 -151 1706 219 68 35 chr11 34099070 34099559 -114683913 + MLT1D LTR MaLR 1 505 0 214 273 117 0 chr11 34099792 34099869 -114683603 + MIR SINE MIR 57 142 -120 297 203 0 0 chr11 34100106 34100165 -114683307 - L2 LINE L2 -3 3310 3252 245 301 161 0 chr11 34100203 34100296 -114683176 - MER91A DNA MER1_type 0 196 89 231 88 0 0 chr11 34101182 34101216 -114682256 + (A)n Simple_repeat Simple_repeat 1 34 0 275 319 119 39 chr11 34101233 34101518 -114681954 - MLT1K LTR MaLR -67 521 214 607 272 48 28 chr11 34101700 34102034 -114681438 + LTR33 LTR ERVL 47 452 -69 737 208 157 20 chr11 34102052 34102249 -114681223 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr11 34102979 34103000 -114680472 + AT_rich Low_complexity Low_complexity 1 21 0 262 253 36 31 chr11 34103360 34103480 -114679992 + MIR SINE MIR 20 145 -63 254 243 207 18 chr11 34103524 34103635 -114679837 - L2 LINE L2 0 3272 3141 187 205 51 39 chr11 34103935 34104013 -114679459 - L2 LINE L2 -497 2817 2739 223 269 0 0 chr11 34104305 34104357 -114679115 + L2 LINE L2 3211 3262 -10 302 274 15 74 chr11 34105607 34105733 -114677739 + MER5A DNA MER1_type 1 120 -69 2441 73 7 0 chr11 34105733 34106033 -114677439 - AluSp SINE Alu -7 306 5 420 20 0 0 chr11 34106686 34106735 -114676737 + (TAA)n Simple_repeat Simple_repeat 1 49 0 415 148 10 40 chr11 34106776 34106877 -114676595 - L1MC5 LINE L1 -31 7930 7833 1956 151 7 3 chr11 34106897 34107202 -114676270 - AluSx SINE Alu -6 306 1 683 258 54 41 chr11 34107237 34107606 -114675866 - L1MC5 LINE L1 -233 7728 7355 268 313 94 39 chr11 34107695 34107928 -114675544 + L2 LINE L2 1706 1951 -1363 497 292 32 50 chr11 34108158 34108436 -114675036 - MLT1H1 LTR MaLR -273 282 11 363 283 122 69 chr11 34108483 34108965 -114674507 + L2 LINE L2 1984 2504 -810 207 0 0 0 chr11 34108965 34108988 -114674484 + (TC)n Simple_repeat Simple_repeat 2 24 0 363 283 122 69 chr11 34108988 34109088 -114674384 + L2 LINE L2 2504 2597 -717 383 266 136 34 chr11 34109304 34109481 -114673991 + L2 LINE L2 2582 2776 -538 261 0 0 0 chr11 34109483 34109512 -114673960 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr11 34109512 34109532 -114673940 + (A)n Simple_repeat Simple_repeat 1 20 0 2344 121 30 30 chr11 34109565 34109929 -114673543 - THE1B LTR MaLR 0 364 1 1047 270 124 39 chr11 34109955 34110343 -114673129 - MLT1L LTR MaLR -17 598 151 2501 102 34 11 chr11 34110343 34110697 -114672775 + THE1B LTR MaLR 1 362 -2 1047 270 124 39 chr11 34110697 34110842 -114672630 - MLT1L LTR MaLR -464 151 20 587 177 62 8 chr11 34111031 34111161 -114672311 - MER34B LTR ERV1 -5 560 424 694 291 54 25 chr11 34111173 34111489 -114671983 - LTR24B LTR ERV1 -7 569 245 435 171 2 30 chr11 34111562 34111656 -114671816 - LTR24B LTR ERV1 -367 98 9 885 203 27 0 chr11 34111666 34111853 -114671619 - MER34B LTR ERV1 -159 406 215 391 203 0 130 chr11 34111885 34112023 -114671449 - MER34B LTR ERV1 -440 125 6 1292 139 24 20 chr11 34112094 34112475 -114670997 + MLT2A2 LTR ERVL 170 453 0 610 231 88 114 chr11 34112539 34112950 -114670522 + MLT1H LTR MaLR 138 537 -12 891 252 33 0 chr11 34113043 34113253 -114670219 + U3 snRNA snRNA 1 217 0 306 250 103 5 chr11 34113390 34113540 -114669932 + L1ME4a LINE L1 1187 6110 -8 245 219 14 0 chr11 34114107 34114180 -114669292 + CT-rich Low_complexity Low_complexity 3 76 0 1553 195 5 76 chr11 34114968 34115267 -114668205 - MLT1B LTR MaLR 0 390 128 2028 140 0 13 chr11 34115267 34115574 -114667898 - AluJb SINE Alu -9 303 1 1553 195 5 76 chr11 34115574 34115694 -114667778 - MLT1B LTR MaLR -262 128 1 586 253 31 12 chr11 34115767 34115997 -114667475 - L1MEc LINE L1 -4780 1864 1518 303 233 83 33 chr11 34116124 34116244 -114667228 - L1MEc LINE L1 -5168 1657 1532 2764 251 149 11 chr11 34117452 34118394 -114665078 - L1MEc LINE L1 -5288 1537 466 378 265 49 0 chr11 34118414 34118516 -114664956 - L2 LINE L2 -2 3270 3164 265 156 0 0 chr11 34118736 34118781 -114664691 - L2 LINE L2 -221 3051 3007 799 227 178 27 chr11 34118849 34119074 -114664398 + MLT1L LTR MaLR 1 259 -356 566 234 15 7 chr11 34119144 34119281 -114664191 + MLT1L LTR MaLR 447 584 -31 221 329 0 24 chr11 34119914 34119999 -114663473 + CT-rich Low_complexity Low_complexity 1 83 0 256 239 34 34 chr11 34120382 34120470 -114663002 + L2 LINE L2 2977 3064 -208 218 196 143 0 chr11 34120557 34120613 -114662859 + L2 LINE L2 3208 3271 -1 306 340 0 0 chr11 34120647 34120747 -114662725 + L2 LINE L2 3172 3271 -1 2199 92 20 0 chr11 34120949 34121241 -114662231 - AluSq SINE Alu -15 298 1 736 179 168 6 chr11 34121404 34121577 -114661895 - MER3 DNA MER1_type -3 206 6 349 228 131 48 chr11 34121635 34121780 -114661692 + Charlie8 DNA MER1_type 83 239 -2178 25 0 0 0 chr11 34122923 34122948 -114660524 + GC_rich Low_complexity Low_complexity 1 25 0 2282 75 9 38 chr11 34123295 34123614 -114659858 + AluSx SINE Alu 3 312 0 237 291 38 25 chr11 34124549 34124628 -114658844 - L2 LINE L2 0 3313 3234 348 274 250 40 chr11 34125563 34125815 -114657657 + MER102b DNA MER1_type 1 305 -36 451 240 123 7 chr11 34125975 34126121 -114657351 - MIR SINE MIR -60 202 40 232 167 0 0 chr11 34126204 34126252 -114657220 - L2 LINE L2 0 3313 3266 218 192 39 0 chr11 34126382 34126434 -114657038 + L2 LINE L2 3194 3247 -25 1457 177 0 61 chr11 34126526 34126693 -114656779 - AluJo SINE Alu -14 298 155 2429 68 0 3 chr11 34126693 34126987 -114656485 - AluY SINE Alu -18 293 1 1457 177 0 61 chr11 34126987 34127113 -114656359 - AluJo SINE Alu -157 155 23 510 229 25 8 chr11 34127944 34128062 -114655410 + MIR3 SINE MIR 38 157 -51 486 296 47 18 chr11 34128065 34128234 -114655238 + MER117 DNA MER1_type 1 174 -23 250 280 27 0 chr11 34129961 34130036 -114653436 - MLT1J2 LTR MaLR -3 447 371 439 262 163 60 chr11 34130110 34130319 -114653153 - MLT1J1 LTR MaLR -168 278 37 2369 90 0 10 chr11 34130319 34130618 -114652854 + AluSg SINE Alu 3 298 -12 439 262 163 60 chr11 34130618 34130660 -114652812 - MLT1J1 LTR MaLR -409 37 1 394 301 34 20 chr11 34133462 34133608 -114649864 + MIR SINE MIR 56 203 -59 240 172 92 69 chr11 34133823 34133910 -114649562 + MIR SINE MIR 124 212 -50 536 299 103 13 chr11 34133936 34134170 -114649302 + MIR SINE MIR 8 262 0 258 224 56 40 chr11 34134179 34134304 -114649168 - MIR SINE MIR -23 239 113 259 278 186 37 chr11 34137106 34137401 -114646071 + L2 LINE L2 2804 3142 -171 1124 198 109 70 chr11 34137402 34137832 -114645640 - MLT1C LTR MaLR 0 467 21 371 285 91 30 chr11 34137858 34138023 -114645449 + L2 LINE L2 3137 3311 -2 258 309 53 22 chr11 34138115 34138209 -114645263 - MIR SINE MIR -103 105 12 249 210 25 37 chr11 34139620 34139701 -114643771 - MIR SINE MIR -29 233 154 435 244 11 3 chr11 34139711 34139829 -114643643 - MLT1I LTR MaLR -10 428 315 424 211 18 46 chr11 34139898 34140007 -114643465 - MLT1I LTR MaLR -243 166 61 196 186 169 0 chr11 34140050 34140109 -114643363 - MIR SINE MIR -115 147 79 1085 282 25 11 chr11 34140263 34140547 -114642925 + MER115 DNA AcHobo 88 375 -318 1800 192 8 47 chr11 34140552 34140621 -114642851 + MLT1A1 LTR MaLR 1 71 -294 2897 105 32 32 chr11 34140621 34141086 -114642386 - MER4C LTR ERV1 0 465 1 1800 192 8 47 chr11 34141086 34141396 -114642076 + MLT1A1 LTR MaLR 71 365 0 2052 112 0 17 chr11 34141568 34141891 -114641581 + AluSg SINE Alu 1 318 0 343 284 58 31 chr11 34142054 34142247 -114641225 + MIR SINE MIR 4 203 -59 269 274 38 38 chr11 34142626 34142732 -114640740 - MIR SINE MIR -67 141 36 275 319 33 0 chr11 34142739 34142830 -114640642 + MIR SINE MIR 118 211 -51 232 242 0 16 chr11 34143053 34143115 -114640357 + MIR SINE MIR 122 182 -80 374 273 30 0 chr11 34143790 34143889 -114639583 + MIR SINE MIR 28 129 -133 21 0 0 0 chr11 34143889 34143910 -114639562 + AT_rich Low_complexity Low_complexity 1 21 0 422 127 42 0 chr11 34143910 34143981 -114639491 - U3 snRNA snRNA -142 75 2 325 217 38 38 chr11 34144012 34144118 -114639354 + MIR SINE MIR 157 262 0 353 80 0 0 chr11 34144124 34144174 -114639298 + MADE1 DNA Mariner 31 80 0 401 271 138 24 chr11 34144669 34144916 -114638556 + L1ME4a LINE L1 5843 6117 -4 1061 188 18 23 chr11 34145068 34145286 -114638186 - MLT1A1 LTR MaLR -17 348 132 238 167 30 45 chr11 34145286 34145352 -114638120 - HSMAR1 DNA Mariner 0 1287 1223 386 43 0 0 chr11 34145365 34145412 -114638060 + MADE1 DNA Mariner 34 80 0 474 197 162 26 chr11 34145412 34145529 -114637943 - MLT1A1 LTR MaLR -232 133 1 441 301 72 14 chr11 34145780 34145989 -114637483 - MIR SINE MIR -14 248 28 22 35 0 0 chr11 34146209 34146238 -114637234 + AT_rich Low_complexity Low_complexity 1 29 0 557 297 44 69 chr11 34146590 34146997 -114636475 - L2 LINE L2 -1 3271 2875 303 267 114 111 chr11 34147062 34147395 -114636077 - L2 LINE L2 -527 2787 2454 1326 161 117 22 chr11 34147483 34147757 -114635715 + AluJb SINE Alu 1 300 -2 264 229 0 48 chr11 34147890 34147973 -114635499 - L2 LINE L2 -991 2323 2245 262 353 19 6 chr11 34148522 34148678 -114634794 - MER5B DNA MER1_type 0 178 21 * 287 308 23 15 chr11 34148546 34148679 -114634793 + MER5A DNA MER1_type 37 170 -19 295 253 110 0 chr11 34148701 34148792 -114634680 - MIR3 SINE MIR -49 159 59 1743 166 27 7 chr11 34148800 34149063 -114634409 + AluJo SINE Alu 12 283 -29 1049 74 0 7 chr11 34149063 34149212 -114634260 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 1743 166 27 7 chr11 34149212 34149243 -114634229 + AluJo SINE Alu 283 312 0 974 186 0 38 chr11 34150009 34150192 -114633280 + FRAM SINE Alu 1 176 0 228 353 98 8 chr11 34150404 34150526 -114632946 + MIR SINE MIR 2 134 -128 2333 112 3 0 chr11 34150539 34150851 -114632621 - AluSq SINE Alu 0 313 1 239 273 39 0 chr11 34150854 34150931 -114632541 + MIR SINE MIR 124 203 -59 2448 131 69 5 chr11 34151549 34151955 -114631517 + MSTB1 LTR MaLR 1 432 0 1231 216 98 6 chr11 34152097 34152412 -114631060 - MER2 DNA MER2_type 0 344 1 292 305 193 17 chr11 34152458 34152815 -114630657 - L2 LINE L2 -384 2930 2511 537 274 153 13 chr11 34154628 34154935 -114628537 - L1ME4a LINE L1 -12 6109 5760 238 237 91 20 chr11 34154945 34154961 -114628511 - L1MD3 LINE L1 0 8041 8028 1959 168 3 0 chr11 34154961 34155270 -114628202 - AluJb SINE Alu -2 310 1 238 237 91 20 chr11 34155270 34155507 -114627965 - L1MD3 LINE L1 -13 8028 7789 220 340 52 0 chr11 34155613 34155710 -114627762 - L2 LINE L2 -32 3281 3180 255 203 0 0 chr11 34155852 34155911 -114627561 + (TG)n Simple_repeat Simple_repeat 1 59 0 401 258 0 69 chr11 34156367 34156526 -114626946 - MIR SINE MIR -66 196 49 1630 215 18 12 chr11 34156572 34156823 -114626649 + L1ME1 LINE L1 4922 5170 -1000 1475 147 67 135 chr11 34156823 34157224 -114626248 + MLT1A2 LTR MaLR 1 374 0 1630 215 18 12 chr11 34157224 34157540 -114625932 + L1ME1 LINE L1 5170 5489 -681 * 1796 315 15 14 chr11 34157537 34158121 -114625351 + L1PA16 LINE L1 1 585 -6202 15316 219 30 9 chr11 34158217 34162643 -114620829 + L1PA16 LINE L1 1324 5860 -937 1152 119 0 0 chr11 34162645 34162821 -114620651 + L1PA16 LINE L1 5960 6135 -682 4025 149 21 9 chr11 34162945 34163240 -114620232 + L1PA16 LINE L1 6137 6427 -390 513 0 0 0 chr11 34163240 34163297 -114620175 + (TA)n Simple_repeat Simple_repeat 2 58 0 4025 149 21 9 chr11 34163297 34163671 -114619801 + L1PA16 LINE L1 6427 6814 -3 2439 203 38 72 chr11 34163703 34163741 -114619731 + L1ME1 LINE L1 5471 5509 -657 2658 109 3 11 chr11 34163741 34164108 -114619364 + THE1B LTR MaLR 1 364 0 2439 203 38 72 chr11 34164108 34164329 -114619143 + L1ME1 LINE L1 5509 5736 -430 5259 94 8 1 chr11 34164329 34165054 -114618418 - L1PB2 LINE L1 -2 6149 5420 2439 203 38 72 chr11 34165054 34165506 -114617966 + L1ME1 LINE L1 5736 6159 -7 583 292 196 6 chr11 34166441 34166763 -114616709 - L2 LINE L2 0 3272 2890 2132 125 0 3 chr11 34167046 34167343 -114616129 - AluSx SINE Alu 0 312 17 320 206 0 0 chr11 34167409 34167472 -114616000 - MLT1K LTR MaLR -15 573 511 1611 168 112 3 chr11 34167480 34167801 -114615671 + L1MB3 LINE L1 5821 6176 -7 942 254 55 99 chr11 34167839 34168272 -114615200 - MLT1K LTR MaLR -112 476 63 183 327 91 27 chr11 34168598 34168708 -114614764 - L2 LINE L2 -582 2732 2616 529 292 30 67 chr11 34168709 34169038 -114614434 - L2 LINE L2 -849 2465 2149 848 280 22 0 chr11 34169232 34169457 -114614015 + LTR16C LTR ERVL 253 482 -9 2645 43 0 3 chr11 34169599 34169903 -114613569 + AluY SINE Alu 1 303 -8 1227 240 69 68 chr11 34170258 34170710 -114612762 + MLT1H LTR MaLR 41 545 -4 2216 105 58 28 chr11 34170802 34171165 -114612307 - THE1C LTR MaLR -1 374 1 212 258 45 34 chr11 34171242 34171331 -114612141 - MIR SINE MIR -24 238 149 2163 210 65 102 chr11 34171845 34172565 -114610907 - MER63D DNA MER1_type -12 1049 378 1912 174 0 3 chr11 34172565 34172875 -114610597 - AluJb SINE Alu -3 309 1 2163 210 65 102 chr11 34172875 34173188 -114610284 - MER63D DNA MER1_type -683 378 55 286 321 170 9 chr11 34173326 34173438 -114610034 - MIR SINE MIR -115 147 18 504 114 0 0 chr11 34174122 34174192 -114609280 + THE1C LTR MaLR 272 341 -34 458 270 97 54 chr11 34174238 34174516 -114608956 - MLT1K LTR MaLR -14 574 285 2424 74 7 3 chr11 34175302 34175601 -114607871 - AluY SINE Alu -10 301 2 310 316 0 0 chr11 34176470 34176568 -114606904 + LTR29-int LTR ERV1 487 584 -6538 372 268 18 9 chr11 34176596 34176708 -114606764 + LTR29-int LTR ERV1 1505 1617 -5059 2135 140 30 33 chr11 34177009 34177374 -114606098 - THE1B LTR MaLR 0 364 1 273 180 0 0 chr11 34177552 34177602 -114605870 + LTR29-int LTR ERV1 2489 2538 -6440 254 213 0 0 chr11 34178340 34178387 -114605085 + LTR29-int LTR ERV1 3317 3363 -5615 592 319 58 18 chr11 34179100 34179442 -114604030 + LTR29-int LTR ERV1 2621 2976 -4146 677 170 0 0 chr11 34179443 34179549 -114603923 + AluJb SINE Alu 2 107 -205 550 271 51 71 chr11 34179554 34179797 -114603675 + LTR29-int LTR ERV1 4317 4552 -3874 2727 101 3 8 chr11 34179797 34180174 -114603298 - THE1C LTR MaLR 0 375 1 550 271 51 71 chr11 34180174 34180284 -114603188 + LTR29-int LTR ERV1 4552 4663 -3763 274 165 152 51 chr11 34180296 34180375 -114603097 + LTR29-int LTR ERV1 7730 7816 0 1735 176 231 53 chr11 34181300 34181828 -114601644 + LTR29 LTR ERV1 1 622 0 481 201 14 9 chr11 34182044 34182160 -114601312 - MIR SINE MIR -62 146 43 357 242 109 8 chr11 34182537 34182665 -114600807 + MIR SINE MIR 20 160 -102 201 100 0 0 chr11 34183197 34183227 -114600245 + L2 LINE L2 3267 3296 -17 213 333 11 21 chr11 34184195 34184288 -114599184 + L2 LINE L2 2967 3058 -214 184 209 0 0 chr11 34184506 34184549 -114598923 + L2 LINE L2 3269 3311 -2 237 259 0 17 chr11 34184864 34184922 -114598550 - LTR67 LTR ERVL 0 557 501 712 233 23 0 chr11 34185112 34185284 -114598188 - MER5A DNA MER1_type -12 177 2 1227 165 9 31 chr11 34185767 34185991 -114597481 + MER20 DNA MER1_type 1 219 0 565 241 115 11 chr11 34186091 34186282 -114597190 + MIR SINE MIR 48 258 -4 187 318 15 0 chr11 34186911 34186977 -114596495 - MIR3 SINE MIR 0 208 142 1645 174 10 39 chr11 34187419 34187729 -114595743 - AluJb SINE Alu -11 301 1 400 123 31 0 chr11 34187846 34187911 -114595561 + MER58 DNA MER1_type 2354 2420 0 243 267 59 20 chr11 34187939 34188040 -114595432 - L1MEc LINE L1 -4792 1604 1500 321 275 58 0 chr11 34188290 34188410 -114595062 - L1MEc LINE L1 -5096 1109 983 1023 198 20 20 chr11 34188672 34188869 -114594603 + MER20 DNA MER1_type 23 219 0 310 294 287 0 chr11 34190168 34190311 -114593161 + MER91A DNA MER1_type 8 191 -5 242 172 16 62 chr11 34190541 34190605 -114592867 + LTR67 LTR ERVL 483 543 -14 326 298 12 0 chr11 34190628 34190712 -114592760 + L2 LINE L2 3188 3272 0 2200 119 7 0 chr11 34191053 34191348 -114592124 + AluSx SINE Alu 1 297 -15 5463 136 30 24 chr11 34191348 34192243 -114591229 - MER49 LTR ERV1 -22 901 1 221 309 71 1 chr11 34192291 34192400 -114591072 - MIR SINE MIR -79 129 12 273 253 69 11 chr11 34194299 34194386 -114589086 + MIR SINE MIR 34 125 -137 325 73 0 0 chr11 34195465 34195506 -114587966 + 5S rRNA rRNA 2 42 -79 446 276 9 0 chr11 34196006 34196122 -114587350 + MER69A DNA AcHobo 2 118 -59 21 0 0 0 chr11 34196122 34196143 -114587329 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 34196615 34196644 -114586828 + AT_rich Low_complexity Low_complexity 1 29 0 298 292 31 39 chr11 34196905 34197035 -114586437 - MIR SINE MIR -70 192 64 2179 115 3 0 chr11 34197185 34197480 -114585992 + AluSx SINE Alu 1 296 -16 338 132 0 0 chr11 34199206 34199259 -114584213 + L2 LINE L2 3248 3300 -13 216 0 0 0 chr11 34199259 34199283 -114584189 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 222 232 130 0 chr11 34199319 34199388 -114584084 - MIR SINE MIR -140 122 45 195 327 211 0 chr11 34199449 34199553 -114583919 - L2 LINE L2 -9 3263 3138 956 150 237 23 chr11 34200575 34200841 -114582631 - MER33 DNA MER1_type -1 323 1 288 202 31 116 chr11 34201287 34201416 -114582056 - MLT1K LTR MaLR -2 586 469 450 278 83 57 chr11 34201536 34201766 -114581706 - MLT1K LTR MaLR -284 304 69 246 216 204 11 chr11 34202513 34202601 -114580871 + L2 LINE L2 3204 3308 -5 1453 51 0 0 chr11 34203120 34203295 -114580177 + AluY SINE Alu 137 311 0 288 319 57 28 chr11 34205081 34205222 -114578250 + MIR3 SINE MIR 30 174 -34 1583 193 41 0 chr11 34205277 34205452 -114578020 - AluJo SINE Alu -5 307 114 324 0 0 0 chr11 34205452 34205488 -114577984 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1583 193 41 0 chr11 34205488 34205607 -114577865 - AluJo SINE Alu -198 114 1 2565 71 0 0 chr11 34205943 34206254 -114577218 - AluY SINE Alu 0 311 1 1943 169 3 6 chr11 34206268 34206581 -114576891 - AluJb SINE Alu 0 312 1 37 23 0 0 chr11 34208485 34208529 -114574943 + AT_rich Low_complexity Low_complexity 1 44 0 1960 151 0 0 chr11 34208793 34209103 -114574369 - AluSx SINE Alu 0 314 5 2278 96 0 26 chr11 34210927 34211229 -114572243 - AluSx SINE Alu -18 294 1 440 302 112 20 chr11 34211655 34212013 -114571459 + L1ME4a LINE L1 5558 5948 -173 1946 163 41 0 chr11 34212016 34212335 -114571137 + MER7A DNA MER2_type 17 346 0 233 330 34 11 chr11 34212335 34212511 -114570961 + L1ME4a LINE L1 5939 6118 -3 2210 97 38 0 chr11 34212602 34212768 -114570704 - AluSx SINE Alu -13 299 116 261 22 65 0 chr11 34212768 34212814 -114570658 + T-rich Low_complexity Low_complexity 2 50 0 2210 97 38 0 chr11 34212814 34212935 -114570537 - AluSx SINE Alu -196 116 1 715 252 147 72 chr11 34213603 34214072 -114569400 + MLT1J LTR MaLR 8 511 0 420 315 38 38 chr11 34214780 34215015 -114568457 - MIR SINE MIR 0 262 28 312 148 0 0 chr11 34215727 34215788 -114567684 + (TC)n Simple_repeat Simple_repeat 2 62 0 207 328 56 8 chr11 34216911 34217036 -114566436 + L2 LINE L2 3139 3269 -3 434 360 45 19 chr11 34217601 34217979 -114565493 + L2 LINE L2 2457 2844 -470 576 220 101 12 chr11 34218718 34218886 -114564586 + MIR SINE MIR 36 218 -44 2039 128 7 3 chr11 34218932 34219222 -114564250 - AluSx SINE Alu -21 291 1 592 311 104 0 chr11 34219459 34219681 -114563791 + MIR SINE MIR 6 250 -12 427 186 62 0 chr11 34219692 34219789 -114563683 - L2 LINE L2 -8 3305 3203 1298 136 4 53 chr11 34220891 34221119 -114562353 + MER20 DNA MER1_type 1 217 -2 2501 64 17 0 chr11 34221485 34221781 -114561691 - AluY SINE Alu -10 301 1 288 294 63 35 chr11 34222032 34222175 -114561297 + MIR SINE MIR 104 250 -12 296 285 40 117 chr11 34222860 34222953 -114560519 + MIR SINE MIR 33 132 -130 2108 134 0 28 chr11 34222953 34223273 -114560199 - AluJo SINE Alu -1 311 1 296 285 40 117 chr11 34223273 34223318 -114560154 + MIR SINE MIR 132 179 -83 2479 175 33 9 chr11 34223318 34223774 -114559698 + MLT1C LTR MaLR 1 467 0 296 285 40 117 chr11 34223774 34223883 -114559589 + MIR SINE MIR 179 262 0 225 275 43 0 chr11 34224760 34224829 -114558643 + L2 LINE L2 3000 3071 -201 570 266 90 65 chr11 34224993 34225610 -114557862 - L1ME4a LINE L1 -1 6120 5445 210 207 49 12 chr11 34225710 34225792 -114557680 + (TTATA)n Simple_repeat Simple_repeat 2 86 0 204 176 0 0 chr11 34225837 34225871 -114557601 - MIR SINE MIR -22 240 207 25 0 0 0 chr11 34226001 34226026 -114557446 + AT_rich Low_complexity Low_complexity 1 25 0 502 307 37 37 chr11 34226048 34226263 -114557209 - MIR SINE MIR -46 216 2 2240 103 10 0 chr11 34226666 34226966 -114556506 + AluY SINE Alu 1 303 -8 387 244 89 7 chr11 34227000 34227181 -114556291 - MIR SINE MIR -11 251 30 613 291 58 17 chr11 34228069 34228310 -114555162 - MIR SINE MIR -11 251 1 2471 187 63 73 chr11 34228455 34228471 -114555001 - MER63C DNA MER1_type -229 831 816 932 134 0 32 chr11 34228471 34228628 -114554844 + L1MA9 LINE L1 6159 6310 -2 2471 187 63 73 chr11 34228628 34229326 -114554146 - MER63C DNA MER1_type -244 816 124 540 163 203 0 chr11 34229361 34229484 -114553988 - MER63C DNA MER1_type -782 148 1 849 149 22 8 chr11 34229991 34230125 -114553347 + AluJo SINE Alu 1 136 -176 1626 193 13 10 chr11 34230131 34230442 -114553030 + AluJo SINE Alu 1 312 0 243 88 0 0 chr11 34231502 34231536 -114551936 + (A)n Simple_repeat Simple_repeat 1 34 0 3108 162 14 21 chr11 34232543 34233061 -114550411 + MLT2B2 LTR ERVL 2 515 0 397 236 22 0 chr11 34233218 34233307 -114550165 - MER94 DNA DNA -40 94 4 2235 95 17 7 chr11 34233432 34233727 -114549745 - AluJo SINE Alu -14 298 1 2151 126 0 3 chr11 34233992 34234294 -114549178 + AluSx SINE Alu 1 301 -11 1587 172 17 20 chr11 34234349 34234645 -114548827 + AluJo SINE Alu 1 295 -17 2094 112 0 17 chr11 34234676 34234971 -114548501 + AluSc SINE Alu 1 290 -19 353 254 115 0 chr11 34235136 34235258 -114548214 - MIR SINE MIR -41 221 86 2015 125 6 52 chr11 34235674 34236001 -114547471 - AluSx SINE Alu 0 312 1 1271 205 121 34 chr11 34236009 34236390 -114547082 - MLT2D LTR ERVL 0 414 1 347 271 75 19 chr11 34236907 34237014 -114546458 - MIR SINE MIR -121 141 29 231 88 0 0 chr11 34237293 34237327 -114546145 + (CA)n Simple_repeat Simple_repeat 1 34 0 246 32 0 0 chr11 34237749 34237780 -114545692 + (ATG)n Simple_repeat Simple_repeat 1 31 0 721 265 48 30 chr11 34237817 34238047 -114545425 - MIR SINE MIR -13 249 16 444 19 0 0 chr11 34238047 34238100 -114545372 + (TG)n Simple_repeat Simple_repeat 2 54 0 690 260 165 41 chr11 34238378 34238914 -114544558 + L2 LINE L2 2721 3306 -7 1771 152 14 24 chr11 34239045 34239342 -114544130 - AluJb SINE Alu -17 295 2 385 333 29 0 chr11 34239437 34239575 -114543897 - MIR3 SINE MIR -26 182 41 273 181 0 36 chr11 34240234 34240317 -114543155 + GA-rich Low_complexity Low_complexity 5 84 0 762 268 127 80 chr11 34240373 34240799 -114542673 + MLT1J LTR MaLR 1 507 -4 576 334 50 20 chr11 34240817 34241194 -114542278 + L2 LINE L2 1311 1702 -1612 243 0 0 0 chr11 34241194 34241221 -114542251 + (TAA)n Simple_repeat Simple_repeat 1 27 0 576 334 50 20 chr11 34241221 34241247 -114542225 + L2 LINE L2 1702 1726 -1588 343 259 101 22 chr11 34241451 34241590 -114541882 + MIR SINE MIR 39 188 -74 1265 242 83 54 chr11 34241607 34242140 -114541332 - LTR67 LTR ERVL -8 549 2 1864 149 0 20 chr11 34242232 34242533 -114540939 + AluJo SINE Alu 6 300 -12 2163 106 0 0 chr11 34242539 34242821 -114540651 + AluSx SINE Alu 18 299 -13 1704 151 17 20 chr11 34243433 34243551 -114539921 + AluJo SINE Alu 1 118 -194 471 18 0 0 chr11 34243551 34243607 -114539865 + (TA)n Simple_repeat Simple_repeat 2 57 0 1899 111 7 54 chr11 34243607 34243905 -114539567 - AluSx SINE Alu -28 284 1 1704 151 17 20 chr11 34243905 34244083 -114539389 + AluJo SINE Alu 116 297 -15 181 309 36 18 chr11 34244084 34244139 -114539333 - MIR SINE MIR -132 76 21 565 325 45 89 chr11 34245185 34245647 -114537825 - L2 LINE L2 0 3272 2831 21 0 0 0 chr11 34246197 34246218 -114537254 + AT_rich Low_complexity Low_complexity 1 21 0 767 229 64 0 chr11 34246864 34247052 -114536420 + MLT1J2 LTR MaLR 1 200 -250 1075 155 23 50 chr11 34247100 34247319 -114536153 + MER20 DNA MER1_type 1 213 -6 237 193 70 0 chr11 34247334 34247391 -114536081 + MLT1J1 LTR MaLR 271 331 -115 371 171 0 12 chr11 34247398 34247480 -114535992 + (CA)n Simple_repeat Simple_repeat 1 81 0 352 174 109 11 chr11 34247504 34247586 -114535886 + MLT1J2 LTR MaLR 360 446 0 2209 104 0 7 chr11 34248653 34248952 -114534520 + AluSx SINE Alu 1 297 -15 188 152 30 0 chr11 34249178 34249211 -114534261 - L2 LINE L2 -18 3254 3221 28 0 0 0 chr11 34249573 34249601 -114533871 + AT_rich Low_complexity Low_complexity 1 28 0 1664 159 17 41 chr11 34249651 34249760 -114533712 + AluJo SINE Alu 12 122 -190 2291 82 7 3 chr11 34249760 34250053 -114533419 - AluSp SINE Alu -19 294 1 1664 159 17 41 chr11 34250053 34250238 -114533234 + AluJo SINE Alu 122 299 -13 690 251 120 5 chr11 34250299 34250490 -114532982 - MIR SINE MIR -37 225 13 348 343 66 21 chr11 34250786 34251075 -114532397 + LTR16C LTR ERVL 190 491 0 2046 143 0 0 chr11 34251249 34251549 -114531923 - AluJb SINE Alu -7 305 6 818 214 6 19 chr11 34251556 34251715 -114531757 + MER58B DNA MER1_type 175 331 -10 2013 140 10 3 chr11 34251717 34252024 -114531448 + AluSx SINE Alu 1 309 -3 305 238 128 102 chr11 34252798 34253033 -114530439 - L2 LINE L2 -5 3267 3027 1583 176 61 0 chr11 34253694 34253972 -114529500 + AluJo SINE Alu 1 295 -17 392 239 143 57 chr11 34254004 34254213 -114529259 - MIR SINE MIR -34 228 2 180 0 0 0 chr11 34254225 34254245 -114529227 + (A)n Simple_repeat Simple_repeat 1 20 0 432 230 113 54 chr11 34254638 34254842 -114528630 + LTR33A LTR ERVL 1 216 -307 844 270 46 29 chr11 34254898 34255205 -114528267 + LTR33A LTR ERVL 210 521 -2 1615 75 232 0 chr11 34255455 34255696 -114527776 + AluSx SINE Alu 1 297 -15 583 309 56 28 chr11 34256607 34256859 -114526613 - MIR SINE MIR -3 259 1 1165 120 0 0 chr11 34258531 34258689 -114524783 - AluSq SINE Alu -20 293 136 4571 154 57 30 chr11 34258708 34259081 -114524391 + L1MB7 LINE L1 5147 5508 -676 2235 133 38 46 chr11 34259081 34259380 -114524092 + THE1B LTR MaLR 1 298 -66 2574 7 0 0 chr11 34259380 34259657 -114523815 - AluYa5 SINE Alu -2 309 33 2235 133 38 46 chr11 34259657 34259724 -114523748 + THE1B LTR MaLR 298 364 0 4571 154 57 30 chr11 34259724 34260342 -114523130 + L1MB7 LINE L1 5508 6168 -16 1134 276 38 0 chr11 34260345 34260606 -114522866 - LTR16C LTR ERVL -157 334 64 277 262 48 0 chr11 34260675 34260759 -114522713 + MIR SINE MIR 175 262 0 802 166 53 13 chr11 34261930 34262108 -114521364 - AluJb SINE Alu 0 312 137 279 0 0 0 chr11 34262247 34262278 -114521194 + (TG)n Simple_repeat Simple_repeat 2 32 0 2293 103 3 0 chr11 34262319 34262630 -114520842 - AluSp SINE Alu -1 312 1 904 257 120 22 chr11 34262722 34263146 -114520326 - L1ME4a LINE L1 -175 5946 5480 1742 179 0 29 chr11 34263951 34264263 -114519209 + AluJo SINE Alu 1 303 -9 6023 223 100 30 chr11 34264393 34264618 -114518854 + L1MC4 LINE L1 5254 5462 -2580 1311 191 167 8 chr11 34264618 34264875 -114518597 + AluJb SINE Alu 1 298 -4 6023 223 100 30 chr11 34264875 34265393 -114518079 + L1MC4 LINE L1 5462 5943 -2099 302 0 26 0 chr11 34265393 34265431 -114518041 + (ATG)n Simple_repeat Simple_repeat 1 39 0 6023 223 100 30 chr11 34265431 34266886 -114516586 + L1MC4 LINE L1 5943 7765 -277 1380 232 138 49 chr11 34266886 34267399 -114516073 + MER34B LTR ERV1 4 562 -3 6023 223 100 30 chr11 34267399 34267692 -114515780 + L1MC4 LINE L1 7765 8036 -6 1549 271 92 50 chr11 34267769 34268140 -114515332 + L1ME3A LINE L1 916 1270 -4859 1774 167 0 10 chr11 34268140 34268445 -114515027 + AluJo SINE Alu 1 302 -10 1549 271 92 50 chr11 34268445 34269541 -114513931 + L1ME3A LINE L1 1270 2449 -3680 633 285 47 0 chr11 34269651 34269865 -114513607 + L1ME3A LINE L1 2634 2857 -3272 2551 123 20 27 chr11 34269872 34270280 -114513192 + MSTB1 LTR MaLR 15 419 -13 702 260 56 39 chr11 34270292 34270583 -114512889 + L1ME3A LINE L1 2862 3164 -2965 1130 246 9 0 chr11 34270583 34270803 -114512669 - MER58A DNA MER1_type -1 223 2 702 260 56 39 chr11 34270803 34270923 -114512549 + L1ME3A LINE L1 3164 3280 -2849 21 71 0 0 chr11 34270923 34270965 -114512507 + AT_rich Low_complexity Low_complexity 1 42 0 1850 147 0 39 chr11 34271004 34271147 -114512325 + AluJb SINE Alu 1 127 -185 1278 66 6 6 chr11 34271147 34271313 -114512159 + L1PA6 LINE L1 5982 6147 -7 1850 147 0 39 chr11 34271313 34271475 -114511997 + AluJb SINE Alu 127 294 -18 326 217 33 42 chr11 34271476 34271596 -114511876 + L1ME3A LINE L1 3324 3442 -2687 611 70 0 0 chr11 34271727 34271822 -114511650 + AluSp/q SINE Alu 216 310 0 1643 245 78 56 chr11 34271823 34272651 -114510821 + L1ME3A LINE L1 4251 5097 -1032 1116 94 12 6 chr11 34272650 34272820 -114510652 + L1MA8 LINE L1 5992 6162 -129 * 779 117 66 15 chr11 34272873 34273010 -114510462 + L1MA8 LINE L1 6144 6287 -4 2890 243 75 21 chr11 34273112 34273610 -114509862 + L1ME3A LINE L1 5237 5803 -350 399 89 0 0 chr11 34273610 34273666 -114509806 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 2890 243 75 21 chr11 34273666 34274029 -114509443 + L1ME3A LINE L1 5803 6145 -8 27 0 0 0 chr11 34275674 34275701 -114507771 + AT_rich Low_complexity Low_complexity 1 27 0 367 314 95 0 chr11 34276176 34276313 -114507159 + L2 LINE L2 2904 3053 -219 439 248 74 78 chr11 34276382 34276652 -114506820 - L2 LINE L2 -48 3265 2997 297 357 103 0 chr11 34276708 34276834 -114506638 + L2 LINE L2 3133 3271 -1 391 229 50 101 chr11 34276964 34277143 -114506329 + Charlie7 DNA MER1_type 1 170 -2442 1645 149 9 62 chr11 34277277 34277598 -114505874 - AluJo SINE Alu -8 304 1 4971 108 51 23 chr11 34277652 34278469 -114505003 - Tigger3(Golem) DNA MER2_type 0 3029 2190 332 182 61 121 chr11 34278544 34278676 -114504796 + MLT1J LTR MaLR 236 359 -152 1325 171 120 0 chr11 34278780 34279055 -114504417 - AluSx SINE Alu -2 310 3 665 226 25 6 chr11 34279067 34279226 -114504246 + Charlie7 DNA MER1_type 845 1006 -1606 2248 65 0 31 chr11 34279292 34279628 -114503844 - AluY SINE Alu 0 327 1 279 253 137 53 chr11 34280050 34280240 -114503232 + L2 LINE L2 3108 3313 0 2472 30 40 10 chr11 34280272 34280573 -114502899 + AluY SINE Alu 1 310 -1 295 161 16 0 chr11 34280590 34280652 -114502820 + L1MA8 LINE L1 6227 6289 -2 204 286 36 0 chr11 34281630 34281686 -114501786 + MIR SINE MIR 93 150 -112 * 479 279 199 43 chr11 34281680 34282002 -114501470 + L3 LINE CR1 810 1181 -396 1099 149 12 18 chr11 34282281 34282449 -114501023 + FAM SINE Alu 4 170 -5 183 328 82 0 chr11 34282726 34282787 -114500685 - L2 LINE L2 -55 3258 3193 290 292 22 0 chr11 34282820 34282909 -114500563 + L3 LINE CR1 1187 1277 -300 542 272 102 68 chr11 34283030 34283265 -114500207 + MIR SINE MIR 2 244 -18 1865 133 40 10 chr11 34283351 34283652 -114499820 - AluSx SINE Alu -2 310 1 1681 156 9 75 chr11 34284683 34285017 -114498455 + AluJo SINE Alu 1 312 0 21 0 0 0 chr11 34287474 34287495 -114495977 + AT_rich Low_complexity Low_complexity 1 21 0 501 194 21 90 chr11 34288198 34288342 -114495130 + MER103 DNA DNA 14 147 -19 480 171 23 0 chr11 34288348 34288436 -114495036 + L2 LINE L2 3224 3313 0 210 240 100 0 chr11 34289554 34289604 -114493868 - L2 LINE L2 -15 3257 3203 419 264 24 40 chr11 34289707 34289832 -114493640 - MIR SINE MIR -132 130 8 198 0 0 0 chr11 34290152 34290174 -114493298 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1473 169 0 4 chr11 34290181 34290418 -114493054 - AluJb SINE Alu -76 236 1 2052 269 30 34 chr11 34290743 34291337 -114492135 - MLT1E LTR MaLR -1 592 1 2370 68 3 0 chr11 34291356 34291649 -114491823 - AluY SINE Alu -17 294 1 1618 174 166 14 chr11 34292594 34292938 -114490534 - MSTD LTR MaLR 0 396 1 6952 216 74 44 chr11 34292938 34294622 -114488850 - MSTD-int LTR MaLR 0 1735 1 997 143 14 0 chr11 34294622 34294769 -114488703 - MSTD LTR MaLR 0 396 248 1815 146 14 0 chr11 34294771 34295052 -114488420 + MER49 LTR ERV1 1 285 -638 1494 211 8 50 chr11 34295082 34295442 -114488030 + MER4D LTR ERV1 549 893 -10 1282 177 59 13 chr11 34295450 34295687 -114487785 - MSTD LTR MaLR -147 249 2 304 345 97 15 chr11 34295731 34295937 -114487535 - L2 LINE L2 -258 3055 2833 236 353 59 17 chr11 34295949 34296068 -114487404 - L2 LINE L2 -647 2667 2544 2707 19 7 3 chr11 34296388 34296697 -114486775 + AluY SINE Alu 2 311 0 377 306 67 8 chr11 34296709 34296843 -114486629 - MIR3 SINE MIR -29 179 38 1273 148 28 106 chr11 34298727 34299010 -114484462 + AluJo SINE Alu 23 283 -29 186 43 0 0 chr11 34299010 34299033 -114484439 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 342 49 0 0 chr11 34299844 34299885 -114483587 + L1PA16 LINE L1 5745 5785 -380 1437 149 88 54 chr11 34299889 34300184 -114483288 + AluJb SINE Alu 7 311 -1 228 163 0 0 chr11 34300199 34300242 -114483230 + G-rich Low_complexity Low_complexity 4 46 0 285 188 0 0 chr11 34300243 34300291 -114483181 + GA-rich Low_complexity Low_complexity 3 50 0 844 126 11 33 chr11 34300291 34300473 -114482999 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2603 138 3 3 chr11 34300481 34300872 -114482600 + L1PA16 LINE L1 5770 6160 -6 23 0 0 0 chr11 34300918 34300941 -114482531 + AT_rich Low_complexity Low_complexity 1 23 0 2112 154 89 16 chr11 34302535 34302904 -114480568 + MSTD LTR MaLR 1 396 0 2188 128 0 7 chr11 34303507 34303811 -114479661 - AluSg SINE Alu -8 302 1 427 232 126 53 chr11 34304240 34304391 -114479081 + MIR3 SINE MIR 45 206 -2 2381 97 0 0 chr11 34304510 34304809 -114478663 + AluSg SINE Alu 1 299 -11 929 304 83 54 chr11 34305233 34305750 -114477722 - MLT1H LTR MaLR -15 534 3 341 250 122 67 chr11 34305927 34306091 -114477381 + MIR SINE MIR 16 188 -74 6127 173 20 14 chr11 34306111 34306772 -114476700 - Tigger6a DNA MER2_type -514 1083 411 2249 107 0 28 chr11 34306772 34307090 -114476382 - AluSc SINE Alu 0 309 1 6127 173 20 14 chr11 34307090 34307504 -114475968 - Tigger6a DNA MER2_type -1186 411 1 1006 301 53 28 chr11 34307878 34308274 -114475198 + MLT1J LTR MaLR 14 419 -92 1843 39 0 87 chr11 34308299 34308553 -114474919 - AluSc SINE Alu -2 307 76 727 291 124 34 chr11 34308789 34309336 -114474136 + L3 LINE CR1 819 1453 -124 227 290 32 86 chr11 34309466 34309529 -114473943 + L3 LINE CR1 1481 1546 -31 198 0 0 0 chr11 34309529 34309551 -114473921 + (TG)n Simple_repeat Simple_repeat 1 22 0 2088 126 0 0 chr11 34309551 34309828 -114473644 - AluSx SINE Alu -31 281 5 227 290 32 86 chr11 34309828 34309856 -114473616 + L3 LINE CR1 1544 1568 -9 694 315 139 20 chr11 34309957 34310309 -114473163 - MLT1K LTR MaLR 0 588 195 563 294 37 6 chr11 34312046 34312209 -114471263 - MIR SINE MIR -74 188 21 369 262 165 37 chr11 34312235 34312399 -114471073 - MIR SINE MIR -49 213 29 993 256 135 58 chr11 34312414 34312717 -114470755 + MLT1J LTR MaLR 1 354 -157 2172 123 0 7 chr11 34312717 34313019 -114470453 + AluSx SINE Alu 4 303 -9 993 256 135 58 chr11 34313019 34313183 -114470289 + MLT1J LTR MaLR 354 504 -7 21 36 0 0 chr11 34313882 34313910 -114469562 + AT_rich Low_complexity Low_complexity 1 28 0 2041 146 3 3 chr11 34313919 34314220 -114469252 + AluJb SINE Alu 1 301 -11 239 250 106 43 chr11 34314260 34314468 -114469004 + L1ME LINE L1 5602 5822 -299 11613 167 12 12 chr11 34314621 34314890 -114468582 + L1PA15 LINE L1 2947 3215 -2950 2178 104 0 24 chr11 34314890 34315188 -114468284 + AluSx SINE Alu 1 291 -21 11613 167 12 12 chr11 34315188 34317975 -114465497 + L1PA15 LINE L1 3215 6134 -31 193 28 0 56 chr11 34317975 34318011 -114465461 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 503 271 50 52 chr11 34318020 34318382 -114465090 + L1MC5 LINE L1 7377 7737 -224 323 258 23 39 chr11 34318376 34318504 -114464968 + L1MC5 LINE L1 7658 7783 -178 * 555 289 14 66 chr11 34318543 34318754 -114464718 + MIR SINE MIR 20 219 -43 299 351 80 7 chr11 34319452 34319603 -114463869 + MER5B DNA MER1_type 1 162 -16 2383 154 61 7 chr11 34319978 34320388 -114463084 + MSTB1 LTR MaLR 1 432 0 257 0 30 0 chr11 34321041 34321074 -114462398 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1967 163 0 3 chr11 34321252 34321565 -114461907 + AluJb SINE Alu 1 312 0 239 164 91 0 chr11 34322037 34322092 -114461380 - L2 LINE L2 0 3313 3254 * 445 290 35 14 chr11 34322087 34322232 -114461240 + L2 LINE L2 2832 2979 -293 299 320 240 5 chr11 34322266 34322466 -114461006 + L2 LINE L2 2937 3183 -89 244 291 47 87 chr11 34322487 34322614 -114460858 + MIR SINE MIR 12 133 -129 312 182 102 31 chr11 34322614 34322725 -114460747 + L1M2 LINE L1 5658 5782 -509 1232 142 76 5 chr11 34322725 34322936 -114460536 + AluJo SINE Alu 84 309 -3 2125 179 29 11 chr11 34322937 34323316 -114460156 + L1PB4 LINE L1 5769 6154 -2 282 206 0 55 chr11 34323334 34323407 -114460065 + MIR SINE MIR 184 252 -10 2037 140 0 10 chr11 34323432 34323739 -114459733 + AluSx SINE Alu 7 310 -2 230 212 91 0 chr11 34323793 34323859 -114459613 + L1ME LINE L1 5195 5266 -880 606 274 137 57 chr11 34323877 34324009 -114459463 + L1ME LINE L1 5262 5382 -780 1351 181 87 32 chr11 34324009 34324286 -114459186 + AluJb SINE Alu 1 292 -20 2286 89 0 3 chr11 34324288 34324580 -114458892 + AluSc SINE Alu 15 305 -4 606 274 137 57 chr11 34324580 34324904 -114458568 + L1ME LINE L1 5382 5758 -404 1225 198 65 0 chr11 34325363 34325491 -114457981 - AluJo SINE Alu -49 263 145 405 0 0 0 chr11 34325491 34325536 -114457936 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1225 198 65 0 chr11 34325536 34325654 -114457818 - AluJo SINE Alu -167 145 1 266 313 21 0 chr11 34325698 34325794 -114457678 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 276 136 23 0 chr11 34325906 34325950 -114457522 + MER91 DNA MER1_type 65 109 -31 1133 124 57 11 chr11 34326207 34326517 -114456955 - THE1C LTR MaLR 0 375 1 336 24 0 0 chr11 34326946 34326987 -114456485 + (CA)n Simple_repeat Simple_repeat 2 42 0 950 264 143 36 chr11 34327021 34327520 -114455952 - MLT1H LTR MaLR 0 549 1 288 286 286 10 chr11 34329953 34330145 -114453327 - MIR SINE MIR -4 258 14 224 205 0 0 chr11 34330519 34330558 -114452914 + MIR SINE MIR 83 121 -87 2716 90 8 11 chr11 34330741 34331117 -114452355 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr11 34331788 34331821 -114451651 + AT_rich Low_complexity Low_complexity 1 33 0 369 231 52 45 chr11 34332092 34332226 -114451246 + L1ME4a LINE L1 5959 6093 -28 3966 157 12 44 chr11 34332321 34333091 -114450381 + L1MB8 LINE L1 5429 6173 -5 290 226 19 138 chr11 34333509 34333668 -114449804 - MER5A DNA MER1_type 0 189 50 305 309 24 8 chr11 34333970 34334093 -114449379 - MIR3 SINE MIR -10 198 74 1816 124 43 43 chr11 34334629 34334761 -114448711 + AluSx SINE Alu 1 132 -180 2591 60 0 0 chr11 34334761 34335059 -114448413 + AluY SINE Alu 1 298 -13 1816 124 43 43 chr11 34335059 34335238 -114448234 + AluSx SINE Alu 131 312 0 25 0 0 0 chr11 34335399 34335424 -114448048 + AT_rich Low_complexity Low_complexity 1 25 0 296 295 0 0 chr11 34335620 34335698 -114447774 - MIR SINE MIR -143 119 42 275 198 136 12 chr11 34336698 34336779 -114446693 + L2 LINE L2 3223 3313 0 280 165 9 156 chr11 34336983 34337034 -114446438 - MARNA DNA Mariner -15 571 543 2095 126 24 0 chr11 34337034 34337328 -114446144 + AluSx SINE Alu 1 301 -11 280 165 9 156 chr11 34337328 34337385 -114446087 - MARNA DNA Mariner -43 543 479 449 230 72 20 chr11 34337517 34337669 -114445803 - MIR3 SINE MIR -8 200 41 372 200 21 50 chr11 34337930 34338035 -114445437 + MER113 DNA MER1_type? 1 103 -418 1993 139 0 26 chr11 34338035 34338344 -114445128 - AluJb SINE Alu -11 301 1 372 200 21 50 chr11 34338344 34338378 -114445094 + MER113 DNA MER1_type? 103 136 -385 2379 76 0 0 chr11 34339604 34339893 -114443579 - AluY SINE Alu -22 289 1 313 253 0 0 chr11 34339929 34340004 -114443468 - MIR SINE MIR 0 262 188 246 267 78 0 chr11 34340095 34340185 -114443287 + MIR3 SINE MIR 66 162 -46 288 237 153 46 chr11 34340188 34340319 -114443153 + MER117 DNA MER1_type 6 150 -47 815 209 9 53 chr11 34340585 34340810 -114442662 - L1MC5 LINE L1 -58 7903 7689 32 26 0 0 chr11 34341480 34341519 -114441953 + AT_rich Low_complexity Low_complexity 1 39 0 2011 129 4 0 chr11 34342234 34342514 -114440958 - AluSg SINE Alu -5 305 25 262 152 134 152 chr11 34342519 34342631 -114440841 - MIR SINE MIR -70 192 83 2378 89 0 0 chr11 34345317 34345608 -114437864 + AluSg SINE Alu 1 291 -19 181 224 41 20 chr11 34345632 34345681 -114437791 + MIR3 SINE MIR 108 157 -51 518 329 87 21 chr11 34346013 34346299 -114437173 - L3 LINE CR1 -582 995 691 238 295 62 9 chr11 34346468 34346580 -114436892 + MIR SINE MIR 10 127 -135 480 345 42 0 chr11 34346604 34346820 -114436652 - MIR SINE MIR 0 262 39 419 209 0 0 chr11 34347053 34347144 -114436328 + MIR SINE MIR 69 159 -103 237 143 32 16 chr11 34347226 34347289 -114436183 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 213 163 0 20 chr11 34347482 34347531 -114435941 + MIR SINE MIR 159 206 -56 290 306 65 16 chr11 34348663 34348787 -114434685 + MIR3 SINE MIR 28 157 -51 367 257 38 55 chr11 34350409 34350594 -114432878 - MIR SINE MIR -65 143 10 2044 125 7 0 chr11 34350756 34351077 -114432395 + AluSq SINE Alu 2 324 0 1733 148 0 84 chr11 34352619 34352747 -114430725 + AluJo SINE Alu 1 138 -174 243 0 0 0 chr11 34352747 34352774 -114430698 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1733 148 0 84 chr11 34352774 34352799 -114430673 + AluJo SINE Alu 138 164 -148 1965 130 0 11 chr11 34352799 34353076 -114430396 + AluSq SINE Alu 1 274 -39 1733 148 0 84 chr11 34353076 34353253 -114430219 + AluJo SINE Alu 164 304 -8 237 269 0 0 chr11 34353791 34353843 -114429629 + L2 LINE L2 2594 2645 -669 2410 95 0 7 chr11 34354062 34354368 -114429104 + AluSg SINE Alu 1 304 -6 2015 75 10 78 chr11 34354521 34354814 -114428658 - AluSx SINE Alu -2 310 38 278 238 126 58 chr11 34355141 34355402 -114428070 + L1ME4a LINE L1 5843 6121 0 2457 197 20 18 chr11 34355538 34356035 -114427437 - MER119 DNA MER1_type 0 583 86 2439 60 0 32 chr11 34356035 34356349 -114427123 + AluSg SINE Alu 1 304 -6 255 79 0 0 chr11 34356378 34356416 -114427056 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2551 144 7 16 chr11 34357107 34357349 -114426123 + L1MB3 LINE L1 5728 5966 -217 2483 83 0 0 chr11 34357349 34357649 -114425823 + AluSg SINE Alu 1 300 -10 2551 144 7 16 chr11 34357649 34357851 -114425621 + L1MB3 LINE L1 5966 6168 -15 407 327 53 35 chr11 34358630 34358969 -114424503 + L2 LINE L2 2414 2758 -556 228 303 11 45 chr11 34359390 34359479 -114423993 + L2 LINE L2 3187 3272 0 469 202 22 0 chr11 34359674 34359763 -114423709 - Tigger5 DNA MER2_type 0 2323 2233 * 1973 164 19 115 chr11 34359762 34360095 -114423377 + MER101 LTR ERV1 11 374 -100 1600 87 50 9 chr11 34360095 34360313 -114423159 + AluSc SINE Alu 71 297 -12 2050 100 43 0 chr11 34360315 34360594 -114422878 + AluSq SINE Alu 1 291 -22 1973 164 19 115 chr11 34360594 34360639 -114422833 + MER101 LTR ERV1 375 423 -51 1502 109 9 5 chr11 34360639 34360849 -114422623 + AluSc SINE Alu 83 293 -16 1973 164 19 115 chr11 34360849 34360979 -114422493 + MER101 LTR ERV1 423 474 0 276 111 0 93 chr11 34360979 34361027 -114422445 - Tigger5 DNA MER2_type -86 2237 2195 506 202 161 8 chr11 34361041 34361165 -114422307 - Tigger5 DNA MER2_type -2150 173 31 382 188 21 21 chr11 34361932 34362028 -114421444 - MIR SINE MIR -25 237 142 261 246 14 43 chr11 34362162 34362231 -114421241 - L2 LINE L2 -1 3271 3205 21 0 0 0 chr11 34363083 34363104 -114420368 + AT_rich Low_complexity Low_complexity 1 21 0 248 290 57 32 chr11 34363162 34363286 -114420186 - L2 LINE L2 -65 3248 3122 310 181 106 32 chr11 34363322 34363416 -114420056 - L2 LINE L2 -287 3026 2926 1765 126 4 4 chr11 34363461 34363708 -114419764 + AluSq SINE Alu 1 247 -66 817 129 16 0 chr11 34363708 34363832 -114419640 + AluSg/x SINE Alu 183 308 -4 2642 185 47 48 chr11 34366006 34366827 -114416645 - LTR27 LTR ERV1 -10 1010 3 1891 158 10 3 chr11 34366832 34367135 -114416337 + AluJo SINE Alu 1 305 -7 564 282 28 14 chr11 34367774 34367990 -114415482 + L1ME4a LINE L1 5642 5860 -261 2383 67 37 3 chr11 34368032 34368332 -114415140 - AluY SINE Alu -1 310 1 26 0 0 0 chr11 34368333 34368359 -114415113 + AT_rich Low_complexity Low_complexity 1 26 0 1126 227 328 0 chr11 34368363 34368838 -114414634 + HAL1 LINE L1 177 807 -1700 893 172 53 0 chr11 34368843 34368994 -114414478 - AluJb SINE Alu -17 295 137 662 251 104 108 chr11 34368994 34369428 -114414044 + HAL1 LINE L1 798 1232 -1275 2219 123 10 0 chr11 34369428 34369729 -114413743 - AluSq SINE Alu -9 304 1 662 251 104 108 chr11 34369729 34369761 -114413711 + HAL1 LINE L1 1232 1263 -1244 2204 103 0 4 chr11 34369761 34370042 -114413430 + AluSg SINE Alu 11 290 -20 662 251 104 108 chr11 34370042 34370065 -114413407 + HAL1 LINE L1 1263 1285 -1222 2901 10 0 0 chr11 34370065 34370374 -114413098 + AluYa5 SINE Alu 1 309 -2 662 251 104 108 chr11 34370374 34370432 -114413040 + HAL1 LINE L1 1285 1342 -1165 2173 96 4 0 chr11 34370432 34370749 -114412723 + AluSg SINE Alu 1 318 0 662 251 104 108 chr11 34370749 34370946 -114412526 + HAL1 LINE L1 1342 1543 -964 819 230 71 0 chr11 34370967 34371163 -114412309 - MIR SINE MIR -28 234 25 1400 238 73 66 chr11 34371186 34371297 -114412175 + HAL1 LINE L1 1543 1652 -855 225 0 0 0 chr11 34371297 34371322 -114412150 + (TG)n Simple_repeat Simple_repeat 2 26 0 1400 238 73 66 chr11 34371322 34372015 -114411457 + HAL1 LINE L1 1652 2507 0 480 226 56 72 chr11 34372529 34372724 -114410748 - MLT1K LTR MaLR -1 587 396 230 136 23 0 chr11 34372811 34372855 -114410617 - MLT1K LTR MaLR -395 193 149 639 239 97 92 chr11 34373989 34374370 -114409102 + MLT1J LTR MaLR 110 492 -19 687 296 106 55 chr11 34374503 34374939 -114408533 + MLT1K LTR MaLR 125 582 -6 597 264 28 0 chr11 34375143 34375325 -114408147 + MIR SINE MIR 73 259 -3 2192 83 3 64 chr11 34375471 34375797 -114407675 + AluY SINE Alu 1 306 -5 281 243 0 129 chr11 34377075 34377215 -114406257 - MIR SINE MIR -19 243 122 1138 222 101 11 chr11 34377858 34378283 -114405189 + MER113 DNA MER1_type? 16 521 0 478 219 44 18 chr11 34378353 34378467 -114405005 + MIR3 SINE MIR 73 189 -19 349 278 159 66 chr11 34378865 34379092 -114404380 + MIR SINE MIR 13 260 -2 1625 181 16 0 chr11 34379126 34379430 -114404042 - AluJb SINE Alu -3 309 1 1441 84 5 0 chr11 34380282 34380472 -114403000 - AluSp SINE Alu -10 303 113 292 384 9 0 chr11 34380664 34380776 -114402696 - L2 LINE L2 -5 3267 3155 290 291 32 111 chr11 34380832 34381021 -114402451 + MIR SINE MIR 75 248 -14 31 26 0 0 chr11 34381064 34381102 -114402370 + AT_rich Low_complexity Low_complexity 1 38 0 353 317 125 56 chr11 34381964 34382283 -114401189 - L2 LINE L2 -4 3268 2928 2175 117 7 0 chr11 34382329 34382636 -114400836 + AluSx SINE Alu 1 309 -3 363 244 160 23 chr11 34383560 34383691 -114399781 - MER5A DNA MER1_type 0 189 41 946 231 48 15 chr11 34383692 34384164 -114399308 - MLT1F1 LTR MaLR -1 566 1 572 298 92 9 chr11 34384217 34384297 -114399175 + MIR SINE MIR 16 88 -174 2205 84 20 0 chr11 34384297 34384594 -114398878 + AluSx SINE Alu 1 303 -9 572 298 92 9 chr11 34384594 34384741 -114398731 + MIR SINE MIR 88 262 0 379 297 10 10 chr11 34385045 34385146 -114398326 + MER5A DNA MER1_type 89 189 0 191 35 0 35 chr11 34385989 34386018 -114397454 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 236 241 120 95 chr11 34386025 34386183 -114397289 - L2 LINE L2 -19 3294 3133 2266 93 7 0 chr11 34387064 34387366 -114396106 - AluSp SINE Alu -9 304 1 23 33 0 0 chr11 34387373 34387403 -114396069 + AT_rich Low_complexity Low_complexity 1 30 0 433 305 35 23 chr11 34388731 34388905 -114394567 - MIR SINE MIR -66 196 21 787 308 21 4 chr11 34389065 34389305 -114394167 - MIR SINE MIR -10 252 9 946 157 24 0 chr11 34390834 34391000 -114392472 + L1MB5 LINE L1 5721 5890 -284 2058 115 0 14 chr11 34391084 34391380 -114392092 + AluSx SINE Alu 1 292 -20 688 268 12 0 chr11 34391384 34391552 -114391920 + L2 LINE L2 2534 2703 -611 2949 151 39 19 chr11 34391554 34392125 -114391347 - L1MB5 LINE L1 0 6174 5593 695 95 29 0 chr11 34392125 34392224 -114391248 - L1MA4A LINE L1 -5 6298 6191 2351 73 0 3 chr11 34392276 34392577 -114390895 + AluY SINE Alu 1 300 -11 212 203 34 0 chr11 34392580 34392705 -114390767 + (TA)n Simple_repeat Simple_repeat 1 129 0 1887 136 31 0 chr11 34392705 34392991 -114390481 - AluSx SINE Alu -17 295 1 2062 122 0 13 chr11 34393679 34393958 -114389514 + AluSc SINE Alu 1 277 -32 185 0 40 0 chr11 34393958 34393983 -114389489 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2062 122 0 13 chr11 34393983 34394015 -114389457 + AluSc SINE Alu 277 308 -1 276 329 0 0 chr11 34394172 34394245 -114389227 - L2 LINE L2 -21 3251 3179 2047 168 139 22 chr11 34394249 34394701 -114388771 - MLT1D LTR MaLR 0 505 1 1207 106 6 0 chr11 34394849 34395019 -114388453 + AluSg/x SINE Alu 137 307 -5 263 242 219 29 chr11 34395154 34395384 -114388088 - L2 LINE L2 -484 2830 2645 1939 123 0 28 chr11 34395384 34395701 -114387771 - AluSx SINE Alu -2 310 3 263 242 219 29 chr11 34395701 34395821 -114387651 - L2 LINE L2 -669 2645 2413 392 258 11 0 chr11 34395906 34395999 -114387473 + MIR SINE MIR 169 262 0 2901 169 15 78 chr11 34396311 34396867 -114386605 - LTR9 LTR ERV1 0 612 101 2077 61 79 0 chr11 34396867 34397147 -114386325 + AluSq SINE Alu 1 302 -11 2901 169 15 78 chr11 34397147 34397243 -114386229 - LTR9 LTR ERV1 -511 101 1 2227 90 0 6 chr11 34397296 34397608 -114385864 - AluY SINE Alu -1 310 1 2077 118 0 16 chr11 34398638 34398944 -114384528 + AluSc SINE Alu 1 301 -8 243 109 236 0 chr11 34399082 34399137 -114384335 - THE1B LTR MaLR 0 364 297 2000 128 53 35 chr11 34399202 34399521 -114383951 - THE1B LTR MaLR -39 325 1 11907 91 9 9 chr11 34399521 34401101 -114382371 - THE1B-int LTR MaLR 0 1580 1 2487 105 28 30 chr11 34401103 34401466 -114382006 - THE1B LTR MaLR -2 362 1 807 66 0 0 chr11 34401554 34401660 -114381812 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1769 153 7 10 chr11 34401754 34402055 -114381417 - AluJo SINE Alu -12 300 1 3044 203 26 49 chr11 34402287 34403049 -114380423 - L1ME2 LINE L1 0 6164 5420 1961 155 45 17 chr11 34403052 34403407 -114380065 + MLT1A1 LTR MaLR 1 365 0 263 113 97 16 chr11 34403599 34403661 -114379811 + L1M4 LINE L1 5816 5882 -296 425 194 22 7 chr11 34403661 34403769 -114379703 + MER31B LTR ERV1 1 112 -373 384 40 0 0 chr11 34403771 34403821 -114379651 + (TG)n Simple_repeat Simple_repeat 2 51 0 692 174 0 0 chr11 34403823 34403932 -114379540 - FLAM_A SINE Alu -21 121 13 2014 113 0 7 chr11 34403966 34404257 -114379215 - AluSx SINE Alu -23 289 1 265 302 75 19 chr11 34404507 34404613 -114378859 + MIR SINE MIR 20 131 -77 527 173 182 0 chr11 34404715 34404825 -114378647 - MLT1C LTR MaLR -334 133 4 365 284 138 0 chr11 34404932 34405048 -114378424 + MIR3 SINE MIR 46 177 -31 327 49 0 0 chr11 34405089 34405130 -114378342 + (T)n Simple_repeat Simple_repeat 1 41 0 339 214 83 12 chr11 34405476 34405560 -114377912 - MIR SINE MIR -12 250 161 734 222 50 15 chr11 34405562 34405760 -114377712 + LTR41 LTR ERVL 1 205 -568 485 192 0 48 chr11 34406269 34406394 -114377078 + LTR41 LTR ERVL 654 772 -1 421 307 47 13 chr11 34406395 34406545 -114376927 - MIR SINE MIR -98 164 10 2167 109 6 3 chr11 34406679 34406990 -114376482 + AluSx SINE Alu 1 312 0 298 206 0 68 chr11 34407589 34407662 -114375810 + MIR3 SINE MIR 12 79 -129 524 233 13 88 chr11 34407775 34407892 -114375580 - MIR SINE MIR 0 262 159 2180 91 7 0 chr11 34407892 34408188 -114375284 - AluSc SINE Alu -11 298 1 524 233 13 88 chr11 34408188 34408229 -114375243 - MIR SINE MIR -103 159 116 505 263 58 45 chr11 34408454 34408610 -114374862 - MIR SINE MIR -48 214 57 389 188 104 73 chr11 34409233 34409329 -114374143 + MER63 DNA MER1_type 27 751 -85 422 70 18 0 chr11 34409423 34409480 -114373992 + Alu SINE Alu 2 59 -259 324 343 188 39 chr11 34409623 34409870 -114373602 + L2 LINE L2 2886 3197 -75 1907 156 82 30 chr11 34409870 34410275 -114373197 + MSTA LTR MaLR 3 428 0 324 343 188 39 chr11 34410275 34410362 -114373110 + L2 LINE L2 3197 3270 -2 308 344 133 6 chr11 34411671 34411851 -114371621 - MIR SINE MIR 0 262 60 396 301 90 15 chr11 34414095 34414228 -114369244 + MIR SINE MIR 4 146 -116 1026 160 5 56 chr11 34415552 34415765 -114367707 - MER20 DNA MER1_type 0 219 18 285 290 0 11 chr11 34416422 34416515 -114366957 + MER5A DNA MER1_type 11 102 -87 2216 74 0 3 chr11 34416675 34416958 -114366514 + AluSg SINE Alu 10 291 -19 886 131 0 0 chr11 34416975 34417105 -114366367 + AluSg/x SINE Alu 125 254 -56 407 192 136 33 chr11 34417167 34417318 -114366154 + MIR SINE MIR 25 188 -63 321 258 101 14 chr11 34417889 34418072 -114365400 - MIR SINE MIR -10 252 3 316 0 45 0 chr11 34419273 34419317 -114364155 + (CA)n Simple_repeat Simple_repeat 2 47 0 412 252 205 62 chr11 34421180 34421390 -114362082 - MIR SINE MIR -3 259 20 477 238 47 2 chr11 34422121 34422243 -114361229 + MIR SINE MIR 30 166 -63 1644 155 11 21 chr11 34422243 34422561 -114360911 - AluJb SINE Alu 0 315 1 23 33 0 0 chr11 34423076 34423106 -114360366 + AT_rich Low_complexity Low_complexity 1 30 0 237 298 158 0 chr11 34424284 34424398 -114359074 + MIR SINE MIR 123 254 -8 1694 161 16 16 chr11 34425168 34425472 -114358000 - AluJo SINE Alu -8 304 1 186 211 228 0 chr11 34425885 34425942 -114357530 + MIR SINE MIR 177 246 -16 1939 109 42 0 chr11 34426757 34427041 -114356431 - AluSx SINE Alu -16 296 1 213 252 81 45 chr11 34428471 34428582 -114354890 - MIR3 SINE MIR -3 205 91 1620 187 3 13 chr11 34428594 34428899 -114354573 - AluJb SINE Alu -10 302 1 666 300 16 16 chr11 34429841 34430031 -114353441 + MIR SINE MIR 2 191 -71 2009 160 55 3 chr11 34430039 34430154 -114353318 + L1MC2 LINE L1 5832 5940 -404 2618 61 0 3 chr11 34430154 34430466 -114353006 + AluY SINE Alu 1 311 0 2009 160 55 3 chr11 34430466 34430732 -114352740 + L1MC2 LINE L1 5940 6233 -111 194 289 0 0 chr11 34430750 34430795 -114352677 + MIR SINE MIR 199 243 -19 2905 145 84 19 chr11 34432188 34432780 -114350692 + L1MB8 LINE L1 5548 6178 0 2185 125 3 0 chr11 34432822 34433119 -114350353 - AluSx SINE Alu -14 298 1 200 203 31 62 chr11 34433119 34433183 -114350289 - MER5B DNA MER1_type -115 63 2 1668 182 23 17 chr11 34433828 34434130 -114349342 - AluJo SINE Alu -8 304 1 376 279 274 6 chr11 34434634 34434813 -114348659 - L3 LINE CR1 -4 1573 1347 2166 89 10 20 chr11 34434852 34435156 -114348316 - AluY SINE Alu -10 301 1 2371 81 10 0 chr11 34435271 34435569 -114347903 + AluSg SINE Alu 1 301 -9 658 335 133 24 chr11 34435832 34436283 -114347189 - L3 LINE CR1 -955 622 123 455 295 47 21 chr11 34436479 34436672 -114346800 - Charlie8 DNA MER1_type -2184 233 36 333 190 0 0 chr11 34436678 34436736 -114346736 + AluSp/q SINE Alu 233 290 -13 263 161 59 0 chr11 34436736 34436854 -114346618 + (TA)n Simple_repeat Simple_repeat 2 126 0 277 266 221 26 chr11 34436878 34437032 -114346440 + MIR SINE MIR 69 252 -10 441 243 36 27 chr11 34437047 34437158 -114346314 - MIR SINE MIR -108 154 43 1977 121 0 134 chr11 34437437 34437826 -114345646 - MER1B DNA MER1_type 0 337 1 25 0 0 0 chr11 34437901 34437926 -114345546 + AT_rich Low_complexity Low_complexity 1 25 0 2446 93 0 0 chr11 34438096 34438406 -114345066 + AluSx SINE Alu 1 310 -2 225 178 0 0 chr11 34439139 34439184 -114344288 + A-rich Low_complexity Low_complexity 1 45 0 2084 117 38 0 chr11 34439220 34439510 -114343962 + AluSx SINE Alu 1 301 -11 2319 106 0 6 chr11 34439511 34439909 -114343563 + AluSx SINE Alu 2 397 0 283 295 17 35 chr11 34439911 34440084 -114343388 + L1MC5 LINE L1 7354 7523 -438 21 0 0 0 chr11 34440443 34440464 -114343008 + AT_rich Low_complexity Low_complexity 1 21 0 403 261 97 70 chr11 34440503 34440735 -114342737 + L1M4 LINE L1 5030 5271 -875 1595 156 87 28 chr11 34440735 34441024 -114342448 - AluJo SINE Alu -5 307 2 403 261 97 70 chr11 34441024 34441048 -114342424 + L1M4 LINE L1 5271 5293 -853 707 230 53 129 chr11 34441049 34441197 -114342275 + L2 LINE L2 1502 1660 -1654 2230 115 3 16 chr11 34441197 34441510 -114341962 - AluSx SINE Alu -3 309 1 707 230 53 129 chr11 34441510 34441756 -114341716 + L2 LINE L2 1660 1866 -1448 322 196 54 108 chr11 34441828 34441976 -114341496 + L1ME4a LINE L1 5982 6121 0 234 0 0 0 chr11 34442348 34442374 -114341098 + (CA)n Simple_repeat Simple_repeat 2 27 0 320 331 99 6 chr11 34442740 34442912 -114340560 + L1ME4a LINE L1 5930 6117 -4 720 208 48 39 chr11 34444864 34445095 -114338377 - MER112 DNA MER1_type -16 244 12 458 299 80 49 chr11 34445120 34445344 -114338128 + MIR SINE MIR 21 251 -11 180 0 0 0 chr11 34445552 34445572 -114337900 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1878 154 0 7 chr11 34445575 34445854 -114337618 - AluJb SINE Alu -35 277 1 2200 127 0 0 chr11 34445874 34446173 -114337299 + AluSx SINE Alu 5 303 -9 200 323 0 0 chr11 34446553 34446618 -114336854 + GA-rich Low_complexity Low_complexity 4 68 0 2364 78 7 0 chr11 34446646 34446942 -114336530 + AluSp SINE Alu 1 298 -15 585 264 135 14 chr11 34448010 34448218 -114335254 + MIR SINE MIR 20 252 -10 2149 130 0 0 chr11 34450980 34451273 -114332199 - AluSx SINE Alu -19 293 1 228 200 0 0 chr11 34451366 34451406 -114332066 + Charlie5 DNA MER1_type 1 40 -2572 560 193 47 7 chr11 34451412 34451562 -114331910 + Charlie5 DNA MER1_type 2430 2585 -27 382 259 15 61 chr11 34451565 34451696 -114331776 + MIR SINE MIR 75 199 -63 312 237 93 10 chr11 34451774 34451871 -114331601 - MIR SINE MIR -51 211 107 195 42 0 0 chr11 34451960 34451984 -114331488 + (TAA)n Simple_repeat Simple_repeat 3 26 0 766 298 40 16 chr11 34454887 34455135 -114328337 + MIR SINE MIR 8 261 -1 2342 97 0 3 chr11 34455160 34455460 -114328012 + AluSc SINE Alu 1 299 -10 595 284 85 34 chr11 34455524 34455760 -114327712 + MIR SINE MIR 13 260 -2 2253 118 10 0 chr11 34456175 34456479 -114326993 + AluSx SINE Alu 1 307 -5 237 65 0 0 chr11 34461258 34461289 -114322183 + (A)n Simple_repeat Simple_repeat 1 31 0 621 69 0 0 chr11 34461684 34461771 -114321701 + (GA)n Simple_repeat Simple_repeat 2 88 0 1984 81 0 23 chr11 34462714 34462975 -114320497 - AluSx SINE Alu -10 302 48 193 161 0 0 chr11 34463193 34463224 -114320248 + MIR SINE MIR 46 76 -186 219 125 0 0 chr11 34466218 34466258 -114317214 + (CGG)n Simple_repeat Simple_repeat 2 41 0 225 159 0 0 chr11 34466693 34466737 -114316735 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 268 188 0 0 chr11 34469747 34469795 -114313677 - MIR SINE MIR -57 151 104 630 226 54 59 chr11 34469811 34469997 -114313475 + MIR SINE MIR 8 192 -70 255 330 43 21 chr11 34470050 34470144 -114313328 - MIR3 SINE MIR -110 98 3 297 0 0 0 chr11 34471352 34471385 -114312087 + (A)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr11 34472745 34472771 -114310701 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 214 349 73 28 chr11 34472786 34472895 -114310577 - L2 LINE L2 -40 3232 3119 426 258 200 0 chr11 34473187 34473342 -114310130 + MIR SINE MIR 76 261 -1 351 303 62 0 chr11 34473736 34473857 -114309615 + MIR SINE MIR 34 162 -46 303 274 141 15 chr11 34473968 34474103 -114309369 + MIR SINE MIR 90 241 -21 720 332 45 0 chr11 34474214 34474458 -114309014 + MIR SINE MIR 6 260 -2 321 255 43 0 chr11 34475321 34475415 -114308057 - MER94 DNA DNA -21 113 16 26 0 0 0 chr11 34475430 34475456 -114308016 + AT_rich Low_complexity Low_complexity 1 26 0 2313 116 3 0 chr11 34475966 34476277 -114307195 - AluSx SINE Alu 0 312 1 1144 131 22 83 chr11 34476403 34476632 -114306840 + MER20 DNA MER1_type 1 215 -4 2333 85 3 3 chr11 34476667 34476972 -114306500 + AluY SINE Alu 1 305 -6 430 290 107 0 chr11 34478773 34478904 -114304568 - MIR3 SINE MIR 0 208 64 2339 85 10 0 chr11 34479103 34479396 -114304076 + AluSq SINE Alu 1 296 -17 194 152 0 43 chr11 34480462 34480508 -114302964 + CT-rich Low_complexity Low_complexity 4 47 0 231 315 105 7 chr11 34480550 34480693 -114302779 - MIR SINE MIR -48 214 58 416 284 56 27 chr11 34482110 34482297 -114301175 - MIR SINE MIR 0 262 66 2383 84 0 34 chr11 34482297 34482617 -114300855 + AluSc SINE Alu 1 309 0 416 284 56 27 chr11 34482617 34482638 -114300834 - MIR SINE MIR -196 66 47 238 257 129 0 chr11 34482723 34482793 -114300679 - LTR33 LTR ERVL -2 519 441 1229 144 86 0 chr11 34482818 34483005 -114300467 - AluSg/x SINE Alu -24 286 84 1296 256 42 21 chr11 34483005 34483430 -114300042 - LTR33 LTR ERVL -64 457 24 703 272 22 0 chr11 34483432 34483656 -114299816 - HAL1 LINE L1 -854 1653 1425 2006 94 56 10 chr11 34483715 34484003 -114299469 + AluY SINE Alu 1 301 -10 312 27 0 0 chr11 34485592 34485629 -114297843 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 297 366 38 8 chr11 34485633 34485764 -114297708 - L2 LINE L2 -17 3255 3121 1666 92 0 14 chr11 34485765 34485983 -114297489 + AluSq SINE Alu 75 289 -24 528 324 48 0 chr11 34486055 34486262 -114297210 - MIR SINE MIR -40 222 6 311 306 73 54 chr11 34486288 34486610 -114296862 - L2 LINE L2 -190 3082 2741 2257 115 0 0 chr11 34486892 34487180 -114296292 + AluSx SINE Alu 1 288 -24 1394 232 53 65 chr11 34487503 34488012 -114295460 + MLT1D LTR MaLR 1 503 -2 414 187 47 28 chr11 34488038 34488145 -114295327 - MER117 DNA MER1_type -48 149 41 622 231 66 23 chr11 34488273 34488471 -114295001 + MIR SINE MIR 45 252 -10 2413 89 3 10 chr11 34488535 34488849 -114294623 - AluSx SINE Alu 0 312 1 213 398 0 9 chr11 34488932 34489040 -114294432 - L2 LINE L2 -727 2587 2481 2297 104 0 0 chr11 34489348 34489647 -114293825 + AluSg SINE Alu 1 299 -11 2394 82 0 23 chr11 34489726 34490031 -114293441 - AluY SINE Alu -13 298 1 411 303 77 13 chr11 34490907 34491062 -114292410 + MIR3 SINE MIR 37 201 -7 227 252 25 76 chr11 34491119 34491165 -114292307 + L1ME4a LINE L1 5548 5595 -526 1588 177 0 47 chr11 34491165 34491345 -114292127 - AluJo SINE Alu -5 307 147 2216 86 45 0 chr11 34491345 34491635 -114291837 - AluY SINE Alu -8 303 1 1588 177 0 47 chr11 34491635 34491776 -114291696 - AluJo SINE Alu -165 147 1 227 252 25 76 chr11 34491776 34491848 -114291624 + L1ME4a LINE L1 5595 5660 -461 237 233 81 47 chr11 34491852 34491938 -114291534 + L1ME4a LINE L1 5685 5773 -2035 587 135 18 27 chr11 34492191 34492293 -114291179 + Charlie5 DNA MER1_type 12 114 -2510 2221 98 0 33 chr11 34492293 34492599 -114290873 - AluSg SINE Alu -14 296 1 1864 154 33 0 chr11 34492611 34492910 -114290562 - AluJb SINE Alu -3 309 1 1251 144 0 5 chr11 34492988 34493361 -114290111 + AluSg/x SINE Alu 110 310 0 209 180 20 0 chr11 34493870 34493920 -114289552 + GA-rich Low_complexity Low_complexity 3 53 0 208 219 0 0 chr11 34494288 34494329 -114289143 + L2 LINE L2 3205 3245 -27 2095 129 10 0 chr11 34494340 34494649 -114288823 - AluSx SINE Alu 0 312 1 2451 53 0 0 chr11 34494824 34495138 -114288334 - AluY SINE Alu 0 314 1 277 332 101 34 chr11 34495138 34495436 -114288036 - L2 LINE L2 -10 3303 2986 1717 182 3 3 chr11 34495920 34496216 -114287256 + AluJb SINE Alu 11 306 -6 904 238 32 11 chr11 34496290 34496572 -114286900 - L1MA4 LINE L1 -2 6298 6011 254 203 0 17 chr11 34496815 34496874 -114286598 - L1MC/D LINE L1 -2016 5792 5735 2289 89 0 7 chr11 34496912 34497193 -114286279 - AluSc SINE Alu -29 280 2 324 93 0 0 chr11 34498186 34498229 -114285243 - MADE1 DNA Mariner -37 43 1 324 219 52 0 chr11 34498280 34498376 -114285096 + L1ME4a LINE L1 6008 6108 -13 296 256 50 41 chr11 34498426 34498536 -114284936 + L1MD2 LINE L1 5051 5164 -982 2059 97 0 4 chr11 34498536 34498803 -114284669 + AluSx SINE Alu 1 266 -46 580 198 160 44 chr11 34498856 34499183 -114284289 + L1MD2 LINE L1 5149 5486 -744 613 173 0 0 chr11 34499188 34499292 -114284180 + FLAM_C SINE Alu 38 141 -2 2937 199 81 85 chr11 34499302 34499419 -114284053 + L1MD2 LINE L1 5495 5611 -748 1719 184 0 14 chr11 34499419 34499712 -114283760 - AluJb SINE Alu -23 289 1 2937 199 81 85 chr11 34499712 34500155 -114283317 + L1MD2 LINE L1 5611 6052 -307 2108 97 29 0 chr11 34500155 34500434 -114283038 - AluSq SINE Alu -26 287 1 2937 199 81 85 chr11 34500434 34500739 -114282733 + L1MD2 LINE L1 6052 6357 -2 1574 182 62 56 chr11 34500873 34500913 -114282559 - L1MB5 LINE L1 -10 6164 6126 1530 170 24 27 chr11 34500913 34501207 -114282265 - AluJo SINE Alu -19 293 1 1574 182 62 56 chr11 34501207 34501556 -114281916 - L1MB5 LINE L1 -48 6126 5773 418 194 0 0 chr11 34501583 34501650 -114281822 - AluJ/FLAM SINE Alu -244 68 2 183 156 0 0 chr11 34501687 34501719 -114281753 + CT-rich Low_complexity Low_complexity 2 33 0 2116 127 10 0 chr11 34501727 34502034 -114281438 - AluSg SINE Alu 0 310 1 434 345 0 25 chr11 34502781 34502981 -114280491 - MIR SINE MIR -12 250 56 2253 110 0 0 chr11 34503041 34503333 -114280139 + AluSx SINE Alu 10 301 -11 551 267 148 14 chr11 34503333 34503543 -114279929 + MIR SINE MIR 22 259 -3 641 283 108 0 chr11 34503848 34504060 -114279412 - ERVL LTR ERVL -5504 260 26 2462 65 16 7 chr11 34504060 34504368 -114279104 + AluY SINE Alu 1 311 0 715 144 9 9 chr11 34504410 34504521 -114278951 + MER66B LTR ERV1 373 483 -3 633 170 22 67 chr11 34504666 34504882 -114278590 + MER66A LTR ERV1 97 245 -233 1214 162 10 0 chr11 34504883 34505081 -114278391 - AluJb SINE Alu -10 302 103 299 250 221 15 chr11 34505426 34505562 -114277910 - MIR3 SINE MIR -43 165 2 1744 188 3 3 chr11 34505890 34506178 -114277294 + AluJb SINE Alu 5 292 -20 1153 135 0 0 chr11 34506291 34506454 -114277018 + AluSg/x SINE Alu 134 296 -16 2353 155 6 77 chr11 34506464 34506892 -114276580 - MER66B LTR ERV1 0 486 29 2087 122 34 3 chr11 34506892 34507186 -114276286 + AluSx SINE Alu 1 303 -9 2124 105 44 10 chr11 34507187 34507481 -114275991 + AluSp SINE Alu 1 304 -9 2353 155 6 77 chr11 34507481 34507573 -114275899 - MER66B LTR ERV1 -456 30 1 2259 113 0 0 chr11 34508422 34508722 -114274750 + AluY SINE Alu 1 300 -11 567 291 51 8 chr11 34508996 34509233 -114274239 - MIR SINE MIR -1 261 15 671 259 128 4 chr11 34511366 34511609 -114271863 - L1ME3A LINE L1 -229 5941 5669 2266 94 0 57 chr11 34511666 34511997 -114271475 + AluSx SINE Alu 1 312 0 681 255 82 57 chr11 34511999 34512224 -114271248 - LTR16C LTR ERVL -21 470 235 2682 49 0 0 chr11 34512224 34512532 -114270940 + AluY SINE Alu 1 308 -3 681 255 82 57 chr11 34512532 34512588 -114270884 - LTR16C LTR ERVL -256 235 182 441 70 0 0 chr11 34513187 34513281 -114270191 + Alu SINE Alu 225 318 0 798 206 6 6 chr11 34513843 34514008 -114269464 + FRAM SINE Alu 1 165 -11 1554 141 20 184 chr11 34514104 34514151 -114269321 - MLT2D LTR ERVL 0 414 361 279 0 0 0 chr11 34514151 34514182 -114269290 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 141 20 184 chr11 34514182 34514515 -114268957 - MLT2D LTR ERVL -53 361 131 2473 93 0 0 chr11 34514515 34514825 -114268647 + AluY SINE Alu 1 310 -1 1554 141 20 184 chr11 34514825 34514938 -114268534 - MLT2D LTR ERVL -283 131 1 539 313 38 0 chr11 34514942 34515102 -114268370 + MER117 DNA MER1_type 32 197 0 2408 109 0 0 chr11 34515201 34515513 -114267959 - AluSx SINE Alu 0 312 1 656 250 162 80 chr11 34515570 34516034 -114267438 + L1ME3A LINE L1 5669 6170 0 1032 114 0 0 chr11 34516268 34516400 -114267072 - AluSq/x SINE Alu -180 132 1 186 297 176 22 chr11 34516481 34516572 -114266900 - L2 LINE L2 -41 3231 3127 1768 171 0 14 chr11 34517505 34517798 -114265674 - AluJo SINE Alu -23 289 1 2243 108 0 7 chr11 34517961 34518256 -114265216 + AluSg SINE Alu 1 293 -17 530 153 0 0 chr11 34518290 34518375 -114265097 - FRAM SINE Alu -18 158 74 288 310 30 10 chr11 34518544 34518644 -114264828 - L2 LINE L2 0 3313 3212 367 158 79 0 chr11 34519019 34519095 -114264377 - L1MB3 LINE L1 -2 6181 6100 2078 133 0 7 chr11 34519107 34519400 -114264072 - AluSg SINE Alu -19 291 1 839 152 0 0 chr11 34519432 34519564 -114263908 - FLAM_C SINE Alu -1 132 1 2572 66 0 0 chr11 34519696 34520000 -114263472 - AluY SINE Alu -7 304 1 1824 115 4 0 chr11 34520468 34520721 -114262751 - AluSx SINE Alu 0 312 59 2254 77 10 7 chr11 34520934 34521231 -114262241 + AluSx SINE Alu 5 302 -10 483 75 0 0 chr11 34521413 34521480 -114261992 + L1MA7 LINE L1 6222 6288 -3 246 318 59 59 chr11 34522282 34522452 -114261020 - MIR3 SINE MIR -33 175 6 682 190 37 101 chr11 34522735 34522828 -114260644 - L1MC4 LINE L1 -262 7780 7683 1532 171 0 40 chr11 34522828 34523103 -114260369 - AluJb SINE Alu -47 265 2 682 190 37 101 chr11 34523103 34523277 -114260195 - L1MC4 LINE L1 -359 7683 7530 434 307 7 0 chr11 34524357 34524497 -114258975 + L1ME4a LINE L1 5696 5836 -285 1819 173 3 0 chr11 34524557 34524841 -114258631 - AluJo SINE Alu -27 285 1 2903 164 14 18 chr11 34525233 34525667 -114257805 + L1MB8 LINE L1 5466 5899 -285 2533 58 0 0 chr11 34525667 34525961 -114257511 + AluY SINE Alu 1 294 -17 2903 164 14 18 chr11 34525961 34526039 -114257433 + L1MB8 LINE L1 5899 5976 -208 1834 120 8 0 chr11 34526077 34526335 -114257137 + AluSq SINE Alu 1 260 -53 1704 150 0 4 chr11 34526713 34526980 -114256492 - AluSg SINE Alu -10 300 35 196 216 0 0 chr11 34527167 34527204 -114256268 - L2 LINE L2 0 3313 3277 1561 244 107 28 chr11 34527593 34528209 -114255263 + Charlie2a DNA MER1_type 1549 2213 -649 1035 121 0 20 chr11 34528227 34528376 -114255096 + AluSq/x SINE Alu 1 146 -166 748 219 285 17 chr11 34528382 34528589 -114254883 + Charlie2a DNA MER1_type 2343 2493 -369 2145 119 0 3 chr11 34528589 34528884 -114254588 + AluSx SINE Alu 1 294 -18 748 219 285 17 chr11 34528884 34529086 -114254386 + Charlie2a DNA MER1_type 2493 2862 0 837 118 65 20 chr11 34529249 34529402 -114254070 - MSTB LTR MaLR -73 353 194 22 0 0 0 chr11 34529415 34529437 -114254035 + AT_rich Low_complexity Low_complexity 1 22 0 1326 154 66 39 chr11 34529438 34529697 -114253775 - AluSx SINE Alu -46 266 1 1078 136 10 45 chr11 34529700 34529899 -114253573 - MSTB LTR MaLR -234 192 1 911 188 5 21 chr11 34529899 34530085 -114253387 + L1MB8 LINE L1 5971 6153 -25 2130 133 0 10 chr11 34530293 34530602 -114252870 - AluSg SINE Alu -4 306 1 1966 142 10 0 chr11 34531475 34531764 -114251708 - AluJb SINE Alu -20 292 1 198 191 0 0 chr11 34532081 34532123 -114251349 + A-rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr11 34533203 34533226 -114250246 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3737 108 39 25 chr11 34533415 34533935 -114249537 + MER1A DNA MER1_type 1 527 0 439 282 0 0 chr11 34534300 34534403 -114249069 - MER5A DNA MER1_type -83 106 4 2056 115 24 0 chr11 34535222 34535509 -114247963 + AluSq SINE Alu 1 294 -19 2052 96 0 0 chr11 34535517 34535777 -114247695 + AluSc SINE Alu 42 301 -8 2079 234 74 26 chr11 34536242 34536771 -114246701 - MLT1H1 LTR MaLR -1 554 1 477 90 0 0 chr11 34536905 34536972 -114246500 + (TTC)n Simple_repeat Simple_repeat 1 67 0 1375 174 33 26 chr11 34536972 34537242 -114246230 - AluJo SINE Alu -38 274 3 33 25 0 0 chr11 34537691 34537731 -114245741 + AT_rich Low_complexity Low_complexity 1 40 0 904 143 78 0 chr11 34538030 34538184 -114245288 + L1MB7 LINE L1 6003 6168 -16 2164 136 0 13 chr11 34540187 34540321 -114243151 + AluSx SINE Alu 1 135 -177 2167 109 3 0 chr11 34540321 34540604 -114242868 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr11 34540604 34540633 -114242839 + (CA)n Simple_repeat Simple_repeat 2 30 0 2164 136 0 13 chr11 34540633 34540813 -114242659 + AluSx SINE Alu 133 312 0 363 155 0 0 chr11 34541543 34541601 -114241871 - MLT1C LTR MaLR -8 497 440 2400 95 7 0 chr11 34541601 34541948 -114241524 + AluSg SINE Alu 1 349 0 1134 208 88 60 chr11 34541948 34542343 -114241129 - MLT1C LTR MaLR -52 415 5 243 182 52 39 chr11 34542728 34542805 -114240667 + LTR33A LTR ERVL 446 523 0 26 30 0 0 chr11 34542834 34542867 -114240605 + AT_rich Low_complexity Low_complexity 1 33 0 1776 134 0 0 chr11 34542867 34543161 -114240311 + AluSx SINE Alu 30 323 0 1107 160 48 39 chr11 34543230 34543251 -114240221 + L1MC3 LINE L1 6006 6025 -1760 2274 92 7 0 chr11 34543251 34543545 -114239927 - AluSx SINE Alu -16 296 1 1107 160 48 39 chr11 34543545 34543754 -114239718 + L1MC3 LINE L1 6025 6238 -1547 2237 103 10 0 chr11 34543756 34544048 -114239424 + AluSx SINE Alu 3 297 -15 1124 141 0 0 chr11 34544048 34544211 -114239261 + AluSg/x SINE Alu 132 294 -16 525 196 10 0 chr11 34544212 34544314 -114239158 + L1MC3 LINE L1 6224 6326 -1459 897 279 17 86 chr11 34544470 34544715 -114238757 + MER102b DNA MER1_type 1 215 -1213 2209 99 3 10 chr11 34544715 34545019 -114238453 - AluSx SINE Alu -10 302 1 897 279 17 86 chr11 34545019 34545135 -114238337 + MER102b DNA MER1_type 215 337 -4 2518 67 0 6 chr11 34545338 34545651 -114237821 - AluY SINE Alu 0 311 1 1711 221 63 50 chr11 34547204 34547291 -114236181 - MLT1D LTR MaLR 0 505 421 2446 86 0 0 chr11 34547291 34547593 -114235879 - AluSg SINE Alu -8 302 1 1711 221 63 50 chr11 34547593 34547984 -114235488 - MLT1D LTR MaLR -84 421 21 2335 216 96 84 chr11 34548246 34548505 -114234967 + L1MC5 LINE L1 6693 6948 -1013 1999 136 7 0 chr11 34548505 34548792 -114234680 - AluSq SINE Alu -18 295 7 2335 216 96 84 chr11 34548792 34549185 -114234287 + L1MC5 LINE L1 6948 7363 -598 2109 104 0 0 chr11 34549185 34549481 -114233991 + AluY SINE Alu 16 311 0 2335 216 96 84 chr11 34549481 34549785 -114233687 + L1MC5 LINE L1 7363 7662 -299 1993 125 0 22 chr11 34549798 34550117 -114233355 - AluSx SINE Alu 0 312 1 4927 157 45 2 chr11 34550117 34550954 -114232518 - L1MC1 LINE L1 -3 6330 5458 1670 123 4 15 chr11 34550955 34551216 -114232256 + AluSx SINE Alu 54 311 -1 424 103 23 103 chr11 34551504 34551559 -114231913 + L1MA9 LINE L1 6002 6049 -263 1729 194 3 0 chr11 34551559 34551853 -114231619 + AluJo SINE Alu 1 295 -17 424 103 23 103 chr11 34551853 34551884 -114231588 + L1MA9 LINE L1 6049 6081 -231 2376 101 0 0 chr11 34551963 34552260 -114231212 - AluSg SINE Alu -13 297 1 621 142 44 0 chr11 34552451 34552564 -114230908 + L1MB8 LINE L1 6001 6118 -60 2041 143 16 0 chr11 34552931 34553238 -114230234 - AluSx SINE Alu 0 312 1 2195 119 3 0 chr11 34553245 34553548 -114229924 - AluSx SINE Alu -8 304 1 464 244 6 61 chr11 34553936 34554100 -114229372 - MIR SINE MIR -33 229 75 303 308 63 53 chr11 34554073 34554391 -114229081 + L2 LINE L2 2652 2972 -342 * 467 282 5 74 chr11 34554551 34554753 -114228719 + L2 LINE L2 3107 3294 -19 2428 71 3 0 chr11 34555051 34555345 -114228127 + AluY SINE Alu 1 295 -16 189 0 0 0 chr11 34555345 34555366 -114228106 + (GA)n Simple_repeat Simple_repeat 2 22 0 2121 95 0 0 chr11 34555611 34555884 -114227588 + AluSq SINE Alu 39 311 -2 207 294 131 65 chr11 34556218 34556432 -114227040 - L2 LINE L2 -40 3232 3005 180 77 0 0 chr11 34556551 34556577 -114226895 + (TG)n Simple_repeat Simple_repeat 2 27 0 832 147 51 70 chr11 34556708 34556864 -114226608 - AluJo SINE Alu -159 153 1 2296 91 3 19 chr11 34556869 34557178 -114226294 - AluSq SINE Alu -9 304 1 2362 85 0 0 chr11 34557192 34557485 -114225987 - AluSc SINE Alu -16 293 1 2602 168 16 9 chr11 34557895 34558318 -114225154 - MSTB LTR MaLR 0 426 1 1676 245 29 8 chr11 34558554 34558938 -114224534 + LTR40b LTR ERVL 5 396 -66 2169 101 7 0 chr11 34558948 34559244 -114224228 + AluSx SINE Alu 1 298 -14 376 220 97 112 chr11 34559995 34560263 -114223209 - MLT1J LTR MaLR -50 461 198 2052 134 7 0 chr11 34560275 34560580 -114222892 + AluSq SINE Alu 1 307 -6 340 163 1 51 chr11 34560580 34560682 -114222790 - L1P3 LINE L1 -673 5481 5388 311 245 57 38 chr11 34560695 34560801 -114222671 + L1ME3A LINE L1 6058 6165 -5 189 74 0 0 chr11 34560991 34561018 -114222454 + (CA)n Simple_repeat Simple_repeat 1 27 0 2082 118 17 0 chr11 34561038 34561327 -114222145 + AluSx SINE Alu 1 294 -18 784 259 106 90 chr11 34562007 34562508 -114220964 - MLT1J LTR MaLR 0 511 3 24 53 0 0 chr11 34562567 34562605 -114220867 + AT_rich Low_complexity Low_complexity 1 38 0 248 266 156 37 chr11 34562660 34562769 -114220703 - L2 LINE L2 0 3272 3151 2040 95 53 14 chr11 34562878 34563163 -114220309 - AluSq SINE Alu -17 296 1 1842 105 127 0 chr11 34563546 34563813 -114219659 - AluSx SINE Alu -6 306 6 2115 177 101 40 chr11 34563816 34564319 -114219153 - LTR64 LTR ERVK -24 534 1 445 117 117 0 chr11 34564330 34564407 -114219065 + LTR1 LTR ERV1 83 168 -617 279 0 0 0 chr11 34564407 34564438 -114219034 + (TG)n Simple_repeat Simple_repeat 2 32 0 409 151 14 14 chr11 34564476 34564549 -114218923 + LTR1 LTR ERV1 91 163 -622 378 0 0 0 chr11 34564552 34564594 -114218878 + (TG)n Simple_repeat Simple_repeat 2 43 0 296 262 39 19 chr11 34564821 34564924 -114218548 - L2 LINE L2 0 3272 3168 818 223 34 48 chr11 34565048 34565317 -114218155 - L1ME1 LINE L1 -2 6164 5900 244 143 0 82 chr11 34565383 34565432 -114218040 - Alu SINE Alu -9 292 248 711 191 6 37 chr11 34565449 34565611 -114217861 - L1ME1 LINE L1 -311 5855 5699 2628 154 60 23 chr11 34565628 34566141 -114217331 + L1MB7 LINE L1 5588 6119 -65 2171 99 0 7 chr11 34566144 34566438 -114217034 - AluSx SINE Alu -20 292 1 764 227 121 0 chr11 34566455 34566653 -114216819 - L1ME1 LINE L1 -458 5708 5487 2392 66 0 3 chr11 34567443 34567746 -114215726 + AluY SINE Alu 1 302 -9 2048 118 3 44 chr11 34569065 34569380 -114214092 + AluSq SINE Alu 1 302 -11 933 136 102 0 chr11 34570432 34570608 -114212864 - L1MA4 LINE L1 -14 6286 6093 2448 88 0 0 chr11 34571226 34571533 -114211939 + AluSg SINE Alu 1 307 -3 583 247 114 0 chr11 34571911 34572069 -114211403 + MIR SINE MIR 12 187 -75 2318 78 3 3 chr11 34572298 34572594 -114210878 - AluSp SINE Alu -17 296 1 1408 166 85 7 chr11 34573241 34573512 -114209960 + MER58B DNA MER1_type 49 340 -1 2324 84 3 0 chr11 34573970 34574266 -114209206 - AluY SINE Alu -14 297 1 21 0 0 0 chr11 34574503 34574524 -114208948 + AT_rich Low_complexity Low_complexity 1 21 0 220 367 6 17 chr11 34575085 34575265 -114208207 + (CCA)n Simple_repeat Simple_repeat 1 178 0 837 183 79 49 chr11 34575909 34576073 -114207399 - FAM SINE Alu -5 170 2 588 249 130 108 chr11 34576503 34576940 -114206532 + L2 LINE L2 2867 3313 0 293 227 43 85 chr11 34577621 34577762 -114205710 + MIR SINE MIR 100 234 -28 1905 124 16 42 chr11 34578346 34578652 -114204820 - AluSx SINE Alu -14 298 1 2182 97 3 31 chr11 34579428 34579747 -114203725 + AluY SINE Alu 1 310 -1 1934 155 3 0 chr11 34579760 34580050 -114203422 + AluSx SINE Alu 20 310 -2 25 51 0 0 chr11 34582142 34582181 -114201291 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 34582612 34582635 -114200837 + AT_rich Low_complexity Low_complexity 1 23 0 286 328 107 15 chr11 34582918 34583049 -114200423 + MIR3 SINE MIR 47 189 -19 226 313 45 0 chr11 34584176 34584243 -114199229 + MIR SINE MIR 2 71 -191 403 167 83 12 chr11 34584273 34584357 -114199115 + MIR SINE MIR 171 260 -2 201 94 0 0 chr11 34584619 34584651 -114198821 + (A)n Simple_repeat Simple_repeat 1 32 0 349 214 150 14 chr11 34586519 34586659 -114196813 - L1ME4a LINE L1 -1 6120 5962 261 217 250 0 chr11 34586706 34586826 -114196646 - L1ME4a LINE L1 -260 5861 5712 1679 197 27 0 chr11 34586910 34587210 -114196262 + AluJb SINE Alu 1 308 -4 1584 154 60 15 chr11 34587250 34587516 -114195956 - AluJb SINE Alu -22 290 13 2263 97 0 3 chr11 34587969 34588269 -114195203 - AluSg SINE Alu -11 299 1 180 0 0 0 chr11 34588278 34588298 -114195174 + (T)n Simple_repeat Simple_repeat 1 20 0 269 245 0 0 chr11 34588499 34588552 -114194920 + MIR SINE MIR 81 133 -75 649 231 58 0 chr11 34589405 34589584 -114193888 - MER58A DNA MER1_type 0 224 35 243 270 0 48 chr11 34589632 34589695 -114193777 + L2 LINE L2 3213 3272 0 196 259 224 35 chr11 34589759 34589875 -114193597 + MIR SINE MIR 3 140 -122 1650 99 144 4 chr11 34589926 34590189 -114193283 - AluSg SINE Alu 0 300 1 2910 0 0 0 chr11 34590198 34590509 -114192963 - AluYa5 SINE Alu 0 311 1 202 327 190 15 chr11 34590536 34590741 -114192731 + L3b LINE CR1 1339 1579 -4 1988 102 57 78 chr11 34590883 34591255 -114192217 - THE1B LTR MaLR 0 364 1 11108 86 47 6 chr11 34591255 34592773 -114190699 - THE1B-int LTR MaLR 0 1580 1 2329 126 22 22 chr11 34592773 34592899 -114190573 - THE1B LTR MaLR 0 364 239 2362 75 0 33 chr11 34592899 34593206 -114190266 - AluY SINE Alu -14 297 1 2329 126 22 22 chr11 34593206 34593443 -114190029 - THE1B LTR MaLR -124 240 1 1618 178 50 3 chr11 34595586 34595884 -114187588 + AluJb SINE Alu 1 312 0 289 266 0 0 chr11 34598707 34598771 -114184701 - L3 LINE CR1 -69 1508 1445 231 397 95 4 chr11 34598795 34599027 -114184445 - L2 LINE L2 -1313 2001 1749 1045 165 0 6 chr11 34599591 34599761 -114183711 - FAM SINE Alu -5 170 2 574 365 80 25 chr11 34599823 34600421 -114183051 - L2 LINE L2 -18 3295 2665 504 215 120 19 chr11 34600470 34600628 -114182844 + MER112 DNA MER1_type 82 255 -5 459 362 36 7 chr11 34600685 34600964 -114182508 - L2 LINE L2 -731 2583 2297 5806 119 33 13 chr11 34601002 34601664 -114181808 - L1PA16 LINE L1 -9 6157 5458 2045 151 3 0 chr11 34601664 34601969 -114181503 - AluSx SINE Alu -6 306 1 5806 119 33 13 chr11 34601969 34602409 -114181063 - L1PA16 LINE L1 -708 5458 5028 1704 183 0 7 chr11 34602508 34602787 -114180685 + AluJo SINE Alu 3 279 -33 713 194 6 0 chr11 34602833 34603008 -114180464 + GA-rich Low_complexity Low_complexity 1 176 0 1006 243 100 82 chr11 34603156 34603531 -114179941 - MLT1F1 LTR MaLR -37 530 143 1727 72 0 9 chr11 34603531 34603754 -114179718 + AluY SINE Alu 87 307 -4 1006 243 100 82 chr11 34603754 34603900 -114179572 - MLT1F1 LTR MaLR -424 143 1 7036 110 13 6 chr11 34603953 34605804 -114177668 + L1PA8 LINE L1 4301 6172 0 2003 132 7 0 chr11 34606099 34606422 -114177050 - AluSg SINE Alu 0 325 1 1399 216 20 10 chr11 34606470 34606771 -114176701 - AluJb SINE Alu -8 304 1 764 239 31 89 chr11 34606968 34607172 -114176300 + L1ME LINE L1 5414 5595 -526 1792 122 32 32 chr11 34607172 34607487 -114175985 + AluSc SINE Alu 1 315 0 764 239 31 89 chr11 34607487 34607589 -114175883 + L1ME LINE L1 5595 5701 -420 293 138 0 52 chr11 34607679 34607737 -114175735 + L1M4 LINE L1 5563 5617 -557 * 2934 63 0 18 chr11 34607735 34608118 -114175354 + L1PA6 LINE L1 5586 5961 -193 5092 42 0 2 chr11 34608120 34608749 -114174723 - L1P LINE L1 -3719 2427 1798 13096 34 0 0 chr11 34608749 34611101 -114172371 + L1PA4 LINE L1 3792 6155 0 3335 279 85 39 chr11 34611186 34612536 -114170936 + L1MEc LINE L1 44 1508 -4888 1979 83 65 0 chr11 34612536 34612812 -114170660 - AluSg SINE Alu -16 294 1 3335 279 85 39 chr11 34612812 34613372 -114170100 + L1MEc LINE L1 1508 2041 -4355 342 189 0 189 chr11 34613381 34613432 -114170040 + MER58A DNA MER1_type 2 61 -280 217 0 61 0 chr11 34613432 34613465 -114170007 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 342 189 0 189 chr11 34613465 34613480 -114169992 + MER58A DNA MER1_type 61 43 -298 2026 121 7 0 chr11 34613480 34613760 -114169712 - AluSx SINE Alu -30 282 1 342 189 0 189 chr11 34613760 34613803 -114169669 + MER58A DNA MER1_type 42 91 -133 421 145 60 0 chr11 34613805 34613888 -114169584 + L1MB4 LINE L1 6093 6180 0 2410 206 22 50 chr11 34613982 34614662 -114168810 + L1MEc LINE L1 2341 3001 -3214 230 71 0 0 chr11 34614662 34614690 -114168782 + Alu SINE Alu 87 114 -188 599 66 74 0 chr11 34614690 34614811 -114168661 + GA-rich Low_complexity Low_complexity 5 134 0 725 152 101 29 chr11 34614820 34614958 -114168514 + AluJb SINE Alu 135 282 -30 210 171 0 0 chr11 34614967 34615008 -114168464 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1633 198 36 68 chr11 34615047 34615336 -114168136 - L1M4 LINE L1 -3213 2933 2636 1958 150 0 0 chr11 34615336 34615643 -114167829 - AluSx SINE Alu -5 307 1 1633 198 36 68 chr11 34615643 34615720 -114167752 - L1M4 LINE L1 -3510 2636 2558 204 40 0 0 chr11 34615720 34615745 -114167727 + (TG)n Simple_repeat Simple_repeat 2 26 0 1633 198 36 68 chr11 34615745 34615846 -114167626 - L1M4 LINE L1 -3588 2558 2480 894 217 38 4 chr11 34615900 34616163 -114167309 + L1MEc LINE L1 2997 3268 -2947 992 97 0 0 chr11 34616167 34616301 -114167171 - AluSc SINE Alu -7 302 169 697 226 41 41 chr11 34616317 34616560 -114166912 + L1MEc LINE L1 3263 3505 -2710 2950 179 37 13 chr11 34616564 34617106 -114166366 - MER68 LTR ERV1 -7 555 1 2673 233 92 36 chr11 34617113 34617958 -114165514 + L1MEc LINE L1 3506 4302 -1913 653 236 0 0 chr11 34617958 34618081 -114165391 + FLAM_A SINE Alu 1 123 -10 2673 233 92 36 chr11 34618081 34618763 -114164709 + L1MEc LINE L1 4302 5139 -1076 543 265 77 6 chr11 34619132 34619302 -114164170 - MIR SINE MIR -78 184 3 38 68 0 0 chr11 34619314 34619387 -114164085 + AT_rich Low_complexity Low_complexity 1 73 0 202 220 0 0 chr11 34619765 34619815 -114163657 + (TTA)n Simple_repeat Simple_repeat 2 51 0 933 316 103 66 chr11 34619919 34620125 -114163347 + L2 LINE L2 1528 1725 -1589 2259 92 23 0 chr11 34620125 34620428 -114163044 - AluSg SINE Alu 0 310 1 933 316 103 66 chr11 34620428 34620717 -114162755 + L2 LINE L2 1725 2002 -1312 228 67 0 0 chr11 34620717 34620747 -114162725 + (CA)n Simple_repeat Simple_repeat 2 31 0 933 316 103 66 chr11 34620747 34621447 -114162025 + L2 LINE L2 2002 2768 -546 2276 105 7 0 chr11 34621589 34621894 -114161578 - AluSc SINE Alu -2 307 1 2081 103 4 4 chr11 34621983 34622264 -114161208 + AluSx SINE Alu 1 281 -31 318 325 65 8 chr11 34622439 34622562 -114160910 + L2 LINE L2 3179 3308 -5 2357 95 3 0 chr11 34622562 34622866 -114160606 - AluSx SINE Alu -7 305 1 2115 86 7 4 chr11 34623853 34624133 -114159339 + AluY SINE Alu 1 281 -30 240 35 0 0 chr11 34624138 34624167 -114159305 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 31 0 0 0 chr11 34624518 34624549 -114158923 + AT_rich Low_complexity Low_complexity 1 31 0 264 167 0 0 chr11 34624813 34624861 -114158611 + (TA)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr11 34625048 34625084 -114158388 + AT_rich Low_complexity Low_complexity 1 36 0 302 245 49 35 chr11 34626020 34626163 -114157309 - L1ME4a LINE L1 -96 6025 5881 3654 107 77 37 chr11 34626485 34627159 -114156313 - Tigger3b DNA MER2_type 0 1232 532 3106 82 48 0 chr11 34627159 34627597 -114155875 + L1PA15 LINE L1 5699 6157 -8 1123 121 12 0 chr11 34627600 34627773 -114155699 - L1MB4 LINE L1 -17 6163 5989 1465 231 55 28 chr11 34627782 34628180 -114155292 - L1ME1 LINE L1 -67 6099 5691 3124 139 35 26 chr11 34628185 34628397 -114155075 - Tigger3b DNA MER2_type -2483 545 336 2383 97 3 0 chr11 34628397 34628706 -114154766 - AluSg SINE Alu 0 310 1 3124 139 35 26 chr11 34628706 34629032 -114154440 - Tigger3b DNA MER2_type -2692 336 2 1397 244 109 35 chr11 34629296 34629817 -114153655 - HAL1 LINE L1 -566 1941 1382 1573 246 182 18 chr11 34629824 34630205 -114153267 - HAL1 LINE L1 -1178 1329 1012 2319 152 62 0 chr11 34630205 34630606 -114152866 - MSTB LTR MaLR 0 426 1 1573 246 182 18 chr11 34630606 34630895 -114152577 - HAL1 LINE L1 -1495 1012 549 392 264 73 45 chr11 34630934 34631112 -114152360 + MER63A DNA MER1_type 27 209 -1 411 254 139 29 chr11 34631150 34631323 -114152149 - HAL1 LINE L1 -2044 463 272 279 204 91 0 chr11 34631358 34631446 -114152026 - HAL1 LINE L1 -2312 195 100 308 280 112 0 chr11 34631565 34631672 -114151800 - L2 LINE L2 -1 3312 3194 2242 105 3 0 chr11 34631672 34631968 -114151504 - AluSq SINE Alu -16 297 1 260 154 0 0 chr11 34631991 34632030 -114151442 + U2 snRNA snRNA 1 39 -149 332 293 120 30 chr11 34633375 34633542 -114149930 + MIR3 SINE MIR 19 200 -8 2783 258 83 74 chr11 34633958 34634893 -114148579 - MER45C DNA AcHobo -9 944 1 1289 119 0 0 chr11 34635273 34635478 -114147994 + AluSg/x SINE Alu 133 337 0 234 91 0 0 chr11 34636201 34636234 -114147238 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 248 191 0 0 chr11 34636977 34637019 -114146453 - L2 LINE L2 -7 3265 3224 188 333 0 0 chr11 34636987 34637053 -114146419 - MIR SINE MIR -11 251 186 * 2020 127 3 3 chr11 34637273 34637591 -114145881 - AluSx SINE Alu 0 318 1 440 323 42 61 chr11 34638546 34638936 -114144536 - L2 LINE L2 -238 3034 2660 2370 49 0 7 chr11 34639182 34639496 -114143976 - AluY SINE Alu 0 312 1 297 278 202 71 chr11 34639572 34639924 -114143548 + LTR67 LTR ERVL 154 551 -6 261 344 123 0 chr11 34640093 34640256 -114143216 - L2 LINE L2 -1096 2218 2036 872 282 52 8 chr11 34640613 34640861 -114142611 + LTR33 LTR ERVL 6 264 -257 1228 206 5 0 chr11 34640861 34641079 -114142393 + AluJo SINE Alu 26 244 -68 210 71 0 0 chr11 34641141 34641169 -114142303 + (A)n Simple_repeat Simple_repeat 1 28 0 808 250 22 52 chr11 34641171 34641443 -114142029 + LTR33 LTR ERVL 258 521 0 187 296 139 61 chr11 34641799 34642029 -114141443 - L2 LINE L2 -672 2642 2395 266 265 105 50 chr11 34642769 34642950 -114140522 - MLT1L LTR MaLR -1 614 424 382 260 4 3 chr11 34643044 34643140 -114140332 - MLT1L LTR MaLR -329 259 149 234 0 0 0 chr11 34643347 34643373 -114140099 + (A)n Simple_repeat Simple_repeat 1 26 0 29 28 0 0 chr11 34643578 34643614 -114139858 + AT_rich Low_complexity Low_complexity 1 36 0 1762 158 10 17 chr11 34643660 34643951 -114139521 + AluJo SINE Alu 1 289 -23 2931 81 15 0 chr11 34644423 34644829 -114138643 - L1PA5 LINE L1 -5 6149 5738 41348 60 6 2 chr11 34644830 34650928 -114132544 - L1PA5 LINE L1 -29 6125 1 556 259 24 35 chr11 34651026 34651186 -114132286 + MIR SINE MIR 4 176 -32 213 196 65 0 chr11 34651197 34651243 -114132229 - L2 LINE L2 -4 3309 3261 4552 92 24 8 chr11 34652443 34653110 -114130362 - L1MA2 LINE L1 0 6304 5627 2449 74 0 0 chr11 34653358 34653656 -114129816 + AluY SINE Alu 1 298 -13 186 43 0 0 chr11 34654516 34654539 -114128933 + (A)n Simple_repeat Simple_repeat 1 23 0 2008 126 31 0 chr11 34655186 34655472 -114128000 + AluSx SINE Alu 1 295 -17 1509 127 24 0 chr11 34656149 34656402 -114127070 + L1MC1 LINE L1 5254 5512 -832 699 135 36 0 chr11 34656402 34656499 -114126973 + L1MC1 LINE L1 6201 6315 -18 36 0 0 0 chr11 34656502 34656538 -114126934 + AT_rich Low_complexity Low_complexity 1 36 0 1167 257 136 15 chr11 34656824 34657280 -114126192 - LTR33 LTR ERVL 0 521 11 575 305 27 42 chr11 34657541 34657803 -114125669 - MLT1L LTR MaLR 0 615 358 754 336 129 19 chr11 34658030 34658402 -114125070 + L2 LINE L2 2857 3269 -3 21 0 0 0 chr11 34658631 34658652 -114124820 + AT_rich Low_complexity Low_complexity 1 21 0 1430 180 8 4 chr11 34659668 34659918 -114123554 + AluJo SINE Alu 49 299 -13 185 235 20 20 chr11 34660246 34660297 -114123175 + L2 LINE L2 3217 3267 -5 2287 104 0 13 chr11 34660789 34661097 -114122375 + AluSg SINE Alu 1 304 -6 2185 125 3 0 chr11 34661114 34661419 -114122053 + AluSq SINE Alu 1 306 -7 461 273 186 5 chr11 34661432 34661652 -114121820 + MIR SINE MIR 3 262 0 2267 98 3 3 chr11 34661720 34662016 -114121456 + AluSg SINE Alu 1 296 -14 183 42 0 0 chr11 34662027 34662051 -114121421 + (CA)n Simple_repeat Simple_repeat 2 25 0 2177 114 3 3 chr11 34662474 34662781 -114120691 - AluSx SINE Alu -5 307 1 24 0 0 0 chr11 34665037 34665061 -114118411 + AT_rich Low_complexity Low_complexity 1 24 0 1433 158 4 0 chr11 34666204 34666438 -114117034 - MER46A DNA MER2_type -1 235 1 831 247 40 13 chr11 34666805 34667032 -114116440 - L2 LINE L2 0 3313 3081 207 0 0 0 chr11 34667160 34667183 -114116289 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1577 176 0 18 chr11 34667194 34667466 -114116006 - AluJo SINE Alu -41 271 5 352 279 106 11 chr11 34667552 34667817 -114115655 - L1ME4a LINE L1 -240 5881 5592 1434 182 26 11 chr11 34667835 34668104 -114115368 + AluJb SINE Alu 18 290 -22 240 167 50 0 chr11 34668115 34668175 -114115297 - L1ME4a LINE L1 -675 5567 5505 189 0 0 0 chr11 34668267 34668288 -114115184 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 1549 288 164 36 chr11 34668306 34668836 -114114636 - L2 LINE L2 0 3313 2852 2531 70 0 0 chr11 34668836 34669137 -114114335 - AluSc SINE Alu -8 301 1 1549 288 164 36 chr11 34669137 34669589 -114113883 - L2 LINE L2 -461 2852 2183 30 0 0 0 chr11 34669963 34669993 -114113479 + AT_rich Low_complexity Low_complexity 1 30 0 2509 233 49 10 chr11 34670582 34671808 -114111664 + L1MC4 LINE L1 6468 7898 -144 262 324 0 19 chr11 34671951 34672056 -114111416 + L1MEd LINE L1 103 205 -5914 830 267 64 63 chr11 34672330 34672846 -114110626 + L1MEd LINE L1 511 1030 -5089 2255 79 0 0 chr11 34672846 34673126 -114110346 + AluY SINE Alu 16 295 -16 830 267 64 63 chr11 34673126 34673295 -114110177 + L1MEd LINE L1 1030 1197 -4922 2329 118 36 36 chr11 34673419 34673552 -114109920 - L1MC1 LINE L1 0 6333 6201 2202 109 104 15 chr11 34673552 34673945 -114109527 + MSTA LTR MaLR 1 428 0 2329 118 36 36 chr11 34673945 34674165 -114109307 - L1MC1 LINE L1 -132 6201 5977 2106 117 3 3 chr11 34674165 34674463 -114109009 - AluSq SINE Alu -15 298 1 2329 118 36 36 chr11 34674463 34674525 -114108947 - L1MC1 LINE L1 -355 5978 5917 1903 157 45 22 chr11 34674525 34674884 -114108588 - L1MC1 LINE L1 -743 5403 5074 2575 62 0 0 chr11 34674884 34675189 -114108283 + AluY SINE Alu 1 305 -6 1903 157 45 22 chr11 34675189 34675369 -114108103 - L1MC1 LINE L1 -1072 5074 4900 29 70 0 0 chr11 34675612 34675669 -114107803 + AT_rich Low_complexity Low_complexity 1 57 0 182 220 60 40 chr11 34675669 34675719 -114107753 - MIR3 SINE MIR -13 195 145 224 404 21 11 chr11 34675876 34675970 -114107502 - MIR3 SINE MIR -52 156 62 194 243 114 43 chr11 34676236 34676306 -114107166 + L2 LINE L2 3150 3224 -48 7320 43 1 1 chr11 34676657 34677567 -114105905 + L1P LINE L1 3614 4523 -1623 1063 96 0 0 chr11 34677574 34677720 -114105752 + L1PA6 LINE L1 6004 6149 -5 2270 105 0 0 chr11 34678206 34678501 -114104971 + AluSx SINE Alu 3 297 -15 27 0 0 0 chr11 34679066 34679093 -114104379 + AT_rich Low_complexity Low_complexity 1 27 0 1810 138 31 31 chr11 34679557 34679847 -114103625 - AluJb SINE Alu -22 290 1 1444 178 0 20 chr11 34680002 34680255 -114103217 - AluJo SINE Alu -64 248 1 1128 230 65 100 chr11 34680263 34680595 -114102877 - L1MC4 LINE L1 -88 7954 7612 1853 132 4 0 chr11 34680595 34680860 -114102612 - AluSx SINE Alu -3 309 44 1128 230 65 100 chr11 34680860 34680915 -114102557 - L1MC4 LINE L1 -430 7612 7557 1337 118 0 5 chr11 34680915 34681119 -114102353 - L1PA15 LINE L1 0 6165 5963 1128 230 65 100 chr11 34681119 34681136 -114102336 - L1MC4 LINE L1 -485 7557 7541 2714 42 0 0 chr11 34681136 34681447 -114102025 - AluY SINE Alu 0 311 1 1128 230 65 100 chr11 34681447 34681719 -114101753 - L1MC4 LINE L1 -501 7541 7300 595 204 61 8 chr11 34681784 34681916 -114101556 + L2 LINE L2 3171 3309 -4 260 399 53 15 chr11 34681911 34682044 -114101428 + L2 LINE L2 3112 3249 -23 * 36 62 0 0 chr11 34682135 34682199 -114101273 + AT_rich Low_complexity Low_complexity 1 64 0 3189 38 13 2 chr11 34682603 34682999 -114100473 + L1PA5 LINE L1 5738 6137 -17 29 0 0 0 chr11 34682999 34683028 -114100444 + AT_rich Low_complexity Low_complexity 1 29 0 550 295 24 24 chr11 34683587 34683753 -114099719 + MIR3 SINE MIR 15 180 -28 24 0 0 0 chr11 34683887 34683911 -114099561 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 34683957 34683978 -114099494 + AT_rich Low_complexity Low_complexity 1 21 0 673 203 8 0 chr11 34684147 34684275 -114099197 - FLAM_A SINE Alu -3 130 2 1388 157 97 41 chr11 34684540 34684807 -114098665 + AluJo SINE Alu 1 302 0 181 0 0 0 chr11 34684807 34684827 -114098645 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 260 351 94 10 chr11 34685730 34685932 -114097540 - L3b LINE CR1 -87 1496 1278 1983 146 3 3 chr11 34686220 34686508 -114096964 - AluJb SINE Alu -24 288 1 198 118 0 0 chr11 34686723 34686757 -114096715 + (CAA)n Simple_repeat Simple_repeat 1 34 0 650 246 147 22 chr11 34687019 34687116 -114096356 - HAL1 LINE L1 -115 2392 2308 4586 193 113 100 chr11 34687116 34688849 -114094623 + MER52A LTR ERV1 1 1755 0 650 246 147 22 chr11 34688849 34689064 -114094408 - HAL1 LINE L1 -199 2308 2041 335 309 41 36 chr11 34689803 34689997 -114093475 + MER110-int LTR ERV1 2117 2311 -4490 475 266 35 89 chr11 34690367 34690626 -114092846 + MER110-int LTR ERV1 203 447 -4200 10901 206 18 11 chr11 34691066 34692417 -114091055 - L1 LINE L1 -1038 5108 3729 1943 156 10 0 chr11 34692417 34692718 -114090754 - AluSx SINE Alu -8 304 1 10901 206 18 11 chr11 34692718 34693945 -114089527 - L1 LINE L1 -2417 3729 2512 754 208 11 0 chr11 34693943 34694121 -114089351 + L1PB1 LINE L1 5090 5269 -877 * 5135 92 39 0 chr11 34694123 34694893 -114088579 + L1PB1 LINE L1 5352 6151 0 655 333 40 19 chr11 34694901 34695276 -114088196 + MER110-int LTR ERV1 3078 3460 -3341 1978 107 52 60 chr11 34695285 34695687 -114087785 + L1MA7 LINE L1 5892 6290 -1 428 314 21 37 chr11 34696210 34696401 -114087071 + MER110-int LTR ERV1 3531 3718 -3083 1438 286 79 39 chr11 34696659 34697319 -114086153 + MER110-int LTR ERV1 1718 2403 -2244 1272 202 32 9 chr11 34697881 34698178 -114085294 + MER58B DNA MER1_type 37 340 -1 327 223 20 99 chr11 34698180 34698382 -114085090 + MER110-int LTR ERV1 3026 3211 -1436 718 278 19 10 chr11 34698402 34698607 -114084865 + MER110-int LTR ERV1 4362 4568 -79 249 33 0 0 chr11 34698615 34698645 -114084827 + (CA)n Simple_repeat Simple_repeat 2 31 0 699 213 79 135 chr11 34698835 34699282 -114084190 + MER110 LTR ERV1 80 483 -8 311 288 104 7 chr11 34699361 34699649 -114083823 - L1M4 LINE L1 -1198 4948 4633 2007 134 3 3 chr11 34699686 34699978 -114083494 - AluJo SINE Alu -12 300 9 2185 122 38 24 chr11 34700824 34701194 -114082278 - THE1C LTR MaLR 0 375 1 478 272 156 22 chr11 34701318 34701689 -114081783 + L1MCc LINE L1 -293 127 -5999 351 289 44 29 chr11 34702016 34702247 -114081225 + L1MCc LINE L1 652 865 -5260 1669 208 60 25 chr11 34702379 34702864 -114080608 + L1MCc LINE L1 734 1235 -5307 3247 236 50 11 chr11 34702866 34703898 -114079574 + L1M4 LINE L1 3328 4400 -1746 691 213 14 16 chr11 34703895 34704104 -114079368 + L1ME2 LINE L1 5965 6165 -1 * 2199 124 0 20 chr11 34704142 34704448 -114079024 - AluSx SINE Alu -12 300 1 2459 67 0 13 chr11 34704720 34705020 -114078452 - AluY SINE Alu -15 296 1 963 251 111 43 chr11 34705113 34705528 -114077944 - MLT1L LTR MaLR 0 615 173 899 301 21 0 chr11 34705896 34706132 -114077340 - MIR SINE MIR -19 243 3 26 0 0 0 chr11 34706955 34706981 -114076491 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr11 34707042 34707084 -114076388 + AT_rich Low_complexity Low_complexity 1 42 0 444 348 41 12 chr11 34707677 34707921 -114075551 + MER102b DNA MER1_type 70 320 -21 1733 162 33 24 chr11 34708262 34708596 -114074876 + MER44D DNA MER2_type 2 608 -1 208 206 0 103 chr11 34708799 34708867 -114074605 + MIR3 SINE MIR 148 208 0 849 250 67 43 chr11 34709329 34710086 -114073386 + L1M3de LINE L1 780 3004 -3125 * 2895 190 183 129 chr11 34710084 34710454 -114073018 - L1MD3 LINE L1 -231 7764 7415 289 227 62 94 chr11 34710454 34710582 -114072890 - MLT1L LTR MaLR -443 124 1 2895 190 183 129 chr11 34710582 34710696 -114072776 - L1MD3 LINE L1 -580 7415 7309 2231 98 0 0 chr11 34710696 34710993 -114072479 - AluSg1 SINE Alu -12 297 1 2895 190 183 129 chr11 34710993 34711093 -114072379 - L1MD3 LINE L1 -686 7309 7216 1802 181 3 0 chr11 34711093 34711381 -114072091 + AluJo SINE Alu 1 289 -23 2895 190 183 129 chr11 34711381 34711814 -114071658 - L1MD3 LINE L1 -779 7216 6808 2213 103 0 0 chr11 34711814 34712128 -114071344 - AluSx SINE Alu 0 314 1 5084 93 19 8 chr11 34712135 34712863 -114070609 - L1PA11 LINE L1 0 6174 5439 2895 190 183 129 chr11 34712863 34713522 -114069950 - L1MD3 LINE L1 -1192 6803 5852 393 283 85 42 chr11 34713525 34713834 -114069638 - L1MEc LINE L1 -4729 1804 1368 38890 66 5 5 chr11 34713911 34717547 -114065925 + L1PA5 LINE L1 1 3636 -2518 2102 22 0 0 chr11 34717547 34717776 -114065696 - SVA Other Other -2 1384 1156 38890 66 5 5 chr11 34717776 34720061 -114063411 + L1PA5 LINE L1 3636 5920 -234 447 106 0 0 chr11 34720061 34720127 -114063345 + (TA)n Simple_repeat Simple_repeat 2 67 0 282 228 29 25 chr11 34720135 34720247 -114063225 - AluSp SINE Alu -111 192 96 14969 151 22 16 chr11 34720323 34720353 -114063119 - L1MA3 LINE L1 0 7724 7696 387 0 0 0 chr11 34720353 34720396 -114063076 + (TG)n Simple_repeat Simple_repeat 2 44 0 14969 151 22 16 chr11 34720396 34720455 -114063017 - L1MA3 LINE L1 -28 7696 7639 2044 126 10 17 chr11 34720455 34720756 -114062716 + AluSx SINE Alu 1 299 -13 14969 151 22 16 chr11 34720756 34724776 -114058696 - L1MA3 LINE L1 -85 7639 3594 6696 73 2 0 chr11 34724791 34726416 -114057056 - L1PA7 LINE L1 -11 6143 4514 1448 73 24 69 chr11 34726416 34726663 -114056809 + L1P LINE L1 2763 2998 -3148 28162 105 16 22 chr11 34726670 34731200 -114052272 - L1PA7 LINE L1 -1635 4511 11 20863 118 51 16 chr11 34731207 34732986 -114050486 - L1MA3 LINE L1 -3955 3610 1894 2392 85 0 3 chr11 34732986 34733291 -114050181 - AluSg SINE Alu -6 304 1 20863 118 51 16 chr11 34733291 34734979 -114048493 - L1MA3 LINE L1 -5671 1894 22 240 173 77 0 chr11 34734982 34735034 -114048438 - MLT1H1 LTR MaLR -33 522 467 292 267 34 48 chr11 34735681 34735827 -114047645 - L1ME LINE L1 -622 5499 5356 1572 173 17 50 chr11 34735932 34736233 -114047239 - AluJo SINE Alu -21 291 1 1769 159 9 55 chr11 34736407 34736585 -114046887 - AluJb SINE Alu 0 312 154 2248 117 0 3 chr11 34736585 34736885 -114046587 - AluSx SINE Alu -11 301 3 1769 159 9 55 chr11 34736885 34737033 -114046439 - AluJb SINE Alu -158 154 1 342 209 79 79 chr11 34737214 34737353 -114046119 - L1ME LINE L1 -1436 4710 4572 550 250 85 26 chr11 34737366 34737638 -114045834 + L1MEd LINE L1 914 1201 -4918 448 313 216 3 chr11 34737639 34737930 -114045542 + L1MEd LINE L1 1216 1568 -4561 2395 102 0 0 chr11 34738000 34738305 -114045167 - AluSg SINE Alu -3 307 3 2286 84 0 0 chr11 34738375 34738659 -114044813 + AluSg SINE Alu 1 284 -26 328 240 0 62 chr11 34738664 34738760 -114044712 + L1MC4 LINE L1 6614 6703 -1339 301 260 0 62 chr11 34738756 34738852 -114044620 - L1MC4 LINE L1 -1339 6703 6614 * 302 273 23 23 chr11 34738858 34738946 -114044526 - L1MC4 LINE L1 -1341 6701 6614 334 272 0 22 chr11 34738966 34739058 -114044414 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739094 34739188 -114044284 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739198 34739292 -114044180 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739302 34739396 -114044076 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739406 34739500 -114043972 - L1MC4 LINE L1 -1339 6703 6614 345 261 0 22 chr11 34739508 34739600 -114043872 - L1MC4 LINE L1 -1339 6703 6614 980 244 21 42 chr11 34740073 34740405 -114043067 + L1ME2 LINE L1 5665 5989 -175 24 67 0 0 chr11 34740434 34740479 -114042993 + AT_rich Low_complexity Low_complexity 1 45 0 2299 162 71 53 chr11 34740603 34741096 -114042376 - MLT1D LTR MaLR -3 502 1 21 36 0 0 chr11 34742125 34742153 -114041319 + AT_rich Low_complexity Low_complexity 1 28 0 1908 121 0 4 chr11 34742441 34742705 -114040767 - AluSx SINE Alu -1 311 49 3439 230 46 22 chr11 34743890 34744767 -114038705 - L1MD2 LINE L1 -10 6349 5452 2410 150 0 0 chr11 34744898 34745259 -114038213 - MLT2D LTR ERVL -46 368 8 22978 80 7 6 chr11 34745750 34748868 -114034604 + L1PA5 LINE L1 2 3121 -3025 15996 38 0 0 chr11 34748877 34751606 -114031866 + L1PA5 LINE L1 3438 6154 0 22 35 0 0 chr11 34751666 34751695 -114031777 + AT_rich Low_complexity Low_complexity 1 29 0 280 353 10 0 chr11 34751715 34751817 -114031655 + L1MEd LINE L1 534 636 -5483 995 197 0 0 chr11 34751817 34751995 -114031477 + FRAM SINE Alu 1 175 -1 812 262 58 4 chr11 34751998 34752273 -114031199 + L1ME LINE L1 5298 5587 -575 1697 248 68 37 chr11 34752300 34752813 -114030659 - MLT1H LTR MaLR -18 531 3 198 376 60 7 chr11 34752815 34752964 -114030508 + L2 LINE L2 2923 3079 -193 910 242 118 48 chr11 34753110 34753582 -114029890 - MLT1H LTR MaLR -8 547 21 242 361 21 7 chr11 34753794 34753938 -114029534 + MLT1-int LTR MaLR 399 544 -827 289 270 27 0 chr11 34754257 34754331 -114029141 + MLT1-int LTR MaLR 804 879 -492 347 235 25 0 chr11 34755216 34755297 -114028175 + MLT1H1 LTR MaLR 463 545 -10 333 221 126 16 chr11 34755324 34755451 -114028021 - HAL1 LINE L1 -1556 951 811 692 256 101 48 chr11 34755451 34755888 -114027584 + L1MC4 LINE L1 7566 8025 -17 3499 144 60 26 chr11 34755901 34756583 -114026889 + L1MB8 LINE L1 5468 6172 -6 1586 174 28 28 chr11 34756627 34756914 -114026558 + AluJo SINE Alu 9 295 -17 411 293 50 92 chr11 34756914 34757314 -114026158 - HAL1 LINE L1 -1703 804 422 238 288 215 18 chr11 34757434 34757597 -114025875 - HAL1 LINE L1 -2311 196 2 25 0 0 0 chr11 34757774 34757799 -114025673 + AT_rich Low_complexity Low_complexity 1 25 0 194 349 17 114 chr11 34757951 34758126 -114025346 - L2 LINE L2 -108 3164 3007 21 57 0 0 chr11 34758150 34758185 -114025287 + AT_rich Low_complexity Low_complexity 1 35 0 338 247 13 13 chr11 34758289 34758366 -114025106 + L2 LINE L2 3222 3298 -15 812 294 92 46 chr11 34758375 34758766 -114024706 + L2 LINE L2 2905 3313 0 218 329 0 0 chr11 34759148 34759230 -114024242 + CT-rich Low_complexity Low_complexity 1 82 0 183 80 0 0 chr11 34759921 34759946 -114023526 + (TA)n Simple_repeat Simple_repeat 2 26 0 594 103 0 0 chr11 34760058 34760145 -114023327 + (TA)n Simple_repeat Simple_repeat 1 87 0 2227 113 3 22 chr11 34760208 34760526 -114022946 - AluSx SINE Alu 0 312 1 26 64 0 0 chr11 34760781 34760828 -114022644 + AT_rich Low_complexity Low_complexity 1 47 0 779 199 21 7 chr11 34761257 34761398 -114022074 + MER5A DNA MER1_type 2 144 -45 2086 105 46 0 chr11 34761651 34761936 -114021536 + AluSq SINE Alu 1 298 -15 725 300 113 51 chr11 34762458 34762991 -114020481 - MLT1K LTR MaLR -22 566 1 1998 149 0 0 chr11 34763113 34763401 -114020071 + AluSx SINE Alu 1 288 -24 30 27 0 0 chr11 34763401 34763438 -114020034 + AT_rich Low_complexity Low_complexity 1 37 0 496 266 83 41 chr11 34763505 34763795 -114019677 + L1ME LINE L1 5513 5814 -307 854 231 91 12 chr11 34763797 34764039 -114019433 - MIR SINE MIR 0 262 2 1376 174 0 5 chr11 34764042 34764266 -114019206 + AluJb SINE Alu 70 292 -20 4889 254 114 50 chr11 34764348 34764960 -114018512 + HAL1 LINE L1 3 575 -1932 3620 114 6 21 chr11 34764960 34765495 -114017977 + MER1A DNA MER1_type 1 527 0 4889 254 114 50 chr11 34765495 34766556 -114016916 + HAL1 LINE L1 575 1567 -940 1846 114 81 92 chr11 34766556 34766925 -114016547 - MLT1A1 LTR MaLR 0 365 1 4889 254 114 50 chr11 34766925 34767169 -114016303 + HAL1 LINE L1 1567 1794 -713 2218 97 7 3 chr11 34767169 34767467 -114016005 + AluSp SINE Alu 1 299 -14 4889 254 114 50 chr11 34767467 34767819 -114015653 + HAL1 LINE L1 1794 2418 -89 2134 104 31 0 chr11 34768013 34768302 -114015170 + AluSq SINE Alu 1 298 -15 324 211 0 101 chr11 34768356 34768465 -114015007 - MER112 DNA MER1_type -151 109 12 1975 147 6 13 chr11 34768511 34768824 -114014648 - AluJb SINE Alu 0 312 2 377 216 180 36 chr11 34768935 34769074 -114014398 + MIR SINE MIR 49 207 -55 237 120 84 0 chr11 34769474 34769616 -114013856 + (TA)n Simple_repeat Simple_repeat 1 154 0 35 24 0 0 chr11 34769625 34769667 -114013805 + AT_rich Low_complexity Low_complexity 1 42 0 2015 128 31 0 chr11 34771598 34771887 -114011585 - AluJo SINE Alu -14 298 1 518 379 70 28 chr11 34772531 34772610 -114010862 - L2 LINE L2 0 3272 3198 1856 162 0 7 chr11 34772610 34772907 -114010565 + AluJo SINE Alu 1 295 -17 518 379 70 28 chr11 34772907 34773257 -114010215 - L2 LINE L2 -74 3198 2825 26 30 0 0 chr11 34773807 34773840 -114009632 + AT_rich Low_complexity Low_complexity 1 33 0 290 227 250 8 chr11 34774494 34774626 -114008846 - MER103 DNA DNA -1 165 2 1654 157 3 43 chr11 34774792 34775097 -114008375 + AluJb SINE Alu 1 293 -19 375 23 0 0 chr11 34775098 34775142 -114008330 + (CA)n Simple_repeat Simple_repeat 1 44 0 442 263 0 66 chr11 34775324 34775476 -114007996 - MER112 DNA MER1_type -17 243 102 300 179 12 95 chr11 34775529 34775613 -114007859 + MER103 DNA DNA 11 87 -79 384 262 99 81 chr11 34775864 34776098 -114007374 + MIR SINE MIR 25 262 0 207 0 0 0 chr11 34776725 34776748 -114006724 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2342 57 4 0 chr11 34776751 34777031 -114006441 - AluSx SINE Alu -31 281 1 1031 62 0 0 chr11 34777983 34778113 -114005359 - AluY SINE Alu -9 302 173 213 324 14 0 chr11 34778641 34778715 -114004757 + L2 LINE L2 2897 2971 -301 * 910 305 78 22 chr11 34778701 34779101 -114004371 - L2 LINE L2 -718 2596 2175 2316 112 0 3 chr11 34779568 34779881 -114003591 - AluSq SINE Alu -1 312 1 590 295 65 5 chr11 34780041 34780241 -114003231 - L1ME LINE L1 -406 5715 5504 566 280 59 0 chr11 34780648 34780834 -114002638 - MER117 DNA MER1_type 0 197 1 933 256 26 0 chr11 34781057 34781291 -114002181 + MIR SINE MIR 13 252 -10 3272 137 12 30 chr11 34781296 34781901 -114001571 + L1MB7 LINE L1 5587 6180 -4 1998 141 7 0 chr11 34782265 34782548 -114000924 - AluJb SINE Alu -16 296 12 21 36 0 0 chr11 34782802 34782830 -114000642 + AT_rich Low_complexity Low_complexity 1 28 0 1775 141 14 24 chr11 34782960 34783250 -114000222 - AluJo SINE Alu -21 291 5 412 258 141 39 chr11 34783461 34783570 -113999902 - L1ME LINE L1 -545 5576 5480 189 0 0 0 chr11 34783570 34783591 -113999881 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 412 258 141 39 chr11 34783591 34784038 -113999434 - L1ME LINE L1 -641 5480 4966 378 171 0 24 chr11 34785384 34785466 -113998006 + MER116 DNA Mariner 1 80 0 856 182 0 0 chr11 34785784 34785927 -113997545 + FLAM_C SINE Alu 1 143 0 2300 96 0 0 chr11 34785990 34786281 -113997191 + AluSx SINE Alu 1 291 -21 753 164 0 0 chr11 34786548 34786664 -113996808 - FRAM SINE Alu -21 155 40 246 51 26 0 chr11 34786674 34786713 -113996759 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2040 143 4 0 chr11 34786713 34786993 -113996479 - AluSx SINE Alu -31 281 1 21 36 0 0 chr11 34787139 34787167 -113996305 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 35 0 chr11 34787221 34787362 -113996110 - MIR3 SINE MIR -13 195 50 2002 141 0 3 chr11 34787600 34787906 -113995566 + AluJb SINE Alu 1 305 -7 2285 97 3 0 chr11 34788094 34788384 -113995088 - AluSp SINE Alu -8 305 15 216 0 0 0 chr11 34789443 34789467 -113994005 + (A)n Simple_repeat Simple_repeat 1 24 0 720 252 105 8 chr11 34789704 34790077 -113993395 - L1M4 LINE L1 -2878 3268 2860 1776 141 62 0 chr11 34790086 34790392 -113993080 - L1PA16 LINE L1 -36 6130 5806 1157 248 107 10 chr11 34790394 34790899 -113992573 - L1M4 LINE L1 -3276 2870 2317 238 104 21 21 chr11 34790899 34790947 -113992525 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 758 146 0 24 chr11 34791969 34792092 -113991380 + AluJo SINE Alu 14 133 -179 320 26 0 0 chr11 34792333 34792371 -113991101 - L1P LINE L1 -3572 2574 2537 * 2286 150 54 14 chr11 34792365 34792806 -113990666 + L1MC3 LINE L1 7102 7560 -225 2065 123 0 3 chr11 34792814 34793167 -113990305 - AluSx SINE Alu 0 352 1 1852 224 39 7 chr11 34793171 34793716 -113989756 - L1M4 LINE L1 -784 5362 4801 592 269 186 25 chr11 34793899 34794174 -113989298 + L2 LINE L2 2995 3313 0 508 240 103 14 chr11 34794224 34794370 -113989102 - MIR SINE MIR 0 262 104 553 186 86 14 chr11 34794432 34794572 -113988900 + MLT1A1 LTR MaLR 1 150 -215 2089 130 7 7 chr11 34794578 34794886 -113988586 + AluSx SINE Alu 1 308 -4 1047 181 0 0 chr11 34795016 34795176 -113988296 + AluJo SINE Alu 136 295 -17 202 353 72 24 chr11 34795187 34795394 -113988078 + L2 LINE L2 2857 3073 -199 207 0 0 0 chr11 34795909 34795932 -113987540 + (A)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr11 34796107 34796137 -113987335 + AT_rich Low_complexity Low_complexity 1 30 0 2163 87 7 14 chr11 34796137 34796424 -113987048 - AluSq SINE Alu -28 285 1 2317 100 0 3 chr11 34797487 34797788 -113985684 + AluSx SINE Alu 1 300 -12 839 81 0 0 chr11 34797986 34798097 -113985375 - AluSq/x SINE Alu -201 111 1 1176 255 136 20 chr11 34799030 34799640 -113983832 - L2 LINE L2 -1 3312 2584 1359 148 15 50 chr11 34799870 34800123 -113983349 - MER33 DNA MER1_type -2277 308 67 1919 148 27 0 chr11 34800123 34800420 -113983052 - AluJb SINE Alu -7 305 1 1359 148 15 50 chr11 34800420 34800497 -113982975 - MER33 DNA MER1_type -2518 67 1 598 207 29 0 chr11 34800880 34801020 -113982452 - Charlie1 DNA MER1_type 0 2761 2618 * 1236 235 20 101 chr11 34800988 34801176 -113982296 - Charlie1 DNA MER1_type -2264 497 296 637 157 74 8 chr11 34801176 34801297 -113982175 + FLAM_A SINE Alu 1 129 -4 1236 235 20 101 chr11 34801297 34801644 -113981828 - Charlie1 DNA MER1_type -2465 296 5 23 0 0 0 chr11 34802657 34802680 -113980792 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 175 42 chr11 34803157 34803300 -113980172 + MIR3 SINE MIR 22 183 -25 1887 87 113 7 chr11 34803927 34804202 -113979270 + AluSg1 SINE Alu 6 309 0 205 343 0 0 chr11 34804331 34804398 -113979074 - L2 LINE L2 0 3272 3206 1325 158 77 0 chr11 34804498 34804757 -113978715 + MER46B DNA MER2_type 83 236 0 234 297 99 20 chr11 34804757 34804858 -113978614 + MIR SINE MIR 153 261 -1 1601 144 14 51 chr11 34804865 34805157 -113978315 - AluJb SINE Alu -27 285 5 182 105 26 0 chr11 34805432 34805470 -113978002 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1330 153 5 31 chr11 34805482 34805633 -113977839 - AluJb SINE Alu -28 284 139 2391 112 0 6 chr11 34805633 34805947 -113977525 - AluSx SINE Alu 0 312 1 1330 153 5 31 chr11 34805947 34806017 -113977455 - AluJb SINE Alu -173 139 69 349 280 108 0 chr11 34806479 34806572 -113976900 + L2 LINE L2 3170 3272 0 203 0 0 36 chr11 34806827 34806855 -113976617 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 458 194 0 0 chr11 34806906 34806978 -113976494 + FRAM SINE Alu 74 145 -31 294 355 18 35 chr11 34807110 34807279 -113976193 + L2 LINE L2 2333 2498 -816 201 382 0 10 chr11 34807296 34807398 -113976074 - L2 LINE L2 -818 2496 2396 969 253 128 52 chr11 34807434 34807916 -113975556 - MLT1L LTR MaLR -10 605 73 2333 94 0 0 chr11 34807916 34808213 -113975259 + AluSg SINE Alu 1 297 -13 969 253 128 52 chr11 34808213 34808292 -113975180 - MLT1L LTR MaLR -542 73 1 696 254 53 14 chr11 34808292 34808501 -113974971 - L2 LINE L2 -946 2368 2152 284 328 102 0 chr11 34808501 34808629 -113974843 + MIR SINE MIR 118 258 -4 212 192 77 19 chr11 34809177 34809229 -113974243 + MER5A DNA MER1_type 134 188 -1 1873 126 0 73 chr11 34809319 34809621 -113973851 - AluSx SINE Alu -23 289 10 2167 124 10 0 chr11 34809639 34809946 -113973526 - AluSx SINE Alu -2 310 1 1962 140 3 11 chr11 34810356 34810665 -113972807 - AluSx SINE Alu 0 307 1 1762 154 29 0 chr11 34810704 34810977 -113972495 - AluSx SINE Alu -22 290 10 1728 131 4 15 chr11 34812896 34813156 -113970316 + AluJb SINE Alu 3 259 -53 559 164 14 164 chr11 34813388 34813454 -113970018 - MER58A DNA MER1_type -2198 222 148 1573 110 18 13 chr11 34813454 34813682 -113969790 - MER30 DNA MER1_type -1 229 1 559 164 14 164 chr11 34813682 34813828 -113969644 - MER58A DNA MER1_type -2272 148 42 378 266 80 83 chr11 34813891 34814252 -113969220 + HAL1 LINE L1 930 1289 -1218 2340 101 0 0 chr11 34814327 34814624 -113968848 + AluSx SINE Alu 1 297 -15 261 152 215 38 chr11 34814624 34814703 -113968769 + L1MC5 LINE L1 7823 7915 -46 397 245 220 30 chr11 34814747 34814947 -113968525 - L1ME4a LINE L1 -4 6117 5880 401 151 23 12 chr11 34815190 34815276 -113968196 - LTR67 LTR ERVL -13 544 458 208 304 96 35 chr11 34815714 34815829 -113967643 + MIR SINE MIR 81 202 -60 418 282 153 31 chr11 34816343 34816506 -113966966 - MIR3 SINE MIR -14 194 12 1287 112 0 43 chr11 34816819 34817006 -113966466 + AluSx SINE Alu 1 179 -133 323 241 27 89 chr11 34817358 34817456 -113966016 - L1ME4a LINE L1 -289 5881 5778 2238 156 46 10 chr11 34817456 34817867 -113965605 - MSTB LTR MaLR 0 426 1 323 241 27 89 chr11 34817867 34817992 -113965480 - L1ME4a LINE L1 -392 5778 5672 334 359 19 6 chr11 34818010 34818169 -113965303 - L1ME4a LINE L1 -533 5631 5471 23 0 0 0 chr11 34818186 34818209 -113965263 + AT_rich Low_complexity Low_complexity 1 23 0 1779 139 29 45 chr11 34818218 34818356 -113965116 + AluJb SINE Alu 1 140 -172 2454 75 0 10 chr11 34818356 34818661 -113964811 + AluSp SINE Alu 1 302 -11 1779 139 29 45 chr11 34818661 34818831 -113964641 + AluJb SINE Alu 140 304 -8 456 163 71 0 chr11 34818832 34818930 -113964542 + Charlie4 DNA MER1_type 85 189 -1772 295 218 223 6 chr11 34818952 34819287 -113964185 - L1ME4a LINE L1 -748 5398 5012 1343 182 5 9 chr11 34819304 34819524 -113963948 - AluJo SINE Alu -87 225 7 692 252 115 46 chr11 34819537 34820104 -113963368 - L1ME4a LINE L1 -1137 5009 4404 3555 167 17 16 chr11 34820464 34821172 -113962300 + L1MB7 LINE L1 5456 6164 -20 261 269 224 13 chr11 34871299 34871455 -113912017 + MIR SINE MIR 72 260 -2 2110 68 0 19 chr11 34871864 34872130 -113911342 + AluY SINE Alu 36 296 -15 1456 129 9 0 chr11 34872415 34872632 -113910840 - AluSg/x SINE Alu -7 302 84 187 346 62 15 chr11 34873158 34873288 -113910184 + L2 LINE L2 3125 3260 -12 209 171 0 0 chr11 34873303 34873338 -113910134 + (TG)n Simple_repeat Simple_repeat 2 36 0 1980 132 54 60 chr11 34873339 34873688 -113909784 - MER7A DNA MER2_type 0 346 2 267 31 0 0 chr11 34873689 34873721 -113909751 + (TG)n Simple_repeat Simple_repeat 1 32 0 277 195 122 12 chr11 34873804 34873886 -113909586 + MIR SINE MIR 105 195 -67 695 288 241 22 chr11 34873979 34874382 -113909090 + L2 LINE L2 2819 3309 -4 1442 182 20 50 chr11 34875499 34875796 -113907676 - AluJb SINE Alu -24 288 1 940 254 125 10 chr11 34875900 34876203 -113907269 - MER46C DNA MER2_type 0 338 1 25 65 0 0 chr11 34876730 34876776 -113906696 + AT_rich Low_complexity Low_complexity 1 46 0 2226 105 27 0 chr11 34878083 34878379 -113905093 + AluSx SINE Alu 1 304 -8 2297 93 7 0 chr11 34878835 34879125 -113904347 - AluSg SINE Alu -18 292 1 307 237 153 42 chr11 34879147 34879265 -113904207 - MIR3 SINE MIR -5 203 73 324 0 0 0 chr11 34879320 34879356 -113904116 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2223 99 0 0 chr11 34879471 34879763 -113903709 - AluSx SINE Alu -20 292 1 1194 229 61 107 chr11 34882769 34883179 -113900293 - L1MC5 LINE L1 -36 7925 7498 2130 53 4 19 chr11 34883179 34883443 -113900029 + AluY SINE Alu 23 282 -29 261 0 0 0 chr11 34883446 34883475 -113899997 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2315 79 0 0 chr11 34883484 34883790 -113899682 + AluSc SINE Alu 1 306 0 1194 229 61 107 chr11 34883790 34883989 -113899483 - L1MC5 LINE L1 -473 7488 7330 338 130 111 0 chr11 34884050 34884104 -113899368 + Tigger2 DNA MER2_type 1 60 -2658 2380 113 89 34 chr11 34884112 34884355 -113899117 + Tigger2 DNA MER2_type 2281 2558 -160 1310 182 79 41 chr11 34884355 34884646 -113898826 + AluJo SINE Alu 4 305 -7 2380 113 89 34 chr11 34884646 34884817 -113898655 + Tigger2 DNA MER2_type 2558 2718 0 2421 85 0 3 chr11 34885118 34885425 -113898047 + AluSx SINE Alu 1 306 -6 2364 92 0 0 chr11 34886483 34886788 -113896684 - AluSx SINE Alu -7 305 1 2349 92 0 10 chr11 34887010 34887313 -113896159 - AluSg SINE Alu -10 300 1 2472 65 0 7 chr11 34887575 34887884 -113895588 - AluSc SINE Alu 0 309 3 186 270 79 16 chr11 34889298 34889361 -113894111 - MIR SINE MIR -168 94 28 384 279 23 107 chr11 34889644 34889859 -113893613 + L2 LINE L2 2963 3159 -113 2171 105 3 16 chr11 34890338 34890644 -113892828 + AluSx SINE Alu 1 302 -10 1754 101 4 8 chr11 34890991 34891257 -113892215 - AluY SINE Alu 0 308 44 389 123 0 0 chr11 34891263 34891320 -113892152 + AluS SINE Alu 1 57 -244 2156 111 0 17 chr11 34891524 34891655 -113891817 + AluSq SINE Alu 5 137 -176 2139 118 0 0 chr11 34891655 34891954 -113891518 + AluSg SINE Alu 1 299 0 2156 111 0 17 chr11 34891954 34892118 -113891354 + AluSq SINE Alu 137 296 -17 467 259 130 0 chr11 34892450 34892581 -113890891 - MIR3 SINE MIR -1 207 60 436 285 66 0 chr11 34893751 34893888 -113889584 + MIR SINE MIR 117 262 0 2197 124 7 0 chr11 34893942 34894240 -113889232 + AluJb SINE Alu 1 300 -12 1037 155 23 17 chr11 34894240 34894414 -113889058 + AluJb SINE Alu 134 308 -4 4016 93 27 30 chr11 34894539 34895133 -113888339 - LTR14B LTR ERVK 0 608 17 2004 107 52 17 chr11 34895806 34896096 -113887376 + AluSq SINE Alu 1 300 -13 374 197 150 39 chr11 34896535 34896662 -113886810 - L2 LINE L2 -4 3309 3169 796 164 8 0 chr11 34897051 34897179 -113886293 - FLAM_A SINE Alu -2 131 3 192 318 0 15 chr11 34897644 34897710 -113885762 - MIR SINE MIR -60 148 84 2597 63 0 0 chr11 34897839 34898139 -113885333 + AluSc SINE Alu 1 300 -9 5352 134 52 25 chr11 34898213 34899157 -113884315 - LTR5 LTR ERVK 0 969 1 469 184 58 0 chr11 34899423 34899510 -113883962 + AluJb SINE Alu 208 299 -13 672 211 146 71 chr11 34899511 34899665 -113883807 - L1M4 LINE L1 -945 5201 5060 1868 160 10 0 chr11 34899665 34899959 -113883513 - AluJb SINE Alu -15 297 1 672 211 146 71 chr11 34899959 34900026 -113883446 - L1M4 LINE L1 -1086 5060 4999 2315 73 0 0 chr11 34900026 34900299 -113883173 - AluY SINE Alu -22 289 17 672 211 146 71 chr11 34900299 34900356 -113883116 - L1M4 LINE L1 -1147 4999 4901 688 165 0 0 chr11 34900383 34900486 -113882986 - AluSg/x SINE Alu -18 292 190 679 125 116 0 chr11 34900481 34900593 -113882879 - AluJo/FLAM SINE Alu -186 126 2 * 1212 171 87 21 chr11 34900621 34900908 -113882564 - L1M4 LINE L1 -1300 4846 4541 1163 111 84 0 chr11 34900908 34901098 -113882374 + L1PA13 LINE L1 5955 6160 -3 754 181 47 72 chr11 34901485 34901556 -113881916 + MER5A DNA MER1_type 1 72 -117 1820 163 13 13 chr11 34901556 34901863 -113881609 + AluJb SINE Alu 1 307 -5 754 181 47 72 chr11 34901863 34901984 -113881488 + MER5A DNA MER1_type 72 188 -1 2125 115 7 0 chr11 34901993 34902279 -113881193 - AluSx SINE Alu -11 301 14 1865 143 52 3 chr11 34902677 34902964 -113880508 - AluJo SINE Alu -11 301 1 442 235 33 82 chr11 34903925 34904108 -113879364 - MER104 DNA Tc2 -5 175 2 665 252 141 66 chr11 34904171 34904548 -113878924 - MLT1L LTR MaLR -210 405 1 2169 129 0 0 chr11 34904657 34904959 -113878513 - AluSg SINE Alu -3 307 6 2114 135 0 3 chr11 34904970 34905259 -113878213 - AluSx SINE Alu -24 288 1 771 172 10 98 chr11 34905403 34905606 -113877866 - AluSg/x SINE Alu -4 308 124 2307 117 3 0 chr11 34907036 34907344 -113876128 - AluSx SINE Alu -1 311 3 280 226 97 21 chr11 34907408 34907501 -113875971 - L1ME4a LINE L1 -38 6083 5984 363 274 9 0 chr11 34907535 34907641 -113875831 - L1MC4 LINE L1 -1 8041 7935 728 98 10 0 chr11 34907641 34907743 -113875729 - FLAM_C SINE Alu -38 105 3 320 275 22 36 chr11 34908742 34908880 -113874592 - MIR SINE MIR -21 241 106 600 126 0 29 chr11 34908945 34909048 -113874424 - AluSg/x SINE Alu 0 310 211 1926 161 0 0 chr11 34909821 34910106 -113873366 - AluJb SINE Alu -27 285 1 404 313 63 13 chr11 34910111 34910299 -113873173 - MIR SINE MIR -65 197 1 2032 118 3 3 chr11 34910649 34910937 -113872535 + AluSx SINE Alu 1 288 -24 205 29 29 29 chr11 34910940 34910975 -113872497 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1769 167 55 6 chr11 34910975 34911322 -113872150 - L1MB7 LINE L1 -7 6177 5814 3078 191 24 40 chr11 34911336 34911712 -113871760 - L1MB4 LINE L1 0 6180 5818 1611 159 36 40 chr11 34911712 34912013 -113871459 - AluJo SINE Alu -12 300 1 3078 191 24 40 chr11 34912013 34912312 -113871160 - L1MB4 LINE L1 -362 5818 5516 775 205 6 0 chr11 34912831 34912987 -113870485 + LTR31 LTR ERV1 387 543 -76 205 152 0 0 chr11 34912989 34913022 -113870450 + A-rich Low_complexity Low_complexity 2 34 0 933 187 23 0 chr11 34913634 34913805 -113869667 - FAM SINE Alu 0 175 1 528 226 0 17 chr11 34913822 34913937 -113869535 + MER81 DNA DNA 2 114 0 182 278 206 54 chr11 34913976 34914120 -113869352 - MIR SINE MIR -4 258 137 2241 109 3 0 chr11 34914120 34914413 -113869059 - AluSq SINE Alu -19 294 1 182 278 206 54 chr11 34914413 34914491 -113868981 - MIR SINE MIR -125 137 2 306 314 0 9 chr11 34915126 34915231 -113868241 - L2 LINE L2 -505 2809 2706 825 239 24 10 chr11 34915665 34915874 -113867598 + MER112 DNA MER1_type 12 223 -37 1949 122 35 29 chr11 34916761 34917072 -113866400 - AluSq SINE Alu 0 313 1 368 291 80 20 chr11 34917955 34918106 -113865366 + MIR SINE MIR 90 249 -13 48 105 0 0 chr11 34918147 34918328 -113865144 + AT_rich Low_complexity Low_complexity 1 181 0 341 247 0 13 chr11 34918366 34918443 -113865029 + L1MA7 LINE L1 6187 6262 -29 1793 157 0 42 chr11 34918444 34918757 -113864715 - AluJb SINE Alu -12 300 1 1669 138 8 23 chr11 34918897 34919158 -113864314 + AluJo SINE Alu 54 310 -2 2139 142 3 0 chr11 34919254 34919557 -113863915 + AluSp SINE Alu 2 305 -8 2278 102 7 0 chr11 34919569 34919872 -113863600 + AluSx SINE Alu 1 305 -7 2074 126 3 0 chr11 34919881 34920174 -113863298 + AluSx SINE Alu 1 294 -18 227 170 0 38 chr11 34920661 34920689 -113862783 + (TTCA)n Simple_repeat Simple_repeat 2 29 -23 2202 116 7 0 chr11 34920689 34920992 -113862480 - AluSx SINE Alu -7 305 1 227 170 0 38 chr11 34920992 34921016 -113862456 + (TTCA)n Simple_repeat Simple_repeat 29 52 0 430 312 124 30 chr11 34921053 34921287 -113862185 - L2 LINE L2 -40 3232 2977 213 39 0 0 chr11 34922575 34922601 -113860871 + (T)n Simple_repeat Simple_repeat 1 26 0 2531 79 0 0 chr11 34922781 34923086 -113860386 + AluSx SINE Alu 1 305 -7 1749 159 3 30 chr11 34923495 34923796 -113859676 + AluJo SINE Alu 1 293 -19 21 89 0 0 chr11 34923890 34923946 -113859526 + AT_rich Low_complexity Low_complexity 1 56 0 2333 88 0 3 chr11 34924061 34924356 -113859116 - AluSg SINE Alu -16 294 1 2558 47 0 3 chr11 34925574 34925870 -113857602 - AluY SINE Alu -16 295 1 2336 88 3 3 chr11 34926797 34927093 -113856379 + AluSx SINE Alu 1 296 -16 333 269 213 31 chr11 34927515 34927675 -113855797 + MIR3 SINE MIR 3 191 -17 271 324 81 7 chr11 34927753 34927889 -113855583 + MIR SINE MIR 73 218 -44 210 150 0 0 chr11 34928181 34928221 -113855251 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 1857 177 10 0 chr11 34928665 34928970 -113854502 + AluSx SINE Alu 1 308 -4 970 162 0 45 chr11 34928987 34929166 -113854306 + AluJo SINE Alu 26 196 -116 1968 124 57 10 chr11 34929213 34929511 -113853961 - AluSx SINE Alu 0 312 1 27 0 0 0 chr11 34929574 34929601 -113853871 + AT_rich Low_complexity Low_complexity 1 27 0 2450 138 52 5 chr11 34930322 34930729 -113852743 + MSTA LTR MaLR 1 426 -2 2322 102 3 0 chr11 34930887 34931192 -113852280 - AluSq SINE Alu -7 306 1 2032 116 193 11 chr11 34931214 34931593 -113851879 + MER83 LTR ERV1 1 448 0 1706 143 27 48 chr11 34931641 34931935 -113851537 - AluJb SINE Alu -24 288 1 1997 123 7 14 chr11 34931980 34932273 -113851199 - AluSx SINE Alu -21 291 1 1369 191 0 0 chr11 34932869 34933099 -113850373 + MER46A DNA MER2_type 1 230 -6 2170 135 0 0 chr11 34935296 34935592 -113847880 - AluSq SINE Alu -17 296 1 251 266 75 12 chr11 34936558 34936696 -113846776 - MIR SINE MIR -51 157 28 2328 83 24 0 chr11 34937144 34937434 -113846038 - AluSx SINE Alu -15 297 1 1780 118 51 67 chr11 34937456 34937771 -113845701 - AluJb SINE Alu -1 311 2 367 127 32 16 chr11 34937856 34937919 -113845553 - MER6 DNA MER2_type 0 865 802 207 0 0 0 chr11 34938187 34938210 -113845262 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2385 57 4 0 chr11 34938213 34938493 -113844979 - AluSx SINE Alu -31 281 1 1052 62 0 0 chr11 34939445 34939575 -113843897 - AluY SINE Alu -9 302 173 1897 138 7 7 chr11 34939782 34940073 -113843399 + AluJb SINE Alu 13 303 -9 2508 70 0 0 chr11 34940274 34940573 -113842899 - AluSq SINE Alu -14 299 1 592 269 186 25 chr11 34940632 34940907 -113842565 + L2 LINE L2 2995 3313 0 508 240 103 14 chr11 34940957 34941103 -113842369 - MIR SINE MIR 0 262 104 553 186 86 14 chr11 34941165 34941305 -113842167 + MLT1A1 LTR MaLR 1 150 -215 2081 130 7 7 chr11 34941311 34941618 -113841854 + AluSx SINE Alu 1 307 -5 1123 150 0 0 chr11 34941748 34941908 -113841564 + FRAM SINE Alu 1 159 -17 572 233 20 33 chr11 34942294 34942444 -113841028 + MIR SINE MIR 7 154 -108 1805 158 60 0 chr11 34942449 34942785 -113840687 + MER46B DNA MER2_type 6 236 0 234 297 99 20 chr11 34942785 34942886 -113840586 + MIR SINE MIR 153 261 -1 1601 144 14 51 chr11 34942893 34943185 -113840287 - AluJb SINE Alu -27 285 5 182 105 26 0 chr11 34943460 34943498 -113839974 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1330 153 5 31 chr11 34943510 34943661 -113839811 - AluJb SINE Alu -28 284 139 2391 112 0 6 chr11 34943661 34943975 -113839497 - AluSx SINE Alu 0 312 1 1330 153 5 31 chr11 34943975 34944045 -113839427 - AluJb SINE Alu -173 139 69 349 280 108 0 chr11 34944507 34944600 -113838872 + L2 LINE L2 3170 3272 0 203 0 0 36 chr11 34944855 34944883 -113838589 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 458 194 0 0 chr11 34944934 34945006 -113838466 + FRAM SINE Alu 74 145 -31 294 355 18 35 chr11 34945138 34945307 -113838165 + L2 LINE L2 2333 2498 -816 201 382 0 10 chr11 34945324 34945426 -113838046 - L2 LINE L2 -818 2496 2396 969 253 128 52 chr11 34945462 34945944 -113837528 - MLT1L LTR MaLR -10 605 73 2333 94 0 0 chr11 34945944 34946241 -113837231 + AluSg SINE Alu 1 297 -13 969 253 128 52 chr11 34946241 34946320 -113837152 - MLT1L LTR MaLR -542 73 1 696 254 53 14 chr11 34946320 34946529 -113836943 - L2 LINE L2 -946 2368 2152 284 328 102 0 chr11 34946529 34946657 -113836815 + MIR SINE MIR 118 258 -4 212 192 77 19 chr11 34947205 34947257 -113836215 + MER5A DNA MER1_type 134 188 -1 1873 126 0 73 chr11 34947347 34947649 -113835823 - AluSx SINE Alu -23 289 10 2167 124 10 0 chr11 34947667 34947974 -113835498 - AluSx SINE Alu -2 310 1 1962 140 3 11 chr11 34948384 34948693 -113834779 - AluSx SINE Alu 0 307 1 1762 154 29 0 chr11 34948732 34949005 -113834467 - AluSx SINE Alu -22 290 10 2011 122 6 38 chr11 34950924 34951244 -113832228 + AluJb SINE Alu 3 312 0 193 278 0 19 chr11 34951385 34951439 -113832033 - MER5B DNA MER1_type -82 96 44 3283 80 2 0 chr11 34951473 34951909 -113831563 - LTR3b LTR ERVK 0 437 1 559 164 14 164 chr11 34952001 34952067 -113831405 - MER58A DNA MER1_type -2198 222 148 1573 110 18 13 chr11 34952067 34952295 -113831177 - MER30 DNA MER1_type -1 229 1 559 164 14 164 chr11 34952295 34952441 -113831031 - MER58A DNA MER1_type -2272 148 42 378 266 80 83 chr11 34952504 34952865 -113830607 + HAL1 LINE L1 930 1289 -1218 2340 101 0 0 chr11 34952940 34953237 -113830235 + AluSx SINE Alu 1 297 -15 261 152 215 38 chr11 34953237 34953316 -113830156 + L1MC5 LINE L1 7823 7915 -46 419 240 220 30 chr11 34953360 34953560 -113829912 - L1ME4a LINE L1 -4 6117 5880 401 151 23 12 chr11 34953803 34953889 -113829583 - LTR67 LTR ERVL -13 544 458 208 304 96 35 chr11 34954327 34954442 -113829030 + MIR SINE MIR 81 202 -60 418 282 153 31 chr11 34954956 34955119 -113828353 - MIR3 SINE MIR -14 194 12 1287 112 0 43 chr11 34955432 34955619 -113827853 + AluSx SINE Alu 1 179 -133 323 241 27 89 chr11 34955969 34956067 -113827405 - L1ME4a LINE L1 -289 5881 5778 2238 156 46 10 chr11 34956067 34956478 -113826994 - MSTB LTR MaLR 0 426 1 323 241 27 89 chr11 34956478 34956603 -113826869 - L1ME4a LINE L1 -392 5778 5672 334 359 19 6 chr11 34956621 34956780 -113826692 - L1ME4a LINE L1 -533 5631 5471 23 0 0 0 chr11 34956797 34956820 -113826652 + AT_rich Low_complexity Low_complexity 1 23 0 1779 139 29 45 chr11 34956829 34956967 -113826505 + AluJb SINE Alu 1 140 -172 2430 82 0 10 chr11 34956967 34957272 -113826200 + AluSp SINE Alu 1 302 -11 1779 139 29 45 chr11 34957272 34957442 -113826030 + AluJb SINE Alu 140 304 -8 478 153 71 0 chr11 34957443 34957541 -113825931 + Charlie4 DNA MER1_type 85 189 -1772 295 218 223 6 chr11 34957563 34957898 -113825574 - L1ME4a LINE L1 -748 5398 5012 1326 182 5 9 chr11 34957915 34958135 -113825337 - AluJo SINE Alu -87 225 7 692 252 115 46 chr11 34958148 34958715 -113824757 - L1ME4a LINE L1 -1137 5009 4404 3555 167 17 16 chr11 34959075 34959783 -113823689 + L1MB7 LINE L1 5456 6164 -20 1050 183 0 6 chr11 34959915 34960090 -113823382 - FRAM SINE Alu -9 167 1 215 324 14 0 chr11 34960428 34960502 -113822970 + L2 LINE L2 2897 2971 -301 * 909 305 78 22 chr11 34960488 34960888 -113822584 - L2 LINE L2 -718 2596 2175 2375 109 0 3 chr11 34961355 34961668 -113821804 - AluSq SINE Alu -1 312 1 537 295 65 5 chr11 34961828 34962028 -113821444 - L1ME LINE L1 -406 5715 5504 559 280 59 0 chr11 34962435 34962621 -113820851 - MER117 DNA MER1_type 0 197 1 936 256 26 0 chr11 34962844 34963078 -113820394 + MIR SINE MIR 13 252 -10 3238 137 12 30 chr11 34963083 34963688 -113819784 + L1MB7 LINE L1 5587 6180 -4 2011 142 7 0 chr11 34964051 34964333 -113819139 - AluJb SINE Alu -17 295 12 21 36 0 0 chr11 34964587 34964615 -113818857 + AT_rich Low_complexity Low_complexity 1 28 0 1790 141 14 24 chr11 34964745 34965035 -113818437 - AluJo SINE Alu -21 291 5 350 258 141 39 chr11 34965246 34965355 -113818117 - L1ME LINE L1 -545 5576 5480 189 0 0 0 chr11 34965355 34965376 -113818096 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 350 258 141 39 chr11 34965376 34965823 -113817649 - L1ME LINE L1 -641 5480 4966 367 171 0 24 chr11 34967169 34967251 -113816221 + MER116 DNA Mariner 1 80 0 883 182 0 0 chr11 34967569 34967712 -113815760 + FLAM_C SINE Alu 1 143 0 2319 102 0 16 chr11 34967775 34968111 -113815361 + AluSx SINE Alu 1 312 0 753 164 0 0 chr11 34968332 34968448 -113815024 - FRAM SINE Alu -21 155 40 2098 139 0 0 chr11 34968458 34968778 -113814694 - AluSx SINE Alu 0 320 1 21 36 0 0 chr11 34968924 34968952 -113814520 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 35 0 chr11 34969006 34969147 -113814325 - MIR3 SINE MIR -13 195 50 1992 144 0 3 chr11 34969385 34969691 -113813781 + AluJb SINE Alu 1 305 -7 2302 96 3 0 chr11 34969879 34970171 -113813301 - AluSp SINE Alu -6 307 15 192 40 0 0 chr11 34971230 34971255 -113812217 + (A)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr11 34971430 34971460 -113812012 + AT_rich Low_complexity Low_complexity 1 30 0 2173 84 7 14 chr11 34971460 34971747 -113811725 - AluSq SINE Alu -28 285 1 2313 103 0 3 chr11 34972810 34973112 -113810360 + AluSx SINE Alu 1 301 -11 562 221 29 0 chr11 34973280 34973420 -113810052 - Charlie1 DNA MER1_type 0 2761 2618 * 1261 231 20 101 chr11 34973388 34973576 -113809896 - Charlie1 DNA MER1_type -2264 497 296 637 157 74 8 chr11 34973576 34973697 -113809775 + FLAM_A SINE Alu 1 129 -4 1261 231 20 101 chr11 34973697 34974044 -113809428 - Charlie1 DNA MER1_type -2465 296 5 23 0 0 0 chr11 34975057 34975080 -113808392 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 175 42 chr11 34975557 34975700 -113807772 + MIR3 SINE MIR 22 183 -25 1872 91 113 7 chr11 34976327 34976602 -113806870 + AluSg1 SINE Alu 6 309 0 364 320 40 27 chr11 34976731 34976881 -113806591 - L2 LINE L2 0 3272 3121 2367 78 3 10 chr11 34977060 34977366 -113806106 - AluSx SINE Alu -8 304 1 1176 253 162 18 chr11 34978299 34978909 -113804563 - L2 LINE L2 -1 3312 2584 1359 148 15 50 chr11 34979139 34979392 -113804080 - MER33 DNA MER1_type -2277 308 67 1919 148 27 0 chr11 34979392 34979689 -113803783 - AluJb SINE Alu -7 305 1 1359 148 15 50 chr11 34979689 34979766 -113803706 - MER33 DNA MER1_type -2518 67 1 2068 131 0 0 chr11 34980405 34980715 -113802757 + AluSg SINE Alu 1 310 0 363 356 55 14 chr11 34980715 34980861 -113802611 - MIR3 SINE MIR -27 181 30 21 57 0 0 chr11 34980975 34981010 -113802462 + AT_rich Low_complexity Low_complexity 1 35 0 281 259 0 0 chr11 34981851 34981909 -113801563 - L2 LINE L2 -14 3258 3201 306 0 0 0 chr11 34982091 34982125 -113801347 + (ATG)n Simple_repeat Simple_repeat 1 34 0 369 0 0 0 chr11 34982125 34982166 -113801306 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1844 114 40 4 chr11 34982169 34982441 -113801031 - AluSx SINE Alu -30 282 1 1946 142 10 0 chr11 34982762 34983051 -113800421 + AluJb SINE Alu 5 296 -16 51 31 0 0 chr11 34984166 34984231 -113799241 + AT_rich Low_complexity Low_complexity 1 65 0 208 133 26 108 chr11 34984231 34984426 -113799046 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 213 174 14 43 chr11 34984429 34984498 -113798974 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1398 178 21 4 chr11 34984909 34985190 -113798282 - L1MD3 LINE L1 0 7995 7710 600 196 39 98 chr11 34985927 34986101 -113797371 + L1MC4 LINE L1 7530 7686 -356 1531 171 0 40 chr11 34986101 34986376 -113797096 + AluJb SINE Alu 2 265 -47 600 196 39 98 chr11 34986376 34986456 -113797016 + L1MC4 LINE L1 7686 7769 -273 326 314 58 58 chr11 34986752 34986924 -113796548 + MIR3 SINE MIR 6 177 -31 2227 98 3 0 chr11 34987022 34987308 -113796164 + AluSp SINE Alu 1 287 -26 22 0 0 0 chr11 34987398 34987420 -113796052 + AT_rich Low_complexity Low_complexity 1 22 0 2031 119 32 0 chr11 34987449 34987726 -113795746 - AluSx SINE Alu -26 286 1 314 270 44 13 chr11 34987858 34988017 -113795455 - L1ME4a LINE L1 -4 6117 5954 455 60 134 0 chr11 34988023 34988090 -113795382 - MADE1 DNA Mariner -4 76 1 1260 174 17 49 chr11 34988206 34988494 -113794978 - L1MB2 LINE L1 -12 6159 5881 647 245 0 13 chr11 34988691 34988842 -113794630 + MIR SINE MIR 5 153 -109 250 282 70 14 chr11 34988853 34988924 -113794548 + MER91C DNA MER1_type 33 107 -33 343 287 0 43 chr11 34988935 34989050 -113794422 + MIR SINE MIR 145 254 -8 2262 99 0 0 chr11 34989051 34989384 -113794088 - AluSx SINE Alu 0 333 1 207 0 0 0 chr11 34989681 34989704 -113793768 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 2302 64 20 24 chr11 34989927 34990224 -113793248 + AluY SINE Alu 1 296 -15 1699 166 7 14 chr11 34990458 34990741 -113792731 + AluJb SINE Alu 1 313 0 209 0 62 0 chr11 34990741 34990773 -113792699 + (TAA)n Simple_repeat Simple_repeat 1 180 0 800 158 0 0 chr11 34990773 34990893 -113792579 - FLAM_C SINE Alu -23 120 1 336 342 0 0 chr11 34991063 34991142 -113792330 - L2 LINE L2 -45 3227 3149 2411 90 0 0 chr11 34991301 34991602 -113791870 + AluSc SINE Alu 1 301 -8 476 62 0 0 chr11 34991719 34991784 -113791688 - AluSp/q SINE Alu -9 304 240 3809 151 60 88 chr11 34991855 34992007 -113791465 + L1MB4 LINE L1 5290 5445 -735 260 200 0 0 chr11 34992007 34992047 -113791425 + AluYb8 SINE Alu 135 174 -134 3809 151 60 88 chr11 34992047 34992588 -113790884 + L1MB4 LINE L1 5445 5995 -185 1523 182 12 102 chr11 34992588 34992989 -113790483 - MLT1A1 LTR MaLR 0 365 1 3809 151 60 88 chr11 34992989 34993158 -113790314 + L1MB4 LINE L1 5995 6167 -13 259 130 37 0 chr11 34993166 34993220 -113790252 + (TA)n Simple_repeat Simple_repeat 1 56 0 2220 120 0 0 chr11 34993273 34993572 -113789900 + AluSx SINE Alu 1 299 -13 1739 187 10 0 chr11 34993664 34993963 -113789509 + AluJb SINE Alu 1 302 -10 2458 78 0 3 chr11 34993966 34994274 -113789198 + AluSg SINE Alu 1 307 -3 2111 118 0 10 chr11 34995371 34995680 -113787792 + AluSq SINE Alu 1 306 0 21 36 0 0 chr11 34995896 34995924 -113787548 + AT_rich Low_complexity Low_complexity 1 28 0 488 224 8 15 chr11 34996350 34996484 -113786988 - L1MA4 LINE L1 0 6300 6168 435 242 104 74 chr11 34997178 34997350 -113786122 - MIR SINE MIR -18 244 62 2327 68 3 53 chr11 34997350 34997671 -113785801 - AluY SINE Alu -6 305 1 435 242 104 74 chr11 34997671 34997729 -113785743 - MIR SINE MIR -200 62 7 2028 111 76 0 chr11 34998153 34998517 -113784955 + AluSg SINE Alu 1 386 0 2301 95 3 10 chr11 34998857 34999162 -113784310 + AluSx SINE Alu 1 303 -9 282 257 19 9 chr11 35000634 35000739 -113782733 + (TA)n Simple_repeat Simple_repeat 2 107 0 2003 139 3 7 chr11 35001415 35001709 -113781763 - AluJb SINE Alu -13 299 7 2180 111 3 0 chr11 35001736 35002034 -113781438 - AluSx SINE Alu -13 299 1 21 57 0 0 chr11 35002750 35002785 -113780687 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 35002913 35002934 -113780538 + AT_rich Low_complexity Low_complexity 1 21 0 3508 135 15 13 chr11 35003186 35003827 -113779645 + L1MC/D LINE L1 5159 5800 -533 752 163 0 68 chr11 35003843 35003990 -113779482 - FRAM SINE Alu -20 156 20 382 167 0 0 chr11 35003990 35004056 -113779416 - L1MA7 LINE L1 -336 5955 5890 1491 247 77 68 chr11 35004082 35004668 -113778804 - MLT1E LTR MaLR 0 593 3 2224 131 0 0 chr11 35004756 35005062 -113778410 + AluSx SINE Alu 1 306 -6 1028 264 60 46 chr11 35005333 35005584 -113777888 - HAL1 LINE L1 -851 1656 1410 1362 191 103 15 chr11 35005584 35005856 -113777616 + AluJb SINE Alu 3 298 -14 1762 149 3 63 chr11 35005857 35006173 -113777299 + AluJb SINE Alu 1 297 -15 1028 264 60 46 chr11 35006173 35006400 -113777072 - HAL1 LINE L1 -1096 1411 1169 1178 210 52 38 chr11 35006408 35006751 -113776721 - MER87 LTR ERV1 0 541 194 378 224 48 54 chr11 35007024 35007171 -113776301 - MER87-int LTR ERV1 -617 7503 7358 1012 130 0 0 chr11 35007449 35007587 -113775885 - MER49 LTR ERV1 -171 752 615 * 1420 141 83 40 chr11 35007571 35007847 -113775625 - MER49 LTR ERV1 -633 290 3 1788 147 14 5 chr11 35007857 35008154 -113775318 - MER49-int LTR ERV1 -9 7093 6447 1133 185 11 63 chr11 35008234 35008317 -113775155 - MER87-int LTR ERV1 -2237 4026 3940 1855 156 7 16 chr11 35008317 35008624 -113774848 - AluJb SINE Alu -8 304 1 1133 185 11 63 chr11 35008624 35008691 -113774781 - MER87-int LTR ERV1 -2323 3940 3871 2185 120 20 0 chr11 35008691 35008992 -113774480 - AluSx SINE Alu -5 307 1 1133 185 11 63 chr11 35008992 35009181 -113774291 - MER87-int LTR ERV1 -2392 3871 2469 1855 186 66 73 chr11 35009219 35009562 -113773910 - MER87-int LTR ERV1 -2862 3736 3392 2398 87 0 3 chr11 35009562 35009861 -113773611 + AluSq SINE Alu 1 298 -15 1855 186 66 73 chr11 35009861 35010176 -113773296 - MER87-int LTR ERV1 -3206 3392 3081 1755 60 0 5 chr11 35010176 35010392 -113773080 - AluY SINE Alu -17 294 80 2161 113 0 7 chr11 35010411 35010702 -113772770 + AluSx SINE Alu 11 299 -13 11506 169 21 23 chr11 35010702 35012719 -113770753 + L1PA14 LINE L1 3294 5303 -858 2426 101 0 0 chr11 35012719 35013025 -113770447 + AluSg SINE Alu 1 306 -4 11506 169 21 23 chr11 35013025 35013871 -113769601 + L1PA14 LINE L1 5303 6149 -12 227 30 0 30 chr11 35013882 35013915 -113769557 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2345 97 0 0 chr11 35014038 35014338 -113769134 - AluSq SINE Alu -13 300 1 27 0 0 26 chr11 35014346 35014366 -113769106 + AT_rich Low_complexity Low_complexity 1 21 -16 2365 103 0 0 chr11 35014366 35014668 -113768804 + AluSg SINE Alu 1 302 -8 27 0 0 26 chr11 35014668 35014685 -113768787 + AT_rich Low_complexity Low_complexity 21 37 0 2422 84 0 0 chr11 35014685 35015002 -113768470 + AluSx SINE Alu 1 317 0 1679 248 34 19 chr11 35015099 35015515 -113767957 - MER87-int LTR ERV1 -1364 422 1 371 263 51 29 chr11 35015516 35015653 -113767819 - MER87 LTR ERV1 0 541 402 2045 109 3 33 chr11 35015675 35015977 -113767495 - AluSx SINE Alu -19 293 1 1832 243 100 53 chr11 35015978 35016452 -113767020 - L1M4 LINE L1 -1081 5065 4615 2097 132 0 0 chr11 35016452 35016761 -113766711 - AluSx SINE Alu 0 309 1 1832 243 100 53 chr11 35016761 35016938 -113766534 - L1M4 LINE L1 -1531 4615 4448 2538 183 34 28 chr11 35016938 35017407 -113766065 + L1MB7 LINE L1 5628 6102 -82 2174 109 0 7 chr11 35017407 35017700 -113765772 + AluSg SINE Alu 1 291 -19 2538 183 34 28 chr11 35017700 35017765 -113765707 + L1MB7 LINE L1 6102 6165 -19 1832 243 100 53 chr11 35017765 35017871 -113765601 - L1M4 LINE L1 -1698 4448 4270 1545 213 167 0 chr11 35017871 35018200 -113765272 + MSTD LTR MaLR 1 384 -12 3759 223 88 47 chr11 35018213 35019311 -113764161 + MSTD-int LTR MaLR 2 1144 -591 990 167 63 45 chr11 35019308 35019453 -113764019 + MSTD-int LTR MaLR 1510 1662 -73 * 2634 50 0 3 chr11 35019453 35019756 -113763716 + AluY SINE Alu 1 302 -9 990 167 63 45 chr11 35019756 35019832 -113763640 + MSTD-int LTR MaLR 1662 1735 0 2051 188 10 42 chr11 35019832 35020241 -113763231 + MSTD LTR MaLR 1 396 0 530 226 16 0 chr11 35020279 35020403 -113763069 - L1M4 LINE L1 -1924 4222 4097 346 189 162 18 chr11 35020400 35020511 -113762961 + L1MC4 LINE L1 7914 8040 -2 * 984 211 54 5 chr11 35020536 35020759 -113762713 - MIR SINE MIR -28 234 1 1695 168 3 44 chr11 35021146 35021467 -113762005 - AluJb SINE Alu 0 309 1 2448 89 3 0 chr11 35021533 35021836 -113761636 - AluSg SINE Alu -6 304 1 553 251 80 84 chr11 35021904 35022007 -113761465 + L1ME LINE L1 5513 5615 -506 624 197 8 0 chr11 35022007 35022129 -113761343 + FLAM_C SINE Alu 3 125 -8 553 251 80 84 chr11 35022129 35022312 -113761160 + L1ME LINE L1 5615 5798 -323 1475 83 0 0 chr11 35022419 35022599 -113760873 - AluSp SINE Alu 0 313 134 2009 73 94 14 chr11 35022599 35022874 -113760598 - AluSx SINE Alu -15 297 1 1950 157 3 0 chr11 35023119 35023419 -113760053 + AluJo SINE Alu 3 303 -9 496 299 83 69 chr11 35023677 35023965 -113759507 - LTR16C LTR ERVL -13 478 187 932 219 136 12 chr11 35024042 35024293 -113759179 + AluJo SINE Alu 1 282 -30 195 129 0 0 chr11 35024294 35024325 -113759147 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2224 114 10 3 chr11 35024327 35024633 -113758839 - AluSx SINE Alu 0 312 5 2247 120 0 7 chr11 35024647 35024956 -113758516 - AluSx SINE Alu -3 309 3 2277 96 3 3 chr11 35024986 35025278 -113758194 + AluSc SINE Alu 1 292 -17 207 0 0 0 chr11 35025288 35025311 -113758161 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1586 155 64 34 chr11 35025311 35025607 -113757865 + AluJo SINE Alu 1 305 -7 1730 168 3 22 chr11 35025607 35025923 -113757549 + AluJo SINE Alu 1 310 -2 1877 112 176 32 chr11 35026511 35026580 -113756892 - MSTA LTR MaLR 0 428 370 2390 92 0 0 chr11 35026580 35026872 -113756600 + AluSg SINE Alu 1 292 -18 1877 112 176 32 chr11 35026872 35027176 -113756296 - MSTA LTR MaLR -58 370 1 1597 109 9 0 chr11 35027205 35027416 -113756056 + AluSg/x SINE Alu 84 296 -14 278 49 0 24 chr11 35027769 35027810 -113755662 + (TG)n Simple_repeat Simple_repeat 2 41 0 364 138 0 0 chr11 35028000 35028058 -113755414 + L1MC4 LINE L1 6974 7031 -1011 2744 209 97 4 chr11 35028062 35028607 -113754865 - MER77 LTR ERV1 -3 602 7 264 170 0 0 chr11 35028608 35028661 -113754811 + L1MC4 LINE L1 7027 7079 -963 2627 129 12 15 chr11 35028665 35028887 -113754585 + MER57A LTR ERV1 1 223 -180 2083 142 134 8 chr11 35028887 35029267 -113754205 - MSTA LTR MaLR 0 428 1 2627 129 12 15 chr11 35029267 35029448 -113754024 + MER57A LTR ERV1 223 403 0 303 195 61 24 chr11 35029448 35029530 -113753942 + L1MC4 LINE L1 7092 7176 -866 730 188 45 8 chr11 35029548 35029681 -113753791 + MLT1C LTR MaLR 327 464 -3 * 3967 145 33 34 chr11 35029680 35030431 -113753041 + LTR1B LTR ERV1 1 772 -13 474 206 41 41 chr11 35030452 35030490 -113752982 + L1MC4a LINE L1 7141 7178 -630 2331 92 3 0 chr11 35030490 35030785 -113752687 - AluSq SINE Alu -17 296 1 474 206 41 41 chr11 35030785 35030892 -113752580 + L1MC4a LINE L1 7177 7286 -522 1715 164 20 0 chr11 35030947 35031246 -113752226 - AluJb SINE Alu -7 305 1 392 280 63 26 chr11 35031253 35031442 -113752030 + MIR SINE MIR 67 262 0 768 200 0 14 chr11 35031918 35032063 -113751409 - FRAM SINE Alu -8 168 26 3080 130 148 96 chr11 35032063 35033308 -113750164 - pTR5 LTR ERV1 -1 1522 6 258 139 51 0 chr11 35033308 35033353 -113750119 - AluSc SINE Alu -135 164 125 184 303 121 10 chr11 35033691 35033790 -113749682 + MIR3 SINE MIR 48 157 -51 353 401 32 6 chr11 35033936 35034093 -113749379 + L2 LINE L2 3112 3272 0 2370 82 0 3 chr11 35034122 35034415 -113749057 + AluY SINE Alu 1 292 -19 671 132 0 9 chr11 35034594 35034700 -113748772 + FLAM_C SINE Alu 29 133 -10 2254 77 10 7 chr11 35034848 35035145 -113748327 + AluSx SINE Alu 5 302 -10 497 60 0 0 chr11 35035327 35035394 -113748078 + L1MA7 LINE L1 6222 6288 -3 213 39 0 0 chr11 35037427 35037453 -113746019 + (CCG)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr11 35037502 35037523 -113745949 + GC_rich Low_complexity Low_complexity 1 21 0 189 180 0 0 chr11 35037593 35037643 -113745829 + C-rich Low_complexity Low_complexity 3 52 0 232 133 33 0 chr11 35037744 35037804 -113745668 + (CCG)n Simple_repeat Simple_repeat 3 64 0 237 139 0 0 chr11 35037858 35037901 -113745571 + (CAG)n Simple_repeat Simple_repeat 1 43 0 1641 116 0 107 chr11 35040930 35041272 -113742200 - AluSp SINE Alu 0 308 1 685 311 5 19 chr11 35041713 35041919 -113741553 - MIR SINE MIR -58 204 2 909 316 131 33 chr11 35042025 35042744 -113740728 + L2 LINE L2 1968 2756 -558 1818 144 0 18 chr11 35042782 35043066 -113740406 + AluJb SINE Alu 1 279 -33 432 0 0 0 chr11 35043066 35043114 -113740358 + (CA)n Simple_repeat Simple_repeat 1 48 0 1596 157 104 7 chr11 35043156 35043436 -113740036 - AluJo SINE Alu 0 312 6 185 184 82 20 chr11 35044056 35044105 -113739367 - L2 LINE L2 -1 3271 3220 1602 280 153 48 chr11 35044312 35044863 -113738609 + L2 LINE L2 2092 2584 -729 2127 130 10 0 chr11 35044863 35045155 -113738317 + AluSx SINE Alu 1 295 -17 1602 280 153 48 chr11 35045155 35045655 -113737817 + L2 LINE L2 2584 3277 -36 760 253 129 5 chr11 35045633 35045835 -113737637 + MIR SINE MIR 7 233 -29 * 204 299 75 0 chr11 35045855 35045922 -113737550 + L2 LINE L2 3241 3312 -1 349 219 31 23 chr11 35046103 35046219 -113737253 - MLT1H LTR MaLR -308 241 97 1918 144 7 3 chr11 35046385 35046684 -113736788 + AluJb SINE Alu 1 300 -12 231 229 0 42 chr11 35046686 35046734 -113736738 - L2 LINE L2 -85 3228 3183 259 215 13 63 chr11 35046766 35046845 -113736627 - L2 LINE L2 -335 2978 2904 981 174 6 0 chr11 35046878 35047045 -113736427 - MER5A DNA MER1_type -21 168 1 270 324 144 0 chr11 35047062 35047201 -113736271 + L2 LINE L2 2990 3148 -165 1017 249 21 4 chr11 35047335 35047572 -113735900 - MIR SINE MIR -14 248 8 343 272 134 38 chr11 35047855 35048116 -113735356 - L2 LINE L2 -27 3286 3001 1923 119 11 21 chr11 35048177 35048495 -113734977 - AluSx SINE Alu 0 315 1 2202 113 3 16 chr11 35048763 35049073 -113734399 - AluSg SINE Alu -4 306 1 180 0 0 0 chr11 35049185 35049205 -113734267 + (T)n Simple_repeat Simple_repeat 1 20 0 537 276 235 22 chr11 35049238 35049596 -113733876 + L2 LINE L2 2880 3313 0 1546 138 40 92 chr11 35050688 35050724 -113732748 - AluJo SINE Alu -2 310 274 2161 103 3 3 chr11 35050724 35051006 -113732466 + AluSq SINE Alu 1 282 -31 1546 138 40 92 chr11 35051006 35051296 -113732176 - AluJo SINE Alu -38 274 1 464 228 46 63 chr11 35051315 35051552 -113731920 - L1MC5 LINE L1 -50 7911 7679 1789 151 10 26 chr11 35052399 35052710 -113730762 + AluJo SINE Alu 1 306 -6 1298 160 89 44 chr11 35053193 35053461 -113730011 - L1M4 LINE L1 -370 5814 5526 2071 141 3 0 chr11 35053461 35053758 -113729714 + AluSx SINE Alu 1 298 -14 1298 160 89 44 chr11 35053758 35053827 -113729645 - L1M4 LINE L1 -658 5526 5462 2223 110 0 7 chr11 35054026 35054325 -113729147 - AluSq SINE Alu -16 297 1 436 272 215 38 chr11 35054514 35055033 -113728439 + L2 LINE L2 2702 3313 0 1196 111 0 32 chr11 35055825 35056014 -113727458 + L1PA8A LINE L1 5949 6131 0 1700 161 60 35 chr11 35056072 35056438 -113727034 + THE1C LTR MaLR 1 375 0 349 323 51 28 chr11 35056609 35056826 -113726646 + L2 LINE L2 2136 2357 -957 208 333 34 51 chr11 35057088 35057205 -113726267 + MER5B DNA MER1_type 63 177 -1 1723 181 0 14 chr11 35057210 35057502 -113725970 + AluJo SINE Alu 1 288 -24 197 359 20 56 chr11 35057683 35057763 -113725709 + L2 LINE L2 2927 3008 -264 2514 73 0 10 chr11 35057763 35058076 -113725396 - AluY SINE Alu -1 310 1 197 359 20 56 chr11 35058076 35058190 -113725282 + L2 LINE L2 3008 3114 -158 497 255 39 97 chr11 35058238 35058497 -113724975 - MIR SINE MIR 0 262 19 1697 157 51 3 chr11 35059497 35059791 -113723681 - AluJo SINE Alu -4 308 1 24 0 0 0 chr11 35059808 35059832 -113723640 + AT_rich Low_complexity Low_complexity 1 24 0 2158 78 60 0 chr11 35060500 35060784 -113722688 - AluSp SINE Alu -12 301 1 2561 162 49 38 chr11 35060798 35061036 -113722436 - L1MB7 LINE L1 -16 6168 5934 1786 171 58 0 chr11 35061036 35061363 -113722109 - MER7A DNA MER2_type -1 345 2 2366 73 0 26 chr11 35061366 35061669 -113721803 - AluSx SINE Alu -17 295 1 2561 162 49 38 chr11 35061669 35062000 -113721472 - L1MB7 LINE L1 -251 5933 5589 2309 109 13 0 chr11 35062126 35062429 -113721043 + AluSx SINE Alu 1 307 -5 222 309 0 29 chr11 35062630 35062698 -113720774 + L2 LINE L2 3193 3258 -14 787 265 115 30 chr11 35062757 35063306 -113720166 - L2 LINE L2 -15 3298 2627 944 145 78 0 chr11 35063472 35063651 -113719821 - L1MC2 LINE L1 -15 6329 6137 745 179 174 30 chr11 35063744 35063945 -113719527 - AluJo SINE Alu -18 294 65 3943 151 49 36 chr11 35063955 35064777 -113718695 - L1MC3 LINE L1 -317 7468 6637 4221 174 45 13 chr11 35064908 35066115 -113717357 + L1MB7 LINE L1 4940 6184 0 2547 204 113 22 chr11 35066110 35067011 -113716461 + L1ME1 LINE L1 4375 5357 -789 * 2023 198 105 54 chr11 35067028 35067064 -113716408 + L1ME1 LINE L1 5434 5467 -699 2316 116 0 0 chr11 35067064 35067367 -113716105 - AluSx SINE Alu -9 303 1 2023 198 105 54 chr11 35067367 35067974 -113715498 + L1ME1 LINE L1 5467 6042 -124 2241 98 0 17 chr11 35067974 35068269 -113715203 + AluSx SINE Alu 1 290 -22 2211 83 3 14 chr11 35068269 35068558 -113714914 + AluSc SINE Alu 1 286 -23 2023 198 105 54 chr11 35068558 35068598 -113714874 + L1ME1 LINE L1 6041 6154 -12 979 216 28 85 chr11 35068616 35068862 -113714610 + L1ME LINE L1 4938 5197 -965 1743 173 26 16 chr11 35068862 35069168 -113714304 + AluJb SINE Alu 1 309 -3 979 216 28 85 chr11 35069168 35069318 -113714154 + L1ME LINE L1 5197 5354 -808 3095 140 36 4 chr11 35069318 35069841 -113713631 - L1PA16 LINE L1 -3 6163 5624 979 216 28 85 chr11 35069841 35070073 -113713399 + L1ME LINE L1 5354 5539 -623 2021 140 0 3 chr11 35070075 35070400 -113713072 - AluSx SINE Alu 0 324 1 368 221 53 21 chr11 35070423 35070518 -113712954 + L1MC4a LINE L1 7270 7367 -441 943 142 28 0 chr11 35070519 35070660 -113712812 + FRAM SINE Alu 1 145 -31 226 250 16 0 chr11 35070665 35070729 -113712743 + L1MC4 LINE L1 7508 7572 -470 430 243 133 39 chr11 35070844 35071153 -113712319 + L1MC4 LINE L1 7705 8042 0 234 418 37 11 chr11 35071285 35071474 -113711998 - MIR3 SINE MIR -12 196 3 2210 104 0 3 chr11 35071980 35072279 -113711193 - AluSg SINE Alu -12 298 1 27 0 0 0 chr11 35072302 35072329 -113711143 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr11 35072469 35072504 -113710968 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 35073459 35073480 -113709992 + AT_rich Low_complexity Low_complexity 1 21 0 1972 113 0 8 chr11 35073681 35073947 -113709525 - AluSg SINE Alu -9 301 38 386 281 21 0 chr11 35074805 35074901 -113708571 + MIR3 SINE MIR 87 184 -24 289 297 117 9 chr11 35075227 35075449 -113708023 - L1MC/D LINE L1 -2005 5803 5558 1511 164 124 7 chr11 35075872 35076146 -113707326 + AluJo SINE Alu 3 308 -4 3320 32 17 0 chr11 35080616 35081023 -113702449 - L1PA4 LINE L1 -1 6154 5741 440 297 90 7 chr11 35081154 35081299 -113702173 - MIR SINE MIR -86 176 20 188 347 55 40 chr11 35081762 35081844 -113701628 + L2 LINE L2 2553 2632 -682 1968 161 0 16 chr11 35081844 35082160 -113701312 - AluJo SINE Alu -1 311 1 188 347 55 40 chr11 35082160 35082276 -113701196 + L2 LINE L2 2632 2754 -560 213 240 227 87 chr11 35082660 35082810 -113700662 + MIR SINE MIR 15 185 -77 308 253 22 65 chr11 35084041 35084277 -113699195 - L1ME LINE L1 -5426 657 446 247 265 12 24 chr11 35084394 35084477 -113698995 - L1ME LINE L1 -5669 401 320 198 0 0 0 chr11 35084521 35084543 -113698929 + (T)n Simple_repeat Simple_repeat 1 22 0 324 311 68 26 chr11 35084930 35085120 -113698352 - L1 LINE L1 -2343 3803 3606 290 261 124 40 chr11 35085221 35085745 -113697727 - L1 LINE L1 -2703 3443 2876 233 29 0 29 chr11 35085786 35085821 -113697651 + (TTA)n Simple_repeat Simple_repeat 3 36 0 41212 33 21 0 chr11 35085821 35091827 -113691645 - L1PA3 LINE L1 -18 6137 1 334 247 138 35 chr11 35092061 35092235 -113691237 + L1MC5 LINE L1 7734 7925 -36 371 283 190 12 chr11 35092237 35092495 -113690977 - L1 LINE L1 -3531 2615 2312 309 304 33 22 chr11 35092694 35092875 -113690597 + L1M4 LINE L1 2872 3054 -3092 1086 184 0 23 chr11 35093000 35093218 -113690254 + AluJo SINE Alu 87 299 -13 324 230 65 50 chr11 35093337 35093476 -113689996 - L1MC5 LINE L1 -50 7911 7771 819 229 192 22 chr11 35093827 35094281 -113689191 + Charlie2 DNA MER1_type 1988 2518 -344 2199 114 3 0 chr11 35094666 35094964 -113688508 - AluSx SINE Alu -13 299 1 2637 200 133 3 chr11 35095111 35095752 -113687720 - L1MB8 LINE L1 0 6178 5455 4655 219 121 19 chr11 35095759 35096409 -113687063 - L1MB8 LINE L1 -1247 4899 4316 2341 87 0 7 chr11 35096409 35096709 -113686763 - AluSq SINE Alu -13 300 3 4655 219 121 19 chr11 35096709 35097373 -113686099 - L1MB8 LINE L1 -1830 4316 3422 2218 101 14 0 chr11 35097373 35097670 -113685802 - AluSg SINE Alu -9 301 1 4655 219 121 19 chr11 35097670 35097804 -113685668 - L1MB8 LINE L1 -2724 3422 3303 1004 181 9 8 chr11 35097915 35098145 -113685327 - AluJo SINE Alu -4 308 1 184 222 79 48 chr11 35098502 35098565 -113684907 - L3 LINE CR1 -686 891 827 21 57 0 0 chr11 35099060 35099095 -113684377 + AT_rich Low_complexity Low_complexity 1 35 0 760 134 0 25 chr11 35099253 35099372 -113684100 - AluJo SINE Alu -179 133 18 547 298 10 62 chr11 35099606 35099814 -113683658 + L3 LINE CR1 1375 1571 -6 32 67 0 0 chr11 35101025 35101085 -113682387 + AT_rich Low_complexity Low_complexity 1 60 0 1852 157 39 0 chr11 35101353 35101634 -113681838 - AluJb SINE Alu -20 292 1 2454 78 3 0 chr11 35101699 35102005 -113681467 - AluSx SINE Alu 0 312 6 197 239 45 60 chr11 35102893 35102960 -113680512 + MIR3 SINE MIR 122 187 -21 1829 154 21 0 chr11 35102962 35103247 -113680225 - AluJo SINE Alu -17 295 5 22 35 0 0 chr11 35103320 35103349 -113680123 + AT_rich Low_complexity Low_complexity 1 29 0 674 156 39 0 chr11 35103482 35103610 -113679862 - Charlie1a DNA MER1_type -5 1450 1318 914 215 72 5 chr11 35103687 35103896 -113679576 + MER58A DNA MER1_type 1 223 -1 1957 148 3 16 chr11 35104331 35104634 -113678838 - AluJb SINE Alu -11 301 3 649 221 0 0 chr11 35104668 35104790 -113678682 + FLAM_A SINE Alu 3 124 -9 2238 108 0 10 chr11 35104844 35105149 -113678323 + AluSq SINE Alu 1 302 -11 938 193 171 53 chr11 35105467 35106010 -113677462 - Charlie1a DNA MER1_type -2 1453 778 4240 145 42 61 chr11 35106039 35107215 -113676257 - L1MB4 LINE L1 -8 6172 5015 2232 196 29 22 chr11 35107222 35107712 -113675760 - Charlie1a DNA MER1_type -686 769 277 1184 140 82 14 chr11 35107718 35107925 -113675547 - AluJb SINE Alu -5 307 87 2147 96 14 3 chr11 35107928 35108220 -113675252 - AluSg SINE Alu -15 295 1 1544 199 7 14 chr11 35108259 35108536 -113674936 - AluJo SINE Alu -37 275 1 1556 191 18 18 chr11 35108562 35108844 -113674628 - AluJo SINE Alu -30 282 1 846 200 65 88 chr11 35108847 35109107 -113674365 - Charlie1a DNA MER1_type -1174 281 28 811 168 15 0 chr11 35109153 35109284 -113674188 + FLAM_C SINE Alu 1 133 0 261 0 0 0 chr11 35109288 35109317 -113674155 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 441 81 0 0 chr11 35109316 35109378 -113674094 + (CA)n Simple_repeat Simple_repeat 2 63 0 841 152 16 0 chr11 35109474 35109599 -113673873 - FLAM_A SINE Alu -6 127 1 1697 181 0 13 chr11 35109676 35109986 -113673486 - AluJo SINE Alu -3 309 4 2184 96 21 0 chr11 35110239 35110519 -113672953 + AluSq SINE Alu 1 286 -27 486 0 0 0 chr11 35110519 35110573 -113672899 + (CA)n Simple_repeat Simple_repeat 2 55 0 223 226 30 167 chr11 35110573 35110741 -113672731 - MER5B DNA MER1_type -29 149 5 545 204 8 57 chr11 35111469 35111579 -113671893 - L1PB3 LINE L1 -513 5641 5534 3364 95 65 0 chr11 35111579 35112064 -113671408 + L1PB3 LINE L1 5623 6147 -7 545 204 8 57 chr11 35112064 35112082 -113671390 - L1P2 LINE L1 -620 5534 5517 609 186 0 0 chr11 35112094 35112191 -113671281 - MER7A DNA MER2_type -250 96 2 414 268 159 13 chr11 35112222 35112395 -113671077 - MIR3 SINE MIR -59 203 7 303 333 170 20 chr11 35112436 35112583 -113670889 - MIR3 SINE MIR -24 184 16 2239 128 0 0 chr11 35114259 35114571 -113668901 - AluSx SINE Alu 0 312 1 338 118 147 29 chr11 35114589 35114657 -113668815 - LTR49 LTR ERV1 -77 567 459 339 200 15 0 chr11 35114859 35114924 -113668548 + Charlie1 DNA MER1_type 1498 1563 -1198 205 320 0 0 chr11 35114932 35114982 -113668490 - MIR SINE MIR -129 79 30 1977 156 0 3 chr11 35114984 35115292 -113668180 - AluSx SINE Alu -5 307 1 1740 100 141 0 chr11 35115533 35115802 -113667670 - AluSx SINE Alu -5 307 1 2509 54 0 0 chr11 35116374 35116670 -113666802 + AluY SINE Alu 6 301 -10 2033 145 0 0 chr11 35116994 35117319 -113666153 - AluSx SINE Alu 0 325 1 292 262 12 46 chr11 35117673 35117781 -113665691 - MLT1H LTR MaLR -402 147 15 181 239 65 0 chr11 35118314 35118360 -113665112 + L2 LINE L2 3216 3264 -8 477 140 86 9 chr11 35118426 35118543 -113664929 - L1MA8 LINE L1 -23 6268 6152 248 184 41 0 chr11 35118650 35118699 -113664773 + L1ME LINE L1 5543 5593 -528 1801 155 13 30 chr11 35118722 35119025 -113664447 + AluJo SINE Alu 1 298 -14 494 262 40 16 chr11 35119191 35119317 -113664155 - L2 LINE L2 -1 3312 3184 23 33 0 0 chr11 35119648 35119678 -113663794 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 35123059 35123080 -113660392 + AT_rich Low_complexity Low_complexity 1 21 0 1768 116 153 0 chr11 35123462 35123763 -113659709 - MER7A DNA MER2_type 0 346 2 24 0 0 0 chr11 35123929 35123953 -113659519 + AT_rich Low_complexity Low_complexity 1 24 0 2148 109 7 0 chr11 35125146 35125429 -113658043 + AluSc SINE Alu 5 289 -20 1639 145 119 0 chr11 35125984 35126253 -113657219 - AluSx SINE Alu -11 301 1 1784 136 11 0 chr11 35126500 35126773 -113656699 - AluJb SINE Alu -36 276 1 1888 170 0 3 chr11 35127477 35127788 -113655684 - AluJo SINE Alu -2 310 1 383 374 59 20 chr11 35127810 35128013 -113655459 + L2 LINE L2 3061 3271 -1 630 111 130 0 chr11 35128323 35128431 -113655041 + FRAM SINE Alu 36 157 -19 264 277 125 49 chr11 35128553 35128737 -113654735 + MIR3 SINE MIR 5 202 -6 2345 97 0 0 chr11 35129177 35129486 -113653986 - AluSc SINE Alu 0 309 1 1645 158 79 4 chr11 35130077 35130355 -113653117 + AluJo SINE Alu 7 305 -7 1278 180 137 49 chr11 35130408 35130683 -113652789 - MLT1A2 LTR MaLR 0 374 124 1929 144 0 0 chr11 35130683 35130968 -113652504 + AluSx SINE Alu 1 285 -27 264 91 0 0 chr11 35130968 35131012 -113652460 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1278 180 137 49 chr11 35131012 35131079 -113652393 - MLT1A2 LTR MaLR -249 125 1 572 291 116 12 chr11 35131324 35131582 -113651890 + L2 LINE L2 2510 2794 -520 522 227 60 7 chr11 35131583 35131733 -113651739 + L1MEc LINE L1 37 194 -6202 465 165 110 0 chr11 35131722 35131831 -113651641 + L1M LINE L1 5281 5401 -890 * 2014 113 40 0 chr11 35131832 35132106 -113651366 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr11 35132106 35132129 -113651343 + (CA)n Simple_repeat Simple_repeat 2 24 0 2054 139 3 7 chr11 35132139 35132448 -113651024 - AluSx SINE Alu -2 310 3 1781 126 8 129 chr11 35132506 35132887 -113650585 + MER1B DNA MER1_type 3 337 0 2024 187 87 24 chr11 35132982 35133443 -113650029 - LTR2B LTR ERV1 0 490 1 3987 181 26 53 chr11 35133443 35134268 -113649204 + L1MB2 LINE L1 4735 5500 -671 718 157 0 79 chr11 35134268 35134408 -113649064 + FLAM_C SINE Alu 5 133 0 3987 181 26 53 chr11 35134408 35135019 -113648453 + L1MB2 LINE L1 5500 6126 -45 959 184 5 53 chr11 35135023 35135282 -113648190 + AluJo SINE Alu 85 333 0 2259 102 17 0 chr11 35135721 35136016 -113647456 - AluSg SINE Alu -10 300 1 1079 220 20 52 chr11 35136567 35136859 -113646613 - L1MDa LINE L1 -3867 2777 2511 1544 190 7 37 chr11 35136859 35137154 -113646318 - AluJo SINE Alu -26 286 1 1079 220 20 52 chr11 35137154 35137365 -113646107 - L1MDa LINE L1 -4133 2511 2295 668 212 0 0 chr11 35137471 35137589 -113645883 - FLAM_A SINE Alu -15 127 10 3782 211 55 24 chr11 35137602 35137658 -113645814 - L1MDa LINE L1 -4897 1645 1592 1571 179 80 54 chr11 35137658 35138044 -113645428 - MSTD LTR MaLR 0 396 1 3782 211 55 24 chr11 35138044 35138320 -113645152 - L1MDa LINE L1 -4950 1592 1326 2248 111 7 0 chr11 35138320 35138617 -113644855 - AluSx SINE Alu -13 299 1 3782 211 55 24 chr11 35138617 35139289 -113644183 - L1MDa LINE L1 -5216 1326 609 1543 165 22 11 chr11 35139296 35139586 -113643886 - AluJo SINE Alu 0 304 12 17942 160 55 27 chr11 35139595 35142475 -113640997 - L1PA11 LINE L1 0 7612 4814 2286 80 0 27 chr11 35142475 35142774 -113640698 - AluSc SINE Alu -18 291 1 17942 160 55 27 chr11 35142774 35143796 -113639676 - L1PA11 LINE L1 -2798 4814 3822 1989 70 114 7 chr11 35143796 35144068 -113639404 - AluY SINE Alu -10 301 1 17942 160 55 27 chr11 35144068 35144105 -113639367 - L1PA11 LINE L1 -3790 3822 3788 1071 124 0 0 chr11 35144105 35144250 -113639222 - AluSg/x SINE Alu -34 276 132 17942 160 55 27 chr11 35144250 35146763 -113636709 - L1PA11 LINE L1 -3824 3788 4 499 183 10 29 chr11 35146772 35146876 -113636596 - L1MDa LINE L1 -5944 598 497 945 214 62 5 chr11 35146930 35147154 -113636318 - L1M4 LINE L1 -6290 252 16 234 0 0 0 chr11 35147231 35147257 -113636215 + (CA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr11 35147588 35147615 -113635857 + AT_rich Low_complexity Low_complexity 1 27 0 2213 118 3 0 chr11 35147834 35148139 -113635333 - AluSc SINE Alu -3 306 1 237 269 32 54 chr11 35148286 35148379 -113635093 - MIR SINE MIR -88 120 30 1130 168 92 65 chr11 35148387 35148679 -113634793 - L1MDa LINE L1 -6224 420 121 229 273 0 18 chr11 35148745 35148821 -113634651 + polypyrimidine Low_complexity Low_complexity 1 74 0 574 156 0 0 chr11 35148827 35148917 -113634555 - HY4 scRNA scRNA -3 90 1 352 157 14 14 chr11 35148921 35148991 -113634481 + MER69 DNA AcHobo 2457 2526 0 236 220 0 0 chr11 35148991 35149041 -113634431 + L2 LINE L2 3264 3313 0 182 304 22 0 chr11 35149395 35149441 -113634031 - MER5B DNA MER1_type 0 178 132 868 254 61 96 chr11 35150353 35150830 -113632642 - L2 LINE L2 -1 3312 2853 1101 190 56 0 chr11 35150882 35151098 -113632374 - AluJb SINE Alu -4 308 81 1647 231 97 28 chr11 35151100 35151564 -113631908 - L2 LINE L2 -600 2714 2219 1250 157 10 0 chr11 35151577 35151775 -113631697 - AluJb SINE Alu -28 284 85 701 196 30 0 chr11 35151777 35151910 -113631562 - AluJb SINE Alu -173 139 3 649 250 114 11 chr11 35151912 35152096 -113631376 - L2 LINE L2 -1100 2214 2012 417 167 11 33 chr11 35152143 35152233 -113631239 - AluJ/FRAM SINE Alu -5 307 220 1720 202 7 0 chr11 35152293 35152600 -113630872 - AluSx SINE Alu -3 309 1 1580 172 20 30 chr11 35152635 35152931 -113630541 + AluJo SINE Alu 1 293 -19 351 293 23 30 chr11 35153678 35153811 -113629661 - L2 LINE L2 0 3313 3182 1960 125 57 0 chr11 35153938 35154217 -113629255 + AluSg SINE Alu 1 295 -15 1533 150 73 42 chr11 35154226 35154513 -113628959 + AluJb SINE Alu 1 296 -16 1538 164 47 47 chr11 35154519 35154818 -113628654 + AluJo SINE Alu 1 299 -13 217 243 57 43 chr11 35154863 35154933 -113628539 + MER5A DNA MER1_type 69 139 -50 1125 170 0 65 chr11 35155223 35155452 -113628020 + AluJb SINE Alu 87 300 -12 2253 115 3 6 chr11 35155778 35156090 -113627382 - AluSx SINE Alu -1 311 1 1962 151 0 10 chr11 35156676 35156981 -113626491 - AluJb SINE Alu -2 310 9 2225 108 3 3 chr11 35157180 35157476 -113625996 - AluSp SINE Alu -16 297 2 5790 40 0 1 chr11 35157517 35158212 -113625260 + L1PA5 LINE L1 5455 6148 -6 2025 113 17 7 chr11 35158801 35159094 -113624378 - AluSg SINE Alu -14 296 1 195 184 0 0 chr11 35159691 35159729 -113623743 + (TTA)n Simple_repeat Simple_repeat 3 40 0 351 253 30 84 chr11 35159738 35159904 -113623568 - MIR SINE MIR -18 244 88 2404 75 3 0 chr11 35159919 35160226 -113623246 - AluSx SINE Alu -4 308 1 202 197 30 30 chr11 35160623 35160689 -113622783 + (CGGGG)n Simple_repeat Simple_repeat 4 69 0 863 116 106 40 chr11 35163262 35163461 -113620011 - L1MC3 LINE L1 -120 7665 7454 285 347 10 30 chr11 35163559 35163675 -113619797 - MIR SINE MIR -92 116 9 925 125 190 0 chr11 35163740 35163924 -113619548 - MER20 DNA MER1_type 0 219 1 2124 147 0 0 chr11 35163959 35164252 -113619220 + AluSx SINE Alu 5 297 -15 814 191 13 13 chr11 35165219 35165371 -113618101 - FRAM SINE Alu -12 154 3 2338 90 3 13 chr11 35165538 35165848 -113617624 + AluSg SINE Alu 1 307 -3 343 269 218 6 chr11 35166985 35167141 -113616331 + MIR SINE MIR 72 260 -2 922 52 0 35 chr11 35167550 35167665 -113615807 + AluY SINE Alu 36 146 -165 * 1357 157 17 8 chr11 35167664 35167900 -113615572 + AluJb SINE Alu 69 306 -6 801 200 0 0 chr11 35167901 35168051 -113615421 - MER6B DNA MER2_type -60 150 1 285 184 146 0 chr11 35169373 35169476 -113613996 - L1MC4 LINE L1 0 8042 7925 1856 137 3 24 chr11 35170244 35170536 -113612936 - AluJb SINE Alu -15 297 12 451 304 39 34 chr11 35170932 35171136 -113612336 - MIR SINE MIR -56 206 2 337 178 41 0 chr11 35171554 35171627 -113611845 + L1MB7 LINE L1 6099 6174 -10 296 279 161 25 chr11 35171847 35172008 -113611464 + L2 LINE L2 2866 3048 -224 955 132 147 57 chr11 35172018 35172242 -113611230 - MER33 DNA MER1_type -2266 319 60 2273 108 0 0 chr11 35172242 35172539 -113610933 - AluSg SINE Alu -13 297 1 955 132 147 57 chr11 35172539 35172615 -113610857 - MER33 DNA MER1_type -2525 60 1 374 278 71 0 chr11 35172710 35172836 -113610636 - MIR SINE MIR -10 252 118 180 111 0 0 chr11 35173000 35173027 -113610445 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 23 78 0 0 chr11 35173086 35173137 -113610335 + AT_rich Low_complexity Low_complexity 1 51 0 2242 93 0 3 chr11 35173400 35173729 -113609743 - AluSq SINE Alu 0 328 1 810 154 119 28 chr11 35173749 35173892 -113609580 - FRAM SINE Alu -23 153 1 192 236 112 56 chr11 35173942 35174031 -113609441 + MIR SINE MIR 169 262 0 2368 25 7 4 chr11 35174069 35174387 -113609085 + AluY SINE Alu 1 319 0 660 110 73 0 chr11 35175680 35175789 -113607683 - L1MB7 LINE L1 -16 6168 6052 2277 90 3 0 chr11 35175906 35176196 -113607276 - AluSg SINE Alu -19 291 1 215 329 86 0 chr11 35176298 35176368 -113607104 + L2 LINE L2 3197 3272 0 292 322 34 34 chr11 35176445 35176563 -113606909 + L2 LINE L2 3151 3268 -4 668 228 37 37 chr11 35176942 35177157 -113606315 + L1ME1 LINE L1 5934 6148 -18 261 263 0 0 chr11 35177788 35177845 -113605627 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 991 166 37 0 chr11 35178430 35178593 -113604879 - AluJb SINE Alu -15 297 129 1290 158 5 0 chr11 35178604 35178806 -113604666 + AluY SINE Alu 1 203 -108 333 55 0 18 chr11 35178906 35178961 -113604511 + Alu SINE Alu 245 298 -2 901 110 0 0 chr11 35178968 35179086 -113604386 - AluJb SINE Alu -194 118 1 445 298 43 120 chr11 35179092 35179491 -113603981 - L2 LINE L2 -16 3256 2889 855 284 62 25 chr11 35179505 35179941 -113603531 + L1ME LINE L1 13 464 -5606 977 243 48 65 chr11 35180183 35180752 -113602720 + L1ME LINE L1 529 1087 -4983 26 107 0 0 chr11 35181778 35181881 -113601591 + AT_rich Low_complexity Low_complexity 1 103 0 2143 105 3 7 chr11 35182086 35182371 -113601101 + AluSx SINE Alu 13 296 -16 1520 184 48 24 chr11 35182421 35182714 -113600758 - AluJo SINE Alu -12 300 1 1205 169 75 24 chr11 35182819 35183074 -113600398 + Charlie1b DNA MER1_type 42 309 -214 1859 166 27 3 chr11 35183077 35183372 -113600100 + AluJb SINE Alu 1 302 -10 883 150 0 0 chr11 35183503 35183636 -113599836 - FLAM_C SINE Alu 0 133 1 278 132 8 0 chr11 35184314 35184373 -113599099 + L1P5 LINE L1 5600 5660 -494 * 335 40 20 0 chr11 35184366 35184416 -113599056 + L1P5 LINE L1 5556 5606 -550 23 33 0 0 chr11 35184676 35184706 -113598766 + AT_rich Low_complexity Low_complexity 1 30 0 1912 159 0 26 chr11 35184715 35185023 -113598449 + AluJo SINE Alu 1 300 -12 701 204 0 0 chr11 35185039 35185171 -113598301 + FLAM_C SINE Alu 6 137 -6 615 174 0 0 chr11 35185578 35185670 -113597802 + AluJb SINE Alu 3 94 -218 1188 156 0 29 chr11 35185713 35185918 -113597554 + AluJb SINE Alu 96 294 -18 505 306 65 90 chr11 35187439 35187762 -113595710 - L2 LINE L2 -31 3241 2927 555 250 85 30 chr11 35188098 35188298 -113595174 + MIR SINE MIR 52 262 0 687 279 67 44 chr11 35189187 35189539 -113593933 + L1MC4a LINE L1 5298 5667 -2141 2140 104 20 3 chr11 35189539 35189836 -113593636 + AluSg SINE Alu 1 302 -8 687 279 67 44 chr11 35189836 35190003 -113593469 + L1MC4a LINE L1 5667 5829 -1979 30 45 0 0 chr11 35190036 35190080 -113593392 + AT_rich Low_complexity Low_complexity 1 44 0 2263 117 0 0 chr11 35190562 35190860 -113592612 + AluSq SINE Alu 1 298 -15 324 252 109 34 chr11 35190918 35191037 -113592435 + MIR SINE MIR 88 215 -47 1909 133 7 0 chr11 35191527 35191839 -113591633 + AluSx SINE Alu 12 325 0 937 177 0 7 chr11 35191955 35192132 -113591340 + FRAM SINE Alu 1 175 0 23 0 0 0 chr11 35192236 35192259 -113591213 + AT_rich Low_complexity Low_complexity 1 23 0 894 121 0 30 chr11 35192360 35192492 -113590980 + FLAM_C SINE Alu 1 128 -5 2322 89 10 0 chr11 35193156 35193447 -113590025 + AluSq SINE Alu 1 294 -19 397 235 96 17 chr11 35194134 35194249 -113589223 - L2 LINE L2 0 3313 3190 674 184 7 52 chr11 35194371 35194507 -113588965 + AluJb SINE Alu 2 131 -181 676 192 56 18 chr11 35196028 35196228 -113587244 - MIR SINE MIR -2 260 2 345 299 104 26 chr11 35198616 35198847 -113584625 + L1ME4a LINE L1 5615 5863 -258 263 281 16 0 chr11 35199258 35199322 -113584150 + L2 LINE L2 3205 3269 -3 1907 160 3 3 chr11 35201210 35201522 -113581950 + AluJo SINE Alu 1 312 0 1183 221 120 35 chr11 35201763 35202246 -113581226 + L1MC/D LINE L1 5296 5819 -1989 249 196 0 0 chr11 35202462 35202518 -113580954 + (TA)n Simple_repeat Simple_repeat 2 57 0 464 282 110 27 chr11 35203362 35203833 -113579639 - L1MEd LINE L1 -4784 1526 981 337 320 74 29 chr11 35203952 35204127 -113579345 - L1MEd LINE L1 -5448 671 489 351 338 71 71 chr11 35204147 35204585 -113578887 - L1MEd LINE L1 -5666 453 16 1426 173 60 25 chr11 35204754 35205038 -113578434 + AluJo SINE Alu 1 294 -18 822 286 168 28 chr11 35205339 35205727 -113577745 - L2 LINE L2 -5 3308 2867 449 123 0 0 chr11 35206205 35206270 -113577202 - Alu SINE Alu -13 298 234 1991 131 0 0 chr11 35207693 35207968 -113575504 - AluSx SINE Alu -37 275 1 2096 109 11 0 chr11 35208767 35209051 -113574421 + AluSq SINE Alu 1 287 -26 1188 125 0 180 chr11 35209339 35209611 -113573861 + AluJb SINE Alu 65 287 -25 2309 51 14 20 chr11 35210141 35210435 -113573037 + AluY SINE Alu 1 292 -19 686 164 8 16 chr11 35210981 35211103 -113572369 - FLAM_C SINE Alu -12 121 1 26 50 0 0 chr11 35211417 35211457 -113572015 + AT_rich Low_complexity Low_complexity 1 40 0 1294 269 203 4 chr11 35211834 35212157 -113571315 + L1MC4 LINE L1 7191 7448 -594 1330 114 249 0 chr11 35212157 35212394 -113571078 + AluSx SINE Alu 1 296 -6 1294 269 203 4 chr11 35212394 35212779 -113570693 + L1MC4 LINE L1 7448 8040 -2 260 305 47 23 chr11 35214005 35214133 -113569339 - MER5B DNA MER1_type -42 136 6 237 250 162 0 chr11 35214162 35214230 -113569242 + MIR3 SINE MIR 121 199 -9 26 74 0 0 chr11 35214892 35214946 -113568526 + AT_rich Low_complexity Low_complexity 1 54 0 33 25 0 0 chr11 35218239 35218279 -113565193 + AT_rich Low_complexity Low_complexity 1 40 0 185 108 27 0 chr11 35218970 35219007 -113564465 + (CATA)n Simple_repeat Simple_repeat 1 38 0 296 206 0 0 chr11 35220348 35220416 -113563056 - HAL1 LINE L1 -343 2164 2097 1435 184 63 24 chr11 35220721 35221052 -113562420 - MER2 DNA MER2_type 0 344 1 1845 191 137 2 chr11 35221150 35221611 -113561861 - Charlie1b DNA MER1_type 0 523 1 1812 149 4 0 chr11 35222041 35222309 -113561163 + AluSx SINE Alu 1 269 -43 2017 86 16 0 chr11 35222313 35222569 -113560903 + AluY SINE Alu 32 291 -20 307 325 17 8 chr11 35223126 35223246 -113560226 + L1M4 LINE L1 4915 5035 -1111 1335 172 19 15 chr11 35223301 35223563 -113559909 + AluJb SINE Alu 33 295 -17 1528 170 43 18 chr11 35223724 35224006 -113559466 + AluJb SINE Alu 1 289 -23 32 0 0 0 chr11 35224007 35224039 -113559433 + AT_rich Low_complexity Low_complexity 1 32 0 2137 101 0 16 chr11 35224101 35224409 -113559063 + AluY SINE Alu 1 303 -8 2188 110 0 19 chr11 35224528 35224837 -113558635 + AluSx SINE Alu 1 303 -9 896 209 0 0 chr11 35224978 35225126 -113558346 + FRAM SINE Alu 1 146 -30 21 36 0 0 chr11 35225132 35225160 -113558312 + AT_rich Low_complexity Low_complexity 1 28 0 316 294 119 0 chr11 35225322 35225448 -113558024 - L2 LINE L2 -2 3311 3171 866 141 7 7 chr11 35225458 35225593 -113557879 + AluJo SINE Alu 1 135 -177 1526 167 44 24 chr11 35225593 35225887 -113557585 + AluJo SINE Alu 1 300 -12 1972 112 65 0 chr11 35225889 35226167 -113557305 + AluSg SINE Alu 1 296 -14 600 222 45 57 chr11 35226808 35226984 -113556488 + MER5B DNA MER1_type 2 175 -3 2073 124 7 0 chr11 35226992 35227283 -113556189 + AluSx SINE Alu 4 296 -16 421 231 0 0 chr11 35227307 35227385 -113556087 - Charlie4 DNA MER1_type -17 1944 1867 663 163 47 16 chr11 35227436 35227565 -113555907 - FLAM_A SINE Alu 0 133 1 508 176 84 53 chr11 35227649 35227780 -113555692 - Charlie4 DNA MER1_type -1802 159 25 2003 110 39 29 chr11 35228188 35228311 -113555161 + AluSx SINE Alu 1 121 -191 2284 105 0 0 chr11 35228311 35228637 -113554835 + AluSx SINE Alu 1 326 0 2003 110 39 29 chr11 35228637 35228819 -113554653 + AluSx SINE Alu 121 312 0 2004 139 3 0 chr11 35229149 35229444 -113554028 + AluJb SINE Alu 1 296 -16 3497 158 86 33 chr11 35229493 35229752 -113553720 - L1MB8 LINE L1 0 6178 5934 1789 173 16 7 chr11 35229752 35230059 -113553413 - AluJb SINE Alu -1 311 2 3497 158 86 33 chr11 35230059 35230616 -113552856 - L1MB8 LINE L1 -244 5934 5408 1490 138 0 24 chr11 35230616 35230862 -113552610 + AluSg/x SINE Alu 69 308 -2 3497 158 86 33 chr11 35230862 35230881 -113552591 - L1MB8 LINE L1 -770 5408 5391 771 182 0 0 chr11 35230881 35231002 -113552470 - FLAM_A SINE Alu -12 121 1 3497 158 86 33 chr11 35231002 35231107 -113552365 - L1MB8 LINE L1 -787 5391 5190 1087 166 156 70 chr11 35231193 35231253 -113552219 - Charlie1 DNA MER1_type 0 2761 2708 2186 90 14 3 chr11 35231253 35231542 -113551930 + AluSg SINE Alu 1 292 -18 1087 166 156 70 chr11 35231542 35231898 -113551574 - Charlie1 DNA MER1_type -53 2708 2309 773 222 0 0 chr11 35232066 35232249 -113551223 + FRAM SINE Alu 1 47 0 2205 112 0 13 chr11 35233062 35233367 -113550105 - AluSg SINE Alu -4 306 6 2226 103 0 31 chr11 35233648 35233969 -113549503 + AluY SINE Alu 1 311 0 705 143 9 0 chr11 35235272 35235377 -113548095 + FLAM_C SINE Alu 14 119 -24 23 0 0 0 chr11 35235385 35235408 -113548064 + AT_rich Low_complexity Low_complexity 1 23 0 2397 93 0 6 chr11 35235644 35235956 -113547516 + AluSx SINE Alu 1 310 -2 377 242 155 19 chr11 35236617 35236778 -113546694 + L1MC5 LINE L1 7749 7931 -30 245 199 273 28 chr11 35237048 35237224 -113546248 + L1MC4 LINE L1 7162 7380 -662 270 183 65 54 chr11 35237288 35237381 -113546091 + L1MC5 LINE L1 7301 7394 -567 409 257 163 47 chr11 35237501 35237747 -113545725 + L1MC4 LINE L1 7617 7924 -118 1438 155 17 48 chr11 35237747 35237887 -113545585 + AluJb SINE Alu 3 131 -181 2285 93 3 3 chr11 35237887 35238199 -113545273 + AluSx SINE Alu 1 312 0 1438 155 17 48 chr11 35238199 35238349 -113545123 + AluJb SINE Alu 131 284 -28 409 257 163 47 chr11 35238349 35238483 -113544989 + L1MC4 LINE L1 7924 8041 -1 351 209 301 13 chr11 35240596 35240749 -113542723 + MIR SINE MIR 32 228 -34 532 154 0 0 chr11 35240769 35240847 -113542625 + AluSx SINE Alu 3 80 -233 2340 51 3 42 chr11 35240849 35241160 -113542312 + AluY SINE Alu 1 299 -12 1543 102 58 9 chr11 35241160 35241384 -113542088 + AluSx SINE Alu 66 302 -8 794 138 24 0 chr11 35241793 35241916 -113541556 - MER46A DNA MER2_type -84 152 27 1394 79 0 0 chr11 35241925 35242102 -113541370 - AluSg/x SINE Alu -10 302 126 2037 98 6 35 chr11 35242102 35242418 -113541054 - AluY SINE Alu -4 307 1 225 133 0 0 chr11 35242418 35242448 -113541024 - MER46A DNA MER2_type -206 30 1 192 40 0 0 chr11 35242449 35242474 -113540998 + (TA)n Simple_repeat Simple_repeat 1 25 0 2306 104 0 0 chr11 35242474 35242782 -113540690 - AluSx SINE Alu -4 308 1 1972 145 7 0 chr11 35242960 35243256 -113540216 - AluSx SINE Alu -14 298 1 227 278 120 0 chr11 35243292 35243400 -113540072 - L1MC4 LINE L1 -31 8011 7891 22 0 0 0 chr11 35243414 35243436 -113540036 + AT_rich Low_complexity Low_complexity 1 22 0 245 295 48 0 chr11 35243469 35243574 -113539898 - L1MC4 LINE L1 -140 7902 7793 1703 161 32 4 chr11 35243587 35243867 -113539605 + AluJo SINE Alu 1 288 -24 2368 67 0 26 chr11 35243900 35244213 -113539259 + AluY SINE Alu 1 305 -6 546 196 35 28 chr11 35244261 35244404 -113539068 + L2 LINE L2 1869 2012 -1302 1543 170 40 14 chr11 35244457 35244733 -113538739 - AluJo SINE Alu -29 283 1 256 254 30 0 chr11 35244735 35244802 -113538670 + L2 LINE L2 1998 2066 -1248 315 0 0 0 chr11 35244807 35244842 -113538630 + (TG)n Simple_repeat Simple_repeat 2 36 0 2364 103 0 0 chr11 35245327 35245637 -113537835 - AluSg SINE Alu 0 310 1 944 138 6 40 chr11 35246392 35246566 -113536906 - FRAM SINE Alu -17 159 1 1885 88 0 4 chr11 35247911 35248161 -113535311 + AluSg SINE Alu 60 308 -2 2237 124 0 0 chr11 35248374 35248681 -113534791 + AluSx SINE Alu 2 308 -4 2220 93 4 0 chr11 35249308 35249612 -113533860 + AluSc SINE Alu 1 305 0 509 182 30 6 chr11 35249716 35249885 -113533587 + L1ME1 LINE L1 4549 4757 -1389 901 46 28 0 chr11 35249923 35250031 -113533441 - HY1 scRNA scRNA -1 111 1 2179 222 35 4 chr11 35250036 35250527 -113532945 + L1ME1 LINE L1 5561 6066 -100 913 133 8 0 chr11 35250544 35250672 -113532800 + AluSq/x SINE Alu 1 129 -183 304 243 14 0 chr11 35250698 35250772 -113532700 + L1ME1 LINE L1 6074 6148 -18 2024 134 0 0 chr11 35250782 35251108 -113532364 + AluSx SINE Alu 1 326 0 2068 171 16 8 chr11 35251138 35251512 -113531960 + L1MB2 LINE L1 5793 6169 -2 305 211 39 59 chr11 35251636 35251800 -113531672 - LTR33 LTR ERVL -184 337 75 283 246 0 0 chr11 35251857 35251918 -113531554 - LTR67 LTR ERVL -2 555 495 913 252 41 31 chr11 35252127 35252445 -113531027 - L1MC4 LINE L1 -20 8022 7702 312 245 103 45 chr11 35252481 35252636 -113530836 - L1MC5 LINE L1 -469 7492 7329 268 266 186 9 chr11 35252637 35252750 -113530722 - L1MC4a LINE L1 -417 7391 7259 2001 146 0 3 chr11 35252815 35253110 -113530362 - AluJb SINE Alu -18 294 1 377 183 24 194 chr11 35253123 35253257 -113530215 + L1MEd LINE L1 991 1064 -5055 738 229 0 0 chr11 35253257 35253379 -113530093 + FLAM_A SINE Alu 1 122 -11 377 183 24 194 chr11 35253379 35253496 -113529976 + L1MEd LINE L1 1064 1199 -4920 1101 141 24 6 chr11 35253523 35253693 -113529779 - AluSq SINE Alu -140 173 1 609 296 60 40 chr11 35253747 35254098 -113529374 + L1MEd LINE L1 1313 1670 -4640 451 288 59 81 chr11 35254246 35254604 -113528868 + L1MEd LINE L1 1870 2219 -4091 2385 84 7 0 chr11 35254649 35254948 -113528524 - AluSp SINE Alu -7 306 6 380 295 48 14 chr11 35254986 35255196 -113528276 + L1MEd LINE L1 2213 2429 -3700 593 244 175 17 chr11 35255205 35255296 -113528176 + L2 LINE L2 2067 2142 -1172 1407 194 3 99 chr11 35255296 35255488 -113527984 - AluJo SINE Alu -18 284 132 279 0 0 0 chr11 35255488 35255519 -113527953 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1407 194 3 99 chr11 35255519 35255640 -113527832 - AluJo SINE Alu -170 132 1 593 244 175 17 chr11 35255640 35255782 -113527690 + L2 LINE L2 2142 2337 -977 840 161 0 32 chr11 35255788 35255943 -113527529 + FRAM SINE Alu 20 169 -7 1096 264 6 54 chr11 35255961 35256295 -113527177 + L2 LINE L2 2343 2660 -654 1220 221 78 10 chr11 35256295 35256603 -113526869 - LTR16B LTR ERVL 0 464 136 499 256 45 8 chr11 35256701 35256834 -113526638 + L2 LINE L2 2661 2798 -516 2826 101 16 0 chr11 35257065 35257432 -113526040 + THE1C LTR MaLR 1 373 -2 851 207 113 35 chr11 35257674 35257703 -113525769 + L1MC4 LINE L1 6805 6830 -1212 4573 106 36 2 chr11 35257703 35258316 -113525156 - MER51A LTR ERV1 0 634 1 851 207 113 35 chr11 35258316 35258542 -113524930 + L1MC4 LINE L1 6830 7080 -962 2371 70 3 0 chr11 35258562 35258846 -113524626 + AluSp SINE Alu 1 285 -28 2273 114 7 0 chr11 35259130 35259436 -113524036 - AluSg SINE Alu -2 308 1 1289 39 0 6 chr11 35259780 35259936 -113523536 + AluY SINE Alu 131 285 -26 1450 83 5 0 chr11 35259963 35260155 -113523317 + AluY SINE Alu 119 311 0 798 169 0 8 chr11 35260267 35260391 -113523081 - MER2 DNA MER2_type -221 124 2 353 226 284 0 chr11 35260396 35260498 -113522974 + MIR SINE MIR 82 212 -50 1957 150 0 3 chr11 35261298 35261592 -113521880 + AluJb SINE Alu 1 293 -19 424 231 94 147 chr11 35261829 35262149 -113521323 - MLT1J LTR MaLR -4 507 205 364 300 127 17 chr11 35262272 35262509 -113520963 - MLT1L LTR MaLR -113 502 240 225 211 29 115 chr11 35262547 35262651 -113520821 - MLT1L LTR MaLR -482 133 39 183 278 153 56 chr11 35262654 35262798 -113520674 + MIR SINE MIR 35 192 -70 335 306 35 0 chr11 35263500 35263585 -113519887 + MIR SINE MIR 30 117 -91 739 275 130 43 chr11 35263658 35264120 -113519352 - MLT1J LTR MaLR -2 509 8 451 170 10 60 chr11 35266093 35266193 -113517279 + MER5B DNA MER1_type 1 95 -83 530 284 77 64 chr11 35267796 35268123 -113515349 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 35268176 35268453 -113515019 + MLT1F1 LTR MaLR 2 292 -250 2112 191 35 76 chr11 35268468 35269048 -113514424 - MER34B LTR ERV1 -5 560 5 1089 160 66 19 chr11 35269052 35269265 -113514207 + MLT1F1 LTR MaLR 343 565 -2 351 188 12 71 chr11 35269288 35269373 -113514099 + MIR3 SINE MIR 77 156 -52 302 292 29 36 chr11 35270348 35270485 -113512987 + MIR SINE MIR 96 231 -31 661 268 98 38 chr11 35270517 35270752 -113512720 + MIR SINE MIR 14 262 0 28 0 0 0 chr11 35271236 35271264 -113512208 + AT_rich Low_complexity Low_complexity 1 28 0 5198 89 12 6 chr11 35271274 35271937 -113511535 - PABL_B LTR ERV1 0 667 1 582 180 54 0 chr11 35271959 35272070 -113511402 - Tigger7 DNA MER2_type 0 2487 2371 203 200 0 18 chr11 35272070 35272125 -113511347 + (CATA)n Simple_repeat Simple_repeat 4 57 0 521 283 65 22 chr11 35272315 35272700 -113510772 + L2 LINE L2 2595 3059 -213 234 93 0 47 chr11 35273660 35273703 -113509769 - MADE1 DNA Mariner -37 43 3 364 217 30 153 chr11 35273753 35273956 -113509516 - MIR SINE MIR -78 184 7 671 242 82 10 chr11 35274565 35274783 -113508689 + L1ME3A LINE L1 5933 6163 -1 514 277 29 0 chr11 35274824 35274961 -113508511 - MIR3 SINE MIR -33 175 35 717 279 141 10 chr11 35275080 35275436 -113508036 - L2 LINE L2 -681 2633 2163 523 203 31 47 chr11 35275437 35275565 -113507907 + MER106A DNA MER1_type 111 236 0 203 315 144 0 chr11 35275566 35275677 -113507795 - L2 LINE L2 -1477 1837 1711 765 288 9 35 chr11 35275718 35275944 -113507528 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 35276001 35276057 -113507415 + (TA)n Simple_repeat Simple_repeat 2 58 0 333 0 0 0 chr11 35276059 35276096 -113507376 + (CA)n Simple_repeat Simple_repeat 2 38 0 621 276 76 13 chr11 35276734 35276959 -113506513 + MIR SINE MIR 13 251 -11 1450 168 29 29 chr11 35277789 35278069 -113505403 + MER7A DNA MER2_type 1 278 -68 350 349 33 7 chr11 35278168 35278320 -113505152 - MER5A DNA MER1_type 0 189 34 232 194 45 60 chr11 35278320 35278387 -113505085 - MER34 LTR ERV1 -4 538 473 5173 191 40 43 chr11 35278390 35279782 -113503690 + L1M1 LINE L1 16 2059 -5506 1006 260 83 67 chr11 35279899 35280419 -113503053 - L1MC4a LINE L1 -745 5555 5297 722 253 176 41 chr11 35280580 35280944 -113502528 - MLT1J2 LTR MaLR 0 450 34 243 0 0 0 chr11 35281594 35281621 -113501851 + (GA)n Simple_repeat Simple_repeat 1 27 0 908 113 20 53 chr11 35282219 35282260 -113501212 - MSTA LTR MaLR 0 428 387 2869 16 0 0 chr11 35282260 35282573 -113500899 + AluYb8 SINE Alu 1 313 -5 908 113 20 53 chr11 35282573 35282682 -113500790 - MSTA LTR MaLR -41 387 283 243 189 0 0 chr11 35283683 35283736 -113499736 + (ATG)n Simple_repeat Simple_repeat 1 53 0 230 262 95 32 chr11 35284278 35284404 -113499068 - MIR SINE MIR -10 252 119 213 290 22 91 chr11 35285156 35285327 -113498145 - MIR SINE MIR -70 138 34 665 163 0 0 chr11 35285539 35285637 -113497835 - AluSg/x SINE Alu -14 295 198 572 216 78 130 chr11 35285737 35285865 -113497607 + L1MC4 LINE L1 7267 7400 -642 2056 116 7 0 chr11 35285865 35286150 -113497322 - AluSx SINE Alu -25 287 1 572 216 78 130 chr11 35286150 35286190 -113497282 + L1MC4 LINE L1 7400 7441 -601 2705 209 46 60 chr11 35286190 35286804 -113496668 - MER77 LTR ERV1 0 605 1 572 216 78 130 chr11 35286804 35287004 -113496468 + L1MC4 LINE L1 7441 7617 -425 351 194 0 0 chr11 35287029 35287102 -113496370 - L1MB3 LINE L1 -202 5969 5897 822 195 7 66 chr11 35287238 35287510 -113495962 - L1MB2 LINE L1 -282 5887 5660 633 138 4 8 chr11 35287517 35287750 -113495722 + AluJb SINE Alu 6 307 -5 1851 172 32 130 chr11 35287751 35288109 -113495363 - L1MB2 LINE L1 -499 5672 5388 2197 117 0 0 chr11 35288109 35288407 -113495065 - AluSx SINE Alu -14 298 1 1851 172 32 130 chr11 35288407 35288647 -113494825 - L1MB2 LINE L1 -783 5388 5126 700 216 0 0 chr11 35288648 35288773 -113494699 - FLAM_C SINE Alu -12 131 7 981 160 27 5 chr11 35288773 35288960 -113494512 - L1MB2 LINE L1 -1005 5141 4951 2169 135 0 0 chr11 35288987 35289291 -113494181 - AluSx SINE Alu -8 304 1 2023 156 0 0 chr11 35290388 35290690 -113492782 - AluSx SINE Alu -10 302 1 2055 93 0 0 chr11 35290820 35291089 -113492383 - AluSx SINE Alu -5 307 39 225 0 0 0 chr11 35292985 35293010 -113490462 + (T)n Simple_repeat Simple_repeat 1 25 0 2199 82 3 17 chr11 35293172 35293484 -113489988 - AluY SINE Alu 0 311 1 1147 214 15 34 chr11 35293642 35293904 -113489568 + MIR SINE MIR 1 257 -5 209 309 0 0 chr11 35294055 35294110 -113489362 + (CTGGGG)n Simple_repeat Simple_repeat 4 58 0 1805 153 36 4 chr11 35294588 35294863 -113488609 - AluJb SINE Alu -26 286 3 1950 145 3 0 chr11 35294995 35295284 -113488188 - AluSx SINE Alu -22 290 1 402 294 21 7 chr11 35295575 35295718 -113487754 + L1MC4a LINE L1 5768 5912 -1896 2707 127 18 48 chr11 35295748 35296100 -113487372 - MSTC LTR MaLR 0 428 90 2260 101 10 0 chr11 35296100 35296398 -113487074 + AluSg SINE Alu 1 301 -9 2707 127 18 48 chr11 35296398 35296486 -113486986 - MSTC LTR MaLR -338 90 1 946 244 5 0 chr11 35297410 35297619 -113485853 - AluJb SINE Alu -102 210 1 2028 145 0 0 chr11 35297640 35297950 -113485522 - AluSx SINE Alu 0 310 1 940 140 86 53 chr11 35298328 35298738 -113484734 - LTR54B LTR ERV1 -4 494 1 2122 117 13 0 chr11 35298939 35299246 -113484226 + AluSq SINE Alu 1 311 -2 207 100 0 0 chr11 35299365 35299395 -113484077 + (T)n Simple_repeat Simple_repeat 1 30 0 186 353 24 24 chr11 35299509 35299594 -113483878 - MIR3 SINE MIR -8 200 116 23 55 0 18 chr11 35300189 35300227 -113483245 + AT_rich Low_complexity Low_complexity 1 39 -15 2327 114 0 0 chr11 35300227 35300534 -113482938 + AluSq SINE Alu 1 307 -6 23 55 0 18 chr11 35300534 35300550 -113482922 + AT_rich Low_complexity Low_complexity 39 54 0 648 35 59 12 chr11 35300550 35300635 -113482837 - HY3 scRNA scRNA -1 100 12 205 171 0 0 chr11 35300776 35300811 -113482661 - MIR SINE MIR -61 147 113 358 250 180 7 chr11 35300821 35300962 -113482510 + MLT1J LTR MaLR 15 218 -286 1941 110 3 66 chr11 35300967 35301285 -113482187 + AluSg1 SINE Alu 1 298 -11 525 257 151 0 chr11 35301414 35301566 -113481906 + MER5A DNA MER1_type 15 189 0 935 157 70 91 chr11 35301666 35301826 -113481646 - L1MB3 LINE L1 -2 6181 6019 192 40 0 0 chr11 35301826 35301851 -113481621 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2155 93 0 4 chr11 35301851 35302131 -113481341 - AluSg SINE Alu -31 279 1 935 157 70 91 chr11 35302131 35302257 -113481215 - L1MB3 LINE L1 -162 6021 5902 888 266 105 53 chr11 35302260 35302621 -113480851 + LTR16A LTR ERVL 16 395 -55 4293 208 48 82 chr11 35302826 35303014 -113480458 - L1MB3 LINE L1 -743 5403 5210 1894 166 3 6 chr11 35303014 35303327 -113480145 - AluJb SINE Alu 0 312 1 4293 208 48 82 chr11 35303327 35303366 -113480106 - L1MB3 LINE L1 -936 5210 5171 2237 112 0 6 chr11 35303366 35303679 -113479793 - AluSq SINE Alu -2 311 1 4293 208 48 82 chr11 35303679 35303763 -113479709 - L1MB3 LINE L1 -975 5171 5086 2250 108 0 7 chr11 35303763 35304068 -113479404 - AluSx SINE Alu -9 303 1 4293 208 48 82 chr11 35304068 35304294 -113479178 - L1MB3 LINE L1 -1060 5086 4854 2106 126 13 0 chr11 35304294 35304595 -113478877 + AluSq SINE Alu 1 305 -8 4293 208 48 82 chr11 35304595 35304897 -113478575 - L1MB3 LINE L1 -1292 4854 4543 810 120 0 0 chr11 35304897 35305022 -113478450 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 1812 139 0 36 chr11 35305029 35305310 -113478162 - AluJo SINE Alu -30 282 12 4293 208 48 82 chr11 35305310 35305366 -113478106 - L1MB3 LINE L1 -1609 4537 4481 2450 144 19 14 chr11 35305366 35305507 -113477965 - L1MA9 LINE L1 -7 6305 6166 204 40 0 0 chr11 35305507 35305532 -113477940 + (TG)n Simple_repeat Simple_repeat 2 26 0 2450 144 19 14 chr11 35305532 35305806 -113477666 - L1MA9 LINE L1 -146 6166 5888 4293 208 48 82 chr11 35305806 35305922 -113477550 - L1MB3 LINE L1 -1665 4481 4363 2439 103 0 0 chr11 35305922 35306234 -113477238 + AluSx SINE Alu 1 312 0 4293 208 48 82 chr11 35306234 35306747 -113476725 - L1MB3 LINE L1 -1783 4363 4112 769 265 64 45 chr11 35306748 35307032 -113476440 + HERV16 LTR ERVL 2352 2629 -2367 2053 112 25 3 chr11 35307032 35307318 -113476154 - AluSx SINE Alu -20 292 1 769 265 64 45 chr11 35307318 35307514 -113475958 + HERV16 LTR ERVL 2629 2922 -2074 470 299 55 0 chr11 35307647 35307774 -113475698 - MIR SINE MIR -111 151 18 180 310 23 81 chr11 35307799 35307886 -113475586 - MIR SINE MIR -110 98 17 2090 151 0 0 chr11 35307950 35308255 -113475217 + AluSx SINE Alu 1 305 -7 540 260 101 18 chr11 35308280 35308449 -113475023 + MIR SINE MIR 16 198 -64 2123 112 0 11 chr11 35308646 35308933 -113474539 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr11 35309319 35309345 -113474127 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2164 106 0 3 chr11 35309352 35309635 -113473837 - AluSg SINE Alu -24 286 5 1528 178 96 7 chr11 35309651 35309921 -113473551 - AluJb SINE Alu -18 294 1 1585 165 204 91 chr11 35309922 35310382 -113473090 + MLT2B1 LTR ERVL 9 520 0 * 2039 268 105 0 chr11 35310382 35310965 -113472507 - MER20B DNA MER1_type -136 647 3 2258 95 3 0 chr11 35310987 35311283 -113472189 - AluSx SINE Alu -15 297 1 447 215 75 3 chr11 35311363 35311506 -113471966 - MIR SINE MIR -65 143 39 253 241 9 107 chr11 35312535 35312550 -113470922 + L2 LINE L2 3171 3186 -86 2110 140 10 0 chr11 35312550 35312850 -113470622 - AluSx SINE Alu -9 303 1 253 241 9 107 chr11 35312850 35312946 -113470526 + L2 LINE L2 3186 3271 -1 527 273 157 12 chr11 35313141 35313422 -113470050 + L1ME4a LINE L1 5491 5825 -296 2617 64 0 0 chr11 35313422 35313733 -113469739 - AluY SINE Alu 0 311 1 527 273 157 12 chr11 35313733 35313770 -113469702 + L1ME4a LINE L1 5825 5855 -266 3391 205 35 33 chr11 35313803 35313978 -113469494 + L1MB2 LINE L1 4465 4638 -1508 2370 89 0 32 chr11 35313978 35314291 -113469181 + AluSq SINE Alu 1 303 -10 3391 205 35 33 chr11 35314291 35314955 -113468517 + L1MB2 LINE L1 4638 5305 -841 906 179 0 6 chr11 35314958 35315114 -113468358 + AluJb SINE Alu 120 274 -38 4480 149 51 37 chr11 35315131 35315922 -113467550 + L1MB2 LINE L1 5310 6121 -50 1426 158 0 138 chr11 35315922 35316271 -113467201 + AluJo SINE Alu 1 301 -11 4480 149 51 37 chr11 35316271 35316321 -113467151 + L1MB2 LINE L1 6121 6169 -2 253 235 0 0 chr11 35316332 35316383 -113467089 + AluSp SINE Alu 120 170 -133 2467 71 0 7 chr11 35316385 35316693 -113466779 - AluY SINE Alu -5 306 1 1694 155 0 36 chr11 35316694 35316972 -113466500 + AluJb SINE Alu 28 295 -17 276 261 99 28 chr11 35316988 35317009 -113466463 + L1MC/D LINE L1 5710 5728 -2080 2039 113 24 0 chr11 35317009 35317301 -113466171 + AluSx SINE Alu 11 309 -3 276 261 99 28 chr11 35317301 35317421 -113466051 + L1MC/D LINE L1 5728 5861 -1947 1784 160 10 10 chr11 35317662 35317955 -113465517 - AluJb SINE Alu -15 297 5 23 0 0 0 chr11 35317958 35317981 -113465491 + AT_rich Low_complexity Low_complexity 1 23 0 738 119 0 0 chr11 35318083 35318210 -113465262 - AluSg/x SINE Alu 0 333 207 422 190 51 0 chr11 35318211 35318290 -113465182 - MSTB2 LTR MaLR -372 85 3 2120 232 47 85 chr11 35318719 35319227 -113464245 - L2 LINE L2 -72 3241 2715 1803 114 12 0 chr11 35319227 35319473 -113463999 - AluSx SINE Alu -19 293 45 2120 232 47 85 chr11 35319473 35319497 -113463975 - L2 LINE L2 -598 2715 2692 13396 24 0 0 chr11 35319497 35321729 -113461743 - L1PA3 LINE L1 -7 6148 3917 2120 232 47 85 chr11 35321729 35321755 -113461717 - L2 LINE L2 -621 2692 2667 1982 139 0 0 chr11 35321755 35322035 -113461437 + AluSx SINE Alu 1 280 -32 245 0 86 0 chr11 35322039 35322074 -113461398 + A-rich Low_complexity Low_complexity 1 38 0 2120 232 47 85 chr11 35322074 35322545 -113460927 - L2 LINE L2 -649 2664 2236 2106 122 3 3 chr11 35322554 35322850 -113460622 + AluSx SINE Alu 1 296 -16 2608 55 0 0 chr11 35322882 35323193 -113460279 + AluY SINE Alu 1 311 0 309 145 0 0 chr11 35323256 35323318 -113460154 + (ATG)n Simple_repeat Simple_repeat 1 62 0 228 245 39 26 chr11 35323451 35323606 -113459866 + (CAT)n Simple_repeat Simple_repeat 1 157 0 1204 134 2 1 chr11 35323838 35325166 -113458306 - ALR/Alpha Satellite centromeric 0 1329 1 2202 113 0 17 chr11 35325618 35325919 -113457553 - AluSx SINE Alu -14 298 3 404 306 125 23 chr11 35326332 35326548 -113456924 - L1ME LINE L1 -345 5776 5539 1910 164 7 0 chr11 35326723 35327016 -113456456 - AluSx SINE Alu -17 295 1 860 258 39 32 chr11 35327016 35327447 -113456025 - L1ME LINE L1 -584 5582 5052 408 104 0 0 chr11 35327591 35327658 -113455814 + (ATG)n Simple_repeat Simple_repeat 2 68 0 2497 65 0 0 chr11 35327658 35327951 -113455521 - AluSx SINE Alu -17 295 3 364 312 126 19 chr11 35328364 35328579 -113454893 - L1ME LINE L1 -345 5776 5539 2237 93 10 0 chr11 35328754 35329044 -113454428 - AluSg SINE Alu -17 293 1 1700 166 58 7 chr11 35329345 35329640 -113453832 + AluJo SINE Alu 1 310 -2 2349 110 0 0 chr11 35329767 35330068 -113453404 + AluSq SINE Alu 1 301 -12 869 125 0 8 chr11 35330231 35330351 -113453121 - FLAM_C SINE Alu -14 119 1 2249 103 13 3 chr11 35330968 35331268 -113452204 + AluSc SINE Alu 1 303 -6 1618 182 26 26 chr11 35331625 35331932 -113451540 - AluJo SINE Alu -5 307 1 2349 90 0 0 chr11 35331942 35332242 -113451230 - AluY SINE Alu -11 300 1 217 274 39 0 chr11 35332303 35332354 -113451118 + L2 LINE L2 3210 3262 -10 341 287 96 12 chr11 35332940 35333107 -113450365 + MIR SINE MIR 5 185 -77 784 152 170 6 chr11 35333123 35333288 -113450184 - AluSq SINE Alu -1 312 121 959 201 43 0 chr11 35333289 35333473 -113449999 - L1MC1 LINE L1 0 6333 6142 746 167 44 0 chr11 35333521 35333635 -113449837 + FLAM_C SINE Alu 2 120 -23 320 0 0 24 chr11 35333635 35333676 -113449796 + (CA)n Simple_repeat Simple_repeat 1 40 0 247 125 0 0 chr11 35333676 35333708 -113449764 + Alu SINE Alu 89 120 -182 275 0 0 28 chr11 35333708 35333744 -113449728 + (CA)n Simple_repeat Simple_repeat 1 35 0 235 73 0 73 chr11 35333744 35333770 -113449702 + Alu SINE Alu 92 116 -186 198 0 0 0 chr11 35333770 35333792 -113449680 + (CA)n Simple_repeat Simple_repeat 2 23 0 235 73 0 73 chr11 35333792 35333806 -113449666 + Alu SINE Alu 116 129 -173 714 206 0 0 chr11 35333814 35333945 -113449527 - FLAM_A SINE Alu -3 139 9 333 315 103 38 chr11 35334597 35334781 -113448691 - MIR SINE MIR -44 218 23 1953 188 134 35 chr11 35334897 35335441 -113448031 + L1MC4 LINE L1 7442 8039 -3 1261 192 121 11 chr11 35335635 35335916 -113447556 - AluJo SINE Alu 0 312 1 659 255 90 0 chr11 35335961 35336161 -113447311 + MIR SINE MIR 10 227 -35 2054 119 0 11 chr11 35336165 35336451 -113447021 + AluSx SINE Alu 1 283 -29 2141 102 7 0 chr11 35337036 35337319 -113446153 - AluSg SINE Alu -25 285 1 817 165 0 8 chr11 35337329 35337456 -113446016 - FLAM_C SINE Alu -16 127 2 257 331 114 46 chr11 35338160 35338335 -113445137 - L3 LINE CR1 -20 1557 1371 1704 154 13 10 chr11 35338335 35338633 -113444839 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr11 35338649 35338672 -113444800 + AT_rich Low_complexity Low_complexity 1 23 0 1899 129 39 4 chr11 35338786 35339066 -113444406 - AluSx SINE Alu -22 290 1 1397 181 58 24 chr11 35339069 35339361 -113444111 - AluJo SINE Alu -10 302 1 808 152 0 35 chr11 35340020 35340165 -113443307 - FLAM_C SINE Alu -3 140 1 497 191 351 0 chr11 35340211 35340379 -113443093 + MIR SINE MIR 9 235 -27 192 351 91 0 chr11 35340731 35340808 -113442664 + MIR3 SINE MIR 15 98 -110 389 231 111 0 chr11 35340809 35340926 -113442546 - MLT1H LTR MaLR 0 549 420 2211 88 7 3 chr11 35341023 35341306 -113442166 + AluSq SINE Alu 15 298 -15 1014 266 109 20 chr11 35341533 35342139 -113441333 - L2 LINE L2 -50 3263 2612 3697 234 157 26 chr11 35342139 35343522 -113439950 - L2 LINE L2 -479 2835 1272 2468 75 0 7 chr11 35343786 35344093 -113439379 - AluY SINE Alu -6 305 1 2084 132 0 0 chr11 35344351 35344640 -113438832 + AluSx SINE Alu 14 302 -10 1710 127 27 48 chr11 35344819 35345031 -113438441 + L1MB8 LINE L1 5702 5907 -271 2102 108 3 7 chr11 35345031 35345337 -113438135 - AluSx SINE Alu 0 305 1 1710 127 27 48 chr11 35345337 35345454 -113438018 + L1MB8 LINE L1 5907 6025 -153 1028 308 64 38 chr11 35346302 35346754 -113436718 + LTR16B LTR ERVL 1 464 0 198 313 131 20 chr11 35347472 35347571 -113435901 - L2 LINE L2 -4 3309 3200 565 200 296 0 chr11 35348005 35348140 -113435332 - MER5B DNA MER1_type -3 175 1 1895 219 90 17 chr11 35348215 35348466 -113435006 + L1MC4 LINE L1 6718 6949 -1093 1747 164 3 33 chr11 35348466 35348770 -113434702 - AluJo SINE Alu -12 300 6 1895 219 90 17 chr11 35348770 35349531 -113433941 + L1MC4 LINE L1 6949 8041 -1 537 287 0 38 chr11 35351793 35351950 -113431522 - MIR3 SINE MIR -18 190 40 2414 95 0 0 chr11 35352116 35352421 -113431051 - AluSg SINE Alu -5 305 1 2086 154 3 0 chr11 35352666 35352977 -113430495 - AluSx SINE Alu 0 312 1 1748 153 7 24 chr11 35353179 35353473 -113429999 - AluJo SINE Alu -23 289 1 571 241 53 0 chr11 35353542 35353675 -113429797 - MIR SINE MIR -5 257 118 819 225 0 6 chr11 35353696 35353869 -113429603 - AluJo SINE Alu -20 292 121 196 337 54 11 chr11 35353889 35353981 -113429491 - L3b LINE CR1 -369 1214 1119 324 102 0 0 chr11 35354259 35354308 -113429164 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2242 136 95 3 chr11 35354566 35354956 -113428516 - MSTB LTR MaLR 0 426 1 194 0 39 0 chr11 35355468 35355494 -113427978 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 475 312 35 69 chr11 35355909 35356140 -113427332 - L2 LINE L2 -62 3210 2988 1415 94 80 0 chr11 35356341 35356554 -113426918 + MER30 DNA MER1_type 1 230 0 579 301 235 26 chr11 35356673 35357561 -113425911 - L2 LINE L2 -657 2657 1584 977 298 69 16 chr11 35357717 35358080 -113425392 - L2 LINE L2 -12 3301 2920 300 354 113 40 chr11 35358253 35358812 -113424660 + L2 LINE L2 2626 3231 -41 2180 110 0 16 chr11 35359133 35359450 -113424022 - AluSx SINE Alu 0 312 1 2350 113 0 0 chr11 35359456 35359766 -113423706 - AluSg SINE Alu 0 310 1 2368 77 0 0 chr11 35360041 35360326 -113423146 - AluSc SINE Alu -24 285 1 379 221 76 35 chr11 35361402 35361547 -113421925 - MIR SINE MIR -109 153 3 1799 145 26 23 chr11 35361867 35362170 -113421302 - AluJb SINE Alu -8 304 1 2155 129 0 10 chr11 35363612 35363922 -113419550 + AluSx SINE Alu 1 307 -5 2062 82 42 49 chr11 35364334 35364640 -113418832 - AluSp SINE Alu -9 304 1 277 372 115 0 chr11 35364877 35365025 -113418447 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 35365042 35365085 -113418387 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 142 3 0 chr11 35365086 35365374 -113418098 - AluSx SINE Alu -23 289 1 357 240 134 39 chr11 35365830 35366009 -113417463 - L1MC4 LINE L1 -15 8027 7832 21 36 0 0 chr11 35366878 35366906 -113416566 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 35367789 35367812 -113415660 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 38 7 chr11 35368701 35368988 -113414484 + AluJo SINE Alu 1 296 -16 1797 160 0 7 chr11 35371235 35371540 -113411932 - AluJb SINE Alu 0 308 6 1866 136 14 7 chr11 35371579 35371859 -113411613 - AluSx SINE Alu -30 282 1 1809 151 0 25 chr11 35372184 35372468 -113411004 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 35372470 35372508 -113410964 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 35372685 35372764 -113410708 + (TA)n Simple_repeat Simple_repeat 2 82 0 367 284 151 46 chr11 35374396 35374614 -113408858 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 35374614 35374690 -113408782 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 35377610 35377660 -113405812 + AT_rich Low_complexity Low_complexity 1 50 0 435 320 47 0 chr11 35378901 35379051 -113404421 - MIR SINE MIR -59 203 47 1234 219 134 19 chr11 35379456 35379866 -113403606 - L1ME3A LINE L1 -264 5906 5450 193 194 0 0 chr11 35380100 35380131 -113403341 + L2 LINE L2 3214 3244 -28 599 281 257 16 chr11 35380139 35380725 -113402747 - L2 LINE L2 -6 3307 2594 888 221 29 0 chr11 35380759 35381003 -113402469 - L1ME3A LINE L1 -918 5228 4978 470 278 67 93 chr11 35381422 35381565 -113401907 - L1MC4 LINE L1 0 8042 7897 2206 102 3 0 chr11 35381565 35381850 -113401622 - AluSx SINE Alu -26 286 1 470 278 67 93 chr11 35381850 35382167 -113401305 - L1MC4 LINE L1 -145 7897 7594 2311 96 0 0 chr11 35382180 35382472 -113401000 - AluSx SINE Alu -9 303 12 770 234 203 48 chr11 35382694 35383113 -113400359 - L1MC4 LINE L1 -749 7293 6810 235 350 73 8 chr11 35383708 35383831 -113399641 + L2 LINE L2 3183 3313 0 237 339 110 18 chr11 35383851 35383960 -113399512 + MIR SINE MIR 31 149 -59 295 270 149 42 chr11 35383963 35384261 -113399211 - MER102a DNA MER1_type -2 328 7 862 204 0 25 chr11 35384462 35384624 -113398848 - FRAM SINE Alu -8 158 1 2556 49 0 3 chr11 35384636 35385126 -113398346 - AluY SINE Alu 0 489 1 297 293 28 47 chr11 35385433 35385539 -113397933 - MIR SINE MIR -78 184 81 2064 99 0 25 chr11 35385544 35385828 -113397644 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 35385828 35385865 -113397607 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2076 205 61 85 chr11 35385956 35386236 -113397236 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 35386236 35386285 -113397187 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 2076 205 61 85 chr11 35386285 35386925 -113396547 + MER63D DNA MER1_type 293 906 -155 5336 174 30 9 chr11 35386931 35387983 -113395489 - Tigger6a DNA MER2_type -7 1076 3 774 176 27 0 chr11 35387989 35388137 -113395335 + MER63D DNA MER1_type 909 1060 0 521 295 15 80 chr11 35388464 35388803 -113394669 - MLT1I LTR MaLR -19 390 99 748 159 7 29 chr11 35388859 35388997 -113394475 + MER2 DNA MER2_type 1 135 -210 1636 150 11 28 chr11 35388998 35389284 -113394188 + AluJo SINE Alu 1 281 -31 486 49 0 0 chr11 35389287 35389348 -113394124 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1734 148 27 40 chr11 35389394 35389578 -113393894 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 35389578 35389607 -113393865 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1734 148 27 40 chr11 35389607 35389720 -113393752 - AluJb SINE Alu -198 114 1 587 196 119 26 chr11 35389721 35389915 -113393557 + MER2 DNA MER2_type 126 337 -8 317 165 44 121 chr11 35390106 35390171 -113393301 + MER5A DNA MER1_type 9 68 -121 2111 113 0 3 chr11 35390171 35390486 -113392986 + AluSx SINE Alu 1 314 0 317 165 44 121 chr11 35390486 35390510 -113392962 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 35390535 35390633 -113392839 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 35390889 35390989 -113392483 + CT-rich Low_complexity Low_complexity 2 106 0 660 181 39 0 chr11 35391451 35391578 -113391894 - FLAM_C SINE Alu 0 133 2 1742 185 68 7 chr11 35391599 35392010 -113391462 - L1MB8 LINE L1 -101 6077 5642 185 312 67 0 chr11 35392072 35392133 -113391339 - MIR SINE MIR -100 108 43 2186 106 0 0 chr11 35392390 35392692 -113390780 - AluSx SINE Alu 0 302 1 200 353 59 13 chr11 35392971 35393124 -113390348 + L2 LINE L2 2606 2765 -549 2273 92 3 0 chr11 35393500 35393794 -113389678 - AluSx SINE Alu -17 295 1 769 305 64 17 chr11 35394226 35394462 -113389010 - MIR SINE MIR -4 258 12 2320 101 0 19 chr11 35394916 35395232 -113388240 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 35396170 35396208 -113387264 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2250 97 7 0 chr11 35396210 35396498 -113386974 - AluSx SINE Alu -22 290 1 1085 234 164 15 chr11 35396716 35397105 -113386367 + L2 LINE L2 2863 3309 -4 302 290 28 19 chr11 35397111 35397218 -113386254 + L2 LINE L2 3158 3265 -7 208 258 48 16 chr11 35397389 35397451 -113386021 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 35397786 35397855 -113385617 + GC_rich Low_complexity Low_complexity 1 69 0 365 288 88 125 chr11 35398133 35398488 -113384984 - L1M2 LINE L1 -5519 1330 942 27 29 0 0 chr11 35398488 35398522 -113384950 + GC_rich Low_complexity Low_complexity 1 34 0 365 288 88 125 chr11 35398522 35398773 -113384699 - L1M2 LINE L1 -5907 942 683 237 158 18 35 chr11 35401384 35401441 -113382031 - L2 LINE L2 0 3272 3217 740 203 6 25 chr11 35401452 35401615 -113381857 + MIR SINE MIR 93 252 -10 205 232 36 0 chr11 35401645 35401701 -113381771 - L2 LINE L2 -26 3246 3189 1804 167 17 53 chr11 35402218 35402577 -113380895 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 35402701 35402732 -113380740 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 468 294 156 12 chr11 35402857 35403017 -113380455 - MER5A DNA MER1_type 0 189 7 2890 260 106 13 chr11 35403026 35404350 -113379122 - L2 LINE L2 -141 3172 1719 351 333 17 0 chr11 35405334 35405451 -113378021 - L2 LINE L2 -4 3268 3150 488 261 110 23 chr11 35405484 35405724 -113377748 - Charlie8 DNA MER1_type -1032 1385 36 4577 192 85 34 chr11 35405765 35407125 -113376347 - L1ME1 LINE L1 -5 6161 4649 1044 201 33 9 chr11 35407125 35407339 -113376133 - MER20 DNA MER1_type 0 219 1 4577 192 85 34 chr11 35407339 35408149 -113375323 - L1ME1 LINE L1 -1517 4649 3881 2224 113 0 7 chr11 35408193 35408486 -113374986 + AluSq SINE Alu 1 291 -22 383 237 90 45 chr11 35408507 35408619 -113374853 - L1ME1 LINE L1 -2403 3743 3618 2030 145 0 0 chr11 35408619 35408933 -113374539 + AluSx SINE Alu 1 314 0 383 237 90 45 chr11 35408933 35408996 -113374476 - L1ME1 LINE L1 -2528 3618 3559 2188 139 0 0 chr11 35409097 35409400 -113374072 - AluSx SINE Alu -9 303 1 197 219 0 0 chr11 35409524 35409565 -113373907 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 35409801 35409842 -113373630 + AT_rich Low_complexity Low_complexity 1 41 0 2472 127 33 0 chr11 35409894 35410257 -113373215 - THE1C LTR MaLR 0 375 1 331 280 207 15 chr11 35460318 35460589 -113322883 - L2 LINE L2 -1408 1906 1584 977 298 69 16 chr11 35460745 35461108 -113322364 - L2 LINE L2 -12 3301 2920 300 354 113 40 chr11 35461281 35461840 -113321632 + L2 LINE L2 2626 3231 -41 2180 110 0 16 chr11 35462161 35462478 -113320994 - AluSx SINE Alu 0 312 1 2350 113 0 0 chr11 35462484 35462794 -113320678 - AluSg SINE Alu 0 310 1 2368 77 0 0 chr11 35463069 35463354 -113320118 - AluSc SINE Alu -24 285 1 379 221 76 35 chr11 35464429 35464574 -113318898 - MIR SINE MIR -109 153 3 1739 147 26 32 chr11 35464885 35465198 -113318274 - AluJb SINE Alu -1 311 1 1736 157 0 11 chr11 35466640 35466914 -113316558 + AluSx SINE Alu 1 271 -41 2062 82 42 49 chr11 35467296 35467602 -113315870 - AluSp SINE Alu -9 304 1 277 372 115 0 chr11 35467839 35467987 -113315485 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 35468004 35468047 -113315425 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 142 3 0 chr11 35468048 35468336 -113315136 - AluSx SINE Alu -23 289 1 357 240 134 39 chr11 35468792 35468971 -113314501 - L1MC4 LINE L1 -15 8027 7832 21 36 0 0 chr11 35469840 35469868 -113313604 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 35470752 35470775 -113312697 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 38 7 chr11 35471664 35471951 -113311521 + AluJo SINE Alu 1 296 -16 1797 160 0 7 chr11 35474198 35474503 -113308969 - AluJb SINE Alu 0 308 6 1866 136 14 7 chr11 35474542 35474822 -113308650 - AluSx SINE Alu -30 282 1 1809 151 0 25 chr11 35475376 35475660 -113307812 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 35475662 35475700 -113307772 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 35475877 35475956 -113307516 + (TA)n Simple_repeat Simple_repeat 2 82 0 367 284 151 46 chr11 35477588 35477806 -113305666 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 35477806 35477882 -113305590 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 35480895 35480945 -113302527 + AT_rich Low_complexity Low_complexity 1 50 0 435 320 47 0 chr11 35482318 35482468 -113301004 - MIR SINE MIR -59 203 47 1234 219 134 19 chr11 35482873 35483283 -113300189 - L1ME3A LINE L1 -264 5906 5450 193 194 0 0 chr11 35483517 35483548 -113299924 + L2 LINE L2 3214 3244 -28 599 281 257 16 chr11 35483556 35484142 -113299330 - L2 LINE L2 -6 3307 2594 888 221 29 0 chr11 35484176 35484420 -113299052 - L1ME3A LINE L1 -918 5228 4978 470 278 67 93 chr11 35484839 35484982 -113298490 - L1MC4 LINE L1 0 8042 7897 2206 102 3 0 chr11 35484982 35485267 -113298205 - AluSx SINE Alu -26 286 1 470 278 67 93 chr11 35485267 35485584 -113297888 - L1MC4 LINE L1 -145 7897 7594 2311 96 0 0 chr11 35485597 35485889 -113297583 - AluSx SINE Alu -9 303 12 770 234 203 48 chr11 35486111 35486530 -113296942 - L1MC4 LINE L1 -749 7293 6810 235 350 73 8 chr11 35487125 35487248 -113296224 + L2 LINE L2 3183 3313 0 237 339 110 18 chr11 35487268 35487377 -113296095 + MIR SINE MIR 31 149 -59 295 270 149 42 chr11 35487380 35487678 -113295794 - MER102a DNA MER1_type -2 328 7 862 204 0 25 chr11 35487879 35488041 -113295431 - FRAM SINE Alu -8 158 1 2556 49 0 3 chr11 35488053 35488543 -113294929 - AluY SINE Alu 0 489 1 297 293 28 47 chr11 35488850 35488956 -113294516 - MIR SINE MIR -78 184 81 2064 99 0 25 chr11 35488961 35489245 -113294227 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 35489245 35489282 -113294190 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1936 212 61 85 chr11 35489373 35489653 -113293819 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 35489653 35489702 -113293770 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 1936 212 61 85 chr11 35489702 35490342 -113293130 + MER63D DNA MER1_type 293 906 -155 5336 174 30 9 chr11 35490348 35491400 -113292072 - Tigger6a DNA MER2_type -7 1076 3 774 176 27 0 chr11 35491406 35491554 -113291918 + MER63D DNA MER1_type 911 1062 0 521 295 15 80 chr11 35491881 35492220 -113291252 - MLT1I LTR MaLR -19 390 99 748 159 7 29 chr11 35492276 35492414 -113291058 + MER2 DNA MER2_type 1 135 -210 877 178 11 43 chr11 35492415 35492600 -113290872 + AluJo SINE Alu 1 179 -133 486 49 0 0 chr11 35492735 35492796 -113290676 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1734 148 27 40 chr11 35492842 35493026 -113290446 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 35493026 35493055 -113290417 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1734 148 27 40 chr11 35493055 35493168 -113290304 - AluJb SINE Alu -198 114 1 587 196 119 26 chr11 35493169 35493363 -113290109 + MER2 DNA MER2_type 126 337 -8 317 165 44 121 chr11 35493553 35493618 -113289854 + MER5A DNA MER1_type 9 68 -121 2111 113 0 3 chr11 35493618 35493933 -113289539 + AluSx SINE Alu 1 314 0 317 165 44 121 chr11 35493933 35493957 -113289515 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 35493982 35494080 -113289392 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 35494336 35494436 -113289036 + CT-rich Low_complexity Low_complexity 2 106 0 660 181 39 0 chr11 35494897 35495024 -113288448 - FLAM_C SINE Alu 0 133 2 1742 185 68 7 chr11 35495045 35495456 -113288016 - L1MB8 LINE L1 -101 6077 5642 185 312 67 0 chr11 35495518 35495579 -113287893 - MIR SINE MIR -100 108 43 2186 106 0 0 chr11 35495836 35496138 -113287334 - AluSx SINE Alu 0 302 1 200 353 59 13 chr11 35496417 35496570 -113286902 + L2 LINE L2 2606 2765 -549 2273 92 3 0 chr11 35496946 35497240 -113286232 - AluSx SINE Alu -17 295 1 769 305 64 17 chr11 35497672 35497908 -113285564 - MIR SINE MIR -4 258 12 2320 101 0 19 chr11 35498362 35498678 -113284794 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 35499616 35499654 -113283818 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2250 97 7 0 chr11 35499656 35499944 -113283528 - AluSx SINE Alu -22 290 1 1085 234 164 15 chr11 35500162 35500551 -113282921 + L2 LINE L2 2863 3309 -4 302 290 28 19 chr11 35500557 35500664 -113282808 + L2 LINE L2 3158 3265 -7 208 258 48 16 chr11 35500835 35500897 -113282575 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 35501232 35501301 -113282171 + GC_rich Low_complexity Low_complexity 1 69 0 28 29 0 0 chr11 35501563 35501598 -113281874 + GC_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 35501934 35501968 -113281504 + GC_rich Low_complexity Low_complexity 1 34 0 237 158 18 35 chr11 35504830 35504887 -113278585 - L2 LINE L2 0 3272 3217 740 203 6 25 chr11 35504898 35505061 -113278411 + MIR SINE MIR 93 252 -10 205 232 36 0 chr11 35505091 35505147 -113278325 - L2 LINE L2 -26 3246 3189 1804 167 17 53 chr11 35505664 35506023 -113277449 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 35506147 35506178 -113277294 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 468 294 156 12 chr11 35506303 35506463 -113277009 - MER5A DNA MER1_type 0 189 7 2890 260 106 13 chr11 35506472 35507796 -113275676 - L2 LINE L2 -141 3172 1719 351 333 17 0 chr11 35508780 35508897 -113274575 - L2 LINE L2 -4 3268 3150 488 261 110 23 chr11 35508930 35509170 -113274302 - Charlie8 DNA MER1_type -1021 1396 36 4567 193 85 34 chr11 35509211 35510571 -113272901 - L1ME1 LINE L1 -5 6161 4649 1044 201 33 9 chr11 35510571 35510785 -113272687 - MER20 DNA MER1_type 0 219 1 4567 193 85 34 chr11 35510785 35511595 -113271877 - L1ME1 LINE L1 -1517 4649 3881 2224 113 0 7 chr11 35511639 35511932 -113271540 + AluSq SINE Alu 1 291 -22 383 237 90 45 chr11 35511953 35512065 -113271407 - L1ME1 LINE L1 -2403 3743 3618 2030 145 0 0 chr11 35512065 35512379 -113271093 + AluSx SINE Alu 1 314 0 383 237 90 45 chr11 35512379 35512442 -113271030 - L1ME1 LINE L1 -2528 3618 3559 2188 139 0 0 chr11 35512543 35512846 -113270626 - AluSx SINE Alu -9 303 1 197 219 0 0 chr11 35512970 35513011 -113270461 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 35513247 35513288 -113270184 + AT_rich Low_complexity Low_complexity 1 41 0 2472 127 33 0 chr11 35513340 35513703 -113269769 - THE1C LTR MaLR 0 375 1 772 242 15 25 chr11 35515283 35515481 -113267991 - MIR SINE MIR -46 216 21 594 175 101 17 chr11 35516008 35516165 -113267307 + MER63A DNA MER1_type 40 210 0 343 297 96 50 chr11 35517187 35517406 -113266066 - MIR SINE MIR 0 262 34 376 231 92 51 chr11 35517458 35517653 -113265819 - L1MC4 LINE L1 -1 8041 7839 678 197 13 112 chr11 35517704 35517937 -113265535 - L1ME2 LINE L1 -11 6153 5944 567 153 0 0 chr11 35518020 35518105 -113265367 - AluJ/FLAM SINE Alu -227 85 1 239 267 58 0 chr11 35518211 35518297 -113265175 + L2 LINE L2 2625 2715 -599 363 278 90 65 chr11 35518424 35518669 -113264803 + L2 LINE L2 2925 3175 -97 1561 184 37 0 chr11 35519330 35519451 -113264021 + AluJb SINE Alu 1 116 -216 183 42 0 0 chr11 35519451 35519475 -113263997 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1561 184 37 0 chr11 35519475 35519675 -113263797 + AluJb SINE Alu 116 332 0 643 264 81 25 chr11 35519700 35519897 -113263575 + MER102a DNA MER1_type 87 294 -36 937 269 110 18 chr11 35519903 35520286 -113263186 - MLT1J2 LTR MaLR -18 432 15 253 226 97 0 chr11 35520290 35520352 -113263120 + MER102a DNA MER1_type 263 330 0 502 189 126 0 chr11 35520399 35520510 -113262962 + L2 LINE L2 3189 3313 0 364 91 0 0 chr11 35520809 35520864 -113262608 - L1PB1 LINE L1 -1 6150 6096 1923 128 8 0 chr11 35521939 35522205 -113261267 + AluSx SINE Alu 31 298 -14 2169 124 0 10 chr11 35522346 35522645 -113260827 + AluSg SINE Alu 1 296 -14 2343 60 0 11 chr11 35522724 35523006 -113260466 + AluSg SINE Alu 1 279 -31 414 0 0 0 chr11 35523006 35523052 -113260420 + (CA)n Simple_repeat Simple_repeat 1 46 0 2252 105 16 0 chr11 35523213 35523517 -113259955 - AluSq SINE Alu -4 309 1 301 239 65 11 chr11 35523612 35523704 -113259768 + MER5C DNA MER1_type 28 124 -200 2317 116 0 0 chr11 35524246 35524548 -113258924 - AluSx SINE Alu -10 302 1 22 35 0 0 chr11 35525358 35525387 -113258085 + AT_rich Low_complexity Low_complexity 1 29 0 590 273 29 19 chr11 35526065 35526270 -113257202 - MIR SINE MIR -21 241 35 325 114 57 21 chr11 35526483 35526623 -113256849 + (TA)n Simple_repeat Simple_repeat 1 145 0 30 45 0 0 chr11 35526643 35526687 -113256785 + AT_rich Low_complexity Low_complexity 1 44 0 1245 158 200 0 chr11 35526866 35527106 -113256366 - AluJb SINE Alu -10 292 5 274 288 174 0 chr11 35527171 35527303 -113256169 - MER102a DNA MER1_type 0 330 176 303 159 48 0 chr11 35527478 35527541 -113255931 - L1M LINE L1 -824 5350 5285 835 227 160 7 chr11 35527541 35527841 -113255631 + L2 LINE L2 1821 2166 -1148 686 241 121 31 chr11 35527857 35528147 -113255325 + L2 LINE L2 2420 2735 -579 543 162 0 0 chr11 35528150 35528249 -113255223 + CT-rich Low_complexity Low_complexity 4 102 0 260 167 33 0 chr11 35528265 35528325 -113255147 + MER103 DNA DNA 83 144 -22 511 138 0 11 chr11 35528327 35528421 -113255051 + (TCCC)n Simple_repeat Simple_repeat 2 94 0 374 284 0 9 chr11 35528897 35529006 -113254466 + L2 LINE L2 3160 3267 -5 4801 109 104 140 chr11 35529006 35530452 -113253020 - pTR5 LTR ERV1 0 2438 66 357 19 0 0 chr11 35530585 35530642 -113252830 - L1P LINE L1 -844 5302 5246 6484 64 11 22 chr11 35530766 35532216 -113251256 + L1PA8A LINE L1 4680 6123 -8 2067 109 7 0 chr11 35532335 35532611 -113250861 + THE1B LTR MaLR 87 364 0 2979 64 5 47 chr11 35532657 35533064 -113250408 - HERVL LTR ERVL -2495 3159 2770 246 225 175 0 chr11 35533778 35533858 -113249614 - MIR SINE MIR -10 252 159 273 149 0 21 chr11 35533864 35533902 -113249570 - MLT2D LTR ERVL -2 412 374 630 71 0 0 chr11 35533902 35533986 -113249486 + (TA)n Simple_repeat Simple_repeat 2 85 0 1336 187 90 25 chr11 35534037 35534358 -113249114 - MER2 DNA MER2_type 0 344 3 1120 207 64 44 chr11 35534378 35534766 -113248706 - MLT2B1 LTR ERVL -40 480 1 426 273 28 14 chr11 35534766 35534909 -113248563 - MIR SINE MIR -99 163 19 294 209 11 77 chr11 35534973 35535064 -113248408 - MIR SINE MIR -94 114 30 389 296 181 10 chr11 35535600 35535799 -113247673 + MIR SINE MIR 28 260 -2 21 0 0 0 chr11 35536990 35537011 -113246461 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 35537064 35537084 -113246388 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1827 138 63 8 chr11 35537086 35537354 -113246118 - AluSx SINE Alu -29 283 1 512 287 80 34 chr11 35537364 35537398 -113246074 - L1MEc LINE L1 -3875 2846 2815 831 118 25 103 chr11 35537398 35537533 -113245939 - L1MA4A LINE L1 -1 6302 6187 2297 67 22 29 chr11 35537533 35537846 -113245626 - AluY SINE Alu 0 311 1 831 118 25 103 chr11 35537846 35537913 -113245559 - L1MA4A LINE L1 -116 6187 6116 512 287 80 34 chr11 35537913 35538260 -113245212 - L1MEc LINE L1 -3906 2815 2436 2891 10 0 3 chr11 35538260 35538572 -113244900 - AluYa5 SINE Alu 0 311 1 512 287 80 34 chr11 35538572 35538666 -113244806 - L1MEc LINE L1 -4285 2436 2348 349 241 41 77 chr11 35538892 35539062 -113244410 - L1MEc LINE L1 -4517 2023 1860 953 35 0 0 chr11 35539062 35539177 -113244295 - L1PA4 LINE L1 0 6155 6041 495 227 0 0 chr11 35539278 35539497 -113243975 + (CA)n Simple_repeat Simple_repeat 1 219 0 410 228 0 6 chr11 35539512 35539692 -113243780 + (CA)n Simple_repeat Simple_repeat 2 180 0 204 214 54 0 chr11 35539741 35539797 -113243675 + CT-rich Low_complexity Low_complexity 3 61 0 350 228 54 11 chr11 35539806 35539898 -113243574 + MER112 DNA MER1_type 163 258 -2 2170 119 3 10 chr11 35540308 35540620 -113242852 + AluSx SINE Alu 1 310 -2 2387 74 10 3 chr11 35540793 35541091 -113242381 + AluSx SINE Alu 1 300 -12 2289 95 7 3 chr11 35541629 35541933 -113241539 + AluSc SINE Alu 3 307 -2 2345 34 0 0 chr11 35543137 35543402 -113240070 - AluY SINE Alu -1 310 46 2138 108 7 23 chr11 35543407 35543712 -113239760 - AluSx SINE Alu -12 300 1 231 167 19 0 chr11 35544536 35544590 -113238882 + LTR66 LTR ERVL 385 439 -171 1701 111 0 53 chr11 35544773 35545035 -113238437 + AluSx SINE Alu 57 304 -8 185 300 0 44 chr11 35546146 35546236 -113237236 - MIR3 SINE MIR -15 193 108 426 276 55 39 chr11 35546255 35546451 -113237021 + MIR SINE MIR 11 203 -59 233 313 45 15 chr11 35546775 35546909 -113236563 - L2 LINE L2 -241 3031 2894 223 291 48 56 chr11 35546921 35547172 -113236300 - L2 LINE L2 -1275 2039 1791 242 310 82 32 chr11 35547358 35547516 -113235956 - MER5B DNA MER1_type -2 176 11 647 256 93 0 chr11 35548871 35549043 -113234429 - MIR SINE MIR -72 190 3 398 257 43 14 chr11 35549182 35549322 -113234150 - MER103 DNA DNA -19 147 4 980 185 6 0 chr11 35549358 35549520 -113233952 + FRAM SINE Alu 1 163 -13 614 303 76 58 chr11 35550368 35550875 -113232597 - L1ME4a LINE L1 -260 5861 5361 202 290 32 0 chr11 35551283 35551345 -113232127 - L2 LINE L2 -1 3312 3249 605 78 0 206 chr11 35551862 35552003 -113231469 - AluSp/q SINE Alu -5 308 197 443 184 0 0 chr11 35552024 35552100 -113231372 + AluJb SINE Alu 205 280 -32 192 77 0 0 chr11 35552103 35552129 -113231343 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1338 142 5 0 chr11 35552570 35552774 -113230698 - MER2 DNA MER2_type -135 210 6 1167 181 10 5 chr11 35553065 35553269 -113230203 + MER3 DNA MER1_type 5 209 0 696 264 7 0 chr11 35553409 35553564 -113229908 + MER112 DNA MER1_type 96 251 -9 552 222 103 118 chr11 35553633 35553842 -113229630 + L2 LINE L2 2922 3124 -189 2120 127 10 3 chr11 35553842 35554142 -113229330 - AluSx SINE Alu -8 304 3 552 222 103 118 chr11 35554142 35554329 -113229143 + L2 LINE L2 3124 3312 -1 1974 194 20 45 chr11 35554555 35554951 -113228521 - MER70A LTR ERVL 0 472 87 1640 143 94 45 chr11 35554951 35555238 -113228234 - AluSx SINE Alu -11 301 1 2207 114 7 3 chr11 35555629 35555919 -113227553 + AluSx SINE Alu 1 291 -21 489 34 0 0 chr11 35555923 35555982 -113227490 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1899 166 23 0 chr11 35556290 35556592 -113226880 - AluJb SINE Alu -3 309 1 2471 205 14 34 chr11 35557914 35558479 -113224993 - L1MD3 LINE L1 -13 7982 7429 190 304 0 71 chr11 35559019 35559131 -113224341 - MIR SINE MIR -55 207 104 8472 115 22 19 chr11 35559522 35560165 -113223307 - HSMAR2 DNA Mariner -1 1301 662 1864 173 0 3 chr11 35560165 35560465 -113223007 - AluJo SINE Alu -13 299 1 8472 115 22 19 chr11 35560465 35561117 -113222355 - HSMAR2 DNA Mariner -640 662 1 1479 141 8 29 chr11 35561535 35561777 -113221695 + AluJo SINE Alu 59 295 -17 319 252 87 26 chr11 35562122 35562237 -113221235 + MER103 DNA DNA 1 122 -44 21 0 0 0 chr11 35562647 35562668 -113220804 + AT_rich Low_complexity Low_complexity 1 21 0 241 276 124 68 chr11 35562778 35563502 -113219970 - L1M4 LINE L1 -2420 3726 2962 14276 121 24 18 chr11 35563908 35566119 -113217353 + L1PB1 LINE L1 1 2223 -4640 6028 128 20 28 chr11 35566117 35566701 -113216771 + L1PB1 LINE L1 5518 6105 -762 * 2769 104 0 3 chr11 35566701 35567066 -113216406 + THE1B LTR MaLR 1 364 0 6028 128 20 28 chr11 35567066 35567834 -113215638 + L1PB1 LINE L1 6105 6860 -7 1842 180 3 0 chr11 35567917 35568212 -113215260 + AluJb SINE Alu 1 296 -16 521 338 38 4 chr11 35568286 35568523 -113214949 - MIR SINE MIR -1 261 17 2434 68 0 40 chr11 35568976 35569300 -113214172 + AluY SINE Alu 1 311 0 432 0 0 0 chr11 35569300 35569348 -113214124 + (TA)n Simple_repeat Simple_repeat 2 49 0 2018 131 10 7 chr11 35570055 35570361 -113213111 + AluSx SINE Alu 1 307 -5 358 285 54 54 chr11 35570919 35571105 -113212367 + MIR SINE MIR 21 206 -56 1036 200 27 22 chr11 35571276 35571501 -113211971 - MIR SINE MIR -10 252 27 1929 113 38 34 chr11 35572964 35573256 -113210216 - AluSq SINE Alu -20 293 1 2269 206 65 55 chr11 35573766 35574254 -113209218 - MLT1E LTR MaLR 0 593 97 1848 163 3 16 chr11 35574254 35574560 -113208912 + AluJb SINE Alu 1 302 -10 2269 206 65 55 chr11 35574560 35574658 -113208814 - MLT1E LTR MaLR -496 97 1 1777 236 92 14 chr11 35575026 35575535 -113207937 - MLT1G LTR MaLR 0 590 42 286 274 11 21 chr11 35575594 35575689 -113207783 - L3 LINE CR1 -1 1576 1483 * 489 363 91 18 chr11 35575686 35576297 -113207175 + L2 LINE L2 2593 3254 -18 207 100 0 0 chr11 35576307 35576337 -113207135 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 427 343 17 11 chr11 35576380 35576561 -113206911 - L3 LINE CR1 -124 1453 1272 2380 112 21 24 chr11 35576815 35577191 -113206281 - THE1C LTR MaLR 0 375 1 242 324 65 29 chr11 35577325 35577464 -113206008 - L3 LINE CR1 -449 1128 985 294 378 67 18 chr11 35577686 35578017 -113205455 - L3 LINE CR1 -579 998 652 180 77 0 0 chr11 35578510 35578536 -113204936 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 627 301 0 19 chr11 35578541 35578750 -113204722 - MLT1I LTR MaLR -204 205 1 206 355 56 89 chr11 35578888 35579102 -113204370 - L3 LINE CR1 -972 605 399 1166 183 5 27 chr11 35584316 35584540 -113198932 + MER20 DNA MER1_type 1 219 0 301 276 161 65 chr11 35585199 35585554 -113197918 + L2 LINE L2 2379 2767 -547 1877 155 17 46 chr11 35585577 35585926 -113197546 - MER44D DNA MER2_type 0 609 1 223 317 41 41 chr11 35585945 35586090 -113197382 + L2 LINE L2 2916 3060 -212 2156 109 7 0 chr11 35586982 35587267 -113196205 + AluSx SINE Alu 1 287 -25 1417 221 51 71 chr11 35587925 35588418 -113195054 + MER113 DNA MER1_type? 6 488 -33 2019 160 0 3 chr11 35588585 35588898 -113194574 + AluJb SINE Alu 1 312 0 752 196 0 7 chr11 35588934 35589087 -113194385 + L1MB3 LINE L1 6029 6180 -3 22 35 0 0 chr11 35589169 35589198 -113194274 + AT_rich Low_complexity Low_complexity 1 29 0 459 0 0 0 chr11 35591517 35591568 -113191904 + (CA)n Simple_repeat Simple_repeat 2 52 0 535 241 96 6 chr11 35591577 35591743 -113191729 - MIR SINE MIR -16 246 66 858 165 0 0 chr11 35592028 35592161 -113191311 - AluJo SINE Alu -177 135 3 182 292 0 0 chr11 35592623 35592671 -113190801 - L2 LINE L2 -4 3268 3221 1146 284 159 14 chr11 35593213 35593717 -113189755 - MLT1K LTR MaLR -4 584 8 4995 167 26 46 chr11 35594008 35595756 -113187716 + L1MB4 LINE L1 4462 6180 0 1958 151 3 7 chr11 35595848 35596152 -113187320 - AluJo SINE Alu -9 303 1 22 35 0 0 chr11 35596214 35596243 -113187229 + AT_rich Low_complexity Low_complexity 1 29 0 1672 181 0 0 chr11 35596478 35596754 -113186718 + AluJo SINE Alu 11 286 -26 675 118 0 0 chr11 35596871 35596973 -113186499 + L1MA4A LINE L1 6189 6290 -13 228 292 8 25 chr11 35597313 35597433 -113186039 - LTR33 LTR ERVL -403 118 1 2250 107 10 13 chr11 35597692 35598001 -113185471 - AluSx SINE Alu -4 308 1 784 257 63 8 chr11 35598234 35598471 -113185001 + MIR SINE MIR 13 262 0 561 248 25 28 chr11 35599034 35599227 -113184245 - MIR SINE MIR -55 207 3 304 214 0 0 chr11 35599859 35599929 -113183543 - MIR SINE MIR -3 259 190 600 212 18 0 chr11 35600351 35600464 -113183008 + FLAM_A SINE Alu 1 115 -18 2152 154 16 24 chr11 35601255 35601535 -113181937 - MLT1B LTR MaLR 0 390 112 2325 110 0 7 chr11 35601535 35601844 -113181628 - AluSq SINE Alu -6 307 1 2152 154 16 24 chr11 35601844 35601939 -113181533 - MLT1B LTR MaLR -278 112 18 1937 135 44 14 chr11 35601939 35602235 -113181237 + AluSx SINE Alu 1 305 -7 340 325 0 16 chr11 35603566 35603692 -113179780 + MIR3 SINE MIR 54 177 -31 392 258 126 25 chr11 35604243 35604441 -113179031 - MIR SINE MIR -25 237 20 23 33 0 0 chr11 35604569 35604599 -113178873 + AT_rich Low_complexity Low_complexity 1 30 0 1795 158 24 0 chr11 35604599 35604890 -113178582 + AluJb SINE Alu 1 298 -14 691 158 55 0 chr11 35604893 35605020 -113178452 - L1MB4 LINE L1 -2 6178 6045 330 250 30 89 chr11 35606108 35606276 -113177196 - MIR SINE MIR -37 225 68 546 217 130 31 chr11 35606645 35606806 -113176666 + MIR SINE MIR 20 196 -66 954 278 173 7 chr11 35607606 35608027 -113175445 + LTR16C LTR ERVL 1 491 0 189 100 0 0 chr11 35608848 35608870 -113174602 + (TC)n Simple_repeat Simple_repeat 1 25 -5 2315 108 0 0 chr11 35608870 35609165 -113174307 - AluSg SINE Alu -15 295 1 189 100 0 0 chr11 35609165 35609172 -113174300 + (TC)n Simple_repeat Simple_repeat 24 30 0 371 257 164 23 chr11 35609647 35609818 -113173654 + L1ME4a LINE L1 5386 5580 -541 2158 112 0 0 chr11 35609866 35610142 -113173330 + AluSc SINE Alu 1 276 -33 2268 141 76 5 chr11 35610267 35610664 -113172808 - MSTA LTR MaLR -3 425 1 449 264 16 0 chr11 35610694 35610823 -113172649 - MER103 DNA DNA -1 165 35 2306 114 0 0 chr11 35610903 35611200 -113172272 - AluSx SINE Alu -15 297 1 2783 191 59 12 chr11 35611360 35612009 -113171463 - L1ME2 LINE L1 -196 5968 5290 481 300 41 27 chr11 35612290 35612510 -113170962 - L1ME3A LINE L1 -273 5897 5675 231 216 147 20 chr11 35612704 35612806 -113170666 + L1ME4a LINE L1 5708 5822 -299 386 270 68 21 chr11 35612847 35613084 -113170388 + L1ME4a LINE L1 5874 6121 0 327 256 64 48 chr11 35614401 35614526 -113168946 - MIR SINE MIR -126 136 10 725 281 215 45 chr11 35615441 35616520 -113166952 - L2 LINE L2 -686 2628 1366 267 243 213 30 chr11 35616617 35616786 -113166686 + L2 LINE L2 466 665 -2649 211 356 84 21 chr11 35617302 35617493 -113165979 + L2 LINE L2 2583 2785 -529 588 294 16 33 chr11 35617897 35618142 -113165330 + MIR SINE MIR 10 250 -12 2203 123 7 0 chr11 35619155 35619465 -113164007 + AluSx SINE Alu 1 312 0 1121 239 31 59 chr11 35619523 35619979 -113163493 - L2 LINE L2 0 3313 2871 315 0 0 0 chr11 35620261 35620296 -113163176 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 204 0 0 chr11 35620393 35620447 -113163025 + MIR SINE MIR 104 157 -105 201 244 0 0 chr11 35620456 35620501 -113162971 + L2 LINE L2 3210 3254 -18 367 173 105 83 chr11 35621451 35621584 -113161888 - L1ME2 LINE L1 -62 6102 5967 443 91 0 0 chr11 35621985 35622051 -113161421 - MIR SINE MIR -118 144 79 393 208 115 0 chr11 35622562 35622658 -113160814 - MIR SINE MIR -46 216 110 331 292 153 42 chr11 35622677 35622789 -113160683 - MIR3 SINE MIR -28 180 47 1758 176 64 9 chr11 35622789 35623135 -113160337 + MLT1A1 LTR MaLR 1 365 0 331 292 153 42 chr11 35623135 35623166 -113160306 - MIR3 SINE MIR -161 47 21 277 257 50 93 chr11 35623482 35623622 -113159850 - MIR SINE MIR -64 198 65 2478 87 3 0 chr11 35624100 35624409 -113159063 + AluSp SINE Alu 1 310 -3 552 260 0 13 chr11 35625620 35625774 -113157698 + MIR SINE MIR 72 223 -39 546 213 81 12 chr11 35625879 35626039 -113157433 + MIR SINE MIR 92 262 0 519 185 35 40 chr11 35626254 35626422 -113157050 + MIR SINE MIR 33 198 -61 576 301 29 10 chr11 35626835 35627044 -113156428 + MIR SINE MIR 11 223 -39 7251 24 12 2 chr11 35627921 35628773 -113154699 + L1PA4 LINE L1 5285 6144 -11 633 195 6 198 chr11 35628918 35629241 -113154231 - MIR SINE MIR 0 262 2 249 242 45 0 chr11 35629603 35629669 -113153803 - MIR SINE MIR -112 150 82 229 320 107 8 chr11 35630845 35630967 -113152505 - L2 LINE L2 -190 3082 2949 236 402 66 4 chr11 35631043 35631287 -113152185 - L2 LINE L2 -462 2852 2594 2263 273 90 36 chr11 35631411 35632012 -113151460 - L2 LINE L2 -5 3308 2741 1663 167 3 30 chr11 35632012 35632311 -113151161 + AluJo SINE Alu 1 291 -21 2263 273 90 36 chr11 35632311 35632985 -113150487 - L2 LINE L2 -572 2741 1969 1171 254 53 60 chr11 35633111 35633545 -113149927 - MLT1H LTR MaLR 0 549 119 2260 111 0 7 chr11 35634095 35634392 -113149080 - AluSx SINE Alu -17 295 1 1990 123 14 7 chr11 35635318 35635603 -113147869 + AluSx SINE Alu 1 287 -25 598 245 36 0 chr11 35635940 35636079 -113147393 + MER103 DNA DNA 8 151 -15 245 241 19 0 chr11 35636227 35636281 -113147191 + G-rich Low_complexity Low_complexity 5 59 0 250 340 56 15 chr11 35636683 35636882 -113146590 + MIR SINE MIR 35 242 -20 354 23 0 0 chr11 35637050 35637093 -113146379 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 86 0 0 chr11 35638358 35638393 -113145079 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 227 30 0 30 chr11 35639411 35639444 -113144028 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 749 310 105 21 chr11 35642025 35642388 -113141084 - L2 LINE L2 -1 3312 2981 2537 62 10 0 chr11 35642388 35642694 -113140778 + AluSq SINE Alu 1 309 -4 749 310 105 21 chr11 35642694 35642953 -113140519 - L2 LINE L2 -332 2981 2619 1962 231 61 32 chr11 35642962 35643157 -113140315 - MLT1F LTR MaLR 0 542 354 4522 98 18 15 chr11 35643157 35643823 -113139649 + L1PB2 LINE L1 5483 6150 -1 1962 231 61 32 chr11 35643823 35644014 -113139458 - MLT1F LTR MaLR -188 354 135 396 0 0 0 chr11 35644014 35644058 -113139414 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1962 231 61 32 chr11 35644058 35644197 -113139275 - MLT1F LTR MaLR -407 135 1 383 281 59 22 chr11 35646783 35646918 -113136554 - MIR3 SINE MIR -54 154 15 735 216 159 24 chr11 35646949 35647157 -113136315 + MIR SINE MIR 6 241 -21 231 36 0 0 chr11 35647158 35647186 -113136286 + (ATG)n Simple_repeat Simple_repeat 2 29 0 197 293 86 0 chr11 35649302 35649360 -113134112 - L2 LINE L2 -1 3312 3250 219 313 16 0 chr11 35649419 35649483 -113133989 - L2 LINE L2 -71 3201 3137 1249 162 50 5 chr11 35649607 35649928 -113133544 - MSTD LTR MaLR 0 396 2 1001 123 0 0 chr11 35651282 35651420 -113132052 - FLAM_C SINE Alu -5 138 1 335 68 23 0 chr11 35651422 35651466 -113132006 - MSTA LTR MaLR -9 419 375 5471 115 9 1 chr11 35651466 35652276 -113131196 - L1PA14 LINE L1 0 6161 5346 1761 128 196 6 chr11 35652276 35652603 -113130869 - MSTA LTR MaLR -39 389 1 226 315 168 30 chr11 35652794 35652991 -113130481 + LTR16C LTR ERVL 11 234 -257 1221 198 23 48 chr11 35653024 35653340 -113130132 + MER74A LTR ERVL 1 225 -235 695 130 22 87 chr11 35653344 35653395 -113130077 + MER74A LTR ERVL 430 483 -75 486 0 0 0 chr11 35653395 35653449 -113130023 + (TA)n Simple_repeat Simple_repeat 2 55 0 2206 99 0 40 chr11 35653452 35653774 -113129698 - AluSc SINE Alu 0 309 1 695 130 22 87 chr11 35653774 35653856 -113129616 + MER74A LTR ERVL 485 558 0 793 264 15 0 chr11 35653856 35654053 -113129419 + LTR16C LTR ERVL 282 481 -10 1594 246 67 9 chr11 35654920 35655351 -113128121 - MLT1K LTR MaLR -4 584 129 1707 158 24 7 chr11 35655723 35656014 -113127458 + AluJb SINE Alu 4 299 -13 957 286 75 48 chr11 35656668 35656822 -113126650 - L1MEd LINE L1 -4649 1566 1418 8176 27 0 0 chr11 35656822 35658376 -113125096 - L1PA4 LINE L1 0 6155 4601 957 286 75 48 chr11 35658376 35659043 -113124429 - L1MEd LINE L1 -4797 1418 778 838 158 0 0 chr11 35659075 35659202 -113124270 - FLAM_C SINE Alu -16 127 1 407 262 58 62 chr11 35659257 35659482 -113123990 - L1MEd LINE L1 -5444 675 452 487 184 158 9 chr11 35659549 35659663 -113123809 - Charlie4 DNA MER1_type -13 1948 1818 564 233 73 18 chr11 35660146 35660331 -113123141 + L1MC4a LINE L1 5721 5925 -239 196 219 0 0 chr11 35660855 35660896 -113122576 + L2 LINE L2 3214 3254 -18 838 244 109 9 chr11 35661502 35661731 -113121741 + MIR SINE MIR 9 260 -2 940 161 7 7 chr11 35661743 35661892 -113121580 + MLT1A1 LTR MaLR 171 319 -46 233 354 52 0 chr11 35661903 35661999 -113121473 - L2 LINE L2 -1 3271 3171 2289 111 0 0 chr11 35661999 35662296 -113121176 - AluSx SINE Alu -14 298 2 2089 198 59 86 chr11 35662353 35662910 -113120562 - MLT1F LTR MaLR 0 542 1 531 188 0 0 chr11 35663361 35663478 -113119994 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 216 0 0 0 chr11 35663526 35663550 -113119922 + (CA)n Simple_repeat Simple_repeat 1 24 0 587 253 62 10 chr11 35663563 35663757 -113119715 + L2 LINE L2 3107 3310 -3 30 0 0 0 chr11 35663961 35663991 -113119481 + AT_rich Low_complexity Low_complexity 1 30 0 1065 67 22 15 chr11 35663991 35664126 -113119346 - L1PA8 LINE L1 -9 6163 6028 380 172 69 35 chr11 35664978 35665094 -113118378 + L1ME4a LINE L1 5991 6110 -11 1635 187 0 27 chr11 35666178 35666502 -113116970 + AluJo SINE Alu 1 312 0 367 240 86 15 chr11 35667821 35667957 -113115515 - MIR SINE MIR -54 154 3 498 25 114 101 chr11 35668185 35668228 -113115244 - MADE1 DNA Mariner 0 80 39 2302 87 0 3 chr11 35668228 35668517 -113114955 + AluY SINE Alu 1 288 -23 252 0 0 0 chr11 35668517 35668545 -113114927 + (TATG)n Simple_repeat Simple_repeat 1 28 0 498 25 114 101 chr11 35668545 35668579 -113114893 - MADE1 DNA Mariner -40 40 1 417 330 6 29 chr11 35669285 35669458 -113114014 + L3 LINE CR1 920 1088 -489 2452 50 0 0 chr11 35670710 35671033 -113112439 + AluY SINE Alu 1 323 0 688 161 253 0 chr11 35671156 35671318 -113112154 - MER3 DNA MER1_type 0 209 7 1811 179 0 3 chr11 35672317 35672614 -113110858 - AluJb SINE Alu -16 296 1 255 219 31 73 chr11 35673609 35673705 -113109767 - L2 LINE L2 -208 3064 2973 789 247 105 37 chr11 35673728 35674286 -113109186 + MER115 DNA AcHobo 58 693 0 2814 10 0 0 chr11 35675582 35675884 -113107588 + AluYa5 SINE Alu 1 302 -9 403 200 100 8 chr11 35676809 35676929 -113106543 + L1ME4a LINE L1 5974 6104 -17 316 267 212 9 chr11 35677152 35677369 -113106103 - MIR SINE MIR 0 262 2 763 293 39 26 chr11 35677575 35677804 -113105668 - MIR SINE MIR 0 262 31 459 331 19 19 chr11 35678493 35678647 -113104825 + MIR SINE MIR 1 154 -108 306 205 152 45 chr11 35678648 35678736 -113104736 + MER104 DNA Tc2 2 106 -1792 1577 176 41 14 chr11 35678736 35679031 -113104441 - AluJb SINE Alu -9 303 1 306 205 152 45 chr11 35679031 35679054 -113104418 + MER104 DNA Tc2 106 125 -55 22 0 0 0 chr11 35679235 35679257 -113104215 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 35679359 35679383 -113104089 + AT_rich Low_complexity Low_complexity 1 24 0 629 286 49 27 chr11 35679889 35680113 -113103359 - MIR SINE MIR -14 248 20 214 349 77 59 chr11 35680197 35680366 -113103106 - L2 LINE L2 0 3272 3101 405 58 0 0 chr11 35680367 35680419 -113103053 + (TG)n Simple_repeat Simple_repeat 1 52 0 251 342 35 40 chr11 35680534 35680733 -113102739 + L2 LINE L2 2638 2835 -479 247 264 65 89 chr11 35680802 35680946 -113102526 + L2 LINE L2 2867 3004 -268 2273 107 10 3 chr11 35680946 35681256 -113102216 - AluSx SINE Alu 0 312 1 247 264 65 89 chr11 35681256 35681357 -113102115 + L2 LINE L2 3004 3106 -166 2563 62 9 0 chr11 35681554 35681892 -113101580 + L1PA6 LINE L1 4799 5139 -1007 7506 62 5 1 chr11 35682017 35683029 -113100443 + L1PA6 LINE L1 5135 6149 -5 4916 168 29 10 chr11 35684934 35686341 -113097131 - L1MB7 LINE L1 -15 6169 4734 1352 144 57 84 chr11 35686357 35686656 -113096816 - AluJb SINE Alu -21 291 1 848 154 16 0 chr11 35686897 35687020 -113096452 - FLAM_A SINE Alu -8 125 1 335 258 245 0 chr11 35687818 35687981 -113095491 - MLT1J LTR MaLR -50 461 259 1304 191 92 31 chr11 35688029 35688323 -113095149 - AluJo SINE Alu 0 312 1 542 275 164 0 chr11 35688323 35688512 -113094960 - MLT1J LTR MaLR -291 220 1 493 324 77 69 chr11 35689052 35689401 -113094071 - L2 LINE L2 -1 3271 2920 2349 167 32 2 chr11 35689751 35690159 -113093313 - MSTB LTR MaLR -6 420 1 585 321 40 18 chr11 35690445 35690669 -113092803 + MIR SINE MIR 20 248 -14 858 209 6 18 chr11 35691310 35691473 -113091999 + FRAM SINE Alu 1 158 -18 1724 153 10 48 chr11 35691473 35691786 -113091686 + AluJo SINE Alu 1 301 -11 633 289 186 27 chr11 35692358 35692911 -113090561 + L2 LINE L2 2672 3313 0 297 51 0 0 chr11 35693406 35693445 -113090027 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 309 112 78 chr11 35693477 35693746 -113089726 + L2 LINE L2 2988 3265 -7 186 43 0 0 chr11 35693754 35693777 -113089695 + (CA)n Simple_repeat Simple_repeat 1 23 0 274 186 57 0 chr11 35694562 35694632 -113088840 - MIR SINE MIR -41 221 148 21 0 0 0 chr11 35694632 35694653 -113088819 + AT_rich Low_complexity Low_complexity 1 21 0 580 82 0 0 chr11 35694655 35694728 -113088744 - AluSc SINE Alu -27 282 210 867 76 0 0 chr11 35694728 35694833 -113088639 - AluSc SINE Alu -204 105 1 495 189 85 28 chr11 35694835 35694941 -113088531 - MIR SINE MIR -102 160 49 180 0 0 0 chr11 35695947 35695967 -113087505 + (TG)n Simple_repeat Simple_repeat 1 20 0 1456 248 163 16 chr11 35695986 35696478 -113086994 - L1ME1 LINE L1 -5 6161 5598 320 145 16 0 chr11 35697236 35697298 -113086174 - L1PA15 LINE L1 -5 6160 6098 489 323 80 10 chr11 35697899 35698299 -113085173 - L1ME1 LINE L1 -1645 4501 4074 1978 135 10 7 chr11 35698472 35698768 -113084704 - AluSx SINE Alu -12 300 4 306 285 15 39 chr11 35698908 35699038 -113084434 + CT-rich Low_complexity Low_complexity 2 128 0 2202 165 40 3 chr11 35699472 35699823 -113083649 + THE1B LTR MaLR 1 364 0 683 311 21 8 chr11 35700330 35700571 -113082901 + MIR SINE MIR 15 258 -4 26 0 0 0 chr11 35701370 35701396 -113082076 + AT_rich Low_complexity Low_complexity 1 26 0 3833 124 38 5 chr11 35701427 35702040 -113081432 - L1MA8 LINE L1 -18 6273 5641 1465 138 13 4 chr11 35702037 35702262 -113081210 + L1MA8 LINE L1 5431 5657 -655 * 21 0 0 0 chr11 35702446 35702467 -113081005 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr11 35703302 35703327 -113080145 + (T)n Simple_repeat Simple_repeat 1 25 0 672 251 37 25 chr11 35703510 35703673 -113079799 - MER5B DNA MER1_type -12 166 2 253 318 100 9 chr11 35703889 35703999 -113079473 + MIR SINE MIR 27 146 -62 807 292 22 13 chr11 35704386 35704612 -113078860 - MIR SINE MIR 0 262 35 325 299 100 30 chr11 35704692 35704837 -113078635 - MIR SINE MIR -88 120 19 240 191 0 0 chr11 35704876 35704923 -113078549 - MIR SINE MIR -56 206 160 1433 246 107 26 chr11 35704965 35705015 -113078457 - MLT1J1 LTR MaLR -12 434 390 1529 191 48 94 chr11 35705015 35705407 -113078065 - MLT1A2 LTR MaLR 0 374 1 1433 246 107 26 chr11 35705407 35705747 -113077725 - MLT1J1 LTR MaLR -56 390 12 528 311 51 51 chr11 35705787 35706022 -113077450 - MIR SINE MIR -15 247 13 196 231 26 0 chr11 35706049 35706088 -113077384 + MIR SINE MIR 38 77 -131 1674 162 79 4 chr11 35706227 35706505 -113076967 - AluJb SINE Alu -13 299 1 562 247 160 0 chr11 35706681 35706831 -113076641 - MER5A DNA MER1_type -5 184 11 319 303 107 0 chr11 35706953 35707075 -113076397 + L2 LINE L2 3136 3270 -2 2033 132 3 3 chr11 35707988 35708276 -113075196 + AluSx SINE Alu 2 289 -23 948 153 101 48 chr11 35709052 35709344 -113074128 + MSTD LTR MaLR 1 361 -34 453 206 15 132 chr11 35709810 35709946 -113073526 + MER5B DNA MER1_type 59 178 0 180 0 0 0 chr11 35710986 35711006 -113072466 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7492 18 0 0 chr11 35711028 35711866 -113071606 - L1PA3 LINE L1 0 6155 5318 2122 101 3 3 chr11 35711879 35712165 -113071307 - AluSx SINE Alu -26 286 1 720 282 86 83 chr11 35712568 35713200 -113070272 + L2 LINE L2 2640 3293 -20 367 239 44 53 chr11 35713786 35713899 -113069573 + MIR SINE MIR 28 139 -123 1418 142 0 26 chr11 35713909 35714135 -113069337 + AluJo SINE Alu 1 220 -92 779 229 125 39 chr11 35714329 35714706 -113068766 - MLT1G LTR MaLR -104 486 1 359 248 107 16 chr11 35715323 35715444 -113068028 + L2 LINE L2 3179 3310 -3 269 339 83 21 chr11 35715506 35715698 -113067774 - L3 LINE CR1 -703 874 671 243 279 19 67 chr11 35715671 35715775 -113067697 - L2 LINE L2 -3 3269 3171 * 287 263 184 26 chr11 35716090 35716204 -113067268 - MIR SINE MIR -111 151 20 280 244 33 33 chr11 35716205 35716295 -113067177 + MIR SINE MIR 167 256 -6 1489 140 16 8 chr11 35716456 35716713 -113066759 + L1MA4 LINE L1 6042 6300 0 21 0 0 0 chr11 35716740 35716761 -113066711 + AT_rich Low_complexity Low_complexity 1 21 0 370 275 57 33 chr11 35717347 35717558 -113065914 - L2 LINE L2 -1 3312 3097 969 221 74 5 chr11 35717618 35717835 -113065637 - MIR SINE MIR 0 262 31 528 279 54 58 chr11 35718599 35718839 -113064633 + MIR SINE MIR 3 241 -21 1958 204 84 51 chr11 35718864 35719412 -113064060 - L1ME3A LINE L1 -5 6165 5600 2306 85 7 3 chr11 35719882 35720175 -113063297 + AluSx SINE Alu 1 294 -18 324 265 103 97 chr11 35720226 35720334 -113063138 - MIR SINE MIR -4 258 152 294 29 0 0 chr11 35720334 35720369 -113063103 + (TTCCC)n Simple_repeat Simple_repeat 1 35 0 2168 137 0 0 chr11 35720370 35720670 -113062802 - AluSx SINE Alu -12 300 1 1984 147 3 0 chr11 35720675 35720968 -113062504 - AluJb SINE Alu -18 294 1 324 265 103 97 chr11 35720968 35721036 -113062436 - MIR SINE MIR -113 149 73 833 241 38 83 chr11 35721778 35722044 -113061428 - MIR SINE MIR -1 261 8 1658 161 45 7 chr11 35722346 35722632 -113060840 + AluJo SINE Alu 1 297 -15 1093 192 186 39 chr11 35723035 35723425 -113060047 - MER110A LTR ERV1 0 468 53 181 286 179 0 chr11 35723568 35723652 -113059820 + MIR SINE MIR 158 256 -6 336 280 55 55 chr11 35723721 35723921 -113059551 - LTR67 LTR ERVL -4 553 354 390 311 34 14 chr11 35724706 35724854 -113058618 + MIR3 SINE MIR 35 185 -23 181 104 0 42 chr11 35726032 35726080 -113057392 + (TC)n Simple_repeat Simple_repeat 1 46 0 1980 127 0 4 chr11 35726114 35726389 -113057083 - AluSx SINE Alu -38 274 1 195 270 90 0 chr11 35727267 35727356 -113056116 + MIR SINE MIR 140 236 -26 512 314 92 21 chr11 35727618 35727857 -113055615 + MIR SINE MIR 1 256 -6 1874 147 7 0 chr11 35728337 35728623 -113054849 - AluJb SINE Alu -24 288 1 498 332 97 5 chr11 35728629 35728825 -113054647 - MIR SINE MIR -36 226 13 211 312 21 21 chr11 35729402 35729495 -113053977 + CT-rich Low_complexity Low_complexity 3 95 0 246 239 56 14 chr11 35731776 35731847 -113051625 + MIR3 SINE MIR 88 161 -47 376 299 52 8 chr11 35731905 35732039 -113051433 - MER117 DNA MER1_type -26 171 32 2903 10 0 0 chr11 35732042 35732353 -113051119 - AluY SINE Alu 0 311 1 653 168 97 38 chr11 35733574 35733759 -113049713 + L1MC5 LINE L1 7331 7526 -435 2314 112 0 0 chr11 35733765 35734069 -113049403 + AluSg1 SINE Alu 4 307 -2 262 357 48 16 chr11 35734192 35734318 -113049154 - MIR SINE MIR -60 148 19 1412 158 17 33 chr11 35734699 35734939 -113048533 - MER46A DNA MER2_type 0 236 1 2255 203 17 25 chr11 35735853 35736332 -113047140 - L1MA10 LINE L1 0 6334 5860 504 0 0 0 chr11 35736587 35736643 -113046829 + (CA)n Simple_repeat Simple_repeat 2 57 0 1666 158 3 37 chr11 35736783 35737081 -113046391 + AluJo SINE Alu 1 288 -24 896 260 17 22 chr11 35737189 35737420 -113046052 + MIR SINE MIR 14 243 -19 198 250 45 0 chr11 35737430 35737474 -113045998 + L2 LINE L2 3224 3269 -3 863 115 14 36 chr11 35738532 35738671 -113044801 + AluJo SINE Alu 17 152 -160 354 23 0 0 chr11 35788846 35788889 -112994583 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 86 0 0 chr11 35790154 35790189 -112993283 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 227 30 0 30 chr11 35791207 35791240 -112992232 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 749 310 105 21 chr11 35793821 35794184 -112989288 - L2 LINE L2 -1 3312 2981 2537 62 10 0 chr11 35794184 35794490 -112988982 + AluSq SINE Alu 1 309 -4 749 310 105 21 chr11 35794490 35794749 -112988723 - L2 LINE L2 -332 2981 2619 1962 231 61 32 chr11 35794758 35794953 -112988519 - MLT1F LTR MaLR 0 542 354 4522 98 18 15 chr11 35794953 35795619 -112987853 + L1PB2 LINE L1 5483 6150 -1 1962 231 61 32 chr11 35795619 35795810 -112987662 - MLT1F LTR MaLR -188 354 135 396 0 0 0 chr11 35795810 35795854 -112987618 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1962 231 61 32 chr11 35795854 35795993 -112987479 - MLT1F LTR MaLR -407 135 1 383 281 59 22 chr11 35798579 35798714 -112984758 - MIR3 SINE MIR -54 154 15 735 216 159 24 chr11 35798745 35798953 -112984519 + MIR SINE MIR 6 241 -21 231 36 0 0 chr11 35798954 35798982 -112984490 + (ATG)n Simple_repeat Simple_repeat 2 29 0 197 293 86 0 chr11 35801098 35801156 -112982316 - L2 LINE L2 -1 3312 3250 219 313 16 0 chr11 35801215 35801279 -112982193 - L2 LINE L2 -71 3201 3137 1249 162 50 5 chr11 35801403 35801724 -112981748 - MSTD LTR MaLR 0 396 2 1001 123 0 0 chr11 35803078 35803216 -112980256 - FLAM_C SINE Alu -5 138 1 335 68 23 0 chr11 35803218 35803262 -112980210 - MSTA LTR MaLR -9 419 375 5471 115 9 1 chr11 35803262 35804072 -112979400 - L1PA14 LINE L1 0 6161 5346 1761 128 196 6 chr11 35804072 35804399 -112979073 - MSTA LTR MaLR -39 389 1 226 315 168 30 chr11 35804590 35804787 -112978685 + LTR16C LTR ERVL 11 234 -257 1221 198 23 48 chr11 35804820 35805136 -112978336 + MER74A LTR ERVL 1 225 -235 692 130 22 87 chr11 35805140 35805191 -112978281 + MER74A LTR ERVL 430 483 -75 486 0 0 0 chr11 35805191 35805245 -112978227 + (TA)n Simple_repeat Simple_repeat 2 55 0 2206 99 0 40 chr11 35805248 35805570 -112977902 - AluSc SINE Alu 0 309 1 692 130 22 87 chr11 35805570 35805652 -112977820 + MER74A LTR ERVL 485 558 0 793 259 15 0 chr11 35805652 35805849 -112977623 + LTR16C LTR ERVL 282 481 -10 1604 246 67 9 chr11 35806716 35807147 -112976325 - MLT1K LTR MaLR -4 584 129 1720 158 24 7 chr11 35807519 35807810 -112975662 + AluJb SINE Alu 4 299 -13 903 253 147 9 chr11 35808115 35808435 -112975037 + L2 LINE L2 2931 3294 -19 208 167 0 0 chr11 35808404 35808440 -112975032 + MIR SINE MIR 219 254 -8 * 1037 119 12 0 chr11 35808449 35808617 -112974855 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 450 312 41 12 chr11 35811156 35811326 -112972146 - MIR SINE MIR -8 254 80 180 152 0 0 chr11 35811814 35811847 -112971625 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 909 240 111 11 chr11 35814716 35814987 -112968485 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 35815393 35815414 -112968058 + AT_rich Low_complexity Low_complexity 1 21 0 43641 31 23 5 chr11 35815418 35821465 -112962007 - L1PA3 LINE L1 0 6155 3 422 302 97 58 chr11 35821945 35822080 -112961392 + L2 LINE L2 2842 2970 -302 878 210 33 23 chr11 35822080 35822294 -112961178 - MER20 DNA MER1_type -3 216 1 422 302 97 58 chr11 35822294 35822572 -112960900 + L2 LINE L2 2970 3271 -1 304 313 96 48 chr11 35822843 35823175 -112960297 - MLT1K LTR MaLR -156 432 85 1461 185 38 24 chr11 35823244 35823407 -112960065 - AluJo SINE Alu -10 292 122 207 0 0 0 chr11 35823407 35823430 -112960042 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1461 185 38 24 chr11 35823430 35823553 -112959919 - AluJo SINE Alu -180 122 2 2012 114 0 78 chr11 35823627 35823961 -112959511 - AluSq SINE Alu -5 308 1 656 247 7 6 chr11 35824431 35824603 -112958869 + MIR SINE MIR 49 216 -46 2190 116 0 0 chr11 35824693 35825002 -112958470 - AluSx SINE Alu 0 309 1 284 217 217 11 chr11 35826442 35826534 -112956938 - L2 LINE L2 0 3313 3203 2410 195 84 56 chr11 35826534 35827006 -112956466 + MER44D DNA MER2_type 13 385 -2102 1981 123 63 0 chr11 35827006 35827290 -112956182 - AluSx SINE Alu -10 302 1 2410 195 84 56 chr11 35827290 35827515 -112955957 + MER44D DNA MER2_type 385 602 -3 382 274 181 7 chr11 35827520 35827797 -112955675 - L2 LINE L2 -112 3201 2877 489 276 214 27 chr11 35827801 35828187 -112955285 + L2 LINE L2 2428 2740 -532 1858 142 55 85 chr11 35828187 35828589 -112954883 - MLT1B LTR MaLR 0 390 1 489 276 214 27 chr11 35828589 35828737 -112954735 + L2 LINE L2 2740 3071 -201 3238 204 88 30 chr11 35828773 35829074 -112954398 - L1ME2 LINE L1 -19 6145 5863 308 43 22 0 chr11 35829074 35829120 -112954352 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3238 204 88 30 chr11 35829120 35829752 -112953720 - L1ME2 LINE L1 -301 5863 5150 355 254 82 99 chr11 35830094 35830192 -112953280 + L1ME4a LINE L1 5583 5681 -440 2295 108 0 0 chr11 35830192 35830499 -112952973 - AluSx SINE Alu -5 307 1 355 254 82 99 chr11 35830499 35830775 -112952697 + L1ME4a LINE L1 5681 5963 -158 206 207 17 0 chr11 35830786 35830844 -112952628 + (TA)n Simple_repeat Simple_repeat 1 59 0 443 199 48 41 chr11 35831284 35831430 -112952042 + L1ME4a LINE L1 5956 6102 -19 271 313 82 14 chr11 35831874 35832021 -112951451 - L2 LINE L2 0 3272 3116 189 222 8 167 chr11 35832016 35832142 -112951330 - MIR SINE MIR 0 262 157 * 558 0 0 0 chr11 35832232 35832294 -112951178 + (TA)n Simple_repeat Simple_repeat 1 62 0 729 292 86 0 chr11 35832294 35832527 -112950945 + MIR SINE MIR 10 262 0 291 333 48 8 chr11 35832543 35832669 -112950803 + L2 LINE L2 3137 3267 -5 293 291 29 29 chr11 35832825 35832928 -112950544 - MIR3 SINE MIR -43 165 63 1953 185 98 49 chr11 35832991 35833500 -112949972 - LTR10A LTR ERV1 -61 548 15 287 231 213 28 chr11 35834351 35834459 -112949013 + MIR3 SINE MIR 65 192 -16 21 36 0 0 chr11 35834767 35834795 -112948677 + AT_rich Low_complexity Low_complexity 1 28 0 482 183 111 8 chr11 35835202 35835328 -112948144 - MIR SINE MIR -26 236 98 531 176 0 0 chr11 35835729 35835820 -112947652 - MER5A DNA MER1_type 0 189 99 500 286 138 35 chr11 35837067 35837138 -112946334 + MIR SINE MIR 4 66 -196 2307 121 43 88 chr11 35837138 35837602 -112945870 + MER65A LTR ERV1 3 445 0 500 286 138 35 chr11 35837602 35837761 -112945711 + MIR SINE MIR 66 258 -4 1849 174 30 0 chr11 35837762 35838060 -112945412 + AluJb SINE Alu 1 307 -5 21 0 0 0 chr11 35838241 35838262 -112945210 + AT_rich Low_complexity Low_complexity 1 21 0 2138 93 0 24 chr11 35838644 35838955 -112944517 - AluSx SINE Alu 0 304 1 688 267 40 13 chr11 35839565 35839790 -112943682 - MIR SINE MIR -12 250 20 1464 144 94 67 chr11 35839891 35840190 -112943282 + AluJo SINE Alu 1 307 -5 715 186 8 0 chr11 35840423 35840547 -112942925 + FLAM_A SINE Alu 18 142 0 1929 106 0 0 chr11 35841865 35842120 -112941352 + AluSg SINE Alu 50 304 -6 7619 34 14 0 chr11 35842616 35843862 -112939610 - L1PA4 LINE L1 -14 6141 4889 43454 35 22 1 chr11 35844595 35850658 -112932814 + L1PA3 LINE L1 1 6191 0 36252 86 11 7 chr11 35851052 35856049 -112927423 + L1P LINE L1 238 5254 -892 1212 58 0 0 chr11 35856049 35856199 -112927273 + L1PA6 LINE L1 6000 6153 -1 1369 224 63 15 chr11 35856200 35856598 -112926874 - L1M4c LINE L1 -4768 1616 1200 261 119 0 0 chr11 35856709 35856751 -112926721 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 182 36 0 36 chr11 35857785 35857813 -112925659 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 253 336 45 22 chr11 35857902 35858036 -112925436 - L2 LINE L2 -3 3269 3133 1070 285 78 42 chr11 35858153 35858778 -112924694 - L1MEd LINE L1 -4745 1565 832 2124 95 0 3 chr11 35858778 35859063 -112924409 - AluSg SINE Alu -26 284 1 1070 285 78 42 chr11 35859063 35859332 -112924140 - L1MEd LINE L1 -5478 832 574 247 314 151 6 chr11 35860066 35860225 -112923247 - MIR SINE MIR -69 193 12 595 257 88 61 chr11 35860265 35860526 -112922946 - L2 LINE L2 0 3313 3046 235 360 20 0 chr11 35861706 35861806 -112921666 + MIR3 SINE MIR 74 175 -33 345 273 40 0 chr11 35862206 35862305 -112921167 - MIR3 SINE MIR -3 205 103 2071 130 0 0 chr11 35862306 35862606 -112920866 + AluSx SINE Alu 1 300 -12 537 267 65 54 chr11 35864081 35864358 -112919114 - L1ME3A LINE L1 -207 5963 5684 485 283 107 6 chr11 35864879 35865056 -112918416 - MER91A DNA MER1_type 0 196 2 2079 90 42 0 chr11 35865087 35865375 -112918097 + AluY SINE Alu 1 300 -11 181 250 16 31 chr11 35865997 35866061 -112917411 + MIR SINE MIR 44 106 -102 796 277 34 47 chr11 35866065 35866300 -112917172 - MIR SINE MIR 0 262 31 2034 131 0 3 chr11 35866389 35866702 -112916770 + AluSx SINE Alu 1 312 0 445 200 117 8 chr11 35868057 35868177 -112915295 + MER117 DNA MER1_type 65 197 0 347 330 110 53 chr11 35868536 35868763 -112914709 - L2 LINE L2 -31 3241 3002 2045 144 6 34 chr11 35869287 35869641 -112913831 + MLT1A1 LTR MaLR 21 364 -1 6682 137 55 37 chr11 35869890 35871146 -112912326 - MER52C LTR ERV1 0 1278 1 386 225 208 17 chr11 35871645 35871765 -112911707 + MIR SINE MIR 118 260 -2 915 152 0 0 chr11 35871843 35871981 -112911491 + FRAM SINE Alu 1 138 -38 2042 91 0 17 chr11 35872191 35872478 -112910994 - AluSc SINE Alu -18 291 10 324 0 0 0 chr11 35876374 35876410 -112907062 + (CA)n Simple_repeat Simple_repeat 2 37 0 254 289 70 18 chr11 35878297 35878411 -112905061 + MIR SINE MIR 87 206 -56 1568 151 154 31 chr11 35880436 35880761 -112902711 + MLT1A1 LTR MaLR 1 365 0 15376 174 39 8 chr11 35881647 35888155 -112895317 - L1PB1 LINE L1 0 6867 1 421 267 60 9 chr11 35888269 35888385 -112895087 - L2 LINE L2 -1 3271 3150 205 270 40 40 chr11 35889219 35889293 -112894179 - L3 LINE CR1 0 1577 1504 320 226 129 11 chr11 35889685 35889778 -112893694 + MIR SINE MIR 39 142 -120 1624 163 37 17 chr11 35890341 35890635 -112892837 + AluJo SINE Alu 1 300 -12 227 354 31 16 chr11 35891002 35891129 -112892343 + MIR SINE MIR 132 260 -2 284 260 41 0 chr11 35891588 35891661 -112891811 + MIR SINE MIR 65 140 -68 1007 182 14 42 chr11 35891802 35892016 -112891456 - MER3 DNA MER1_type 0 209 2 1804 175 35 27 chr11 35892163 35892534 -112890938 + MLT1A2 LTR MaLR 1 374 0 309 280 91 23 chr11 35892974 35893106 -112890366 - MIR SINE MIR -19 243 103 225 260 0 0 chr11 35893121 35893171 -112890301 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 995 231 45 25 chr11 35893283 35893525 -112889947 - MIR SINE MIR -3 259 13 541 234 75 109 chr11 35893771 35894010 -112889462 - L2 LINE L2 -26 3246 3016 2493 169 83 9 chr11 35894950 35895417 -112888055 - LTR44 LTR ERV1 0 519 18 328 265 24 0 chr11 35895926 35896026 -112887446 - MIR SINE MIR -56 152 50 1380 160 98 21 chr11 35896509 35896796 -112886676 + AluJo SINE Alu 1 309 -3 1894 209 40 21 chr11 35897044 35897470 -112886002 + MER63B DNA MER1_type 3 436 0 395 181 0 75 chr11 35898049 35898075 -112885397 + LTR33 LTR ERVL 423 449 -72 1741 178 106 3 chr11 35898075 35898406 -112885066 - MLT1A1 LTR MaLR 0 365 1 395 181 0 75 chr11 35898406 35898473 -112884999 + LTR33 LTR ERVL 449 509 -12 744 326 30 4 chr11 35898549 35898785 -112884687 + MIR SINE MIR 21 262 0 364 163 165 3 chr11 35898793 35898896 -112884576 - L1MA9 LINE L1 -168 6132 6005 533 312 50 5 chr11 35899529 35899728 -112883744 + MIR SINE MIR 47 254 -8 472 220 220 43 chr11 35900113 35900368 -112883104 + Charlie8 DNA MER1_type 38 337 -2080 421 302 14 7 chr11 35900397 35900536 -112882936 + L2 LINE L2 1429 1568 -1746 652 189 14 42 chr11 35900539 35900682 -112882790 + MSTD LTR MaLR 1 139 -257 704 44 0 11 chr11 35900685 35900776 -112882696 + AluY SINE Alu 210 299 -12 602 193 79 13 chr11 35900830 35901021 -112882451 + MSTD LTR MaLR 169 396 0 2384 262 107 0 chr11 35901024 35901781 -112881691 + L2 LINE L2 1571 2408 -906 918 148 0 13 chr11 35901893 35902048 -112881424 - FRAM SINE Alu -24 152 1 979 249 168 20 chr11 35902076 35902672 -112880800 + L2 LINE L2 2611 3313 0 1874 123 3 64 chr11 35903567 35903893 -112879579 - AluSx SINE Alu -6 306 1 1109 198 33 16 chr11 35905327 35905453 -112878019 + AluJb SINE Alu 1 123 -189 261 0 0 0 chr11 35905453 35905482 -112877990 + (CA)n Simple_repeat Simple_repeat 2 30 0 1109 198 33 16 chr11 35905482 35905598 -112877874 + AluJb SINE Alu 123 247 -65 252 0 0 0 chr11 35906888 35906916 -112876556 + (TG)n Simple_repeat Simple_repeat 2 29 0 306 258 101 11 chr11 35906946 35907035 -112876437 + MIR SINE MIR 79 175 -87 1149 185 35 52 chr11 35907301 35907616 -112875856 + AluJo SINE Alu 1 310 0 577 174 122 111 chr11 35907619 35907907 -112875565 + MER34 LTR ERV1 252 542 0 407 268 197 28 chr11 35907916 35908129 -112875343 + MIR SINE MIR 12 260 -2 389 227 184 28 chr11 35909346 35909487 -112873985 + MIR SINE MIR 81 243 -19 578 241 186 10 chr11 35909663 35909862 -112873610 - MIR SINE MIR -1 261 28 244 295 9 67 chr11 35910201 35910306 -112873166 + MIR3 SINE MIR 1 99 -109 1211 176 59 64 chr11 35910609 35910931 -112872541 + MLT2B3 LTR ERVL 238 554 0 292 316 112 11 chr11 35911608 35911795 -112871677 - MIR SINE MIR -55 207 2 238 232 277 0 chr11 35912065 35912177 -112871295 + MIR SINE MIR 4 146 -62 461 259 61 42 chr11 35915741 35915853 -112867619 + L1MC/D LINE L1 5568 5676 -445 809 167 0 36 chr11 35915853 35915991 -112867481 - FLAM_C SINE Alu 0 133 1 461 259 61 42 chr11 35915991 35916130 -112867342 + L1MC/D LINE L1 5676 5825 -296 21 0 0 0 chr11 35916162 35916183 -112867289 + AT_rich Low_complexity Low_complexity 1 21 0 610 172 9 0 chr11 35916198 35916314 -112867158 + L1MB7 LINE L1 5126 5242 -904 781 172 0 0 chr11 35916320 35916436 -112867036 + FLAM_C SINE Alu 3 118 -25 2113 148 18 33 chr11 35916467 35916539 -112866933 + L1MB7 LINE L1 5257 5329 -855 1511 170 60 32 chr11 35916539 35916822 -112866650 + AluJo SINE Alu 1 291 -21 2113 148 18 33 chr11 35916822 35917147 -112866325 + L1MB7 LINE L1 5329 5648 -536 2604 193 26 8 chr11 35917428 35917932 -112865540 + L1MB7 LINE L1 5656 6168 -16 233 270 90 11 chr11 35918853 35918942 -112864530 - MIR SINE MIR 0 262 167 4375 136 77 9 chr11 35919304 35920069 -112863403 - Tigger3(Golem) DNA MER2_type -60 2969 2153 1002 128 0 0 chr11 35920070 35920211 -112863261 - AluSg/x SINE Alu -5 307 167 516 109 185 0 chr11 35920211 35920330 -112863142 - Tigger3(Golem) DNA MER2_type -879 2150 213 938 122 44 72 chr11 35920362 35920452 -112863020 - L1MC/D LINE L1 -730 5603 5519 2212 135 0 0 chr11 35920452 35920763 -112862709 + AluSx SINE Alu 2 312 0 938 122 44 72 chr11 35920763 35920852 -112862620 - L1MC/D LINE L1 -814 5519 5429 201 313 76 28 chr11 35921856 35922000 -112861472 + L2 LINE L2 2891 3041 -231 212 296 0 28 chr11 35922089 35922160 -112861312 + L2 LINE L2 3178 3246 -26 309 293 167 37 chr11 35922193 35922408 -112861064 + MIR SINE MIR 20 262 0 3634 148 36 26 chr11 35922713 35923334 -112860138 + Cheshire DNA MER1_type 1751 2381 -39 2260 112 0 0 chr11 35923334 35923630 -112859842 + AluSx SINE Alu 1 296 -16 3634 148 36 26 chr11 35923630 35923671 -112859801 + Cheshire DNA MER1_type 2381 2420 0 488 91 0 0 chr11 35924108 35924174 -112859298 + Cheshire DNA MER1_type 2036 2101 -319 1878 157 0 0 chr11 35924473 35924784 -112858688 + AluSx SINE Alu 1 311 0 316 253 0 71 chr11 35924785 35924884 -112858588 - MIR SINE MIR -55 153 62 531 269 41 14 chr11 35925330 35925475 -112857997 - MIR SINE MIR -106 156 8 1749 125 0 104 chr11 35925550 35925887 -112857585 + AluY SINE Alu 1 302 -9 25 31 0 0 chr11 35926249 35926281 -112857191 + AT_rich Low_complexity Low_complexity 1 32 0 360 249 121 30 chr11 35926395 35926560 -112856912 + MIR SINE MIR 83 262 0 770 262 47 11 chr11 35926829 35927059 -112856413 + MIR SINE MIR 2 232 -30 206 290 187 19 chr11 35928214 35928321 -112855151 - MIR3 SINE MIR -54 154 30 1235 156 0 45 chr11 35929036 35929260 -112854212 + AluJo SINE Alu 87 300 -12 308 277 21 64 chr11 35930174 35930315 -112853157 + L1ME4a LINE L1 5982 6116 -5 24543 70 20 13 chr11 35930962 35934812 -112848660 + L1PA7 LINE L1 2283 6154 0 4105 146 38 34 chr11 35935023 35935280 -112848192 + Tigger2 DNA MER2_type 1 255 -2463 1651 151 54 0 chr11 35935280 35935558 -112847914 + AluJb SINE Alu 1 293 -19 4105 146 38 34 chr11 35935558 35936056 -112847416 + Tigger2 DNA MER2_type 255 759 -1959 1673 150 4 0 chr11 35936111 35936365 -112847107 + Tigger2 DNA MER2_type 2464 2718 0 306 211 29 0 chr11 35936365 35936469 -112847003 + (TA)n Simple_repeat Simple_repeat 2 108 0 864 225 39 0 chr11 35936630 35936812 -112846660 - MER5A DNA MER1_type 0 189 1 2347 118 36 38 chr11 35936984 35937349 -112846123 + THE1B LTR MaLR 1 364 0 2066 136 109 5 chr11 35937349 35937716 -112845756 + MSTA LTR MaLR 24 428 0 237 309 18 65 chr11 35937730 35937898 -112845574 - MIR SINE MIR -5 257 98 1638 238 149 37 chr11 35937904 35938467 -112845005 + MLT1E2 LTR MaLR 1 626 0 2181 103 7 17 chr11 35938468 35938768 -112844704 + AluSx SINE Alu 1 297 -15 304 267 117 42 chr11 35939028 35939148 -112844324 - MIR3 SINE MIR -15 193 65 1858 80 4 4 chr11 35939460 35939697 -112843775 - L1PA10 LINE L1 -19 6149 5913 643 102 0 59 chr11 35940549 35940667 -112842805 - AluSp/q SINE Alu 0 313 203 2269 89 7 0 chr11 35940769 35941061 -112842411 + AluSg SINE Alu 1 294 -16 360 0 0 0 chr11 35942370 35942410 -112841062 + (CA)n Simple_repeat Simple_repeat 2 41 0 290 234 56 28 chr11 35942417 35942524 -112840948 + MER54A LTR ERVL 484 593 -308 266 174 72 58 chr11 35942529 35942598 -112840874 + FRAM SINE Alu 43 112 -54 857 124 35 7 chr11 35942601 35942746 -112840726 + MER54B LTR ERVL 643 791 -2 526 329 167 48 chr11 35943306 35943945 -112839527 + L2 LINE L2 1977 2691 -623 359 321 44 7 chr11 35944040 35944243 -112839229 + MLT1J LTR MaLR 288 479 -32 1846 144 24 0 chr11 35944459 35944751 -112838721 + AluSx SINE Alu 1 299 -13 1819 192 93 0 chr11 35945040 35945373 -112838099 + MLT1A1 LTR MaLR 2 365 0 2420 84 0 0 chr11 35945401 35945699 -112837773 + AluY SINE Alu 2 299 -12 234 128 0 0 chr11 35947151 35947190 -112836282 + (TCC)n Simple_repeat Simple_repeat 1 39 0 834 168 0 0 chr11 35947477 35947602 -112835870 - FLAM_A SINE Alu -8 125 1 25 0 0 0 chr11 35947910 35947935 -112835537 + AT_rich Low_complexity Low_complexity 1 25 0 632 243 131 92 chr11 35947935 35948403 -112835069 - MLT1G LTR MaLR -42 548 22 1040 270 94 26 chr11 35948656 35949092 -112834380 + L2 LINE L2 2774 3235 -78 774 175 32 53 chr11 35949895 35950084 -112833388 + Charlie1 DNA MER1_type 2577 2761 0 322 257 9 53 chr11 35950085 35950198 -112833274 + L1MEc LINE L1 632 739 -5657 3520 233 99 12 chr11 35950208 35951327 -112832145 + L1MEc LINE L1 2426 3642 -2573 254 242 115 77 chr11 35952512 35952650 -112830822 + L1ME4a LINE L1 5901 6049 -72 2105 135 0 0 chr11 35952650 35952947 -112830525 - AluSx SINE Alu -15 297 1 254 242 115 77 chr11 35952947 35952990 -112830482 + L1ME4a LINE L1 6049 6089 -32 21 0 0 0 chr11 35953708 35953729 -112829743 + AT_rich Low_complexity Low_complexity 1 21 0 1819 161 3 16 chr11 35954495 35954800 -112828672 - AluJo SINE Alu -11 301 1 207 246 29 0 chr11 35955065 35955134 -112828338 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 0 0 0 chr11 35959525 35959546 -112823926 + AT_rich Low_complexity Low_complexity 1 21 0 2080 121 3 23 chr11 35960001 35960308 -112823164 - AluSx SINE Alu -11 301 1 1318 178 80 38 chr11 35961877 35962164 -112821308 - AluJo SINE Alu -13 299 1 937 140 104 133 chr11 35962505 35962582 -112820890 + AluJo SINE Alu 40 118 -194 300 27 0 0 chr11 35962582 35962619 -112820853 + (TAA)n Simple_repeat Simple_repeat 1 37 0 937 140 104 133 chr11 35962619 35962820 -112820652 + AluJo SINE Alu 118 310 -2 1366 224 14 3 chr11 35962825 35963111 -112820361 + AluJb SINE Alu 11 299 -13 23 0 0 0 chr11 35964054 35964077 -112819395 + AT_rich Low_complexity Low_complexity 1 23 0 893 288 81 32 chr11 35964859 35965578 -112817894 + L1MEc LINE L1 783 1565 -4831 1954 137 7 13 chr11 35965578 35965877 -112817595 + AluJo SINE Alu 1 297 -15 893 288 81 32 chr11 35965877 35966147 -112817325 + L1MEc LINE L1 1565 1820 -4576 404 269 24 12 chr11 35966162 35966753 -112816719 + L1MEc LINE L1 1880 2552 -3663 2815 166 94 25 chr11 35966804 35967411 -112816061 - MLT1E1 LTR MaLR -5 649 1 305 266 40 40 chr11 35967416 35967593 -112815879 + L1MEc LINE L1 2610 2786 -3429 4437 235 70 29 chr11 35967696 35969804 -112813668 + L1MEc LINE L1 2775 6210 -29 1949 155 31 75 chr11 35969821 35970023 -112813449 + L1MD3 LINE L1 7497 7706 -289 2056 123 40 7 chr11 35970023 35970324 -112813148 + AluSx SINE Alu 2 312 0 1949 155 31 75 chr11 35970324 35970643 -112812829 + L1MD3 LINE L1 7706 7995 0 487 295 45 19 chr11 35970888 35970935 -112812537 + MIR SINE MIR 28 72 -190 2532 130 36 7 chr11 35970935 35971351 -112812121 + MSTA LTR MaLR 1 428 0 487 295 45 19 chr11 35971351 35971459 -112812013 + MIR SINE MIR 72 187 -75 384 309 72 26 chr11 35971548 35971656 -112811816 + MIR3 SINE MIR 36 154 -54 1140 209 5 5 chr11 35971656 35971876 -112811596 + MER58A DNA MER1_type 4 223 -1 384 309 72 26 chr11 35971876 35971919 -112811553 + MIR3 SINE MIR 154 194 -14 240 111 0 0 chr11 35972319 35972355 -112811117 + (A)n Simple_repeat Simple_repeat 1 36 0 478 279 72 58 chr11 35972544 35972624 -112810848 + MIR SINE MIR 17 94 -168 2463 46 0 0 chr11 35972624 35972932 -112810540 - AluY SINE Alu 0 308 1 478 279 72 58 chr11 35972932 35973058 -112810414 + MIR SINE MIR 94 227 -35 211 324 40 27 chr11 35973609 35973683 -112809789 + MIR SINE MIR 1 75 -187 224 279 98 25 chr11 35975049 35975171 -112808301 - L2 LINE L2 -819 2495 2365 180 0 0 0 chr11 35975188 35975208 -112808264 + (T)n Simple_repeat Simple_repeat 1 20 0 404 270 205 48 chr11 35975238 35975531 -112807941 - HAL1 LINE L1 0 2507 2169 304 303 91 8 chr11 35975592 35975724 -112807748 - HAL1b LINE L1 -438 910 768 411 332 94 23 chr11 35975746 35976053 -112807419 - L2 LINE L2 -994 2320 1992 22 35 0 0 chr11 35976589 35976618 -112806854 + AT_rich Low_complexity Low_complexity 1 29 0 298 242 0 88 chr11 35977278 35977369 -112806103 - MER5B DNA MER1_type -76 102 20 337 275 185 51 chr11 35977681 35978142 -112805330 + L2 LINE L2 2715 3248 -24 229 279 104 60 chr11 35978370 35978571 -112804901 - L2 LINE L2 -423 2891 2682 208 113 38 57 chr11 35979857 35979910 -112803562 + C-rich Low_complexity Low_complexity 2 53 0 1027 162 21 30 chr11 35981659 35981893 -112801579 - MER96B DNA MER1_type? 0 417 186 2002 148 7 0 chr11 35981931 35982222 -112801250 - AluSq SINE Alu -20 293 1 1646 169 30 20 chr11 35982738 35983033 -112800439 + AluJb SINE Alu 1 298 -14 743 204 0 0 chr11 35984939 35985071 -112798401 - FLAM_A SINE Alu -1 132 1 629 260 96 82 chr11 35985098 35985575 -112797897 + LTR33 LTR ERVL 36 519 -2 1688 246 32 41 chr11 35986712 35987180 -112796292 - LTR16B LTR ERVL 0 464 1 2052 134 73 6 chr11 35987815 35988157 -112795315 + MLT1A1 LTR MaLR 1 365 0 371 264 146 33 chr11 35988158 35988370 -112795102 - LTR50 LTR ERVL -165 630 395 378 108 0 0 chr11 35988430 35988495 -112794977 + (CA)n Simple_repeat Simple_repeat 1 65 0 2127 124 0 7 chr11 35989102 35989400 -112794072 - AluSx SINE Alu -16 296 1 478 226 0 15 chr11 35990199 35990332 -112793140 + L1 LINE L1 4882 5012 -1134 367 103 0 29 chr11 35990368 35990436 -112793036 + (GAAAA)n Simple_repeat Simple_repeat 4 69 0 243 170 0 0 chr11 35990436 35990489 -112792983 + L1 LINE L1 5002 5054 -1092 218 105 26 0 chr11 35990506 35990544 -112792928 + GA-rich Low_complexity Low_complexity 2 40 0 496 203 41 0 chr11 35990545 35990668 -112792804 + L1 LINE L1 5040 5167 -979 976 107 0 0 chr11 35990691 35990850 -112792622 + L1 LINE L1 5151 5309 -837 256 114 0 0 chr11 35990868 35990912 -112792560 + LOR1a LTR ERV1 240 283 -214 817 135 23 0 chr11 35990996 35991129 -112792343 + FLAM_C SINE Alu 1 136 -7 432 171 0 0 chr11 35991142 35991212 -112792260 + AluJ/FRAM SINE Alu 228 297 -15 21 0 0 0 chr11 35991563 35991584 -112791888 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 35991621 35991644 -112791828 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1142 154 68 14 chr11 35991746 35991966 -112791506 + L1PB4 LINE L1 5922 6153 -3 38 0 0 0 chr11 35991987 35992025 -112791447 + AT_rich Low_complexity Low_complexity 1 38 0 2784 78 18 13 chr11 35993553 35993951 -112789521 + L1PA8 LINE L1 5771 6170 -2 2304 123 0 0 chr11 35994251 35994561 -112788911 + AluSx SINE Alu 1 310 -2 280 288 89 29 chr11 35994628 35994909 -112788563 - L1ME LINE L1 -262 5859 5562 474 297 11 63 chr11 35994942 35995228 -112788244 + L1M4 LINE L1 2770 3040 -3106 195 129 0 0 chr11 35995377 35995408 -112788064 + (TG)n Simple_repeat Simple_repeat 1 31 0 230 342 9 105 chr11 35995448 35995676 -112787796 - L2 LINE L2 -110 3162 2957 210 71 0 0 chr11 35996676 35996704 -112786768 + (T)n Simple_repeat Simple_repeat 1 28 0 426 304 70 6 chr11 35996735 35996893 -112786579 + MIR3 SINE MIR 35 202 -6 2584 122 49 5 chr11 35997263 35997673 -112785799 + MSTA LTR MaLR 1 428 0 204 358 61 40 chr11 35997950 35998098 -112785374 - MIR3 SINE MIR -55 153 3 716 167 81 54 chr11 35998200 35998325 -112785147 + L1M4 LINE L1 4622 4757 -1389 2162 120 0 38 chr11 35998325 35998641 -112784831 + AluSx SINE Alu 1 304 -8 716 167 81 54 chr11 35998641 35998736 -112784736 + L1M4 LINE L1 4757 4848 -1298 347 202 131 0 chr11 35998799 35998811 -112784661 - L1MA10 LINE L1 -4 6330 6319 889 219 94 23 chr11 35998811 35999076 -112784396 - L1ME1 LINE L1 -7 6159 5876 * 1242 280 48 40 chr11 35999069 35999358 -112784114 + L1M4 LINE L1 4032 4317 -1829 2009 138 7 17 chr11 35999358 35999656 -112783816 + AluSx SINE Alu 1 295 -17 1242 280 48 40 chr11 35999656 36000260 -112783212 + L1M4 LINE L1 4317 4932 -1214 * 2524 200 54 16 chr11 36000250 36001010 -112782462 + L1MDa LINE L1 2438 3220 -3320 4717 127 12 38 chr11 36001012 36001154 -112782318 + L1MA2 LINE L1 4935 5079 -1225 1967 138 0 45 chr11 36001154 36001466 -112782006 - AluJb SINE Alu -14 298 1 4717 127 12 38 chr11 36001466 36002476 -112780996 + L1MA2 LINE L1 5079 6055 -249 602 224 89 4 chr11 36002472 36002753 -112780719 + L1MDa LINE L1 3445 3749 -2791 * 1150 72 0 0 chr11 36002753 36002891 -112780581 + AluY SINE Alu 1 138 -173 5562 180 44 90 chr11 36002918 36004389 -112779083 + L1MB7 LINE L1 3739 5276 -1302 594 119 20 0 chr11 36004389 36004490 -112778982 + L1PB2 LINE L1 6048 6150 -1 5562 180 44 90 chr11 36004490 36005064 -112778408 + L1MB7 LINE L1 5276 5875 -703 1497 185 64 20 chr11 36005064 36005362 -112778110 + AluJo SINE Alu 1 311 -1 5562 180 44 90 chr11 36005362 36006161 -112777311 + L1MB7 LINE L1 5875 6449 -129 2357 82 7 3 chr11 36006161 36006466 -112777006 + AluSq SINE Alu 1 306 -7 5562 180 44 90 chr11 36006466 36006536 -112776936 + L1MB7 LINE L1 6449 6521 -57 2520 186 73 30 chr11 36006756 36007397 -112776075 - LTR65 LTR ERV1 0 669 1 749 104 26 17 chr11 36009052 36009167 -112774305 + FLAM_C SINE Alu 1 116 -17 240 163 0 0 chr11 36009459 36009502 -112773970 + (TAA)n Simple_repeat Simple_repeat 3 45 0 289 250 109 0 chr11 36009661 36009753 -112773719 - L2 LINE L2 -6 3307 3206 219 262 48 39 chr11 36009880 36009983 -112773489 + MIR3 SINE MIR 96 199 -9 324 0 0 0 chr11 36010230 36010266 -112773206 + (CA)n Simple_repeat Simple_repeat 2 37 0 432 214 20 20 chr11 36010967 36011065 -112772407 - MER5A DNA MER1_type -83 106 9 977 154 6 0 chr11 36011351 36011507 -112771965 - AluJo SINE Alu 0 312 156 967 156 6 24 chr11 36011553 36011720 -112771752 - AluJo SINE Alu -148 164 1 372 272 117 99 chr11 36011914 36012197 -112771275 - L2 LINE L2 0 3272 2985 242 274 48 60 chr11 36012729 36012813 -112770659 - MIR SINE MIR -83 125 43 1966 133 14 111 chr11 36012947 36013369 -112770103 - LOR1b LTR ERV1 0 461 81 1653 72 36 84 chr11 36063382 36063632 -112719840 + AluSg SINE Alu 63 300 -10 648 277 121 9 chr11 36066061 36066292 -112717180 - MIR SINE MIR 0 262 6 384 273 114 63 chr11 36066607 36067003 -112716469 + L1MEd LINE L1 420 835 -5284 2020 71 0 8 chr11 36067410 36067662 -112715810 - AluY SINE Alu -20 291 42 1380 136 30 30 chr11 36067879 36067937 -112715535 + MER46A DNA MER2_type 1 58 -2673 2011 115 0 30 chr11 36067937 36068242 -112715230 - AluJb SINE Alu -16 296 1 1380 136 30 30 chr11 36068242 36068419 -112715053 + MER46A DNA MER2_type 57 236 0 1844 136 35 3 chr11 36068849 36069135 -112714337 - AluSx SINE Alu -17 295 1 847 159 0 0 chr11 36069394 36069526 -112713946 - FLAM_C SINE Alu 0 133 2 2227 100 0 3 chr11 36069831 36070120 -112713352 - AluSq SINE Alu -17 296 9 23 0 0 0 chr11 36070503 36070526 -112712946 + AT_rich Low_complexity Low_complexity 1 23 0 1541 172 48 7 chr11 36070526 36070799 -112712673 - AluJo SINE Alu -28 284 1 180 261 101 0 chr11 36072049 36072118 -112711354 - L2 LINE L2 -675 2639 2564 496 139 0 0 chr11 36072414 36072486 -112710986 + AluJ/FLAM SINE Alu 1 72 -240 234 0 0 0 chr11 36072500 36072526 -112710946 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2108 112 14 10 chr11 36073284 36073580 -112709892 - AluSx SINE Alu -5 307 11 509 237 0 0 chr11 36073792 36073885 -112709587 + FLAM_A SINE Alu 5 97 -45 532 282 125 44 chr11 36074301 36074709 -112708763 + L1ME2 LINE L1 5510 5950 -214 1818 174 0 13 chr11 36074725 36075030 -112708442 + AluJo SINE Alu 1 301 -11 2426 90 3 0 chr11 36075175 36075476 -112707996 - AluSx SINE Alu -9 303 2 1909 123 3 91 chr11 36075490 36075832 -112707640 - AluSx SINE Alu 0 312 1 229 211 0 0 chr11 36075843 36075895 -112707577 + A-rich Low_complexity Low_complexity 1 52 0 1801 170 0 41 chr11 36075958 36076275 -112707197 - AluJo SINE Alu -8 304 1 180 320 26 26 chr11 36076592 36076670 -112706802 + MIR SINE MIR 66 143 -119 363 194 71 20 chr11 36076681 36076779 -112706693 + MER5A DNA MER1_type 37 139 -50 * 431 212 71 0 chr11 36076695 36076780 -112706692 - MER5A DNA MER1_type -38 151 61 2464 87 0 3 chr11 36076896 36077206 -112706266 - AluSg SINE Alu -1 309 1 1673 166 58 0 chr11 36077214 36077540 -112705932 + MER47A DNA MER2_type 22 366 0 3396 172 151 67 chr11 36077700 36078181 -112705291 + L1MB7 LINE L1 4072 4511 -1635 4275 61 44 10 chr11 36078181 36078768 -112704704 + L1PB1 LINE L1 5538 6144 -7 3396 172 151 67 chr11 36078768 36078953 -112704519 + L1MB7 LINE L1 4511 4679 -1467 2316 86 13 7 chr11 36078953 36079257 -112704215 - AluSg SINE Alu -4 306 1 3396 172 151 67 chr11 36079257 36079789 -112703683 + L1MB7 LINE L1 4679 5372 -774 403 168 10 10 chr11 36079797 36079898 -112703574 + CT-rich Low_complexity Low_complexity 3 103 0 1392 180 0 4 chr11 36079950 36080178 -112703294 + AluJb SINE Alu 86 312 0 3047 191 77 12 chr11 36080179 36080919 -112702553 + L1MB7 LINE L1 5356 6143 -41 189 132 0 0 chr11 36081600 36081638 -112701834 + (T)n Simple_repeat Simple_repeat 1 38 0 944 77 0 0 chr11 36081644 36081761 -112701711 - AluSq/x SINE Alu -196 117 1 1649 165 40 7 chr11 36081775 36082047 -112701425 - AluJo SINE Alu -31 281 1 2043 126 0 3 chr11 36082459 36082772 -112700700 + AluY SINE Alu 1 312 0 2289 85 17 0 chr11 36082876 36083171 -112700301 - AluSq SINE Alu -13 300 1 2290 104 0 0 chr11 36083182 36083471 -112700001 - AluSq SINE Alu -24 289 1 2414 64 3 0 chr11 36083842 36084140 -112699332 - AluSc SINE Alu -10 299 1 320 267 160 38 chr11 36084468 36084599 -112698873 + L2 LINE L2 3124 3270 -2 2063 136 0 28 chr11 36084934 36085251 -112698221 - AluSx SINE Alu -4 308 1 2020 146 0 3 chr11 36085280 36085582 -112697890 - AluSx SINE Alu -5 307 7 38 0 0 0 chr11 36085639 36085677 -112697795 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr11 36085685 36085712 -112697760 + AT_rich Low_complexity Low_complexity 1 27 0 1806 142 58 3 chr11 36085836 36086131 -112697341 + AluJb SINE Alu 1 311 -1 553 287 86 45 chr11 36086610 36087120 -112696352 - L1ME4a LINE L1 -97 6024 5497 2067 127 0 10 chr11 36087191 36087490 -112695982 - AluSx SINE Alu -16 296 1 21 0 0 0 chr11 36087492 36087513 -112695959 + AT_rich Low_complexity Low_complexity 1 21 0 539 298 104 27 chr11 36087902 36088201 -112695271 + L2 LINE L2 2990 3311 -2 2286 98 0 19 chr11 36088425 36088732 -112694740 - AluSg SINE Alu -1 309 9 26 0 0 0 chr11 36088757 36088783 -112694689 + AT_rich Low_complexity Low_complexity 1 26 0 383 359 180 11 chr11 36088877 36089239 -112694233 - L2 LINE L2 -737 2577 2155 2206 106 0 3 chr11 36090065 36090348 -112693124 + AluSq SINE Alu 1 282 -31 378 0 0 0 chr11 36090478 36090520 -112692952 + (TA)n Simple_repeat Simple_repeat 2 43 0 2305 85 3 26 chr11 36090520 36090826 -112692646 - AluSc SINE Alu -10 299 1 373 168 56 56 chr11 36091229 36091354 -112692118 - L1ME4a LINE L1 0 6121 5997 678 140 22 37 chr11 36091383 36091519 -112691953 - AluJb SINE Alu -178 134 1 23 54 0 0 chr11 36091525 36091562 -112691910 + AT_rich Low_complexity Low_complexity 1 37 0 2117 98 0 14 chr11 36091655 36091965 -112691507 + AluY SINE Alu 1 306 0 1632 168 26 23 chr11 36091967 36092097 -112691375 + AluJo SINE Alu 1 129 -183 2196 130 3 3 chr11 36092097 36092404 -112691068 + AluSx SINE Alu 1 307 -5 1632 168 26 23 chr11 36092404 36092582 -112690890 + AluJo SINE Alu 129 310 -2 580 256 118 0 chr11 36092719 36092930 -112690542 - L1MC4 LINE L1 0 8042 7807 945 170 32 46 chr11 36093094 36093312 -112690160 - MER20 DNA MER1_type -4 215 1 476 250 37 37 chr11 36093357 36093521 -112689951 - MIR SINE MIR -1 261 98 2054 112 14 0 chr11 36093593 36093880 -112689592 - AluSg SINE Alu -19 291 1 487 250 151 48 chr11 36093967 36094259 -112689213 + L1ME LINE L1 5502 5823 -298 235 233 33 17 chr11 36094499 36094559 -112688913 - MER66B LTR ERV1 -141 345 285 2278 112 3 6 chr11 36096152 36096465 -112687007 + AluSx SINE Alu 1 312 0 1786 159 10 17 chr11 36096878 36097173 -112686299 - AluJb SINE Alu -19 293 1 1616 249 71 57 chr11 36097602 36098220 -112685252 + L1ME LINE L1 1 627 -5443 828 176 14 0 chr11 36098229 36098371 -112685101 + FRAM SINE Alu 20 163 -13 1111 211 84 54 chr11 36098394 36098986 -112684486 + L1ME LINE L1 628 1220 -4860 1065 117 0 155 chr11 36098986 36099199 -112684273 + AluSx SINE Alu 1 180 -132 524 254 81 48 chr11 36100593 36100802 -112682670 - MIR SINE MIR -34 228 13 1671 149 82 3 chr11 36100843 36101125 -112682347 - AluJb SINE Alu -8 304 1 268 237 140 11 chr11 36101269 36101362 -112682110 - Charlie7 DNA MER1_type -2 2610 2506 1408 128 20 0 chr11 36101428 36101632 -112681840 + AluJb SINE Alu 87 294 -18 2246 97 28 0 chr11 36102415 36102705 -112680767 + AluSq SINE Alu 1 298 -15 598 245 122 21 chr11 36102906 36103094 -112680378 - MIR SINE MIR -16 246 40 1403 167 61 19 chr11 36103307 36103571 -112679901 - AluJo SINE Alu -7 305 31 2241 123 0 7 chr11 36103930 36104240 -112679232 + AluSg SINE Alu 1 308 -2 1567 186 16 29 chr11 36104294 36104606 -112678866 + AluJo SINE Alu 5 312 0 538 315 155 59 chr11 36105283 36105754 -112677718 + L2 LINE L2 1716 2140 -1174 2197 129 0 0 chr11 36105754 36106048 -112677424 - AluSx SINE Alu -16 296 3 538 315 155 59 chr11 36106048 36106129 -112677343 + L2 LINE L2 2140 2212 -1102 3576 185 66 22 chr11 36106129 36107020 -112676452 - MER63C DNA MER1_type 0 930 1 538 315 155 59 chr11 36107020 36107181 -112676291 + L2 LINE L2 2212 2499 -815 1562 269 141 16 chr11 36108037 36108867 -112674605 - L2 LINE L2 -2 3311 2369 2359 92 10 0 chr11 36109016 36109310 -112674162 + AluSq SINE Alu 1 297 -16 913 202 0 23 chr11 36109979 36110152 -112673320 - AluJb SINE Alu -15 297 129 354 202 85 47 chr11 36110449 36110578 -112672894 - L1ME4a LINE L1 -46 6075 5942 671 277 102 3 chr11 36110639 36110865 -112672607 + MIR SINE MIR 3 245 -17 26 0 0 0 chr11 36111060 36111086 -112672386 + AT_rich Low_complexity Low_complexity 1 26 0 2390 74 3 0 chr11 36111553 36111849 -112671623 + AluSp SINE Alu 1 297 -16 21 36 0 0 chr11 36111931 36111959 -112671513 + AT_rich Low_complexity Low_complexity 1 28 0 514 257 193 9 chr11 36111975 36112067 -112671405 - MIR SINE MIR -2 260 186 2119 100 10 3 chr11 36112067 36112366 -112671106 - AluSg SINE Alu -9 301 1 514 257 193 9 chr11 36112366 36112491 -112670981 - MIR SINE MIR -76 186 3 661 266 100 64 chr11 36113868 36114081 -112669391 + L1ME3A LINE L1 5329 5533 -637 2134 101 0 23 chr11 36114081 36114389 -112669083 + AluSg SINE Alu 2 302 -8 661 266 100 64 chr11 36114389 36114923 -112668549 + L1ME3A LINE L1 5533 6110 -60 236 257 149 0 chr11 36114942 36115016 -112668456 - L2 LINE L2 0 3313 3229 2447 145 214 20 chr11 36115070 36115616 -112667856 - MER39B LTR ERV1 -1 652 1 1739 132 45 0 chr11 36115724 36116011 -112667461 + AluSx SINE Alu 1 300 -12 421 235 217 0 chr11 36116269 36116384 -112667088 - MIR SINE MIR -13 249 110 825 235 125 28 chr11 36116869 36117158 -112666314 + L2 LINE L2 2992 3308 -5 2168 87 0 0 chr11 36117539 36117826 -112665646 - AluSq SINE Alu -26 287 1 668 123 38 0 chr11 36117847 36117953 -112665519 + L1PA8 LINE L1 6050 6159 -13 2218 85 0 7 chr11 36120896 36121203 -112662269 - AluSx SINE Alu -7 305 1 207 0 0 0 chr11 36121207 36121230 -112662242 + (T)n Simple_repeat Simple_repeat 1 23 0 237 130 0 22 chr11 36121287 36121333 -112662139 - MLT1K LTR MaLR -30 558 514 2252 92 0 0 chr11 36121337 36121640 -112661832 + AluSx SINE Alu 8 310 -2 574 250 62 67 chr11 36121808 36122032 -112661440 - L2 LINE L2 -6 3307 3085 1824 138 7 0 chr11 36122375 36122651 -112660821 + AluJo SINE Alu 22 299 -13 1038 172 30 0 chr11 36122875 36123044 -112660428 + MER2 DNA MER2_type 1 174 -171 358 152 136 0 chr11 36123098 36123164 -112660308 + MER2 DNA MER2_type 270 344 -1 27 0 0 0 chr11 36123291 36123318 -112660154 + AT_rich Low_complexity Low_complexity 1 27 0 304 129 71 57 chr11 36123489 36123559 -112659913 - L1ME4a LINE L1 0 6121 6051 465 215 180 31 chr11 36123618 36123846 -112659626 - L1ME4a LINE L1 -207 5914 5653 339 264 35 76 chr11 36123975 36124119 -112659353 - L1ME4a LINE L1 -708 5413 5274 22 70 0 0 chr11 36124134 36124177 -112659295 + AT_rich Low_complexity Low_complexity 1 43 0 236 245 19 47 chr11 36124233 36124339 -112659133 - L1P LINE L1 -1134 5012 4910 1677 120 75 0 chr11 36124539 36124805 -112658667 - AluSx SINE Alu -13 299 14 2091 95 7 0 chr11 36125394 36125690 -112657782 + AluSp SINE Alu 1 298 -15 836 157 0 29 chr11 36126011 36126151 -112657321 - AluJo SINE Alu -175 137 2 621 234 83 102 chr11 36126576 36126740 -112656732 - L2 LINE L2 -404 2910 2751 2100 117 13 0 chr11 36126740 36127048 -112656424 - AluSx SINE Alu 0 312 1 621 234 83 102 chr11 36127048 36127148 -112656324 - L2 LINE L2 -563 2751 2651 831 240 180 31 chr11 36127310 36127662 -112655810 + LTR16A LTR ERVL 47 450 0 1237 209 45 150 chr11 36127662 36128160 -112655312 + L2 LINE L2 2691 3240 -73 180 0 0 0 chr11 36128160 36128180 -112655292 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2029 103 0 0 chr11 36128184 36128457 -112655015 - AluSg SINE Alu -37 273 1 1237 209 45 150 chr11 36128457 36128651 -112654821 + L2 LINE L2 3243 3313 0 195 272 226 23 chr11 36128661 36128878 -112654594 - L2 LINE L2 -1071 2243 1983 469 125 0 50 chr11 36128892 36128972 -112654500 + AluJb SINE Alu 86 161 -151 223 338 45 20 chr11 36129037 36129235 -112654237 - L2 LINE L2 -1431 1883 1681 325 183 150 100 chr11 36129281 36129401 -112654071 + MER94 DNA DNA 8 133 -1 216 0 0 0 chr11 36129504 36129528 -112653944 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2067 95 17 14 chr11 36129806 36130100 -112653372 - AluSq SINE Alu -18 295 1 2070 107 0 22 chr11 36130238 36130556 -112652916 + AluSx SINE Alu 1 311 -1 528 221 44 44 chr11 36130771 36130929 -112652543 + MIR SINE MIR 49 206 -56 306 0 0 0 chr11 36131812 36131846 -112651626 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 335 301 90 38 chr11 36131846 36131979 -112651493 - L2 LINE L2 -13 3300 3161 31 88 0 0 chr11 36132253 36132333 -112651139 + AT_rich Low_complexity Low_complexity 1 80 0 1852 101 0 4 chr11 36132949 36133207 -112650265 + AluSg SINE Alu 26 282 -28 240 35 0 0 chr11 36133211 36133240 -112650232 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2561 36 0 0 chr11 36133736 36134037 -112649435 - AluY SINE Alu -10 301 1 543 293 83 15 chr11 36134471 36134676 -112648796 + MIR SINE MIR 37 255 -7 2164 75 4 7 chr11 36134679 36134960 -112648512 + AluSg SINE Alu 1 280 -30 1361 171 17 38 chr11 36135080 36135367 -112648105 - AluJo SINE Alu -14 298 18 1015 103 35 14 chr11 36135392 36135537 -112647935 - THE1B LTR MaLR -216 148 1 440 75 75 0 chr11 36136439 36136506 -112646966 + L1PA16 LINE L1 6086 6157 -9 214 163 47 0 chr11 36136521 36136564 -112646908 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 2081 125 3 0 chr11 36136598 36136903 -112646569 + AluSx SINE Alu 7 312 0 315 0 0 0 chr11 36136903 36136938 -112646534 + (TA)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr11 36136937 36136971 -112646501 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 266 293 42 61 chr11 36136975 36137187 -112646285 - L1ME3 LINE L1 -210 5952 5745 588 245 95 40 chr11 36137208 36137408 -112646064 - MIR SINE MIR -36 226 16 2200 76 36 3 chr11 36137564 36137866 -112645606 - AluSx SINE Alu 0 312 1 2543 45 0 0 chr11 36138231 36138542 -112644930 - AluY SINE Alu 0 311 1 1800 137 10 10 chr11 36138543 36138836 -112644636 - AluSx SINE Alu -19 293 1 249 194 11 32 chr11 36138909 36139002 -112644470 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 284 283 151 0 chr11 36139559 36139665 -112643807 + MIR SINE MIR 46 167 -95 245 277 0 0 chr11 36139713 36139760 -112643712 - L2 LINE L2 -92 3180 3134 579 283 118 0 chr11 36140191 36140403 -112643069 - MER112 DNA MER1_type -7 253 17 2270 90 0 0 chr11 36140449 36140748 -112642724 - AluSq SINE Alu -12 301 3 413 154 287 49 chr11 36141129 36141272 -112642200 + MER69A DNA AcHobo 1 177 0 2171 113 0 0 chr11 36141575 36141875 -112641597 + AluSx SINE Alu 1 300 -12 2150 113 0 0 chr11 36142128 36142451 -112641021 + AluSx SINE Alu 1 312 0 361 252 10 68 chr11 36142692 36142795 -112640677 + MIR SINE MIR 11 107 -155 581 228 39 8 chr11 36143005 36143132 -112640340 - MER63 DNA MER1_type -76 760 4 377 127 16 32 chr11 36143134 36143197 -112640275 + MIR SINE MIR 119 180 -82 2171 85 0 0 chr11 36143358 36143641 -112639831 - AluSx SINE Alu -17 295 13 27 0 0 0 chr11 36144064 36144091 -112639381 + AT_rich Low_complexity Low_complexity 1 27 0 1594 176 0 41 chr11 36144602 36144774 -112638698 - AluJo SINE Alu -6 306 151 1895 152 0 0 chr11 36144774 36145070 -112638402 - AluSx SINE Alu -16 296 1 1594 176 0 41 chr11 36145070 36145216 -112638256 - AluJo SINE Alu -161 151 1 2253 83 3 10 chr11 36145753 36146054 -112637418 - AluSx SINE Alu -13 299 1 296 175 0 79 chr11 36146392 36146455 -112637017 + MSTC LTR MaLR 1 51 -377 911 163 15 82 chr11 36146758 36146814 -112636658 - MER5A DNA MER1_type -6 183 125 1754 167 3 0 chr11 36146814 36147114 -112636358 + AluJb SINE Alu 5 305 -7 911 163 15 82 chr11 36147114 36147253 -112636219 - MER5A DNA MER1_type -64 125 1 21 0 0 0 chr11 36147452 36147473 -112635999 + AT_rich Low_complexity Low_complexity 1 21 0 658 214 10 85 chr11 36150060 36150138 -112633334 + MER5A DNA MER1_type 1 83 -106 1879 133 0 31 chr11 36150138 36150460 -112633012 + AluJb SINE Alu 1 312 0 658 214 10 85 chr11 36150460 36150582 -112632890 + MER5A DNA MER1_type 83 186 -3 448 331 19 0 chr11 36151474 36151631 -112631841 + MIR3 SINE MIR 43 202 -6 611 264 31 0 chr11 36151699 36151862 -112631610 - LTR16A1 LTR ERVL 0 457 290 22 35 0 0 chr11 36152453 36152482 -112630990 + AT_rich Low_complexity Low_complexity 1 29 0 799 278 21 0 chr11 36153541 36153732 -112629740 - MIR SINE MIR -48 214 20 1637 158 43 4 chr11 36156013 36156291 -112627181 + AluJb SINE Alu 1 289 -23 1364 119 0 5 chr11 36156304 36156505 -112626967 - AluSq SINE Alu -11 302 103 249 33 0 0 chr11 36159142 36159172 -112624300 + (CCG)n Simple_repeat Simple_repeat 3 32 0 31 26 0 0 chr11 36159284 36159322 -112624150 + GC_rich Low_complexity Low_complexity 1 38 0 207 100 0 0 chr11 36159720 36159750 -112623722 + (T)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 36160862 36160903 -112622569 + (TG)n Simple_repeat Simple_repeat 2 42 0 1576 128 114 29 chr11 36160970 36161251 -112622221 + AluJo SINE Alu 1 305 -7 330 305 48 9 chr11 36161424 36161529 -112621943 + MIR SINE MIR 2 110 -152 557 209 68 68 chr11 36161552 36161642 -112621830 + MIR SINE MIR 31 124 -138 2021 74 0 87 chr11 36161642 36161980 -112621492 + AluSx SINE Alu 1 311 0 557 209 68 68 chr11 36161980 36162065 -112621407 + MIR SINE MIR 123 207 -55 209 268 14 56 chr11 36162099 36162170 -112621302 + MIR SINE MIR 194 261 -1 2181 95 0 7 chr11 36162417 36162723 -112620749 - AluSx SINE Alu -8 304 1 389 270 22 0 chr11 36163994 36164083 -112619389 + MIR3 SINE MIR 64 154 -54 224 280 47 65 chr11 36164135 36164242 -112619230 + MIR SINE MIR 156 260 -2 542 299 11 17 chr11 36164750 36164924 -112618548 + MIR SINE MIR 86 258 -4 2181 112 0 0 chr11 36164956 36165260 -112618212 + AluSq SINE Alu 1 304 -9 1346 259 67 44 chr11 36165564 36166091 -112617381 + L2 LINE L2 2770 3311 -2 766 306 57 4 chr11 36166391 36166639 -112616833 + MIR SINE MIR 2 262 0 2145 122 0 0 chr11 36167121 36167425 -112616047 - AluSx SINE Alu -4 308 5 263 270 144 45 chr11 36167699 36167810 -112615662 + MIR3 SINE MIR 87 208 0 606 314 92 4 chr11 36168039 36168278 -112615194 + MIR SINE MIR 3 262 0 2699 176 22 24 chr11 36168755 36169011 -112614461 + L1MB3 LINE L1 5016 5271 -912 1688 95 29 47 chr11 36169011 36169285 -112614187 + AluSx SINE Alu 1 269 -43 2699 176 22 24 chr11 36169285 36169815 -112613657 + L1MB3 LINE L1 5271 5795 -388 373 106 0 71 chr11 36169817 36169930 -112613542 + (TA)n Simple_repeat Simple_repeat 2 106 0 1728 180 54 11 chr11 36169934 36170307 -112613165 + L1MB3 LINE L1 5782 6170 -13 207 114 0 0 chr11 36171399 36171434 -112612038 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 775 259 98 13 chr11 36172285 36172521 -112610951 - MIR SINE MIR 0 262 7 420 278 102 40 chr11 36172603 36172779 -112610693 + L2 LINE L2 3034 3220 -93 411 307 53 13 chr11 36172856 36173006 -112610466 + MER117 DNA MER1_type 40 195 -2 184 261 0 62 chr11 36173222 36173287 -112610185 - L2 LINE L2 -214 3058 2998 * 491 308 59 14 chr11 36173284 36173505 -112609967 - MIR SINE MIR -15 247 17 2186 101 0 7 chr11 36175502 36175799 -112607673 - AluSq SINE Alu -18 295 1 1714 161 34 7 chr11 36177162 36177326 -112606146 - AluJb SINE Alu -12 300 123 199 53 26 26 chr11 36177326 36177364 -112606108 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1714 161 34 7 chr11 36177364 36177491 -112605981 - AluJb SINE Alu -189 123 1 1049 252 131 24 chr11 36177927 36178495 -112604977 + L2 LINE L2 2685 3313 0 405 304 96 0 chr11 36178493 36178628 -112604844 - MIR SINE MIR -95 167 20 * 220 274 86 68 chr11 36178639 36178756 -112604716 - L2 LINE L2 -850 2464 2346 428 274 49 0 chr11 36178808 36178910 -112604562 - L2 LINE L2 -25 3247 3141 238 297 110 17 chr11 36179021 36179139 -112604333 - L2 LINE L2 -3 3269 3141 385 317 16 0 chr11 36179158 36179281 -112604191 - L2 LINE L2 -1 3312 3188 3237 126 46 15 chr11 36179282 36179828 -112603644 + L1PB4 LINE L1 5507 6069 -87 433 248 0 0 chr11 36179857 36179958 -112603514 + L1PB4 LINE L1 6043 6143 -13 2046 124 10 0 chr11 36179963 36180269 -112603203 - AluSx SINE Alu -3 309 1 349 198 168 10 chr11 36180366 36180467 -112603005 - MIR SINE MIR -29 233 117 306 317 19 0 chr11 36180636 36180740 -112602732 + MIR SINE MIR 151 256 -6 423 38 0 0 chr11 36180964 36181017 -112602455 + (CA)n Simple_repeat Simple_repeat 2 54 0 473 319 31 12 chr11 36182099 36182262 -112601210 + MIR SINE MIR 47 212 -50 278 284 15 0 chr11 36182990 36183057 -112600415 + L2 LINE L2 3186 3253 -19 180 281 105 0 chr11 36184431 36184488 -112598984 - L2 LINE L2 -524 2790 2728 1938 125 7 7 chr11 36184769 36185072 -112598400 - AluSq SINE Alu -10 303 1 433 231 218 0 chr11 36185100 36185256 -112598216 + MIR SINE MIR 48 237 -25 21 0 0 0 chr11 36185298 36185319 -112598153 + AT_rich Low_complexity Low_complexity 1 21 0 283 133 44 0 chr11 36185992 36186037 -112597435 - L2 LINE L2 0 3272 3226 261 178 0 0 chr11 36186266 36186311 -112597161 + MIR3 SINE MIR 129 173 -35 961 175 13 61 chr11 36186614 36186842 -112596630 - AluJo SINE Alu -11 301 85 346 233 160 20 chr11 36186956 36187106 -112596366 + MIR3 SINE MIR 26 196 -12 653 261 14 21 chr11 36187644 36187786 -112595686 - MER91A DNA MER1_type 0 196 56 1029 123 19 95 chr11 36187887 36188016 -112595456 - MER3 DNA MER1_type 0 209 101 2189 113 0 0 chr11 36188016 36188326 -112595146 + AluSx SINE Alu 1 310 -2 1029 123 19 95 chr11 36188326 36188407 -112595065 - MER3 DNA MER1_type -108 101 15 290 282 94 79 chr11 36188569 36188846 -112594626 + L2 LINE L2 2935 3215 -57 321 301 55 20 chr11 36189038 36189184 -112594288 - MIR SINE MIR -89 173 23 576 309 5 48 chr11 36190537 36190744 -112592728 + MIR SINE MIR 2 199 -63 2008 120 0 16 chr11 36190965 36191281 -112592191 + AluSx SINE Alu 1 311 -1 538 291 27 7 chr11 36191618 36191766 -112591706 + MLT1K LTR MaLR 69 219 -369 839 229 68 44 chr11 36191779 36192028 -112591444 + MLT1K LTR MaLR 330 584 -4 542 15 15 0 chr11 36192339 36192406 -112591066 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 698 319 75 12 chr11 36192617 36192962 -112590510 - MLT1J1 LTR MaLR 0 446 80 820 147 89 13 chr11 36192966 36193123 -112590349 + FRAM SINE Alu 1 168 -8 412 204 11 34 chr11 36193125 36193213 -112590259 - MLT1J1 LTR MaLR -360 86 1 198 118 0 0 chr11 36194823 36194857 -112588615 + (TG)n Simple_repeat Simple_repeat 1 34 0 515 286 54 0 chr11 36195089 36195236 -112588236 - L2 LINE L2 -1 3312 3158 2540 97 102 10 chr11 36195255 36195646 -112587826 + MSTA LTR MaLR 1 427 -1 416 269 25 17 chr11 36195650 36195769 -112587703 - L2 LINE L2 -7 3306 3187 323 268 73 49 chr11 36196776 36196940 -112586532 - MIR SINE MIR -56 206 39 698 224 64 65 chr11 36197043 36197289 -112586183 + MIR SINE MIR 2 241 -21 266 261 254 29 chr11 36197369 36197676 -112585796 - L1ME4a LINE L1 -39 6082 5707 2093 109 3 0 chr11 36197676 36197970 -112585502 + AluSq SINE Alu 13 307 -6 30 0 0 0 chr11 36197974 36198004 -112585468 + AT_rich Low_complexity Low_complexity 1 30 0 302 125 0 0 chr11 36198004 36198044 -112585428 - Alu SINE Alu -263 40 1 594 267 35 23 chr11 36198045 36198217 -112585255 + L1ME3A LINE L1 5478 5651 -511 1408 213 54 30 chr11 36198222 36198405 -112585067 - MER58B DNA MER1_type -2079 341 145 1831 144 0 29 chr11 36198405 36198718 -112584754 - AluJb SINE Alu -8 304 1 1408 213 54 30 chr11 36198718 36198867 -112584605 - MER58B DNA MER1_type -2275 145 1 573 274 51 29 chr11 36198880 36199055 -112584417 + MER5A DNA MER1_type 9 187 -2 486 224 60 101 chr11 36199074 36199305 -112584167 + L1ME3A LINE L1 5665 5854 -310 1451 159 4 12 chr11 36199305 36199557 -112583915 + AluJo SINE Alu 42 291 -21 486 224 60 101 chr11 36199557 36199645 -112583827 + L1ME3A LINE L1 5854 5944 -220 601 224 54 54 chr11 36199709 36199914 -112583558 + L1ME3A LINE L1 5965 6169 -1 609 242 174 11 chr11 36200659 36200849 -112582623 + MLT1J LTR MaLR 22 242 -269 1565 166 69 0 chr11 36200925 36201202 -112582270 - AluJb SINE Alu -16 296 1 231 36 0 0 chr11 36201222 36201250 -112582222 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 359 230 0 0 chr11 36201250 36201324 -112582148 + MLT1J LTR MaLR 438 511 0 225 254 0 0 chr11 36201336 36201391 -112582081 + L1ME4a LINE L1 5718 5772 -349 337 272 52 108 chr11 36201405 36201637 -112581835 - L2 LINE L2 0 3313 3095 183 315 27 0 chr11 36201738 36201811 -112581661 + L2 LINE L2 3239 3313 0 315 205 0 13 chr11 36201830 36201908 -112581564 + L1ME4a LINE L1 6044 6120 -1 249 169 17 34 chr11 36202766 36202825 -112580647 - MIR SINE MIR -89 173 116 2012 191 54 54 chr11 36202976 36203022 -112580450 + MLT1D LTR MaLR 1 46 -459 2412 53 0 7 chr11 36203022 36203322 -112580150 + AluY SINE Alu 1 298 -13 2012 191 54 54 chr11 36203322 36203779 -112579693 + MLT1D LTR MaLR 45 504 -1 1656 171 0 16 chr11 36204082 36204386 -112579086 + AluJb SINE Alu 2 300 -12 293 231 10 106 chr11 36204589 36204627 -112578845 + MIR SINE MIR 168 208 -54 2151 112 0 6 chr11 36204627 36204940 -112578532 + AluSx SINE Alu 1 311 -1 293 231 10 106 chr11 36204940 36205005 -112578467 + MIR SINE MIR 208 261 -1 637 186 211 0 chr11 36205076 36205232 -112578240 - MER5A DNA MER1_type 0 189 1 483 190 13 0 chr11 36205261 36205340 -112578132 + L2 LINE L2 3234 3313 0 738 233 116 23 chr11 36206863 36206973 -112576499 + MIR SINE MIR 28 126 -136 2616 87 34 14 chr11 36206973 36207330 -112576142 + THE1B LTR MaLR 1 364 0 738 233 116 23 chr11 36207330 36207434 -112576038 + MIR SINE MIR 126 262 0 291 345 118 0 chr11 36207509 36207619 -112575853 - MIR3 SINE MIR -15 193 71 551 243 38 47 chr11 36208073 36208278 -112575194 - L1MC5 LINE L1 -48 7913 7709 1982 96 10 10 chr11 36208278 36208569 -112574903 - AluSg SINE Alu -19 291 1 551 243 38 47 chr11 36208569 36208598 -112574874 - L1MC5 LINE L1 -252 7709 7681 2135 120 0 0 chr11 36208600 36208901 -112574571 + AluSx SINE Alu 1 301 -11 393 215 82 6 chr11 36209006 36209164 -112574308 - L1ME4a LINE L1 -239 5882 5713 766 260 62 121 chr11 36209188 36209718 -112573754 + MLT1J LTR MaLR 9 507 -4 227 295 38 95 chr11 36209737 36209947 -112573525 + L2 LINE L2 3116 3313 0 199 359 0 0 chr11 36209966 36210030 -112573442 + MIR SINE MIR 83 146 -62 209 296 56 28 chr11 36210149 36210257 -112573215 - L2 LINE L2 -376 2937 2827 1968 147 0 0 chr11 36210280 36210573 -112572899 - AluJb SINE Alu -19 293 1 272 264 161 0 chr11 36210619 36210706 -112572766 + MIR SINE MIR 162 262 0 2984 151 9 52 chr11 36211061 36211115 -112572357 + L1MB5 LINE L1 5391 5446 -728 1788 149 12 16 chr11 36211115 36211437 -112572035 + L1MC1 LINE L1 6013 6333 0 1841 50 12 8 chr11 36211437 36211694 -112571778 + L1PA7 LINE L1 5896 6157 0 2984 151 9 52 chr11 36211694 36212302 -112571170 + L1MB5 LINE L1 5444 5994 -180 1684 180 25 0 chr11 36212550 36212866 -112570606 + MER33 DNA MER1_type 1 324 0 446 234 0 57 chr11 36214396 36214537 -112568935 - MIR3 SINE MIR -30 178 46 1824 220 149 31 chr11 36215189 36215415 -112568057 + MLT1G LTR MaLR 12 210 -380 2163 108 21 0 chr11 36215415 36215702 -112567770 + AluSx SINE Alu 1 293 -19 1824 220 149 31 chr11 36215702 36215993 -112567479 + MLT1G LTR MaLR 210 590 0 808 281 74 53 chr11 36216799 36217229 -112566243 - MLT1H LTR MaLR -110 439 1 805 239 73 36 chr11 36217339 36217586 -112565886 + MIR SINE MIR 7 262 0 548 286 113 0 chr11 36217822 36218035 -112565437 + L1ME4a LINE L1 5657 5893 -228 1897 220 78 103 chr11 36218244 36218568 -112564904 + L1ME3A LINE L1 5374 5705 -465 1668 174 25 0 chr11 36218568 36218843 -112564629 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr11 36218846 36218870 -112564602 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1897 220 78 103 chr11 36218870 36219285 -112564187 + L1ME3A LINE L1 5707 6097 -73 2001 123 36 0 chr11 36219285 36219586 -112563886 + AluSq SINE Alu 1 312 -1 1897 220 78 103 chr11 36219586 36219654 -112563818 + L1ME3A LINE L1 6097 6165 -5 3280 106 58 59 chr11 36221437 36222020 -112561452 - LTR10A LTR ERV1 -2 631 1 338 373 19 19 chr11 36222826 36222987 -112560485 - L2 LINE L2 -2 3270 3110 21 36 0 0 chr11 36223189 36223217 -112560255 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 91 13 chr11 36223219 36223296 -112560176 - L3b LINE CR1 -290 1293 1211 259 319 14 0 chr11 36224604 36224676 -112558796 - L2 LINE L2 -56 3216 3144 284 355 81 0 chr11 36224794 36224918 -112558554 + MIR3 SINE MIR 33 166 -42 1173 249 46 18 chr11 36224921 36225310 -112558162 - LTR16B LTR ERVL -3 461 62 332 326 62 8 chr11 36225796 36225925 -112557547 + MIR SINE MIR 32 167 -95 1266 151 16 69 chr11 36225927 36226205 -112557267 + AluJb SINE Alu 64 312 0 314 266 0 88 chr11 36226205 36226318 -112557154 + MIR SINE MIR 158 260 -2 183 302 5 111 chr11 36226664 36226853 -112556619 - L2 LINE L2 -439 2875 2707 183 42 0 0 chr11 36227579 36227603 -112555869 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1638 183 4 4 chr11 36227607 36227886 -112555586 - AluJb SINE Alu -33 279 1 932 218 30 42 chr11 36228036 36228298 -112555174 - MIR SINE MIR -1 261 3 289 278 175 0 chr11 36228393 36228490 -112554982 + L2 LINE L2 3155 3268 -4 1366 169 81 153 chr11 36228730 36229205 -112554267 + MLT1D LTR MaLR 1 435 -70 2205 99 0 0 chr11 36229205 36229511 -112553961 - AluSq SINE Alu 0 306 1 1366 169 81 153 chr11 36229511 36229578 -112553894 + MLT1D LTR MaLR 435 505 0 184 282 0 0 chr11 36229593 36229632 -112553840 - L2 LINE L2 -77 3236 3198 761 248 52 17 chr11 36229809 36230039 -112553433 - MIR SINE MIR -17 245 8 2033 122 7 0 chr11 36230300 36230604 -112552868 + AluSx SINE Alu 3 308 0 590 239 149 11 chr11 36230924 36231112 -112552360 - MIR SINE MIR -26 236 23 1822 156 13 19 chr11 36231964 36232271 -112551201 + AluJo SINE Alu 1 305 -7 2266 108 0 0 chr11 36233021 36233318 -112550154 - AluSx SINE Alu -14 298 2 797 144 7 62 chr11 36233319 36233465 -112550007 - FLAM_C SINE Alu -2 141 4 563 269 127 5 chr11 36233578 36233775 -112549697 + MIR SINE MIR 42 262 0 527 375 18 13 chr11 36233904 36234128 -112549344 - L3 LINE CR1 -133 1444 1220 456 104 0 0 chr11 36234874 36234941 -112548531 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 507 204 14 63 chr11 36234943 36235085 -112548387 - L2 LINE L2 -4 3268 3134 233 258 0 32 chr11 36235282 36235344 -112548128 + L2 LINE L2 3254 3313 0 295 272 136 19 chr11 36235992 36236095 -112547377 - MIR SINE MIR -5 257 143 2630 40 0 0 chr11 36236119 36236417 -112547055 - AluYa5 SINE Alu -13 298 1 1081 197 25 29 chr11 36236421 36236660 -112546812 + MLT2B1 LTR ERVL 8 245 -169 486 0 0 0 chr11 36236747 36236801 -112546671 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2100 85 46 0 chr11 36237394 36237677 -112545795 - AluSg SINE Alu -13 297 2 1804 108 8 8 chr11 36237782 36238040 -112545432 - L1PA13 LINE L1 -5 6158 5901 233 174 0 0 chr11 36238094 36238140 -112545332 - LTR66 LTR ERVL -161 449 404 309 51 0 0 chr11 36238279 36238318 -112545154 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1110 248 45 99 chr11 36238322 36238864 -112544608 - L2 LINE L2 -8 3305 2798 737 316 88 17 chr11 36239466 36239962 -112543510 - L2 LINE L2 -11 3302 2771 314 256 68 8 chr11 36240093 36240210 -112543262 - MIR SINE MIR -75 187 64 2381 154 77 23 chr11 36240277 36240369 -112543103 + L1M4 LINE L1 3370 3456 -2690 2070 138 7 0 chr11 36240369 36240673 -112542799 + AluSx SINE Alu 1 306 -6 2381 154 77 23 chr11 36240673 36241060 -112542412 + L1M4 LINE L1 3456 3875 -2271 24 53 0 0 chr11 36241290 36241328 -112542144 + AT_rich Low_complexity Low_complexity 1 38 0 564 163 22 0 chr11 36241617 36241709 -112541763 - AluJo SINE Alu -176 136 43 235 224 0 0 chr11 36242433 36242482 -112540990 + Alu SINE Alu 250 298 -3 1018 253 48 11 chr11 36242511 36242601 -112540871 + L1M4 LINE L1 4957 5042 -1104 1732 191 0 9 chr11 36242601 36242916 -112540556 + AluJo SINE Alu 1 312 0 1018 253 48 11 chr11 36242916 36243177 -112540295 + L1M4 LINE L1 5042 5321 -825 953 143 77 3 chr11 36243671 36243856 -112539616 - THE1C LTR MaLR -208 167 1 254 158 0 0 chr11 36243860 36243898 -112539574 + LTR39 LTR ERV1 739 776 -7 1778 235 82 67 chr11 36243958 36244627 -112538845 + LTR8A LTR ERV1 34 712 -15 1123 135 18 42 chr11 36244970 36245156 -112538316 + MLT1B LTR MaLR 1 176 -198 1293 208 47 11 chr11 36245156 36245430 -112538042 + AluSq SINE Alu 1 284 -19 1123 135 18 42 chr11 36245430 36245469 -112538003 + MLT1B LTR MaLR 176 214 -160 259 270 0 0 chr11 36245480 36245543 -112537929 + MLT1B LTR MaLR 170 232 -158 21 0 0 0 chr11 36246416 36246437 -112537035 + AT_rich Low_complexity Low_complexity 1 21 0 300 221 0 0 chr11 36247280 36247357 -112536115 + (CA)n Simple_repeat Simple_repeat 2 78 0 1295 112 103 28 chr11 36248626 36248840 -112534632 + MER30 DNA MER1_type 1 230 0 258 263 40 112 chr11 36249092 36249244 -112534228 - LTR8A LTR ERV1 -16 711 571 353 289 169 20 chr11 36249810 36250011 -112533461 - L2 LINE L2 0 3313 3083 353 331 159 26 chr11 36250031 36250182 -112533290 - MER5A DNA MER1_type -6 183 13 440 283 136 29 chr11 36250188 36250456 -112533016 - L2 LINE L2 -275 3038 2740 314 241 8 65 chr11 36250463 36250504 -112532968 - MLT2D LTR ERVL 0 414 414 438 101 0 0 chr11 36250504 36250573 -112532899 + (TG)n Simple_repeat Simple_repeat 2 70 0 314 241 8 65 chr11 36250573 36250642 -112532830 - MLT2D LTR ERVL 0 414 343 7605 143 8 45 chr11 36251306 36252736 -112530736 + L1P LINE L1 907 2284 -3862 2184 112 0 3 chr11 36252900 36253186 -112530286 - AluSx SINE Alu -27 285 1 307 324 65 7 chr11 36253537 36253676 -112529796 + L2 LINE L2 3167 3313 0 2164 187 65 47 chr11 36253787 36254386 -112529086 + LTR39 LTR ERV1 1 610 -173 240 140 0 20 chr11 36254525 36254575 -112528897 + L1MA8 LINE L1 6236 6284 -7 253 316 32 0 chr11 36256664 36256759 -112526713 - MIR SINE MIR -57 151 54 22 0 0 0 chr11 36259235 36259257 -112524215 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr11 36259290 36259326 -112524146 + (GA)n Simple_repeat Simple_repeat 1 36 0 1431 219 11 0 chr11 36259327 36259601 -112523871 - AluJo SINE Alu -35 277 1 704 154 62 8 chr11 36259802 36259932 -112523540 - LTR8 LTR ERV1 -554 137 1 23 0 0 0 chr11 36260538 36260561 -112522911 + AT_rich Low_complexity Low_complexity 1 23 0 283 279 57 33 chr11 36260924 36261046 -112522426 + MIR SINE MIR 111 235 -27 253 392 26 10 chr11 36261264 36261458 -112522014 - L2 LINE L2 -632 2682 2486 477 368 135 18 chr11 36261467 36262143 -112521329 - L2 LINE L2 -1442 1872 1118 225 271 102 17 chr11 36262272 36262390 -112521082 - L2 LINE L2 -1218 2096 1969 4570 206 75 11 chr11 36262577 36263647 -112519825 - L1M2 LINE L1 -4499 2350 1213 247 343 39 39 chr11 36263952 36264054 -112519418 - L2 LINE L2 -23 3249 3148 204 319 199 0 chr11 36264201 36264342 -112519130 - L2 LINE L2 -300 2972 2804 2496 177 33 2 chr11 36264371 36264790 -112518682 + MSTB1 LTR MaLR 1 432 0 272 287 105 14 chr11 36265435 36265578 -112517894 + L1MC/D LINE L1 5625 5780 -2028 8129 74 5 3 chr11 36266627 36267785 -112515687 + L1P LINE L1 3620 4779 -1367 1482 119 0 0 chr11 36267890 36268092 -112515380 - AluSq SINE Alu -111 202 1 203 353 84 17 chr11 36268531 36268650 -112514822 - L2 LINE L2 -23 3249 3123 392 215 0 89 chr11 36268670 36268725 -112514747 + L1ME LINE L1 5435 5493 -677 1857 157 0 0 chr11 36268725 36269005 -112514467 + AluJb SINE Alu 1 280 -32 200 83 0 28 chr11 36269008 36269044 -112514428 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 392 215 0 89 chr11 36269044 36269119 -112514353 + L1ME LINE L1 5495 5557 -613 425 239 0 43 chr11 36269126 36269310 -112514162 + AluJo SINE Alu 1 176 -136 227 79 26 0 chr11 36269394 36269432 -112514040 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1175 147 147 0 chr11 36271928 36272146 -112511326 + Tigger3(Golem) DNA MER2_type 2780 3029 0 478 211 204 0 chr11 36272159 36272301 -112511171 + L1MB4 LINE L1 5477 5647 -533 1911 178 80 2 chr11 36272303 36272714 -112510758 - Tigger2 DNA MER2_type -3 2715 2273 435 132 15 0 chr11 36272704 36272772 -112510700 - Tigger2 DNA MER2_type -2649 69 1 * 2442 174 13 2 chr11 36272778 36273255 -112510217 + L1MB4 LINE L1 5651 6132 -48 8572 71 0 14 chr11 36273394 36274570 -112508902 - L1P LINE L1 -4930 1216 58 1955 92 19 45 chr11 36274728 36275012 -112508460 + L1PA7 LINE L1 5841 6118 -36 2287 79 7 16 chr11 36275012 36275316 -112508156 - AluY SINE Alu -9 302 2 1955 92 19 45 chr11 36275316 36275345 -112508127 + L1PA7 LINE L1 6118 6146 -8 24 0 0 0 chr11 36275669 36275693 -112507779 + AT_rich Low_complexity Low_complexity 1 24 0 3667 34 0 5 chr11 36275791 36276232 -112507240 - L1PA5 LINE L1 -8 6146 5708 1205 287 71 5 chr11 36276366 36276774 -112506698 - Zaphod DNA AcHobo -3552 479 45 688 275 110 14 chr11 36276892 36277110 -112506362 - MER69 DNA AcHobo -744 482 244 1059 268 76 5 chr11 36277251 36277804 -112505668 + MER69 DNA AcHobo 1461 2052 -474 25 90 0 0 chr11 36277857 36277924 -112505548 + AT_rich Low_complexity Low_complexity 1 67 0 1720 144 26 0 chr11 36278724 36279037 -112504435 + L1MA9 LINE L1 5991 6311 -1 324 210 116 80 chr11 36279102 36279240 -112504232 - L1ME LINE L1 -302 5819 5677 460 327 145 35 chr11 36279326 36279644 -112503828 - L2 LINE L2 0 3272 2920 534 272 235 14 chr11 36279942 36280155 -112503317 + MIR SINE MIR 3 262 0 697 197 8 0 chr11 36280338 36280460 -112503012 + FLAM_C SINE Alu 1 123 -20 25 31 0 0 chr11 36280460 36280492 -112502980 + AT_rich Low_complexity Low_complexity 1 32 0 895 211 19 31 chr11 36281358 36281619 -112501853 - MER2 DNA MER2_type -81 264 7 243 338 186 14 chr11 36281929 36282074 -112501398 + L2 LINE L2 3097 3266 -6 25 31 0 0 chr11 36282546 36282578 -112500894 + AT_rich Low_complexity Low_complexity 1 32 0 241 282 0 0 chr11 36283384 36283455 -112500017 - L1P5 LINE L1 -577 5577 5507 231 203 0 0 chr11 36285119 36285183 -112498289 + CT-rich Low_complexity Low_complexity 1 64 0 1562 199 11 4 chr11 36285299 36285570 -112497902 + AluJo SINE Alu 3 275 -37 261 75 0 0 chr11 36285570 36285610 -112497862 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 333 62 0 0 chr11 36285755 36285803 -112497669 + (C)n Simple_repeat Simple_repeat 1 48 0 1119 268 24 0 chr11 36286021 36286360 -112497112 + L1 LINE L1 3911 4257 -1889 1189 235 46 26 chr11 36286432 36286853 -112496619 + MER66A LTR ERV1 164 478 0 806 226 92 14 chr11 36286854 36287222 -112496250 + L1 LINE L1 4295 4691 -1455 9040 48 3 1 chr11 36287350 36288541 -112494931 + L1P LINE L1 1455 2648 -3498 254 365 31 13 chr11 36288642 36288801 -112494671 + L2 LINE L2 2897 3058 -214 252 0 0 0 chr11 36289034 36289062 -112494410 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1575 172 20 7 chr11 36289442 36289739 -112493733 + L1P3 LINE L1 10 310 -6151 805 134 76 6 chr11 36290724 36290881 -112492591 + Tigger3(Golem) DNA MER2_type 2589 2756 -273 1342 90 0 48 chr11 36290938 36291126 -112492346 - AluSq SINE Alu -134 179 1 276 189 0 0 chr11 36291126 36291179 -112492293 + AluSg/x SINE Alu 187 239 -61 1868 129 0 0 chr11 36291185 36291471 -112492001 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 540 252 130 0 chr11 36291592 36291723 -112491749 - MIR SINE MIR -72 190 43 354 273 0 0 chr11 36292429 36292506 -112490966 + L2 LINE L2 3231 3307 -6 862 28 9 0 chr11 36292942 36293050 -112490422 - L1P2 LINE L1 -419 5736 5628 4382 157 38 45 chr11 36293078 36294172 -112489300 - L1MA6 LINE L1 -145 6155 5057 939 191 5 5 chr11 36294172 36294361 -112489111 + L1MA6 LINE L1 4887 5075 -1071 316 175 31 15 chr11 36294355 36294499 -112488973 - L1P LINE L1 -832 5314 5168 * 6950 57 10 0 chr11 36294737 36296492 -112486980 + L1PA6 LINE L1 4379 6152 -2 258 32 0 0 chr11 36298229 36298260 -112485212 + (TA)n Simple_repeat Simple_repeat 2 32 0 2246 98 7 3 chr11 36298370 36298665 -112484807 - AluSg SINE Alu -14 296 1 458 274 37 56 chr11 36299165 36299380 -112484092 - MIR SINE MIR 0 262 52 452 175 10 10 chr11 36299674 36299771 -112483701 + MSTB1 LTR MaLR 7 103 -329 2020 111 14 17 chr11 36300197 36300494 -112482978 + AluSq SINE Alu 1 296 -17 841 172 6 56 chr11 36300496 36300676 -112482796 + AluSg/x SINE Alu 137 307 -5 1794 114 54 14 chr11 36301118 36301398 -112482074 + AluSc SINE Alu 2 292 -17 553 290 84 35 chr11 36301407 36301693 -112481779 - MLT1I LTR MaLR -91 318 19 1584 73 23 0 chr11 36302628 36302848 -112480624 + L1PA7 LINE L1 5778 6002 -152 231 91 0 0 chr11 36302988 36303021 -112480451 + L1PA7 LINE L1 6097 6129 -25 2240 95 7 13 chr11 36303021 36303327 -112480145 - AluSq SINE Alu -9 304 1 234 170 0 21 chr11 36303328 36303375 -112480097 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36303819 36303854 -112479618 + AT_rich Low_complexity Low_complexity 1 35 0 1925 162 28 7 chr11 36303942 36304259 -112479213 + AluJb SINE Alu 1 312 0 317 207 0 0 chr11 36304458 36304516 -112478956 - MLT1H1 LTR MaLR -2 553 496 207 0 0 0 chr11 36304516 36304539 -112478933 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 257 136 0 23 chr11 36304539 36304583 -112478889 - Alu SINE Alu -19 283 241 1828 160 7 3 chr11 36305195 36305488 -112477984 + AluJb SINE Alu 19 312 0 180 250 0 0 chr11 36305500 36305544 -112477928 + MIR SINE MIR 219 262 0 2342 66 10 3 chr11 36306237 36306539 -112476933 - AluY SINE Alu 0 311 8 279 335 81 6 chr11 36307133 36307294 -112476178 - MIR SINE MIR -24 238 66 23 54 0 0 chr11 36307317 36307354 -112476118 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr11 36307505 36307528 -112475944 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 23353 50 11 11 chr11 36308170 36311421 -112472051 + L1P LINE L1 2131 5380 -766 879 237 290 5 chr11 36313197 36313638 -112469834 - L2 LINE L2 -4 3309 2748 260 270 0 16 chr11 36313818 36313881 -112469591 + MER5A DNA MER1_type 128 189 0 410 249 61 61 chr11 36313908 36314073 -112469399 + MER58B DNA MER1_type 177 341 0 1342 90 0 48 chr11 36314089 36314277 -112469195 + AluSq SINE Alu 1 179 -134 1172 73 90 0 chr11 36314336 36314513 -112468959 - Tigger3(Golem) DNA MER2_type -276 2753 2561 624 138 0 37 chr11 36314516 36314625 -112468847 + AluJb SINE Alu 1 105 -207 189 0 0 0 chr11 36315107 36315128 -112468344 + (CA)n Simple_repeat Simple_repeat 2 22 0 272 175 0 50 chr11 36316146 36316226 -112467246 - L1MA10 LINE L1 -3 6331 6256 1839 208 76 37 chr11 36316248 36316891 -112466581 - L1M4 LINE L1 -1197 4949 4282 411 239 61 35 chr11 36316920 36317117 -112466355 - Tigger4(Zombi) DNA MER2_type -1 2730 2529 1228 277 37 13 chr11 36317254 36317629 -112465843 + MLT1E2 LTR MaLR 242 625 -1 1877 137 3 20 chr11 36319113 36319405 -112464067 - AluSq SINE Alu -26 287 1 2348 93 0 3 chr11 36319531 36319822 -112463650 - AluSx SINE Alu -22 290 1 2289 99 0 13 chr11 36320656 36320959 -112462513 - AluSx SINE Alu -13 299 1 2194 126 8 14 chr11 36321108 36321465 -112462007 - L1MA8 LINE L1 0 6291 5937 359 340 32 19 chr11 36321854 36322010 -112461462 + L2 LINE L2 2682 2839 -475 212 152 43 0 chr11 36322458 36322504 -112460968 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2250 85 7 0 chr11 36323315 36323597 -112459875 - AluSg SINE Alu -26 284 1 303 280 112 8 chr11 36323628 36323753 -112459719 + MIR3 SINE MIR 50 187 -21 517 275 140 0 chr11 36324294 36324472 -112459000 - MIR SINE MIR -40 222 20 28 0 0 0 chr11 36324684 36324712 -112458760 + AT_rich Low_complexity Low_complexity 1 28 0 912 130 45 0 chr11 36324831 36324985 -112458487 + LTR41 LTR ERVL 1 161 -612 1762 51 182 12 chr11 36324986 36325239 -112458233 - AluY SINE Alu -15 296 1 508 265 15 0 chr11 36325349 36325485 -112457987 + MIR SINE MIR 42 179 -83 469 375 18 13 chr11 36325675 36325899 -112457573 - L3 LINE CR1 -133 1444 1220 492 99 0 0 chr11 36326645 36326716 -112456756 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 459 204 14 63 chr11 36326718 36326860 -112456612 - L2 LINE L2 -4 3268 3134 220 254 17 0 chr11 36327062 36327121 -112456351 + L2 LINE L2 3254 3313 0 268 297 119 0 chr11 36327776 36327877 -112455595 - MIR SINE MIR -7 255 143 2316 86 0 0 chr11 36327901 36328193 -112455279 - AluYa5 SINE Alu -13 298 7 181 344 115 54 chr11 36328557 36329054 -112454418 - L3 LINE CR1 -727 850 324 6306 165 14 12 chr11 36329675 36330806 -112452666 + Tigger4(Zombi) DNA MER2_type 705 1837 -894 800 169 0 0 chr11 36330981 36331099 -112452373 + FLAM_C SINE Alu 1 118 -25 942 202 33 0 chr11 36332321 36332504 -112450968 + MER5A DNA MER1_type 1 189 0 337 307 51 89 chr11 36332517 36332718 -112450754 + L2 LINE L2 189 371 -2943 1745 174 0 11 chr11 36332718 36333000 -112450472 - AluJo SINE Alu -31 281 3 337 307 51 89 chr11 36333000 36333169 -112450303 + L2 LINE L2 371 545 -2769 1553 95 5 5 chr11 36333171 36333381 -112450091 + MLT2B1 LTR ERVL 2 211 -309 843 147 0 31 chr11 36333382 36333511 -112449961 + FLAM_C SINE Alu 2 126 -17 657 175 8 50 chr11 36333516 36333540 -112449932 + MLT2B1 LTR ERVL 199 222 -293 402 21 0 0 chr11 36333540 36333587 -112449885 + (TC)n Simple_repeat Simple_repeat 2 48 0 2028 116 3 14 chr11 36333587 36333881 -112449591 - AluSp SINE Alu -22 291 1 657 175 8 50 chr11 36333881 36333975 -112449497 + MLT2B1 LTR ERVL 220 313 -202 448 297 33 6 chr11 36334005 36334187 -112449285 - L2 LINE L2 -557 2757 2571 2214 117 3 0 chr11 36334194 36334494 -112448978 - AluSx SINE Alu -11 301 1 343 215 51 13 chr11 36334534 36334613 -112448859 + MER5A DNA MER1_type 8 89 -100 374 286 104 11 chr11 36334901 36335083 -112448389 + L2 LINE L2 1721 1919 -1395 1211 288 114 40 chr11 36335389 36335765 -112447707 + L2 LINE L2 1930 2276 -1038 1986 114 0 17 chr11 36335765 36336101 -112447371 + AluSq SINE Alu 1 331 0 1211 288 114 40 chr11 36336101 36336458 -112447014 + L2 LINE L2 2276 2719 -595 216 0 0 0 chr11 36336841 36336865 -112446607 + (TA)n Simple_repeat Simple_repeat 2 25 0 2191 103 0 27 chr11 36337203 36337504 -112445968 - AluSg SINE Alu -16 294 2 2030 150 7 0 chr11 36337505 36337799 -112445673 - AluSx SINE Alu -14 298 3 1336 189 42 39 chr11 36338064 36338370 -112445102 - AluJo SINE Alu -5 307 1 925 262 197 29 chr11 36338508 36338893 -112444579 - MLT1G LTR MaLR 0 590 141 1612 191 0 92 chr11 36339542 36339967 -112443505 - MLT1B LTR MaLR -4 386 1 2265 101 3 3 chr11 36340362 36340660 -112442812 + AluSp SINE Alu 1 298 -15 639 288 70 4 chr11 36341281 36341524 -112441948 - MIR SINE MIR 0 262 4 252 374 93 22 chr11 36341550 36341689 -112441783 + MIR SINE MIR 23 171 -91 809 137 17 0 chr11 36341847 36341964 -112441508 + FLAM_C SINE Alu 1 119 -24 32 35 0 18 chr11 36341964 36341998 -112441474 + AT_rich Low_complexity Low_complexity 1 35 -21 2028 147 0 0 chr11 36341998 36342284 -112441188 - AluSx SINE Alu -24 288 3 32 35 0 18 chr11 36342284 36342306 -112441166 + AT_rich Low_complexity Low_complexity 35 56 0 916 138 0 0 chr11 36342574 36342704 -112440768 + FLAM_C SINE Alu 1 130 -3 727 294 174 31 chr11 36343118 36343328 -112440144 + L2 LINE L2 1466 1645 -1669 1980 154 13 3 chr11 36343328 36343634 -112439838 + AluJb SINE Alu 3 311 -1 727 294 174 31 chr11 36343634 36344028 -112439444 + L2 LINE L2 1645 2156 -1158 1120 133 17 33 chr11 36344028 36344209 -112439263 - AluSx SINE Alu -1 309 132 606 109 0 40 chr11 36344209 36344310 -112439162 - L1PA8 LINE L1 0 6172 6076 2682 65 6 0 chr11 36344311 36344647 -112438825 - L1PA8 LINE L1 -30 6142 5805 1028 94 0 0 chr11 36344664 36344791 -112438681 - AluSx SINE Alu -178 134 8 1416 315 56 42 chr11 36344794 36345598 -112437874 + L2 LINE L2 2154 2968 -346 1969 119 10 26 chr11 36346080 36346218 -112437254 + AluSx SINE Alu 1 140 -172 2329 96 0 0 chr11 36346218 36346511 -112436961 + AluY SINE Alu 1 293 -18 1969 119 10 26 chr11 36346511 36346675 -112436797 + AluSx SINE Alu 140 298 -14 1343 141 4 18 chr11 36346760 36346987 -112436485 - AluJo SINE Alu -1 311 88 480 282 118 12 chr11 36347292 36347462 -112436010 - MIR SINE MIR -70 192 5 2028 134 0 3 chr11 36347665 36347971 -112435501 - AluSx SINE Alu 0 305 1 957 130 0 0 chr11 36347992 36348130 -112435342 - FRAM SINE Alu -8 168 31 2346 107 0 0 chr11 36348273 36348571 -112434901 - AluSg SINE Alu -12 298 1 923 114 0 15 chr11 36348924 36349056 -112434416 + FLAM_C SINE Alu 1 130 -3 731 178 82 14 chr11 36349451 36349597 -112433875 - FAM SINE Alu -18 167 12 513 169 66 25 chr11 36349806 36349960 -112433512 - Tigger3(Golem) DNA MER2_type -686 2343 1 2149 135 0 0 chr11 36350018 36350321 -112433151 - AluSx SINE Alu -9 303 1 1957 111 35 3 chr11 36351018 36351306 -112432166 - AluSq SINE Alu -16 297 1 180 182 0 0 chr11 36351809 36351853 -112431619 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 2080 96 0 21 chr11 36352550 36352832 -112430640 - AluSx SINE Alu -23 289 14 1833 177 0 10 chr11 36353212 36353517 -112429955 + AluJb SINE Alu 1 302 -10 262 261 42 21 chr11 36353533 36353675 -112429797 - L1ME4a LINE L1 -16 6105 5961 414 58 0 0 chr11 36354608 36354660 -112428812 - MADE1 DNA Mariner 0 80 29 489 262 35 0 chr11 36355281 36355426 -112428046 - L2 LINE L2 -6 3307 3158 4542 146 71 33 chr11 36355430 36356543 -112426929 + L1MB7 LINE L1 5021 6175 -9 2013 143 13 3 chr11 36356560 36356868 -112426604 + AluSx SINE Alu 1 311 -1 34 42 0 0 chr11 36357005 36357053 -112426419 + AT_rich Low_complexity Low_complexity 1 48 0 1809 127 21 28 chr11 36357298 36357581 -112425891 + AluSq SINE Alu 1 281 -32 261 0 0 0 chr11 36357581 36357610 -112425862 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 358 131 16 0 chr11 36357611 36357672 -112425800 - L1MA10 LINE L1 -7 6327 6266 1031 192 0 11 chr11 36357706 36357883 -112425589 - FAM SINE Alu 0 175 1 207 261 0 0 chr11 36358282 36358351 -112425121 + L2 LINE L2 2593 2661 -653 228 163 0 0 chr11 36358389 36358432 -112425040 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 279 82 55 chr11 36358454 36358860 -112424612 + L2 LINE L2 2683 3091 -181 2000 159 0 0 chr11 36359357 36359646 -112423826 + AluJo SINE Alu 1 289 -23 477 257 181 12 chr11 36359833 36360004 -112423468 - MIR SINE MIR -60 202 3 206 271 57 41 chr11 36360004 36360105 -112423367 + L2 LINE L2 3207 3309 -4 351 238 24 0 chr11 36360128 36360212 -112423260 - L2 LINE L2 0 3272 3187 193 326 12 0 chr11 36360221 36360307 -112423165 - L3 LINE CR1 -33 1544 1458 250 257 29 48 chr11 36360404 36360509 -112422963 - L3 LINE CR1 -293 1284 1182 1953 146 3 0 chr11 36360579 36360866 -112422606 + AluJb SINE Alu 2 289 -23 317 296 68 0 chr11 36360890 36360978 -112422494 - L2 LINE L2 -36 3236 3143 371 83 17 0 chr11 36361316 36361376 -112422096 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 267 307 10 0 chr11 36361500 36361601 -112421871 + MIR SINE MIR 157 258 -4 257 303 40 10 chr11 36361625 36361724 -112421748 - L3 LINE CR1 -811 766 665 458 275 13 13 chr11 36362229 36362378 -112421094 + MER103 DNA DNA 2 150 -16 204 171 0 0 chr11 36362404 36362418 -112421054 + A-rich Low_complexity Low_complexity 1 14 -27 2645 48 0 10 chr11 36362418 36362732 -112420740 + AluY SINE Alu 1 311 0 204 171 0 0 chr11 36362732 36362758 -112420714 + A-rich Low_complexity Low_complexity 13 41 0 2479 83 0 6 chr11 36363084 36363398 -112420074 + AluSx SINE Alu 1 312 0 2373 88 0 25 chr11 36363744 36364063 -112419409 + AluSx SINE Alu 1 311 -1 2039 126 37 62 chr11 36364122 36364201 -112419271 - MER47A DNA MER2_type -1957 366 287 2026 82 44 7 chr11 36364201 36364498 -112418974 + AluY SINE Alu 3 309 0 2039 126 37 62 chr11 36364498 36364791 -112418681 - MER47A DNA MER2_type -2036 287 2 1916 139 29 0 chr11 36364926 36365206 -112418266 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr11 36365300 36365325 -112418147 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 218 18 18 chr11 36365403 36365458 -112418014 - MIR SINE MIR -12 250 196 225 132 0 0 chr11 36365739 36365777 -112417695 + (TC)n Simple_repeat Simple_repeat 2 39 0 278 298 91 8 chr11 36365947 36366068 -112417404 - MIR SINE MIR -98 164 34 192 40 0 0 chr11 36366433 36366458 -112417014 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 890 168 0 0 chr11 36366475 36366606 -112416866 - AluSq/x SINE Alu -180 133 3 2001 148 0 0 chr11 36367372 36367669 -112415803 - AluJb SINE Alu -15 297 1 236 283 141 0 chr11 36367704 36367796 -112415676 + MIR SINE MIR 156 260 -2 374 295 38 19 chr11 36368430 36368535 -112414937 + MIR SINE MIR 50 156 -106 880 98 8 15 chr11 36368557 36368689 -112414783 + AluSq/x SINE Alu 1 131 -182 774 166 63 91 chr11 36369084 36369259 -112414213 - AluJo SINE Alu -20 292 123 218 56 56 19 chr11 36369274 36369328 -112414144 + (TTA)n Simple_repeat Simple_repeat 1 56 0 37 69 0 0 chr11 36369345 36369417 -112414055 + AT_rich Low_complexity Low_complexity 1 72 0 240 35 0 0 chr11 36369601 36369630 -112413842 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 9993 45 1 77 chr11 36369630 36371068 -112412404 + SVA Other Other 57 1386 0 2001 143 0 0 chr11 36371416 36371723 -112411749 + AluSx SINE Alu 1 307 -5 1556 145 0 93 chr11 36372418 36372750 -112410722 - AluJb SINE Alu -11 301 1 417 219 84 17 chr11 36372750 36372861 -112410611 - MIR SINE MIR -52 210 89 1746 149 68 54 chr11 36373076 36373446 -112410026 - THE1C LTR MaLR 0 375 1 239 150 0 0 chr11 36373663 36373703 -112409769 + MER45 DNA AcHobo 1 40 -1541 417 267 48 0 chr11 36373706 36373811 -112409661 - MER5A DNA MER1_type -71 118 9 7207 128 128 104 chr11 36373963 36375621 -112407851 + pTR5 LTR ERV1 741 2438 0 348 196 167 20 chr11 36375630 36375732 -112407740 + MIR SINE MIR 96 212 -50 1865 138 27 7 chr11 36375937 36376235 -112407237 - AluSx SINE Alu -8 304 1 2101 161 5 72 chr11 36376316 36376479 -112406993 - MLT1B LTR MaLR -3 387 215 1394 211 35 54 chr11 36376479 36376814 -112406658 - MLT1A1 LTR MaLR -2 363 34 1713 166 0 3 chr11 36376814 36377128 -112406344 + AluJo SINE Alu 1 312 0 1394 211 35 54 chr11 36377128 36377162 -112406310 - MLT1A1 LTR MaLR -331 34 1 2101 161 5 72 chr11 36377162 36377226 -112406246 - MLT1B LTR MaLR -175 215 148 1962 126 33 0 chr11 36377226 36377528 -112405944 - AluSx SINE Alu 0 312 1 2101 161 5 72 chr11 36377528 36377714 -112405758 - MLT1B LTR MaLR -242 148 1 2582 23 7 3 chr11 36377801 36378110 -112405362 - AluY SINE Alu -1 310 1 425 296 53 0 chr11 36378224 36378356 -112405116 + MIR SINE MIR 65 203 -59 1766 162 0 3 chr11 36378422 36378719 -112404753 - AluJb SINE Alu -16 296 1 1937 121 50 0 chr11 36378742 36379039 -112404433 - AluSx SINE Alu 0 312 1 971 129 18 47 chr11 36379071 36379241 -112404231 + LTR47A LTR ERVL 1 165 -287 1131 132 30 0 chr11 36379461 36379658 -112403814 - L1MA4A LINE L1 -1 6302 6100 1676 141 72 34 chr11 36379663 36379843 -112403629 + LTR47A LTR ERVL 151 348 -104 2231 107 0 0 chr11 36379843 36380152 -112403320 - AluSx SINE Alu -3 309 1 1676 141 72 34 chr11 36380152 36380262 -112403210 + LTR47A LTR ERVL 348 452 0 182 358 0 0 chr11 36381598 36381665 -112401807 + L2 LINE L2 2992 3058 -214 201 254 0 90 chr11 36381790 36381857 -112401615 + L2 LINE L2 3189 3249 -23 2091 105 0 7 chr11 36382184 36382499 -112400973 + AluSx SINE Alu 1 313 0 556 260 73 29 chr11 36382730 36382934 -112400538 + MIR SINE MIR 18 230 -32 2233 92 3 0 chr11 36382973 36383279 -112400193 - AluSx SINE Alu -5 307 1 568 239 107 49 chr11 36384103 36384234 -112399238 + L1M4 LINE L1 2846 2968 -3178 1851 112 48 0 chr11 36384234 36384536 -112398936 - AluSc SINE Alu 0 315 1 568 239 107 49 chr11 36384536 36384834 -112398638 + L1M4 LINE L1 2968 3301 -2845 2151 125 0 0 chr11 36384835 36385146 -112398326 + AluSx SINE Alu 1 311 -1 452 147 27 0 chr11 36385162 36385237 -112398235 + AluSx SINE Alu 7 83 -229 1476 111 0 5 chr11 36385275 36385508 -112397964 + AluSx SINE Alu 75 306 0 375 318 64 23 chr11 36385661 36385834 -112397638 + MIR SINE MIR 15 194 -68 1781 144 33 13 chr11 36385883 36386189 -112397283 + AluSx SINE Alu 1 312 0 703 180 0 8 chr11 36386194 36386322 -112397150 + FLAM_A SINE Alu 1 127 -6 451 140 184 19 chr11 36386789 36386903 -112396569 + L1MB5 LINE L1 6044 6183 0 1867 120 87 39 chr11 36387074 36387432 -112396040 + THE1C LTR MaLR 1 375 0 1226 166 0 35 chr11 36387757 36387986 -112395486 + AluJb SINE Alu 85 305 -7 830 153 0 0 chr11 36388002 36388120 -112395352 + FLAM_C SINE Alu 7 124 -19 861 288 24 4 chr11 36388303 36388553 -112394919 - MIR SINE MIR -6 256 2 494 196 10 0 chr11 36388593 36388690 -112394782 - MLT1K LTR MaLR -162 426 329 504 274 193 46 chr11 36388802 36389233 -112394239 + MLT1H1 LTR MaLR 32 525 -30 245 369 121 19 chr11 36389434 36389591 -112393881 + MIR SINE MIR 20 192 -70 2125 126 0 0 chr11 36390094 36390404 -112393068 - AluSx SINE Alu -2 310 1 725 241 122 30 chr11 36390656 36390893 -112392579 + MIR SINE MIR 2 260 -2 2218 97 0 7 chr11 36391538 36391846 -112391626 - AluSg SINE Alu -4 306 1 1942 132 7 0 chr11 36391846 36392135 -112391337 - AluSx SINE Alu -21 291 1 488 281 9 0 chr11 36392405 36392519 -112390953 + MIR3 SINE MIR 82 196 -12 2234 101 0 3 chr11 36392526 36392832 -112390640 + AluSx SINE Alu 1 305 -7 1544 108 31 0 chr11 36392922 36393145 -112390327 + MER30 DNA MER1_type 1 230 0 2021 129 7 0 chr11 36393289 36393592 -112389880 + AluSg SINE Alu 1 305 -5 2140 111 7 0 chr11 36394218 36394524 -112388948 + AluY SINE Alu 1 308 -3 219 306 11 123 chr11 36394730 36394964 -112388508 + L2 LINE L2 2807 2991 -281 2286 81 0 3 chr11 36394964 36395262 -112388210 + AluSp SINE Alu 2 298 -15 219 306 11 123 chr11 36395262 36395377 -112388095 + L2 LINE L2 2991 3117 -155 2301 216 61 80 chr11 36395420 36395538 -112387934 - L1ME3A LINE L1 -8 6162 6043 1614 142 0 122 chr11 36395538 36395702 -112387770 + AluJb SINE Alu 1 105 -197 2119 84 14 3 chr11 36395702 36396012 -112387460 + AluSq SINE Alu 1 313 0 1614 142 0 122 chr11 36396012 36396189 -112387283 + AluJb SINE Alu 105 302 0 2301 216 61 80 chr11 36396189 36396669 -112386803 - L1ME3A LINE L1 -127 6043 5555 1969 119 7 3 chr11 36396669 36396964 -112386508 - AluSx SINE Alu -16 296 1 2301 216 61 80 chr11 36396964 36397046 -112386426 - L1ME3A LINE L1 -615 5555 5473 200 83 0 28 chr11 36397046 36397082 -112386390 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1760 157 0 0 chr11 36397085 36397365 -112386107 - AluJb SINE Alu -32 280 1 2301 216 61 80 chr11 36397365 36397420 -112386052 - L1ME3A LINE L1 -699 5471 5435 606 192 54 134 chr11 36397917 36397998 -112385474 + L1M4 LINE L1 5419 5505 -679 2002 114 0 0 chr11 36397998 36398314 -112385158 + AluSx SINE Alu 1 316 0 606 192 54 134 chr11 36398314 36398429 -112385043 + L1M4 LINE L1 5505 5568 -616 2015 120 7 10 chr11 36398429 36398737 -112384735 + AluSg SINE Alu 1 307 -3 606 192 54 134 chr11 36398737 36398775 -112384697 + L1M4 LINE L1 5568 5607 -577 357 340 12 92 chr11 36398943 36399165 -112384307 + L2 LINE L2 2807 2994 -278 2341 77 0 0 chr11 36399165 36399462 -112384010 + AluSp SINE Alu 2 298 -15 357 340 12 92 chr11 36399462 36399577 -112383895 + L2 LINE L2 2994 3117 -155 2011 125 0 10 chr11 36399866 36400171 -112383301 + AluSg SINE Alu 1 302 -8 2841 163 28 26 chr11 36400173 36400271 -112383201 + L1MB7 LINE L1 5599 5695 -489 1941 111 180 45 chr11 36400271 36400312 -112383160 - MSTA LTR MaLR 0 428 394 2091 99 3 14 chr11 36400312 36400606 -112382866 + AluSc SINE Alu 1 291 -18 1941 111 180 45 chr11 36400606 36400941 -112382531 - MSTA LTR MaLR -34 394 1 2841 163 28 26 chr11 36400941 36401419 -112382053 + L1MB7 LINE L1 5695 6176 -8 28 29 0 0 chr11 36401517 36401552 -112381920 + AT_rich Low_complexity Low_complexity 1 35 0 2195 108 0 0 chr11 36401889 36402194 -112381278 - AluSq SINE Alu -8 305 1 1825 127 48 0 chr11 36402253 36402545 -112380927 - AluSq SINE Alu -7 306 1 387 257 50 29 chr11 36402599 36402739 -112380733 + MER5A DNA MER1_type 21 163 -26 289 320 90 28 chr11 36403124 36403302 -112380170 - MER5A DNA MER1_type 0 189 1 228 35 0 0 chr11 36403903 36403932 -112379540 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 186 171 0 0 chr11 36403959 36404000 -112379472 + CT-rich Low_complexity Low_complexity 1 41 0 2195 100 0 10 chr11 36404037 36404337 -112379135 - AluSx SINE Alu -10 302 6 2260 100 0 0 chr11 36404431 36404731 -112378741 - AluSx SINE Alu -12 300 1 815 169 59 131 chr11 36404763 36404999 -112378473 - MER20 DNA MER1_type 0 219 1 1699 173 3 10 chr11 36406030 36406336 -112377136 + AluJo SINE Alu 1 304 -8 1710 136 0 0 chr11 36407087 36407345 -112376127 - AluSg SINE Alu -15 295 38 180 0 0 0 chr11 36407696 36407716 -112375756 + (T)n Simple_repeat Simple_repeat 1 20 0 2104 118 3 3 chr11 36407729 36408034 -112375438 + AluSx SINE Alu 1 305 -7 772 225 13 0 chr11 36408168 36408319 -112375153 - FRAM SINE Alu -23 153 1 195 262 136 78 chr11 36408503 36408606 -112374866 + L3 LINE CR1 1229 1337 -240 2185 114 0 3 chr11 36409016 36409323 -112374149 - AluSq SINE Alu -7 306 1 388 245 149 60 chr11 36409355 36409503 -112373969 - L3 LINE CR1 -69 1508 1374 2086 110 3 3 chr11 36409503 36409803 -112373669 + AluSx SINE Alu 1 300 -12 388 245 149 60 chr11 36409803 36409903 -112373569 - L3 LINE CR1 -203 1374 1238 2543 49 0 0 chr11 36410159 36410464 -112373008 + AluY SINE Alu 1 305 -6 22 80 0 0 chr11 36410789 36410839 -112372633 + AT_rich Low_complexity Low_complexity 1 50 0 205 321 37 0 chr11 36411174 36411255 -112372217 + MIR SINE MIR 90 173 -89 1520 108 124 12 chr11 36411624 36411883 -112371589 - AluSg1 SINE Alu -21 288 1 2363 62 0 10 chr11 36412770 36413077 -112370395 - AluY SINE Alu -7 304 1 1041 162 0 46 chr11 36413190 36413387 -112370085 - MER5A DNA MER1_type -1 188 1 1275 155 61 84 chr11 36413808 36414105 -112369367 - AluJb SINE Alu -12 290 1 2031 104 0 7 chr11 36414126 36414447 -112369025 - AluSg SINE Alu 0 310 1 1732 108 64 47 chr11 36414450 36414746 -112368726 - AluSg SINE Alu -8 302 2 1922 149 7 0 chr11 36414747 36415043 -112368429 - AluSx SINE Alu -12 300 3 1266 191 42 32 chr11 36415305 36415614 -112367858 - AluJo SINE Alu 0 312 1 1139 256 158 75 chr11 36415752 36416298 -112367174 - MLT1G LTR MaLR 0 590 5 2110 105 7 0 chr11 36416967 36417263 -112366209 - AluSg SINE Alu -12 298 1 24 0 0 0 chr11 36417307 36417331 -112366141 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr11 36417723 36417753 -112365719 + (A)n Simple_repeat Simple_repeat 1 30 0 1665 176 7 4 chr11 36418239 36418511 -112364961 - AluSx SINE Alu -39 273 1 2294 102 3 0 chr11 36418524 36418817 -112364655 - AluSp SINE Alu -19 294 1 2083 128 7 0 chr11 36418817 36419106 -112364366 - AluSx SINE Alu -21 291 1 443 281 9 0 chr11 36419376 36419490 -112363982 + MIR3 SINE MIR 82 196 -12 2361 101 0 3 chr11 36419497 36419803 -112363669 + AluSx SINE Alu 1 305 -7 1555 104 36 0 chr11 36419893 36420115 -112363357 + MER30 DNA MER1_type 1 230 0 2370 92 7 0 chr11 36420259 36420565 -112362907 + AluSg SINE Alu 1 308 -2 756 145 140 55 chr11 36420634 36420834 -112362638 + L1ME1 LINE L1 5800 6016 -150 637 235 7 7 chr11 36420834 36420987 -112362485 + L1MA10 LINE L1 6175 6327 -7 2086 140 6 16 chr11 36421062 36421377 -112362095 + AluJo SINE Alu 1 312 0 187 203 31 0 chr11 36421439 36421503 -112361969 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2428 94 19 0 chr11 36421884 36422191 -112361281 - AluSq SINE Alu 0 313 1 2262 78 0 39 chr11 36422204 36422510 -112360962 - AluY SINE Alu -17 294 1 2022 151 20 0 chr11 36422996 36423301 -112360171 - AluSx SINE Alu -1 311 1 628 300 99 73 chr11 36423633 36424170 -112359302 + MLT1K LTR MaLR 35 585 -3 445 321 47 31 chr11 36424511 36424573 -112358899 - MIR SINE MIR -17 245 185 351 0 0 0 chr11 36424573 36424612 -112358860 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2223 92 3 7 chr11 36424614 36424897 -112358575 - AluSp SINE Alu -31 282 1 445 321 47 31 chr11 36424897 36425024 -112358448 - MIR SINE MIR -77 185 50 195 266 127 0 chr11 36425671 36425750 -112357722 - MIR SINE MIR -18 244 156 1984 149 0 0 chr11 36425788 36426083 -112357389 + AluJb SINE Alu 2 296 -16 2446 100 0 0 chr11 36426330 36426640 -112356832 - AluSg SINE Alu 0 310 1 481 297 39 0 chr11 36426758 36426886 -112356586 - L2 LINE L2 -3 3269 3137 2339 88 7 3 chr11 36427006 36427311 -112356161 + AluSp SINE Alu 1 306 -7 1383 236 183 60 chr11 36427585 36427658 -112355814 - LTR41 LTR ERVL -1 772 709 2103 110 7 35 chr11 36427658 36427968 -112355504 + AluSx SINE Alu 1 301 -11 1508 105 5 0 chr11 36427968 36428158 -112355314 + AluSx SINE Alu 1 192 -120 1383 236 183 60 chr11 36428158 36428614 -112354858 - LTR41 LTR ERVL -64 709 135 1833 47 177 12 chr11 36428614 36428868 -112354604 + AluY SINE Alu 1 296 -15 1383 236 183 60 chr11 36428868 36429023 -112354449 - LTR41 LTR ERVL -638 135 1 28 0 0 0 chr11 36429142 36429170 -112354302 + AT_rich Low_complexity Low_complexity 1 28 0 517 275 140 0 chr11 36429382 36429560 -112353912 + MIR SINE MIR 20 222 -40 308 272 112 8 chr11 36430101 36430226 -112353246 - MIR3 SINE MIR -21 187 50 2265 82 7 0 chr11 36430257 36430539 -112352933 + AluSg SINE Alu 1 284 -26 394 128 17 211 chr11 36431094 36431248 -112352224 + L1MD1 LINE L1 6117 6226 -16 2365 96 0 13 chr11 36431370 36431683 -112351789 + AluSq SINE Alu 1 309 -4 2356 105 0 3 chr11 36432477 36432782 -112350690 - AluSq SINE Alu -9 304 1 23 33 0 0 chr11 36432878 36432908 -112350564 + AT_rich Low_complexity Low_complexity 1 30 0 762 213 118 147 chr11 36433100 36433581 -112349891 + MLT1H1 LTR MaLR 3 480 -75 1395 94 0 0 chr11 36433581 36433751 -112349721 - AluSg/x SINE Alu -16 296 127 537 113 12 12 chr11 36433782 36433862 -112349610 + AluSg SINE Alu 4 83 -227 337 300 0 0 chr11 36434019 36434109 -112349363 + L1MC4 LINE L1 6615 6704 -1338 183 162 0 0 chr11 36434109 36434146 -112349326 + (TA)n Simple_repeat Simple_repeat 2 38 0 3628 210 31 37 chr11 36434147 36434985 -112348487 - MER21B LTR ERV1 -11 852 20 457 210 40 10 chr11 36434987 36435087 -112348385 - MER21B LTR ERV1 -760 103 1 314 108 5 0 chr11 36435087 36435140 -112348332 - MER63 DNA MER1_type -393 43 8 234 62 0 0 chr11 36435295 36435327 -112348145 + (A)n Simple_repeat Simple_repeat 1 32 0 203 237 0 0 chr11 36435824 36435862 -112347610 + polypurine Low_complexity Low_complexity 3 40 0 2488 87 0 0 chr11 36435896 36436206 -112347266 + AluSg SINE Alu 1 310 0 330 280 80 27 chr11 36436539 36436632 -112346840 + MIR SINE MIR 105 210 -52 1953 147 13 13 chr11 36436632 36436944 -112346528 + AluJb SINE Alu 1 312 0 330 280 80 27 chr11 36436944 36437000 -112346472 + MIR SINE MIR 210 262 0 2008 145 7 3 chr11 36437691 36438001 -112345471 - AluSx SINE Alu -1 311 1 2301 90 76 69 chr11 36438002 36438244 -112345228 + Tigger3(Golem) DNA MER2_type 2328 2576 -452 854 173 0 0 chr11 36438244 36438377 -112345095 - FLAM_C SINE Alu 0 133 1 2301 90 76 69 chr11 36438377 36438557 -112344915 + Tigger3(Golem) DNA MER2_type 2576 2753 -275 238 173 0 0 chr11 36438553 36438605 -112344867 - AluSq SINE Alu 0 303 252 * 1418 75 0 48 chr11 36438616 36438804 -112344668 - AluSq SINE Alu -134 179 1 306 170 0 0 chr11 36438804 36438857 -112344615 + AluSc SINE Alu 187 239 -60 1990 133 0 0 chr11 36438863 36439149 -112344323 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 499 244 134 0 chr11 36439270 36439397 -112344075 - MIR SINE MIR -72 190 47 322 273 0 0 chr11 36440107 36440184 -112343288 + L2 LINE L2 3231 3307 -6 2013 160 0 0 chr11 36440645 36440945 -112342527 - AluJb SINE Alu -10 302 3 626 255 28 75 chr11 36441596 36441878 -112341594 + MER102b DNA MER1_type 73 341 0 2132 138 3 0 chr11 36442680 36442977 -112340495 - AluSx SINE Alu -14 298 1 374 269 41 28 chr11 36443173 36443318 -112340154 + MIR SINE MIR 104 250 -12 1698 131 113 7 chr11 36443351 36443633 -112339839 + AluJb SINE Alu 1 312 0 2630 130 22 49 chr11 36444023 36444178 -112339294 - L1MA2 LINE L1 0 6304 6146 198 0 0 0 chr11 36444178 36444200 -112339272 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2076 107 7 7 chr11 36444200 36444481 -112338991 - AluSx SINE Alu -31 281 1 2630 130 22 49 chr11 36444481 36444837 -112338635 - L1MA2 LINE L1 -157 6147 5805 2187 102 10 3 chr11 36444837 36445130 -112338342 - AluSx SINE Alu -17 295 1 2630 130 22 49 chr11 36445130 36445163 -112338309 - L1MA2 LINE L1 -499 5805 5773 807 285 17 7 chr11 36445589 36445887 -112337585 + AluSq SINE Alu 3 303 -10 1254 278 14 33 chr11 36445896 36446263 -112337209 - MLT1I LTR MaLR -49 360 1 3668 194 42 35 chr11 36446348 36447128 -112336344 - MER63C DNA MER1_type -130 930 142 2228 120 0 3 chr11 36447128 36447437 -112336035 + AluSx SINE Alu 5 312 0 3668 194 42 35 chr11 36447437 36447532 -112335940 - MER63C DNA MER1_type -918 142 49 324 200 0 0 chr11 36447534 36447609 -112335863 + (TA)n Simple_repeat Simple_repeat 1 75 0 255 284 23 0 chr11 36447610 36447698 -112335774 - L1MC4 LINE L1 -1339 6703 6614 242 292 0 0 chr11 36447704 36447793 -112335679 - L1MC4 LINE L1 -1339 6703 6615 225 211 0 63 chr11 36447777 36447872 -112335600 - L1MC4 LINE L1 -1340 6702 6614 * 233 289 22 0 chr11 36447857 36447947 -112335525 + L1MC4 LINE L1 6615 6706 -1336 189 262 0 0 chr11 36447947 36448008 -112335464 + (TA)n Simple_repeat Simple_repeat 2 62 0 245 286 60 24 chr11 36448363 36448447 -112335025 + MIR SINE MIR 105 191 -71 835 144 0 0 chr11 36448456 36448574 -112334898 + FLAM_C SINE Alu 1 118 -25 942 202 33 0 chr11 36449796 36449979 -112333493 + MER5A DNA MER1_type 1 189 0 337 307 51 89 chr11 36449992 36450193 -112333279 + L2 LINE L2 189 371 -2943 1729 177 0 11 chr11 36450193 36450475 -112332997 - AluJo SINE Alu -31 281 3 337 307 51 89 chr11 36450475 36450644 -112332828 + L2 LINE L2 371 545 -2769 1553 95 5 5 chr11 36450646 36450856 -112332616 + MLT2B1 LTR ERVL 2 211 -309 843 147 0 31 chr11 36450857 36450986 -112332486 + FLAM_C SINE Alu 2 126 -17 639 171 8 73 chr11 36450991 36451018 -112332454 + MLT2B1 LTR ERVL 199 226 -289 249 33 0 0 chr11 36451018 36451048 -112332424 + (TC)n Simple_repeat Simple_repeat 2 31 0 2229 107 3 0 chr11 36451048 36451338 -112332134 - AluSp SINE Alu -22 291 1 639 171 8 73 chr11 36451338 36451432 -112332040 + MLT2B1 LTR ERVL 224 313 -202 448 297 33 6 chr11 36451462 36451644 -112331828 - L2 LINE L2 -557 2757 2571 2196 120 3 0 chr11 36451651 36451952 -112331520 - AluSx SINE Alu -10 302 1 352 215 51 13 chr11 36451992 36452071 -112331401 + MER5A DNA MER1_type 8 89 -100 374 286 104 11 chr11 36452359 36452541 -112330931 + L2 LINE L2 1721 1919 -1395 1200 290 114 40 chr11 36452847 36453223 -112330249 + L2 LINE L2 1930 2276 -1038 2045 108 0 14 chr11 36453223 36453542 -112329930 + AluSq SINE Alu 1 315 0 1200 290 114 40 chr11 36453542 36453899 -112329573 + L2 LINE L2 2276 2719 -595 450 0 0 0 chr11 36454280 36454330 -112329142 + (TA)n Simple_repeat Simple_repeat 2 51 0 2267 97 0 10 chr11 36454668 36454957 -112328515 - AluSx SINE Alu -16 296 11 1102 136 0 0 chr11 36455047 36455201 -112328271 - AluSg/x SINE Alu -12 300 147 625 287 84 35 chr11 36456445 36456731 -112326741 + MLT1I LTR MaLR 19 318 -91 1862 137 42 7 chr11 36456740 36457025 -112326447 - AluSx SINE Alu -17 295 1 526 208 54 71 chr11 36457042 36457210 -112326262 - MER58B DNA MER1_type 0 341 177 235 270 0 16 chr11 36457237 36457300 -112326172 - MER5A DNA MER1_type 0 189 128 754 235 290 5 chr11 36457480 36457921 -112325551 + L2 LINE L2 2748 3309 -4 33 90 0 0 chr11 36459445 36459534 -112323938 + GC_rich Low_complexity Low_complexity 1 89 0 26 30 0 0 chr11 36459774 36459807 -112323665 + GC_rich Low_complexity Low_complexity 1 33 0 2242 98 3 0 chr11 36461705 36462000 -112321472 - AluSp SINE Alu -17 296 1 858 167 6 56 chr11 36462424 36462604 -112320868 - AluSg/x SINE Alu -5 307 137 2047 111 14 17 chr11 36462606 36462903 -112320569 - AluSq SINE Alu -17 296 1 2111 116 10 13 chr11 36464985 36465296 -112318176 - AluSq SINE Alu -3 310 1 2390 86 0 3 chr11 36465422 36465713 -112317759 - AluSx SINE Alu -22 290 1 1989 100 0 4 chr11 36466547 36466807 -112316665 - AluSg SINE Alu -14 296 38 189 0 0 0 chr11 36467156 36467177 -112316295 + (T)n Simple_repeat Simple_repeat 1 21 0 2217 110 7 3 chr11 36467190 36467489 -112315983 + AluSx SINE Alu 1 300 -12 299 218 154 13 chr11 36467814 36467892 -112315580 - Tigger3(Golem) DNA MER2_type -2940 89 1 2170 133 0 0 chr11 36467950 36468252 -112315220 - AluSx SINE Alu -10 302 1 2343 72 27 0 chr11 36468949 36469241 -112314231 - AluSq SINE Alu -13 300 1 257 106 43 64 chr11 36469242 36469289 -112314183 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36469733 36469768 -112313704 + AT_rich Low_complexity Low_complexity 1 35 0 1907 168 28 3 chr11 36469856 36470174 -112313298 + AluJb SINE Alu 1 293 -19 317 207 0 0 chr11 36470373 36470431 -112313041 - MLT1H1 LTR MaLR -2 553 496 306 270 0 0 chr11 36470433 36470528 -112312944 - AluSg/x SINE Alu 0 304 210 358 114 0 127 chr11 36522698 36522777 -112260695 + Alu SINE Alu 234 302 0 731 180 0 43 chr11 36522955 36523094 -112260378 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr11 36523290 36523319 -112260153 + AT_rich Low_complexity Low_complexity 1 29 0 275 189 200 0 chr11 36524562 36524657 -112258815 + L1 LINE L1 2918 3031 -3115 2159 138 0 0 chr11 36524752 36525057 -112258415 - AluSx SINE Alu -7 305 1 1952 144 0 10 chr11 36525829 36526128 -112257344 - AluSx SINE Alu -14 298 3 1385 183 7 60 chr11 36526338 36526639 -112256833 - AluJo SINE Alu -27 285 1 583 174 39 65 chr11 36526657 36526812 -112256660 - FRAM SINE Alu -6 170 20 899 112 83 65 chr11 36527159 36527328 -112256144 - AluSx SINE Alu -67 243 72 204 317 20 30 chr11 36527330 36527431 -112256041 + L2 LINE L2 2902 3001 -312 330 176 0 71 chr11 36527455 36527540 -112255932 - L1MA8 LINE L1 -1 6290 6212 355 234 0 0 chr11 36527541 36527618 -112255854 + FRAM/FAM SINE Alu 3 79 -87 446 89 0 156 chr11 36527656 36527746 -112255726 - AluSc SINE Alu -61 248 173 529 84 0 0 chr11 36527751 36527822 -112255650 - AluSx SINE Alu -241 72 2 1509 153 57 43 chr11 36527996 36528278 -112255194 + AluJo SINE Alu 1 286 -26 1720 169 26 13 chr11 36528335 36528528 -112254944 - AluJb SINE Alu 0 312 112 189 0 0 0 chr11 36528528 36528549 -112254923 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1720 169 26 13 chr11 36528549 36528663 -112254809 - AluJb SINE Alu -200 112 1 741 94 24 39 chr11 36532404 36532531 -112250941 + L2 LINE L2 3189 3313 0 25 0 0 0 chr11 36534589 36534614 -112248858 + AT_rich Low_complexity Low_complexity 1 25 0 188 425 0 0 chr11 36536469 36536542 -112246930 - L2 LINE L2 -40 3232 3160 2470 91 3 0 chr11 36536924 36537233 -112246239 + AluSg SINE Alu 1 310 0 510 283 266 29 chr11 36537433 36538202 -112245270 + L2 LINE L2 2050 3074 -239 1832 109 94 7 chr11 36540499 36540775 -112242697 - AluSx SINE Alu -11 301 2 331 134 171 37 chr11 36540925 36541007 -112242465 - L1ME4a LINE L1 -63 6058 5966 1105 103 0 2 chr11 36541115 36541351 -112242121 + AluSc SINE Alu 2 288 -21 379 286 45 32 chr11 36542044 36542198 -112241274 + MIR3 SINE MIR 46 201 -7 285 98 0 0 chr11 36544012 36544053 -112239419 + (T)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr11 36544187 36544210 -112239262 + AT_rich Low_complexity Low_complexity 1 23 0 184 325 12 0 chr11 36544740 36544820 -112238652 - MIR3 SINE MIR -24 184 104 201 74 0 0 chr11 36546254 36546281 -112237191 + (TG)n Simple_repeat Simple_repeat 2 28 0 702 123 51 51 chr11 36546990 36547128 -112236344 + FLAM_C SINE Alu 2 139 -4 951 272 81 44 chr11 36547989 36548338 -112235134 + L2 LINE L2 2841 3213 -100 2232 98 0 11 chr11 36548338 36548648 -112234824 + AluSx SINE Alu 1 307 0 951 272 81 44 chr11 36548648 36548753 -112234719 + L2 LINE L2 3213 3313 0 335 255 270 19 chr11 36548793 36549056 -112234416 + L2 LINE L2 2985 3313 0 201 280 110 10 chr11 36549537 36549637 -112233835 + MIR SINE MIR 36 145 -63 2153 115 3 13 chr11 36549874 36550052 -112233420 - AluSx SINE Alu 0 312 137 2145 142 0 0 chr11 36550052 36550362 -112233110 - AluSx SINE Alu -2 310 1 2153 115 3 13 chr11 36550362 36550495 -112232977 - AluSx SINE Alu -175 137 4 368 230 148 22 chr11 36550540 36550675 -112232797 - MER103 DNA DNA -7 159 8 1005 178 23 32 chr11 36550753 36550972 -112232500 + MER20 DNA MER1_type 1 217 -2 831 216 0 13 chr11 36552222 36552375 -112231097 - FRAM SINE Alu -24 152 2 269 303 117 14 chr11 36553236 36553381 -112230091 - L1MC/D LINE L1 -2047 5761 5602 407 255 64 71 chr11 36553391 36553579 -112229893 - L1MC/D LINE L1 -2248 5560 5373 218 32 32 0 chr11 36553579 36553610 -112229862 + (TTG)n Simple_repeat Simple_repeat 1 32 0 407 255 64 71 chr11 36553610 36553688 -112229784 - L1MC/D LINE L1 -2435 5373 5296 1133 237 106 75 chr11 36554098 36555048 -112228424 - L2 LINE L2 -42 3271 2352 2552 82 0 0 chr11 36555048 36555352 -112228120 + AluSc SINE Alu 1 304 -5 1133 237 106 75 chr11 36555352 36555363 -112228109 - L2 LINE L2 -961 2352 2343 2373 101 0 0 chr11 36555363 36555661 -112227811 + AluSq SINE Alu 1 298 -15 1133 237 106 75 chr11 36555661 36555775 -112227697 - L2 LINE L2 -970 2343 2170 443 261 15 31 chr11 36556642 36556772 -112226700 - MIR SINE MIR -65 143 16 2347 63 28 0 chr11 36557357 36557643 -112225829 + AluSp SINE Alu 1 294 -19 2075 110 0 56 chr11 36559150 36559469 -112224003 + AluSx SINE Alu 1 301 -11 526 278 91 27 chr11 36559958 36560277 -112223195 - L1ME LINE L1 -513 5649 5311 489 245 80 13 chr11 36560578 36560788 -112222684 - MIR SINE MIR -28 234 10 32 43 0 0 chr11 36561445 36561491 -112221981 + AT_rich Low_complexity Low_complexity 1 46 0 2393 94 7 0 chr11 36561542 36561850 -112221622 + AluSg SINE Alu 1 310 0 300 282 27 40 chr11 36562133 36562148 -112221324 - L1MA10 LINE L1 -2 6332 6318 2839 199 48 28 chr11 36562148 36563065 -112220407 - L1MB8 LINE L1 -9 6155 5197 2354 109 0 3 chr11 36563065 36563376 -112220096 - AluSx SINE Alu -2 310 1 2839 199 48 28 chr11 36563376 36563427 -112220045 - L1MB8 LINE L1 -967 5197 5148 244 264 182 6 chr11 36563953 36564112 -112219360 - MIR SINE MIR -74 188 2 2454 91 3 0 chr11 36565142 36565451 -112218021 - AluSg SINE Alu 0 310 1 417 248 41 0 chr11 36567071 36567192 -112216280 - L1ME LINE L1 -345 5817 5692 2311 64 0 40 chr11 36567338 36567635 -112215837 + AluY SINE Alu 1 285 -26 929 207 12 0 chr11 36568903 36569072 -112214400 + MER5A DNA MER1_type 19 189 0 1502 133 0 0 chr11 36569237 36569447 -112214025 + AluJb SINE Alu 90 299 -13 2255 121 0 0 chr11 36569553 36569850 -112213622 - AluSx SINE Alu -15 297 1 964 227 145 93 chr11 36570744 36571872 -112211600 - L2 LINE L2 -801 2513 1327 216 236 0 18 chr11 36573416 36573471 -112210001 + (TA)n Simple_repeat Simple_repeat 1 54 0 256 319 92 18 chr11 36574079 36574242 -112209230 - MIR SINE MIR -15 247 73 234 0 0 0 chr11 36574790 36574816 -112208656 + (CA)n Simple_repeat Simple_repeat 1 26 0 369 0 0 0 chr11 36574879 36574920 -112208552 + (CA)n Simple_repeat Simple_repeat 1 41 0 405 344 49 16 chr11 36577312 36577495 -112205977 - MIR SINE MIR -71 191 3 462 177 88 0 chr11 36577505 36577618 -112205854 - Charlie1b DNA MER1_type 0 523 401 933 105 7 28 chr11 36577621 36577764 -112205708 + FLAM_C SINE Alu 1 140 -3 1085 204 127 25 chr11 36577767 36578130 -112205342 - Charlie1b DNA MER1_type -119 404 5 309 281 99 16 chr11 36579306 36579427 -112204045 + L2 LINE L2 3134 3264 -8 21 0 0 0 chr11 36580985 36581006 -112202466 + AT_rich Low_complexity Low_complexity 1 21 0 214 291 101 13 chr11 36581067 36581146 -112202326 - MIR3 SINE MIR 0 208 123 612 261 113 20 chr11 36581208 36581403 -112202069 + MIR SINE MIR 28 240 -22 1466 176 35 18 chr11 36581501 36581785 -112201687 - AluJo SINE Alu -23 289 1 957 166 19 0 chr11 36583664 36583821 -112199651 - FRAM SINE Alu -21 155 1 291 361 48 36 chr11 36586241 36586407 -112197065 + L2 LINE L2 3096 3263 -9 362 316 110 47 chr11 36586695 36586859 -112196613 - L2 LINE L2 -456 2858 2706 1367 166 123 0 chr11 36586859 36587112 -112196360 - AluJb SINE Alu -28 284 1 362 316 110 47 chr11 36587112 36587412 -112196060 - L2 LINE L2 -608 2706 2365 251 273 50 30 chr11 36587442 36587541 -112195931 - MIR SINE MIR -150 112 12 264 291 32 16 chr11 36588487 36588590 -112194882 - MIR SINE MIR -68 140 79 2299 83 3 3 chr11 36589992 36590292 -112193180 - AluSp SINE Alu -13 300 1 429 144 115 22 chr11 36590301 36590440 -112193032 + Charlie5 DNA MER1_type 2455 2606 -6 290 302 47 0 chr11 36591221 36591350 -112192122 + L2 LINE L2 2550 2684 -630 735 236 70 15 chr11 36591376 36591575 -112191897 + MIR SINE MIR 47 256 -6 2344 68 10 0 chr11 36591601 36591896 -112191576 + AluY SINE Alu 1 298 -13 347 229 73 28 chr11 36592354 36592463 -112191009 - MER5A DNA MER1_type -70 119 6 236 272 5 43 chr11 36594089 36594273 -112189199 + (TGGG)n Simple_repeat Simple_repeat 4 180 0 * 288 267 17 28 chr11 36594137 36594317 -112189155 + (TG)n Simple_repeat Simple_repeat 2 179 0 353 298 117 29 chr11 36596542 36596713 -112186759 + MIR SINE MIR 64 249 -13 256 250 0 0 chr11 36597911 36597971 -112185501 + MIR SINE MIR 33 92 -116 351 297 75 16 chr11 36599171 36599342 -112184130 + MIR3 SINE MIR 1 177 -31 267 263 105 0 chr11 36599978 36600054 -112183418 - L2 LINE L2 -44 3228 3145 584 276 52 26 chr11 36601684 36601876 -112181596 + MIR SINE MIR 23 219 -43 376 205 86 51 chr11 36602022 36602139 -112181333 - MIR3 SINE MIR -45 163 43 464 260 197 45 chr11 36602836 36603059 -112180413 - MIR SINE MIR 0 262 6 968 227 61 12 chr11 36603562 36603809 -112179663 + MIR SINE MIR 1 259 -3 338 260 78 13 chr11 36603855 36604009 -112179463 + L2 LINE L2 3059 3222 -91 1946 124 4 0 chr11 36604769 36605043 -112178429 + AluSx SINE Alu 10 284 -28 189 0 0 0 chr11 36605055 36605076 -112178396 + (TAAG)n Simple_repeat Simple_repeat 1 21 0 2250 108 3 0 chr11 36605558 36605865 -112177607 + AluSx SINE Alu 1 308 -4 225 0 0 0 chr11 36605865 36605890 -112177582 + (TA)n Simple_repeat Simple_repeat 2 26 0 402 21 0 0 chr11 36605910 36605957 -112177515 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 639 315 43 21 chr11 36606051 36606286 -112177186 + MIR SINE MIR 18 257 -5 190 298 85 32 chr11 36607320 36607414 -112176058 + MIR SINE MIR 120 218 -44 2289 66 33 3 chr11 36607525 36607827 -112175645 + AluY SINE Alu 1 311 0 2070 129 70 0 chr11 36608719 36609060 -112174412 - MER47A DNA MER2_type -1 365 1 284 339 70 74 chr11 36609209 36609470 -112174002 + L2 LINE L2 2819 3079 -193 2268 116 0 0 chr11 36609470 36609780 -112173692 + AluSg SINE Alu 1 310 0 284 339 70 74 chr11 36609780 36609964 -112173508 + L2 LINE L2 3079 3262 -10 979 164 0 0 chr11 36609964 36610135 -112173337 + FRAM SINE Alu 1 170 -6 225 200 0 0 chr11 36610859 36610899 -112172573 + MLT1J LTR MaLR 95 134 -377 1175 150 10 5 chr11 36611143 36611336 -112172136 - AluJb SINE Alu -118 194 1 635 125 7 49 chr11 36612209 36612264 -112171208 - Charlie1 DNA MER1_type -1 2760 2704 2050 136 0 16 chr11 36612264 36612572 -112170900 + AluSx SINE Alu 1 303 -9 635 125 7 49 chr11 36612572 36612660 -112170812 - Charlie1 DNA MER1_type -57 2704 2623 * 1009 214 57 0 chr11 36612644 36612873 -112170599 - Charlie1 DNA MER1_type -2519 242 1 220 256 61 24 chr11 36613063 36613145 -112170327 + MIR SINE MIR 43 127 -81 740 298 57 16 chr11 36613247 36613495 -112169977 + MIR SINE MIR 5 262 0 360 225 78 39 chr11 36614113 36614242 -112169230 - MIR SINE MIR -58 150 17 2016 122 7 3 chr11 36614378 36614674 -112168798 - AluSc SINE Alu -12 297 1 246 32 0 0 chr11 36614709 36614740 -112168732 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 869 295 34 0 chr11 36616228 36616462 -112167010 - MIR SINE MIR -3 259 18 384 254 37 67 chr11 36616544 36616576 -112166896 + MER94 DNA DNA 5 36 -98 1806 159 3 3 chr11 36616576 36616872 -112166600 - AluJb SINE Alu -16 296 1 384 254 37 67 chr11 36616872 36616973 -112166499 + MER94 DNA DNA 36 134 0 285 310 135 15 chr11 36617040 36617240 -112166232 + L2 LINE L2 3041 3264 -49 233 29 29 0 chr11 36617371 36617405 -112166067 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 656 142 213 89 chr11 36617410 36617579 -112165893 - AluJb SINE Alu -36 276 87 438 273 87 12 chr11 36618928 36619089 -112164383 - MIR SINE MIR -13 249 77 1809 171 41 3 chr11 36619129 36619445 -112164027 + L1MA6 LINE L1 5971 6298 -2 305 300 66 2 chr11 36620476 36620608 -112162864 + MIR SINE MIR 46 183 -68 1720 152 35 3 chr11 36620956 36621246 -112162226 - AluJo SINE Alu 0 312 14 207 182 0 23 chr11 36621312 36621356 -112162116 + GA-rich Low_complexity Low_complexity 4 46 0 434 320 51 15 chr11 36621521 36621718 -112161754 - MIR SINE MIR -55 207 4 319 301 153 29 chr11 36621725 36621934 -112161538 - L2 LINE L2 -1 3312 3078 360 345 81 0 chr11 36622376 36622524 -112160948 - MIR SINE MIR -52 210 51 761 82 0 0 chr11 36622645 36622742 -112160730 + HY3 scRNA scRNA 2 98 -3 200 0 100 0 chr11 36622742 36622772 -112160700 + A-rich Low_complexity Low_complexity 2 34 0 1733 182 3 0 chr11 36622791 36623082 -112160390 + AluJb SINE Alu 2 293 -19 678 183 23 202 chr11 36623317 36623427 -112160045 - MIR SINE MIR -25 237 197 2091 125 0 4 chr11 36623427 36623708 -112159764 + AluSx SINE Alu 1 280 -32 678 183 23 202 chr11 36623708 36623854 -112159618 - MIR SINE MIR -65 197 27 284 236 0 16 chr11 36624102 36624229 -112159243 + (TAG)n Simple_repeat Simple_repeat 1 125 0 575 233 129 0 chr11 36624358 36624521 -112158951 - MIR SINE MIR -9 253 70 1028 147 13 0 chr11 36624603 36624753 -112158719 + FRAM SINE Alu 10 161 -15 1791 170 0 7 chr11 36625483 36625772 -112157700 + AluJb SINE Alu 4 290 -22 193 280 118 32 chr11 36625798 36625891 -112157581 - MIR SINE MIR -116 146 46 251 311 193 15 chr11 36626949 36627084 -112156388 + MIR SINE MIR 1 159 -103 247 233 67 17 chr11 36627162 36627222 -112156250 - MIR SINE MIR -92 170 108 551 269 54 0 chr11 36629119 36629286 -112154186 + MIR SINE MIR 74 249 -13 23 0 0 0 chr11 36629678 36629701 -112153771 + AT_rich Low_complexity Low_complexity 1 23 0 2437 74 0 3 chr11 36629761 36630057 -112153415 + AluY SINE Alu 1 295 -16 262 270 14 14 chr11 36630092 36630166 -112153306 - MER91A DNA MER1_type -122 74 1 181 30 91 0 chr11 36630728 36630761 -112152711 + (CAGT)n Simple_repeat Simple_repeat 3 38 0 319 306 149 0 chr11 36631508 36631629 -112151843 - MIR SINE MIR -7 255 117 2028 125 3 31 chr11 36631633 36631954 -112151518 + AluSx SINE Alu 1 312 0 312 253 48 0 chr11 36632529 36632612 -112150860 + L2 LINE L2 3186 3272 0 509 254 8 8 chr11 36632909 36633031 -112150441 - MER5B DNA MER1_type -54 124 3 539 259 58 0 chr11 36633200 36633339 -112150133 + MIR SINE MIR 100 246 -16 384 353 90 12 chr11 36634160 36634327 -112149145 - MIR SINE MIR -71 191 12 896 258 118 0 chr11 36634333 36634620 -112148852 + MER5C DNA MER1_type 4 324 0 1116 257 121 43 chr11 36635500 36636050 -112147422 - L2 LINE L2 -35 3278 2677 2052 132 7 0 chr11 36636050 36636354 -112147118 + AluSx SINE Alu 1 306 0 1116 257 121 43 chr11 36636354 36636473 -112146999 - L2 LINE L2 -636 2677 2569 444 251 174 18 chr11 36636676 36636843 -112146629 + MIR SINE MIR 60 252 -10 265 256 24 24 chr11 36637081 36637163 -112146309 + MIR SINE MIR 31 112 -96 573 217 77 72 chr11 36637655 36637876 -112145596 - MER102a DNA MER1_type -5 325 104 282 323 77 8 chr11 36638546 36638676 -112144796 - L2 LINE L2 0 3272 3134 839 234 39 22 chr11 36639270 36639501 -112143971 + MIR SINE MIR 28 262 0 485 273 100 68 chr11 36639502 36639569 -112143903 - MIR SINE MIR -26 236 173 1874 109 20 76 chr11 36639569 36639895 -112143577 + AluSq SINE Alu 1 309 0 485 273 100 68 chr11 36639895 36640046 -112143426 - MIR SINE MIR -89 173 10 584 216 153 35 chr11 36641051 36641250 -112142222 - MIR SINE MIR 0 262 42 181 325 97 0 chr11 36641542 36641656 -112141816 - L3b LINE CR1 -194 1389 1265 434 256 111 45 chr11 36642149 36642438 -112141034 + L2 LINE L2 2357 2664 -650 1984 128 21 7 chr11 36642555 36642843 -112140629 + AluSx SINE Alu 1 292 -20 565 126 0 37 chr11 36643038 36643173 -112140299 + (TGGGGG)n Simple_repeat Simple_repeat 3 132 0 266 217 0 29 chr11 36643597 36643666 -112139806 + G-rich Low_complexity Low_complexity 3 69 0 242 281 49 0 chr11 36643939 36644021 -112139451 + MIR3 SINE MIR 116 201 -7 24 0 0 0 chr11 36644687 36644711 -112138761 + AT_rich Low_complexity Low_complexity 1 24 0 1681 203 3 7 chr11 36644860 36645160 -112138312 - AluJb SINE Alu -13 299 1 2088 89 29 58 chr11 36645362 36645675 -112137797 + AluSx SINE Alu 1 304 -8 2269 118 0 0 chr11 36645810 36646107 -112137365 - AluSx SINE Alu -15 297 1 572 292 12 12 chr11 36646199 36646367 -112137105 - MIR SINE MIR -72 190 23 2325 86 0 10 chr11 36646946 36647249 -112136223 + AluSx SINE Alu 1 300 -12 369 0 0 0 chr11 36647890 36647931 -112135541 + (CA)n Simple_repeat Simple_repeat 2 42 0 995 190 0 0 chr11 36648287 36648461 -112135011 - AluJb SINE Alu -5 307 134 757 263 38 14 chr11 36649330 36649539 -112133933 + MIR SINE MIR 36 249 -13 494 295 66 94 chr11 36649758 36650046 -112133426 - L2 LINE L2 0 3272 2993 1233 93 23 56 chr11 36650046 36650222 -112133250 - L1MC1 LINE L1 -297 6036 5867 2398 107 0 3 chr11 36650222 36650532 -112132940 + AluSq SINE Alu 1 309 -4 1233 93 23 56 chr11 36650532 36650570 -112132902 - L1MC1 LINE L1 -466 5867 5829 2570 170 6 31 chr11 36650570 36651047 -112132425 + MER66B LTR ERV1 22 486 0 3180 163 13 42 chr11 36651049 36651210 -112132262 - L1MC1 LINE L1 -505 5828 5664 2222 128 0 0 chr11 36651210 36651514 -112131958 - AluSx SINE Alu -7 305 2 3180 163 13 42 chr11 36651514 36652321 -112131151 - L1MC1 LINE L1 -669 5664 4893 2433 85 13 0 chr11 36652321 36652626 -112130846 + AluSp SINE Alu 1 309 -4 3180 163 13 42 chr11 36652626 36652730 -112130742 - L1MC1 LINE L1 -1440 4893 4788 298 305 211 23 chr11 36652756 36652884 -112130588 - L2 LINE L2 0 3272 3121 1518 141 18 128 chr11 36652931 36653024 -112130448 + MER7A DNA MER2_type 2 104 -2934 1796 180 33 0 chr11 36653024 36653324 -112130148 + AluJo SINE Alu 1 310 -2 1518 141 18 128 chr11 36653324 36653620 -112129852 + MER7A DNA MER2_type 104 346 0 360 259 63 118 chr11 36654117 36654464 -112129008 + MLT1L LTR MaLR 200 527 -88 185 0 40 0 chr11 36654473 36654498 -112128974 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2257 157 16 21 chr11 36654511 36654723 -112128749 - MLT1B LTR MaLR -2 388 177 2227 103 0 10 chr11 36654723 36655024 -112128448 - AluSg SINE Alu -12 298 1 2257 157 16 21 chr11 36655024 36655199 -112128273 - MLT1B LTR MaLR -213 177 3 2199 128 0 22 chr11 36655510 36655829 -112127643 + AluSx SINE Alu 1 312 0 2220 106 91 25 chr11 36655832 36656229 -112127243 - MER4B LTR ERV1 -187 423 1 619 217 23 8 chr11 36657772 36657784 -112125688 - AluJo SINE Alu -164 148 138 1418 172 93 11 chr11 36657784 36658063 -112125409 - AluJo SINE Alu -10 302 1 619 217 23 8 chr11 36658063 36658179 -112125293 - AluJo SINE Alu -174 138 18 358 325 62 12 chr11 36658359 36658519 -112124953 + MIR SINE MIR 77 244 -18 235 234 43 117 chr11 36658644 36658738 -112124734 + L2 LINE L2 3210 3296 -17 2452 90 3 0 chr11 36659227 36659537 -112123935 + AluSp SINE Alu 1 311 -2 2036 120 16 19 chr11 36659675 36659984 -112123488 + AluSx SINE Alu 1 308 -4 200 152 0 0 chr11 36660284 36660317 -112123155 - MIR SINE MIR -149 113 81 3487 147 42 52 chr11 36660397 36660541 -112122931 - L1MB7 LINE L1 -21 6163 6019 1833 141 43 0 chr11 36660541 36660818 -112122654 + AluSx SINE Alu 5 293 -19 1793 121 0 0 chr11 36660818 36661057 -112122415 + AluSg/x SINE Alu 71 310 0 3487 147 42 52 chr11 36661057 36661476 -112121996 - L1MB7 LINE L1 -164 6020 5599 2416 103 0 3 chr11 36661476 36661788 -112121684 - AluSx SINE Alu -1 311 1 2185 109 0 59 chr11 36661791 36662113 -112121359 - AluSx SINE Alu -9 303 1 1921 112 29 60 chr11 36662116 36662430 -112121042 - AluSq SINE Alu -9 304 1 3487 147 42 52 chr11 36662430 36662589 -112120883 - L1MB7 LINE L1 -589 5595 5438 2266 115 3 3 chr11 36662591 36662903 -112120569 + AluSx SINE Alu 1 312 0 2576 62 3 0 chr11 36662954 36663259 -112120213 + AluY SINE Alu 1 306 -5 328 229 38 17 chr11 36663450 36663581 -112119891 - L1ME4a LINE L1 -8 6103 1206 188 261 169 56 chr11 36664121 36664263 -112119209 + MIR SINE MIR 93 250 -12 252 209 0 0 chr11 36664578 36664621 -112118851 + L1MC4 LINE L1 6741 6783 -1259 934 155 0 0 chr11 36664621 36664763 -112118709 - FLAM_C SINE Alu 0 143 2 3561 170 144 48 chr11 36664763 36665315 -112118157 + L1MC3 LINE L1 6718 7216 -569 1507 118 0 5 chr11 36665315 36665519 -112117953 - AluSg/x SINE Alu -3 307 105 3561 170 144 48 chr11 36665519 36665918 -112117554 + L1MC3 LINE L1 7216 7760 -25 2237 110 0 3 chr11 36665921 36666220 -112117252 + AluSx SINE Alu 2 299 -13 1476 145 104 48 chr11 36666450 36666719 -112116753 + AluJb SINE Alu 5 288 -24 479 178 0 0 chr11 36667014 36667087 -112116385 - AluJ/FRAM SINE Alu -21 291 219 1704 139 19 85 chr11 36667087 36667403 -112116069 - AluJo SINE Alu -17 295 1 25 65 0 0 chr11 36667407 36667453 -112116019 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr11 36667505 36667529 -112115943 + AT_rich Low_complexity Low_complexity 1 24 0 2316 70 0 14 chr11 36668604 36668914 -112114558 - AluY SINE Alu 0 306 1 180 175 62 150 chr11 36668927 36669007 -112114465 + L2 LINE L2 3156 3228 -85 470 236 164 0 chr11 36669081 36669221 -112114251 + MIR SINE MIR 86 248 -14 489 204 23 68 chr11 36670824 36670956 -112112516 + MIR SINE MIR 81 206 -56 1117 125 18 0 chr11 36671027 36671195 -112112277 - AluSg/x SINE Alu -5 307 137 2183 83 17 24 chr11 36671379 36671667 -112111805 + AluSq SINE Alu 14 299 -14 693 93 19 0 chr11 36671717 36671825 -112111647 + L1MA3 LINE L1 6194 6303 -2 25 0 0 0 chr11 36671825 36671850 -112111622 + AT_rich Low_complexity Low_complexity 1 25 0 1178 249 163 15 chr11 36671866 36672276 -112111196 + L2 LINE L2 2838 3308 -5 263 287 176 9 chr11 36672378 36672486 -112110986 - MIR SINE MIR -65 143 18 2245 117 0 0 chr11 36672508 36672806 -112110666 - AluY SINE Alu -13 298 1 242 326 0 0 chr11 36672828 36672877 -112110595 + L2 LINE L2 3134 3182 -90 1712 131 65 24 chr11 36673091 36673382 -112110090 - AluJo SINE Alu -9 303 1 2235 96 3 10 chr11 36674357 36674648 -112108824 - AluSx SINE Alu -23 289 1 598 246 80 27 chr11 36674828 36675015 -112108457 + MIR SINE MIR 2 198 -64 742 147 0 9 chr11 36675364 36675480 -112107992 + FLAM_C SINE Alu 2 116 -17 353 303 97 19 chr11 36676505 36676660 -112106812 - MIR SINE MIR -19 243 77 1092 108 7 0 chr11 36677041 36677189 -112106283 - AluSg/x SINE Alu -27 283 135 204 291 47 12 chr11 36677381 36677467 -112106005 + MIR SINE MIR 131 219 -43 560 280 42 73 chr11 36678332 36678502 -112104970 + MIR SINE MIR 10 171 -91 1851 141 0 18 chr11 36678502 36678785 -112104687 + AluJb SINE Alu 24 301 -11 560 280 42 73 chr11 36678785 36678875 -112104597 + MIR SINE MIR 171 262 0 2587 81 3 0 chr11 36680073 36680381 -112103091 + AluSp SINE Alu 1 309 -4 2536 93 3 0 chr11 36680588 36680900 -112102572 - AluSp SINE Alu 0 313 1 2148 107 30 6 chr11 36681056 36681393 -112102079 + MER47A DNA MER2_type 22 366 0 413 251 12 123 chr11 36681479 36681650 -112101822 - MIR SINE MIR -3 259 108 207 0 0 0 chr11 36681850 36681873 -112101599 + (A)n Simple_repeat Simple_repeat 1 23 0 1405 181 72 11 chr11 36681873 36682138 -112101334 - AluJo SINE Alu -31 281 1 210 37 0 0 chr11 36682178 36682205 -112101267 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2317 89 7 0 chr11 36682602 36682904 -112100568 + AluSp SINE Alu 1 304 -9 904 168 52 0 chr11 36683407 36683562 -112099910 - FRAM SINE Alu -16 160 1 234 344 0 0 chr11 36684105 36684169 -112099303 + L2 LINE L2 3245 3308 -5 754 241 73 17 chr11 36684544 36684776 -112098696 - MIR SINE MIR -15 247 3 2333 105 0 0 chr11 36687149 36687445 -112096027 + AluSg SINE Alu 1 296 -14 428 252 39 0 chr11 36687825 36687928 -112095544 - MIR SINE MIR -18 244 138 1962 141 20 20 chr11 36688003 36688301 -112095171 - AluJb SINE Alu -14 298 1 619 193 90 14 chr11 36688348 36688424 -112095048 + MER3 DNA MER1_type 50 119 -90 2182 109 31 7 chr11 36688424 36688718 -112094754 - AluSx SINE Alu -11 301 1 619 193 90 14 chr11 36688718 36688786 -112094686 + MER3 DNA MER1_type 119 205 -4 215 192 137 14 chr11 36688834 36688907 -112094565 - MIR SINE MIR -71 191 110 1929 121 3 78 chr11 36689248 36689570 -112093902 - AluSx SINE Alu -14 298 1 569 239 9 0 chr11 36691234 36691343 -112092129 + MER3 DNA MER1_type 14 123 -86 1880 151 3 36 chr11 36691348 36691652 -112091820 - AluJo SINE Alu -18 294 1 424 292 167 0 chr11 36692208 36692352 -112091120 + MIR SINE MIR 83 250 -12 2283 95 37 0 chr11 36692359 36692654 -112090818 - AluSq SINE Alu -7 306 1 210 254 0 18 chr11 36692829 36692884 -112090588 + (TTG)n Simple_repeat Simple_repeat 1 54 0 1866 173 13 13 chr11 36693561 36693862 -112089610 - AluJb SINE Alu -11 301 1 475 256 43 55 chr11 36694432 36694596 -112088876 - MIR3 SINE MIR -38 170 9 1449 149 64 8 chr11 36694641 36694876 -112088596 + AluSx SINE Alu 35 282 -30 264 291 136 10 chr11 36696089 36696192 -112087280 - MIR SINE MIR -116 146 31 192 167 0 0 chr11 36698002 36698038 -112085434 + MIR SINE MIR 110 145 -63 221 367 28 0 chr11 36698722 36698831 -112084641 + MIR SINE MIR 30 141 -67 2471 94 10 0 chr11 36699132 36699441 -112084031 + AluSp SINE Alu 1 312 -1 2356 97 0 0 chr11 36699441 36699739 -112083733 + AluSq SINE Alu 1 299 -14 382 277 78 43 chr11 36699794 36699825 -112083647 + MIR3 SINE MIR 51 79 -129 1944 179 0 6 chr11 36699825 36700138 -112083334 - AluJo SINE Alu -1 311 1 382 277 78 43 chr11 36700138 36700247 -112083225 + MIR3 SINE MIR 79 196 -12 1749 148 0 43 chr11 36701693 36701997 -112081475 - AluJb SINE Alu -21 291 1 403 298 70 0 chr11 36702201 36702315 -112081157 + MIR SINE MIR 34 155 -107 1058 201 47 114 chr11 36702369 36702772 -112080700 - MLT1B LTR MaLR -6 384 9 1180 247 102 0 chr11 36703232 36703536 -112079936 - MER58B DNA MER1_type -6 335 1 345 277 151 24 chr11 36703615 36703781 -112079691 - MIR SINE MIR -41 221 35 2416 98 0 0 chr11 36704088 36704393 -112079079 - AluSx SINE Alu -7 305 1 322 161 18 0 chr11 36704489 36704545 -112078927 - Charlie8 DNA MER1_type -2165 252 196 1915 148 22 0 chr11 36705210 36705488 -112077984 + AluJo SINE Alu 1 284 -28 441 0 0 0 chr11 36705488 36705537 -112077935 + (CATA)n Simple_repeat Simple_repeat 2 50 0 668 232 12 18 chr11 36705834 36705998 -112077474 + MIR SINE MIR 96 258 -4 441 242 0 87 chr11 36706015 36706164 -112077308 - L1MD2 LINE L1 -14 6345 6210 2613 69 0 0 chr11 36706179 36706485 -112076987 + AluY SINE Alu 1 306 -5 942 280 25 0 chr11 36706603 36706846 -112076626 + MIR SINE MIR 14 262 0 32 26 0 0 chr11 36706846 36706885 -112076587 + AT_rich Low_complexity Low_complexity 1 39 0 3017 6 0 0 chr11 36707624 36707942 -112075530 + AluYb8 SINE Alu 1 318 0 446 283 91 32 chr11 36707950 36708169 -112075303 - MIR SINE MIR -28 234 3 180 0 0 0 chr11 36708314 36708334 -112075138 + (CA)n Simple_repeat Simple_repeat 2 21 0 2132 130 0 0 chr11 36710670 36710955 -112072517 - AluSx SINE Alu -27 285 1 2039 111 55 0 chr11 36711255 36711544 -112071928 + AluSx SINE Alu 1 305 -7 2321 110 7 0 chr11 36711548 36711856 -112071616 - AluSq SINE Alu -3 310 1 27 62 0 0 chr11 36711924 36711972 -112071500 + AT_rich Low_complexity Low_complexity 1 48 0 562 253 7 7 chr11 36712064 36712210 -112071262 + MER103 DNA DNA 20 165 -1 787 167 8 8 chr11 36713020 36713152 -112070320 - AluJo SINE Alu -178 134 3 494 233 120 13 chr11 36713164 36713314 -112070158 - MIR SINE MIR -74 188 23 2051 126 61 3 chr11 36713531 36713824 -112069648 - AluSx SINE Alu -2 310 1 582 244 62 12 chr11 36713824 36713984 -112069488 - MIR SINE MIR -47 215 48 622 232 70 81 chr11 36714389 36714648 -112068824 - MIR SINE MIR 0 262 7 1082 176 22 37 chr11 36715728 36716038 -112067434 - MLT1A1 LTR MaLR 0 365 5 492 316 26 26 chr11 36716043 36716233 -112067239 + L1ME4a LINE L1 5777 5966 -155 2306 117 0 16 chr11 36716268 36716585 -112066887 - AluSx SINE Alu 0 312 1 2421 65 0 32 chr11 36716663 36716971 -112066501 - AluY SINE Alu -13 298 1 2264 125 0 0 chr11 36716974 36717269 -112066203 - AluSx SINE Alu -17 295 1 577 200 173 13 chr11 36717753 36717903 -112065569 - MER5A DNA MER1_type -7 182 9 32 26 0 0 chr11 36718464 36718503 -112064969 + AT_rich Low_complexity Low_complexity 1 39 0 1011 178 0 61 chr11 36719800 36720014 -112063458 + AluJo SINE Alu 20 220 -92 2364 102 0 0 chr11 36720042 36720346 -112063126 - AluSx SINE Alu -8 304 1 984 205 30 76 chr11 36720571 36720815 -112062657 + L1ME1 LINE L1 5862 6091 -75 932 115 0 43 chr11 36720815 36720954 -112062518 + FLAM_C SINE Alu 1 133 0 984 205 30 76 chr11 36720954 36721011 -112062461 + L1ME1 LINE L1 6091 6149 -17 1412 168 134 0 chr11 36721043 36721305 -112062167 + AluSx SINE Alu 1 297 -15 185 330 68 10 chr11 36721500 36721603 -112061869 + L2 LINE L2 3034 3142 -171 22 0 0 0 chr11 36721875 36721897 -112061575 + AT_rich Low_complexity Low_complexity 1 22 0 672 258 101 15 chr11 36723139 36723337 -112060135 - MIR SINE MIR -22 240 26 888 153 0 14 chr11 36724313 36724457 -112059015 + FLAM_C SINE Alu 2 143 0 2266 95 0 0 chr11 36725245 36725549 -112057923 - AluSq SINE Alu -9 304 1 32 0 0 0 chr11 36725556 36725588 -112057884 + AT_rich Low_complexity Low_complexity 1 32 0 1105 279 181 29 chr11 36726269 36727380 -112056092 - L2 LINE L2 -1 3312 1959 1582 106 0 5 chr11 36727480 36727697 -112055775 - AluSg/x SINE Alu -14 296 81 478 168 20 10 chr11 36727697 36727798 -112055674 + L1MC4 LINE L1 7939 8040 -2 1360 178 68 14 chr11 36727819 36728100 -112055372 + AluJb SINE Alu 5 300 -2 991 297 137 41 chr11 36728102 36728347 -112055125 - L2 LINE L2 -1366 1948 1728 1574 159 9 60 chr11 36728347 36728472 -112055000 + AluJo SINE Alu 2 132 -180 2053 92 14 14 chr11 36728472 36728767 -112054705 - AluSg SINE Alu -15 295 1 1574 159 9 60 chr11 36728767 36728956 -112054516 + AluJo SINE Alu 132 300 -12 991 297 137 41 chr11 36728956 36729373 -112054099 - L2 LINE L2 -1586 1728 1222 1669 182 16 13 chr11 36729376 36729689 -112053783 - MLT1A1 LTR MaLR 0 365 52 914 200 0 0 chr11 36729737 36729907 -112053565 + FRAM SINE Alu 1 168 -8 1599 284 181 18 chr11 36729907 36730670 -112052802 - L2 LINE L2 -2100 1214 328 262 276 69 11 chr11 36730882 36730969 -112052503 + L2 LINE L2 3216 3307 -6 1173 179 40 134 chr11 36731223 36731263 -112052209 + MLT1A1 LTR MaLR 1 43 -322 2017 95 91 0 chr11 36731263 36731548 -112051924 + AluSp SINE Alu 1 311 -2 1173 179 40 134 chr11 36731548 36731910 -112051562 + MLT1A1 LTR MaLR 43 365 0 248 235 86 37 chr11 36731910 36731991 -112051481 - MIR SINE MIR -90 118 34 36 62 0 0 chr11 36732166 36732230 -112051242 + AT_rich Low_complexity Low_complexity 1 64 0 1854 144 3 0 chr11 36732230 36732515 -112050957 - AluSx SINE Alu -26 286 1 727 260 34 15 chr11 36733573 36733777 -112049695 + MIR SINE MIR 35 242 -20 1617 172 3 14 chr11 36735455 36735752 -112047720 + AluJb SINE Alu 1 294 -18 656 247 133 46 chr11 36735753 36736077 -112047395 - L1ME4a LINE L1 -11 6110 5759 2258 105 0 0 chr11 36737390 36737696 -112045776 - AluSx SINE Alu -6 306 1 1189 188 5 5 chr11 36737709 36737917 -112045555 + Tigger7 DNA MER2_type 29 236 -497 490 206 43 0 chr11 36737916 36738008 -112045464 + Tigger7 DNA MER2_type 2386 2481 -10 * 767 176 0 8 chr11 36738032 36738163 -112045309 - FLAM_C SINE Alu -2 131 2 405 241 107 0 chr11 36738181 36738293 -112045179 - MIR SINE MIR -28 234 111 645 179 9 0 chr11 36738293 36738399 -112045073 + AluJb SINE Alu 2 108 -204 189 147 0 0 chr11 36738435 36738469 -112045003 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 366 271 75 0 chr11 36738469 36738576 -112044896 - MIR SINE MIR -134 128 14 527 212 257 12 chr11 36739452 36739693 -112043779 - L1MC4 LINE L1 -2 8040 7741 2251 101 3 0 chr11 36739990 36740298 -112043174 - AluSx SINE Alu -1 311 3 1066 144 0 17 chr11 36740330 36740510 -112042962 + FRAM SINE Alu 1 176 0 264 59 0 0 chr11 36740736 36740770 -112042702 + (A)n Simple_repeat Simple_repeat 1 34 0 2359 65 3 0 chr11 36741455 36741749 -112041723 - AluSg SINE Alu -15 295 1 756 231 23 17 chr11 36741810 36741983 -112041489 + MIR SINE MIR 89 262 0 2176 109 10 3 chr11 36742341 36742652 -112040820 + AluSq SINE Alu 1 313 0 1694 247 141 10 chr11 36742814 36743316 -112040156 + MER69 DNA AcHobo 1 568 -1958 1445 167 204 18 chr11 36743314 36743750 -112039722 + MER69 DNA AcHobo 2010 2526 0 * 200 211 0 0 chr11 36743941 36743979 -112039493 + L2 LINE L2 2214 2251 -1063 2301 96 0 0 chr11 36745612 36745924 -112037548 + AluSx SINE Alu 1 312 0 851 201 0 0 chr11 36746461 36746620 -112036852 - AluJb SINE Alu -19 293 135 422 244 89 32 chr11 36746621 36746744 -112036728 - MIR SINE MIR -114 148 19 332 237 160 38 chr11 36747449 36747580 -112035892 + MIR SINE MIR 116 262 0 432 232 32 48 chr11 36748087 36748212 -112035260 + L2 LINE L2 3190 3312 -1 262 335 45 17 chr11 36748247 36748423 -112035049 - MIR SINE MIR -18 244 64 964 195 17 0 chr11 36748469 36748643 -112034829 - MER45A DNA AcHobo -1 177 1 195 359 113 9 chr11 36749637 36749743 -112033729 - L3 LINE CR1 -16 1561 1445 1491 197 42 3 chr11 36751244 36751533 -112031939 + AluJb SINE Alu 1 300 -12 1390 173 26 79 chr11 36751555 36751728 -112031744 - L1PA16 LINE L1 -20 6146 5998 1811 142 0 24 chr11 36751728 36752023 -112031449 - AluSx SINE Alu -24 288 1 1390 173 26 79 chr11 36752023 36752191 -112031281 - L1PA16 LINE L1 -168 5998 5823 313 338 15 29 chr11 36752208 36752344 -112031128 - MIR3 SINE MIR -31 177 44 316 214 104 59 chr11 36753278 36753404 -112030068 + MIR SINE MIR 13 145 -63 212 0 0 35 chr11 36753414 36753443 -112030029 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 1961 119 4 0 chr11 36753443 36753721 -112029751 - AluSx SINE Alu -33 279 1 591 88 12 0 chr11 36753721 36753801 -112029671 - AluS SINE Alu -230 82 2 202 313 0 38 chr11 36753826 36753906 -112029566 + MIR SINE MIR 186 262 0 2365 81 3 0 chr11 36754654 36754961 -112028511 + AluSp SINE Alu 1 308 -5 1117 273 126 23 chr11 36755253 36755776 -112027696 - MLT1L LTR MaLR 0 615 39 312 324 110 14 chr11 36755956 36756075 -112027397 + L1MC5 LINE L1 7526 7663 -298 1688 145 14 0 chr11 36756075 36756381 -112027091 + AluSx SINE Alu 26 312 0 312 324 110 14 chr11 36756381 36756406 -112027066 + L1MC5 LINE L1 7663 7684 -277 945 167 5 42 chr11 36756452 36756644 -112026828 - AluJb SINE Alu -39 273 89 2197 89 10 0 chr11 36756668 36756960 -112026512 - AluSx SINE Alu -17 295 1 453 221 83 39 chr11 36756967 36757171 -112026301 + L1MC5 LINE L1 7705 7917 -44 432 295 199 25 chr11 36757202 36757568 -112025904 + L2 LINE L2 2883 3312 -1 2103 118 13 0 chr11 36757660 36757964 -112025508 - AluSq SINE Alu -5 308 1 277 190 35 17 chr11 36757965 36758023 -112025449 - MIR SINE MIR -55 207 149 198 340 96 13 chr11 36758569 36758725 -112024747 + MIR3 SINE MIR 17 185 -23 621 165 0 10 chr11 36758755 36758852 -112024620 - AluJb SINE Alu -214 98 3 737 246 100 15 chr11 36759128 36759340 -112024132 + MIR SINE MIR 30 262 0 182 231 0 58 chr11 36759401 36759422 -112024050 + L2 LINE L2 3265 3286 -27 1897 142 7 0 chr11 36759422 36759778 -112023694 + AluSx SINE Alu 1 312 0 182 231 0 58 chr11 36759778 36759808 -112023664 + L2 LINE L2 3286 3313 0 931 243 45 59 chr11 36759906 36760094 -112023378 + L1MDa LINE L1 2238 2427 -4294 1829 157 0 23 chr11 36760094 36760399 -112023073 + AluSx SINE Alu 1 298 -14 931 243 45 59 chr11 36760399 36760541 -112022931 + L1MDa LINE L1 2427 2569 -4152 1975 123 7 23 chr11 36760541 36760849 -112022623 + AluSx SINE Alu 1 303 -9 931 243 45 59 chr11 36760849 36761070 -112022402 + L1MDa LINE L1 2569 2833 -3888 652 301 31 27 chr11 36762084 36762340 -112021132 + MIR SINE MIR 6 262 0 508 287 87 68 chr11 36763268 36763589 -112019883 + MLT1K LTR MaLR 193 519 -69 234 293 131 0 chr11 36763843 36763942 -112019530 + MIR SINE MIR 20 131 -77 641 300 19 20 chr11 36764008 36764242 -112019230 + MIR SINE MIR 30 261 -1 319 328 152 37 chr11 36765724 36765968 -112017504 + L2 LINE L2 2988 3259 -13 341 324 81 14 chr11 36766769 36766917 -112016555 - MIR SINE MIR -13 249 92 636 251 36 26 chr11 36766923 36767118 -112016354 + L1ME3 LINE L1 5927 6123 -39 200 83 0 28 chr11 36767160 36767196 -112016276 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2011 128 6 13 chr11 36767227 36767540 -112015932 + AluSx SINE Alu 1 311 -1 314 292 117 32 chr11 36769987 36770141 -112013331 - MIR SINE MIR -36 226 60 1521 194 0 7 chr11 36770143 36770426 -112013046 + AluJo SINE Alu 32 312 0 751 267 100 17 chr11 36770588 36770828 -112012644 - MIR SINE MIR -1 261 2 746 291 8 30 chr11 36771284 36771518 -112011954 + MIR SINE MIR 21 249 -13 2091 135 0 0 chr11 36771852 36772156 -112011316 + AluSx SINE Alu 1 304 -8 1800 134 16 36 chr11 36772168 36772473 -112010999 + AluSx SINE Alu 1 299 -13 212 339 16 0 chr11 36772473 36772535 -112010937 - MER5A DNA MER1_type -56 133 71 196 315 54 22 chr11 36772772 36772864 -112010608 - MIR SINE MIR -5 257 163 610 208 8 0 chr11 36772864 36772989 -112010483 - FLAM_C SINE Alu -15 128 3 216 0 0 0 chr11 36773797 36773821 -112009651 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 222 208 0 38 chr11 36773824 36773877 -112009595 + GA-rich Low_complexity Low_complexity 3 53 0 571 304 22 16 chr11 36774080 36774264 -112009208 - MIR SINE MIR -27 235 51 528 279 58 32 chr11 36774853 36775043 -112008429 - MIR SINE MIR -5 257 63 1021 176 31 10 chr11 36775242 36775435 -112008037 + MER3 DNA MER1_type 13 209 0 316 264 196 0 chr11 36776260 36776408 -112007064 + MIR SINE MIR 60 236 -26 477 256 108 8 chr11 36776472 36776630 -112006842 + MIR SINE MIR 10 167 -63 1129 118 0 0 chr11 36776671 36776891 -112006581 - AluSg/x SINE Alu 0 352 133 386 267 17 42 chr11 36777144 36777200 -112006272 + MER5B DNA MER1_type 62 118 -60 186 118 0 0 chr11 36777200 36777234 -112006238 + (CA)n Simple_repeat Simple_repeat 2 35 0 2069 126 3 0 chr11 36777234 36777527 -112005945 - AluSx SINE Alu -18 294 1 386 267 17 42 chr11 36777527 36777589 -112005883 + MER5B DNA MER1_type 116 178 0 246 147 29 15 chr11 36777591 36777659 -112005813 - MIR SINE MIR -84 178 110 1841 164 0 17 chr11 36778253 36778551 -112004921 - AluJb SINE Alu -19 293 1 463 199 50 50 chr11 36778620 36778761 -112004711 + L2 LINE L2 2379 2519 -795 697 219 158 45 chr11 36778761 36779071 -112004401 + L2 LINE L2 2632 2976 -338 372 198 49 12 chr11 36779150 36779231 -112004241 + L2 LINE L2 3229 3312 -1 344 304 29 0 chr11 36780417 36780519 -112002953 - MIR3 SINE MIR -19 189 85 2203 138 0 0 chr11 36780907 36781219 -112002253 + AluSx SINE Alu 1 312 0 229 206 88 0 chr11 36782198 36782266 -112001206 + L2 LINE L2 2890 2963 -309 319 293 20 0 chr11 36783333 36783432 -112000040 - MIR SINE MIR -30 232 132 461 206 12 2 chr11 36783435 36783594 -111999878 + MER20 DNA MER1_type 3 202 -17 278 248 77 34 chr11 36783605 36783722 -111999750 - MIR SINE MIR -132 130 9 262 310 116 8 chr11 36783789 36783918 -111999554 - MIR SINE MIR -118 144 2 456 287 118 31 chr11 36786089 36786343 -111997129 + L2 LINE L2 3034 3309 -4 570 241 86 6 chr11 36786348 36786522 -111996950 - MIR SINE MIR -13 249 62 1967 151 3 22 chr11 36786527 36786845 -111996627 + AluJo SINE Alu 1 312 0 212 245 0 19 chr11 36787104 36787157 -111996315 + GA-rich Low_complexity Low_complexity 1 52 0 848 121 0 71 chr11 36788088 36788228 -111995244 + FLAM_C SINE Alu 1 130 -13 206 143 0 24 chr11 36788228 36788270 -111995202 + (TGGGGG)n Simple_repeat Simple_repeat 5 45 0 676 230 64 39 chr11 36789104 36789308 -111994164 + MIR SINE MIR 33 241 -21 196 122 61 0 chr11 36791970 36792019 -111991453 + G-rich Low_complexity Low_complexity 3 54 0 959 211 53 51 chr11 36793680 36794035 -111989437 + L1MC5 LINE L1 7378 7733 -228 396 0 0 0 chr11 36794279 36794323 -111989149 + (TA)n Simple_repeat Simple_repeat 2 45 0 564 211 19 32 chr11 36795099 36795255 -111988217 + L2 LINE L2 3160 3313 0 2013 144 7 0 chr11 36795447 36795732 -111987740 - AluSx SINE Alu -25 287 1 925 174 28 47 chr11 36795880 36796030 -111987442 + MER3 DNA MER1_type 1 147 -62 1554 161 8 4 chr11 36796030 36796273 -111987199 - AluJb SINE Alu -25 287 44 925 174 28 47 chr11 36796273 36796335 -111987137 + MER3 DNA MER1_type 147 209 0 2506 87 3 0 chr11 36796797 36797108 -111986364 - AluSp SINE Alu -1 312 1 267 103 0 0 chr11 36798366 36798405 -111985067 + (A)n Simple_repeat Simple_repeat 1 39 0 189 136 0 91 chr11 36798580 36798624 -111984848 + L3b LINE CR1 1188 1227 -356 1747 61 0 0 chr11 36798852 36799065 -111984407 + AluY SINE Alu 91 303 -8 554 92 13 0 chr11 36799069 36799145 -111984327 - MADE1 DNA Mariner -3 77 1 369 0 0 0 chr11 36799282 36799323 -111984149 + (TG)n Simple_repeat Simple_repeat 2 42 0 1826 125 3 56 chr11 36799323 36799617 -111983855 - AluSx SINE Alu -32 280 1 200 331 34 68 chr11 36799850 36799960 -111983512 - MER5B DNA MER1_type -32 146 41 1755 166 10 14 chr11 36799960 36800256 -111983216 + AluJo SINE Alu 1 295 -17 200 331 34 68 chr11 36800256 36800293 -111983179 - MER5B DNA MER1_type -137 41 4 234 0 0 0 chr11 36800550 36800576 -111982896 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2514 93 0 0 chr11 36800800 36801111 -111982361 + AluSx SINE Alu 1 311 -1 3859 89 9 2 chr11 36801114 36801641 -111981831 - L1PB1 LINE L1 -5 6146 5616 8456 176 18 6 chr11 36801641 36803638 -111979834 + L1PB1 LINE L1 3581 5605 -546 2210 82 3 31 chr11 36803758 36804074 -111979398 - AluSp SINE Alu 0 308 1 2012 140 7 0 chr11 36804185 36804485 -111978987 - AluSx SINE Alu -10 302 1 305 301 121 23 chr11 36804590 36804763 -111978709 + L2 LINE L2 3124 3313 0 2217 130 0 0 chr11 36805619 36805919 -111977553 - AluSx SINE Alu -12 300 1 2360 77 0 22 chr11 36806172 36806485 -111976987 - AluY SINE Alu -5 306 1 2509 80 3 0 chr11 36806508 36806819 -111976653 + AluSp SINE Alu 1 312 -1 2090 124 3 16 chr11 36807103 36807417 -111976055 + AluSx SINE Alu 1 310 -2 584 177 26 0 chr11 36807514 36807627 -111975845 - L1MC3 LINE L1 0 7785 7670 298 47 47 47 chr11 36807656 36807742 -111975730 + (TTTTTA)n Simple_repeat Simple_repeat 3 88 0 3101 33 3 3 chr11 36807745 36808113 -111975359 - L1PA7 LINE L1 -4 6150 5783 4720 228 54 56 chr11 36808138 36809314 -111974158 - L1 LINE L1 -2576 4989 3812 317 24 24 0 chr11 36809314 36809356 -111974116 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4720 228 54 56 chr11 36809356 36809894 -111973578 - L1 LINE L1 -3753 3812 3182 1886 180 0 0 chr11 36809894 36810189 -111973283 - AluSx SINE Alu -17 295 1 4720 228 54 56 chr11 36810189 36810303 -111973169 - L1 LINE L1 -4383 3182 3069 1625 61 37 9 chr11 36810305 36810519 -111972953 + Tigger1 DNA MER2_type 1042 1261 -1157 1295 236 4 0 chr11 36810524 36810800 -111972672 - L1M2 LINE L1 -4177 2991 2715 1283 132 11 0 chr11 36810807 36810996 -111972476 - AluSx SINE Alu -113 199 9 7096 130 11 37 chr11 36810996 36811290 -111972182 + Tigger1 DNA MER2_type 302 602 -1816 2217 117 7 0 chr11 36811290 36811588 -111971884 - AluSx SINE Alu -7 305 6 7096 130 11 37 chr11 36811588 36812398 -111971074 + Tigger1 DNA MER2_type 602 1377 -1041 2173 124 3 0 chr11 36812398 36812697 -111970775 - AluSp SINE Alu -13 300 1 7096 130 11 37 chr11 36812697 36812756 -111970716 + Tigger1 DNA MER2_type 1377 1436 -982 1361 136 14 9 chr11 36812754 36812974 -111970498 + Tigger1 DNA MER2_type 2194 2414 -4 * 453 228 22 0 chr11 36812975 36813067 -111970405 - L1M2 LINE L1 -5187 1981 1888 329 320 58 82 chr11 36813070 36813485 -111969987 - L1M2 LINE L1 -6760 408 4 461 277 163 26 chr11 36813634 36813882 -111969590 + L1ME4a LINE L1 5634 5847 -274 1839 127 94 0 chr11 36813882 36814158 -111969314 - AluSx SINE Alu -10 302 1 461 277 163 26 chr11 36814158 36814338 -111969134 + L1ME4a LINE L1 5847 6121 0 706 319 125 16 chr11 36814958 36815120 -111968352 + L1ME4a LINE L1 5562 5705 -416 233 29 29 0 chr11 36815120 36815154 -111968318 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 706 319 125 16 chr11 36815154 36815496 -111967976 + L1ME4a LINE L1 5705 6121 0 589 203 167 36 chr11 36815578 36815800 -111967672 - MIR SINE MIR -6 256 6 262 125 25 0 chr11 36816417 36816457 -111967015 + LTR67 LTR ERVL 99 139 -418 * 279 121 155 0 chr11 36816432 36816490 -111966982 + MLT1J LTR MaLR 110 176 -335 2436 62 3 0 chr11 36817114 36817406 -111966066 + AluY SINE Alu 3 295 -16 405 150 30 10 chr11 36817590 36817690 -111965782 + CT-rich Low_complexity Low_complexity 3 104 0 861 277 114 40 chr11 36817770 36818217 -111965255 + LTR33 LTR ERVL 1 480 -41 229 241 0 19 chr11 36818259 36818313 -111965159 + LTR33 LTR ERVL 469 521 0 774 221 14 60 chr11 36818322 36818396 -111965076 - MER3 DNA MER1_type 0 209 133 2437 85 0 0 chr11 36818396 36818690 -111964782 - AluSx SINE Alu -18 294 1 774 221 14 60 chr11 36818690 36818832 -111964640 - MER3 DNA MER1_type -76 133 3 933 243 97 58 chr11 36819020 36819051 -111964421 - L1ME3A LINE L1 -233 5937 5907 445 230 70 122 chr11 36819051 36819410 -111964062 - L1MB4 LINE L1 -284 5896 5520 2456 50 3 26 chr11 36819410 36819713 -111963759 - AluY SINE Alu -15 296 1 445 230 70 122 chr11 36819713 36819806 -111963666 - L1MB4 LINE L1 -660 5520 5483 3694 53 0 24 chr11 36819806 36820273 -111963199 - L1PA5 LINE L1 -4 6150 5695 445 230 70 122 chr11 36820273 36820397 -111963075 - L1MB4 LINE L1 -697 5483 5354 * 733 269 35 29 chr11 36820377 36820723 -111962749 - L1MB4 LINE L1 -1187 4959 4612 55 43 0 11 chr11 36820812 36820889 -111962583 + AT_rich Low_complexity Low_complexity 1 78 -15 2092 109 3 55 chr11 36820889 36821201 -111962271 - AluSx SINE Alu -16 296 1 55 43 0 11 chr11 36821201 36821217 -111962255 + AT_rich Low_complexity Low_complexity 78 93 0 969 258 49 50 chr11 36821257 36821811 -111961661 - L1MB4 LINE L1 -1721 4425 3873 628 332 71 46 chr11 36821990 36822382 -111961090 - MLT1K LTR MaLR -138 450 49 381 235 10 0 chr11 36822522 36822620 -111960852 - MIR SINE MIR -26 236 138 15568 175 32 14 chr11 36822767 36829365 -111954107 - L1PB1 LINE L1 -1 6866 6 1945 150 3 0 chr11 36829429 36829723 -111953749 + AluSx SINE Alu 1 295 -17 2116 131 3 3 chr11 36830291 36830603 -111952869 - AluSx SINE Alu 0 312 1 191 212 0 0 chr11 36830657 36830690 -111952782 - MIR SINE MIR -94 114 82 333 296 105 40 chr11 36830986 36831233 -111952239 + MLT1K LTR MaLR 326 588 0 21 0 0 0 chr11 36831394 36831415 -111952057 + AT_rich Low_complexity Low_complexity 1 21 0 210 213 50 12 chr11 36831536 36831616 -111951856 + (TA)n Simple_repeat Simple_repeat 2 84 0 261 273 101 30 chr11 36831617 36831716 -111951756 - MIR SINE MIR -3 259 154 378 271 25 17 chr11 36832115 36832128 -111951344 - MIR SINE MIR -123 139 128 1574 167 3 65 chr11 36832128 36832451 -111951021 + AluJo SINE Alu 1 303 -9 378 271 25 17 chr11 36832451 36832555 -111950917 - MIR SINE MIR -134 128 21 2180 78 4 4 chr11 36832639 36832950 -111950522 + AluY SINE Alu 1 311 0 1080 300 68 62 chr11 36833550 36834017 -111949455 - MER115 DNA AcHobo 0 693 224 * 3205 123 8 29 chr11 36834015 36834475 -111948997 + Tigger1 DNA MER2_type 1131 1580 -838 2118 139 0 0 chr11 36834475 36834777 -111948695 + AluSx SINE Alu 1 302 -10 3205 123 8 29 chr11 36834777 36834826 -111948646 + Tigger1 DNA MER2_type 1580 1629 -789 2109 105 25 0 chr11 36834901 36835214 -111948258 - AluSx SINE Alu 0 320 1 2435 32 4 4 chr11 36835370 36835686 -111947786 + AluY SINE Alu 1 316 0 1973 125 21 4 chr11 36836300 36836605 -111946867 + AluSx SINE Alu 1 310 0 449 145 60 12 chr11 36836686 36836769 -111946703 + MER3 DNA MER1_type 1 87 -122 1716 180 7 3 chr11 36836985 36837274 -111946198 - AluJo SINE Alu -18 294 5 24 67 0 0 chr11 36837708 36837753 -111945719 + AT_rich Low_complexity Low_complexity 1 45 0 249 327 79 10 chr11 36838790 36838891 -111944581 + MIR SINE MIR 81 188 -74 257 334 67 13 chr11 36838935 36839099 -111944373 + MIR SINE MIR 8 174 -63 474 311 3 22 chr11 36839150 36839468 -111944004 + CT-rich Low_complexity Low_complexity 1 311 0 482 298 8 27 chr11 36839481 36839772 -111943700 + CT-rich Low_complexity Low_complexity 1 285 0 299 298 165 13 chr11 36840482 36840640 -111942832 + MIR3 SINE MIR 3 184 -24 237 327 148 0 chr11 36840698 36840799 -111942673 + L2 LINE L2 3190 3305 -8 2627 118 74 7 chr11 36841919 36842350 -111941122 + L1MA8 LINE L1 5831 6290 -1 344 243 0 0 chr11 36842352 36842422 -111941050 - LTR33 LTR ERVL -447 74 5 1378 176 70 37 chr11 36843031 36843337 -111940135 + AluJb SINE Alu 1 315 0 201 108 0 0 chr11 36843755 36843792 -111939680 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 2215 111 3 0 chr11 36844074 36844371 -111939101 - AluSx SINE Alu -14 298 1 218 89 44 0 chr11 36844384 36844429 -111939043 + (TTTAA)n Simple_repeat Simple_repeat 4 50 0 4388 187 51 31 chr11 36844516 36845362 -111938110 + MER21B LTR ERV1 1 863 0 1628 135 30 61 chr11 36846183 36846479 -111936993 + AluJb SINE Alu 12 298 -14 289 325 38 14 chr11 36847154 36847366 -111936106 - HAL1 LINE L1 -868 1639 1423 403 259 166 34 chr11 36847452 36847657 -111935815 - L1MEd LINE L1 -4892 1227 996 2234 112 3 0 chr11 36848051 36848346 -111935126 - AluSg SINE Alu -14 296 1 743 273 40 114 chr11 36849830 36850146 -111933326 - MLT1K LTR MaLR 0 588 315 2358 102 0 13 chr11 36850146 36850461 -111933011 - AluSx SINE Alu -1 311 1 743 273 40 114 chr11 36850461 36850599 -111932873 - MLT1K LTR MaLR -273 315 168 225 213 288 12 chr11 36851649 36851729 -111931743 + MIR SINE MIR 94 195 -67 600 302 13 2 chr11 36852283 36852503 -111930969 + L1MC4a LINE L1 5623 5819 -302 2373 92 0 3 chr11 36852510 36852815 -111930657 + AluSc SINE Alu 1 304 -5 294 164 0 0 chr11 36852815 36852870 -111930602 + GA-rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr11 36853924 36853947 -111929525 + AT_rich Low_complexity Low_complexity 1 23 0 490 76 0 0 chr11 36853947 36854013 -111929459 - L1PA16 LINE L1 -9 6157 6092 26 64 0 0 chr11 36855510 36855557 -111927915 + AT_rich Low_complexity Low_complexity 1 47 0 2245 114 0 0 chr11 36855661 36855959 -111927513 - AluSx SINE Alu -14 298 1 427 227 58 122 chr11 36856493 36856836 -111926636 + L1ME4a LINE L1 5789 6109 -12 771 152 9 0 chr11 36857412 36857524 -111925948 - MER81 DNA DNA 0 114 2 2079 127 3 0 chr11 36857749 36858040 -111925432 + AluSx SINE Alu 18 309 -3 6172 127 27 12 chr11 36858353 36859497 -111923975 + L1PB3 LINE L1 4998 6302 -1 2055 143 0 7 chr11 36859997 36860304 -111923168 - AluJo SINE Alu -7 305 1 288 0 0 0 chr11 36861359 36861391 -111922081 + (T)n Simple_repeat Simple_repeat 1 32 0 1535 174 3 24 chr11 36861955 36862243 -111921229 - AluJo SINE Alu -20 292 11 2149 123 0 7 chr11 36862253 36862554 -111920918 - AluSx SINE Alu -13 299 1 2421 184 54 68 chr11 36862842 36863489 -111919983 - L1MC4 LINE L1 0 8042 7405 2314 99 3 0 chr11 36863504 36863798 -111919674 - AluSp SINE Alu -17 296 2 185 135 0 27 chr11 36863891 36863928 -111919544 + L3 LINE CR1 428 463 -1114 567 271 89 61 chr11 36864020 36864300 -111919172 - L2 LINE L2 -1 3312 3025 1884 113 50 3 chr11 36864714 36864996 -111918476 + AluSx SINE Alu 1 295 -17 842 285 16 16 chr11 36866120 36866376 -111917096 + MIR SINE MIR 2 257 -5 1237 253 47 24 chr11 36866708 36867132 -111916340 + MLT1J LTR MaLR 1 477 -34 545 270 13 33 chr11 36867180 36867332 -111916140 - MIR SINE MIR -108 154 6 185 337 70 47 chr11 36868160 36868246 -111915226 + L2 LINE L2 3179 3266 -6 608 290 119 22 chr11 36868381 36868743 -111914729 + L1ME4a LINE L1 5520 5916 -205 2538 57 0 3 chr11 36868910 36869211 -111914261 + AluY SINE Alu 1 300 -11 2197 128 0 0 chr11 36869250 36869562 -111913910 - AluSx SINE Alu 0 312 1 25 51 0 0 chr11 36870344 36870383 -111913089 + AT_rich Low_complexity Low_complexity 1 39 0 2208 112 0 13 chr11 36870572 36870877 -111912595 - AluSx SINE Alu -11 301 1 1125 216 18 0 chr11 36871180 36871398 -111912074 + MIR SINE MIR 28 249 -13 249 254 118 64 chr11 36873246 36873356 -111910116 + L2 LINE L2 3156 3271 -1 345 331 131 44 chr11 36873439 36873759 -111909713 - L2 LINE L2 0 3272 2925 205 381 62 0 chr11 36874101 36874198 -111909274 - MIR3 SINE MIR -93 115 13 2292 102 0 0 chr11 36874305 36874600 -111908872 - AluSx SINE Alu -1 311 17 254 313 30 22 chr11 36874984 36875118 -111908354 - L1MC4 LINE L1 -9 8033 7899 2570 178 54 18 chr11 36875119 36875266 -111908206 - L1ME2 LINE L1 -308 5856 5716 1735 186 3 7 chr11 36875266 36875567 -111907905 + AluJb SINE Alu 1 300 -12 2570 178 54 18 chr11 36875567 36875975 -111907497 - L1ME2 LINE L1 -448 5716 5281 770 234 106 56 chr11 36876013 36876074 -111907398 - MLT1J1 LTR MaLR -18 428 372 2322 100 7 0 chr11 36876074 36876374 -111907098 + AluSp SINE Alu 1 302 -11 770 234 106 56 chr11 36876374 36876632 -111906840 - MLT1J1 LTR MaLR -74 372 93 303 197 74 0 chr11 36877635 36877704 -111905768 - L1ME LINE L1 -483 5679 5606 2529 133 106 0 chr11 36877766 36878173 -111905299 - LTR47A LTR ERVL -2 450 1 21 0 0 0 chr11 36878712 36878733 -111904739 + AT_rich Low_complexity Low_complexity 1 21 0 2338 107 0 19 chr11 36878961 36879279 -111904193 + AluSx SINE Alu 1 312 0 212 237 97 21 chr11 36879639 36879732 -111903740 + MIR SINE MIR 97 196 -66 2191 91 3 10 chr11 36880501 36880797 -111902675 - AluSp SINE Alu -19 294 1 596 163 131 44 chr11 36880936 36881096 -111902376 + MER5B DNA MER1_type 2 175 -3 531 238 93 29 chr11 36881516 36881707 -111901765 - MIR SINE MIR -52 210 5 21 0 0 0 chr11 36882281 36882302 -111901170 + AT_rich Low_complexity Low_complexity 1 21 0 3665 149 65 2 chr11 36883369 36883938 -111899534 - MER6A DNA MER2_type 0 605 1 191 284 45 15 chr11 36885164 36885231 -111898241 - MIR SINE MIR -4 258 190 1892 138 4 4 chr11 36886351 36886627 -111896845 + AluJb SINE Alu 27 302 -10 180 0 0 0 chr11 36887129 36887149 -111896323 + (ATG)n Simple_repeat Simple_repeat 2 21 0 269 320 47 23 chr11 36888569 36888697 -111894775 + MIR SINE MIR 31 161 -101 23 0 0 0 chr11 36889278 36889301 -111894171 + AT_rich Low_complexity Low_complexity 1 23 0 2344 79 23 0 chr11 36890955 36891259 -111892213 - AluSx SINE Alu -1 311 1 207 328 101 35 chr11 36891803 36892001 -111891471 - L2 LINE L2 -158 3114 2904 1728 143 29 29 chr11 36894200 36894507 -111888965 - AluJo SINE Alu -3 309 3 391 224 56 0 chr11 36896042 36896167 -111887305 - L1ME4a LINE L1 0 6121 5990 204 40 0 0 chr11 36896170 36896195 -111887277 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1935 114 29 0 chr11 36896198 36896471 -111887001 - AluSx SINE Alu -31 281 1 288 303 74 31 chr11 36897268 36897430 -111886042 + MIR3 SINE MIR 30 198 -10 233 340 29 0 chr11 36899522 36899625 -111883847 + L1ME LINE L1 322 427 -5945 2796 19 0 13 chr11 36900249 36900563 -111882909 + AluY SINE Alu 1 310 -1 264 311 31 10 chr11 36900583 36900745 -111882727 + L1ME LINE L1 1056 1276 -5106 289 210 111 99 chr11 36900755 36901108 -111882364 + L1MEd LINE L1 685 1041 -5078 279 220 68 0 chr11 36901304 36901363 -111882109 + L2 LINE L2 3250 3312 -1 22 0 0 0 chr11 36901906 36901928 -111881544 + AT_rich Low_complexity Low_complexity 1 22 0 806 168 8 0 chr11 36902520 36902639 -111880833 + FLAM_A SINE Alu 1 120 -13 181 204 23 23 chr11 36903096 36903140 -111880332 - MIR SINE MIR -178 84 41 201 234 64 75 chr11 36903323 36903417 -111880055 - MIR SINE MIR -13 249 157 2166 122 0 0 chr11 36903425 36903719 -111879753 - AluSx SINE Alu -18 294 1 2348 240 117 13 chr11 36903724 36904432 -111879040 - MER21B LTR ERV1 -75 788 7 211 323 43 0 chr11 36904441 36904534 -111878938 - MIR SINE MIR -101 161 65 2098 133 0 13 chr11 36906241 36906556 -111876916 + AluJb SINE Alu 2 312 0 1960 100 0 0 chr11 36906756 36907006 -111876466 + AluSx SINE Alu 1 250 -62 856 95 66 7 chr11 36907011 36907148 -111876324 + L1MB3 LINE L1 6039 6183 0 212 222 150 36 chr11 36907148 36907231 -111876241 + L2 LINE L2 1920 1992 -1322 436 192 323 0 chr11 36907231 36907330 -111876142 - FLAM_A SINE Alu -2 131 1 212 222 150 36 chr11 36907330 36907413 -111876059 + L2 LINE L2 1992 2105 -1209 212 262 0 0 chr11 36907417 36907459 -111876013 + polypyrimidine Low_complexity Low_complexity 3 44 0 2976 141 33 18 chr11 36907463 36907974 -111875498 - L1MB8 LINE L1 -5 6173 5655 2162 92 7 14 chr11 36908003 36908298 -111875174 + AluSg SINE Alu 1 293 -17 4117 139 89 1 chr11 36908382 36909042 -111874430 + LTR62 LTR ERVK 1 718 -1 2056 136 0 3 chr11 36909151 36909446 -111874026 + AluSx SINE Alu 1 294 -18 2011 127 3 50 chr11 36909751 36910074 -111873398 - AluSx SINE Alu -4 308 1 1906 161 0 0 chr11 36910281 36910579 -111872893 - AluJb SINE Alu -14 298 1 727 211 83 162 chr11 36910674 36910797 -111872675 + MLT1C LTR MaLR 1 132 -335 2075 122 10 7 chr11 36910797 36911092 -111872380 + AluSq SINE Alu 3 298 -15 727 211 83 162 chr11 36911092 36911475 -111871997 + MLT1C LTR MaLR 132 467 0 574 245 40 0 chr11 36911946 36912097 -111871375 - Charlie8 DNA MER1_type -2167 250 94 613 168 19 0 chr11 36912334 36912441 -111871031 + FLAM_A SINE Alu 24 132 -10 936 117 0 8 chr11 36913326 36913454 -111870018 + FLAM_C SINE Alu 3 129 -4 216 0 0 0 chr11 36914764 36914788 -111868684 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2216 101 0 10 chr11 36914788 36915076 -111868396 - AluSx SINE Alu -25 287 1 630 298 107 5 chr11 36915461 36915676 -111867796 + MIR SINE MIR 5 241 -21 212 349 0 16 chr11 36915834 36915897 -111867575 - MIR SINE MIR -190 72 11 332 226 267 34 chr11 36916496 36916642 -111866830 - L2 LINE L2 -503 2811 2632 698 269 149 30 chr11 36916754 36917197 -111866275 + L2 LINE L2 2780 3291 -22 780 171 30 3 chr11 36917210 36917778 -111865694 + (CTATA)n Simple_repeat Simple_repeat 1 583 0 880 126 29 0 chr11 36917790 36917964 -111865508 + (CTATA)n Simple_repeat Simple_repeat 2 180 0 451 163 31 16 chr11 36917977 36918106 -111865366 + (CTATA)n Simple_repeat Simple_repeat 5 135 0 1013 89 24 0 chr11 36918123 36918291 -111865181 + (CTATA)n Simple_repeat Simple_repeat 5 176 0 321 332 137 19 chr11 36918407 36918612 -111864860 + L2 LINE L2 2715 2943 -371 532 288 31 0 chr11 36918798 36918958 -111864514 - MIR SINE MIR -6 256 92 194 286 86 29 chr11 36919043 36919148 -111864324 - MIR SINE MIR -11 251 141 198 191 0 0 chr11 36920303 36920350 -111863122 + (TG)n Simple_repeat Simple_repeat 2 48 0 547 245 176 32 chr11 36920350 36920566 -111862906 + MIR SINE MIR 4 250 -12 541 263 181 17 chr11 36921150 36921443 -111862029 + L2 LINE L2 2534 2874 -440 614 161 153 0 chr11 36921516 36921653 -111861819 + MER3 DNA MER1_type 46 203 -6 651 333 96 15 chr11 36921661 36922067 -111861405 + L2 LINE L2 2874 3312 -1 480 286 51 17 chr11 36922142 36922317 -111861155 + MIR SINE MIR 81 261 -1 205 319 33 22 chr11 36923061 36923152 -111860320 - MIR3 SINE MIR -32 176 85 429 220 17 51 chr11 36924908 36925026 -111858446 + MER94 DNA DNA 8 121 -13 2092 120 17 3 chr11 36925330 36925629 -111857843 - AluSq SINE Alu -10 303 1 262 303 30 61 chr11 36926178 36926310 -111857162 - L3 LINE CR1 -114 1463 1336 413 308 52 12 chr11 36926393 36926565 -111856907 - MIR SINE MIR -63 199 21 325 283 0 47 chr11 36926595 36926701 -111856771 + MIR3 SINE MIR 81 181 -27 449 305 128 16 chr11 36927783 36927970 -111855502 + MIR SINE MIR 2 209 -53 493 280 14 14 chr11 36928553 36928696 -111854776 + MIR SINE MIR 117 259 -3 261 294 69 39 chr11 36928681 36928783 -111854689 - L2 LINE L2 -13 3259 3155 * 269 268 98 40 chr11 36928777 36928903 -111854569 - MIR SINE MIR -69 139 1 183 318 63 0 chr11 36929232 36929295 -111854177 - MIR SINE MIR -79 183 117 22 0 0 0 chr11 36929363 36929385 -111854087 + AT_rich Low_complexity Low_complexity 1 22 0 204 359 22 11 chr11 36930527 36930619 -111852853 - MIR3 SINE MIR -52 156 64 406 275 203 43 chr11 36931330 36931606 -111851866 - MER102b DNA MER1_type -15 326 7 541 248 30 8 chr11 36931889 36932022 -111851450 + MIR SINE MIR 116 251 -11 2119 102 3 3 chr11 36932564 36932859 -111850613 + AluSx SINE Alu 1 295 -17 1642 168 7 13 chr11 36933000 36933298 -111850174 - AluJb SINE Alu -16 296 1 763 263 24 64 chr11 36933578 36933829 -111849643 + MIR SINE MIR 22 262 0 413 289 68 32 chr11 36934684 36934933 -111848539 - MIR SINE MIR -4 258 1 248 250 282 19 chr11 36935847 36936003 -111847469 - MIR SINE MIR -19 243 47 227 291 73 0 chr11 36936591 36936646 -111846826 - L3 LINE CR1 -4 1573 1515 848 160 0 19 chr11 36936761 36936917 -111846555 - L1MB3 LINE L1 -1 6182 6030 1925 132 0 3 chr11 36936922 36937211 -111846261 - AluJb SINE Alu -21 291 4 1726 144 35 11 chr11 36937221 36937506 -111845966 - AluJb SINE Alu -20 292 1 669 206 132 74 chr11 36937523 36937763 -111845709 - MIR SINE MIR -10 252 8 225 154 0 0 chr11 36938150 36938189 -111845283 + (TG)n Simple_repeat Simple_repeat 2 40 0 250 322 203 0 chr11 36938659 36938777 -111844695 - MIR SINE MIR -11 251 110 706 235 111 0 chr11 36938847 36939009 -111844463 + MIR SINE MIR 78 257 -5 278 293 100 53 chr11 36939037 36939187 -111844285 - MIR SINE MIR -34 228 72 372 196 54 0 chr11 36939693 36939785 -111843687 - MIR SINE MIR -114 148 52 2128 168 0 0 chr11 36939901 36940264 -111843208 + L1PA16 LINE L1 5804 6166 0 1879 119 3 7 chr11 36940274 36940559 -111842913 - AluSx SINE Alu -17 295 12 22 0 0 0 chr11 36940571 36940593 -111842879 + AT_rich Low_complexity Low_complexity 1 22 0 181 30 91 0 chr11 36940753 36940786 -111842686 + (CATA)n Simple_repeat Simple_repeat 1 36 0 557 241 94 20 chr11 36940804 36941007 -111842465 + MER46C DNA MER2_type 121 338 0 281 333 51 26 chr11 36941042 36941198 -111842274 - MIR SINE MIR -34 228 69 183 278 74 19 chr11 36941555 36941609 -111841863 - MIR SINE MIR -165 97 41 529 201 77 48 chr11 36941642 36941851 -111841621 + MER113 DNA MER1_type? 1 215 -306 374 211 9 140 chr11 36941892 36941976 -111841496 + MER58 DNA MER1_type 1 68 -273 2242 106 0 3 chr11 36941976 36942288 -111841184 + AluSx SINE Alu 2 312 0 374 211 9 140 chr11 36942288 36942317 -111841155 + MER58 DNA MER1_type 68 99 -242 533 118 97 0 chr11 36942329 36942422 -111841050 + MER58 DNA MER1_type 2318 2419 -1 452 270 7 51 chr11 36942505 36942642 -111840830 - MIR SINE MIR -59 149 19 2042 110 7 0 chr11 36942804 36943110 -111840362 + AluSx SINE Alu 2 309 0 696 216 65 43 chr11 36944375 36944606 -111838866 + MER106A DNA MER1_type 1 236 0 221 200 0 0 chr11 36946300 36946340 -111837132 + MIR SINE MIR 108 147 -115 345 169 28 14 chr11 36946640 36946711 -111836761 + MIR3 SINE MIR 98 169 -39 336 303 16 25 chr11 36947945 36948067 -111835405 + MIR SINE MIR 2 122 -140 214 294 0 71 chr11 36948488 36948573 -111834899 + MIR3 SINE MIR 89 167 -41 196 292 139 14 chr11 36948766 36948838 -111834634 + L3 LINE CR1 1494 1574 -3 2248 92 0 0 chr11 36949037 36949329 -111834143 + AluSg SINE Alu 1 292 -18 821 279 5 0 chr11 36949858 36950055 -111833417 + MIR SINE MIR 5 202 -60 860 226 52 26 chr11 36950066 36950296 -111833176 - MIR SINE MIR -20 242 7 428 349 78 5 chr11 36950350 36950542 -111832930 - MIR SINE MIR -11 251 46 194 365 14 0 chr11 36951232 36951306 -111832166 + MIR SINE MIR 67 141 -121 864 214 11 103 chr11 36951467 36951748 -111831724 - MIR SINE MIR -1 261 7 226 69 0 0 chr11 36953152 36953181 -111830291 - HsTC2 DNA Tc2 -1837 61 33 193 375 0 10 chr11 36953353 36953449 -111830023 - L2 LINE L2 -174 3098 3004 739 234 34 11 chr11 36953491 36953666 -111829806 - MIR SINE MIR -83 179 1 1306 10 10 29 chr11 36954030 36954235 -111829237 + (TTTC)n Simple_repeat Simple_repeat 1 201 0 1816 157 7 0 chr11 36954264 36954563 -111828909 - AluSx SINE Alu -11 301 1 642 212 142 66 chr11 36955301 36955527 -111827945 + MIR SINE MIR 20 262 0 229 279 0 15 chr11 36959020 36959088 -111824384 - MIR SINE MIR -97 165 99 2348 80 0 0 chr11 36959315 36959617 -111823855 - AluY SINE Alu -9 302 1 693 215 20 0 chr11 36959718 36959867 -111823605 - MER103 DNA DNA -2 164 13 211 333 0 14 chr11 36959939 36960011 -111823461 + L2 LINE L2 3145 3215 -57 334 220 0 33 chr11 36960176 36960267 -111823205 + L2 LINE L2 2996 3083 -230 230 333 0 28 chr11 36960358 36960466 -111823006 + L2 LINE L2 3083 3187 -126 307 315 90 0 chr11 36960678 36960767 -111822705 + MER91A DNA MER1_type 90 186 -10 348 187 101 115 chr11 36960767 36960805 -111822667 + L2 LINE L2 3175 3212 -101 344 294 48 8 chr11 36960805 36960931 -111822541 + MER94 DNA DNA 3 133 -1 348 187 101 115 chr11 36960931 36961031 -111822441 + L2 LINE L2 3212 3311 -2 1674 184 0 7 chr11 36961229 36961534 -111821938 + AluSx SINE Alu 1 303 -9 375 279 70 28 chr11 36961823 36962024 -111821448 - L2 LINE L2 -1 3271 3005 2192 105 0 3 chr11 36962162 36962466 -111821006 - AluSq SINE Alu -10 303 1 667 101 0 0 chr11 36962484 36962583 -111820889 - L1PB1 LINE L1 0 6151 6053 304 298 11 0 chr11 36962888 36962982 -111820490 + MER117 DNA MER1_type 2 96 -101 183 156 0 0 chr11 36963009 36963041 -111820431 + (TG)n Simple_repeat Simple_repeat 1 32 0 263 211 0 0 chr11 36963581 36963633 -111819839 - L2 LINE L2 0 3313 3262 1598 216 86 36 chr11 36963717 36964193 -111819279 + MLT1D LTR MaLR 6 505 0 275 344 45 6 chr11 36964301 36964458 -111819014 - L1ME LINE L1 -255 5866 5704 1731 183 5 37 chr11 36965113 36965491 -111817981 + L1MB3 LINE L1 5817 6182 -1 635 228 117 17 chr11 36965619 36965799 -111817673 - MIR SINE MIR -44 218 21 507 289 106 14 chr11 36965803 36966011 -111817461 - MIR SINE MIR -11 251 25 1562 199 0 7 chr11 36966149 36966441 -111817031 - AluJo SINE Alu -22 290 1 387 377 82 0 chr11 36966599 36966758 -111816714 + L2 LINE L2 3101 3272 0 215 282 77 96 chr11 36966881 36966948 -111816524 - L2 LINE L2 -18 3295 3228 2023 127 3 16 chr11 36966948 36967264 -111816208 + AluSx SINE Alu 1 312 0 215 282 77 96 chr11 36967264 36967405 -111816067 - L2 LINE L2 -85 3228 3091 264 233 50 117 chr11 36967454 36967533 -111815939 + MIR SINE MIR 73 143 -119 1344 198 124 58 chr11 36967533 36967967 -111815505 + MLT1C LTR MaLR 5 467 0 264 233 50 117 chr11 36967967 36968007 -111815465 + MIR SINE MIR 143 184 -78 212 277 40 30 chr11 36968059 36968160 -111815312 - L2 LINE L2 -221 3092 2991 284 318 32 61 chr11 36968379 36968659 -111814813 + MLT1K LTR MaLR 159 430 -158 369 86 0 0 chr11 36968679 36968737 -111814735 + (GA)n Simple_repeat Simple_repeat 1 58 0 924 158 61 6 chr11 36968738 36968903 -111814569 - MLT1A2 LTR MaLR -200 174 1 336 207 0 0 chr11 36969040 36969098 -111814374 + L2 LINE L2 3254 3311 -2 754 240 42 42 chr11 36969230 36969447 -111814025 - L2 LINE L2 -3 3310 3094 2282 71 7 3 chr11 36969501 36969795 -111813677 + AluY SINE Alu 1 295 -16 486 299 22 15 chr11 36969940 36970074 -111813398 + L2 LINE L2 3138 3272 0 1999 98 14 0 chr11 36970306 36970583 -111812889 - AluSc SINE Alu 0 309 29 1017 242 90 28 chr11 36970583 36971035 -111812437 + MLT1K LTR MaLR 6 523 -65 1377 22 11 6 chr11 36971035 36971213 -111812259 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1017 242 90 28 chr11 36971213 36971282 -111812190 + MLT1K LTR MaLR 523 586 -2 254 131 16 98 chr11 36972053 36972114 -111811358 + MADE1 DNA Mariner 25 80 0 369 224 40 92 chr11 36972139 36972291 -111811181 + L2 LINE L2 2928 3071 -201 575 329 66 21 chr11 36972534 36972777 -111810695 + MIR SINE MIR 9 262 0 225 250 0 0 chr11 36972904 36972956 -111810516 - L2 LINE L2 0 3313 3262 477 0 0 0 chr11 36973280 36973333 -111810139 + (CA)n Simple_repeat Simple_repeat 2 54 0 330 262 37 19 chr11 36973813 36973920 -111809552 - MER20B DNA MER1_type -673 110 2 226 325 25 50 chr11 36973982 36974102 -111809370 + L2 LINE L2 3184 3300 -13 199 325 84 0 chr11 36974938 36975021 -111808451 + MIR3 SINE MIR 93 182 -26 557 281 69 39 chr11 36975442 36975645 -111807827 + MIR SINE MIR 35 243 -19 460 229 100 116 chr11 36975999 36976309 -111807163 + L2 LINE L2 3008 3312 -1 731 169 18 54 chr11 36977244 36977410 -111806062 + MIR SINE MIR 103 262 0 2423 117 20 3 chr11 36977497 36977849 -111805623 + L1PA15 LINE L1 5803 6160 -5 1837 147 3 0 chr11 36978281 36978573 -111804899 - AluSx SINE Alu -6 306 14 887 319 23 21 chr11 36978700 36979135 -111804337 - L2 LINE L2 -822 2492 2057 2145 125 6 10 chr11 36979442 36979755 -111803717 + AluSx SINE Alu 1 312 0 192 274 81 0 chr11 36979866 36979928 -111803544 - L2 LINE L2 -36 3277 3211 860 165 40 28 chr11 36979935 36980111 -111803361 + MER5B DNA MER1_type 1 178 0 198 264 209 9 chr11 36980179 36980289 -111803183 - MIR3 SINE MIR -53 155 24 267 262 187 0 chr11 36980663 36980770 -111802702 + MIR SINE MIR 81 207 -55 394 328 25 44 chr11 36980774 36980978 -111802494 - MIR SINE MIR -20 242 43 415 292 31 37 chr11 36981213 36981374 -111802098 - MIR SINE MIR -71 191 32 569 285 10 48 chr11 36981623 36981805 -111801667 - MIR SINE MIR -21 241 66 1565 193 13 10 chr11 36981805 36982110 -111801362 - AluJb SINE Alu -6 306 1 569 285 10 48 chr11 36982110 36982134 -111801338 - MIR SINE MIR -196 66 43 391 235 109 17 chr11 36982639 36982758 -111800714 - MIR SINE MIR -122 140 11 327 320 134 43 chr11 36983445 36983817 -111799655 + LTR67 LTR ERVL 36 441 -116 9754 192 66 64 chr11 36983832 36986955 -111796517 - L1MDa LINE L1 -3383 3157 19 356 238 24 0 chr11 36986955 36987039 -111796433 + LTR67 LTR ERVL 471 556 -1 226 220 0 0 chr11 36987270 36987329 -111796143 - L1ME4a LINE L1 -3 6118 6060 1931 175 6 6 chr11 36987419 36987751 -111795721 - MER47A DNA MER2_type 0 366 35 22 0 0 0 chr11 36988109 36988131 -111795341 + AT_rich Low_complexity Low_complexity 1 22 0 351 191 21 53 chr11 36988266 36988360 -111795112 - L1MB4 LINE L1 -218 5962 5872 219 380 72 36 chr11 36988378 36988573 -111794899 + MIR3 SINE MIR 3 204 -4 308 280 13 0 chr11 36988668 36988743 -111794729 - L2 LINE L2 -43 3229 3154 270 292 58 50 chr11 36989292 36989412 -111794060 - MIR SINE MIR -122 140 20 2024 116 3 7 chr11 36989456 36989750 -111793722 - AluY SINE Alu -18 293 1 22 35 0 0 chr11 36989760 36989789 -111793683 + AT_rich Low_complexity Low_complexity 1 29 0 816 199 0 0 chr11 36989845 36989976 -111793496 - FLAM_C SINE Alu -10 133 3 569 269 70 76 chr11 36990024 36990366 -111793106 - L1MEd LINE L1 -4885 1234 895 593 194 26 65 chr11 36990545 36990700 -111792772 - MER53 DNA DNA -13 176 28 495 301 143 29 chr11 36990759 36991031 -111792441 - L1MEd LINE L1 -5406 713 411 677 68 0 0 chr11 36991138 36991226 -111792246 - Tigger3(Golem) DNA MER2_type -653 2376 2289 3765 147 41 23 chr11 36991228 36991807 -111791665 - L1MA4 LINE L1 -366 5934 5367 198 0 0 0 chr11 36991817 36991839 -111791633 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3136 88 7 7 chr11 36991839 36992239 -111791233 - L1PA10 LINE L1 -17 6151 5749 3765 147 41 23 chr11 36992239 36992905 -111790567 - L1MA4 LINE L1 -933 5367 4666 235 156 22 0 chr11 36992905 36992950 -111790522 - MIR SINE MIR -72 190 145 22 35 0 0 chr11 36994045 36994074 -111789398 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 36994155 36994176 -111789296 + AT_rich Low_complexity Low_complexity 1 21 0 240 170 224 0 chr11 36996001 36996059 -111787413 + MIR SINE MIR 88 159 -49 818 244 48 35 chr11 36996205 36996516 -111786956 - L1ME4a LINE L1 -223 5898 5584 546 331 50 0 chr11 36997156 36997316 -111786156 + MER91A DNA MER1_type 2 169 -27 225 311 91 30 chr11 36997725 36997857 -111785615 - MIR3 SINE MIR -31 177 38 2496 53 3 0 chr11 36997869 36998168 -111785304 - AluY SINE Alu -11 300 1 288 299 0 0 chr11 36998600 36998677 -111784795 - MIR SINE MIR -100 162 86 388 324 27 7 chr11 36999013 36999161 -111784311 + MIR3 SINE MIR 17 167 -41 285 174 130 54 chr11 36999372 36999464 -111784008 - LTR33A LTR ERVL -4 519 421 603 292 97 45 chr11 36999822 37000206 -111783266 - MLT1I LTR MaLR 0 409 38 784 192 0 0 chr11 37001736 37001866 -111781606 + FLAM_A SINE Alu 4 133 0 188 205 26 0 chr11 37002058 37002097 -111781375 + L2 LINE L2 3269 3308 -5 207 0 0 0 chr11 37002242 37002265 -111781207 + (TG)n Simple_repeat Simple_repeat 2 24 0 1940 141 4 0 chr11 37002265 37002542 -111780930 - AluSx SINE Alu -34 278 1 406 274 95 12 chr11 37002646 37002814 -111780658 + MIR SINE MIR 58 239 -23 478 251 65 6 chr11 37003456 37003638 -111779834 + MIR SINE MIR 22 212 -50 225 0 0 0 chr11 37003688 37003713 -111779759 + (A)n Simple_repeat Simple_repeat 1 25 0 1629 64 10 0 chr11 37003942 37004145 -111779327 + L1PB1 LINE L1 5945 6149 -2 354 315 51 28 chr11 37004223 37004401 -111779071 + MIR SINE MIR 79 260 -2 300 264 218 0 chr11 37004744 37004854 -111778618 - L2 LINE L2 0 3272 3139 354 224 129 54 chr11 37004941 37005088 -111778384 + MIR3 SINE MIR 33 190 -18 602 272 11 17 chr11 37005735 37005915 -111777557 - LTR33 LTR ERVL -240 281 103 192 368 0 0 chr11 37006305 37006381 -111777091 - MIR SINE MIR -7 255 180 545 239 0 0 chr11 37007580 37007689 -111775783 - L2 LINE L2 0 3313 3205 236 275 154 0 chr11 37007689 37007780 -111775692 + MER91C DNA MER1_type 1 105 -35 346 298 48 8 chr11 37007832 37007956 -111775516 - MIR SINE MIR -92 170 42 263 269 15 0 chr11 37010887 37010954 -111772518 + MIR SINE MIR 86 153 -109 415 249 133 93 chr11 37011111 37011253 -111772219 - L1ME4a LINE L1 -30 6091 5956 1687 161 44 3 chr11 37011253 37011551 -111771921 - L1MB3 LINE L1 -1 6182 5873 415 249 133 93 chr11 37011551 37011673 -111771799 - L1ME4a LINE L1 -165 5956 5840 2249 112 7 0 chr11 37011673 37011969 -111771503 - AluSx SINE Alu -14 298 1 415 249 133 93 chr11 37011969 37012200 -111771272 - L1ME4a LINE L1 -281 5840 5575 180 274 145 0 chr11 37012549 37012611 -111770861 + L3 LINE CR1 1505 1575 -2 2355 86 0 43 chr11 37013432 37013757 -111769715 + AluSx SINE Alu 1 311 -1 29 28 0 0 chr11 37014148 37014184 -111769288 + AT_rich Low_complexity Low_complexity 1 36 0 425 315 59 5 chr11 37014196 37014399 -111769073 - L1MC5 LINE L1 -60 7901 7688 1697 151 28 47 chr11 37014802 37015119 -111768353 - AluSq SINE Alu -2 311 1 408 207 69 86 chr11 37015119 37015293 -111768179 - Charlie7 DNA MER1_type -8 2604 2434 253 194 15 30 chr11 37015280 37015347 -111768125 - Charlie7 DNA MER1_type -2512 100 35 * 535 308 76 0 chr11 37015382 37015554 -111767918 + MIR SINE MIR 1 185 -77 756 168 0 98 chr11 37017076 37017219 -111766253 - FLAM_C SINE Alu -4 129 1 2509 174 0 18 chr11 37017703 37018139 -111765333 + L1MB5 LINE L1 5747 6174 0 232 142 57 132 chr11 37018147 37018253 -111765219 + HAL1 LINE L1 100 197 -2310 2424 263 136 55 chr11 37018568 37020266 -111763206 + HAL1 LINE L1 592 2425 -82 523 255 88 57 chr11 37020270 37020462 -111763010 - MIR SINE MIR -62 200 3 3757 131 35 13 chr11 37020595 37021197 -111762275 + L1MB3 LINE L1 5370 5984 -199 1101 253 129 82 chr11 37021294 37022107 -111761365 - HAL1 LINE L1 -2 2505 1655 279 277 177 7 chr11 37022467 37022608 -111760864 - MIR SINE MIR -6 256 92 663 260 117 87 chr11 37022610 37023079 -111760393 - L2 LINE L2 -3 3310 2828 193 250 47 31 chr11 37023218 37023282 -111760190 - MIR SINE MIR -126 82 18 4036 191 29 27 chr11 37024351 37024787 -111758685 + MER63C DNA MER1_type 83 523 -537 933 223 13 44 chr11 37024787 37025016 -111758456 + MER58A DNA MER1_type 3 224 0 4036 191 29 27 chr11 37025016 37025401 -111758071 + MER63C DNA MER1_type 523 906 -24 271 323 47 8 chr11 37026427 37026554 -111756918 - L2 LINE L2 -9 3304 3173 * 1737 241 226 13 chr11 37026541 37027223 -111756249 - L2 LINE L2 -412 2902 2076 449 294 65 7 chr11 37027639 37027792 -111755680 + MIR SINE MIR 53 214 -48 197 329 41 14 chr11 37028548 37028621 -111754851 + MIR3 SINE MIR 111 185 -23 281 253 74 11 chr11 37029169 37029264 -111754208 - MIR3 SINE MIR -11 197 97 183 42 0 0 chr11 37029548 37029572 -111753900 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 740 300 36 4 chr11 37029591 37029844 -111753628 - MIR SINE MIR 0 262 2 181 368 0 0 chr11 37030193 37030269 -111753203 - MIR SINE MIR -16 246 171 839 266 16 18 chr11 37030456 37030705 -111752767 + MIR SINE MIR 4 248 -14 2043 90 30 8 chr11 37031573 37031841 -111751631 - AluY SINE Alu -13 298 25 282 227 86 23 chr11 37031901 37032029 -111751443 - L1ME4a LINE L1 0 6515 6380 * 701 276 96 27 chr11 37032028 37032419 -111751053 - L1ME4a LINE L1 -948 5592 5181 259 279 84 45 chr11 37032601 37032780 -111750692 - MLT1J1 LTR MaLR -230 216 31 2610 302 48 19 chr11 37032806 37034239 -111749233 - L1ME4a LINE L1 -1347 5193 3719 882 184 5 38 chr11 37034258 37034470 -111749002 - L1MA7 LINE L1 -2 6289 6085 361 221 0 39 chr11 37034472 37034548 -111748924 + Tigger5 DNA MER2_type 6 78 -2245 368 167 0 0 chr11 37034548 37034608 -111748864 - Tigger5 DNA MER2_type -3 2320 2261 3217 165 25 7 chr11 37034655 37035226 -111748246 - L1MA7 LINE L1 -202 6089 5509 414 271 62 13 chr11 37035226 37035451 -111748021 - L1ME4a LINE L1 -2837 3703 3468 * 543 240 72 25 chr11 37035448 37035709 -111747763 - L1MDa LINE L1 -4974 1556 1276 1144 270 51 36 chr11 37036134 37036601 -111746871 + L2 LINE L2 2827 3300 -13 461 296 25 20 chr11 37036604 37036800 -111746672 - MIR SINE MIR -35 227 31 321 280 117 37 chr11 37037643 37037857 -111745615 + MIR SINE MIR 20 250 -12 228 262 41 57 chr11 37038113 37038187 -111745285 - MER5A DNA MER1_type -69 120 47 1882 192 28 3 chr11 37038187 37038541 -111744931 + MLT1A1 LTR MaLR 1 363 -2 228 262 41 57 chr11 37038541 37038588 -111744884 - MER5A DNA MER1_type -142 47 1 192 266 31 0 chr11 37038865 37038929 -111744543 + MIR SINE MIR 79 144 -64 671 258 80 15 chr11 37038964 37039288 -111744184 - LTR33A LTR ERVL -2 521 139 213 322 41 16 chr11 37039297 37039418 -111744054 + MIR3 SINE MIR 78 201 -7 229 250 105 53 chr11 37040318 37040470 -111743002 + MER5A DNA MER1_type 2 161 -28 744 260 100 51 chr11 37040559 37040919 -111742553 - L1ME LINE L1 -390 5780 5398 2511 90 0 0 chr11 37040919 37041229 -111742243 - AluSq SINE Alu -3 310 1 744 260 100 51 chr11 37041229 37041257 -111742215 - L1ME LINE L1 -772 5398 5373 243 139 0 0 chr11 37041891 37041927 -111741545 - U2 snRNA snRNA -152 36 1 704 278 9 48 chr11 37043898 37044128 -111739344 - MIR SINE MIR -19 243 23 264 307 183 0 chr11 37044154 37044291 -111739181 + MER5A DNA MER1_type 28 189 0 966 117 394 0 chr11 37044339 37044552 -111738920 - L1PA11 LINE L1 0 6174 5878 392 326 8 0 chr11 37044687 37044819 -111738653 + MIR SINE MIR 17 149 -59 542 324 21 29 chr11 37045421 37045659 -111737813 - MIR SINE MIR -13 249 14 271 245 77 49 chr11 37045746 37045889 -111737583 - MER5B DNA MER1_type -6 172 26 1799 164 10 10 chr11 37046239 37046532 -111736940 + AluSx SINE Alu 1 293 -19 504 249 41 22 chr11 37046666 37047030 -111736442 + MER113 DNA MER1_type? 45 475 -46 402 194 23 132 chr11 37047060 37047189 -111736283 + L2 LINE L2 3189 3303 -10 198 71 0 0 chr11 37047751 37047779 -111735693 + (TAA)n Simple_repeat Simple_repeat 1 28 0 270 338 66 10 chr11 37048515 37048713 -111734759 - L2 LINE L2 -390 2924 2716 341 238 10 20 chr11 37049168 37049269 -111734203 + MIR SINE MIR 46 145 -63 211 220 0 0 chr11 37049457 37049507 -111733965 + (TA)n Simple_repeat Simple_repeat 2 51 0 702 289 189 3 chr11 37049617 37049967 -111733505 - L1MC4a LINE L1 -1884 5924 5510 2028 142 0 0 chr11 37050008 37050296 -111733176 - AluSx SINE Alu -22 290 3 2350 101 3 0 chr11 37050306 37050604 -111732868 - AluSp SINE Alu -14 299 1 393 289 21 59 chr11 37051509 37051696 -111731776 - MIR SINE MIR -51 211 32 534 281 65 10 chr11 37052556 37052755 -111730717 + MIR SINE MIR 49 258 -4 353 231 164 0 chr11 37052785 37052889 -111730583 - MIR SINE MIR -113 149 29 557 226 172 10 chr11 37053256 37053460 -111730012 + MIR SINE MIR 12 248 -14 366 238 89 0 chr11 37053752 37053853 -111729619 - MIR SINE MIR -74 188 79 545 192 96 0 chr11 37053896 37054000 -111729472 + MER81 DNA DNA 1 114 0 264 313 80 0 chr11 37054323 37054435 -111729037 + L2 LINE L2 3186 3306 -7 362 224 48 16 chr11 37054751 37054876 -111728596 + MER113 DNA MER1_type? 6 134 -387 202 179 36 18 chr11 37055194 37055250 -111728222 + CT-rich Low_complexity Low_complexity 1 57 0 523 304 19 39 chr11 37057159 37057416 -111726056 + MIR SINE MIR 11 262 0 2370 98 6 13 chr11 37057483 37057798 -111725674 - AluSq SINE Alu 0 313 1 297 285 66 0 chr11 37057915 37058052 -111725420 - MIR SINE MIR -6 256 111 188 265 108 48 chr11 37058434 37058517 -111724955 - MER5A DNA MER1_type -68 121 34 987 121 55 55 chr11 37058718 37058871 -111724601 + L1MA8 LINE L1 6064 6219 -72 243 0 0 0 chr11 37058871 37058898 -111724574 + (TG)n Simple_repeat Simple_repeat 2 28 0 987 121 55 55 chr11 37058898 37058943 -111724529 + L1MA8 LINE L1 6218 6262 -29 313 175 0 25 chr11 37058931 37059011 -111724461 + L1MA8 LINE L1 6213 6290 -1 * 218 189 0 0 chr11 37059473 37059510 -111723962 + (TG)n Simple_repeat Simple_repeat 2 38 0 586 0 27 0 chr11 37060869 37060943 -111722529 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2068 129 14 0 chr11 37065376 37065670 -111717802 - AluSx SINE Alu -14 298 1 313 253 140 27 chr11 37067146 37067296 -111716176 + MIR3 SINE MIR 30 196 -12 599 245 46 15 chr11 37069076 37069272 -111714200 + MIR SINE MIR 17 218 -44 306 0 0 0 chr11 37069397 37069431 -111714041 + (TG)n Simple_repeat Simple_repeat 1 34 0 1073 212 108 19 chr11 37069974 37070280 -111713192 + Charlie4a DNA MER1_type 1 333 -175 485 116 0 70 chr11 37070280 37070337 -111713135 - MADE1 DNA Mariner 0 80 29 1489 113 52 9 chr11 37070337 37070549 -111712923 + AluSg/x SINE Alu 83 303 -7 485 116 0 70 chr11 37070549 37070577 -111712895 - MADE1 DNA Mariner -51 29 1 * 563 203 55 39 chr11 37070577 37070753 -111712719 + Charlie4a DNA MER1_type 329 507 -1 201 284 59 39 chr11 37070917 37071019 -111712453 - MIR SINE MIR 0 262 159 1017 211 0 0 chr11 37071115 37071290 -111712182 + MER45A DNA AcHobo 4 178 0 507 246 123 0 chr11 37072570 37072741 -111710731 + MIR SINE MIR 70 261 -1 2130 141 0 3 chr11 37073317 37073622 -111709850 - AluSx SINE Alu -8 304 1 413 243 18 36 chr11 37075077 37075188 -111708284 + L2 LINE L2 3156 3264 -8 189 250 0 0 chr11 37077012 37077072 -111706400 + (TA)n Simple_repeat Simple_repeat 1 60 0 562 258 78 46 chr11 37077214 37077431 -111706041 + MIR SINE MIR 38 261 -1 1091 88 0 0 chr11 37077739 37077876 -111705596 - AluSp/q SINE Alu -8 305 169 712 271 57 28 chr11 37078447 37078694 -111704778 - MIR SINE MIR -1 261 8 393 309 82 47 chr11 37078778 37079011 -111704461 - MIR SINE MIR -2 260 20 2491 67 13 0 chr11 37079043 37079342 -111704130 + AluSp SINE Alu 1 303 -10 2454 86 0 0 chr11 37080191 37080494 -111702978 - AluSx SINE Alu -9 303 1 284 251 230 21 chr11 37080674 37080865 -111702607 - MIR SINE MIR -30 232 2 626 165 63 0 chr11 37080899 37081026 -111702446 + MER20 DNA MER1_type 85 219 0 331 253 73 49 chr11 37081377 37081511 -111701961 - MIR SINE MIR -54 154 9 412 313 59 74 chr11 37082298 37082554 -111700918 - MIR SINE MIR -9 253 2 220 153 106 71 chr11 37083017 37083102 -111700370 - MIR3 SINE MIR -7 201 114 576 241 94 49 chr11 37083150 37083374 -111700098 - MIR SINE MIR -1 261 28 409 195 24 0 chr11 37083578 37083660 -111699812 + L2 LINE L2 3230 3313 0 303 93 0 0 chr11 37085358 37085401 -111698071 + (TG)n Simple_repeat Simple_repeat 1 43 0 501 216 216 0 chr11 37087075 37087209 -111696263 + MER5A DNA MER1_type 27 189 0 303 28 0 0 chr11 37088320 37088356 -111695116 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 174 22 0 chr11 37088359 37088405 -111695067 + GA-rich Low_complexity Low_complexity 2 48 0 212 77 26 0 chr11 37089331 37089370 -111694102 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 445 195 195 0 chr11 37090426 37090554 -111692918 - MIR SINE MIR -6 256 104 210 118 0 0 chr11 37090630 37090664 -111692808 + (TA)n Simple_repeat Simple_repeat 2 35 0 400 257 28 76 chr11 37090879 37091023 -111692449 - MIR3 SINE MIR -11 197 61 27 29 0 0 chr11 37093400 37093434 -111690038 + AT_rich Low_complexity Low_complexity 1 34 0 219 103 0 0 chr11 37095424 37095463 -111688009 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 238 367 0 0 chr11 37095674 37095753 -111687719 - L3 LINE CR1 -107 1470 1392 1095 231 12 8 chr11 37097756 37097998 -111685474 + MIR SINE MIR 6 248 -14 396 71 0 0 chr11 37098319 37098375 -111685097 + (CA)n Simple_repeat Simple_repeat 2 57 0 564 267 218 16 chr11 37098684 37099106 -111684366 + L2 LINE L2 2731 3313 0 1984 138 0 0 chr11 37099790 37100066 -111683406 + AluJb SINE Alu 21 296 -16 549 296 6 45 chr11 37100490 37100666 -111682806 + MIR3 SINE MIR 40 208 0 1154 156 52 28 chr11 37102054 37102266 -111681206 - MER20 DNA MER1_type 0 219 3 389 297 110 0 chr11 37104334 37104452 -111679020 + L2 LINE L2 3142 3272 0 222 200 0 0 chr11 37104998 37105038 -111678434 - L2 LINE L2 -9 3263 3224 908 307 101 20 chr11 37105645 37106258 -111677214 - L2 LINE L2 -5 3308 2654 494 284 34 25 chr11 37106436 37106640 -111676832 - MIR SINE MIR 0 262 57 201 74 0 0 chr11 37106735 37106762 -111676710 + (CA)n Simple_repeat Simple_repeat 2 28 0 569 219 8 0 chr11 37106775 37106894 -111676578 + MER103 DNA DNA 44 163 -3 845 203 16 6 chr11 37107224 37107406 -111676066 - MER3 DNA MER1_type -25 184 1 325 328 41 8 chr11 37107969 37108091 -111675381 + L2 LINE L2 2910 3035 -278 1034 118 0 0 chr11 37108209 37108353 -111675119 + LTR8 LTR ERV1 443 586 -105 198 395 18 9 chr11 37108388 37108502 -111674970 + L2 LINE L2 3145 3259 -13 273 29 0 0 chr11 37108504 37108538 -111674934 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 282 326 121 0 chr11 37108837 37108969 -111674503 + MIR SINE MIR 40 187 -75 2232 95 3 36 chr11 37109002 37109307 -111674165 - AluSp SINE Alu -17 296 2 398 293 160 24 chr11 37109324 37109536 -111673936 - MIR SINE MIR -21 241 1 275 130 19 0 chr11 37110294 37110348 -111673124 + (TG)n Simple_repeat Simple_repeat 2 56 0 1637 197 3 16 chr11 37111074 37111389 -111672083 - AluJo SINE Alu -1 311 1 409 275 35 42 chr11 37111419 37111564 -111671908 + MIR SINE MIR 1 151 -57 327 303 34 57 chr11 37111648 37111823 -111671649 + MIR3 SINE MIR 35 205 -3 446 258 197 34 chr11 37112122 37112300 -111671172 - MIR SINE MIR -8 254 48 244 224 138 46 chr11 37112786 37112938 -111670534 - HAL1b LINE L1 -5 1343 1178 907 267 89 35 chr11 37113043 37113560 -111669912 - HAL1b LINE L1 -187 1161 617 606 325 30 63 chr11 37113640 37114067 -111669405 + MLT1K LTR MaLR 103 515 -73 601 311 80 26 chr11 37115071 37115910 -111667562 + L1ME LINE L1 676 1558 -4522 938 229 18 0 chr11 37116430 37116600 -111666872 - FAM SINE Alu -1 174 2 492 160 47 38 chr11 37116710 37116816 -111666656 - L1MA8 LINE L1 -275 6016 5910 * 4567 162 43 7 chr11 37116814 37117927 -111665545 - L1MA8 LINE L1 -666 5625 4472 300 27 0 0 chr11 37118684 37118721 -111664751 + (TG)n Simple_repeat Simple_repeat 2 38 0 463 302 130 12 chr11 37118942 37119111 -111664361 + MIR SINE MIR 1 189 -73 443 281 16 0 chr11 37119115 37119236 -111664236 - L2 LINE L2 -2 3311 3189 277 148 56 0 chr11 37119237 37119291 -111664181 + MIR SINE MIR 194 250 -12 2119 219 72 41 chr11 37119478 37119994 -111663478 + MLT1F LTR MaLR 9 540 -2 2474 82 5 123 chr11 37120137 37120550 -111662922 + THE1B LTR MaLR 1 364 0 189 147 0 0 chr11 37121194 37121228 -111662244 + (TG)n Simple_repeat Simple_repeat 1 34 0 219 364 11 11 chr11 37121604 37121692 -111661780 - MIR SINE MIR -147 115 28 680 299 45 5 chr11 37122235 37122436 -111661036 + MIR SINE MIR 2 210 -52 428 277 0 0 chr11 37122440 37122541 -111660931 - MIR SINE MIR -6 256 156 510 266 149 16 chr11 37123058 37123246 -111660226 - MIR SINE MIR -10 252 40 22 35 0 0 chr11 37124520 37124549 -111658923 + AT_rich Low_complexity Low_complexity 1 29 0 258 256 44 0 chr11 37124644 37124734 -111658738 - L1ME4a LINE L1 -188 5933 5840 601 313 31 40 chr11 37124750 37124980 -111658492 - MIR SINE MIR -3 259 34 468 219 9 0 chr11 37125001 37125106 -111658366 + HsTC2 DNA Tc2 1790 1895 -3 241 45 23 23 chr11 37126037 37126081 -111657391 + (TA)n Simple_repeat Simple_repeat 1 44 0 230 336 46 0 chr11 37126387 37126518 -111656954 - L1ME4a LINE L1 -796 5548 5412 1355 87 34 10 chr11 37126518 37126725 -111656747 + L1MA8 LINE L1 6075 6286 -5 296 253 39 71 chr11 37126972 37127243 -111656229 - L1ME4a LINE L1 -952 5194 4941 312 48 0 0 chr11 37128015 37128057 -111655415 + (CA)n Simple_repeat Simple_repeat 1 42 0 824 308 128 9 chr11 37128529 37128983 -111654489 - L1ME LINE L1 -361 5870 5363 378 143 45 0 chr11 37128986 37129119 -111654353 + (TA)n Simple_repeat Simple_repeat 2 140 0 243 0 0 0 chr11 37129187 37129214 -111654258 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 354 162 9 171 chr11 37129227 37129338 -111654134 + MLT1A2 LTR MaLR 1 93 -281 960 91 8 0 chr11 37129357 37129489 -111653983 - L1PB1 LINE L1 -1 6150 6018 22746 49 40 6 chr11 37129489 37135351 -111648121 - L1PA2 LINE L1 -3 6152 12 327 303 59 53 chr11 37135348 37135860 -111647612 - L1ME LINE L1 -855 5360 4846 * 928 300 68 29 chr11 37135927 37136747 -111646725 - L1ME LINE L1 -1499 4716 3865 8109 168 36 13 chr11 37136782 37138549 -111644923 - L1 LINE L1 -1185 4961 3155 3165 132 0 34 chr11 37138551 37139081 -111644391 - L1PA15 LINE L1 -15 6150 5639 825 306 78 42 chr11 37139578 37139961 -111643511 + LTR16A1 LTR ERVL 61 457 0 24 32 0 0 chr11 37140244 37140275 -111643197 + AT_rich Low_complexity Low_complexity 1 31 0 2049 127 0 3 chr11 37140455 37140746 -111642726 - AluSg SINE Alu -20 290 1 1010 248 37 35 chr11 37140799 37141234 -111642238 - L1ME LINE L1 -2329 3886 3451 1833 90 27 0 chr11 37141244 37141500 -111641972 + L1PB1 LINE L1 5884 6146 -5 28 0 0 0 chr11 37141500 37141528 -111641944 + AT_rich Low_complexity Low_complexity 1 28 0 1659 199 0 7 chr11 37141530 37141821 -111641651 + AluJb SINE Alu 3 291 -21 240 88 53 0 chr11 37141828 37141885 -111641587 + (TA)n Simple_repeat Simple_repeat 1 60 0 6640 134 12 4 chr11 37142008 37143736 -111639736 - L1MA2 LINE L1 -5 7718 5977 5785 188 151 13 chr11 37143736 37145242 -111638230 + MER52A LTR ERV1 1 1755 0 9809 180 61 13 chr11 37145243 37150273 -111633199 - L1MA2 LINE L1 -1586 5979 19 2454 221 45 35 chr11 37150290 37151294 -111632178 - L1MEc LINE L1 -2868 3347 2368 2192 122 3 0 chr11 37151294 37151588 -111631884 - AluSq SINE Alu -18 295 1 2454 221 45 35 chr11 37151588 37151641 -111631831 - L1MEc LINE L1 -3847 2368 2317 520 239 22 25 chr11 37152326 37152555 -111630917 - L1MEc LINE L1 -3921 2322 2070 1585 291 79 20 chr11 37152650 37153887 -111629585 - L1MEc LINE L1 -4462 1934 625 1794 168 139 13 chr11 37154116 37154496 -111628976 + MSTA LTR MaLR 1 428 0 9178 135 4 39 chr11 37154502 37156126 -111627346 + MSTA-int LTR MaLR 6 1573 -7 1646 184 149 11 chr11 37156132 37156508 -111626964 + MSTA LTR MaLR 1 428 0 402 366 44 7 chr11 37156534 37156832 -111626640 - L1MEc LINE L1 -6013 383 75 218 315 0 0 chr11 37156867 37156921 -111626551 - MER5B DNA MER1_type -123 55 2 225 0 0 0 chr11 37157381 37157406 -111626066 + (TTG)n Simple_repeat Simple_repeat 3 27 0 710 273 64 29 chr11 37157506 37157817 -111625655 + MER102b DNA MER1_type 11 332 -9 1527 249 48 11 chr11 37158354 37158965 -111624507 + L1ME2 LINE L1 4156 4788 -1358 2121 172 26 28 chr11 37158967 37159426 -111624046 - MLT1C LTR MaLR -2 465 8 545 223 12 42 chr11 37159433 37159599 -111623873 + L1ME2 LINE L1 4784 4944 -1202 1012 255 61 65 chr11 37159601 37160076 -111623396 + L1ME2 LINE L1 5671 6143 -21 3924 251 114 43 chr11 37160379 37162241 -111621231 - L2 LINE L2 -2 3311 1330 464 244 46 0 chr11 37162494 37162625 -111620847 - L1ME LINE L1 -400 5721 5585 1904 264 73 27 chr11 37162962 37163549 -111619923 + MER115 DNA AcHobo 57 670 -23 206 287 219 56 chr11 37163994 37164297 -111619175 - L2 LINE L2 -76 3196 2848 268 307 34 74 chr11 37164311 37164606 -111618866 + L2 LINE L2 2920 3307 -6 2552 59 0 0 chr11 37164608 37164912 -111618560 + AluY SINE Alu 1 304 -7 211 189 0 0 chr11 37164923 37164960 -111618512 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 294 349 54 108 chr11 37165106 37165421 -111618051 - L2 LINE L2 -9 3263 2966 2697 87 0 3 chr11 37165598 37165954 -111617518 - THE1A LTR MaLR 0 355 1 720 315 116 43 chr11 37166083 37166998 -111616474 + L1MEd LINE L1 268 1249 -4870 364 304 72 58 chr11 37167029 37167236 -111616236 + HAL1 LINE L1 1397 1606 -901 1335 249 31 0 chr11 37167254 37167571 -111615901 + L1M4b LINE L1 2 328 -6531 907 145 12 29 chr11 37167572 37167744 -111615728 + MLT1D LTR MaLR 1 169 -336 808 258 72 31 chr11 37167782 37168295 -111615177 + L1ME LINE L1 5165 5702 -468 661 304 96 5 chr11 37168413 37168633 -111614839 + MIR SINE MIR 23 262 0 340 316 80 59 chr11 37168824 37169011 -111614461 + MIR SINE MIR 8 198 -64 322 268 12 89 chr11 37169455 37169623 -111613849 - MIR SINE MIR -43 219 65 5549 183 23 15 chr11 37170035 37172181 -111611291 - L1PA16 LINE L1 0 6166 4004 3482 180 11 10 chr11 37172184 37172967 -111610505 + L1PA16 LINE L1 3242 4025 -2121 370 178 22 0 chr11 37173882 37173972 -111609500 + (TG)n Simple_repeat Simple_repeat 1 92 0 222 37 0 0 chr11 37175261 37175288 -111608184 + (CA)n Simple_repeat Simple_repeat 2 28 0 2411 95 0 0 chr11 37175438 37175743 -111607729 + AluY SINE Alu 1 305 -6 697 215 44 57 chr11 37176108 37176326 -111607146 - MIR SINE MIR -46 216 3 237 156 31 16 chr11 37176616 37176680 -111606792 + (TA)n Simple_repeat Simple_repeat 1 65 0 2277 189 99 32 chr11 37176694 37176905 -111606567 + MLT1E2 LTR MaLR 2 198 -428 1725 117 4 0 chr11 37176905 37177136 -111606336 + AluSg/x SINE Alu 69 300 -10 2277 189 99 32 chr11 37177136 37177510 -111605962 + MLT1E2 LTR MaLR 198 626 0 354 279 50 38 chr11 37177802 37178113 -111605359 + MLT1I LTR MaLR 46 407 -2 462 313 45 8 chr11 37178401 37178535 -111604937 - MIR SINE MIR -95 167 29 182 105 26 53 chr11 37178839 37178877 -111604595 - L2 LINE L2 -685 2629 2593 279 281 158 26 chr11 37179398 37179512 -111603960 + MIR SINE MIR 23 151 -111 20836 111 15 55 chr11 37179571 37184578 -111598894 + L1P LINE L1 9 4749 -1397 1068 196 67 25 chr11 37185236 37185476 -111597996 + MLT1C LTR MaLR 170 419 -48 304 247 0 0 chr11 37185494 37185583 -111597889 - L1MC4 LINE L1 -1340 6702 6614 234 150 0 0 chr11 37185586 37185626 -111597846 + (TA)n Simple_repeat Simple_repeat 1 40 0 236 284 23 0 chr11 37185627 37185715 -111597757 + L1MC4 LINE L1 6614 6703 -1339 241 239 0 43 chr11 37185830 37185922 -111597550 - L1MC4 LINE L1 -1340 6702 6615 270 175 31 31 chr11 37186062 37186159 -111597313 - L1ME4a LINE L1 -46 6075 5979 2040 139 0 17 chr11 37186167 37186469 -111597003 - AluSx SINE Alu -15 297 1 316 303 83 64 chr11 37186595 37186813 -111596659 - L1ME4a LINE L1 -266 5855 5634 1641 153 53 0 chr11 37187073 37187335 -111596137 + AluJo SINE Alu 14 289 -23 207 69 0 0 chr11 37187338 37187367 -111596105 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 23 0 0 0 chr11 37187827 37187850 -111595622 + AT_rich Low_complexity Low_complexity 1 23 0 242 270 0 32 chr11 37187870 37187933 -111595539 + L2 LINE L2 3207 3267 -5 1623 251 71 64 chr11 37188175 37189061 -111594411 + HAL1 LINE L1 1603 2494 -13 221 255 0 0 chr11 37189698 37189749 -111593723 - MIR SINE MIR 0 262 212 476 91 0 0 chr11 37189849 37189915 -111593557 - AluSc SINE Alu -70 239 174 29 0 0 0 chr11 37191388 37191417 -111592055 + AT_rich Low_complexity Low_complexity 1 29 0 454 174 0 11 chr11 37191577 37191669 -111591803 - MLT1B LTR MaLR 0 390 300 1697 158 17 30 chr11 37192314 37192611 -111590861 - AluJo SINE Alu -19 293 1 2002 122 0 4 chr11 37193138 37193416 -111590056 + AluSx SINE Alu 1 277 -35 778 178 97 0 chr11 37193530 37193715 -111589757 - MIR SINE MIR -43 219 17 2617 37 46 0 chr11 37193764 37194092 -111589380 - L1PA4 LINE L1 -8 6147 5805 657 288 123 64 chr11 37194618 37195090 -111588382 + L2 LINE L2 2814 3313 0 2067 148 3 0 chr11 37195702 37196032 -111587440 + MER7A DNA MER2_type 18 346 0 310 267 22 0 chr11 37196618 37196708 -111586764 + GA-rich Low_complexity Low_complexity 3 94 0 457 318 85 76 chr11 37197731 37198059 -111585413 + L2 LINE L2 2847 3182 -90 1915 124 33 0 chr11 37198059 37198360 -111585112 - AluSx SINE Alu 0 310 1 457 318 85 76 chr11 37198360 37198452 -111585020 + L2 LINE L2 3182 3272 0 24 0 0 0 chr11 37198684 37198708 -111584764 + AT_rich Low_complexity Low_complexity 1 24 0 391 278 153 17 chr11 37198800 37198976 -111584496 - MIR SINE MIR -35 227 28 431 256 25 16 chr11 37199018 37199139 -111584333 - MIR3 SINE MIR -43 165 44 275 301 12 0 chr11 37199703 37199786 -111583686 - MIR SINE MIR -19 243 160 1291 158 58 70 chr11 37199805 37200133 -111583339 - L1ME1 LINE L1 -4 6162 5839 384 316 82 0 chr11 37200149 37200283 -111583189 - MIR SINE MIR -56 152 4 625 242 154 6 chr11 37200647 37200829 -111582643 + MIR SINE MIR 43 251 -11 344 240 27 0 chr11 37200941 37201016 -111582456 - L2 LINE L2 -5 3308 3232 21 37 0 56 chr11 37201078 37201132 -111582340 + AT_rich Low_complexity Low_complexity 1 51 0 189 74 0 0 chr11 37201140 37201167 -111582305 + (TA)n Simple_repeat Simple_repeat 1 27 0 317 273 152 36 chr11 37201167 37201332 -111582140 - MIR SINE MIR -33 229 46 831 146 0 31 chr11 37202009 37202139 -111581333 + FLAM_A SINE Alu 2 127 -6 685 246 121 0 chr11 37202279 37202543 -111580929 - MER119 DNA MER1_type 0 583 288 1812 148 83 15 chr11 37202882 37203207 -111580265 + MER7A DNA MER2_type 2 346 0 280 292 74 79 chr11 37203548 37203769 -111579703 - L2 LINE L2 -270 3002 2776 256 312 118 51 chr11 37203991 37204228 -111579244 + MLT1K LTR MaLR 329 581 -7 242 244 0 0 chr11 37204761 37204806 -111578666 + MIR SINE MIR 78 122 -86 298 177 48 0 chr11 37204837 37204899 -111578573 - MIR SINE MIR -1 261 197 372 323 8 15 chr11 37205003 37205133 -111578339 - MIR3 SINE MIR -36 172 44 372 323 92 18 chr11 37205148 37205808 -111577664 + L1ME LINE L1 4382 5090 -1056 235 273 68 45 chr11 37206020 37206196 -111577276 + L1ME LINE L1 5384 5563 -607 37680 40 1 2 chr11 37206244 37211019 -111572453 - L1P LINE L1 -1367 4779 8 12399 199 24 18 chr11 37211019 37216731 -111566741 - L1 LINE L1 -1195 5972 189 4928 189 33 32 chr11 37216728 37217542 -111565930 - L1PA13 LINE L1 -4257 2540 1702 * 2397 103 0 0 chr11 37217542 37217853 -111565619 + AluY SINE Alu 1 311 0 4928 189 33 32 chr11 37217853 37218345 -111565127 - L1PA13 LINE L1 -5095 1702 1212 465 309 31 0 chr11 37218747 37218909 -111564563 - MIR SINE MIR -22 240 74 183 274 96 14 chr11 37219801 37219874 -111563598 + MIR SINE MIR 56 134 -128 784 253 37 11 chr11 37220705 37220895 -111562577 - MIR SINE MIR -14 248 54 691 240 99 8 chr11 37221012 37221254 -111562218 - L1ME3A LINE L1 -25 6145 5882 1505 232 22 74 chr11 37221254 37221806 -111561666 - MER65B LTR ERV1 -6 525 3 937 251 27 7 chr11 37221808 37222122 -111561350 - L1ME3A LINE L1 -279 5885 5550 390 231 19 13 chr11 37222122 37222278 -111561194 - L1ME3A LINE L1 -987 5159 5003 21 0 0 0 chr11 37222281 37222302 -111561170 + AT_rich Low_complexity Low_complexity 1 21 0 4642 141 21 0 chr11 37222333 37223185 -111560287 - L1MA8 LINE L1 -199 6092 5225 1613 158 108 9 chr11 37223185 37223501 -111559971 - MER47A DNA MER2_type 0 366 20 11303 182 35 12 chr11 37223507 37224407 -111559065 - L1MA8 LINE L1 -924 5222 4344 2270 102 0 0 chr11 37224407 37224702 -111558770 + AluSg SINE Alu 1 295 -15 11303 182 35 12 chr11 37224702 37226359 -111557113 - L1MA8 LINE L1 -1802 4344 2607 886 260 94 55 chr11 37226369 37226973 -111556499 - L1ME3A LINE L1 -1145 5001 4374 4761 141 4 4 chr11 37226982 37227388 -111556084 - L1PA16 LINE L1 -9 6157 5752 2706 17 0 0 chr11 37227388 37227688 -111555784 - AluYb8 SINE Alu 0 318 19 4761 141 4 4 chr11 37227688 37228266 -111555206 - L1PA16 LINE L1 -413 5753 5145 2149 209 18 27 chr11 37228274 37228644 -111554828 - L1 LINE L1 -1860 4286 3921 2604 48 7 3 chr11 37228644 37228953 -111554519 + AluY SINE Alu 1 310 -1 2149 209 18 27 chr11 37228953 37229131 -111554341 - L1 LINE L1 -2225 3921 3743 21 95 0 0 chr11 37229131 37229194 -111554278 + AT_rich Low_complexity Low_complexity 1 63 0 299 273 34 0 chr11 37229194 37229282 -111554190 + MIR SINE MIR 172 262 0 205 250 50 38 chr11 37230438 37230518 -111552954 - L2 LINE L2 -8 3305 3225 717 279 85 0 chr11 37230528 37230729 -111552743 - MIR SINE MIR -30 232 15 946 200 63 5 chr11 37230921 37231126 -111552346 - MER20 DNA MER1_type 0 219 3 7229 250 51 15 chr11 37231213 37233961 -111549511 + L1ME2 LINE L1 2645 5488 -690 212 268 0 36 chr11 37234027 37234083 -111549389 + MER5A DNA MER1_type 52 105 -84 758 239 94 9 chr11 37234653 37234866 -111548606 + MIR SINE MIR 7 237 -25 221 267 0 17 chr11 37234834 37234894 -111548578 + L2 LINE L2 3210 3268 -4 * 513 0 0 0 chr11 37235075 37235132 -111548340 + (TG)n Simple_repeat Simple_repeat 2 58 0 238 317 112 24 chr11 37235895 37236100 -111547372 + L2 LINE L2 2549 2771 -543 883 265 122 69 chr11 37236200 37236379 -111547093 + MLT1H1 LTR MaLR 22 190 -365 2389 96 0 0 chr11 37236379 37236682 -111546790 - AluSg SINE Alu -3 307 5 883 265 122 69 chr11 37236682 37237044 -111546428 + MLT1H1 LTR MaLR 190 553 -2 234 356 47 54 chr11 37237115 37237264 -111546208 + L2 LINE L2 2932 3079 -193 289 143 0 0 chr11 37237267 37237316 -111546156 - L2 LINE L2 -3 3310 3262 292 346 65 9 chr11 37237417 37237524 -111545948 + L2 LINE L2 3160 3272 0 939 184 14 63 chr11 37238211 37238434 -111545038 + MER20 DNA MER1_type 8 219 0 675 188 169 6 chr11 37238442 37238602 -111544870 - MER5A DNA MER1_type 0 189 4 392 338 12 12 chr11 37239560 37239720 -111543752 - MIR SINE MIR -1 261 102 332 306 53 71 chr11 37240125 37240295 -111543177 - MIR3 SINE MIR -35 173 7 1834 226 58 28 chr11 37240928 37241458 -111542014 + L1ME2 LINE L1 5619 6164 0 373 207 43 35 chr11 37241494 37241610 -111541862 + L1MC5 LINE L1 7815 7931 -30 233 260 0 0 chr11 37242405 37242455 -111541017 - L2 LINE L2 -8 3264 3215 1384 136 0 83 chr11 37242457 37242627 -111540845 + THE1C LTR MaLR 3 150 -225 2172 113 0 0 chr11 37242627 37242933 -111540539 - AluY SINE Alu 0 306 1 1384 136 0 83 chr11 37242933 37243003 -111540469 + THE1C LTR MaLR 150 224 -151 9661 110 47 8 chr11 37243003 37244396 -111539076 + THE1C-int LTR MaLR 134 1580 0 2648 121 28 0 chr11 37244420 37244784 -111538688 + THE1C LTR MaLR 2 375 0 237 247 37 49 chr11 37244785 37244866 -111538606 - L2 LINE L2 -54 3259 3180 333 304 22 0 chr11 37244971 37245063 -111538409 - MIR3 SINE MIR -42 166 73 252 307 57 21 chr11 37245620 37245760 -111537712 + L2 LINE L2 2698 2842 -472 265 279 139 16 chr11 37245871 37246000 -111537472 - L2 LINE L2 -4 3309 3165 557 316 131 33 chr11 37246039 37246368 -111537104 - L2 LINE L2 -354 2960 2574 504 245 28 0 chr11 37246368 37246474 -111536998 + MER81 DNA DNA 5 113 -1 557 316 131 33 chr11 37246474 37246594 -111536878 - L2 LINE L2 -740 2574 2467 488 271 86 7 chr11 37247053 37247204 -111536268 + MIR SINE MIR 35 197 -65 555 314 39 39 chr11 37247386 37247641 -111535831 + MIR SINE MIR 5 259 -3 2735 226 6 3 chr11 37247843 37248490 -111534982 - L1 LINE L1 -800 5346 4698 2148 208 4 0 chr11 37248490 37248951 -111534521 + L1 LINE L1 4253 4715 -1431 * 10724 200 25 5 chr11 37248950 37251426 -111532046 - L1P5 LINE L1 -666 5490 2970 235 344 107 0 chr11 37251636 37251767 -111531705 - MIR SINE MIR -10 252 108 183 213 0 21 chr11 37254642 37254689 -111528783 - L2 LINE L2 0 3313 3268 494 287 7 59 chr11 37254739 37254893 -111528579 + MIR SINE MIR 36 180 -63 600 335 143 22 chr11 37255266 37255361 -111528111 - L2 LINE L2 0 3313 3231 3143 163 14 43 chr11 37255361 37255937 -111527535 - MER89 LTR ERV1 0 559 1 600 335 143 22 chr11 37255937 37256309 -111527163 - L2 LINE L2 -82 3231 2791 514 282 52 85 chr11 37256311 37256712 -111526760 - L2 LINE L2 -636 2678 2291 2102 118 13 16 chr11 37256911 37257215 -111526257 + AluSx SINE Alu 10 312 0 1161 263 56 56 chr11 37257419 37257883 -111525589 + L2 LINE L2 1371 1834 -1480 613 246 7 0 chr11 37257898 37258036 -111525436 - L1ME1 LINE L1 -7 6159 6021 8146 195 39 14 chr11 37258041 37259990 -111523482 + L1M3f LINE L1 7 1907 -4421 2707 45 0 0 chr11 37259990 37260298 -111523174 + AluY SINE Alu 1 308 -3 8146 195 39 14 chr11 37260298 37262428 -111521044 + L1M3f LINE L1 1907 4170 -2158 498 93 0 13 chr11 37262428 37262503 -111520969 - HSMAR1 DNA Mariner -1213 74 1 649 274 53 10 chr11 37262555 37262763 -111520709 + L2 LINE L2 2533 2749 -565 326 211 39 39 chr11 37262763 37262891 -111520581 + L1MC5 LINE L1 7404 7531 -430 326 290 37 65 chr11 37262967 37263181 -111520291 + L1ME3A LINE L1 5962 6169 -1 522 280 96 85 chr11 37263183 37263684 -111519788 + L2 LINE L2 2737 3248 -65 1256 197 18 4 chr11 37263684 37263912 -111519560 - REP3 LTR ERV -11 551 321 2399 122 19 25 chr11 37263912 37264273 -111519199 - THE1B LTR MaLR 0 364 6 12661 90 5 1 chr11 37264273 37265846 -111517626 - THE1B-int LTR MaLR 0 1580 1 2330 120 21 51 chr11 37265846 37266221 -111517251 - THE1B LTR MaLR 0 364 1 1501 239 15 18 chr11 37266221 37266547 -111516925 - REP3 LTR ERV -237 325 1 270 253 0 84 chr11 37266659 37266754 -111516718 + MIR SINE MIR 14 100 -162 24 32 0 0 chr11 37266794 37266825 -111516647 + AT_rich Low_complexity Low_complexity 1 31 0 760 280 32 0 chr11 37267079 37267268 -111516204 - MIR SINE MIR -57 205 11 1163 22 0 0 chr11 37267346 37267480 -111515992 - AluY SINE Alu -3 308 175 289 256 141 13 chr11 37267522 37267678 -111515794 - L1ME LINE L1 -341 5780 5605 277 222 8 128 chr11 37267755 37267872 -111515600 - MER5A DNA MER1_type -69 120 18 606 298 185 32 chr11 37268030 37268694 -111514778 - L2 LINE L2 -37 3276 2520 212 318 0 16 chr11 37268802 37268865 -111514607 + MIR SINE MIR 56 117 -91 307 293 90 113 chr11 37268929 37269185 -111514287 - L2 LINE L2 -5 3267 3018 184 302 89 49 chr11 37270370 37270557 -111512915 + MIR SINE MIR 31 219 -43 268 331 81 24 chr11 37270705 37270829 -111512643 + MIR3 SINE MIR 63 193 -15 331 347 21 14 chr11 37271023 37271167 -111512305 - MIR3 SINE MIR -35 173 29 276 287 117 0 chr11 37271335 37271429 -111512043 + MIR SINE MIR 29 133 -129 1061 328 47 36 chr11 37273135 37273601 -111509871 + MLT1K LTR MaLR 54 524 -64 392 179 37 52 chr11 37273925 37274029 -111509443 + MER5A DNA MER1_type 4 105 -84 221 301 72 0 chr11 37274217 37274300 -111509172 - MIR SINE MIR -116 146 58 2864 225 45 20 chr11 37274316 37275247 -111508225 + L1ME1 LINE L1 5056 6014 -152 1678 151 29 118 chr11 37275250 37275666 -111507806 - MLT1B LTR MaLR 0 390 12 398 255 7 76 chr11 37275677 37275822 -111507650 + L1ME1 LINE L1 6011 6145 -21 21 0 0 0 chr11 37275831 37275852 -111507620 + AT_rich Low_complexity Low_complexity 1 21 0 564 15 0 0 chr11 37277061 37277126 -111506346 + (CA)n Simple_repeat Simple_repeat 2 66 0 289 120 80 0 chr11 37277358 37277408 -111506064 - MIR SINE MIR -69 193 140 312 133 0 0 chr11 37277414 37277459 -111506013 - MLT1C LTR MaLR -2 465 421 270 301 38 45 chr11 37277463 37277596 -111505876 - MIR SINE MIR -124 138 7 655 268 25 45 chr11 37277875 37278128 -111505344 - MIR SINE MIR 0 262 16 1267 174 39 8 chr11 37279272 37279530 -111503942 + L1MD3 LINE L1 7730 7995 0 690 257 18 12 chr11 37279605 37279776 -111503696 - MIR SINE MIR -46 216 45 284 238 50 79 chr11 37279870 37279971 -111503501 + MER96B DNA MER1_type? 1 98 -319 21 0 0 0 chr11 37279971 37279992 -111503480 + AT_rich Low_complexity Low_complexity 1 21 0 3052 75 13 0 chr11 37280112 37280510 -111502962 - L1PA10 LINE L1 -31 6137 5735 1912 88 0 0 chr11 37280518 37280756 -111502716 - AluY SINE Alu -17 294 57 1501 196 35 26 chr11 37280757 37281099 -111502373 + L1MB3 LINE L1 5463 5807 -376 193 130 0 56 chr11 37281099 37281153 -111502319 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2259 129 13 53 chr11 37281185 37281508 -111501964 + L1MB3 LINE L1 5802 6108 -75 2359 92 3 3 chr11 37281508 37281814 -111501658 - AluSg SINE Alu -4 306 1 2259 129 13 53 chr11 37281814 37281886 -111501586 + L1MB3 LINE L1 6108 6181 -2 481 125 12 0 chr11 37281897 37281977 -111501495 - MER96B DNA MER1_type? -49 368 288 1180 202 0 9 chr11 37281977 37282205 -111501267 + AluJo SINE Alu 84 309 -3 428 223 16 41 chr11 37282205 37282326 -111501146 - MER96B DNA MER1_type? -127 290 173 1845 178 3 0 chr11 37282728 37283020 -111500452 + AluJo SINE Alu 1 293 -19 1180 173 4 31 chr11 37283626 37283851 -111499621 + MER20 DNA MER1_type 1 219 0 287 283 33 11 chr11 37284147 37284239 -111499233 + L2 LINE L2 3179 3272 0 318 281 55 16 chr11 37284393 37284521 -111498951 - L2 LINE L2 -10 3303 3171 251 276 69 0 chr11 37284723 37284810 -111498662 + Charlie7 DNA MER1_type 10 102 -2510 867 270 48 72 chr11 37284858 37285314 -111498158 - LTR16A LTR ERVL -5 445 1 993 248 38 4 chr11 37285709 37285947 -111497525 + MIR SINE MIR 7 252 -10 334 224 171 0 chr11 37286025 37286101 -111497371 - MLT1J LTR MaLR 0 511 423 345 161 0 81 chr11 37286173 37286260 -111497212 - MLT1J LTR MaLR -197 314 235 677 251 51 6 chr11 37287149 37287324 -111496148 - MIR SINE MIR -70 192 10 424 345 82 76 chr11 37287398 37287740 -111495732 - L2 LINE L2 -8 3264 2921 462 36 0 0 chr11 37287859 37287915 -111495557 + (CA)n Simple_repeat Simple_repeat 2 57 0 441 280 0 0 chr11 37288683 37288790 -111494682 + MIR SINE MIR 47 153 -109 2277 99 0 3 chr11 37288873 37289176 -111494296 - AluY SINE Alu -9 302 1 332 296 0 0 chr11 37290297 37290385 -111493087 - L1MC4 LINE L1 -1339 6703 6616 204 67 0 0 chr11 37290385 37290415 -111493057 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 927 249 70 5 chr11 37290795 37291008 -111492464 + Charlie1 DNA MER1_type 13 239 -2522 710 214 14 0 chr11 37290993 37291133 -111492339 + Charlie1 DNA MER1_type 2620 2761 0 * 2422 151 55 19 chr11 37291139 37291556 -111491916 + MSTB1 LTR MaLR 1 432 0 427 301 216 0 chr11 37291652 37291828 -111491644 - MIR SINE MIR -4 258 45 577 310 22 33 chr11 37291836 37292110 -111491362 - L1ME LINE L1 -314 5807 5537 394 286 46 101 chr11 37292292 37292659 -111490813 + MARNA DNA Mariner 31 377 -209 1423 229 74 20 chr11 37292683 37293076 -111490396 + LTR16A1 LTR ERVL 44 457 0 1234 330 74 34 chr11 37293215 37294011 -111489461 + ERVL LTR ERVL 149 976 -4020 1922 340 68 36 chr11 37294185 37294713 -111488759 + ERVL LTR ERVL 1216 1725 -3760 2337 138 19 32 chr11 37294713 37295082 -111488390 + THE1B LTR MaLR 1 364 0 1922 340 68 36 chr11 37295082 37296278 -111487194 + ERVL LTR ERVL 1725 3074 -2411 377 250 0 0 chr11 37296278 37296354 -111487118 + LTR16A1 LTR ERVL 382 457 0 285 353 34 0 chr11 37296382 37296501 -111486971 + MIR SINE MIR 30 152 -56 434 222 105 39 chr11 37297172 37297325 -111486147 + MER103 DNA DNA 3 165 -1 6924 80 12 8 chr11 37297644 37298977 -111484495 + L1PA13 LINE L1 4821 6163 0 666 159 177 0 chr11 37299135 37299248 -111484224 - FLAM_C SINE Alu 0 133 1 2185 87 4 0 chr11 37299393 37299670 -111483802 - AluSg SINE Alu -1 309 32 831 271 40 33 chr11 37299679 37299981 -111483491 + L2 LINE L2 3005 3308 -5 487 298 83 0 chr11 37300004 37300172 -111483300 - MIR SINE MIR -77 185 4 247 244 73 12 chr11 37301914 37301996 -111481476 + MER91C DNA MER1_type 29 115 -25 226 227 0 0 chr11 37302595 37302639 -111480833 - ORSL DNA AcHobo 0 275 232 180 111 0 0 chr11 37303353 37303380 -111480092 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 904 209 34 64 chr11 37303571 37303805 -111479667 - MIR SINE MIR -13 249 23 265 316 29 123 chr11 37303840 37304193 -111479279 - L2 LINE L2 -173 3099 2771 1099 283 52 24 chr11 37304419 37304913 -111478559 + L1ME LINE L1 5283 5800 -321 706 200 0 0 chr11 37304939 37305054 -111478418 - FLAM_C SINE Alu -26 117 3 493 291 18 24 chr11 37306879 37307044 -111476428 - MIR3 SINE MIR -29 179 16 180 0 0 0 chr11 37307185 37307205 -111476267 + (T)n Simple_repeat Simple_repeat 1 20 0 305 211 40 13 chr11 37307224 37307300 -111476172 - MER116 DNA Mariner 0 80 3 2402 46 0 7 chr11 37307332 37307658 -111475814 + AluY SINE Alu 2 325 0 341 277 109 0 chr11 37308063 37308164 -111475308 + L2 LINE L2 3201 3312 -1 216 97 0 0 chr11 37308228 37308259 -111475213 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 946 193 0 0 chr11 37308261 37308406 -111475066 - FRAM SINE Alu -31 145 1 428 275 243 5 chr11 37310301 37310490 -111472982 - MIR SINE MIR -27 235 2 233 328 151 21 chr11 37310502 37310688 -111472784 + L2 LINE L2 1935 2144 -1170 440 363 24 0 chr11 37310744 37310868 -111472604 + L2 LINE L2 3146 3272 0 799 318 42 15 chr11 37311575 37311977 -111471495 - HERV16 LTR ERVL -1576 4078 3666 2897 111 10 0 chr11 37311979 37312374 -111471098 + MER1A DNA MER1_type 131 529 0 1565 307 85 14 chr11 37312374 37312429 -111471043 - HERV16 LTR ERVL -1905 3091 3041 2334 156 4 87 chr11 37312429 37312879 -111470593 - MLT2D LTR ERVL 0 414 2 1565 307 85 14 chr11 37312879 37313596 -111469876 - HERV16 LTR ERVL -1955 3041 2573 924 181 0 12 chr11 37313597 37313757 -111469715 - FRAM SINE Alu -19 157 1 4015 291 85 25 chr11 37313785 37314701 -111468771 - HERV16 LTR ERVL -2469 2527 1668 1981 112 72 4 chr11 37314701 37314978 -111468494 - AluSg SINE Alu -14 296 1 4015 291 85 25 chr11 37314978 37316421 -111467051 - HERV16 LTR ERVL -3328 1668 1 1124 259 93 38 chr11 37316421 37316520 -111466952 - LTR16A LTR ERVL 0 450 358 486 292 0 0 chr11 37316520 37316633 -111466839 - MER81 DNA DNA 0 114 2 1124 259 93 38 chr11 37316633 37316954 -111466518 - LTR16A LTR ERVL -92 358 7 1923 209 86 70 chr11 37317340 37317930 -111465542 + LTR9 LTR ERV1 2 601 -11 4518 165 58 28 chr11 37318155 37318978 -111464494 + MER21B LTR ERV1 5 852 -11 2407 125 9 9 chr11 37319060 37319397 -111464075 + MER1B DNA MER1_type 1 337 0 344 274 58 106 chr11 37320164 37320390 -111463082 - MLT1K LTR MaLR -41 547 333 3327 161 115 58 chr11 37320771 37321251 -111462221 + LTR1B LTR ERV1 1 545 -281 2268 115 66 20 chr11 37321251 37321599 -111461873 + THE1B LTR MaLR 1 364 0 3327 161 115 58 chr11 37321599 37321899 -111461573 + LTR1B LTR ERV1 545 826 0 453 252 49 0 chr11 37323052 37323175 -111460297 - MLT1H LTR MaLR -297 252 124 736 127 9 27 chr11 37323201 37323311 -111460161 - AluSg/x SINE Alu -26 286 179 524 167 10 31 chr11 37323302 37323398 -111460074 - AluSg/x SINE Alu -93 217 124 * 1542 56 0 0 chr11 37323398 37323578 -111459894 - L1PA5 LINE L1 -5 6149 5970 242 260 160 0 chr11 37323830 37323930 -111459542 + MIR SINE MIR 32 147 -115 2026 122 0 14 chr11 37325681 37325990 -111457482 - AluSx SINE Alu 0 305 1 305 224 79 13 chr11 37326892 37326968 -111456504 + MIR SINE MIR 108 188 -74 2204 104 16 3 chr11 37327153 37327460 -111456012 + AluSx SINE Alu 1 311 -1 5054 98 8 5 chr11 37327470 37328135 -111455337 + L1PA14 LINE L1 5493 6159 -2 1751 191 3 0 chr11 37330485 37330783 -111452689 + AluSx SINE Alu 1 299 -13 645 164 23 18 chr11 37331097 37331372 -111452100 + (TA)n Simple_repeat Simple_repeat 1 276 0 430 145 0 0 chr11 37331374 37331436 -111452036 + Tigger3b DNA MER2_type 30 91 -1140 2429 149 14 45 chr11 37331446 37331889 -111451583 - LTR3 LTR ERVK -3 429 1 * 6671 120 60 22 chr11 37331889 37332992 -111450480 + Tigger3b DNA MER2_type 87 1231 0 270 256 167 0 chr11 37334626 37334716 -111448756 + MIR SINE MIR 148 252 -10 21 57 0 0 chr11 37335077 37335112 -111448360 + AT_rich Low_complexity Low_complexity 1 35 0 3039 115 5 2 chr11 37335520 37335938 -111447534 - L1PA15 LINE L1 -2 6163 5745 285 247 26 0 chr11 37340237 37340314 -111443158 - L3b LINE CR1 -227 1356 1278 1508 150 0 68 chr11 37340430 37340696 -111442776 + AluJb SINE Alu 40 287 -25 222 37 0 0 chr11 37341907 37341934 -111441538 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 464 314 81 88 chr11 37341947 37342082 -111441390 + L1MEd LINE L1 3 137 -5982 5248 57 47 1 chr11 37342082 37342767 -111440705 + L1PA7 LINE L1 5428 6143 -11 464 314 81 88 chr11 37342767 37343099 -111440373 + L1MEd LINE L1 137 467 -5652 3311 132 64 56 chr11 37343519 37344158 -111439314 + LTR9B LTR ERV1 1 644 0 51094 138 42 21 chr11 37344158 37344829 -111438643 + HUERS-P3 LTR ERV1 1 656 -8263 2468 48 0 3 chr11 37344829 37345121 -111438351 - AluY SINE Alu 0 311 21 705 67 0 0 chr11 37345121 37345211 -111438261 - AluY SINE Alu -221 90 1 51094 138 42 21 chr11 37345211 37353183 -111430289 + HUERS-P3 LTR ERV1 655 8919 0 618 211 136 11 chr11 37354064 37354329 -111429143 - LTR37A LTR ERV1 -35 391 94 377 295 70 0 chr11 37354602 37354731 -111428741 + MIR3 SINE MIR 31 168 -40 729 277 92 94 chr11 37355290 37355748 -111427724 - L2 LINE L2 -33 3280 2824 1026 302 113 11 chr11 37355759 37356279 -111427193 - L2 LINE L2 -1640 1674 1102 183 314 163 45 chr11 37356297 37356561 -111426911 - L2 LINE L2 -1408 1906 1612 814 214 204 18 chr11 37356697 37356917 -111426555 - MIR SINE MIR 0 262 2 237 346 83 6 chr11 37356941 37357097 -111426375 - L2 LINE L2 -1880 1434 1267 197 313 0 10 chr11 37357209 37357305 -111426167 - L2 LINE L2 -2509 805 711 538 273 79 19 chr11 37357556 37357772 -111425700 + Charlie8 DNA MER1_type 24 252 -2165 512 314 198 51 chr11 37358437 37358494 -111424978 + L2 LINE L2 2231 2278 -994 3281 67 30 5 chr11 37358494 37358927 -111424545 + MLT2A1 LTR ERVL 1 444 0 512 314 198 51 chr11 37358927 37359325 -111424147 + L2 LINE L2 2278 2616 -656 4672 59 101 0 chr11 37359325 37359948 -111423524 - LTR12 LTR ERV1 -2 686 1 512 314 198 51 chr11 37359948 37360402 -111423070 + L2 LINE L2 2616 3268 -4 2299 99 10 0 chr11 37360764 37361068 -111422404 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr11 37362438 37362473 -111420999 + GC_rich Low_complexity Low_complexity 1 35 0 220 272 126 29 chr11 37363899 37364002 -111419470 - MER5A DNA MER1_type -43 146 34 1592 133 41 38 chr11 37364204 37364497 -111418975 + AluJo SINE Alu 8 301 -11 1721 180 82 43 chr11 37364678 37365140 -111418332 - MLT1D LTR MaLR -3 502 23 185 305 0 61 chr11 37365207 37365289 -111418183 - L3 LINE CR1 -199 1378 1302 248 316 120 13 chr11 37365517 37365675 -111417797 - MIR SINE MIR -9 253 79 199 244 12 98 chr11 37365829 37365911 -111417561 - L2 LINE L2 -27 3245 3171 203 337 22 0 chr11 37366101 37366190 -111417282 - L2 LINE L2 -290 2982 2892 325 280 190 41 chr11 37366561 37366950 -111416522 + Charlie8 DNA MER1_type 84 530 -1887 194 0 39 0 chr11 37367641 37367667 -111415805 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 224 281 182 25 chr11 37367924 37368045 -111415427 - MIR SINE MIR -53 209 70 302 314 58 15 chr11 37368081 37368218 -111415254 - MLT1L LTR MaLR -292 323 181 491 198 0 36 chr11 37368368 37368479 -111414993 - MIR SINE MIR 0 262 156 330 26 0 0 chr11 37368906 37368945 -111414527 + (TG)n Simple_repeat Simple_repeat 2 40 0 452 252 257 5 chr11 37370228 37370278 -111413194 - MIR SINE MIR -3 259 223 1873 123 74 0 chr11 37370278 37370562 -111412910 - AluSx SINE Alu -7 305 1 452 252 257 5 chr11 37370562 37370717 -111412755 - MIR SINE MIR -39 223 2 36 0 0 0 chr11 37370729 37370765 -111412707 + AT_rich Low_complexity Low_complexity 1 36 0 283 241 105 68 chr11 37370767 37370929 -111412543 - HAL1 LINE L1 -7 2500 2333 364 242 191 17 chr11 37370981 37371159 -111412313 - HAL1 LINE L1 -311 2196 1988 463 242 50 8 chr11 37371280 37371537 -111411935 - HAL1 LINE L1 -2030 477 96 255 260 24 24 chr11 37371614 37371737 -111411735 - L1ME4a LINE L1 -30 6091 5969 1121 132 72 72 chr11 37371782 37372017 -111411455 + MER46A DNA MER2_type 1 235 -1 21 36 0 0 chr11 37374010 37374038 -111409434 + AT_rich Low_complexity Low_complexity 1 28 0 1495 147 41 0 chr11 37375277 37375522 -111407950 - AluSx SINE Alu -12 300 46 230 56 28 0 chr11 37377016 37377052 -111406420 + (TTG)n Simple_repeat Simple_repeat 2 38 0 351 0 0 0 chr11 37377854 37377893 -111405579 + (TG)n Simple_repeat Simple_repeat 2 40 0 1577 271 70 30 chr11 37378441 37379045 -111404427 + L1MC5 LINE L1 5307 5934 -1874 2849 215 78 73 chr11 37379617 37380613 -111402859 + L1MC5 LINE L1 6625 7630 -331 2018 144 3 7 chr11 37380613 37380919 -111402553 - AluJb SINE Alu -6 306 2 2849 215 78 73 chr11 37380919 37381202 -111402270 + L1MC5 LINE L1 7630 7910 -51 38 0 0 0 chr11 37381202 37381240 -111402232 + AT_rich Low_complexity Low_complexity 1 38 0 296 344 142 24 chr11 37382460 37382672 -111400800 - L2 LINE L2 -162 3110 2874 2179 119 20 0 chr11 37382820 37383123 -111400349 - AluSx SINE Alu -1 311 3 694 238 35 62 chr11 37383454 37383710 -111399762 - L2 LINE L2 -870 2444 2196 670 278 94 7 chr11 37383774 37384051 -111399421 + L1MEd LINE L1 502 802 -5317 608 238 35 56 chr11 37384079 37384398 -111399074 + L1MEd LINE L1 904 1215 -4904 333 0 0 0 chr11 37385510 37385547 -111397925 + (TG)n Simple_repeat Simple_repeat 1 37 0 1350 205 45 24 chr11 37386586 37386961 -111396511 - L1MB8 LINE L1 -2 6176 5794 366 191 15 0 chr11 37387046 37387114 -111396358 + MER3 DNA MER1_type 7 75 -134 218 345 66 56 chr11 37387311 37387508 -111395964 + L2 LINE L2 3069 3308 -5 244 224 129 12 chr11 37388125 37388210 -111395262 + L2 LINE L2 3182 3276 -37 344 294 73 0 chr11 37388486 37388595 -111394877 - MIR SINE MIR -139 123 7 258 259 0 49 chr11 37388828 37388909 -111394563 + CT-rich Low_complexity Low_complexity 6 82 0 251 341 75 62 chr11 37389688 37390072 -111393400 + L2 LINE L2 2829 3217 -55 266 169 45 0 chr11 37390073 37390162 -111393310 + (TA)n Simple_repeat Simple_repeat 2 94 0 2011 125 0 3 chr11 37390172 37390461 -111393011 - AluSq SINE Alu -25 288 1 21 36 0 0 chr11 37390561 37390589 -111392883 + AT_rich Low_complexity Low_complexity 1 28 0 475 231 46 38 chr11 37390733 37391013 -111392459 - L1M4 LINE L1 -3795 2849 2567 24 0 0 0 chr11 37391088 37391112 -111392360 + AT_rich Low_complexity Low_complexity 1 24 0 334 114 100 29 chr11 37391153 37391223 -111392249 - MADE1 DNA Mariner -1 79 5 548 307 79 33 chr11 37391374 37391703 -111391769 - HAL1 LINE L1 -740 1767 1424 427 269 155 12 chr11 37391778 37391939 -111391533 - L1ME3 LINE L1 -2 6168 5985 586 276 63 104 chr11 37391950 37392399 -111391073 - L1M4 LINE L1 -4885 1749 1203 298 285 111 0 chr11 37393308 37393369 -111390103 - L1ME4a LINE L1 -2 6119 6066 216 111 0 0 chr11 37393369 37393405 -111390067 + (CA)n Simple_repeat Simple_repeat 1 36 0 298 285 111 0 chr11 37393405 37393515 -111389957 - L1ME4a LINE L1 -55 6066 5929 605 305 60 40 chr11 37394020 37394269 -111389203 + MIR SINE MIR 3 256 -6 1947 129 41 0 chr11 37395279 37395574 -111387898 - AluSp SINE Alu -2 311 5 22 35 0 0 chr11 37395977 37396006 -111387466 + AT_rich Low_complexity Low_complexity 1 29 0 563 165 165 0 chr11 37396255 37396388 -111387084 + MER114 LTR ERV 1 155 -493 7437 27 0 2 chr11 37396390 37397091 -111386381 - L1PA3 LINE L1 0 6155 5493 2553 36 0 10 chr11 37397091 37397400 -111386072 - AluY SINE Alu -5 306 1 7437 27 0 2 chr11 37397400 37398074 -111385398 - L1PA3 LINE L1 -662 5493 4819 11987 36 1 0 chr11 37398075 37399528 -111383944 + L1P LINE L1 3331 4785 -1361 935 185 82 0 chr11 37399754 37399938 -111383534 + MIR SINE MIR 31 229 -33 840 238 42 0 chr11 37400800 37400989 -111382483 - MIR SINE MIR -26 236 40 291 295 157 19 chr11 37400990 37401200 -111382272 + L3 LINE CR1 703 941 -636 198 200 113 62 chr11 37403151 37403231 -111380241 + L3 LINE CR1 1257 1340 -237 309 302 12 0 chr11 37403793 37403879 -111379593 - L2 LINE L2 -1 3271 3185 2074 103 7 7 chr11 37404361 37404642 -111378830 - AluSp SINE Alu -32 281 1 336 227 0 0 chr11 37404961 37405027 -111378445 + Charlie8 DNA MER1_type 123 188 -2229 26 0 0 0 chr11 37405218 37405244 -111378228 + AT_rich Low_complexity Low_complexity 1 26 0 4174 144 82 40 chr11 37405253 37406111 -111377361 + L1MB3 LINE L1 5282 6175 -8 22 35 0 0 chr11 37406351 37406380 -111377092 + AT_rich Low_complexity Low_complexity 1 29 0 332 297 47 58 chr11 37406908 37407289 -111376183 - L1ME LINE L1 -1239 5702 5326 262 262 47 47 chr11 37407350 37407457 -111376015 - L2 LINE L2 -80 3233 3127 1584 169 6 49 chr11 37409295 37409621 -111373851 - AluJo SINE Alu 0 312 1 2136 127 10 0 chr11 37410365 37410664 -111372808 + AluSx SINE Alu 3 304 -8 2162 212 43 69 chr11 37411053 37411722 -111371750 - MLT1E1 LTR MaLR 0 654 3 2340 115 0 0 chr11 37412881 37413193 -111370279 - AluSx SINE Alu 0 312 1 1591 183 38 7 chr11 37414029 37414319 -111369153 + AluJo SINE Alu 1 299 -13 878 200 42 50 chr11 37414733 37414973 -111368499 - L1M4 LINE L1 -3220 2926 2689 1907 169 135 17 chr11 37414973 37415329 -111368143 + MER47B DNA MER2_type 20 417 -1 2212 108 7 10 chr11 37415379 37415686 -111367786 - AluSg SINE Alu -4 306 1 222 300 14 0 chr11 37415774 37415844 -111367628 + (TATG)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chr11 37416388 37416411 -111367061 + AT_rich Low_complexity Low_complexity 1 23 0 1141 177 59 5 chr11 37416694 37416914 -111366558 + MER46A DNA MER2_type 1 232 -4 5174 251 116 24 chr11 37417298 37418437 -111365035 - L1ME LINE L1 -1944 4997 3964 2007 146 0 3 chr11 37418437 37418739 -111364733 - AluSx SINE Alu -10 302 2 5174 251 116 24 chr11 37418739 37420051 -111363421 - L1ME LINE L1 -2977 3964 2220 3529 163 44 30 chr11 37420051 37420685 -111362787 - L1MB3 LINE L1 0 6183 5536 1448 178 73 4 chr11 37420685 37420960 -111362512 + AluJo SINE Alu 1 294 -18 3529 163 44 30 chr11 37420960 37421047 -111362425 - L1MB3 LINE L1 -647 5536 5452 5174 251 116 24 chr11 37421047 37421685 -111361787 - L1ME LINE L1 -4721 2220 1642 953 216 4 17 chr11 37421686 37421918 -111361554 - L1ME LINE L1 -6178 245 17 548 273 252 11 chr11 37422476 37422762 -111360710 - L2 LINE L2 -963 2351 1997 354 226 37 63 chr11 37423608 37423798 -111359674 - Charlie7 DNA MER1_type -11 2601 2417 206 241 0 37 chr11 37424362 37424416 -111359056 - MIR SINE MIR -59 149 98 1784 261 99 46 chr11 37424436 37425424 -111358048 - L2 LINE L2 -50 3263 2228 304 53 0 0 chr11 37425571 37425609 -111357863 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 21 57 0 0 chr11 37425687 37425722 -111357750 + AT_rich Low_complexity Low_complexity 1 35 0 396 344 50 55 chr11 37425899 37426300 -111357172 - L1 LINE L1 -2500 3646 3248 355 206 0 0 chr11 37426412 37426485 -111356987 - LTR30 LTR ERV1 -98 624 552 7444 35 0 0 chr11 37427040 37428370 -111355102 - L1PA4 LINE L1 0 6155 4827 14216 43 0 2 chr11 37428370 37430138 -111353334 + L1PA4 LINE L1 3046 4812 -1334 2088 118 0 0 chr11 37431202 37431491 -111351981 + AluSc SINE Alu 1 289 -20 1973 153 0 10 chr11 37432064 37432372 -111351100 + AluSx SINE Alu 1 305 -7 26 30 0 0 chr11 37432590 37432623 -111350849 + AT_rich Low_complexity Low_complexity 1 33 0 446 310 107 15 chr11 37432955 37433152 -111350320 - MIR SINE MIR -25 237 23 285 29 0 0 chr11 37433771 37433805 -111349667 + (TG)n Simple_repeat Simple_repeat 2 35 0 518 284 89 36 chr11 37434292 37434517 -111348955 - MIR SINE MIR -24 238 2 1779 127 76 10 chr11 37434794 37435021 -111348451 + MER44D DNA MER2_type 5 215 -2276 1254 167 173 13 chr11 37435021 37435321 -111348151 - MER7A DNA MER2_type 0 346 1 1779 127 76 10 chr11 37435321 37435407 -111348065 + MER44D DNA MER2_type 215 609 0 294 377 140 3 chr11 37435654 37435962 -111347510 + L2 LINE L2 2955 3304 -9 284 289 53 20 chr11 37437229 37437381 -111346091 + L1ME LINE L1 5512 5668 -453 28 0 0 0 chr11 37437509 37437537 -111345935 + AT_rich Low_complexity Low_complexity 1 28 0 2076 132 10 3 chr11 37437668 37437978 -111345494 + AluSx SINE Alu 1 312 0 1473 231 120 10 chr11 37438651 37439158 -111344314 - L1ME3A LINE L1 -250 5920 5358 1777 251 107 23 chr11 37439218 37440093 -111343379 - L1ME3A LINE L1 -867 5279 4298 3096 131 64 55 chr11 37440093 37440688 -111342784 - MER7C DNA MER2_type -1 601 2 1777 251 107 23 chr11 37440688 37440871 -111342601 - L1ME3A LINE L1 -1848 4298 4132 1788 155 0 24 chr11 37442792 37443089 -111340383 - AluJb SINE Alu -22 290 1 23 33 0 0 chr11 37443948 37443978 -111339494 + AT_rich Low_complexity Low_complexity 1 30 0 253 294 130 4 chr11 37445453 37445561 -111337911 + MIR SINE MIR 30 149 -59 195 309 95 12 chr11 37445709 37445793 -111337679 - MIR SINE MIR -150 112 22 225 162 0 0 chr11 37446531 37446568 -111336904 - LTR41 LTR ERVL -736 37 1 2148 87 56 0 chr11 37448122 37448408 -111335064 - AluSg SINE Alu -6 304 3 2195 119 3 7 chr11 37448418 37448728 -111334744 - AluJo SINE Alu -3 309 1 657 243 41 82 chr11 37448900 37449143 -111334329 - MIR SINE MIR -1 261 29 3427 45 0 0 chr11 37450671 37451089 -111332383 - L1PA7 LINE L1 -11 6143 5726 3741 183 75 14 chr11 37451645 37452521 -111330951 + MER63C DNA MER1_type 1 930 0 22 0 0 0 chr11 37453297 37453319 -111330153 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 42 123 chr11 37454868 37454924 -111328548 + L2 LINE L2 2997 3056 -216 2061 116 3 17 chr11 37454924 37455218 -111328254 - AluSx SINE Alu -22 290 1 341 298 42 123 chr11 37455218 37455446 -111328026 + L2 LINE L2 3056 3258 -14 649 123 175 0 chr11 37456675 37456789 -111326683 + AluJo SINE Alu 1 134 -178 603 213 58 32 chr11 37457219 37457374 -111326098 + MIR SINE MIR 55 213 -49 329 369 19 6 chr11 37457447 37457604 -111325868 - MIR3 SINE MIR -9 199 41 1588 176 39 39 chr11 37457979 37458285 -111325187 + AluJb SINE Alu 5 310 -2 228 135 0 0 chr11 37459002 37459039 -111324433 + (A)n Simple_repeat Simple_repeat 1 37 0 2148 123 0 22 chr11 37459041 37459358 -111324114 + AluSx SINE Alu 1 310 -2 324 287 21 0 chr11 37460924 37461073 -111322399 + (TATG)n Simple_repeat Simple_repeat 1 152 0 188 227 0 0 chr11 37461078 37461122 -111322350 - MER5B DNA MER1_type -131 47 4 484 283 161 5 chr11 37461582 37461787 -111321685 - MIR SINE MIR -19 243 7 2331 108 0 9 chr11 37462593 37462908 -111320564 + AluSx SINE Alu 1 312 0 240 268 73 32 chr11 37463376 37463596 -111319876 + L1ME4a LINE L1 5893 6121 0 199 271 290 0 chr11 37464128 37464235 -111319237 + MER5B DNA MER1_type 17 154 -24 947 146 50 9 chr11 37464755 37464975 -111318497 - MER45R DNA AcHobo -106 1475 1247 1675 150 13 22 chr11 37465008 37465322 -111318150 - L1MC1 LINE L1 -23 6310 6000 1339 227 99 42 chr11 37465461 37465672 -111317800 + MER114 LTR ERV 1 199 -449 1548 109 34 44 chr11 37465672 37465965 -111317507 - L1MA1 LINE L1 0 6302 6013 1339 227 99 42 chr11 37465965 37466239 -111317233 + MER114 LTR ERV 199 531 -117 1907 127 0 0 chr11 37466239 37466499 -111316973 - AluSx SINE Alu -15 297 38 1339 227 99 42 chr11 37466499 37466625 -111316847 + MER114 LTR ERV 531 648 0 28278 108 11 15 chr11 37468021 37472536 -111310936 + L1PA7 LINE L1 3 4503 -1643 6735 75 1 1 chr11 37472929 37474586 -111308886 + L1PA7 LINE L1 4512 6154 0 1726 124 23 101 chr11 37474834 37475222 -111308250 + MLT1A1 LTR MaLR 8 365 0 1642 174 11 7 chr11 37475476 37475758 -111307714 - AluJo SINE Alu -25 287 5 572 273 23 0 chr11 37475834 37475966 -111307506 - MIR SINE MIR -96 166 32 454 202 91 0 chr11 37476923 37477022 -111306450 + MIR SINE MIR 84 191 -71 785 244 109 61 chr11 37477255 37477648 -111305824 - MLT1H LTR MaLR -128 421 10 266 276 175 24 chr11 37477916 37478088 -111305384 - MIR SINE MIR -46 216 16 361 330 173 17 chr11 37478683 37478862 -111304610 - MIR SINE MIR -6 256 50 1447 151 7 53 chr11 37479161 37479460 -111304012 + AluSx SINE Alu 11 295 -17 638 323 44 8 chr11 37479472 37479720 -111303752 - MIR SINE MIR -5 257 1 22 0 0 0 chr11 37480609 37480631 -111302841 + AT_rich Low_complexity Low_complexity 1 22 0 1788 19 0 0 chr11 37480645 37480855 -111302617 + L1P1 LINE L1 5557 5766 -389 2744 82 3 0 chr11 37482706 37483060 -111300412 - THE1A LTR MaLR 0 355 1 11468 98 8 1 chr11 37483060 37484630 -111298842 - THE1A-int LTR MaLR 0 1580 1 2760 79 6 0 chr11 37484630 37484983 -111298489 - THE1A LTR MaLR 0 355 1 184 229 0 0 chr11 37485518 37485553 -111297919 + L2 LINE L2 3266 3300 -13 240 35 0 0 chr11 37485557 37485586 -111297886 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1987 245 43 49 chr11 37485941 37486737 -111296735 - L1ME3A LINE L1 -10 6160 5282 727 205 0 0 chr11 37486737 37486854 -111296618 - FLAM_C SINE Alu -14 119 3 1987 245 43 49 chr11 37486854 37487473 -111295999 - L1ME3A LINE L1 -888 5282 4661 1999 144 0 29 chr11 37487506 37487812 -111295660 - AluSq SINE Alu -15 298 2 403 255 19 0 chr11 37488086 37488192 -111295280 - MIR SINE MIR 0 262 155 511 271 96 11 chr11 37488285 37488473 -111294999 - MIR3 SINE MIR -4 204 1 258 310 74 25 chr11 37488502 37488744 -111294728 + L2 LINE L2 1739 1992 -1322 309 0 0 0 chr11 37488744 37488784 -111294688 - L1PA6 LINE L1 -3 6151 6112 1364 166 36 0 chr11 37488784 37489031 -111294441 - THE1B LTR MaLR -105 259 4 250 306 83 0 chr11 37489034 37489106 -111294366 + L2 LINE L2 2242 2319 -995 349 217 36 72 chr11 37489647 37489785 -111293687 + L2 LINE L2 2306 2438 -876 1942 153 3 0 chr11 37489903 37490190 -111293282 - AluJb SINE Alu -12 300 13 703 257 72 29 chr11 37490251 37490558 -111292914 + L2 LINE L2 2994 3313 0 3149 185 69 37 chr11 37490760 37491488 -111291984 - L1MD1 LINE L1 0 6242 5492 2212 127 68 11 chr11 37491870 37492225 -111291247 - THE1C LTR MaLR 0 375 1 782 260 77 4 chr11 37492615 37492850 -111290622 - MIR SINE MIR -5 257 6 1103 120 19 0 chr11 37492885 37493043 -111290429 - MER1A DNA MER1_type 0 533 373 9032 27 16 0 chr11 37493043 37494105 -111289367 - L1P LINE L1 -1768 4378 3300 2207 141 0 0 chr11 37494105 37494418 -111289054 - MER1A DNA MER1_type -132 397 85 274 304 78 59 chr11 37494685 37494889 -111288583 - MIR SINE MIR -6 256 49 257 405 47 10 chr11 37495016 37495317 -111288155 + L2 LINE L2 2365 2676 -638 241 259 17 0 chr11 37495591 37495649 -111287823 + MIR SINE MIR 204 262 0 370 258 158 0 chr11 37496291 37496411 -111287061 + L1ME LINE L1 5680 5818 -303 820 167 39 6 chr11 37496806 37496986 -111286486 + MER53 DNA DNA 2 187 -2 472 335 22 54 chr11 37497846 37498162 -111285310 + LTR16B LTR ERVL 9 314 -150 1778 181 57 7 chr11 37498182 37498527 -111284945 + MLT1A1 LTR MaLR 13 446 0 424 236 152 11 chr11 37499654 37499832 -111283640 - MER113 DNA MER1_type? -5 516 314 1730 151 0 58 chr11 37499851 37500163 -111283309 - AluJb SINE Alu -18 294 1 537 282 82 86 chr11 37500232 37500663 -111282809 + L2 LINE L2 2667 3151 -162 4010 28 2 0 chr11 37500663 37501125 -111282347 + L1PA5 LINE L1 5692 6154 0 537 282 82 86 chr11 37501125 37501288 -111282184 + L2 LINE L2 3151 3313 0 1916 108 0 12 chr11 37501417 37501704 -111281768 + AluSx SINE Alu 40 312 0 230 280 0 0 chr11 37502875 37502925 -111280547 - MIR SINE MIR -61 147 98 1242 246 132 62 chr11 37504089 37504649 -111278823 + MER45C DNA AcHobo 1 599 -354 239 163 20 20 chr11 37504672 37504721 -111278751 + MER45C DNA AcHobo 905 953 0 194 309 18 0 chr11 37505736 37505791 -111277681 - L2 LINE L2 -10 3262 3207 217 314 12 12 chr11 37505903 37505989 -111277483 + MIR SINE MIR 58 143 -65 252 128 26 0 chr11 37506118 37506157 -111277315 - MLT1C LTR MaLR -2 465 426 1162 29 50 0 chr11 37506158 37506297 -111277175 + AluY SINE Alu 151 296 -15 2390 169 51 0 chr11 37506297 37506712 -111276760 - MLT1C LTR MaLR -31 436 1 299 247 14 0 chr11 37506762 37506835 -111276637 + MER117 DNA MER1_type 5 78 -119 892 250 177 23 chr11 37507891 37508191 -111275281 + MLT1H LTR MaLR 195 540 -9 1820 176 0 7 chr11 37508626 37508915 -111274557 + AluJo SINE Alu 1 287 -25 365 258 91 15 chr11 37509222 37509354 -111274118 + MER117 DNA MER1_type 11 152 -45 570 265 95 16 chr11 37510110 37510299 -111273173 + MIR SINE MIR 47 250 -12 927 148 6 40 chr11 37510396 37510572 -111272900 + MLT1A1 LTR MaLR 1 170 -195 36524 75 7 10 chr11 37510574 37516199 -111267273 + L1PA6 LINE L1 459 6067 -87 1132 65 13 7 chr11 37516305 37516459 -111267013 + L1PA10 LINE L1 6010 6164 -4 283 247 144 31 chr11 37517007 37517104 -111266368 + MIR SINE MIR 96 203 -59 559 346 90 45 chr11 37517416 37517927 -111265545 - LTR67 LTR ERVL -5 552 19 2323 85 3 0 chr11 37518894 37519187 -111264285 + AluSp SINE Alu 16 309 -4 388 246 110 8 chr11 37520140 37520258 -111263214 + MIR3 SINE MIR 51 180 -28 255 368 145 5 chr11 37520416 37520676 -111262796 + L2 LINE L2 2721 3017 -296 681 198 12 76 chr11 37520743 37520915 -111262557 + MER58B DNA MER1_type 181 341 0 289 314 64 29 chr11 37520931 37521103 -111262369 + L2 LINE L2 3118 3295 -18 1302 260 131 13 chr11 37522097 37522555 -111260917 + LTR33 LTR ERVL 3 514 -7 1719 307 37 31 chr11 37523198 37523905 -111259567 + ERVL LTR ERVL 3914 4624 -1140 1870 218 111 20 chr11 37523907 37524434 -111259038 - MLT1F1 LTR MaLR 0 567 2 1194 310 85 34 chr11 37524451 37525158 -111258314 + ERVL LTR ERVL 4638 5380 -384 724 278 142 0 chr11 37525349 37525561 -111257911 + LTR33 LTR ERVL 16 257 -264 268 305 54 36 chr11 37525637 37525804 -111257668 - LTR16C LTR ERVL -113 378 209 338 293 88 7 chr11 37526113 37526260 -111257212 + LTR33 LTR ERVL 361 519 -2 21 0 0 0 chr11 37526476 37526497 -111256975 + AT_rich Low_complexity Low_complexity 1 21 0 2015 166 27 27 chr11 37526502 37526869 -111256603 + THE1C LTR MaLR 1 367 -8 361 239 0 0 chr11 37526924 37526995 -111256477 + LTR67 LTR ERVL 3 73 -484 2724 90 14 11 chr11 37527014 37527382 -111256090 + THE1C LTR MaLR 1 369 -6 4735 137 69 69 chr11 37527389 37528290 -111255182 + THE1C-int LTR MaLR 1 901 -679 597 283 120 37 chr11 37528820 37529202 -111254270 - MLT1J LTR MaLR -97 414 1 251 237 175 26 chr11 37529583 37529697 -111253775 - MIR3 SINE MIR -63 145 15 211 191 0 21 chr11 37530599 37530646 -111252826 + L2 LINE L2 3219 3264 -8 588 235 118 38 chr11 37530753 37530991 -111252481 - MIR SINE MIR -2 260 4 22 0 0 0 chr11 37531253 37531275 -111252197 + GC_rich Low_complexity Low_complexity 1 22 0 3470 163 44 16 chr11 37531863 37532563 -111250909 + L1MA8 LINE L1 5569 6288 -3 409 238 98 8 chr11 37532665 37532787 -111250685 + MIR SINE MIR 34 166 -96 180 0 0 0 chr11 37533371 37533391 -111250081 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1066 258 16 0 chr11 37535647 37535899 -111247573 - MIR SINE MIR 0 262 7 2476 64 0 7 chr11 37536979 37537276 -111246196 + AluSp SINE Alu 1 295 -18 181 321 0 0 chr11 37537889 37537942 -111245530 + L2 LINE L2 3247 3299 -14 422 321 0 15 chr11 37538727 37538861 -111244611 + MIR3 SINE MIR 66 197 -11 181 204 56 0 chr11 37539120 37539174 -111244298 - MIR SINE MIR -127 135 79 183 306 0 12 chr11 37539962 37540047 -111243425 + MIR SINE MIR 66 149 -113 207 263 81 50 chr11 37540080 37540179 -111243293 - L2 LINE L2 -57 3256 3155 484 226 95 22 chr11 37540662 37540799 -111242673 + MER117 DNA MER1_type 6 152 -45 377 271 152 13 chr11 37542204 37542355 -111241117 - MIR3 SINE MIR -18 190 19 453 249 65 27 chr11 37542716 37542901 -111240571 - L2 LINE L2 -5 3308 3117 909 249 123 47 chr11 37544018 37544440 -111239032 - MLT1L LTR MaLR -69 546 93 1367 185 14 25 chr11 37545930 37546206 -111237266 + AluJo SINE Alu 10 282 -30 341 287 37 9 chr11 37546233 37546341 -111237131 + L2 LINE L2 3180 3290 -23 680 126 72 11 chr11 37546470 37546736 -111236736 + (TCTA)n Simple_repeat Simple_repeat 1 282 0 562 318 21 0 chr11 37547549 37547738 -111235734 + MIR SINE MIR 54 246 -16 268 318 28 9 chr11 37548888 37548995 -111234477 - MIR SINE MIR -65 143 35 356 366 11 11 chr11 37549757 37549932 -111233540 - MIR3 SINE MIR -24 184 10 224 57 0 29 chr11 37550076 37550111 -111233361 + (TC)n Simple_repeat Simple_repeat 1 34 0 369 283 87 40 chr11 37550372 37550545 -111232927 - MIR SINE MIR -35 227 47 253 294 102 34 chr11 37551133 37551310 -111232162 + L2 LINE L2 3084 3272 -41 201 159 0 0 chr11 37552039 37552083 -111231389 + (CA)n Simple_repeat Simple_repeat 1 44 0 490 253 7 39 chr11 37553086 37553240 -111230232 + MIR SINE MIR 107 255 -7 197 329 12 47 chr11 37554906 37554991 -111228481 - MIR SINE MIR -94 114 33 207 25 75 0 chr11 37556440 37556480 -111226992 + T-rich Low_complexity Low_complexity 2 44 0 569 249 94 20 chr11 37557474 37557675 -111225797 + MIR SINE MIR 37 252 -10 338 259 102 9 chr11 37558341 37558449 -111225023 - L2 LINE L2 0 3272 3155 276 77 0 0 chr11 37558585 37558624 -111224848 + (CA)n Simple_repeat Simple_repeat 2 40 0 646 237 45 0 chr11 37559058 37559214 -111224258 + MIR SINE MIR 51 213 -49 375 322 68 17 chr11 37559242 37559419 -111224053 - MIR SINE MIR -26 236 51 698 197 0 66 chr11 37560092 37560275 -111223197 + MIR SINE MIR 84 254 -8 7660 113 1 28 chr11 37560766 37561914 -111221558 - HSMAR2 DNA Mariner -1 1301 185 388 242 0 30 chr11 37562015 37562114 -111221358 - L2 LINE L2 -36 3277 3182 1494 252 44 25 chr11 37562131 37562604 -111220868 + MER74B LTR ERVL 67 548 -74 1841 228 157 13 chr11 37562749 37563536 -111219936 - L2 LINE L2 -239 3074 2151 292 274 36 0 chr11 37565189 37565273 -111218199 - L2 LINE L2 -2 3270 3184 30 69 0 0 chr11 37567413 37567471 -111216001 + AT_rich Low_complexity Low_complexity 1 58 0 4208 103 12 8 chr11 37567471 37568073 -111215399 - L1PA13 LINE L1 -9 6154 5551 719 203 8 0 chr11 37568267 37568395 -111215077 + FLAM_C SINE Alu 5 133 0 5975 207 50 46 chr11 37568504 37569955 -111213517 + L1ME1 LINE L1 2 1457 -5083 * 8149 220 44 58 chr11 37569932 37570813 -111212659 + L1ME1 LINE L1 2885 3777 -2951 2301 101 0 3 chr11 37570813 37571111 -111212361 + AluY SINE Alu 1 297 -14 8149 220 44 58 chr11 37571111 37572119 -111211353 + L1ME1 LINE L1 3777 4798 -1930 1637 151 42 45 chr11 37572119 37572430 -111211042 + AluJb SINE Alu 1 310 -2 8149 220 44 58 chr11 37572430 37573036 -111210436 + L1ME1 LINE L1 4798 5411 -1317 291 28 0 0 chr11 37573036 37573072 -111210400 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 8149 220 44 58 chr11 37573072 37573541 -111209931 + L1ME1 LINE L1 5411 5885 -843 1939 159 35 40 chr11 37573541 37573918 -111209554 - THE1C LTR MaLR 0 375 1 8149 220 44 58 chr11 37573918 37574687 -111208785 + L1ME1 LINE L1 5885 6725 -3 23 33 0 0 chr11 37574979 37575009 -111208463 + AT_rich Low_complexity Low_complexity 1 30 0 2209 46 0 0 chr11 37575508 37575770 -111207702 - L1PA5 LINE L1 -4 6150 5889 606 284 96 19 chr11 37576313 37576521 -111206951 + MER58A DNA MER1_type 1 224 0 300 323 10 0 chr11 37577057 37577153 -111206319 + (ATGGTG)n Simple_repeat Simple_repeat 2 98 0 34 0 0 0 chr11 37577414 37577448 -111206024 + AT_rich Low_complexity Low_complexity 1 34 0 180 364 58 8 chr11 37578443 37578564 -111204908 - L2 LINE L2 0 3272 3146 * 187 369 35 0 chr11 37578556 37578697 -111204775 - MIR SINE MIR -15 247 102 490 227 0 15 chr11 37579949 37580081 -111203391 + L1MB4 LINE L1 6047 6176 -4 537 225 53 137 chr11 37580311 37580596 -111202876 - MIR SINE MIR 0 262 2 320 321 14 21 chr11 37581309 37581449 -111202023 + (TGGA)n Simple_repeat Simple_repeat 4 142 0 385 313 7 14 chr11 37581481 37581628 -111201844 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 198 143 0 0 chr11 37581655 37581690 -111201782 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1962 148 7 3 chr11 37584013 37584304 -111199168 + AluSc SINE Alu 1 292 -17 2458 161 36 13 chr11 37584546 37585017 -111198455 + L1MA8 LINE L1 5807 6288 -3 666 274 80 5 chr11 37585119 37585331 -111198141 + MIR SINE MIR 34 261 -1 481 239 17 8 chr11 37585326 37585443 -111198029 - MIR SINE MIR -106 156 39 * 1545 217 18 15 chr11 37585662 37585999 -111197473 - MER58B DNA MER1_type -3 338 1 225 244 70 35 chr11 37586043 37586129 -111197343 - MIR SINE MIR -118 144 56 339 269 181 22 chr11 37587065 37587292 -111196180 - L1ME4a LINE L1 -16 6105 5843 383 293 105 0 chr11 37587529 37587662 -111195810 + MIR3 SINE MIR 53 199 -9 376 374 79 0 chr11 37588387 37588614 -111194858 - MIR SINE MIR -4 258 14 517 267 114 14 chr11 37588895 37589105 -111194367 + MIR SINE MIR 32 262 0 372 272 26 18 chr11 37589105 37589219 -111194253 + MIR SINE MIR 11 125 -137 338 258 125 55 chr11 37589989 37590343 -111193129 + MLT1L LTR MaLR 176 577 -11 1244 204 0 5 chr11 37590846 37591067 -111192405 + AluJo SINE Alu 5 224 -88 277 120 40 0 chr11 37591067 37591117 -111192355 + Alu SINE Alu 247 300 0 186 105 0 53 chr11 37591117 37591155 -111192317 + (GAA)n Simple_repeat Simple_repeat 1 180 0 827 248 56 67 chr11 37591684 37592043 -111191429 + MLT1J2 LTR MaLR 94 448 -2 314 269 14 97 chr11 37592407 37592552 -111190920 - L1ME4a LINE L1 -2210 5598 5466 3978 133 28 49 chr11 37592571 37593325 -111190147 - L1MB2 LINE L1 -8 6163 5426 238 226 262 60 chr11 37593547 37593631 -111189841 - MIR SINE MIR -52 210 110 539 275 107 47 chr11 37593862 37594200 -111189272 + MLT1L LTR MaLR 249 606 -9 204 235 20 0 chr11 37595385 37595436 -111188036 + (TAG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr11 37595461 37595482 -111187990 + AT_rich Low_complexity Low_complexity 1 21 0 653 262 20 0 chr11 37595484 37595633 -111187839 - MIR SINE MIR -77 185 34 3507 101 2 4 chr11 37595901 37596404 -111187068 + L1PA8 LINE L1 5667 6168 -4 294 287 0 11 chr11 37597270 37597357 -111186115 + MIR SINE MIR 46 131 -131 243 31 0 0 chr11 37597734 37597766 -111185706 - MADE1 DNA Mariner -48 32 1 226 314 25 16 chr11 37597952 37598073 -111185399 + GA-rich Low_complexity Low_complexity 2 123 0 288 0 0 0 chr11 37598960 37598992 -111184480 + (TG)n Simple_repeat Simple_repeat 1 32 0 929 143 39 73 chr11 37599108 37599367 -111184105 + L1MC5 LINE L1 7668 7917 -44 2342 93 0 3 chr11 37599381 37599681 -111183791 + AluSp SINE Alu 1 299 -14 867 239 29 17 chr11 37600151 37600389 -111183083 + MLT1J1 LTR MaLR 37 277 -169 2516 54 3 19 chr11 37600392 37600708 -111182764 + AluY SINE Alu 1 311 0 204 283 17 0 chr11 37601072 37601132 -111182340 - MIR SINE MIR -128 134 74 2331 100 0 10 chr11 37601368 37601678 -111181794 - AluY SINE Alu -4 307 1 432 280 85 74 chr11 37601805 37602169 -111181303 + MLT1I LTR MaLR 42 409 0 424 331 22 0 chr11 37602189 37602367 -111181105 - MER117 DNA MER1_type 0 197 16 750 312 15 0 chr11 37602378 37602580 -111180892 + L2 LINE L2 2753 2957 -357 273 315 11 11 chr11 37602693 37602782 -111180690 + L2 LINE L2 3224 3312 -1 227 314 116 16 chr11 37603736 37603857 -111179615 + MIR SINE MIR 124 256 -6 2033 144 0 0 chr11 37604124 37604437 -111179035 + MER1A DNA MER1_type 85 397 -132 9052 54 0 1 chr11 37604437 37605642 -111177830 + L1P LINE L1 3300 4503 -1643 558 96 48 10 chr11 37606030 37606134 -111177338 + L1P LINE L1 4512 4619 -1527 205 289 29 48 chr11 37606553 37606657 -111176815 + MIR SINE MIR 52 153 -109 441 265 152 13 chr11 37607169 37607320 -111176152 - MIR3 SINE MIR -18 190 19 480 269 113 35 chr11 37607681 37607937 -111175535 - L2 LINE L2 -5 3308 3033 402 21 0 0 chr11 37609570 37609617 -111173855 + (CA)n Simple_repeat Simple_repeat 2 48 0 289 120 80 0 chr11 37609849 37609899 -111173573 - MIR SINE MIR -69 193 140 288 133 0 0 chr11 37609905 37609950 -111173522 - MLT1C LTR MaLR -2 465 421 270 301 38 45 chr11 37609954 37610087 -111173385 - MIR SINE MIR -124 138 7 500 244 32 74 chr11 37610366 37610615 -111172857 - MIR SINE MIR 0 262 28 1175 175 39 4 chr11 37611772 37612029 -111171443 + L1MD3 LINE L1 7730 7995 0 706 257 18 12 chr11 37612104 37612275 -111171197 - MIR SINE MIR -46 216 45 242 246 0 43 chr11 37612369 37612438 -111171034 + MER96B DNA MER1_type? 1 66 -351 30 0 0 0 chr11 37612461 37612491 -111170981 + AT_rich Low_complexity Low_complexity 1 30 0 2691 80 15 8 chr11 37612611 37613011 -111170461 - L1PA10 LINE L1 -31 6137 5735 1354 92 0 0 chr11 37613019 37613192 -111170280 - AluY SINE Alu -17 294 122 333 0 0 0 chr11 37614231 37614268 -111169204 + (TG)n Simple_repeat Simple_repeat 1 37 0 1350 205 45 24 chr11 37615307 37615682 -111167790 - L1MB8 LINE L1 -2 6176 5794 341 191 15 0 chr11 37615767 37615835 -111167637 + MER3 DNA MER1_type 7 75 -134 216 345 66 56 chr11 37616036 37616233 -111167239 + L2 LINE L2 3069 3267 -5 243 224 129 12 chr11 37616850 37616935 -111166537 + L2 LINE L2 3182 3276 -37 339 200 71 0 chr11 37617211 37617281 -111166191 - MIR SINE MIR -139 123 49 255 250 25 25 chr11 37617552 37617632 -111165840 + CT-rich Low_complexity Low_complexity 1 80 0 273 344 75 62 chr11 37618414 37618798 -111164674 + L2 LINE L2 2829 3217 -55 245 180 45 0 chr11 37618799 37618888 -111164584 + (TA)n Simple_repeat Simple_repeat 1 93 0 2055 125 0 3 chr11 37618898 37619187 -111164285 - AluSq SINE Alu -25 288 1 21 36 0 0 chr11 37619287 37619315 -111164157 + AT_rich Low_complexity Low_complexity 1 28 0 397 231 46 38 chr11 37619459 37619739 -111163733 - L1M4 LINE L1 -3795 2849 2567 24 0 0 0 chr11 37619814 37619838 -111163634 + AT_rich Low_complexity Low_complexity 1 24 0 325 114 100 29 chr11 37619879 37619949 -111163523 - MADE1 DNA Mariner -1 79 5 435 307 79 33 chr11 37620100 37620429 -111163043 - HAL1 LINE L1 -740 1767 1424 387 271 8 8 chr11 37620543 37620665 -111162807 - L1ME3 LINE L1 -56 6106 5985 579 274 63 104 chr11 37620676 37621125 -111162347 - L1M4 LINE L1 -4885 1749 1203 235 291 111 0 chr11 37622034 37622095 -111161377 - L1ME4a LINE L1 -2 6119 6066 216 111 0 0 chr11 37622095 37622131 -111161341 + (CA)n Simple_repeat Simple_repeat 1 36 0 235 291 111 0 chr11 37622131 37622241 -111161231 - L1ME4a LINE L1 -55 6066 5929 597 305 60 40 chr11 37622746 37622995 -111160477 + MIR SINE MIR 3 256 -6 2004 129 41 0 chr11 37624005 37624300 -111159172 - AluSp SINE Alu -2 311 5 22 35 0 0 chr11 37624703 37624732 -111158740 + AT_rich Low_complexity Low_complexity 1 29 0 517 165 165 0 chr11 37624981 37625114 -111158358 + MER114 LTR ERV 1 155 -493 7479 26 0 2 chr11 37625116 37625817 -111157655 - L1PA3 LINE L1 0 6155 5493 2595 36 0 10 chr11 37625817 37626126 -111157346 - AluY SINE Alu -5 306 1 7479 26 0 2 chr11 37626126 37626800 -111156672 - L1PA3 LINE L1 -662 5493 4819 11492 36 1 0 chr11 37626801 37628254 -111155218 + L1P LINE L1 3331 4785 -1361 935 185 82 0 chr11 37628480 37628664 -111154808 + MIR SINE MIR 31 229 -33 836 238 42 0 chr11 37629526 37629715 -111153757 - MIR SINE MIR -26 236 40 293 295 157 19 chr11 37629716 37629926 -111153546 + L3 LINE CR1 703 941 -636 197 200 113 62 chr11 37631873 37631953 -111151519 + L3 LINE CR1 1257 1340 -237 305 302 12 0 chr11 37632515 37632601 -111150871 - L2 LINE L2 -1 3271 3185 2107 107 7 7 chr11 37633083 37633364 -111150108 - AluSp SINE Alu -32 281 1 310 227 0 0 chr11 37633683 37633749 -111149723 + Charlie8 DNA MER1_type 112 177 -2240 26 0 0 0 chr11 37633940 37633966 -111149506 + AT_rich Low_complexity Low_complexity 1 26 0 3881 146 82 40 chr11 37633975 37634833 -111148639 + L1MB3 LINE L1 5282 6175 -8 22 35 0 0 chr11 37635073 37635102 -111148370 + AT_rich Low_complexity Low_complexity 1 29 0 646 284 44 78 chr11 37635630 37636063 -111147409 - L1M4 LINE L1 -1239 4907 4490 257 262 47 47 chr11 37636072 37636179 -111147293 - L2 LINE L2 -80 3233 3127 183 369 115 25 chr11 37636923 37637357 -111146115 - L2 LINE L2 -611 2703 2231 1646 169 6 49 chr11 37638017 37638343 -111145129 - AluJo SINE Alu 0 312 1 2186 130 10 0 chr11 37639085 37639386 -111144086 + AluSx SINE Alu 1 304 -8 2185 212 43 69 chr11 37639775 37640444 -111143028 - MLT1E1 LTR MaLR 0 654 3 2404 115 0 0 chr11 37641603 37641915 -111141557 - AluSx SINE Alu 0 312 1 1623 182 38 7 chr11 37642751 37643042 -111140430 + AluJo SINE Alu 1 300 -12 857 200 42 50 chr11 37643456 37643696 -111139776 - L1M4 LINE L1 -3220 2926 2689 1909 169 135 17 chr11 37643696 37644052 -111139420 + MER47B DNA MER2_type 20 417 -1 2242 108 7 10 chr11 37644102 37644409 -111139063 - AluSg SINE Alu -4 306 1 222 300 14 0 chr11 37644497 37644567 -111138905 + (TATG)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chr11 37645111 37645134 -111138338 + AT_rich Low_complexity Low_complexity 1 23 0 1140 177 59 5 chr11 37645417 37645637 -111137835 + MER46A DNA MER2_type 1 232 -4 4997 248 116 25 chr11 37646021 37647160 -111136312 - L1ME LINE L1 -1944 4997 3963 2063 142 0 3 chr11 37647160 37647462 -111136010 - AluSx SINE Alu -10 302 2 4997 248 116 25 chr11 37647462 37648776 -111134696 - L1ME LINE L1 -2978 3963 2221 3521 163 44 30 chr11 37648776 37649410 -111134062 - L1MB3 LINE L1 0 6183 5536 1473 178 73 4 chr11 37649410 37649685 -111133787 + AluJo SINE Alu 1 294 -18 3521 163 44 30 chr11 37649685 37649772 -111133700 - L1MB3 LINE L1 -647 5536 5452 4997 248 116 25 chr11 37649772 37650411 -111133061 - L1ME LINE L1 -4720 2221 1642 951 216 4 17 chr11 37650412 37650644 -111132828 - L1ME LINE L1 -6178 245 17 545 273 252 11 chr11 37651202 37651488 -111131984 - L2 LINE L2 -963 2351 1997 209 329 92 0 chr11 37652275 37652351 -111131121 - MIR3 SINE MIR -52 156 74 592 272 145 4 chr11 37653176 37653404 -111130068 + MIR SINE MIR 2 261 -1 217 319 196 28 chr11 37653885 37654170 -111129302 + L2 LINE L2 316 648 -2666 945 312 217 30 chr11 37654225 37655150 -111128322 + L2 LINE L2 1160 2257 -1057 397 328 53 21 chr11 37655204 37655393 -111128079 - MIR SINE MIR -19 243 49 294 393 14 7 chr11 37655445 37655590 -111127882 + L2 LINE L2 2433 2578 -736 783 174 168 0 chr11 37655596 37655757 -111127715 - MER20 DNA MER1_type 0 219 32 429 357 92 35 chr11 37655768 37656051 -111127421 + L2 LINE L2 2574 2872 -442 288 0 0 0 chr11 37656172 37656204 -111127268 + (CA)n Simple_repeat Simple_repeat 1 32 0 529 288 116 53 chr11 37656237 37656539 -111126933 + L2 LINE L2 2984 3304 -9 541 252 42 0 chr11 37657126 37657245 -111126227 - MIR3 SINE MIR -23 185 62 205 205 0 0 chr11 37657273 37657312 -111126160 + A-rich Low_complexity Low_complexity 1 39 0 375 231 9 28 chr11 37658670 37658778 -111124694 + LTR67 LTR ERVL 428 533 -24 1578 114 47 0 chr11 37660673 37660927 -111122545 + L1MA1 LINE L1 6037 6302 0 316 244 44 0 chr11 37662195 37662285 -111121187 + Charlie7 DNA MER1_type 8 101 -2511 209 154 26 64 chr11 37662308 37662386 -111121086 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 268 278 32 40 chr11 37663653 37663779 -111119693 + LTR16B LTR ERVL 327 451 -13 233 98 24 0 chr11 37664090 37664131 -111119341 + (CA)n Simple_repeat Simple_repeat 1 42 0 209 260 41 27 chr11 37664601 37664674 -111118798 - MIR SINE MIR -125 137 64 682 185 11 118 chr11 37664748 37665026 -111118446 + MER57A LTR ERV1 64 261 -142 283 163 0 0 chr11 37665073 37665122 -111118350 + LTR54 LTR ERV1 427 475 -35 345 307 18 85 chr11 37665237 37665520 -111117952 - MLT1I LTR MaLR -2 407 144 22 0 0 0 chr11 37665795 37665817 -111117655 + AT_rich Low_complexity Low_complexity 1 22 0 610 278 26 0 chr11 37666619 37666770 -111116702 + MIR SINE MIR 12 166 -96 1304 204 26 0 chr11 37666847 37667117 -111116355 + AluJo SINE Alu 6 282 -30 1292 158 32 0 chr11 37667378 37667599 -111115873 - MLT1A1 LTR MaLR 0 365 138 186 359 19 9 chr11 37717687 37717793 -111065679 - MIR SINE MIR 0 262 156 317 317 106 0 chr11 37717836 37717959 -111065513 - MIR SINE MIR -119 143 8 412 366 11 11 chr11 37718707 37718882 -111064590 - MIR3 SINE MIR -24 184 10 224 57 0 29 chr11 37719026 37719061 -111064411 + (TC)n Simple_repeat Simple_repeat 1 34 0 439 273 102 40 chr11 37719322 37719498 -111063974 - MIR SINE MIR -35 227 41 336 288 102 34 chr11 37720083 37720260 -111063212 + L2 LINE L2 3084 3272 -41 201 159 0 0 chr11 37720989 37721033 -111062439 + (CA)n Simple_repeat Simple_repeat 1 44 0 559 249 24 41 chr11 37722022 37722191 -111061281 + MIR SINE MIR 90 255 -7 208 240 135 52 chr11 37722380 37722476 -111060996 + MIR SINE MIR 47 150 -112 213 350 98 0 chr11 37723456 37723579 -111059893 + MIR SINE MIR 36 170 -92 236 318 12 47 chr11 37723857 37723942 -111059530 - MIR SINE MIR -94 114 33 207 25 75 0 chr11 37725391 37725431 -111058041 + T-rich Low_complexity Low_complexity 2 44 0 321 357 78 0 chr11 37726400 37726529 -111056943 - MIR SINE MIR -67 195 57 180 0 0 0 chr11 37727202 37727222 -111056250 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1183 261 16 0 chr11 37729471 37729728 -111053744 - MIR SINE MIR 0 262 2 2342 64 0 7 chr11 37730803 37731100 -111052372 + AluSp SINE Alu 1 295 -18 1548 162 35 48 chr11 37731705 37732020 -111051452 - THE1C LTR MaLR -64 311 1 2727 203 23 63 chr11 37732037 37732789 -111050683 + L1ME1 LINE L1 5450 6331 -3 23 33 0 0 chr11 37733081 37733111 -111050361 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 37733592 37733613 -111049859 + (TA)n Simple_repeat Simple_repeat 2 22 0 2186 46 0 0 chr11 37733613 37733872 -111049600 - L1PA5 LINE L1 -7 6147 5889 594 289 96 19 chr11 37734415 37734623 -111048849 + MER58A DNA MER1_type 1 224 0 869 162 39 0 chr11 37735164 37735343 -111048129 + MER53 DNA DNA 2 187 -2 490 335 22 54 chr11 37736203 37736519 -111046953 + LTR16B LTR ERVL 9 314 -150 1815 179 57 7 chr11 37736539 37736884 -111046588 + MLT1A1 LTR MaLR 13 446 0 440 230 152 11 chr11 37738011 37738189 -111045283 - MER113 DNA MER1_type? -5 516 314 1631 161 0 28 chr11 37738208 37738499 -111044973 - AluJb SINE Alu -18 294 12 619 281 82 92 chr11 37738589 37739020 -111044452 + L2 LINE L2 2667 3146 -167 3986 28 2 0 chr11 37739020 37739478 -111043994 + L1PA5 LINE L1 5692 6150 -4 619 281 82 92 chr11 37739478 37739645 -111043827 + L2 LINE L2 3146 3313 0 1960 104 0 0 chr11 37739774 37740042 -111043430 + AluSx SINE Alu 40 307 -5 255 327 40 8 chr11 37741201 37741334 -111042138 - MIR SINE MIR -61 147 32 1264 248 132 62 chr11 37742440 37743000 -111040472 + MER45C DNA AcHobo 1 599 -354 241 163 20 20 chr11 37743023 37743072 -111040400 + MER45C DNA AcHobo 905 953 0 185 295 57 95 chr11 37743653 37743758 -111039714 - L2 LINE L2 -11 3302 3202 214 309 18 0 chr11 37744087 37744142 -111039330 - L2 LINE L2 -10 3262 3207 264 327 45 9 chr11 37744230 37744340 -111039132 + MIR SINE MIR 30 143 -65 252 128 26 0 chr11 37744469 37744508 -111038964 - MLT1C LTR MaLR -2 465 426 1162 29 50 0 chr11 37744509 37744648 -111038824 + AluY SINE Alu 151 296 -15 2417 166 51 0 chr11 37744648 37745063 -111038409 - MLT1C LTR MaLR -31 436 1 299 247 14 0 chr11 37745113 37745186 -111038286 + MER117 DNA MER1_type 5 78 -119 892 250 177 23 chr11 37746242 37746542 -111036930 + MLT1H LTR MaLR 195 540 -9 1791 178 0 7 chr11 37746977 37747263 -111036209 + AluJo SINE Alu 1 284 -28 365 258 91 15 chr11 37747575 37747707 -111035765 + MER117 DNA MER1_type 11 152 -45 570 265 95 16 chr11 37748463 37748652 -111034820 + MIR SINE MIR 47 250 -12 937 148 6 40 chr11 37748749 37748925 -111034547 + MLT1A1 LTR MaLR 1 170 -195 18264 91 13 20 chr11 37748927 37751565 -111031907 + L1P LINE L1 459 3077 -3069 1044 136 82 0 chr11 37751675 37751859 -111031613 + L1MA8 LINE L1 6090 6288 -3 666 274 80 5 chr11 37751961 37752173 -111031299 + MIR SINE MIR 34 261 -1 481 239 17 8 chr11 37752168 37752285 -111031187 - MIR SINE MIR -106 156 39 * 1545 217 18 15 chr11 37752503 37752840 -111030632 - MER58B DNA MER1_type -3 338 1 225 244 70 35 chr11 37752884 37752970 -111030502 - MIR SINE MIR -118 144 56 364 272 175 22 chr11 37753906 37754134 -111029338 - L1ME4a LINE L1 -16 6105 5843 383 293 105 0 chr11 37754371 37754504 -111028968 + MIR3 SINE MIR 53 199 -9 372 374 79 0 chr11 37755229 37755456 -111028016 - MIR SINE MIR -4 258 14 517 267 114 14 chr11 37755737 37755947 -111027525 + MIR SINE MIR 32 262 0 372 272 26 18 chr11 37755947 37756061 -111027411 + MIR SINE MIR 11 125 -137 338 258 125 55 chr11 37756831 37757185 -111026287 + MLT1L LTR MaLR 176 577 -11 277 190 7 4 chr11 37757688 37757961 -111025511 + AluJo SINE Alu 5 300 0 955 248 56 67 chr11 37758525 37758884 -111024588 + MLT1J2 LTR MaLR 94 448 -2 256 269 14 97 chr11 37759248 37759393 -111024079 - L1ME4a LINE L1 -2210 5598 5466 3989 142 27 49 chr11 37759412 37760165 -111023307 - L1MB2 LINE L1 -8 6163 5428 204 235 20 0 chr11 37760820 37760871 -111022601 + (TAG)n Simple_repeat Simple_repeat 2 53 0 587 278 19 0 chr11 37760907 37761069 -111022403 - MIR SINE MIR -64 198 34 3580 101 2 4 chr11 37761337 37761840 -111021632 + L1PA8 LINE L1 5667 6168 -4 270 287 0 11 chr11 37762703 37762790 -111020682 + MIR SINE MIR 46 131 -131 258 31 0 0 chr11 37763167 37763199 -111020273 + MADE1 DNA Mariner 49 80 0 226 314 25 16 chr11 37763385 37763506 -111019966 + GA-rich Low_complexity Low_complexity 2 123 0 288 0 0 0 chr11 37764392 37764424 -111019048 + (TG)n Simple_repeat Simple_repeat 1 32 0 1033 141 46 72 chr11 37764539 37764802 -111018670 + L1MC5 LINE L1 7668 7923 -38 2172 92 0 20 chr11 37764812 37765117 -111018355 + AluSp SINE Alu 1 299 -14 962 245 29 17 chr11 37765596 37765837 -111017635 + MLT1J1 LTR MaLR 37 280 -166 2533 57 3 19 chr11 37765837 37766153 -111017319 + AluY SINE Alu 1 311 0 184 283 17 0 chr11 37766515 37766575 -111016897 - MIR SINE MIR -128 134 74 2149 116 0 16 chr11 37766811 37767122 -111016350 - AluY SINE Alu -5 306 1 549 280 85 74 chr11 37767249 37767613 -111015859 + MLT1I LTR MaLR 42 409 0 468 335 22 0 chr11 37767633 37767815 -111015657 - MER117 DNA MER1_type 0 197 12 679 312 15 0 chr11 37767822 37768024 -111015448 + L2 LINE L2 2753 2957 -357 220 326 11 11 chr11 37768137 37768226 -111015246 + L2 LINE L2 3224 3312 -1 1882 73 8 0 chr11 37768742 37769031 -111014441 + L1PA6 LINE L1 5896 6186 0 1221 185 14 5 chr11 37769031 37769242 -111014230 + MLT1A1 LTR MaLR 147 359 -6 954 95 0 0 chr11 37769395 37769521 -111013951 - L1PA10 LINE L1 -540 5628 5503 3413 133 9 9 chr11 37769521 37770053 -111013419 + L1PA10 LINE L1 5614 6164 -4 283 247 144 31 chr11 37770601 37770698 -111012774 + MIR SINE MIR 96 203 -59 2310 83 3 0 chr11 37772487 37772776 -111010696 + AluSp SINE Alu 16 305 -8 388 246 110 8 chr11 37773729 37773847 -111009625 + MIR3 SINE MIR 51 180 -28 249 368 145 5 chr11 37774005 37774265 -111009207 + L2 LINE L2 2721 3017 -296 681 198 12 76 chr11 37774332 37774504 -111008968 + MER58B DNA MER1_type 181 341 0 289 314 64 29 chr11 37774520 37774692 -111008780 + L2 LINE L2 3118 3295 -18 1302 260 131 13 chr11 37775686 37776144 -111007328 + LTR33 LTR ERVL 3 514 -7 1702 308 37 31 chr11 37776787 37777494 -111005978 + ERVL LTR ERVL 3914 4624 -1140 1456 230 107 46 chr11 37777496 37778031 -111005441 - MLT1F1 LTR MaLR 0 567 17 1117 305 79 37 chr11 37778181 37778798 -111004674 + ERVL LTR ERVL 4738 5380 -384 614 286 152 0 chr11 37778989 37779199 -111004273 + LTR33 LTR ERVL 16 257 -264 180 364 58 8 chr11 37780344 37780465 -111003007 - L2 LINE L2 0 3272 3146 * 187 369 35 0 chr11 37780457 37780598 -111002874 - MIR SINE MIR -15 247 102 490 227 0 15 chr11 37781850 37781982 -111001490 + L1MB4 LINE L1 6047 6176 -4 537 225 53 137 chr11 37782212 37782497 -111000975 - MIR SINE MIR 0 262 2 320 321 14 21 chr11 37783210 37783350 -111000122 + (TGGA)n Simple_repeat Simple_repeat 4 142 0 385 313 7 14 chr11 37783382 37783529 -110999943 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 198 143 0 0 chr11 37783556 37783591 -110999881 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1944 150 10 3 chr11 37785915 37786208 -110997264 + AluSx SINE Alu 1 295 -17 567 323 44 8 chr11 37786220 37786468 -110997004 - MIR SINE MIR -5 257 1 422 321 0 15 chr11 37788094 37788228 -110995244 + MIR3 SINE MIR 66 197 -11 181 204 56 0 chr11 37788487 37788541 -110994931 - MIR SINE MIR -127 135 79 183 306 0 12 chr11 37789328 37789413 -110994059 + MIR SINE MIR 66 149 -113 207 263 81 50 chr11 37789446 37789545 -110993927 - L2 LINE L2 -57 3256 3155 484 226 95 22 chr11 37790030 37790167 -110993305 + MER117 DNA MER1_type 6 152 -45 390 259 150 14 chr11 37791572 37791719 -110991753 - MIR3 SINE MIR -18 190 24 440 254 65 27 chr11 37792084 37792269 -110991203 - L2 LINE L2 -5 3308 3117 912 249 126 50 chr11 37793387 37793809 -110989663 - MLT1L LTR MaLR -69 546 93 184 340 21 52 chr11 37794918 37795109 -110988363 + L3b LINE CR1 1230 1414 -169 1372 185 14 25 chr11 37795297 37795573 -110987899 + AluJo SINE Alu 10 282 -30 376 287 37 9 chr11 37795600 37795708 -110987764 + L2 LINE L2 3180 3290 -23 680 126 72 11 chr11 37795837 37796103 -110987369 + (TCTA)n Simple_repeat Simple_repeat 1 282 0 629 299 58 18 chr11 37796881 37797105 -110986367 + MIR SINE MIR 14 246 -16 635 249 94 20 chr11 37798534 37798735 -110984737 + MIR SINE MIR 37 252 -10 377 259 102 9 chr11 37799401 37799509 -110983963 - L2 LINE L2 0 3272 3155 294 73 0 0 chr11 37799645 37799686 -110983786 + (CA)n Simple_repeat Simple_repeat 2 42 0 723 232 54 9 chr11 37800071 37800276 -110983196 + MIR SINE MIR 4 213 -49 429 312 70 30 chr11 37800285 37800484 -110982988 - MIR SINE MIR -9 253 47 752 202 0 66 chr11 37801154 37801337 -110982135 + MIR SINE MIR 84 254 -8 8414 111 6 27 chr11 37801828 37803156 -110980316 - HSMAR2 DNA Mariner -1 1301 2 389 291 8 8 chr11 37804113 37804230 -110979242 + MIR SINE MIR 6 122 -140 286 240 146 39 chr11 37804369 37804521 -110978951 + MIR SINE MIR 18 183 -60 200 186 68 17 chr11 37804711 37804770 -110978702 + MIR SINE MIR 98 159 -103 805 339 117 19 chr11 37805028 37805566 -110977906 - L2 LINE L2 0 3313 2722 312 280 42 59 chr11 37805577 37805695 -110977777 + L1ME4a LINE L1 5848 5963 -158 255 298 12 12 chr11 37805695 37805779 -110977693 + (TATG)n Simple_repeat Simple_repeat 2 85 0 2355 102 3 13 chr11 37806085 37806263 -110977209 - AluSx SINE Alu 0 312 137 2668 45 0 0 chr11 37806263 37806573 -110976899 - AluY SINE Alu -1 310 1 2355 102 3 13 chr11 37806573 37806709 -110976763 - AluSx SINE Alu -175 137 1 1031 197 10 10 chr11 37807996 37808204 -110975268 - MER3 DNA MER1_type -1 208 1 261 291 184 0 chr11 37808585 37808723 -110974749 - MIR SINE MIR -58 150 30 436 223 53 87 chr11 37810758 37810848 -110972624 - L2 LINE L2 -76 3237 3145 1436 139 13 13 chr11 37810848 37811078 -110972394 + MER30 DNA MER1_type 1 230 0 436 223 53 87 chr11 37811078 37811193 -110972279 - L2 LINE L2 -168 3145 3039 289 285 223 8 chr11 37811214 37811344 -110972128 - L2 LINE L2 -445 2869 2712 303 288 54 36 chr11 37811887 37811998 -110971474 - L1MC4 LINE L1 -1341 6701 6589 647 91 53 11 chr11 37811998 37812265 -110971207 + (TA)n Simple_repeat Simple_repeat 1 278 0 248 171 24 37 chr11 37812265 37812347 -110971125 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 274 325 32 57 chr11 37813450 37813573 -110969899 - L2 LINE L2 -16 3256 3137 308 244 73 155 chr11 37815165 37815481 -110967991 - L2 LINE L2 -1 3312 3023 248 28 56 0 chr11 37815818 37815854 -110967618 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 323 222 156 0 chr11 37816734 37816824 -110966648 + L2 LINE L2 3169 3272 0 2256 125 0 3 chr11 37817222 37817525 -110965947 + AluSx SINE Alu 1 302 -10 981 226 120 32 chr11 37817634 37818068 -110965404 + MER113 DNA MER1_type? 5 476 -45 843 117 0 0 chr11 37818125 37818236 -110965236 - FLAM_C SINE Alu -32 111 1 194 300 178 22 chr11 37818553 37818643 -110964829 + MIR SINE MIR 40 143 -65 2105 135 0 0 chr11 37818887 37819183 -110964289 + AluSx SINE Alu 1 296 -16 308 219 187 61 chr11 37819697 37819878 -110963594 - MIR SINE MIR -13 249 37 935 62 78 0 chr11 37820734 37820863 -110962609 + MER85 DNA T2_type 1 139 0 220 297 40 14 chr11 37822059 37822133 -110961339 - L2 LINE L2 -6 3266 3191 337 234 187 9 chr11 37822176 37822283 -110961189 - L2 LINE L2 0 3313 3188 201 74 0 0 chr11 37823015 37823042 -110960430 + (T)n Simple_repeat Simple_repeat 1 27 0 1427 116 65 0 chr11 37823382 37823598 -110959874 + MER30 DNA MER1_type 1 230 0 713 305 111 29 chr11 37826340 37826681 -110956791 - L3 LINE CR1 -2 1575 1207 316 336 71 0 chr11 37826658 37826798 -110956674 + MIR3 SINE MIR 48 197 -11 * 297 318 45 0 chr11 37828803 37828891 -110954581 - L2 LINE L2 -48 3224 3133 2073 69 66 31 chr11 37828928 37829216 -110954256 + AluY SINE Alu 1 298 -13 249 57 0 0 chr11 37830166 37830201 -110953271 + (T)n Simple_repeat Simple_repeat 1 35 0 278 379 26 0 chr11 37834483 37834599 -110948873 + MIR3 SINE MIR 63 181 -27 24 32 0 0 chr11 37840552 37840583 -110942889 + AT_rich Low_complexity Low_complexity 1 31 0 1542 155 3 23 chr11 37840583 37840887 -110942585 - L1P LINE L1 -3091 3055 2758 320 77 19 0 chr11 37841892 37841944 -110941528 + (TG)n Simple_repeat Simple_repeat 2 54 0 325 219 14 0 chr11 37841998 37842071 -110941401 - MER116 DNA Mariner -2 78 5 965 68 0 0 chr11 37842634 37842752 -110940720 - AluSp/q SINE Alu -19 294 177 2306 93 10 0 chr11 37843064 37843355 -110940117 - AluSx SINE Alu -18 294 1 1709 134 0 4 chr11 37843648 37843894 -110939578 + AluSx SINE Alu 49 293 -19 452 86 14 0 chr11 37843920 37843990 -110939482 + (ATGGTG)n Simple_repeat Simple_repeat 5 75 0 1013 196 11 16 chr11 37845236 37845425 -110938047 - MER5A DNA MER1_type -1 188 1 542 268 91 27 chr11 37845492 37845712 -110937760 + MIR SINE MIR 2 235 -27 275 254 0 30 chr11 37845711 37845778 -110937694 - MIR SINE MIR -1 261 197 * 292 161 0 149 chr11 37845778 37845833 -110937639 - MER116 DNA Mariner 0 80 41 2248 90 33 7 chr11 37845833 37846134 -110937338 + AluSg SINE Alu 1 309 -1 292 161 0 149 chr11 37846134 37846165 -110937307 - MER116 DNA Mariner -39 41 7 643 258 0 25 chr11 37846169 37846332 -110937140 - MIR SINE MIR -63 199 41 351 227 30 75 chr11 37846784 37846904 -110936568 + MIR SINE MIR 70 183 -58 529 242 158 42 chr11 37846988 37847153 -110936319 + MER5A DNA MER1_type 1 184 -5 21 36 0 0 chr11 37847499 37847527 -110935945 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr11 37848157 37848188 -110935284 + AT_rich Low_complexity Low_complexity 1 31 0 910 123 0 23 chr11 37848188 37848318 -110935154 - FLAM_C SINE Alu -5 128 2 2097 119 0 0 chr11 37848567 37848844 -110934628 - AluSc SINE Alu -18 291 15 448 243 200 7 chr11 37848921 37849061 -110934411 - MER5A DNA MER1_type -14 175 9 379 332 56 31 chr11 37849116 37849312 -110934160 - MIR SINE MIR -60 202 2 2292 95 20 0 chr11 37850995 37851290 -110932182 - AluSg SINE Alu -9 301 1 258 167 202 24 chr11 37851382 37851466 -110932006 - L1ME LINE L1 -269 5852 5754 471 230 182 7 chr11 37852035 37852183 -110931289 + MER5A DNA MER1_type 9 182 -7 253 68 45 0 chr11 37852822 37852866 -110930606 + (TA)n Simple_repeat Simple_repeat 1 46 0 219 371 32 24 chr11 37854146 37854270 -110929202 - L2 LINE L2 -1 3271 3147 202 233 0 0 chr11 37854298 37854341 -110929131 - MIR SINE MIR -8 254 212 1718 119 36 25 chr11 37854685 37854995 -110928477 + AluJb SINE Alu 1 313 0 1302 149 40 0 chr11 37855251 37855452 -110928020 + MER3 DNA MER1_type 1 209 0 2033 131 10 0 chr11 37855766 37856085 -110927387 + AluSx SINE Alu 1 322 0 342 305 84 38 chr11 37856087 37856218 -110927254 + MIR3 SINE MIR 41 177 -31 212 231 0 0 chr11 37856795 37856834 -110926638 - MIR SINE MIR -18 244 206 466 228 16 24 chr11 37856964 37857091 -110926381 - MIR SINE MIR -87 175 50 2144 117 9 25 chr11 37857104 37857421 -110926051 - AluSx SINE Alu 0 312 1 1974 153 0 0 chr11 37857423 37857717 -110925755 - AluJb SINE Alu -18 294 1 630 255 25 30 chr11 37858033 37858244 -110925228 + MIR SINE MIR 1 214 -48 449 227 29 143 chr11 37858804 37858967 -110924505 + MIR SINE MIR 20 141 -121 831 155 20 90 chr11 37858967 37859167 -110924305 - MER5A DNA MER1_type -3 186 1 449 227 29 143 chr11 37859167 37859276 -110924196 + MIR SINE MIR 141 261 -1 189 94 0 0 chr11 37860434 37860466 -110923006 + (T)n Simple_repeat Simple_repeat 1 32 0 202 274 0 0 chr11 37861270 37861321 -110922151 + CT-rich Low_complexity Low_complexity 2 52 0 5095 252 65 40 chr11 37862922 37863428 -110920044 + HAL1 LINE L1 1 493 -2014 1699 178 16 10 chr11 37863428 37863737 -110919735 + AluJb SINE Alu 1 311 -1 5095 252 65 40 chr11 37863737 37865045 -110918427 + HAL1 LINE L1 493 1859 -648 1497 247 116 49 chr11 37865131 37865642 -110917830 - MLT1H LTR MaLR 0 549 5 367 279 177 14 chr11 37865827 37866042 -110917430 + MIR SINE MIR 7 256 -6 214 309 73 9 chr11 37866513 37866623 -110916849 - MIR SINE MIR -129 133 17 604 282 47 0 chr11 37867202 37867372 -110916100 + MIR SINE MIR 32 209 -53 244 190 0 127 chr11 37868817 37868896 -110914576 - L2 LINE L2 0 3272 3204 266 254 0 16 chr11 37868980 37869043 -110914429 - MIR SINE MIR -17 245 184 * 366 238 183 0 chr11 37869026 37869152 -110914320 + MIR SINE MIR 82 230 -32 437 266 114 13 chr11 37869189 37869347 -110914125 - MIR SINE MIR -87 175 2 318 192 192 0 chr11 37870387 37870460 -110913012 - Tigger5 DNA MER2_type 0 2323 2237 282 214 0 18 chr11 37870470 37870526 -110912946 - Tigger5 DNA MER2_type -2268 55 1 1857 151 10 0 chr11 37870639 37870931 -110912541 + AluSx SINE Alu 5 299 -13 204 283 40 61 chr11 37871057 37871156 -110912316 + L2 LINE L2 3173 3269 -3 226 348 56 44 chr11 37871511 37871830 -110911642 + HAL1 LINE L1 1 323 -2184 286 296 229 22 chr11 37872048 37872227 -110911245 + MIR SINE MIR 38 253 -9 525 318 31 10 chr11 37872785 37872977 -110910495 - MLT1I LTR MaLR -29 380 185 1475 170 55 19 chr11 37873627 37873918 -110909554 + AluSx SINE Alu 1 301 0 671 243 79 126 chr11 37874309 37874737 -110908735 + MLT1I LTR MaLR 1 408 -1 299 314 25 0 chr11 37874740 37874861 -110908611 - MER117 DNA MER1_type 0 197 74 417 235 0 0 chr11 37875306 37875387 -110908085 + MIR SINE MIR 108 188 -74 763 268 74 16 chr11 37875438 37875822 -110907650 + LTR16A1 LTR ERVL 3 457 0 27 73 0 0 chr11 37875822 37875877 -110907595 + AT_rich Low_complexity Low_complexity 1 55 0 183 186 0 0 chr11 37876657 37876700 -110906772 + (ATG)n Simple_repeat Simple_repeat 1 43 0 414 277 136 16 chr11 37876701 37876885 -110906587 - MIR SINE MIR -5 257 52 1339 215 68 24 chr11 37877999 37878338 -110905134 + MLT1A1 LTR MaLR 1 354 -11 488 274 52 41 chr11 37879247 37879517 -110903955 + L1ME3A LINE L1 5677 5949 -221 226 335 50 55 chr11 37879871 37880053 -110903419 - MIR3 SINE MIR -17 191 11 1148 233 84 23 chr11 37880881 37881225 -110902247 + MLT1I LTR MaLR 3 367 -42 458 291 81 12 chr11 37886281 37886453 -110897019 - MIR3 SINE MIR -23 185 2 2179 105 3 16 chr11 37888891 37889197 -110894275 + AluY SINE Alu 1 302 -9 216 307 13 0 chr11 37889729 37889804 -110893668 - MIR SINE MIR -13 249 174 440 191 61 35 chr11 37893233 37893348 -110890124 - L2 LINE L2 -4 3309 3192 2296 96 0 7 chr11 37893415 37893717 -110889755 + AluSp SINE Alu 1 300 -13 241 309 15 0 chr11 37894008 37894076 -110889396 + L2 LINE L2 3239 3307 -6 1958 83 20 0 chr11 37895177 37895431 -110888041 - AluY SINE Alu -9 302 44 753 300 25 12 chr11 37896026 37896269 -110887203 + MIR SINE MIR 2 247 -15 684 248 74 45 chr11 37897443 37897685 -110885787 + MIR SINE MIR 11 259 -3 25 0 0 0 chr11 37897693 37897718 -110885754 + AT_rich Low_complexity Low_complexity 1 25 0 3202 102 15 11 chr11 37897955 37898418 -110885054 + MER4C LTR ERV1 1 465 0 219 231 0 0 chr11 37898544 37898583 -110884889 + (ATGGTG)n Simple_repeat Simple_repeat 2 40 0 1880 144 47 0 chr11 37898626 37898924 -110884548 + AluSx SINE Alu 1 312 0 409 281 64 12 chr11 37898936 37899107 -110884365 - MIR SINE MIR -55 207 28 279 241 60 12 chr11 37899121 37899204 -110884268 + MIR SINE MIR 17 103 -159 2154 151 14 27 chr11 37899204 37899574 -110883898 + MLT1A1 LTR MaLR 1 365 0 2029 130 11 0 chr11 37900059 37900343 -110883129 + AluSx SINE Alu 1 287 -25 21 57 0 0 chr11 37900353 37900388 -110883084 + AT_rich Low_complexity Low_complexity 1 35 0 200 284 40 27 chr11 37900704 37900778 -110882694 - L2 LINE L2 0 3313 3239 239 352 57 0 chr11 37901068 37901173 -110882299 - L2 LINE L2 -463 2851 2741 690 355 96 18 chr11 37901292 37901829 -110881643 - L2 LINE L2 -785 2529 2035 1803 130 0 4 chr11 37901829 37902083 -110881389 + AluSg SINE Alu 37 289 -21 690 355 96 18 chr11 37902083 37902508 -110880964 - L2 LINE L2 -1279 2035 1492 436 163 0 0 chr11 37903297 37903377 -110880095 - MER116 DNA Mariner 0 80 1 203 305 195 17 chr11 37903559 37903733 -110879739 + MIR SINE MIR 8 212 -50 205 313 0 0 chr11 37903911 37903978 -110879494 + L2 LINE L2 3175 3241 -72 231 114 0 0 chr11 37904793 37904828 -110878644 + (TG)n Simple_repeat Simple_repeat 2 36 0 623 305 52 0 chr11 37904885 37905095 -110878377 + MIR SINE MIR 39 259 -3 385 218 0 19 chr11 37905225 37905359 -110878113 + MER5A DNA MER1_type 1 183 -6 366 248 120 0 chr11 37906419 37906544 -110876928 - MIR3 SINE MIR -62 146 7 22 0 0 0 chr11 37906678 37906700 -110876772 + AT_rich Low_complexity Low_complexity 1 22 0 1129 185 141 71 chr11 37907091 37907431 -110876041 - MLT1A1 LTR MaLR 0 365 2 202 284 25 25 chr11 37907555 37907636 -110875836 + MIR SINE MIR 59 139 -123 21 0 0 0 chr11 37907785 37907806 -110875666 + AT_rich Low_complexity Low_complexity 1 21 0 2228 87 0 11 chr11 37908495 37908781 -110874691 - AluSp SINE Alu -1 312 30 2224 118 0 0 chr11 37908968 37909264 -110874208 + AluSx SINE Alu 1 296 -16 230 284 31 63 chr11 37909748 37909875 -110873597 + L2 LINE L2 2924 3046 -226 390 250 129 8 chr11 37909949 37910081 -110873391 + MIR SINE MIR 97 244 -18 1078 244 57 51 chr11 37910197 37910389 -110873083 - L1ME1 LINE L1 -5 6161 5965 2155 134 0 3 chr11 37910389 37910694 -110872778 - AluSx SINE Alu -8 304 1 1078 244 57 51 chr11 37910694 37910854 -110872618 - L1ME1 LINE L1 -201 5965 5807 700 254 51 10 chr11 37912534 37912731 -110870741 + MIR SINE MIR 32 236 -26 233 273 91 49 chr11 37913273 37913416 -110870056 - MIR SINE MIR -80 182 34 226 158 0 0 chr11 37914237 37914275 -110869197 - MIR SINE MIR -108 154 117 216 0 0 0 chr11 37914319 37914343 -110869129 + (TA)n Simple_repeat Simple_repeat 1 24 0 615 296 30 5 chr11 37914383 37914582 -110868890 + MIR SINE MIR 2 205 -57 187 305 0 63 chr11 37914646 37914741 -110868731 + MIR3 SINE MIR 111 199 -9 225 0 0 0 chr11 37914775 37914800 -110868672 + (TG)n Simple_repeat Simple_repeat 2 26 0 274 341 16 0 chr11 37915453 37915576 -110867896 + MIR SINE MIR 53 177 -85 186 265 20 0 chr11 37916075 37916124 -110867348 - MIR SINE MIR -59 149 100 268 290 24 48 chr11 37916630 37916754 -110866718 + MIR SINE MIR 71 191 -71 500 306 100 30 chr11 37920248 37920693 -110862779 + L1ME4a LINE L1 5435 5908 -213 2202 139 0 0 chr11 37921484 37921793 -110861679 - AluSx SINE Alu -3 309 1 237 33 0 0 chr11 37923210 37923240 -110860232 + (GA)n Simple_repeat Simple_repeat 1 30 0 356 362 18 0 chr11 37923350 37923513 -110859959 - MIR SINE MIR -26 236 71 188 261 0 0 chr11 37924132 37924178 -110859294 - MIR SINE MIR -113 149 104 188 33 0 33 chr11 37925259 37925289 -110858183 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1448 181 21 42 chr11 37925293 37925581 -110857891 - AluJo SINE Alu -16 286 5 322 274 84 17 chr11 37926134 37926280 -110857192 + MER5A DNA MER1_type 14 186 -3 198 296 51 41 chr11 37926197 37926295 -110857177 - MER5A DNA MER1_type -87 102 4 * 202 351 36 24 chr11 37926747 37926912 -110856560 + L2 LINE L2 2741 2907 -407 376 238 90 25 chr11 37927146 37927268 -110856204 + L2 LINE L2 3138 3267 -5 2359 156 73 26 chr11 37927285 37927748 -110855724 + MER31A LTR ERV1 1 485 0 271 222 16 0 chr11 37928044 37928107 -110855365 + MIR SINE MIR 194 257 -5 381 271 53 0 chr11 37928112 37928245 -110855227 - MIR SINE MIR -75 187 48 437 301 45 17 chr11 37928287 37928463 -110855009 + MIR SINE MIR 79 259 -3 30 27 0 0 chr11 37928553 37928590 -110854882 + AT_rich Low_complexity Low_complexity 1 37 0 2084 102 4 4 chr11 37929293 37929559 -110853913 + AluSg SINE Alu 5 270 -40 189 0 0 0 chr11 37929565 37929586 -110853886 + (TC)n Simple_repeat Simple_repeat 2 22 0 240 35 0 0 chr11 37929603 37929632 -110853840 + (TA)n Simple_repeat Simple_repeat 1 29 0 490 65 0 0 chr11 37930508 37930569 -110852903 - MADE1 DNA Mariner 0 80 20 1654 213 30 11 chr11 37930569 37930923 -110852549 + MLT1A1 LTR MaLR 3 364 -1 1900 145 0 30 chr11 37930966 37931263 -110852209 + AluJb SINE Alu 2 289 -23 23 33 0 0 chr11 37931272 37931302 -110852170 + AT_rich Low_complexity Low_complexity 1 30 0 861 174 64 6 chr11 37931311 37931483 -110851989 + MLT1A1 LTR MaLR 184 365 0 380 286 11 0 chr11 37931489 37931580 -110851892 - MER58 DNA MER1_type -249 92 1 23 0 0 0 chr11 37932568 37932591 -110850881 + AT_rich Low_complexity Low_complexity 1 23 0 726 168 37 47 chr11 37934969 37935160 -110848312 + MER53 DNA DNA 1 189 0 550 273 59 11 chr11 37935540 37935727 -110847745 - MIR SINE MIR -39 223 28 1688 163 179 8 chr11 37936709 37937101 -110846371 - L1MA4A LINE L1 -23 6280 5822 229 340 77 0 chr11 37937779 37937935 -110845537 - MIR3 SINE MIR -7 201 34 1048 220 79 26 chr11 37938654 37939000 -110844472 - MSTD LTR MaLR 0 396 1 244 268 32 76 chr11 37941117 37941274 -110842198 + L1MC/D LINE L1 5527 5676 -2132 2209 118 20 0 chr11 37941385 37941691 -110841781 - AluSx SINE Alu 0 312 1 211 292 125 17 chr11 37941874 37941994 -110841478 - MER5B DNA MER1_type -45 133 1 417 39 0 0 chr11 37942103 37942154 -110841318 + (GA)n Simple_repeat Simple_repeat 1 51 0 1300 197 157 10 chr11 37942807 37943107 -110840365 + MER2 DNA MER2_type 2 345 0 2301 105 0 0 chr11 37944664 37944958 -110838514 + AluSg SINE Alu 1 294 -16 230 81 27 0 chr11 37945002 37945039 -110838433 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 2274 122 0 3 chr11 37945743 37946055 -110837417 + AluSq SINE Alu 1 311 -2 261 298 48 0 chr11 37947238 37947322 -110836150 + MER5A DNA MER1_type 3 90 -99 199 244 154 26 chr11 37948042 37948120 -110835352 - MIR SINE MIR -155 107 20 22 0 0 0 chr11 37948289 37948311 -110835161 + AT_rich Low_complexity Low_complexity 1 22 0 255 286 13 13 chr11 37948843 37948920 -110834552 + MIR SINE MIR 11 87 -175 212 179 0 0 chr11 37950324 37950363 -110833109 + (TATAA)n Simple_repeat Simple_repeat 1 39 0 200 265 0 0 chr11 37950483 37950532 -110832940 - MIR SINE MIR -4 258 210 183 363 88 0 chr11 37950772 37950863 -110832609 + L2 LINE L2 3134 3232 -40 543 328 74 14 chr11 37950981 37951160 -110832312 - L2 LINE L2 -3 3310 3105 2746 88 11 16 chr11 37951160 37951537 -110831935 - THE1C LTR MaLR 0 375 1 543 328 74 14 chr11 37951537 37951653 -110831819 - L2 LINE L2 -208 3105 2997 232 259 0 0 chr11 37953497 37953555 -110829917 + MIR SINE MIR 30 87 -121 226 299 126 0 chr11 37953700 37953787 -110829685 + MIR3 SINE MIR 111 208 0 426 323 80 51 chr11 37955426 37955739 -110827733 + L2 LINE L2 2951 3272 0 2369 108 0 3 chr11 37955912 37956217 -110827255 + AluSq SINE Alu 1 304 -9 333 314 8 0 chr11 37957378 37957496 -110825976 + L1ME3A LINE L1 6052 6170 0 257 306 12 0 chr11 37957982 37958067 -110825405 - MIR SINE MIR -112 150 65 667 310 9 0 chr11 37958601 37958814 -110824658 - MIR SINE MIR -6 256 42 3808 118 68 5 chr11 37959151 37959769 -110823703 + L1MC1 LINE L1 5662 6318 -15 256 367 8 8 chr11 37959802 37959922 -110823550 - MER5A DNA MER1_type -52 137 18 460 306 18 18 chr11 37959934 37960104 -110823368 - L3 LINE CR1 -115 1462 1293 601 287 37 28 chr11 37960114 37960330 -110823142 - MIR SINE MIR -37 225 8 2085 207 30 45 chr11 37960703 37961211 -110822261 + MLT1D LTR MaLR 2 501 -4 198 274 0 0 chr11 37962732 37962783 -110820689 + L2 LINE L2 3218 3268 -4 2096 128 0 13 chr11 37963366 37963671 -110819801 + AluSx SINE Alu 5 305 -7 1962 135 3 57 chr11 37963884 37964202 -110819270 - AluSx SINE Alu -3 309 9 488 274 16 89 chr11 37964311 37964501 -110818971 + Charlie8 DNA MER1_type 185 360 -2057 540 0 0 0 chr11 37965046 37965106 -110818366 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 257 212 204 9 chr11 37965137 37965250 -110818222 - MIR SINE MIR -94 168 34 880 127 16 0 chr11 37965921 37966047 -110817425 + AluJb SINE Alu 10 137 -175 39 22 0 0 chr11 37966068 37966114 -110817358 + AT_rich Low_complexity Low_complexity 1 46 0 2904 78 8 0 chr11 37966181 37966567 -110816905 + L1PA10 LINE L1 5776 6164 -4 251 218 195 23 chr11 37966810 37966897 -110816575 - MIR SINE MIR -98 164 63 437 145 0 14 chr11 37967048 37967117 -110816355 + MER58 DNA MER1_type 2353 2420 0 292 248 53 9 chr11 37967931 37968044 -110815428 + MIR3 SINE MIR 68 185 -23 213 240 0 0 chr11 37968141 37968191 -110815281 + (TTA)n Simple_repeat Simple_repeat 3 52 0 197 271 0 0 chr11 37968211 37968259 -110815213 - MIR SINE MIR 0 262 215 1042 184 104 0 chr11 37968312 37968513 -110814959 + MER58A DNA MER1_type 1 222 -2 1004 293 109 18 chr11 37968663 37969049 -110814423 + MLT1K LTR MaLR 158 578 -10 249 185 93 0 chr11 37969085 37969139 -110814333 - MIR SINE MIR -107 101 43 201 121 0 0 chr11 37969899 37969932 -110813540 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 271 340 0 10 chr11 37970748 37970851 -110812621 + MIR SINE MIR 45 146 -116 29 0 0 0 chr11 37971705 37971734 -110811738 + AT_rich Low_complexity Low_complexity 1 29 0 633 248 122 62 chr11 37971813 37972297 -110811175 + L1MC4a LINE L1 5437 5949 -1859 200 57 0 29 chr11 37972745 37972780 -110810692 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1022 155 0 23 chr11 37972871 37973045 -110810427 + AluJb SINE Alu 137 306 -6 3396 120 12 6 chr11 37973415 37973924 -110809548 + MER41E LTR ERV1 1 512 0 312 167 0 0 chr11 37974018 37974090 -110809382 + (CA)n Simple_repeat Simple_repeat 1 72 0 779 250 259 6 chr11 37974341 37974677 -110808795 - L2 LINE L2 0 3313 2893 541 271 0 53 chr11 37976084 37976283 -110807189 - MIR SINE MIR -32 230 46 1187 59 13 0 chr11 37976291 37976444 -110807028 - L1PA7 LINE L1 0 6154 6000 581 248 29 78 chr11 37977642 37977848 -110805624 + MER117 DNA MER1_type 2 197 0 768 164 0 23 chr11 37977975 37978103 -110805369 - FLAM_C SINE Alu -17 126 2 2242 106 3 3 chr11 37978842 37979145 -110804327 + AluSx SINE Alu 1 303 -9 478 290 0 14 chr11 37980163 37980301 -110803171 + MIR3 SINE MIR 25 160 -48 489 264 75 33 chr11 37980577 37980789 -110802683 - MIR SINE MIR -9 253 33 236 260 0 0 chr11 37981299 37981349 -110802123 - MIR SINE MIR 0 262 213 278 371 8 30 chr11 37981383 37981515 -110801957 - MIR SINE MIR -63 145 17 405 279 55 58 chr11 37981728 37981855 -110801617 + L1ME4a LINE L1 5814 5940 -181 2183 139 0 0 chr11 37981855 37982165 -110801307 - AluSg SINE Alu 0 310 1 405 279 55 58 chr11 37982165 37982345 -110801127 + L1ME4a LINE L1 5940 6120 -1 276 197 13 26 chr11 37983251 37983327 -110800145 + HsTC2 DNA Tc2 4 78 -1820 327 250 24 0 chr11 37983557 37983641 -110799831 + L2 LINE L2 2971 3056 -216 1373 198 6 55 chr11 37984401 37984729 -110798743 + AluJo SINE Alu 1 312 0 367 124 168 7 chr11 37984791 37984917 -110798555 + MER20 DNA MER1_type 1 218 -1 236 284 14 0 chr11 37985142 37985216 -110798256 + HsTC2 DNA Tc2 5 79 -1819 2337 111 0 13 chr11 37985834 37986140 -110797332 + AluSx SINE Alu 1 302 -10 220 244 56 78 chr11 37986156 37986246 -110797226 + MIR SINE MIR 89 176 -86 2019 124 0 54 chr11 37987191 37987505 -110795967 + AluSg SINE Alu 1 297 -13 226 332 45 14 chr11 37987675 37987895 -110795577 + L1ME4a LINE L1 5592 5818 -303 2003 149 0 0 chr11 37988096 37988385 -110795087 + AluSc SINE Alu 1 289 -20 361 254 65 22 chr11 37988458 37988596 -110794876 + L1ME4a LINE L1 5972 6115 -6 2101 152 0 0 chr11 37991103 37991413 -110792059 - AluSx SINE Alu -2 310 1 542 192 108 8 chr11 37991438 37991568 -110791904 - MER103 DNA DNA -8 158 16 1781 164 7 17 chr11 37991932 37992230 -110791242 + AluJb SINE Alu 1 295 -17 568 306 19 24 chr11 37992667 37992873 -110790599 + MIR SINE MIR 32 236 -26 644 270 107 0 chr11 37993124 37993339 -110790133 - MIR SINE MIR -1 261 24 270 344 86 0 chr11 37993871 37993999 -110789473 - MIR SINE MIR -77 185 47 449 304 149 0 chr11 37994818 37995012 -110788460 + MIR SINE MIR 40 262 0 362 246 90 15 chr11 37995046 37995180 -110788292 - MIR SINE MIR -12 250 107 257 204 0 0 chr11 37995275 37995329 -110788143 - MIR SINE MIR -110 152 99 243 274 32 0 chr11 37995670 37995732 -110787740 + LTR16C LTR ERVL 428 491 0 1117 189 14 27 chr11 37996077 37996299 -110787173 + MER20 DNA MER1_type 1 219 0 242 187 67 40 chr11 37996418 37996493 -110786979 + MLT1I LTR MaLR 59 135 -274 1502 270 62 19 chr11 37996498 37996964 -110786508 + LTR16C LTR ERVL 6 491 0 554 287 78 41 chr11 37996965 37997233 -110786239 + MLT1I LTR MaLR 132 409 0 1501 269 42 8 chr11 37997943 37998415 -110785057 + MER113 DNA MER1_type? 1 488 -33 580 221 27 27 chr11 37998514 37998663 -110784809 + MIR SINE MIR 23 171 -91 224 281 101 0 chr11 37998729 37998818 -110784654 - MIR SINE MIR -85 177 80 270 288 79 29 chr11 38000330 38000469 -110783003 - MIR SINE MIR 0 262 117 180 258 75 0 chr11 38001948 38002041 -110781431 + MER5A DNA MER1_type 9 108 -81 712 287 29 5 chr11 38003060 38003269 -110780203 - MIR SINE MIR -36 226 13 233 303 0 0 chr11 38004090 38004156 -110779316 - MIR SINE MIR -21 241 176 730 286 33 0 chr11 38004158 38004368 -110779104 + MIR SINE MIR 12 228 -34 1272 92 10 46 chr11 38004715 38004911 -110778561 + MER30B DNA MER1_type 2 190 0 434 228 106 63 chr11 38005154 38005343 -110778129 - MER6B DNA MER2_type -13 197 1 28 48 0 0 chr11 38005374 38005416 -110778056 + AT_rich Low_complexity Low_complexity 1 42 0 769 283 31 0 chr11 38006026 38006249 -110777223 - MIR SINE MIR -17 245 16 1625 193 51 28 chr11 38006389 38006778 -110776694 + L1MD3 LINE L1 7589 7986 -9 654 264 6 16 chr11 38007313 38007495 -110775977 - MIR SINE MIR -25 237 58 317 310 47 16 chr11 38007720 38007849 -110775623 - MIR SINE MIR -109 153 21 2236 104 3 3 chr11 38009184 38009482 -110773990 + AluSp SINE Alu 1 298 -15 25 31 0 0 chr11 38010885 38010917 -110772555 + AT_rich Low_complexity Low_complexity 1 32 0 182 36 0 36 chr11 38011202 38011230 -110772242 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 646 274 119 36 chr11 38011436 38011798 -110771674 + MLT1K LTR MaLR 154 545 -43 463 289 84 5 chr11 38012237 38012427 -110771045 - MIR SINE MIR -57 205 1 2373 91 0 0 chr11 38012751 38013047 -110770425 + AluSx SINE Alu 1 296 -16 330 256 108 45 chr11 38013219 38013442 -110770030 + L1ME4a LINE L1 5651 5887 -234 962 253 17 17 chr11 38013709 38013950 -110769522 + MIR SINE MIR 22 262 0 271 330 43 0 chr11 38013956 38014050 -110769422 + L2 LINE L2 3158 3255 -17 21 0 0 0 chr11 38014521 38014542 -110768930 + AT_rich Low_complexity Low_complexity 1 21 0 525 173 55 9 chr11 38015562 38015672 -110767800 - MIR SINE MIR -72 190 76 2405 53 3 0 chr11 38016123 38016439 -110767033 + AluY SINE Alu 1 317 0 370 287 72 24 chr11 38016920 38017087 -110766385 - MIR SINE MIR -3 259 85 865 150 24 0 chr11 38017175 38017302 -110766170 - FLAM_C SINE Alu -11 132 3 454 288 75 13 chr11 38018173 38018365 -110765107 - MIR SINE MIR -56 206 6 180 0 0 0 chr11 38018631 38018651 -110764821 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1965 134 4 4 chr11 38018653 38018928 -110764544 - AluJb SINE Alu -33 279 5 1357 193 45 0 chr11 38019037 38019326 -110764146 + L1PB4 LINE L1 5840 6145 -21 2141 134 3 6 chr11 38019670 38020007 -110763465 - AluSq SINE Alu 0 336 1 819 153 8 0 chr11 38020025 38020149 -110763323 - FLAM_C SINE Alu -18 125 1 191 196 43 0 chr11 38020165 38020211 -110763261 + MIR SINE MIR 98 145 -63 437 253 37 100 chr11 38020435 38020704 -110762768 + MER112 DNA MER1_type 2 253 -3 1053 192 21 56 chr11 38020721 38020897 -110762575 + MER33 DNA MER1_type 40 204 -2381 2237 118 0 0 chr11 38020897 38021201 -110762271 - AluSq SINE Alu -7 306 3 1053 192 21 56 chr11 38021201 38021311 -110762161 + MER33 DNA MER1_type 204 316 -8 1188 232 0 0 chr11 38021329 38021549 -110761923 + MER58A DNA MER1_type 4 223 -1 376 254 113 35 chr11 38021582 38021724 -110761748 - MIR SINE MIR -87 175 23 313 28 0 0 chr11 38022195 38022231 -110761241 - tRNA-Arg-AGA tRNA tRNA -40 36 1 205 256 33 100 chr11 38023074 38023164 -110760308 - MIR SINE MIR -87 175 92 184 277 157 0 chr11 38023328 38023411 -110760061 + L2 LINE L2 3177 3272 0 277 83 0 0 chr11 38025717 38025753 -110757719 + MLT1A1 LTR MaLR 1 36 -338 8110 10 0 3 chr11 38025757 38026856 -110756616 - L1PA2 LINE L1 0 6155 5058 7152 19 0 0 chr11 38026856 38027680 -110755792 + L1PA2 LINE L1 4236 5059 -1087 1943 162 27 3 chr11 38027680 38028014 -110755458 + MLT1A1 LTR MaLR 24 365 0 2979 127 0 2 chr11 38028327 38028767 -110754705 + L1PA15 LINE L1 5727 6165 0 754 256 108 20 chr11 38030185 38030490 -110752982 + L1ME4a LINE L1 5571 5902 -219 4866 137 65 38 chr11 38030843 38031719 -110751753 - MER4D LTR ERV1 -3 900 1 213 39 0 0 chr11 38032093 38032119 -110751353 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 3351 182 75 23 chr11 38032165 38032867 -110750605 + MER21B LTR ERV1 1 739 -124 688 286 31 8 chr11 38033176 38033431 -110750041 - MIR SINE MIR 0 262 2 445 164 45 82 chr11 38033586 38033696 -110749776 - MER45A DNA AcHobo -1 177 72 231 273 0 0 chr11 38036253 38036308 -110747164 + L2 LINE L2 3012 3066 -206 204 308 50 81 chr11 38036410 38036670 -110746802 - L2 LINE L2 -138 3175 2924 559 289 44 57 chr11 38036700 38036998 -110746474 - L2 LINE L2 -816 2498 2205 337 276 0 20 chr11 38037239 38037337 -110746135 + 7SK RNA RNA 1 96 -97 2630 68 3 0 chr11 38038378 38038701 -110744771 + THE1A LTR MaLR 1 324 -31 2113 137 0 0 chr11 38039710 38040025 -110743447 + AluSx SINE Alu 1 315 0 1465 168 4 4 chr11 38040236 38040504 -110742968 - L1MA8 LINE L1 -13 6278 6011 1035 259 90 35 chr11 38040633 38041034 -110742438 + LTR16A LTR ERVL 21 443 -7 946 183 0 24 chr11 38041534 38041703 -110741769 - FAM SINE Alu -10 165 1 244 261 120 0 chr11 38042278 38042370 -110741102 + MIR SINE MIR 106 208 -54 340 317 41 8 chr11 38043217 38043340 -110740132 - MER102a DNA MER1_type -26 304 178 886 296 21 4 chr11 38043347 38043590 -110739882 + MIR SINE MIR 4 250 -12 349 299 91 26 chr11 38043616 38043770 -110739702 - MER102a DNA MER1_type -154 176 13 466 303 113 23 chr11 38050038 38050259 -110733213 + MIR SINE MIR 12 252 -10 24 0 0 0 chr11 38050359 38050383 -110733089 + AT_rich Low_complexity Low_complexity 1 24 0 189 311 75 0 chr11 38051427 38051441 -110732031 + L3 LINE CR1 1111 1123 -454 476 224 21 94 chr11 38051441 38051633 -110731839 - MER5B DNA MER1_type 0 178 1 189 311 75 0 chr11 38051633 38051724 -110731748 + L3 LINE CR1 1123 1224 -353 396 269 121 50 chr11 38051917 38052099 -110731373 + MIR SINE MIR 19 213 -49 184 255 0 20 chr11 38052440 38052491 -110730981 - MER5A DNA MER1_type -4 185 136 486 293 66 6 chr11 38052684 38052851 -110730621 - MIR SINE MIR -10 252 76 250 244 0 100 chr11 38052854 38052944 -110730528 - LTR33 LTR ERVL 0 521 441 1869 154 31 0 chr11 38054469 38054762 -110728710 - AluJb SINE Alu 0 312 11 931 190 34 11 chr11 38054799 38054978 -110728494 - L1PA16 LINE L1 -9 6157 5975 6904 82 6 16 chr11 38055067 38056148 -110727324 - L1PA10 LINE L1 -1 6167 5095 598 308 94 20 chr11 38056175 38056647 -110726825 + L2 LINE L2 2595 3165 -107 438 75 0 170 chr11 38057463 38057557 -110725915 - MADE1 DNA Mariner 0 80 3 242 345 55 9 chr11 38057570 38057680 -110725792 + MIR SINE MIR 29 143 -119 514 296 74 37 chr11 38058086 38058275 -110725197 + MER91A DNA MER1_type 1 196 0 217 197 42 56 chr11 38058275 38058309 -110725163 + L2 LINE L2 3232 3264 -8 564 273 154 49 chr11 38058606 38058892 -110724580 - LTR33 LTR ERVL -182 339 24 219 286 16 16 chr11 38058903 38058966 -110724506 - MIR SINE MIR -196 66 4 360 331 69 23 chr11 38059745 38059875 -110723597 + MIR SINE MIR 15 150 -112 429 223 154 8 chr11 38060509 38060639 -110722833 + MIR SINE MIR 82 230 -32 656 128 0 0 chr11 38062669 38062755 -110720717 + AluS SINE Alu 2 87 -226 256 172 172 0 chr11 38062755 38062813 -110720659 - L1PB4 LINE L1 -119 6037 5970 274 213 0 0 chr11 38062813 38062860 -110720612 - Tigger5 DNA MER2_type -2261 62 16 226 73 49 0 chr11 38062865 38062906 -110720566 + (TA)n Simple_repeat Simple_repeat 2 44 0 2856 205 43 3 chr11 38062906 38063482 -110719990 - MER90 LTR ERV1 -1 613 15 1825 248 120 17 chr11 38063622 38064223 -110719249 + MLT2F LTR ERVL 1 663 0 323 294 49 28 chr11 38064745 38064888 -110718584 - MIR SINE MIR -32 230 85 2639 21 7 0 chr11 38064897 38065219 -110718253 + L1PA2 LINE L1 5853 6176 0 538 180 27 0 chr11 38065398 38065509 -110717963 + MLT1F LTR MaLR 429 542 0 443 262 166 38 chr11 38068015 38068305 -110715167 - MER102a DNA MER1_type -3 327 1 205 333 124 19 chr11 38068547 38068652 -110714820 + L2 LINE L2 3136 3251 -21 1104 111 0 0 chr11 38068668 38068848 -110714624 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 354 261 108 23 chr11 38068989 38069119 -110714353 - L2 LINE L2 -5 3308 3168 186 309 36 12 chr11 38069327 38069411 -110714061 - L2 LINE L2 -22 3250 3165 585 301 31 25 chr11 38069934 38070130 -110713342 + MIR SINE MIR 10 206 -56 960 115 0 8 chr11 38070330 38070460 -110713012 - AluSq/x SINE Alu -179 133 5 224 54 54 0 chr11 38071205 38071242 -110712230 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 1841 158 0 17 chr11 38071249 38071540 -110711932 - AluSx SINE Alu -26 286 1 261 128 0 0 chr11 38071563 38071610 -110711862 + (TC)n Simple_repeat Simple_repeat 2 48 0 315 0 0 0 chr11 38071612 38071647 -110711825 + (CA)n Simple_repeat Simple_repeat 1 35 0 936 208 22 98 chr11 38073080 38073354 -110710118 + MIR SINE MIR 8 260 -2 371 278 14 42 chr11 38073360 38073504 -110709968 - MIR SINE MIR -72 190 51 1165 249 29 87 chr11 38073520 38074037 -110709435 - L2 LINE L2 0 3313 2827 1869 154 31 0 chr11 38077555 38077848 -110705624 - AluJb SINE Alu 0 312 11 931 190 34 11 chr11 38077885 38078064 -110705408 - L1PA16 LINE L1 -9 6157 5975 5720 86 21 8 chr11 38078153 38078953 -110704519 - L1PA10 LINE L1 -1 6482 5672 971 120 7 0 chr11 38078950 38079100 -110704372 + L1P LINE L1 4640 4790 -1356 * 25863 169 30 31 chr11 38079102 38082158 -110701314 - L1PA10 LINE L1 -790 5671 2551 2264 87 3 7 chr11 38082158 38082458 -110701014 - AluY SINE Alu -12 299 1 25863 169 30 31 chr11 38082458 38085007 -110698465 - L1PA10 LINE L1 -3910 2551 2 270 0 0 0 chr11 38085085 38085115 -110698357 + (A)n Simple_repeat Simple_repeat 1 30 0 520 266 88 16 chr11 38085584 38085776 -110697696 + Charlie8 DNA MER1_type 13 218 -2199 2143 141 32 9 chr11 38086624 38086972 -110696500 + MLT1A1 LTR MaLR 10 365 0 642 307 50 24 chr11 38086977 38087472 -110696000 + L1MEd LINE L1 732 1239 -4880 278 196 118 0 chr11 38087913 38087964 -110695508 + L2 LINE L2 3246 3302 -11 317 307 79 16 chr11 38087999 38088126 -110695346 + MIR SINE MIR 66 200 -62 630 233 44 44 chr11 38089359 38089565 -110693907 + LTR16A1 LTR ERVL 252 457 0 2421 185 68 32 chr11 38092017 38092519 -110690953 + MLT2B1 LTR ERVL 1 520 0 1046 299 28 30 chr11 38092570 38092965 -110690507 - LTR16C LTR ERVL 0 491 98 21 36 0 0 chr11 38093298 38093326 -110690146 + AT_rich Low_complexity Low_complexity 1 28 0 213 208 21 21 chr11 38094826 38094874 -110688598 + L2 LINE L2 3262 3309 -4 * 266 293 71 0 chr11 38094872 38094971 -110688501 + MIR SINE MIR 131 236 -26 6385 28 17 16 chr11 38095269 38096031 -110687441 - L1PA5 LINE L1 0 6154 5392 216 67 0 0 chr11 38096576 38096606 -110686866 + (CA)n Simple_repeat Simple_repeat 2 31 0 458 309 15 39 chr11 38097625 38097829 -110685643 - MIR SINE MIR -48 214 16 491 278 61 53 chr11 38098988 38099362 -110684110 + L1ME4a LINE L1 5547 5933 -188 1284 122 26 74 chr11 38099362 38099592 -110683880 - MER20 DNA MER1_type 0 219 1 2544 65 3 0 chr11 38101402 38101709 -110681763 + AluY SINE Alu 1 308 -3 764 320 36 13 chr11 38101900 38102305 -110681167 + LTR16A1 LTR ERVL 72 455 -2 315 226 36 12 chr11 38102439 38102523 -110680949 + MER94 DNA DNA 6 91 -43 410 224 116 48 chr11 38103578 38103725 -110679747 + MER103 DNA DNA 2 158 -8 395 291 70 6 chr11 38105026 38105184 -110678288 - MIR SINE MIR -16 246 79 461 252 16 16 chr11 38105239 38105362 -110678110 + MIR SINE MIR 28 150 -112 476 301 127 33 chr11 38106031 38106363 -110677109 + L2 LINE L2 2935 3297 -16 1129 300 50 18 chr11 38107306 38108148 -110675324 - L2 LINE L2 -1 3312 2435 249 291 25 0 chr11 38108907 38108986 -110674486 - L2 LINE L2 0 3313 3233 370 318 67 41 chr11 38109853 38110048 -110673424 - MIR SINE MIR -39 223 24 1061 238 5 5 chr11 38110629 38110843 -110672629 + MER58A DNA MER1_type 3 216 -8 2539 115 27 0 chr11 38111234 38111599 -110671873 + THE1C LTR MaLR 1 375 0 398 194 0 0 chr11 38111932 38112004 -110671468 + AluJ/FRAM SINE Alu 231 302 0 414 278 232 8 chr11 38112010 38112251 -110671221 + L2 LINE L2 3019 3313 0 283 296 40 8 chr11 38112266 38112391 -110671081 - MIR SINE MIR -62 200 72 497 287 44 17 chr11 38112419 38112600 -110670872 + MIR SINE MIR 4 189 -73 309 68 0 0 chr11 38113781 38113825 -110669647 + (TG)n Simple_repeat Simple_repeat 2 45 0 606 248 62 62 chr11 38114213 38114439 -110669033 + MIR SINE MIR 25 250 -12 659 276 107 0 chr11 38114681 38114906 -110668566 + MIR SINE MIR 13 261 -1 191 276 162 0 chr11 38114971 38115076 -110668396 + L2 LINE L2 3090 3211 -61 549 236 23 54 chr11 38115389 38115641 -110667831 - L1ME LINE L1 -5070 1302 947 * 6085 99 0 2 chr11 38115635 38116456 -110667016 - L1PA8 LINE L1 0 6172 5354 279 0 0 0 chr11 38116458 38116489 -110666983 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 504 127 0 0 chr11 38116489 38116560 -110666912 - AluSg/x SINE Alu -29 283 213 1020 229 9 9 chr11 38116953 38117163 -110666309 + MER63A DNA MER1_type 1 210 0 244 237 0 53 chr11 38117212 38117288 -110666184 - MIR SINE MIR 0 262 191 1218 137 23 6 chr11 38117335 38117361 -110666111 - MSTA LTR MaLR -8 424 400 2768 25 0 9 chr11 38117361 38117677 -110665795 + AluYb8 SINE Alu 1 313 -5 1218 137 23 6 chr11 38117677 38117863 -110665609 - MSTA LTR MaLR -32 400 206 2158 117 38 46 chr11 38117888 38118255 -110665217 + THE1B LTR MaLR 1 364 0 2414 101 0 0 chr11 38118385 38118692 -110664780 - AluSx SINE Alu -5 307 1 764 212 241 17 chr11 38118855 38119091 -110664381 - L1MD3 LINE L1 -155 7840 7552 265 238 48 48 chr11 38119997 38120102 -110663370 + MIR SINE MIR 48 152 -110 1602 164 0 27 chr11 38121382 38121645 -110661827 - AluSx SINE Alu -14 298 43 439 123 15 0 chr11 38122773 38122838 -110660634 - MSTA LTR MaLR -254 121 56 1580 175 24 69 chr11 38122957 38123381 -110660091 + MER34B LTR ERV1 5 397 -168 1136 229 10 38 chr11 38123936 38124224 -110659248 + MLT1A1 LTR MaLR 1 280 -85 186 43 0 0 chr11 38124248 38124271 -110659201 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 530 100 10 0 chr11 38124273 38124373 -110659099 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1424 156 14 81 chr11 38124373 38124668 -110658804 - AluSx SINE Alu -22 290 16 536 225 0 77 chr11 38124854 38125063 -110658409 + AluJb SINE Alu 106 298 -14 1379 191 48 61 chr11 38125272 38125660 -110657812 + MLT1D LTR MaLR 30 505 -105 995 229 72 20 chr11 38125948 38126240 -110657232 + MLT1A1 LTR MaLR 1 307 -58 4581 125 3 1 chr11 38126373 38127084 -110656388 - L1P LINE L1 -1134 5012 4301 219 191 0 0 chr11 38128268 38128310 -110655162 - MIR SINE MIR 0 262 221 589 274 81 5 chr11 38128312 38128509 -110654963 - MIR SINE MIR -5 257 46 474 252 80 61 chr11 38129208 38129471 -110654001 + L1MC4a LINE L1 6681 6842 -966 249 321 152 0 chr11 38130576 38130688 -110652784 + L2 LINE L2 3182 3310 -3 289 292 140 43 chr11 38131060 38131317 -110652155 + MLT1I LTR MaLR 14 295 -114 530 271 116 5 chr11 38131949 38132148 -110651324 + MIR SINE MIR 14 234 -28 1559 189 0 53 chr11 38132394 38132717 -110650755 - AluJo SINE Alu -6 306 1 307 85 85 17 chr11 38132870 38132929 -110650543 - Alu SINE Alu 0 302 240 991 96 15 0 chr11 38132932 38133068 -110650404 - AluJb SINE Alu -174 138 1 194 309 209 5 chr11 38133079 38133270 -110650202 + L2 LINE L2 1875 2104 -1210 2401 130 25 0 chr11 38134137 38134492 -110648980 - THE1B LTR MaLR 0 364 1 694 241 0 0 chr11 38134702 38134835 -110648637 + FLAM_A SINE Alu 1 133 0 722 282 46 8 chr11 38134922 38135163 -110648309 - MIR SINE MIR -12 250 1 246 231 77 22 chr11 38136672 38136763 -110646709 - L1ME4a LINE L1 -13 6108 6013 380 178 11 22 chr11 38137113 38137203 -110646269 + MIR SINE MIR 56 144 -118 287 31 0 0 chr11 38137203 38137235 -110646237 + MSTA LTR MaLR 1 32 -396 258 116 0 0 chr11 38137610 38137653 -110645819 + (TCTCCC)n Simple_repeat Simple_repeat 4 46 0 441 288 78 55 chr11 38137674 38138074 -110645398 + L2 LINE L2 2864 3272 0 2392 53 0 0 chr11 38138524 38138829 -110644643 - AluY SINE Alu 0 305 1 373 253 44 32 chr11 38138943 38139101 -110644371 + Charlie7 DNA MER1_type 6 165 -2447 3948 159 55 62 chr11 38140361 38141080 -110642392 + L1MB4 LINE L1 5040 5753 -427 1882 146 3 7 chr11 38141080 38141367 -110642105 + AluSx SINE Alu 1 286 -26 3948 159 55 62 chr11 38141367 38141763 -110641709 + L1MB4 LINE L1 5753 6150 -30 327 306 110 32 chr11 38142473 38142692 -110640780 + MIR SINE MIR 8 243 -19 479 298 65 34 chr11 38142993 38143285 -110640187 + L2 LINE L2 3009 3309 -4 2116 218 21 7 chr11 38144017 38144440 -110639032 + MLT1D LTR MaLR 77 505 0 384 317 12 25 chr11 38144549 38144710 -110638762 - L2 LINE L2 0 3313 3155 4106 107 87 27 chr11 38144843 38145320 -110638152 - Tigger3(Golem) DNA MER2_type 0 3028 2494 2143 146 0 7 chr11 38145320 38145629 -110637843 - AluJb SINE Alu -5 307 1 4106 107 87 27 chr11 38145629 38145850 -110637622 - Tigger3(Golem) DNA MER2_type -534 2494 2288 15705 178 27 25 chr11 38145852 38146431 -110637041 - L1MA4 LINE L1 -366 6116 5539 198 0 0 0 chr11 38146441 38146463 -110637009 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2989 88 7 7 chr11 38146463 38146863 -110636609 - L1PA10 LINE L1 -17 6151 5749 15705 178 27 25 chr11 38146863 38151236 -110632236 - L1MA4 LINE L1 -943 5539 1166 2345 94 10 3 chr11 38151236 38151543 -110631929 - AluSp SINE Alu -4 309 1 15705 178 27 25 chr11 38151543 38152711 -110630761 - L1MA4 LINE L1 -5316 1166 1 2910 119 8 30 chr11 38152724 38153193 -110630279 - L1PA15 LINE L1 0 6165 5707 429 218 0 0 chr11 38153194 38153272 -110630200 - Tigger3(Golem) DNA MER2_type -2950 79 2 33 0 0 0 chr11 38153794 38153827 -110629645 + AT_rich Low_complexity Low_complexity 1 33 0 2087 130 14 23 chr11 38154326 38154680 -110628792 - L1MC1 LINE L1 -9 6324 5974 291 252 102 65 chr11 38154709 38155003 -110628469 - L1ME4a LINE L1 -29 6092 5788 443 272 121 0 chr11 38156485 38156658 -110626814 - MIR SINE MIR -49 213 20 547 261 95 27 chr11 38156718 38156911 -110626561 + MIR SINE MIR 4 217 -45 1855 177 7 0 chr11 38156911 38157210 -110626262 + AluJo SINE Alu 5 305 -7 547 261 95 27 chr11 38157210 38157242 -110626230 + MIR SINE MIR 217 245 -17 870 254 58 4 chr11 38157403 38157643 -110625829 - MIR SINE MIR -2 260 8 571 259 118 48 chr11 38157686 38157914 -110625558 - MIR SINE MIR 0 262 19 292 270 11 23 chr11 38157926 38158028 -110625444 + MER5B DNA MER1_type 21 110 -68 201 333 9 18 chr11 38157939 38158053 -110625419 - MER5A DNA MER1_type -22 167 55 * 1671 170 3 60 chr11 38158901 38159219 -110624253 + AluJo SINE Alu 1 300 -12 428 271 28 39 chr11 38160256 38160437 -110623035 - MIR SINE MIR -34 228 50 333 247 0 22 chr11 38161736 38161825 -110621647 + MER103 DNA DNA 2 88 -78 315 352 40 0 chr11 38161947 38162072 -110621400 + L2 LINE L2 3184 3313 0 515 281 92 23 chr11 38164072 38164289 -110619183 + MIR SINE MIR 18 249 -13 351 291 68 73 chr11 38165976 38166049 -110617423 + MIR SINE MIR 20 92 -170 3239 145 35 25 chr11 38166049 38166102 -110617370 - L1MB3 LINE L1 -1 6182 6131 249 57 0 0 chr11 38166102 38166137 -110617335 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2359 72 0 0 chr11 38166137 38166415 -110617057 - AluY SINE Alu -30 281 4 3239 145 35 25 chr11 38166415 38166960 -110616512 - L1MB3 LINE L1 -51 6132 5577 351 291 68 73 chr11 38166960 38167120 -110616352 + MIR SINE MIR 92 252 -10 228 303 0 22 chr11 38167130 38167219 -110616253 + MIR3 SINE MIR 121 207 -1 224 98 0 24 chr11 38169271 38169312 -110614160 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 703 246 113 5 chr11 38170703 38170906 -110612566 - MIR SINE MIR -33 229 5 918 117 11 15 chr11 38170950 38171100 -110612372 + THE1C LTR MaLR 1 121 -254 798 265 55 8 chr11 38171361 38171599 -110611873 + MIR SINE MIR 13 261 -1 439 123 15 0 chr11 38172113 38172178 -110611294 - THE1C LTR MaLR -254 121 56 2049 169 50 92 chr11 38172308 38172894 -110610578 + MER34B LTR ERV1 5 565 0 497 271 136 5 chr11 38173664 38173878 -110609594 + MIR SINE MIR 18 259 -3 316 213 82 41 chr11 38174973 38175095 -110608377 + MIR SINE MIR 75 201 -61 1130 186 151 14 chr11 38175351 38175636 -110607836 + MLT1F LTR MaLR 180 501 -41 1647 190 30 51 chr11 38175636 38175858 -110607614 - MLT1A1 LTR MaLR 0 365 153 1905 184 46 3 chr11 38175858 38176206 -110607266 + MLT1A1 LTR MaLR 3 365 0 1647 190 30 51 chr11 38176206 38176356 -110607116 - MLT1A1 LTR MaLR -212 153 1 577 260 26 0 chr11 38176546 38176700 -110606772 - MLT1L LTR MaLR -5 610 453 25 0 0 0 chr11 38177031 38177056 -110606416 + AT_rich Low_complexity Low_complexity 1 25 0 872 284 125 37 chr11 38177132 38177540 -110605932 - L2 LINE L2 -4 3309 2866 2874 320 53 38 chr11 38177860 38179766 -110603706 + HERVL LTR ERVL 2253 4201 -1284 234 284 0 15 chr11 38179815 38179882 -110603590 - MER5A DNA MER1_type -83 106 41 320 282 29 23 chr11 38181079 38181253 -110602219 + CT-rich Low_complexity Low_complexity 1 175 0 2258 125 0 0 chr11 38181758 38182070 -110601402 - AluSx SINE Alu 0 312 1 346 239 64 18 chr11 38182247 38182356 -110601116 + MIR3 SINE MIR 61 174 -34 427 284 77 64 chr11 38183599 38183926 -110599546 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 38183979 38184256 -110599216 + MLT1F1 LTR MaLR 2 292 -250 2156 190 35 76 chr11 38184271 38184851 -110598621 - MER34B LTR ERV1 -5 560 5 1113 154 65 19 chr11 38184855 38185069 -110598403 + MLT1F1 LTR MaLR 343 566 -1 376 184 0 69 chr11 38185090 38185177 -110598295 + MIR3 SINE MIR 76 156 -52 432 221 107 27 chr11 38185309 38185458 -110598014 - MIR SINE MIR 0 262 102 266 292 29 36 chr11 38186485 38186622 -110596850 + MIR SINE MIR 96 231 -31 593 264 99 33 chr11 38186677 38186889 -110596583 + MIR SINE MIR 37 262 0 28 0 0 0 chr11 38187373 38187401 -110596071 + AT_rich Low_complexity Low_complexity 1 28 0 4961 89 12 6 chr11 38187411 38188074 -110595398 - PABL_B LTR ERV1 0 667 1 593 185 37 0 chr11 38188096 38188204 -110595268 - MER44D DNA MER2_type 0 605 494 195 204 0 0 chr11 38188205 38188249 -110595223 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1121 94 133 109 chr11 38188249 38188484 -110594988 - MER44D DNA MER2_type -1957 534 306 2249 106 38 46 chr11 38188484 38188851 -110594621 + THE1B LTR MaLR 1 364 0 1121 94 133 109 chr11 38188851 38188871 -110594601 - MER44D DNA MER2_type -2185 306 3 2325 105 0 3 chr11 38188981 38189287 -110594185 - AluSg SINE Alu -5 305 1 25 0 0 0 chr11 38190230 38190255 -110593217 + AT_rich Low_complexity Low_complexity 1 25 0 621 240 29 6 chr11 38191207 38191378 -110592094 + MER5B DNA MER1_type 4 178 0 258 32 0 0 chr11 38191930 38191961 -110591511 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6520 88 6 16 chr11 38192058 38193130 -110590342 - L1PA10 LINE L1 -5 6163 5095 520 281 65 19 chr11 38193157 38193541 -110589931 + L2 LINE L2 2595 3059 -213 412 75 0 170 chr11 38194445 38194539 -110588933 - MADE1 DNA Mariner 0 80 3 210 345 55 9 chr11 38194552 38194662 -110588810 + MIR SINE MIR 29 143 -119 457 299 72 12 chr11 38195068 38195235 -110588237 + MER91A DNA MER1_type 1 177 -19 194 167 62 0 chr11 38195243 38195291 -110588181 + L2 LINE L2 3214 3264 -8 454 301 27 7 chr11 38195378 38195524 -110587948 + MIR SINE MIR 2 150 -112 403 209 29 19 chr11 38195705 38195810 -110587662 - MIR SINE MIR -12 250 145 2806 123 16 23 chr11 38197250 38197638 -110585834 + MSTA LTR MaLR 2 388 -40 2899 16 0 0 chr11 38197638 38197951 -110585521 - AluYb8 SINE Alu -5 313 1 2806 123 16 23 chr11 38197951 38197992 -110585480 + MSTA LTR MaLR 388 428 0 243 0 0 0 chr11 38198590 38198617 -110584855 + (TC)n Simple_repeat Simple_repeat 1 27 0 719 253 176 41 chr11 38199267 38199631 -110583841 + MLT1J2 LTR MaLR 34 450 0 988 258 83 67 chr11 38199792 38200312 -110583160 + L1MC4a LINE L1 5297 5555 -745 2382 94 0 0 chr11 38200841 38201148 -110582324 + AluSg SINE Alu 1 307 -3 978 293 68 4 chr11 38201305 38201916 -110581556 - MER115 DNA AcHobo -5 688 1 383 274 0 11 chr11 38203766 38203861 -110579611 - L2 LINE L2 -4 3309 3216 1262 109 0 0 chr11 38203864 38204029 -110579443 + AluSq SINE Alu 9 173 -140 1678 265 150 43 chr11 38204029 38204972 -110578500 - L2 LINE L2 -105 3208 2163 523 203 31 47 chr11 38204973 38205101 -110578371 + MER106B DNA MER1_type 934 1059 0 203 315 144 0 chr11 38205102 38205213 -110578259 - L2 LINE L2 -1477 1837 1711 765 288 9 35 chr11 38205254 38205480 -110577992 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 38205537 38205593 -110577879 + (TA)n Simple_repeat Simple_repeat 1 57 0 333 0 0 0 chr11 38205595 38205632 -110577840 + (CA)n Simple_repeat Simple_repeat 2 38 0 383 306 57 26 chr11 38207489 38207682 -110575790 + MIR SINE MIR 8 206 -56 30 59 0 0 chr11 38208115 38208166 -110575306 + AT_rich Low_complexity Low_complexity 1 51 0 2179 126 0 3 chr11 38209164 38209473 -110573999 + AluJb SINE Alu 1 308 -4 404 238 0 0 chr11 38209886 38209966 -110573506 + L1M1 LINE L1 418 497 -7068 416 277 15 22 chr11 38210021 38210158 -110573314 + L2 LINE L2 3176 3311 -2 374 335 49 57 chr11 38210185 38210430 -110573042 + L2 LINE L2 3028 3270 -2 1493 165 29 25 chr11 38210893 38211172 -110572300 + MER7A DNA MER2_type 1 278 -68 350 349 33 7 chr11 38211271 38211423 -110572049 - MER5A DNA MER1_type 0 189 34 232 194 45 60 chr11 38211423 38211490 -110571982 - MER34 LTR ERV1 -4 538 473 10000 157 206 21 chr11 38211493 38213594 -110569878 + L1MA3 LINE L1 16 2759 -4806 1350 124 29 37 chr11 38213588 38213830 -110569642 + L1MA3 LINE L1 5623 5862 -443 * 1428 122 9 31 chr11 38213831 38214053 -110569419 - THE1B LTR MaLR -1 363 147 1533 145 28 4 chr11 38214053 38214301 -110569171 + L1MA3 LINE L1 2753 3006 -4559 * 6068 139 14 17 chr11 38214297 38214998 -110568474 + L1MA3 LINE L1 6584 7282 -442 2410 129 19 25 chr11 38214998 38215363 -110568109 - THE1B LTR MaLR -1 363 1 6068 139 14 17 chr11 38215363 38215772 -110567700 + L1MA3 LINE L1 7282 7691 -33 698 179 0 0 chr11 38216242 38216365 -110567107 - MER97a DNA MER1_type? -721 173 51 468 221 33 41 chr11 38216429 38216551 -110566921 + L2 LINE L2 3151 3271 -1 657 224 86 0 chr11 38216814 38216988 -110566484 + MER33 DNA MER1_type 30 218 -106 2073 180 9 35 chr11 38217338 38217771 -110565701 - L1MC3 LINE L1 -1 7784 7363 499 103 10 72 chr11 38217772 38217869 -110565603 + MLT1A1 LTR MaLR 2 92 -273 3937 125 35 22 chr11 38217876 38218500 -110564972 - MER39B LTR ERV1 -21 632 1 1316 201 19 22 chr11 38218500 38218767 -110564705 + MLT1A1 LTR MaLR 92 357 -8 1335 164 33 21 chr11 38218982 38219256 -110564216 - L1MC3 LINE L1 -415 7580 7129 210 349 47 12 chr11 38219439 38219525 -110563947 + MIR3 SINE MIR 10 98 -110 358 230 44 62 chr11 38219555 38219668 -110563804 + MIR SINE MIR 33 143 -65 1518 154 47 50 chr11 38220191 38220489 -110562983 - MLT1B LTR MaLR -91 299 3 4420 154 34 73 chr11 38220495 38220561 -110562911 + Charlie1 DNA MER1_type 1812 1879 -882 2136 131 0 3 chr11 38220561 38220852 -110562620 + AluSx SINE Alu 1 290 -22 4420 154 34 73 chr11 38220852 38221298 -110562174 + Charlie1 DNA MER1_type 1879 2341 -420 1670 174 7 14 chr11 38221298 38221579 -110561893 + AluJb SINE Alu 7 285 -27 4420 154 34 73 chr11 38221579 38222018 -110561454 + Charlie1 DNA MER1_type 2341 2727 -34 1617 186 10 7 chr11 38222018 38222324 -110561148 + AluJb SINE Alu 1 307 -5 4420 154 34 73 chr11 38222324 38222358 -110561114 + Charlie1 DNA MER1_type 2727 2761 0 272 305 47 47 chr11 38222358 38222486 -110560986 - L2 LINE L2 -4 3309 3182 8185 22 1 0 chr11 38222491 38223614 -110559858 + L1PA3 LINE L1 5047 6170 0 1324 261 70 60 chr11 38224492 38224654 -110558818 + MLT1E LTR MaLR 1 160 -433 1701 213 63 17 chr11 38224654 38225001 -110558471 + MLT1A1 LTR MaLR 3 365 0 1324 261 70 60 chr11 38225001 38225425 -110558047 + MLT1E LTR MaLR 160 593 0 469 329 60 3 chr11 38226092 38226515 -110556957 - LTR16B LTR ERVL -2 462 1 2048 107 25 4 chr11 38226769 38227049 -110556423 - AluSg SINE Alu -24 286 1 335 306 35 0 chr11 38227755 38227840 -110555632 + MIR SINE MIR 30 117 -91 739 275 130 43 chr11 38227913 38228375 -110555097 - MLT1J LTR MaLR -2 509 8 451 170 10 60 chr11 38230350 38230450 -110553022 + MER5B DNA MER1_type 1 95 -83 2502 148 89 9 chr11 38231631 38232069 -110551403 - L1MC1 LINE L1 -16 6317 5845 1926 168 0 3 chr11 38232219 38232528 -110550944 + AluJb SINE Alu 1 308 -4 1811 151 56 122 chr11 38232633 38233076 -110550396 + MLT2D LTR ERVL 1 414 0 182 235 0 0 chr11 38233256 38233290 -110550182 + MIR SINE MIR 89 122 -86 468 0 0 0 chr11 38235380 38235432 -110548040 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 451 271 154 19 chr11 38235546 38235760 -110547712 - MIR SINE MIR -18 244 2 185 108 27 0 chr11 38235929 38235966 -110547506 + (AACTG)n Simple_repeat Simple_repeat 4 41 0 2239 110 0 22 chr11 38236824 38237141 -110546331 + AluSg SINE Alu 1 310 0 624 85 25 0 chr11 38237141 38237259 -110546213 + (TA)n Simple_repeat Simple_repeat 2 122 0 539 258 60 87 chr11 38237324 38237658 -110545814 + MLT1H LTR MaLR 140 464 -85 2030 178 61 57 chr11 38237860 38238333 -110545139 - MLT1D LTR MaLR -1 504 30 1846 162 7 7 chr11 38238542 38238838 -110544634 - AluJb SINE Alu -14 298 3 7275 195 7 8 chr11 38239446 38240900 -110542572 - L1P5 LINE L1 -1244 4902 3451 3865 117 32 17 chr11 38240899 38241510 -110541962 + L1P5 LINE L1 4912 5512 -639 * 1463 134 0 0 chr11 38241510 38241719 -110541753 - AluSq SINE Alu -5 308 100 3865 117 32 17 chr11 38241719 38241971 -110541501 + L1P5 LINE L1 5512 5796 -355 294 73 0 0 chr11 38241971 38242012 -110541460 + (TG)n Simple_repeat Simple_repeat 2 42 0 3865 117 32 17 chr11 38242012 38242035 -110541437 + L1P5 LINE L1 5796 5817 -334 914 271 78 37 chr11 38242368 38242852 -110540620 + L2 LINE L2 2804 3307 -6 574 162 86 19 chr11 38242887 38242992 -110540480 + MER81 DNA DNA 3 114 0 252 246 0 0 chr11 38243090 38243147 -110540325 + L2 LINE L2 3257 3313 0 502 251 159 43 chr11 38243758 38243839 -110539633 + MIR3 SINE MIR 5 75 -187 1438 190 100 31 chr11 38243839 38244160 -110539312 - MER2 DNA MER2_type 0 344 2 502 251 159 43 chr11 38244160 38244267 -110539205 + MIR3 SINE MIR 75 212 -50 1957 150 0 3 chr11 38245067 38245361 -110538111 + AluJb SINE Alu 1 293 -19 424 231 94 147 chr11 38245598 38245918 -110537554 - MLT1J LTR MaLR -4 507 205 364 300 127 17 chr11 38246041 38246278 -110537194 - MLT1L LTR MaLR -113 502 240 225 211 29 115 chr11 38246316 38246420 -110537052 - MLT1L LTR MaLR -482 133 39 183 278 153 56 chr11 38246423 38246567 -110536905 + MIR SINE MIR 35 192 -70 309 325 109 18 chr11 38247488 38247771 -110535701 + MLT1K LTR MaLR 168 476 -112 2341 63 0 13 chr11 38248047 38248348 -110535124 + AluY SINE Alu 1 297 -14 442 256 70 17 chr11 38249621 38249793 -110533679 + MIR SINE MIR 2 182 -80 192 200 0 0 chr11 38250293 38250333 -110533139 + (CA)n Simple_repeat Simple_repeat 1 40 0 2059 112 7 3 chr11 38251106 38251393 -110532079 + AluJo SINE Alu 3 290 -22 374 289 21 70 chr11 38251660 38251802 -110531670 - MIR SINE MIR -10 252 118 1592 164 0 23 chr11 38252267 38252529 -110530943 + AluSx SINE Alu 43 298 -14 213 290 22 91 chr11 38252741 38252912 -110530560 + MIR SINE MIR 34 192 -70 219 270 95 32 chr11 38253664 38253790 -110529682 + MIR SINE MIR 119 252 -10 243 189 0 0 chr11 38254332 38254385 -110529087 + (CAT)n Simple_repeat Simple_repeat 1 53 0 225 301 0 60 chr11 38255491 38255574 -110527898 - MIR3 SINE MIR -50 158 81 230 311 66 33 chr11 38255583 38255734 -110527738 + L2 LINE L2 2939 3094 -178 475 264 176 0 chr11 38255785 38255967 -110527505 - MIR SINE MIR -46 216 3 719 252 145 12 chr11 38256057 38256285 -110527187 - MLT1L LTR MaLR 0 615 266 502 257 45 17 chr11 38256299 38256478 -110526994 - MLT1L LTR MaLR -297 318 135 1540 201 5 69 chr11 38257235 38257296 -110526176 - MLT1A1 LTR MaLR -11 354 291 1732 139 0 74 chr11 38257296 38257606 -110525866 + AluSx SINE Alu 4 290 -22 542 28 14 0 chr11 38257606 38257678 -110525794 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1540 201 5 69 chr11 38257678 38257703 -110525769 - MLT1A1 LTR MaLR -73 292 267 201 39 0 0 chr11 38257703 38257729 -110525743 + (GA)n Simple_repeat Simple_repeat 2 27 0 1540 201 5 69 chr11 38257729 38258018 -110525454 - MLT1A1 LTR MaLR -98 267 1 191 269 13 13 chr11 38258592 38258670 -110524802 - MIR SINE MIR -38 224 147 618 254 21 0 chr11 38258722 38258864 -110524608 - MIR SINE MIR -105 157 13 386 299 130 0 chr11 38259004 38259181 -110524291 + MIR SINE MIR 53 252 -10 278 299 20 27 chr11 38259205 38259352 -110524120 - MIR SINE MIR -64 198 53 285 248 129 10 chr11 38260259 38260360 -110523112 - L2 LINE L2 -4 3309 3197 205 282 64 0 chr11 38260662 38260740 -110522732 - L2 LINE L2 -19 3294 3212 357 314 0 0 chr11 38261645 38261750 -110521722 + MIR SINE MIR 39 143 -65 219 134 0 60 chr11 38262491 38262558 -110520914 + (AGGGGG)n Simple_repeat Simple_repeat 5 67 0 31 26 0 0 chr11 38262973 38263011 -110520461 + GC_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 38263089 38263118 -110520354 + GC_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 38264940 38264969 -110518503 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 38265050 38265071 -110518401 + AT_rich Low_complexity Low_complexity 1 21 0 233 209 330 0 chr11 38266896 38266987 -110516485 + MIR SINE MIR 88 208 -54 183 42 0 0 chr11 38267050 38267074 -110516398 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 38267332 38267356 -110516116 + AT_rich Low_complexity Low_complexity 1 24 0 301 190 38 25 chr11 38267645 38267724 -110515748 + MIR SINE MIR 161 240 -22 277 282 154 0 chr11 38268346 38268456 -110515016 + MIR3 SINE MIR 32 158 -50 608 274 28 32 chr11 38268464 38268712 -110514760 + MER112 DNA MER1_type 8 254 -6 201 191 0 0 chr11 38268712 38268754 -110514718 + MIR3 SINE MIR 153 194 -14 23 0 0 0 chr11 38269338 38269361 -110514111 + AT_rich Low_complexity Low_complexity 1 23 0 1309 177 28 54 chr11 38269729 38269761 -110513711 - L1MB4 LINE L1 0 6180 6149 2333 99 0 3 chr11 38269761 38270064 -110513408 - AluSx SINE Alu -10 302 1 1309 177 28 54 chr11 38270064 38270348 -110513124 - L1MB4 LINE L1 -31 6149 5872 282 280 13 0 chr11 38270656 38270731 -110512741 - L2 LINE L2 -43 3229 3154 233 292 58 50 chr11 38271280 38271400 -110512072 - MIR SINE MIR -122 140 20 2285 85 3 3 chr11 38271444 38271738 -110511734 - AluY SINE Alu -17 294 1 22 35 0 0 chr11 38271748 38271777 -110511695 + AT_rich Low_complexity Low_complexity 1 29 0 767 189 0 0 chr11 38271833 38271960 -110511512 - FLAM_C SINE Alu -10 133 7 550 269 70 76 chr11 38272012 38272354 -110511118 - L1MEd LINE L1 -4885 1234 895 575 194 26 65 chr11 38272533 38272688 -110510784 - MER53 DNA DNA -13 176 28 1512 242 176 35 chr11 38272747 38273371 -110510101 - L1MEd LINE L1 -5406 713 2 353 354 93 59 chr11 38274779 38275220 -110508252 - L2 LINE L2 -2 3270 2815 789 228 99 26 chr11 38275291 38275524 -110507948 + MIR SINE MIR 10 259 -3 2210 137 103 0 chr11 38275613 38276001 -110507471 + MSTA LTR MaLR 1 428 0 332 185 46 15 chr11 38276128 38276193 -110507279 + AluS SINE Alu 1 67 -236 1588 177 45 24 chr11 38277119 38277407 -110506065 - AluJb SINE Alu -18 294 1 2235 111 3 3 chr11 38277437 38277734 -110505738 + AluSg SINE Alu 1 297 -13 289 232 0 14 chr11 38277879 38277948 -110505524 + LTR67 LTR ERVL 486 553 -4 1007 233 9 9 chr11 38278195 38278405 -110505067 + MER63A DNA MER1_type 1 210 0 427 284 41 78 chr11 38278454 38278603 -110504869 - MIR SINE MIR 0 262 126 2574 71 0 0 chr11 38278603 38278913 -110504559 + AluY SINE Alu 1 310 -1 427 284 41 78 chr11 38278913 38279034 -110504438 - MIR SINE MIR -136 126 2 2234 108 0 7 chr11 38279260 38279557 -110503915 - AluSg SINE Alu -10 300 6 382 285 182 6 chr11 38279568 38279733 -110503739 - MIR SINE MIR 0 262 69 337 289 83 8 chr11 38279760 38279881 -110503591 - MIR SINE MIR -116 146 17 3366 151 22 3 chr11 38280881 38281465 -110502007 + L1MB3 LINE L1 5589 6183 0 281 263 82 0 chr11 38281614 38281718 -110501754 - MIR SINE MIR -62 146 52 851 308 20 0 chr11 38282337 38282587 -110500885 + MIR SINE MIR 8 262 0 22 0 0 0 chr11 38283445 38283467 -110500005 + AT_rich Low_complexity Low_complexity 1 22 0 194 184 0 0 chr11 38283761 38283799 -110499673 - L2 LINE L2 0 3313 3276 2299 94 10 0 chr11 38284456 38284744 -110498728 + AluSg SINE Alu 1 291 -19 349 234 36 63 chr11 38284831 38284942 -110498530 + L1ME LINE L1 5627 5734 -436 1857 166 10 7 chr11 38285041 38285342 -110498130 - AluJo SINE Alu -9 303 2 264 250 0 14 chr11 38285364 38285436 -110498036 + LTR33A LTR ERVL 446 516 -7 207 0 0 0 chr11 38285629 38285652 -110497820 + (TC)n Simple_repeat Simple_repeat 1 23 0 299 336 25 0 chr11 38285902 38286024 -110497448 + L2 LINE L2 3183 3307 -6 604 263 64 6 chr11 38286118 38286289 -110497183 - MIR SINE MIR -3 259 79 752 279 106 0 chr11 38286731 38286957 -110496515 + MIR SINE MIR 2 251 -11 369 277 68 16 chr11 38287895 38288077 -110495395 + MIR SINE MIR 44 234 -28 2094 104 11 7 chr11 38288205 38288484 -110494988 - AluSx SINE Alu -31 281 2 712 202 13 3 chr11 38288513 38288747 -110494725 + AluJo SINE Alu 1 303 -9 366 216 196 0 chr11 38288856 38289004 -110494468 + MER104 DNA MER2_type 4 180 0 25 51 0 0 chr11 38289165 38289204 -110494268 + AT_rich Low_complexity Low_complexity 1 39 0 349 338 41 0 chr11 38289204 38289349 -110494123 + MIR SINE MIR 57 207 -55 1917 166 14 30 chr11 38289556 38289923 -110493549 - MLT1A1 LTR MaLR -4 361 1 1515 213 32 47 chr11 38290211 38290629 -110492843 - MLT1D LTR MaLR -105 400 1 700 259 15 34 chr11 38290647 38290910 -110492562 - MIR SINE MIR 0 262 5 564 284 54 124 chr11 38291050 38291589 -110491883 - MLT1K LTR MaLR -4 584 84 303 86 52 69 chr11 38291635 38291682 -110491790 - MLT1L LTR MaLR -75 540 495 1220 152 65 9 chr11 38291682 38291899 -110491573 - MSTB1 LTR MaLR 0 432 204 312 172 0 0 chr11 38291901 38291959 -110491513 + GA-rich Low_complexity Low_complexity 1 58 0 793 186 45 57 chr11 38291959 38292217 -110491255 - MSTB2 LTR MaLR -201 231 1 786 247 136 38 chr11 38292292 38292608 -110490864 - MLT1L LTR MaLR -223 392 46 647 289 117 18 chr11 38292877 38293150 -110490322 + MLT1H LTR MaLR 1 300 -249 638 273 45 23 chr11 38293354 38293574 -110489898 + MLT1H LTR MaLR 331 555 0 423 312 43 14 chr11 38293574 38293712 -110489760 - MIR3 SINE MIR -42 166 25 1822 157 16 35 chr11 38293734 38294052 -110489420 + AluJo SINE Alu 1 312 0 694 276 46 42 chr11 38294126 38294387 -110489085 - MIR SINE MIR 0 262 1 221 221 15 44 chr11 38294797 38294865 -110488607 + GA-rich Low_complexity Low_complexity 4 69 0 570 288 8 0 chr11 38294950 38295082 -110488390 - MER94 DNA DNA 0 134 2 242 202 64 85 chr11 38295133 38295227 -110488245 - L2 LINE L2 -42 3230 3139 210 305 29 9 chr11 38295281 38295386 -110488086 - L2 LINE L2 -270 3002 2896 23 0 0 0 chr11 38295517 38295540 -110487932 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr11 38295802 38295829 -110487643 + (GA)n Simple_repeat Simple_repeat 2 28 0 2128 113 3 49 chr11 38296012 38296339 -110487133 - AluSx SINE Alu 0 312 1 47 19 0 0 chr11 38296607 38296661 -110486811 + AT_rich Low_complexity Low_complexity 1 54 0 267 306 98 29 chr11 38296855 38297028 -110486444 - L2 LINE L2 -456 2858 2674 2228 89 3 7 chr11 38297162 38297483 -110485989 - AluSc SINE Alu 0 320 1 387 293 131 20 chr11 38297930 38298282 -110485190 + L1ME LINE L1 4942 5332 -814 322 229 101 0 chr11 38298322 38298431 -110485041 + L1ME LINE L1 5395 5514 -650 27 29 0 0 chr11 38298660 38298694 -110484778 + AT_rich Low_complexity Low_complexity 1 34 0 259 310 0 0 chr11 38298789 38298860 -110484612 - tRNA-Thr-ACA tRNA tRNA -3 73 3 308 230 58 11 chr11 38300064 38300151 -110483321 + MIR SINE MIR 45 135 -73 807 114 98 15 chr11 38300421 38300553 -110482919 + MER39B LTR ERV1 1 143 -510 1267 82 6 6 chr11 38300553 38300724 -110482748 - AluSp SINE Alu -17 296 126 3004 148 20 26 chr11 38300724 38300984 -110482488 + MER39B LTR ERV1 151 408 -245 4015 101 20 0 chr11 38300984 38301527 -110481945 - MER41A LTR ERV1 0 554 1 3004 148 20 26 chr11 38301527 38301772 -110481700 + MER39B LTR ERV1 408 653 0 326 267 11 0 chr11 38301826 38301916 -110481556 + MLT-int LTR MaLR 32 122 -1613 2131 88 4 0 chr11 38301924 38302196 -110481276 + AluSp SINE Alu 2 274 -39 1072 269 26 3 chr11 38302214 38302523 -110480949 + MLT1F-int LTR MaLR 291 606 -765 315 293 83 38 chr11 38302739 38302896 -110480576 + MLT1F-int LTR MaLR 715 878 -493 2382 90 0 7 chr11 38303194 38303494 -110479978 - AluSx SINE Alu -14 298 1 504 264 54 20 chr11 38303607 38303755 -110479717 + MLT1F-int LTR MaLR 1219 1371 0 2270 218 81 8 chr11 38303755 38304260 -110479212 + MLT1F LTR MaLR 1 542 0 2074 140 0 0 chr11 38304416 38304709 -110478763 + AluSx SINE Alu 1 293 -19 1944 131 19 22 chr11 38304917 38305230 -110478242 + AluJb SINE Alu 1 312 0 424 272 33 72 chr11 38306030 38306210 -110477262 - MIR SINE MIR -72 190 18 25 0 0 0 chr11 38306953 38306978 -110476494 + GC_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr11 38307011 38307061 -110476411 + GC_rich Low_complexity Low_complexity 1 50 0 505 296 11 11 chr11 38307525 38307775 -110475697 + GA-rich Low_complexity Low_complexity 1 250 0 202 225 18 153 chr11 38307995 38308106 -110475366 + MIR SINE MIR 23 118 -90 212 234 273 0 chr11 38308566 38308643 -110474829 + L2 LINE L2 3216 3313 0 236 270 16 71 chr11 38308970 38309096 -110474376 - L1ME3 LINE L1 -89 6056 5938 1686 243 73 19 chr11 38309183 38309772 -110473700 - L1ME3 LINE L1 -265 5888 5268 2001 123 40 17 chr11 38309785 38310085 -110473387 - AluSx SINE Alu -5 307 1 363 227 125 16 chr11 38310120 38310248 -110473224 - L1ME3 LINE L1 -905 5224 5083 1284 284 106 20 chr11 38310252 38310815 -110472657 - L1ME3 LINE L1 -1147 4982 4469 856 199 32 0 chr11 38310815 38310971 -110472501 + FRAM SINE Alu 1 161 -5 1284 284 106 20 chr11 38310971 38311474 -110471998 - L1ME3 LINE L1 -1660 4469 3824 1537 182 7 18 chr11 38311575 38311850 -110471622 - AluJo SINE Alu -20 292 21 419 269 48 70 chr11 38311989 38312301 -110471171 - L1ME3 LINE L1 -2323 3806 3502 3832 92 5 4 chr11 38312392 38312945 -110470527 - L1PA11 LINE L1 0 6174 5621 404 292 0 23 chr11 38312964 38313135 -110470337 - L1ME3 LINE L1 -2646 3483 3317 278 259 62 45 chr11 38313354 38313466 -110470006 - L1ME3 LINE L1 -5478 641 528 2061 126 0 11 chr11 38313654 38313976 -110469496 - AluSq SINE Alu 0 319 1 2057 136 3 3 chr11 38313998 38314320 -110469152 - AluSx SINE Alu 0 312 1 357 225 45 9 chr11 38314483 38314594 -110468878 - L1MD3 LINE L1 -155 7840 7726 * 613 185 0 8 chr11 38314585 38314715 -110468757 - L1MC3 LINE L1 -314 7471 7343 244 202 164 39 chr11 38314715 38314819 -110468653 - L1MC3 LINE L1 -1902 5906 5790 495 272 139 11 chr11 38315263 38315443 -110468029 - L2 LINE L2 0 3313 3111 490 280 78 16 chr11 38315473 38315666 -110467806 + MIR SINE MIR 58 262 0 511 226 107 79 chr11 38316348 38316600 -110466872 + MER112 DNA MER1_type 2 260 0 437 278 147 28 chr11 38317253 38317505 -110465967 - L2 LINE L2 -62 3251 2970 281 310 0 0 chr11 38318400 38318487 -110464985 + (TG)n Simple_repeat Simple_repeat 2 88 0 246 267 155 26 chr11 38318882 38318998 -110464474 - L2 LINE L2 -5 3308 3178 332 360 70 0 chr11 38319256 38319370 -110464102 + L2 LINE L2 3122 3243 -29 919 252 78 87 chr11 38319517 38319774 -110463698 - MLT1J LTR MaLR -37 474 221 1889 99 0 0 chr11 38319774 38320017 -110463455 - AluSc SINE Alu -66 243 1 919 252 78 87 chr11 38320017 38320232 -110463240 - MLT1J LTR MaLR -290 221 6 738 299 14 0 chr11 38320249 38320463 -110463009 + MIR SINE MIR 46 262 0 577 274 130 9 chr11 38321199 38321429 -110462043 - MIR SINE MIR -3 259 2 39 22 0 0 chr11 38321579 38321625 -110461847 + AT_rich Low_complexity Low_complexity 1 46 0 282 269 77 0 chr11 38321709 38321813 -110461659 - MIR SINE MIR 0 262 151 661 295 183 38 chr11 38321870 38322580 -110460892 - L2 LINE L2 0 3313 2497 192 68 45 23 chr11 38322777 38322821 -110460651 + C-rich Low_complexity Low_complexity 1 45 0 1656 160 48 0 chr11 38322829 38323097 -110460375 - AluSx SINE Alu -31 281 1 970 264 32 38 chr11 38323694 38324009 -110459463 - MER102a DNA MER1_type 0 330 18 611 257 7 7 chr11 38324026 38324166 -110459306 - MIR3 SINE MIR -48 160 21 414 284 40 44 chr11 38324617 38324842 -110458630 - L1MC4a LINE L1 -1902 5906 5683 227 277 72 12 chr11 38324907 38324990 -110458482 - L1MC4a LINE L1 -596 5570 5483 217 298 123 18 chr11 38325251 38325365 -110458107 + MIR SINE MIR 53 178 -84 1102 84 0 0 chr11 38326150 38326292 -110457180 - AluSg/x SINE Alu -6 306 165 567 285 62 60 chr11 38326315 38326684 -110456788 + MER115 DNA AcHobo 133 502 -191 21 36 0 0 chr11 38327934 38327962 -110455510 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 37 0 chr11 38328027 38328108 -110455364 - L2 LINE L2 -52 3220 3137 933 230 59 14 chr11 38328142 38328342 -110455130 - MIR SINE MIR -26 236 24 799 191 181 35 chr11 38328342 38328624 -110454848 + MER33 DNA MER1_type 1 323 -1 933 230 59 14 chr11 38328624 38328645 -110454827 - MIR SINE MIR -238 24 5 505 314 101 14 chr11 38328666 38328873 -110454599 - MIR SINE MIR -13 249 25 539 179 0 0 chr11 38328895 38328979 -110454493 - FRAM/FAM SINE Alu -95 81 1 22 35 0 0 chr11 38329046 38329075 -110454397 + AT_rich Low_complexity Low_complexity 1 29 0 2322 70 0 0 chr11 38329868 38330154 -110453318 - AluSg SINE Alu -19 291 6 228 35 0 0 chr11 38330554 38330583 -110452889 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 206 316 0 0 chr11 38330598 38330655 -110452817 - MIR SINE MIR -7 255 199 817 121 50 111 chr11 38330655 38330744 -110452728 - L1MB3 LINE L1 -8 6175 6103 2183 129 0 3 chr11 38330744 38331055 -110452417 - AluSx SINE Alu -2 310 1 817 121 50 111 chr11 38331055 38331163 -110452309 - L1MB3 LINE L1 -80 6103 5990 355 315 148 6 chr11 38331172 38331334 -110452138 - MIR SINE MIR -74 188 4 258 200 207 7 chr11 38332578 38332713 -110450759 - L1ME4a LINE L1 -1 6120 5959 911 215 16 0 chr11 38332887 38333073 -110450399 - MER5A DNA MER1_type 0 189 1 304 292 208 25 chr11 38334922 38335124 -110448348 - MIR SINE MIR -18 244 6 2001 124 39 28 chr11 38335611 38335836 -110447636 - MER47A DNA MER2_type -1957 366 134 2313 108 0 3 chr11 38335836 38336143 -110447329 - AluY SINE Alu -5 306 1 2001 124 39 28 chr11 38336143 38336279 -110447193 - MER47A DNA MER2_type -2189 134 1 193 359 108 24 chr11 38336361 38336528 -110446944 - MER5A DNA MER1_type 0 189 9 1047 174 108 0 chr11 38336599 38336811 -110446661 - MER46A DNA MER2_type -1 235 1 2150 87 204 22 chr11 38336821 38336841 -110446631 - MER57B LTR ERV1 0 434 419 2477 79 3 0 chr11 38336841 38337146 -110446326 + AluY SINE Alu 1 306 -5 2150 87 204 22 chr11 38337146 38337492 -110445980 - MER57B LTR ERV1 -15 419 1 1409 88 118 25 chr11 38337492 38337730 -110445742 - MER57B-int LTR ERV1 0 7537 7278 703 115 25 8 chr11 38337733 38337855 -110445617 - LTR54B LTR ERV1 -370 128 5 16069 102 59 42 chr11 38337855 38337986 -110445486 - MER57B-int LTR ERV1 -387 7150 7023 185 258 0 32 chr11 38337986 38338048 -110445424 + L3 LINE CR1 1065 1124 -453 16069 102 59 42 chr11 38338048 38340335 -110443137 - MER57B-int LTR ERV1 -514 7023 4776 2238 74 7 20 chr11 38340335 38340632 -110442840 - AluY SINE Alu -10 301 9 16069 102 59 42 chr11 38340632 38340765 -110442707 - MER57B-int LTR ERV1 -2761 4776 4647 2177 107 3 7 chr11 38340765 38341056 -110442416 + AluSc SINE Alu 1 290 -19 201 39 0 0 chr11 38341060 38341086 -110442386 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 16069 102 59 42 chr11 38341086 38341265 -110442207 - MER57B-int LTR ERV1 -2892 4645 4305 3144 37 3 0 chr11 38341265 38341647 -110441825 - L1PA4 LINE L1 -3 6152 5770 5979 24 0 7 chr11 38341647 38342357 -110441115 - L1PA4 LINE L1 0 6155 5451 5580 26 10 5 chr11 38342357 38343467 -110440005 - L1PA4 LINE L1 -374 5781 4668 * 6991 39 7 0 chr11 38343459 38344352 -110439120 + L1PA4 LINE L1 3798 4696 -1450 3589 163 72 57 chr11 38344352 38345393 -110438079 - MER57B-int LTR ERV1 -3233 4304 3248 747 103 27 55 chr11 38345380 38345526 -110437946 - MER57B-int LTR ERV1 -4615 2922 2781 * 567 157 61 26 chr11 38345522 38345637 -110437835 - MER57B-int LTR ERV1 -4908 2629 2511 * 3472 146 40 8 chr11 38345639 38346419 -110437053 - MER57B-int LTR ERV1 -4231 3585 648 42305 37 3 2 chr11 38346977 38353122 -110430350 + L1PA3 LINE L1 13 6154 -1 1181 94 0 0 chr11 38353195 38353355 -110430117 - MER57B-int LTR ERV1 -6585 952 793 * 4058 145 24 1 chr11 38353353 38354014 -110429458 - MER57B-int LTR ERV1 -6860 677 2 2991 108 9 0 chr11 38354015 38354442 -110429030 - MER57B LTR ERV1 0 434 4 3048 128 68 18 chr11 38354570 38355116 -110428356 - MER34C LTR ERV1 -12 573 1 1512 161 17 10 chr11 38355124 38355422 -110428050 + L1MB8 LINE L1 5877 6176 -2 441 219 30 112 chr11 38355596 38355765 -110427707 + MIR SINE MIR 64 218 -44 1153 168 0 16 chr11 38355776 38355961 -110427511 + AluJb SINE Alu 108 289 -23 21 0 0 0 chr11 38357265 38357286 -110426186 + AT_rich Low_complexity Low_complexity 1 21 0 325 209 23 35 chr11 38357493 38357579 -110425893 - MIR SINE MIR -109 153 69 312 321 74 33 chr11 38358458 38358673 -110424799 - MIR SINE MIR -29 233 10 321 82 0 0 chr11 38359597 38359646 -110423826 + (TG)n Simple_repeat Simple_repeat 2 50 0 2662 109 64 7 chr11 38359851 38360255 -110423217 - MSTA LTR MaLR 0 428 2 704 295 62 5 chr11 38360981 38361205 -110422267 + MIR SINE MIR 15 251 -11 1316 165 12 31 chr11 38361622 38361876 -110421596 + LTR8 LTR ERV1 443 691 0 378 295 104 49 chr11 38361923 38362106 -110421366 + MIR3 SINE MIR 15 207 -1 279 65 87 0 chr11 38362544 38362590 -110420882 - MADE1 DNA Mariner 0 80 31 5324 186 53 27 chr11 38362613 38365105 -110418367 - L1MC1 LINE L1 -5 6328 3783 2093 128 14 0 chr11 38365105 38365402 -110418070 - AluSx SINE Alu -11 301 1 5324 186 53 27 chr11 38365402 38365458 -110418014 - L1MC1 LINE L1 -2550 3783 3730 312 215 149 8 chr11 38365493 38365614 -110417858 - L1ME4a LINE L1 -16 6105 5968 3819 97 16 2 chr11 38366517 38367063 -110416409 - MER41A LTR ERV1 0 554 1 493 196 0 15 chr11 38367192 38367325 -110416147 + CT-rich Low_complexity Low_complexity 2 132 0 206 221 104 52 chr11 38367427 38367504 -110415968 + MIR3 SINE MIR 108 188 -20 280 288 0 0 chr11 38368580 38368653 -110414819 + MIR3 SINE MIR 121 193 -15 409 350 68 16 chr11 38368953 38369252 -110414220 + L1MC4a LINE L1 5462 5785 -2023 393 58 0 0 chr11 38369252 38369304 -110414168 + (CA)n Simple_repeat Simple_repeat 2 53 0 409 350 68 16 chr11 38369304 38369370 -110414102 + L1MC4a LINE L1 5785 5846 -1962 271 228 0 25 chr11 38369433 38369512 -110413960 + L1ME4a LINE L1 5932 6008 -113 2146 117 0 7 chr11 38369534 38369834 -110413638 - AluSx SINE Alu -14 298 1 1919 142 20 13 chr11 38371076 38371379 -110412093 + AluJo SINE Alu 1 305 -7 409 306 145 32 chr11 38371812 38371998 -110411474 - MIR SINE MIR -51 211 5 2112 119 0 3 chr11 38372242 38372535 -110410937 + AluSx SINE Alu 1 292 -20 301 272 35 0 chr11 38372931 38373045 -110410427 - L1MC4 LINE L1 -1 8041 7924 680 303 32 25 chr11 38373118 38373399 -110410073 + L1MDa LINE L1 20 302 -6238 625 204 47 17 chr11 38373866 38374038 -110409434 + L1MDa LINE L1 908 1084 -5459 669 208 0 0 chr11 38374071 38374196 -110409276 + AluJb SINE Alu 179 303 -9 1840 193 111 31 chr11 38374196 38374817 -110408655 + L1MDa LINE L1 1098 1768 -4772 530 210 75 9 chr11 38374836 38375050 -110408422 - L1M4 LINE L1 -1621 4525 4298 570 51 26 0 chr11 38375050 38375128 -110408344 - Alu SINE Alu -12 300 221 2611 233 48 3 chr11 38375129 38375813 -110407659 - L1M4 LINE L1 -1833 4313 3599 395 344 72 79 chr11 38376688 38376993 -110406479 - L2 LINE L2 -33 3239 2937 460 325 51 47 chr11 38377231 38377486 -110405986 - MIR SINE MIR 0 262 7 21 36 0 0 chr11 38377645 38377673 -110405799 + AT_rich Low_complexity Low_complexity 1 28 0 690 311 13 17 chr11 38378450 38378688 -110404784 - MIR SINE MIR -14 248 12 189 0 0 0 chr11 38378693 38378714 -110404758 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 491 287 16 8 chr11 38379040 38379162 -110404310 - MIR SINE MIR -69 139 17 728 353 21 25 chr11 38381066 38381349 -110402123 - L2 LINE L2 -1 3271 2990 433 367 38 9 chr11 38381388 38381598 -110401874 - L2 LINE L2 -464 2850 2635 791 187 0 15 chr11 38381600 38381734 -110401738 + FLAM_A SINE Alu 2 133 0 2282 109 0 10 chr11 38381752 38382065 -110401407 + AluSq SINE Alu 1 310 -3 765 228 124 39 chr11 38383361 38383594 -110399878 - MIR SINE MIR 0 262 10 1945 103 15 0 chr11 38384056 38384318 -110399154 + AluSc SINE Alu 36 301 -8 405 276 8 55 chr11 38384818 38384945 -110398527 + MIR SINE MIR 20 140 -68 394 254 95 24 chr11 38385973 38386099 -110397373 - L2 LINE L2 0 3272 3138 1713 177 0 41 chr11 38386118 38386441 -110397031 - AluJb SINE Alu 0 311 1 209 259 19 0 chr11 38386503 38386557 -110396915 - MIR SINE MIR -17 245 191 185 105 0 26 chr11 38386557 38386595 -110396877 + (TA)n Simple_repeat Simple_repeat 2 38 0 548 98 66 30 chr11 38386623 38387028 -110396444 + (TTATA)n Simple_repeat Simple_repeat 1 419 0 660 238 40 7 chr11 38387045 38387196 -110396276 - MIR SINE MIR -105 157 2 332 220 144 8 chr11 38387862 38387980 -110395492 + MER112 DNA MER1_type 121 254 -6 480 221 53 0 chr11 38388011 38388106 -110395366 - MER91B DNA MER1_type 0 190 91 326 256 33 50 chr11 38388129 38388250 -110395222 - MER91B DNA MER1_type -70 120 2 475 147 21 173 chr11 38388386 38388503 -110394969 - MER53 DNA DNA 0 189 110 864 151 29 0 chr11 38388503 38388675 -110394797 + L1MA7 LINE L1 6104 6280 -11 475 147 21 173 chr11 38388675 38388748 -110394724 - MER53 DNA DNA -79 110 28 5870 83 97 0 chr11 38388750 38389657 -110393815 - L1PA11 LINE L1 0 6174 5211 2072 138 41 17 chr11 38389687 38390181 -110393291 - MER6A DNA MER2_type 0 605 1 231 36 0 0 chr11 38390642 38390670 -110392802 + (T)n Simple_repeat Simple_repeat 1 28 0 502 295 34 43 chr11 38391482 38391689 -110391783 - MIR SINE MIR -56 206 2 390 206 159 0 chr11 38392637 38392744 -110390728 - MIR SINE MIR -67 195 72 429 297 17 0 chr11 38393316 38393434 -110390038 - L2 LINE L2 -3 3310 3191 1835 158 7 0 chr11 38393604 38393896 -110389576 + AluSx SINE Alu 1 294 -18 445 279 27 9 chr11 38394343 38394454 -110389018 - L2 LINE L2 -3 3310 3198 337 250 43 9 chr11 38394684 38394800 -110388672 - MER103 DNA DNA -46 120 1 318 200 40 13 chr11 38395261 38395336 -110388136 + L2 LINE L2 3196 3272 0 195 211 96 0 chr11 38395715 38395767 -110387705 + MIR SINE MIR 106 162 -100 302 264 77 51 chr11 38396069 38396232 -110387240 - MIR SINE MIR -37 171 6 665 303 51 73 chr11 38396232 38396644 -110386828 + L2 LINE L2 2344 2746 -568 504 311 84 15 chr11 38396817 38397205 -110386267 + L2 LINE L2 2793 3261 -52 185 309 136 37 chr11 38397289 38397451 -110386021 + MIR SINE MIR 41 218 -44 1670 128 0 13 chr11 38397930 38398165 -110385307 - AluSg SINE Alu -15 295 64 556 140 19 28 chr11 38398165 38398272 -110385200 + AluSg/x SINE Alu 203 308 -4 204 240 20 0 chr11 38398272 38398322 -110385150 - MIR SINE MIR -14 248 198 41663 45 3 0 chr11 38398706 38404844 -110378628 - L1PA4 LINE L1 0 6155 1 2813 153 31 24 chr11 38404865 38405439 -110378033 - L1MA8 LINE L1 -3 6288 5711 993 241 13 30 chr11 38405709 38405945 -110377527 - MIR SINE MIR -2 260 29 531 248 8 168 chr11 38406905 38407143 -110376329 + MIR SINE MIR 2 201 -61 245 279 44 0 chr11 38407141 38407209 -110376263 - L2 LINE L2 0 3313 3243 * 512 283 49 11 chr11 38407197 38407381 -110376091 - MLT1I LTR MaLR -24 385 195 459 275 47 62 chr11 38407628 38407821 -110375651 + MIR3 SINE MIR 19 208 0 21 36 0 0 chr11 38409340 38409368 -110374104 + AT_rich Low_complexity Low_complexity 1 28 0 210 353 191 15 chr11 38409402 38409538 -110373934 - L2 LINE L2 -1 3271 3112 195 129 0 0 chr11 38409941 38409972 -110373500 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 271 284 129 26 chr11 38410885 38411001 -110372471 + MIR SINE MIR 19 146 -62 236 128 0 21 chr11 38411782 38411829 -110371643 + MER63 DNA MER1_type 34 79 -982 316 284 21 60 chr11 38411875 38412080 -110371392 + MIR SINE MIR 20 258 -4 486 290 67 76 chr11 38412427 38412665 -110370807 - MIR SINE MIR -18 244 9 1039 289 36 30 chr11 38413055 38413391 -110370081 + MER102b DNA MER1_type 4 341 0 334 329 44 13 chr11 38413778 38413936 -110369536 + MIR SINE MIR 100 262 0 191 328 0 16 chr11 38413926 38413990 -110369482 + L2 LINE L2 3210 3272 0 * 5748 106 25 13 chr11 38414099 38414888 -110368584 - L1PA16 LINE L1 -1 6165 5387 2023 118 105 12 chr11 38414888 38415211 -110368261 + THE1A LTR MaLR 1 353 -2 12450 81 7 27 chr11 38415213 38415649 -110367823 + THE1A-int LTR MaLR 1 444 -1136 2118 122 0 3 chr11 38415649 38415944 -110367528 + AluSg SINE Alu 7 300 -10 12450 81 7 27 chr11 38415944 38417118 -110366354 + THE1A-int LTR MaLR 444 1580 0 2444 100 14 11 chr11 38417120 38417470 -110366002 + THE1A LTR MaLR 5 355 0 5748 106 25 13 chr11 38417470 38417684 -110365788 - L1PA16 LINE L1 -779 5387 5147 * 41014 68 11 3 chr11 38417671 38423775 -110359697 - L1PA5 LINE L1 -1 6153 1 2457 199 21 30 chr11 38423782 38424339 -110359133 - L1PA16 LINE L1 -973 5173 4622 248 290 121 16 chr11 38424759 38424883 -110358589 - MIR SINE MIR -70 192 56 691 243 91 69 chr11 38425045 38425420 -110358052 - L2 LINE L2 0 3313 2931 370 344 19 94 chr11 38426175 38426536 -110356936 - L2 LINE L2 -1 3271 2938 262 293 93 84 chr11 38426751 38426966 -110356506 - MLT1L LTR MaLR -205 410 194 252 293 57 57 chr11 38427074 38427197 -110356275 - MIR SINE MIR -61 201 79 574 247 62 81 chr11 38427249 38427492 -110355980 - MIR SINE MIR -24 238 6 227 95 48 0 chr11 38428793 38428835 -110354637 + (TATG)n Simple_repeat Simple_repeat 2 45 0 261 258 90 0 chr11 38430417 38430506 -110352966 - MIR SINE MIR -82 180 84 324 238 38 0 chr11 38430804 38430884 -110352588 + MIR SINE MIR 92 174 -88 347 292 46 15 chr11 38433682 38433812 -110349660 - MIR SINE MIR -109 153 20 362 338 116 28 chr11 38435756 38436110 -110347362 + L2 LINE L2 2843 3268 -4 513 265 151 29 chr11 38436194 38436272 -110347200 + L2 LINE L2 2996 3063 -250 180 0 0 0 chr11 38436272 38436292 -110347180 + (CA)n Simple_repeat Simple_repeat 2 21 0 513 265 151 29 chr11 38436292 38436492 -110346980 + L2 LINE L2 3063 3308 -5 445 230 50 43 chr11 38436512 38436651 -110346821 - MIR SINE MIR -116 146 7 201 307 159 23 chr11 38436837 38436925 -110346547 - L2 LINE L2 -39 3233 3134 2319 100 0 0 chr11 38437421 38437720 -110345752 + AluSx SINE Alu 1 299 -13 314 281 124 38 chr11 38437957 38438142 -110345330 + MIR SINE MIR 36 236 -26 285 323 98 23 chr11 38438174 38438307 -110345165 - MIR SINE MIR -108 154 12 866 297 194 11 chr11 38438970 38439682 -110343790 - L2 LINE L2 0 3313 2478 248 289 156 33 chr11 38439935 38440025 -110343447 + MIR SINE MIR 36 136 -72 616 221 107 99 chr11 38440034 38440287 -110343185 - MIR SINE MIR -3 259 5 2445 122 188 169 chr11 38441212 38441521 -110341951 + L1MC3 LINE L1 6761 7063 -722 284 300 8 25 chr11 38441521 38441641 -110341831 + MLT1F1 LTR MaLR 8 125 -442 2445 122 188 169 chr11 38441641 38442074 -110341398 + L1MC3 LINE L1 7063 7638 -147 2226 91 3 16 chr11 38442074 38442592 -110340880 - MER4A LTR ERV1 0 664 1 674 169 92 0 chr11 38442592 38442722 -110340750 + L1MC3 LINE L1 7635 7776 -9 315 269 188 43 chr11 38442795 38443119 -110340353 + L1ME4a LINE L1 5680 6050 -71 556 268 166 19 chr11 38443788 38443993 -110339479 + MIR SINE MIR 28 262 0 3931 76 362 2 chr11 38444197 38444804 -110338668 - LTR12 LTR ERV1 0 826 1 422 227 53 30 chr11 38446033 38446165 -110337307 - Charlie2a DNA MER1_type -11 2851 2717 932 180 0 17 chr11 38446181 38446359 -110337113 - Charlie2a DNA MER1_type -1206 1656 1482 868 240 19 39 chr11 38446546 38446804 -110336668 - Charlie2a DNA MER1_type -2527 255 3 291 279 26 65 chr11 38447017 38447171 -110336301 + L3 LINE CR1 1231 1378 -199 370 246 172 8 chr11 38447234 38447356 -110336116 - MIR SINE MIR -82 180 39 24 0 0 0 chr11 38447439 38447463 -110336009 + AT_rich Low_complexity Low_complexity 1 24 0 1950 128 35 3 chr11 38447622 38447911 -110335561 + AluSg SINE Alu 1 298 -12 300 367 75 0 chr11 38448202 38448322 -110335150 + L2 LINE L2 3139 3267 -5 401 255 184 10 chr11 38449261 38449457 -110334015 + MIR SINE MIR 33 262 0 332 251 140 41 chr11 38449807 38449978 -110333494 - L2 LINE L2 -14 3299 3112 627 332 43 17 chr11 38450247 38450479 -110332993 - MIR SINE MIR -23 239 2 21 57 0 0 chr11 38451841 38451876 -110331596 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr11 38452380 38452404 -110331068 + (A)n Simple_repeat Simple_repeat 1 24 0 206 244 0 0 chr11 38454035 38454076 -110329396 + (CATA)n Simple_repeat Simple_repeat 2 42 0 222 270 146 0 chr11 38456017 38456106 -110327366 - MIR SINE MIR -76 132 31 359 288 70 53 chr11 38456622 38456845 -110326627 - MIR SINE MIR -21 241 5 300 222 28 0 chr11 38460934 38461006 -110322466 + MIR SINE MIR 183 256 -6 311 288 92 61 chr11 38461469 38461632 -110321840 + MIR3 SINE MIR 35 202 -6 242 204 0 0 chr11 38461703 38461752 -110321720 + (TG)n Simple_repeat Simple_repeat 1 49 0 2817 102 70 5 chr11 38461829 38462231 -110321241 + MSTA LTR MaLR 1 428 0 503 237 0 35 chr11 38462248 38462362 -110321110 + MER103 DNA DNA 2 111 -55 305 282 78 19 chr11 38462423 38462526 -110320946 - MIR3 SINE MIR -39 169 61 229 109 43 0 chr11 38462766 38462812 -110320660 + CT-rich Low_complexity Low_complexity 1 48 0 603 280 80 15 chr11 38464459 38464659 -110318813 + MIR SINE MIR 48 260 -2 407 273 35 14 chr11 38464733 38464876 -110318596 + L1ME LINE L1 5627 5772 -349 2222 106 0 7 chr11 38465811 38466113 -110317359 + AluSx SINE Alu 1 300 -12 418 278 97 7 chr11 38467045 38467189 -110316283 - MIR SINE MIR -45 217 61 416 268 128 0 chr11 38467539 38467703 -110315769 - MIR SINE MIR -68 194 10 273 235 122 20 chr11 38468233 38468331 -110315141 + MLT1L LTR MaLR 105 212 -403 307 264 193 36 chr11 38468528 38468668 -110314804 - MIR SINE MIR -79 183 22 497 302 71 42 chr11 38469235 38469447 -110314025 + L2 LINE L2 3055 3272 0 421 253 102 66 chr11 38470137 38470303 -110313169 + MIR SINE MIR 15 186 -76 206 255 0 39 chr11 38470568 38470619 -110312853 + MIR SINE MIR 23 71 -191 235 290 29 0 chr11 38470619 38470688 -110312784 - MER81 DNA DNA 0 114 44 22 0 0 0 chr11 38471544 38471566 -110311906 + AT_rich Low_complexity Low_complexity 1 22 0 2277 92 0 0 chr11 38471646 38471949 -110311523 + AluSx SINE Alu 1 303 0 387 137 0 129 chr11 38471992 38472116 -110311356 - Charlie7 DNA MER1_type -32 2580 2473 251 231 192 0 chr11 38472142 38472220 -110311252 - Charlie7 DNA MER1_type -2514 98 6 * 268 260 4 4 chr11 38472214 38472304 -110311168 - Charlie8 DNA MER1_type -991 1426 1366 722 261 5 21 chr11 38472361 38472549 -110310923 - Charlie8 DNA MER1_type -2145 272 88 441 291 202 5 chr11 38472634 38472837 -110310635 + MIR SINE MIR 20 262 0 499 283 50 17 chr11 38473064 38473244 -110310228 + MIR SINE MIR 4 189 -73 2837 210 73 53 chr11 38473336 38474125 -110309347 - MER21B LTR ERV1 -44 819 15 1335 224 60 72 chr11 38474153 38474640 -110308832 + LTR33 LTR ERVL 41 521 0 374 361 16 0 chr11 38474826 38474948 -110308524 - L2 LINE L2 -3 3269 3146 510 275 146 41 chr11 38475145 38475509 -110307963 + MLT1J LTR MaLR 201 602 -13 350 245 51 20 chr11 38475515 38475613 -110307859 - MIR3 SINE MIR -27 181 81 227 149 0 21 chr11 38476107 38476154 -110307318 + (CA)n Simple_repeat Simple_repeat 1 46 0 1950 166 65 39 chr11 38476295 38476452 -110307020 + MLT1A1 LTR MaLR 2 154 -211 2213 103 3 3 chr11 38476452 38476754 -110306718 + AluSg SINE Alu 1 302 -8 1950 166 65 39 chr11 38476754 38476951 -110306521 + MLT1A1 LTR MaLR 154 365 0 1260 209 125 70 chr11 38477390 38477878 -110305594 + MLT1H LTR MaLR 5 519 -30 685 303 43 0 chr11 38477900 38478108 -110305364 - MIR SINE MIR -12 250 34 2165 114 92 25 chr11 38478225 38478541 -110304931 + MER1B DNA MER1_type 1 337 0 1205 276 89 64 chr11 38478623 38479276 -110304196 + L2 LINE L2 2458 3107 -206 1704 111 8 0 chr11 38479283 38479526 -110303946 - AluSx SINE Alu -4 308 64 2191 90 11 0 chr11 38479851 38480128 -110303344 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 38480130 38480150 -110303322 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 231 226 19 0 chr11 38480550 38480603 -110302869 - L2 LINE L2 -2 3270 3217 189 74 0 0 chr11 38480892 38480919 -110302553 + (T)n Simple_repeat Simple_repeat 1 27 0 197 283 50 0 chr11 38481790 38481850 -110301622 + MIR SINE MIR 121 183 -79 1140 211 125 14 chr11 38482184 38482683 -110300789 + MLT1E2 LTR MaLR 8 626 0 623 303 91 0 chr11 38482742 38482950 -110300522 + MIR SINE MIR 23 249 -13 1648 119 128 62 chr11 38483108 38483180 -110300292 - THE1C LTR MaLR 0 375 309 2295 129 0 0 chr11 38483180 38483490 -110299982 + AluSx SINE Alu 1 310 -2 1648 119 128 62 chr11 38483490 38483769 -110299703 - THE1C LTR MaLR -66 309 1 295 151 27 27 chr11 38484007 38484080 -110299392 - L1ME4a LINE L1 -114 6007 5935 1374 197 151 3 chr11 38484265 38484569 -110298903 - MLT1D LTR MaLR 0 505 157 438 274 27 7 chr11 38485179 38485325 -110298147 - MIR SINE MIR 0 262 114 1064 196 0 0 chr11 38485410 38485573 -110297899 + FAM SINE Alu 1 163 -12 423 250 83 30 chr11 38485634 38485802 -110297670 - L1MC4a LINE L1 -1938 5870 5694 180 0 0 0 chr11 38486329 38486349 -110297123 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2312 80 7 10 chr11 38486349 38486639 -110296833 - AluSx SINE Alu -21 291 1 230 210 177 0 chr11 38486912 38486974 -110296498 - MLT1L LTR MaLR -77 538 466 468 179 0 63 chr11 38486989 38487084 -110296388 - L1MC4a LINE L1 -2177 5631 5543 2764 263 72 25 chr11 38487114 38488003 -110295469 + L1MC4a LINE L1 5256 6205 -1603 1727 160 3 35 chr11 38488003 38488321 -110295151 + AluJo SINE Alu 5 312 0 2764 263 72 25 chr11 38488321 38488498 -110294974 + L1MC4a LINE L1 6205 6372 -1436 919 265 71 48 chr11 38488511 38488847 -110294625 - MLT1I LTR MaLR -2 407 64 270 207 0 17 chr11 38489090 38489148 -110294324 + HERVL LTR ERVL 1863 1919 -3735 * 1208 307 21 50 chr11 38489147 38489531 -110293941 + HERVL LTR ERVL 2120 2458 -3196 1019 309 80 37 chr11 38489691 38489800 -110293672 - ERVL LTR ERVL -2156 3608 3505 2362 93 0 22 chr11 38489800 38490113 -110293359 - AluSc SINE Alu -3 306 1 1019 309 80 37 chr11 38490113 38490488 -110292984 - ERVL LTR ERVL -2259 3505 3103 333 265 66 42 chr11 38490527 38490693 -110292779 + HERVL LTR ERVL 3677 3846 -1918 334 270 35 26 chr11 38490779 38490894 -110292578 - ERVL LTR ERVL -1063 4701 4586 251 358 30 15 chr11 38490946 38491080 -110292392 + HERVL LTR ERVL 4386 4521 -964 801 184 0 8 chr11 38491185 38491310 -110292162 - AluSg1 SINE Alu -184 125 2 2368 75 6 12 chr11 38491310 38491642 -110291830 - L1M1 LINE L1 -4549 3016 2687 7903 28 1 0 chr11 38491693 38493218 -110290254 - L1PA3 LINE L1 0 6155 4627 4134 53 4 0 chr11 38493218 38493726 -110289746 + L1PA8A LINE L1 5361 5870 -261 638 300 111 25 chr11 38496240 38496979 -110286493 - L1M4 LINE L1 -3262 3120 2333 635 246 81 122 chr11 38497269 38498190 -110285282 - HAL1 LINE L1 -761 1746 863 577 216 36 30 chr11 38498634 38498801 -110284671 - MER53 DNA DNA 0 189 22 266 167 56 28 chr11 38499028 38499100 -110284372 - AluSp SINE Alu -127 176 103 13113 161 41 24 chr11 38499100 38501513 -110281959 - L1M1 LINE L1 -3912 3653 1200 6242 83 2 2 chr11 38501616 38502467 -110281005 + L1P LINE L1 4161 5011 -1135 4328 199 32 31 chr11 38502466 38503406 -110280066 + L1M1 LINE L1 12 952 -6613 * 1349 107 46 53 chr11 38503406 38503668 -110279804 + THE1C LTR MaLR 1 260 -115 2644 73 3 58 chr11 38503771 38504152 -110279320 + THE1A-int LTR MaLR 1221 1580 0 2444 100 14 11 chr11 38504154 38504504 -110278968 + THE1A LTR MaLR 5 355 0 968 188 25 5 chr11 38504510 38504707 -110278765 - L1P LINE L1 -786 5360 5160 18239 41 4 0 chr11 38504707 38507575 -110275897 - L1PA5 LINE L1 -3 6151 3275 14784 68 8 12 chr11 38507675 38510742 -110272730 - L1PA5 LINE L1 -3059 3087 15 428 275 98 50 chr11 38511031 38511369 -110272103 - L1ME LINE L1 -518 5635 5282 1900 141 40 17 chr11 38511398 38511695 -110271777 - AluSx SINE Alu -8 304 1 225 236 126 8 chr11 38511730 38511857 -110271615 - L1ME LINE L1 -905 5224 5083 1278 284 106 20 chr11 38511861 38512424 -110271048 - L1ME LINE L1 -1147 4982 4469 856 199 32 0 chr11 38512424 38512580 -110270892 + FRAM SINE Alu 1 161 -5 1278 284 106 20 chr11 38512580 38513083 -110270389 - L1ME LINE L1 -1660 4469 3824 1537 182 7 18 chr11 38513184 38513459 -110270013 - AluJo SINE Alu -20 292 21 418 269 48 70 chr11 38513598 38513910 -110269562 - L1ME LINE L1 -2323 3806 3502 3832 92 5 4 chr11 38514001 38514554 -110268918 - L1PA11 LINE L1 0 6174 5621 404 292 0 23 chr11 38514573 38514744 -110268728 - L1ME LINE L1 -2646 3483 3317 278 259 62 45 chr11 38514963 38515075 -110268397 - L1ME LINE L1 -5478 641 528 2061 126 0 11 chr11 38515263 38515589 -110267883 - AluSq SINE Alu 0 323 1 2068 133 3 3 chr11 38515611 38515933 -110267539 - AluSx SINE Alu 0 312 1 357 225 45 9 chr11 38516096 38516207 -110267265 - L1MD3 LINE L1 -155 7840 7726 * 613 185 0 8 chr11 38516198 38516328 -110267144 - L1MC3 LINE L1 -314 7471 7343 244 202 164 39 chr11 38516328 38516432 -110267040 - L1MC3 LINE L1 -1902 5906 5790 495 272 139 11 chr11 38516876 38517056 -110266416 - L2 LINE L2 0 3313 3111 490 280 78 16 chr11 38517086 38517279 -110266193 + MIR SINE MIR 58 262 0 511 226 107 79 chr11 38517961 38518213 -110265259 + MER112 DNA MER1_type 2 260 0 455 273 149 25 chr11 38518875 38519117 -110264355 - L2 LINE L2 -72 3241 2970 204 40 0 0 chr11 38520042 38520067 -110263405 + (TG)n Simple_repeat Simple_repeat 2 26 0 246 267 155 26 chr11 38520498 38520614 -110262858 - L2 LINE L2 -5 3308 3178 332 360 70 0 chr11 38520872 38520986 -110262486 + L2 LINE L2 3122 3243 -29 511 270 155 13 chr11 38521133 38521359 -110262113 - MLT1J LTR MaLR -37 474 217 1876 103 0 0 chr11 38521390 38521633 -110261839 - AluSc SINE Alu -66 243 1 197 410 0 0 chr11 38521872 38521955 -110261517 - MIR3 SINE MIR -8 200 118 243 0 0 0 chr11 38522272 38522299 -110261173 + (TC)n Simple_repeat Simple_repeat 1 27 0 650 257 135 33 chr11 38523010 38523313 -110260159 + MLT1J2 LTR MaLR 113 450 0 845 257 83 69 chr11 38523499 38523994 -110259478 + L1MC4a LINE L1 5326 5827 -1981 2361 94 0 0 chr11 38524523 38524830 -110258642 + AluSg SINE Alu 1 307 -3 889 295 68 4 chr11 38524987 38525598 -110257874 - MER115 DNA AcHobo -5 688 1 385 274 0 11 chr11 38527447 38527542 -110255930 - L2 LINE L2 -4 3309 3216 1259 109 0 0 chr11 38527545 38527710 -110255762 + AluSq SINE Alu 9 173 -140 1665 263 151 44 chr11 38527710 38528653 -110254819 - L2 LINE L2 -105 3208 2163 470 203 31 47 chr11 38528654 38528782 -110254690 + MER106A DNA MER1_type 111 236 0 207 315 144 0 chr11 38528783 38528894 -110254578 - L2 LINE L2 -1477 1837 1711 775 288 9 35 chr11 38528935 38529161 -110254311 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 38529218 38529274 -110254198 + (TA)n Simple_repeat Simple_repeat 1 57 0 279 0 0 0 chr11 38529276 38529307 -110254165 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 306 57 26 chr11 38531164 38531357 -110252115 + MIR SINE MIR 8 206 -56 25 31 0 0 chr11 38531810 38531842 -110251630 + AT_rich Low_complexity Low_complexity 1 32 0 2180 126 0 3 chr11 38532840 38533149 -110250323 + AluJb SINE Alu 1 308 -4 379 238 0 0 chr11 38533562 38533642 -110249830 + L1M1 LINE L1 418 497 -7068 421 277 15 22 chr11 38533697 38533834 -110249638 + L2 LINE L2 3176 3311 -2 383 335 49 57 chr11 38533861 38534106 -110249366 + L2 LINE L2 3028 3270 -2 493 193 9 37 chr11 38534570 38534679 -110248793 + MER7A DNA MER2_type 1 104 -242 4375 153 46 10 chr11 38534936 38535827 -110247645 - Tigger3b DNA MER2_type -1 1230 308 1383 167 0 9 chr11 38535845 38536061 -110247411 - AluJb SINE Alu -15 297 84 965 171 271 4 chr11 38536062 38536313 -110247159 - Tigger3b DNA MER2_type -913 318 1 10788 70 7 11 chr11 38536483 38538058 -110245414 + L1P LINE L1 3110 4677 -1469 234 229 14 14 chr11 38538676 38538746 -110244726 + MLT1K LTR MaLR 11 80 -508 380 214 51 8 chr11 38539029 38539146 -110244326 + MLT1K LTR MaLR 467 588 0 22 0 0 0 chr11 38539440 38539462 -110244010 + AT_rich Low_complexity Low_complexity 1 22 0 2272 153 33 19 chr11 38539879 38540298 -110243174 + MSTB1 LTR MaLR 8 432 0 290 345 146 12 chr11 38540316 38540487 -110242985 + MIR SINE MIR 48 241 -21 301 316 21 21 chr11 38591038 38591133 -110192339 + MIR SINE MIR 55 149 -113 3489 68 9 0 chr11 38591427 38591865 -110191607 + L1PB1 LINE L1 5709 6150 -1 614 244 120 19 chr11 38591890 38592099 -110191373 - MIR SINE MIR -24 238 9 2264 110 0 10 chr11 38592142 38592452 -110191020 + AluSq SINE Alu 1 307 -6 2171 122 0 28 chr11 38593601 38593922 -110189550 - AluSx SINE Alu 0 312 1 2287 212 10 21 chr11 38594126 38594645 -110188827 - L1P LINE L1 -1012 5134 4622 248 290 121 16 chr11 38595065 38595189 -110188283 - MIR SINE MIR -70 192 56 691 243 91 69 chr11 38595351 38595726 -110187746 - L2 LINE L2 0 3313 2931 370 344 19 94 chr11 38596481 38596842 -110186630 - L2 LINE L2 -1 3271 2938 262 293 93 84 chr11 38597057 38597272 -110186200 - MLT1L LTR MaLR -205 410 194 252 293 57 57 chr11 38597380 38597503 -110185969 - MIR SINE MIR -61 201 79 574 247 62 81 chr11 38597555 38597798 -110185674 - MIR SINE MIR -24 238 6 227 95 48 0 chr11 38599099 38599141 -110184331 + (TATG)n Simple_repeat Simple_repeat 2 45 0 261 258 90 0 chr11 38600723 38600812 -110182660 - MIR SINE MIR -82 180 84 324 238 38 0 chr11 38601110 38601190 -110182282 + MIR SINE MIR 92 174 -88 347 292 46 15 chr11 38603988 38604118 -110179354 - MIR SINE MIR -109 153 20 362 338 116 28 chr11 38606062 38606416 -110177056 + L2 LINE L2 2843 3268 -4 513 265 151 29 chr11 38606500 38606578 -110176894 + L2 LINE L2 2996 3063 -250 180 0 0 0 chr11 38606578 38606598 -110176874 + (CA)n Simple_repeat Simple_repeat 2 21 0 513 265 151 29 chr11 38606598 38606798 -110176674 + L2 LINE L2 3063 3308 -5 445 230 50 43 chr11 38606818 38606957 -110176515 - MIR SINE MIR -116 146 7 201 307 159 23 chr11 38607143 38607231 -110176241 - L2 LINE L2 -39 3233 3134 2319 100 0 0 chr11 38607727 38608026 -110175446 + AluSx SINE Alu 1 299 -13 314 281 124 38 chr11 38608263 38608448 -110175024 + MIR SINE MIR 36 236 -26 285 323 98 23 chr11 38608480 38608613 -110174859 - MIR SINE MIR -108 154 12 866 297 194 11 chr11 38609276 38609988 -110173484 - L2 LINE L2 0 3313 2478 248 289 156 33 chr11 38610241 38610331 -110173141 + MIR SINE MIR 36 136 -72 616 221 107 99 chr11 38610340 38610593 -110172879 - MIR SINE MIR -3 259 5 2416 123 188 169 chr11 38611518 38611827 -110171645 + L1MC3 LINE L1 6761 7063 -722 280 300 8 25 chr11 38611827 38611947 -110171525 + MLT1F1 LTR MaLR 8 125 -442 2416 123 188 169 chr11 38611947 38612380 -110171092 + L1MC3 LINE L1 7063 7638 -147 2223 91 3 16 chr11 38612380 38612898 -110170574 - MER4A LTR ERV1 0 664 1 666 169 92 0 chr11 38612898 38613028 -110170444 + L1MC3 LINE L1 7635 7776 -9 284 269 188 43 chr11 38613101 38613425 -110170047 + L1ME4a LINE L1 5680 6050 -71 495 268 166 19 chr11 38614094 38614299 -110169173 + MIR SINE MIR 28 262 0 3684 76 362 2 chr11 38614503 38615110 -110168362 - LTR12 LTR ERV1 0 826 1 412 242 45 23 chr11 38616339 38616471 -110167001 - Charlie2a DNA MER1_type -11 2851 2717 917 180 0 17 chr11 38616487 38616665 -110166807 - Charlie2a DNA MER1_type -1206 1656 1482 861 240 19 39 chr11 38616852 38617110 -110166362 - Charlie2a DNA MER1_type -2527 255 3 257 281 27 62 chr11 38617331 38617477 -110165995 + L3 LINE CR1 1238 1378 -199 324 245 21 11 chr11 38617568 38617662 -110165810 - MIR SINE MIR -129 133 39 24 0 0 0 chr11 38617745 38617769 -110165703 + AT_rich Low_complexity Low_complexity 1 24 0 1965 128 35 3 chr11 38617928 38618217 -110165255 + AluSg SINE Alu 1 298 -12 265 367 75 0 chr11 38618508 38618628 -110164844 + L2 LINE L2 3139 3267 -5 342 228 185 12 chr11 38619601 38619763 -110163709 + MIR SINE MIR 73 262 0 287 251 140 41 chr11 38620113 38620284 -110163188 - L2 LINE L2 -14 3299 3112 559 332 43 17 chr11 38620553 38620785 -110162687 - MIR SINE MIR -23 239 2 21 57 0 0 chr11 38622147 38622182 -110161290 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr11 38622686 38622710 -110160762 + (A)n Simple_repeat Simple_repeat 1 24 0 206 244 0 0 chr11 38624341 38624382 -110159090 + (CATA)n Simple_repeat Simple_repeat 2 42 0 192 270 146 0 chr11 38626323 38626412 -110157060 - MIR SINE MIR -76 132 31 300 293 127 10 chr11 38626928 38627133 -110156339 - MIR SINE MIR -21 241 13 280 222 28 0 chr11 38631240 38631312 -110152160 + MIR SINE MIR 183 256 -6 267 288 92 61 chr11 38631775 38631938 -110151534 + MIR3 SINE MIR 35 202 -6 242 204 0 0 chr11 38632009 38632058 -110151414 + (TG)n Simple_repeat Simple_repeat 1 49 0 2656 102 70 5 chr11 38632135 38632537 -110150935 + MSTA LTR MaLR 1 428 0 499 237 0 35 chr11 38632554 38632668 -110150804 + MER103 DNA DNA 2 111 -55 272 282 78 19 chr11 38632729 38632832 -110150640 - MIR3 SINE MIR -39 169 61 229 109 43 0 chr11 38633072 38633118 -110150354 + CT-rich Low_complexity Low_complexity 1 48 0 543 280 80 15 chr11 38634765 38634965 -110148507 + MIR SINE MIR 48 260 -2 399 273 35 14 chr11 38635039 38635182 -110148290 + L1ME LINE L1 5627 5772 -349 2242 106 0 7 chr11 38636117 38636419 -110147053 + AluSx SINE Alu 1 300 -12 378 257 48 3 chr11 38637351 38637495 -110145977 - MIR SINE MIR -45 217 61 367 246 127 0 chr11 38637845 38637987 -110145485 - MIR SINE MIR -68 194 35 281 235 122 20 chr11 38638539 38638637 -110144835 + MLT1L LTR MaLR 105 212 -403 269 264 193 36 chr11 38638834 38638974 -110144498 - MIR SINE MIR -79 183 22 454 306 31 25 chr11 38639588 38639748 -110143724 + L2 LINE L2 3106 3266 -6 371 253 102 66 chr11 38640443 38640609 -110142863 + MIR SINE MIR 15 186 -76 186 255 0 39 chr11 38640874 38640925 -110142547 + MIR SINE MIR 23 71 -191 239 290 29 0 chr11 38640925 38640994 -110142478 - MER81 DNA DNA 0 114 44 22 0 0 0 chr11 38641850 38641872 -110141600 + AT_rich Low_complexity Low_complexity 1 22 0 2304 92 0 0 chr11 38641952 38642273 -110141199 + AluSx SINE Alu 1 321 0 374 137 0 129 chr11 38642316 38642440 -110141032 - Charlie7 DNA MER1_type -32 2580 2473 248 231 192 0 chr11 38642466 38642544 -110140928 - Charlie7 DNA MER1_type -2514 98 6 * 272 260 4 4 chr11 38642538 38642628 -110140844 - Charlie8 DNA MER1_type -991 1426 1366 717 261 5 21 chr11 38642685 38642873 -110140599 - Charlie8 DNA MER1_type -2156 261 77 378 291 202 5 chr11 38642958 38643161 -110140311 + MIR SINE MIR 20 262 0 460 238 17 7 chr11 38643415 38643568 -110139904 + MIR SINE MIR 34 189 -73 2829 210 73 53 chr11 38643660 38644449 -110139023 - MER21B LTR ERV1 -44 819 15 1359 222 60 72 chr11 38644477 38644964 -110138508 + LTR33 LTR ERVL 41 521 0 334 361 16 0 chr11 38645150 38645272 -110138200 - L2 LINE L2 -3 3269 3146 506 277 137 26 chr11 38645469 38645833 -110137639 + MLT1J LTR MaLR 201 602 -13 318 245 51 20 chr11 38645839 38645937 -110137535 - MIR3 SINE MIR -27 181 81 227 149 0 21 chr11 38646431 38646478 -110136994 + (CA)n Simple_repeat Simple_repeat 1 46 0 1835 166 65 39 chr11 38646619 38646776 -110136696 + MLT1A1 LTR MaLR 2 154 -211 2236 103 3 3 chr11 38646776 38647078 -110136394 + AluSg SINE Alu 1 302 -8 1835 166 65 39 chr11 38647078 38647275 -110136197 + MLT1A1 LTR MaLR 154 365 0 1278 217 125 70 chr11 38647714 38648202 -110135270 + MLT1H LTR MaLR 5 519 -30 624 303 43 0 chr11 38648224 38648432 -110135040 - MIR SINE MIR -12 250 34 2033 114 92 25 chr11 38648549 38648865 -110134607 + MER1B DNA MER1_type 1 337 0 1060 284 79 67 chr11 38648947 38649600 -110133872 + L2 LINE L2 2458 3107 -206 1733 107 8 0 chr11 38649607 38649850 -110133622 - AluSx SINE Alu -4 308 64 2215 90 11 0 chr11 38650174 38650451 -110133021 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 38650453 38650473 -110132999 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 215 226 19 0 chr11 38650873 38650926 -110132546 - L2 LINE L2 -2 3270 3217 189 74 0 0 chr11 38651215 38651242 -110132230 + (T)n Simple_repeat Simple_repeat 1 27 0 182 283 50 0 chr11 38652113 38652173 -110131299 + MIR SINE MIR 121 183 -79 1140 209 122 15 chr11 38652507 38653006 -110130466 + MLT1E2 LTR MaLR 8 626 0 562 303 91 0 chr11 38653065 38653273 -110130199 + MIR SINE MIR 23 249 -13 1523 119 128 62 chr11 38653431 38653503 -110129969 - THE1C LTR MaLR 0 375 309 2310 129 0 0 chr11 38653503 38653813 -110129659 + AluSx SINE Alu 1 310 -2 1523 119 128 62 chr11 38653813 38654092 -110129380 - THE1C LTR MaLR -66 309 1 288 151 27 27 chr11 38654330 38654403 -110129069 - L1ME4a LINE L1 -114 6007 5935 1374 197 151 3 chr11 38654588 38654892 -110128580 - MLT1D LTR MaLR 0 505 157 399 274 27 7 chr11 38655502 38655648 -110127824 - MIR SINE MIR 0 262 114 1003 196 0 0 chr11 38655733 38655896 -110127576 + FAM SINE Alu 1 163 -12 407 250 83 30 chr11 38655957 38656125 -110127347 - L1MC4a LINE L1 -1938 5870 5694 180 0 0 0 chr11 38656652 38656672 -110126800 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2336 80 7 10 chr11 38656672 38656962 -110126510 - AluSx SINE Alu -21 291 1 230 210 177 0 chr11 38657235 38657297 -110126175 - MLT1L LTR MaLR -77 538 466 467 179 0 63 chr11 38657312 38657407 -110126065 - L1MC4a LINE L1 -2177 5631 5543 2689 263 72 25 chr11 38657437 38658326 -110125146 + L1MC4a LINE L1 5256 6205 -1603 1736 160 3 35 chr11 38658326 38658644 -110124828 + AluJo SINE Alu 5 312 0 2689 263 72 25 chr11 38658644 38658821 -110124651 + L1MC4a LINE L1 6205 6372 -1436 907 265 74 51 chr11 38658834 38659170 -110124302 - MLT1I LTR MaLR -2 407 64 271 207 0 17 chr11 38659413 38659471 -110124001 + HERVL LTR ERVL 1863 1919 -3735 * 1202 307 21 50 chr11 38659470 38659854 -110123618 + HERVL LTR ERVL 2120 2458 -3196 1017 309 80 37 chr11 38660014 38660123 -110123349 - ERVL LTR ERVL -2156 3608 3505 2375 93 0 22 chr11 38660123 38660436 -110123036 - AluSc SINE Alu -3 306 1 1017 309 80 37 chr11 38660436 38660811 -110122661 - ERVL LTR ERVL -2259 3505 3103 338 265 66 42 chr11 38660850 38661016 -110122456 + HERVL LTR ERVL 3677 3846 -1918 342 270 35 26 chr11 38661102 38661217 -110122255 - ERVL LTR ERVL -1063 4701 4586 765 318 101 22 chr11 38661269 38661766 -110121706 + HERVL LTR ERVL 4428 4963 -801 1828 217 111 102 chr11 38662616 38663701 -110119771 + L1MC5 LINE L1 6768 7861 -100 411 204 66 122 chr11 38663743 38663939 -110119533 + LTR33A LTR ERVL 7 191 -332 2131 156 34 5 chr11 38663977 38664199 -110119273 - MLT1B LTR MaLR 0 390 151 1855 138 3 38 chr11 38664199 38664518 -110118954 + AluJb SINE Alu 5 312 0 2131 156 34 5 chr11 38664518 38664674 -110118798 - MLT1B LTR MaLR -239 151 1 1025 194 66 5 chr11 38664675 38664886 -110118586 - MER58A DNA MER1_type 0 224 1 543 259 37 16 chr11 38664922 38665111 -110118361 + LTR33 LTR ERVL 327 519 -2 2518 68 0 10 chr11 38665161 38665471 -110118001 + AluY SINE Alu 1 307 -4 2142 107 4 4 chr11 38665480 38665761 -110117711 + AluSx SINE Alu 1 281 -31 405 0 0 0 chr11 38665767 38665812 -110117660 + (TAA)n Simple_repeat Simple_repeat 2 46 0 290 294 0 0 chr11 38667147 38667232 -110116240 - L2 LINE L2 -2 3270 3186 284 263 17 42 chr11 38667259 38667377 -110116095 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 1672 108 0 33 chr11 38667640 38667880 -110115592 - AluSg/x SINE Alu -11 301 70 1031 99 0 0 chr11 38667981 38668112 -110115360 - AluSg SINE Alu -179 131 1 2063 114 7 4 chr11 38668136 38668444 -110115028 + AluSx SINE Alu 1 309 0 271 167 90 135 chr11 38668553 38668685 -110114787 + LTR33A LTR ERVL 86 210 -313 586 163 0 0 chr11 38668685 38668777 -110114695 - MER58B DNA MER1_type 0 341 250 395 290 48 21 chr11 38668784 38668929 -110114543 + MIR SINE MIR 70 218 -44 1331 151 19 0 chr11 38669067 38669273 -110114199 - MER2 DNA MER2_type -135 210 1 519 199 6 12 chr11 38670827 38670998 -110112474 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 469 246 0 11 chr11 38671052 38671231 -110112241 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 268 238 19 0 chr11 38671245 38671350 -110112122 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 971 254 14 5 chr11 38671397 38671617 -110111855 + Charlie8 DNA MER1_type 51 272 -2145 1807 216 25 8 chr11 38671726 38672083 -110111389 - MLT1A1 LTR MaLR -2 363 1 313 292 39 52 chr11 38672383 38672537 -110110935 + L2 LINE L2 2932 3083 -189 291 235 51 20 chr11 38672727 38672825 -110110647 - MER91C DNA MER1_type -13 127 27 494 287 55 42 chr11 38673928 38674165 -110109307 + MLT1K LTR MaLR 98 337 -251 844 173 60 0 chr11 38674357 38674507 -110108965 - AluJ SINE Alu -23 289 131 207 0 0 0 chr11 38674514 38674537 -110108935 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2030 109 50 0 chr11 38674548 38674831 -110108641 - AluSx SINE Alu -15 297 1 815 134 0 0 chr11 38676245 38676357 -110107115 - AluJ SINE Alu -185 127 16 22 0 0 0 chr11 38676768 38676790 -110106682 + AT_rich Low_complexity Low_complexity 1 22 0 692 297 108 20 chr11 38677608 38677951 -110105521 + L2 LINE L2 2847 3219 -94 5917 79 5 17 chr11 38677951 38678762 -110104710 - L1PA13 LINE L1 -2 6161 5361 443 257 0 9 chr11 38678762 38678867 -110104605 + L2 LINE L2 3210 3313 0 360 299 58 14 chr11 38678860 38679071 -110104401 + MIR SINE MIR 8 227 -35 * 4205 42 4 2 chr11 38679184 38679688 -110103784 + L1PA5 LINE L1 5649 6153 -1 213 290 16 0 chr11 38679898 38679960 -110103512 + (CA)n Simple_repeat Simple_repeat 2 64 0 374 288 90 40 chr11 38680484 38680646 -110102826 + MIR SINE MIR 19 189 -73 364 295 45 9 chr11 38680646 38680758 -110102714 + MER91C DNA MER1_type 1 116 -24 248 269 0 0 chr11 38680775 38680842 -110102630 + MIR SINE MIR 188 254 -8 1830 151 26 26 chr11 38680894 38681206 -110102266 + AluSx SINE Alu 1 312 0 263 333 19 28 chr11 38681561 38681669 -110101803 + HAL1 LINE L1 359 465 -2042 542 260 119 74 chr11 38681761 38682073 -110101399 + HAL1 LINE L1 589 914 -1593 209 108 27 0 chr11 38682090 38682127 -110101345 + GA-rich Low_complexity Low_complexity 3 40 0 1407 151 0 0 chr11 38682169 38682375 -110101097 + AluSg/x SINE Alu 90 295 -17 2336 92 0 0 chr11 38682379 38682672 -110100800 + AluY SINE Alu 1 293 -18 1130 262 108 52 chr11 38682702 38683630 -110099842 + HAL1 LINE L1 987 1969 -538 207 0 0 0 chr11 38684413 38684436 -110099036 + (T)n Simple_repeat Simple_repeat 1 23 0 769 261 102 33 chr11 38684492 38684914 -110098558 + HAL1 LINE L1 2057 2507 0 750 244 91 22 chr11 38684921 38685241 -110098231 - L1ME4a LINE L1 -12 6109 5768 1122 255 81 22 chr11 38685603 38686050 -110097422 + MLT1K LTR MaLR 1 473 -3 1975 139 0 33 chr11 38686371 38686674 -110096798 - AluSx SINE Alu -19 293 1 320 264 55 0 chr11 38686710 38686822 -110096650 - L1ME4a LINE L1 -326 5795 5691 245 203 78 0 chr11 38686840 38686904 -110096568 + MER69B DNA AcHobo 6 74 -1152 3053 238 80 5 chr11 38686935 38687759 -110095713 + MER69B DNA AcHobo 340 1225 -1 689 239 80 19 chr11 38687770 38687983 -110095489 + MIR SINE MIR 22 247 -15 2308 115 0 0 chr11 38687990 38688295 -110095177 - AluSx SINE Alu -7 305 1 228 317 70 0 chr11 38688312 38688454 -110095018 - L1ME4a LINE L1 -443 5678 5527 457 80 0 136 chr11 38688773 38688819 -110094653 - MADE1 DNA Mariner -4 76 46 2410 102 0 0 chr11 38688819 38689132 -110094340 + AluSq SINE Alu 1 313 0 457 80 0 136 chr11 38689132 38689173 -110094299 - MADE1 DNA Mariner -34 46 1 227 239 28 0 chr11 38690041 38690112 -110093360 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 2007 114 0 46 chr11 38690413 38690719 -110092753 + AluSc SINE Alu 6 297 -12 23 0 0 0 chr11 38691287 38691310 -110092162 + AT_rich Low_complexity Low_complexity 1 23 0 230 301 106 8 chr11 38692134 38692257 -110091215 - L2 LINE L2 -497 2817 2683 268 217 178 39 chr11 38692313 38692543 -110090929 + L1ME4a LINE L1 5822 6083 -38 1459 188 28 35 chr11 38692558 38692671 -110090801 + AluJb SINE Alu 1 113 -208 1752 140 91 23 chr11 38692671 38693022 -110090450 + THE1C LTR MaLR 1 375 0 1459 188 28 35 chr11 38693022 38693231 -110090241 + AluJb SINE Alu 113 321 0 310 324 72 14 chr11 38693286 38693425 -110090047 - MIR SINE MIR -109 153 7 1728 232 96 8 chr11 38693458 38693958 -110089514 - L1ME2 LINE L1 -36 6197 5654 439 211 0 53 chr11 38693961 38694056 -110089416 + MER21B LTR ERV1 1 90 -773 2791 224 71 52 chr11 38694063 38694885 -110088587 + MER21B LTR ERV1 23 841 -22 2097 209 88 104 chr11 38694908 38695357 -110088115 - L1ME2 LINE L1 -585 5648 5193 327 49 0 0 chr11 38695357 38695398 -110088074 + (TG)n Simple_repeat Simple_repeat 2 42 0 2066 118 11 0 chr11 38695398 38695677 -110087795 - AluSg SINE Alu -28 282 1 2097 209 88 104 chr11 38695677 38696027 -110087445 - L1ME2 LINE L1 -1039 5194 4840 739 148 0 0 chr11 38696027 38696175 -110087297 + AluSg/x SINE Alu 170 317 0 2097 209 88 104 chr11 38696175 38696583 -110086889 - L1ME2 LINE L1 -1393 4840 4347 1846 265 87 15 chr11 38696583 38697330 -110086142 - L1ME2 LINE L1 -2320 3895 3095 5527 146 20 40 chr11 38697356 38697949 -110085523 - L1MA7 LINE L1 -9 6282 5679 2376 97 3 0 chr11 38697949 38698259 -110085213 - AluY SINE Alu 0 311 1 5527 146 20 40 chr11 38698259 38698490 -110084982 - L1MA7 LINE L1 -612 5679 5445 375 23 0 0 chr11 38698500 38698544 -110084928 + (TG)n Simple_repeat Simple_repeat 1 44 0 2193 113 3 0 chr11 38698544 38698824 -110084648 - AluSx SINE Alu -28 284 1 5527 146 20 40 chr11 38698824 38699499 -110083973 - L1MA7 LINE L1 -846 5445 4810 4298 267 52 56 chr11 38699490 38699729 -110083743 - L1ME2 LINE L1 -3108 3107 2869 * 2385 97 0 7 chr11 38699729 38700039 -110083433 + AluSg1 SINE Alu 1 308 -1 4298 267 52 56 chr11 38700039 38700232 -110083240 - L1ME2 LINE L1 -3346 2869 2677 2133 125 3 7 chr11 38700232 38700536 -110082936 + AluSx SINE Alu 1 303 -9 4298 267 52 56 chr11 38700536 38702931 -110080541 - L1ME2 LINE L1 -3538 2677 334 2292 97 0 3 chr11 38702931 38703230 -110080242 + AluSg SINE Alu 1 298 -12 4298 267 52 56 chr11 38703230 38703405 -110080067 - L1ME2 LINE L1 -5881 334 160 1751 130 114 19 chr11 38705086 38705394 -110078078 - MER1B DNA MER1_type 0 337 1 1283 169 142 15 chr11 38705469 38705736 -110077736 - AluJo SINE Alu 0 302 2 259 326 107 12 chr11 38705801 38706043 -110077429 + L2 LINE L2 2817 3081 -191 323 218 39 0 chr11 38706081 38706159 -110077313 - L2 LINE L2 -2 3270 3190 218 359 82 13 chr11 38706263 38706422 -110077050 + L2 LINE L2 3138 3307 -6 1713 210 161 20 chr11 38706662 38707153 -110076319 + MLT1F1 LTR MaLR 8 567 0 1752 190 8 37 chr11 38707283 38707608 -110075864 + MLT1A1 LTR MaLR 12 328 -37 2072 148 92 56 chr11 38707608 38708019 -110075453 + MSTB LTR MaLR 1 426 0 1752 190 8 37 chr11 38708019 38708045 -110075427 + MLT1A1 LTR MaLR 328 353 -12 694 181 47 7 chr11 38708188 38708337 -110075135 - MIR SINE MIR -18 244 90 306 288 94 20 chr11 38708375 38708589 -110074883 - MIR SINE MIR -20 242 12 216 287 46 11 chr11 38709363 38709450 -110074022 - MER5A DNA MER1_type -9 180 91 2349 77 17 10 chr11 38709466 38709766 -110073706 - AluY SINE Alu -4 307 6 545 161 0 0 chr11 38710150 38710237 -110073235 + AluSg/x SINE Alu 216 302 -10 2818 104 41 2 chr11 38710472 38710884 -110072588 + MSTA LTR MaLR 1 428 0 519 322 124 37 chr11 38710954 38711480 -110071992 - L2 LINE L2 0 3313 2743 358 224 105 81 chr11 38711563 38711773 -110071699 - LTR33 LTR ERVL -270 251 37 1255 259 73 59 chr11 38711880 38712400 -110071072 + L1MC4a LINE L1 1944 2455 -3760 1808 178 7 3 chr11 38712400 38712692 -110070780 - AluJo SINE Alu -16 296 4 1255 259 73 59 chr11 38712692 38712806 -110070666 + L1MC4a LINE L1 2455 2566 -3649 1963 168 7 0 chr11 38712806 38713116 -110070356 - AluJb SINE Alu 0 312 1 1255 259 73 59 chr11 38713116 38713478 -110069994 + L1MC4a LINE L1 2566 2919 -3296 1076 245 45 58 chr11 38713456 38713992 -110069480 + L1MC4a LINE L1 4522 5063 -1152 * 22 0 0 0 chr11 38714032 38714054 -110069418 + AT_rich Low_complexity Low_complexity 1 22 0 2207 91 3 14 chr11 38714057 38714353 -110069119 + AluY SINE Alu 1 293 -18 25 51 0 0 chr11 38714397 38714436 -110069036 + AT_rich Low_complexity Low_complexity 1 39 0 4012 242 101 72 chr11 38714464 38714790 -110068682 + L1MC4a LINE L1 5084 5399 -836 1925 148 30 3 chr11 38714790 38715094 -110068378 + AluSx SINE Alu 1 312 0 4012 242 101 72 chr11 38715094 38717087 -110066385 + L1MC4a LINE L1 5399 5994 -241 1577 177 57 114 chr11 38717078 38717658 -110065814 + L1ME1 LINE L1 5473 6085 -81 * 2135 160 18 3 chr11 38717658 38717990 -110065482 - MER1B DNA MER1_type 0 337 1 1577 177 57 114 chr11 38717990 38718051 -110065421 + L1ME1 LINE L1 6085 5993 -173 2352 92 3 3 chr11 38718051 38718357 -110065115 + AluY SINE Alu 1 306 -5 1577 177 57 114 chr11 38718357 38718505 -110064967 + L1ME1 LINE L1 5992 6147 -19 1491 200 104 11 chr11 38718595 38718974 -110064498 + L1MC4a LINE L1 6111 6242 0 * 1608 233 82 26 chr11 38718970 38719735 -110063737 + L1ME3 LINE L1 5152 6024 -138 298 174 0 0 chr11 38719739 38719785 -110063687 + L1ME3A LINE L1 6070 6115 -55 1231 284 80 29 chr11 38720970 38721555 -110061917 - MLT1L LTR MaLR 0 615 1 1763 147 17 31 chr11 38721646 38721938 -110061534 - AluJo SINE Alu -24 288 1 227 196 39 0 chr11 38722470 38722521 -110060951 + MLT1K LTR MaLR 532 584 -4 2117 117 3 0 chr11 38722934 38723224 -110060248 + AluSx SINE Alu 1 291 -21 327 49 0 0 chr11 38723226 38723267 -110060205 + (TG)n Simple_repeat Simple_repeat 2 42 0 281 316 32 0 chr11 38723280 38723375 -110060097 - MIR SINE MIR -119 143 46 382 169 15 0 chr11 38725026 38725088 -110058384 - MER20 DNA MER1_type 0 219 157 2160 154 76 21 chr11 38725088 38725147 -110058325 - MLT2A2 LTR ERVL 0 554 500 2298 117 0 3 chr11 38725147 38725456 -110058016 - AluY SINE Alu 0 311 4 2160 154 76 21 chr11 38725456 38725901 -110057571 - MLT2A2 LTR ERVL -54 500 1 771 134 148 28 chr11 38725903 38726045 -110057427 - MER20 DNA MER1_type -60 159 1 29 28 0 0 chr11 38726661 38726697 -110056775 + AT_rich Low_complexity Low_complexity 1 36 0 2147 107 14 3 chr11 38726840 38727130 -110056342 + AluSp SINE Alu 1 293 -20 297 243 29 39 chr11 38727199 38727302 -110056170 - L1ME4a LINE L1 -54 6067 5966 572 312 45 13 chr11 38727336 38727612 -110055860 - L1ME4a LINE L1 -330 5791 5542 2055 82 0 30 chr11 38727953 38728221 -110055251 - AluSg SINE Alu -15 295 36 1960 163 3 0 chr11 38728582 38728889 -110054583 - AluSx SINE Alu -4 308 1 417 281 43 30 chr11 38729710 38729874 -110053598 - MIR SINE MIR -38 224 59 2354 107 0 0 chr11 38729999 38730299 -110053173 - AluSc SINE Alu -9 300 1 1420 131 81 111 chr11 38730966 38731264 -110052208 + AluJb SINE Alu 9 297 -15 743 207 47 12 chr11 38731264 38731433 -110052039 - MER5A DNA MER1_type -14 175 1 571 279 31 6 chr11 38731455 38731616 -110051856 + MER5B DNA MER1_type 12 176 -2 679 286 6 11 chr11 38731624 38731806 -110051666 + MLT1J2 LTR MaLR 269 449 -1 640 295 141 36 chr11 38732913 38733419 -110050053 - MLT1K LTR MaLR -17 598 5 954 249 13 0 chr11 38734464 38734689 -110048783 + MIR SINE MIR 35 262 0 503 226 24 67 chr11 38735104 38735256 -110048216 + LTR37A LTR ERV1 18 162 -264 1895 203 136 80 chr11 38735256 38735493 -110047979 - MLT1E1 LTR MaLR 0 654 432 2164 118 0 13 chr11 38735493 38735808 -110047664 - AluY SINE Alu 0 311 1 1895 203 136 80 chr11 38735808 38736136 -110047336 - MLT1E1 LTR MaLR -222 432 57 2302 114 0 9 chr11 38736136 38736451 -110047021 + AluSx SINE Alu 1 312 0 290 148 222 0 chr11 38736484 38736538 -110046934 - MLT1E1 LTR MaLR -588 66 1 207 0 0 0 chr11 38736626 38736649 -110046823 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1558 185 20 33 chr11 38736655 38736958 -110046514 - AluJo SINE Alu -13 299 1 773 171 51 0 chr11 38736964 38737122 -110046350 + LTR37A LTR ERV1 255 420 -6 231 236 0 18 chr11 38737588 38737643 -110045829 + L2 LINE L2 3203 3256 -16 1630 155 39 10 chr11 38739070 38739379 -110044093 + MER33 DNA MER1_type 7 324 0 732 230 40 35 chr11 38739414 38739614 -110043858 - MER3 DNA MER1_type 0 209 9 1732 117 12 0 chr11 38739618 38739865 -110043607 + AluSg SINE Alu 56 305 -5 2301 100 0 3 chr11 38739916 38740216 -110043256 + AluSg SINE Alu 3 301 -9 2198 87 0 0 chr11 38741056 38741332 -110042140 + AluY SINE Alu 1 276 -35 281 136 0 0 chr11 38741332 38741376 -110042096 + AluY SINE Alu 251 294 -6 356 282 9 5 chr11 38741477 38741607 -110041865 - MIR SINE MIR -72 136 28 207 0 0 0 chr11 38742810 38742833 -110040639 + (T)n Simple_repeat Simple_repeat 1 23 0 2190 90 0 10 chr11 38742906 38743224 -110040248 + AluY SINE Alu 1 315 0 569 254 75 10 chr11 38743233 38743436 -110040036 - MIR SINE MIR -1 261 46 326 227 45 11 chr11 38743586 38743674 -110039798 - MLT1I LTR MaLR -4 405 315 496 278 23 15 chr11 38743684 38743809 -110039663 + MLT1G LTR MaLR 258 386 -204 2351 109 0 3 chr11 38743809 38744120 -110039352 - AluSq SINE Alu -3 310 1 1463 219 14 43 chr11 38744173 38744542 -110038930 + MLT1A2 LTR MaLR 1 358 -16 1533 159 3 65 chr11 38744548 38744857 -110038615 + AluJb SINE Alu 1 290 -22 638 210 112 0 chr11 38744922 38745065 -110038407 + MLT1A2 LTR MaLR 425 583 -7 460 224 96 0 chr11 38745106 38745231 -110038241 - L2 LINE L2 -1 3312 3176 1337 274 85 41 chr11 38745264 38745478 -110037994 - L1ME4a LINE L1 -3 6118 5915 2482 36 39 29 chr11 38745478 38745786 -110037686 - AluY SINE Alu 0 311 1 1337 274 85 41 chr11 38745786 38746228 -110037244 - L1ME4a LINE L1 -206 5915 5433 358 293 32 19 chr11 38746297 38746454 -110037018 + MIR SINE MIR 77 235 -27 302 129 52 164 chr11 38746671 38746787 -110036685 - MLT1H LTR MaLR -23 526 424 327 267 43 17 chr11 38746978 38747094 -110036378 - MLT1I LTR MaLR -272 137 19 247 97 0 0 chr11 38748576 38748607 -110034865 - Alu SINE Alu -246 55 25 1353 124 21 21 chr11 38748607 38748636 -110034836 + L1MA4A LINE L1 6067 6095 -208 2430 174 25 33 chr11 38748636 38749126 -110034346 + MER66B LTR ERV1 1 486 0 1353 124 21 21 chr11 38749126 38749330 -110034142 + L1MA4A LINE L1 6094 6300 -3 944 211 56 4 chr11 38750034 38750308 -110033164 - MER33 DNA MER1_type -41 283 1 422 259 42 48 chr11 38750477 38750643 -110032829 + L2 LINE L2 3148 3312 -1 376 316 65 24 chr11 38750661 38750829 -110032643 - MIR SINE MIR -74 188 14 372 43 0 0 chr11 38750870 38750916 -110032556 + (TG)n Simple_repeat Simple_repeat 1 46 0 381 192 0 0 chr11 38751416 38751489 -110031983 - MIR SINE MIR -6 256 184 2283 213 64 16 chr11 38751540 38752057 -110031415 - MLT1F LTR MaLR 0 542 1 748 253 5 5 chr11 38752088 38752282 -110031190 - MIR SINE MIR -1 261 68 2176 82 7 4 chr11 38752764 38753078 -110030394 + AluSg SINE Alu 1 315 0 480 188 31 0 chr11 38753865 38753961 -110029511 - L1ME1 LINE L1 -43 6123 6025 397 145 0 0 chr11 38753963 38754025 -110029447 - L1ME1 LINE L1 -392 5774 5713 504 260 153 0 chr11 38754330 38754480 -110028992 + MER5A DNA MER1_type 17 189 0 271 222 37 28 chr11 38754837 38754945 -110028527 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 26 36 0 0 chr11 38755050 38755078 -110028394 + GC_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr11 38755680 38755723 -110027749 + GC_rich Low_complexity Low_complexity 1 43 0 201 121 0 0 chr11 38755992 38756025 -110027447 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 2016 112 51 10 chr11 38758736 38759032 -110024440 + AluSx SINE Alu 1 308 -4 297 0 0 0 chr11 38759946 38759979 -110023493 + (TG)n Simple_repeat Simple_repeat 1 33 0 659 207 141 35 chr11 38760271 38760469 -110023003 - MER20 DNA MER1_type 0 219 1 220 176 14 40 chr11 38762012 38762086 -110021386 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 2264 95 3 10 chr11 38762310 38762614 -110020858 + AluSg SINE Alu 1 302 -8 1845 262 36 23 chr11 38762910 38763486 -110019986 - HsTC2 DNA Tc2 -1298 600 17 293 335 84 6 chr11 38763589 38763756 -110019716 - MIR SINE MIR -70 192 13 24 0 0 0 chr11 38765212 38765236 -110018236 + AT_rich Low_complexity Low_complexity 1 24 0 235 304 14 14 chr11 38765936 38766005 -110017467 + L2 LINE L2 3182 3250 -22 1880 117 0 0 chr11 38766505 38766772 -110016700 + AluSx SINE Alu 35 301 0 780 143 8 8 chr11 38767714 38767840 -110015632 + FLAM_A SINE Alu 1 126 -7 263 222 0 7 chr11 38767938 38768043 -110015429 + MER5A DNA MER1_type 14 189 0 450 283 113 30 chr11 38768046 38768236 -110015236 + MIR SINE MIR 12 226 -36 2338 74 3 55 chr11 38768236 38768561 -110014911 - AluY SINE Alu -3 308 1 450 283 113 30 chr11 38768561 38768600 -110014872 + MIR SINE MIR 226 260 -2 267 231 67 10 chr11 38768686 38768790 -110014682 - L1ME4a LINE L1 -169 5952 5843 2033 145 13 10 chr11 38769023 38769334 -110014138 + AluSx SINE Alu 1 312 0 563 294 55 29 chr11 38769385 38769623 -110013849 + L1ME4a LINE L1 5582 5825 -296 1021 192 35 10 chr11 38769630 38769833 -110013639 - MER3 DNA MER1_type 0 209 2 26 30 0 0 chr11 38770988 38771021 -110012451 + AT_rich Low_complexity Low_complexity 1 33 0 1823 155 0 48 chr11 38771148 38771458 -110012014 + AluSx SINE Alu 1 295 -17 728 270 88 72 chr11 38771641 38772093 -110011379 - L1ME3A LINE L1 -262 5902 5438 2199 94 3 3 chr11 38772093 38772402 -110011070 - AluSg1 SINE Alu 0 309 1 728 270 88 72 chr11 38772402 38772436 -110011036 - L1ME3A LINE L1 -726 5438 5406 438 324 71 13 chr11 38772842 38773067 -110010405 + MIR SINE MIR 15 252 -10 26 0 0 0 chr11 38773241 38773267 -110010205 + AT_rich Low_complexity Low_complexity 1 26 0 1371 62 11 0 chr11 38773267 38773444 -110010028 - L1MA2 LINE L1 -4 6300 6122 21 0 0 0 chr11 38774614 38774635 -110008837 + AT_rich Low_complexity Low_complexity 1 21 0 1903 189 62 46 chr11 38774692 38775146 -110008326 + LOR1b LTR ERV1 1 461 0 392 282 19 19 chr11 38775711 38775867 -110007605 - MIR SINE MIR -12 250 95 1905 156 7 7 chr11 38776216 38776511 -110006961 + AluJb SINE Alu 3 297 -15 2291 104 3 0 chr11 38777654 38777952 -110005520 + AluSg SINE Alu 1 299 -11 231 213 88 25 chr11 38781581 38781661 -110001811 - MIR SINE MIR -20 242 158 1664 238 57 9 chr11 38781661 38782098 -110001374 + MLT1C LTR MaLR 1 458 -9 374 219 0 0 chr11 38782126 38782208 -110001264 - MIR SINE MIR -111 151 70 1723 176 49 51 chr11 38782822 38783213 -110000259 + MLT1B LTR MaLR 1 390 0 2232 118 0 7 chr11 38784277 38784582 -109998890 + AluSx SINE Alu 1 303 -9 275 0 29 0 chr11 38784654 38784689 -109998783 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1157 256 111 40 chr11 38784702 38784958 -109998514 - L1MC4a LINE L1 -751 5395 5539 1992 126 0 41 chr11 38784958 38785275 -109998197 - AluSx SINE Alu -4 308 5 1157 256 111 40 chr11 38785275 38785672 -109997800 - L1MC4a LINE L1 -606 5540 5172 1383 216 111 64 chr11 38785890 38786401 -109997071 - MLT1E LTR MaLR -11 582 3 286 242 88 11 chr11 38788139 38788230 -109995242 - L2 LINE L2 -31 3241 3144 216 67 0 0 chr11 38788346 38788376 -109995096 + (TG)n Simple_repeat Simple_repeat 2 31 0 1053 242 95 18 chr11 38788605 38788890 -109994582 - MLT1J LTR MaLR -98 413 107 1743 168 113 3 chr11 38789129 38789457 -109994015 - MLT1A1 LTR MaLR -1 364 1 234 214 276 0 chr11 38791640 38791738 -109991734 - MIR SINE MIR -21 241 117 21 0 0 0 chr11 38792222 38792243 -109991229 + AT_rich Low_complexity Low_complexity 1 21 0 525 274 51 6 chr11 38792761 38792936 -109990536 + MIR SINE MIR 14 196 -66 2128 165 38 65 chr11 38793581 38794055 -109989417 - MLT1C LTR MaLR -5 462 2 2306 118 0 0 chr11 38794357 38794662 -109988810 - AluSx SINE Alu -7 305 1 661 120 16 16 chr11 38794775 38794900 -109988572 + Charlie5 DNA MER1_type 2486 2610 -2 335 177 177 100 chr11 38795077 38795132 -109988340 + MLT1D LTR MaLR 48 97 -408 186 43 0 0 chr11 38795132 38795155 -109988317 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2174 80 29 7 chr11 38795158 38795433 -109988039 - AluSx SINE Alu -31 281 1 335 177 177 100 chr11 38795433 38795503 -109987969 + MLT1D LTR MaLR 98 187 -318 441 255 152 0 chr11 38795760 38795944 -109987528 - MIR SINE MIR -10 252 41 2381 89 7 0 chr11 38796135 38796438 -109987034 - AluSp SINE Alu -8 305 1 1412 178 56 24 chr11 38796440 38796727 -109986745 - AluJo SINE Alu -4 308 13 2832 78 0 22 chr11 38797054 38797424 -109986048 + THE1B LTR MaLR 3 364 0 427 281 111 59 chr11 38797981 38798287 -109985185 - MLT1I LTR MaLR 0 409 88 181 306 130 19 chr11 38798426 38798534 -109984938 + L2 LINE L2 3153 3272 0 5934 152 17 35 chr11 38798766 38799560 -109983912 - L1PA16 LINE L1 -9 6157 5350 1997 143 7 13 chr11 38799560 38799868 -109983604 - AluJb SINE Alu -6 306 1 5934 152 17 35 chr11 38799868 38800094 -109983378 - L1PA16 LINE L1 -816 5350 5122 2049 138 0 0 chr11 38800094 38800391 -109983081 - AluY SINE Alu -14 297 1 5934 152 17 35 chr11 38800391 38801441 -109982031 - L1PA16 LINE L1 -1044 5122 4123 215 313 89 47 chr11 38801534 38801692 -109981780 + MIR SINE MIR 34 205 -57 1946 186 36 43 chr11 38801692 38801934 -109981538 - MLT1C LTR MaLR -2 465 226 2061 107 31 24 chr11 38801934 38802224 -109981248 - AluSx SINE Alu -20 292 1 1946 186 36 43 chr11 38802224 38802449 -109981023 - MLT1C LTR MaLR -241 226 1 215 313 89 47 chr11 38802449 38802504 -109980968 + MIR SINE MIR 205 256 -6 336 24 0 0 chr11 38803372 38803413 -109980059 + (TG)n Simple_repeat Simple_repeat 2 42 0 2904 145 11 32 chr11 38803863 38804393 -109979079 + L1MB8 LINE L1 5659 6177 -1 243 282 38 84 chr11 38804556 38804687 -109978785 - MIR SINE MIR -59 149 25 543 144 189 0 chr11 38805644 38805734 -109977738 - Tigger1 DNA MER2_type -4 2414 2308 1070 72 0 0 chr11 38805736 38805874 -109977598 + AluY SINE Alu 173 310 -1 15251 127 14 3 chr11 38805874 38808158 -109975314 - Tigger1 DNA MER2_type -109 2309 1 260 290 58 36 chr11 38808454 38808592 -109974880 + MIR SINE MIR 78 218 -44 354 284 47 8 chr11 38809272 38809399 -109974073 - MIR SINE MIR -98 164 33 221 75 25 0 chr11 38810024 38810064 -109973408 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 334 348 9 0 chr11 38810472 38810587 -109972885 - L2 LINE L2 -2 3270 3155 231 247 0 65 chr11 38810589 38810666 -109972806 - L2 LINE L2 -1 3271 3200 443 330 58 15 chr11 38811425 38811684 -109971788 + L1MC4a LINE L1 5678 5949 -213 266 145 48 32 chr11 38811689 38811813 -109971659 + (TA)n Simple_repeat Simple_repeat 1 126 0 1271 32 0 6 chr11 38812711 38812867 -109970605 - L1PA4 LINE L1 -2 6153 5999 251 172 0 35 chr11 38813173 38813231 -109970241 - L1ME4a LINE L1 -56 6065 6010 315 0 0 0 chr11 38813267 38813302 -109970170 + (TG)n Simple_repeat Simple_repeat 1 35 0 374 217 63 28 chr11 38813592 38813735 -109969737 - L1ME4a LINE L1 -286 5835 5688 1925 128 179 16 chr11 38815212 38815580 -109967892 - MSTA LTR MaLR 0 428 1 9939 131 18 31 chr11 38815580 38817180 -109966292 - MSTA-int LTR MaLR 0 1580 3 1671 170 184 11 chr11 38817182 38817546 -109965926 - MSTA LTR MaLR 0 428 2 341 290 140 48 chr11 38817765 38817972 -109965500 + MIR SINE MIR 12 237 -25 528 265 96 41 chr11 38818070 38818289 -109965183 + MIR SINE MIR 12 242 -20 281 302 179 28 chr11 38819475 38819654 -109963818 + MIR SINE MIR 57 262 0 243 359 57 37 chr11 38821953 38822198 -109961274 + L2 LINE L2 2618 2867 -447 2134 112 3 0 chr11 38822318 38822613 -109960859 - AluSp SINE Alu -17 296 1 32 0 0 0 chr11 38822674 38822706 -109960766 + AT_rich Low_complexity Low_complexity 1 32 0 384 239 123 29 chr11 38823257 38823395 -109960077 + MIR SINE MIR 100 250 -12 4582 151 14 3 chr11 38823624 38824348 -109959124 - MER44D DNA MER2_type -1 604 1 3228 64 0 0 chr11 38824807 38825212 -109958260 - L1PA8 LINE L1 0 6172 5768 22 0 0 0 chr11 38826359 38826381 -109957091 + AT_rich Low_complexity Low_complexity 1 22 0 206 216 0 39 chr11 38826818 38826869 -109956603 + C-rich Low_complexity Low_complexity 3 51 0 743 254 44 4 chr11 38827008 38827236 -109956236 - L1ME3A LINE L1 -5 6165 5929 901 273 95 59 chr11 38828238 38828429 -109955043 - L1ME4a LINE L1 -158 5963 5780 8100 120 35 13 chr11 38828429 38829051 -109954421 - HSMAR2 DNA Mariner -1 1301 694 1804 126 39 0 chr11 38829051 38829337 -109954135 - AluSx SINE Alu -15 297 1 8100 120 35 13 chr11 38829337 38829986 -109953486 - HSMAR2 DNA Mariner -608 694 3 901 273 95 59 chr11 38829986 38830435 -109953037 - L1ME4a LINE L1 -341 5780 5300 24 53 0 0 chr11 38831765 38831803 -109951669 + AT_rich Low_complexity Low_complexity 1 38 0 346 286 197 63 chr11 38832294 38833137 -109950335 - L2 LINE L2 -528 2786 1831 1496 176 3 30 chr11 38833162 38833463 -109950009 - AluJb SINE Alu -19 293 1 276 258 30 0 chr11 38834082 38834174 -109949298 - MIR SINE MIR -47 161 64 202 283 172 0 chr11 38834948 38835047 -109948425 + MIR SINE MIR 33 148 -60 332 245 108 17 chr11 38835199 38835317 -109948155 - MIR3 SINE MIR -4 204 72 239 186 17 0 chr11 38835817 38835876 -109947596 + (TA)n Simple_repeat Simple_repeat 1 60 0 463 234 29 77 chr11 38835894 38836085 -109947387 - MIR SINE MIR -56 206 19 283 224 47 35 chr11 38836822 38836907 -109946565 - L1MC4 LINE L1 -30 8012 7927 2340 57 0 3 chr11 38836909 38837208 -109946264 - AluY SINE Alu -13 298 1 2240 105 0 0 chr11 38837294 38837598 -109945874 - AluSq SINE Alu -9 304 1 652 273 90 37 chr11 38837676 38837965 -109945507 - L1MD1 LINE L1 -278 5886 5614 4462 121 8 0 chr11 38837965 38838595 -109944877 + MER41B LTR ERV1 1 635 0 652 273 90 37 chr11 38838595 38839090 -109944382 - L1MD1 LINE L1 -550 5614 5060 219 239 0 0 chr11 38839711 38839757 -109943715 - MIR3 SINE MIR -3 205 160 305 273 68 0 chr11 38839774 38839862 -109943610 - L2 LINE L2 -1 3271 3178 324 270 110 10 chr11 38840000 38840100 -109943372 + MER58D DNA MER1_type 5 114 -272 * 1198 163 64 19 chr11 38840099 38840363 -109943109 + MER58D DNA MER1_type 92 367 -19 535 154 115 0 chr11 38840369 38840473 -109942999 + MIR SINE MIR 77 192 -70 2239 92 0 7 chr11 38840481 38840784 -109942688 + AluSc SINE Alu 1 301 -8 288 0 0 0 chr11 38841940 38841972 -109941500 + (TG)n Simple_repeat Simple_repeat 2 33 0 290 315 109 39 chr11 38843032 38843289 -109940183 - L2 LINE L2 -13 3259 2985 262 103 345 0 chr11 38843315 38843373 -109940099 + MADE1 DNA Mariner 3 80 0 2130 152 25 8 chr11 38843373 38843735 -109939737 - MLT1B LTR MaLR -22 368 1 395 317 154 32 chr11 38843822 38844021 -109939451 - L2 LINE L2 -457 2857 2684 1226 188 5 0 chr11 38844021 38844234 -109939238 - MER20 DNA MER1_type -1 218 5 395 317 154 32 chr11 38844234 38844346 -109939126 - L2 LINE L2 -630 2684 2508 2191 82 7 0 chr11 38844378 38844669 -109938803 - AluSq SINE Alu -20 293 1 364 282 68 18 chr11 38845270 38845433 -109938039 + MER117 DNA MER1_type 3 173 -24 341 314 168 34 chr11 38845655 38845977 -109937495 - L2 LINE L2 -530 2784 2420 222 352 40 24 chr11 38846249 38846374 -109937098 - L2 LINE L2 -213 3059 2933 237 296 56 14 chr11 38846557 38846628 -109936844 + L2 LINE L2 3193 3266 -6 213 342 139 38 chr11 38847016 38847174 -109936298 + MIR3 SINE MIR 34 207 -1 449 249 46 64 chr11 38847339 38847512 -109935960 - MIR SINE MIR -10 252 83 293 317 35 21 chr11 38848012 38848154 -109935318 - MIR SINE MIR -104 158 15 2042 116 3 3 chr11 38848815 38849109 -109934363 - AluSg SINE Alu -16 294 1 1418 164 7 37 chr11 38849432 38849701 -109933771 - AluJb SINE Alu -51 261 1 205 293 40 27 chr11 38849972 38850047 -109933425 + MIR SINE MIR 20 95 -113 2441 55 0 3 chr11 38850460 38850768 -109932704 - AluY SINE Alu -4 307 1 475 297 77 13 chr11 38850933 38851088 -109932384 + MIR SINE MIR 98 262 0 265 318 88 41 chr11 38851946 38852289 -109931183 - L1ME4a LINE L1 -217 5904 5546 26 64 0 0 chr11 38852365 38852412 -109931060 + AT_rich Low_complexity Low_complexity 1 47 0 355 272 88 41 chr11 38852706 38852853 -109930619 - MIR SINE MIR -15 247 94 1864 173 7 92 chr11 38854061 38854484 -109928988 + MLT1B LTR MaLR 3 389 -1 22 0 0 0 chr11 38854506 38854528 -109928944 + AT_rich Low_complexity Low_complexity 1 22 0 1797 169 0 0 chr11 38854528 38854818 -109928654 + AluSx SINE Alu 1 290 -22 1340 179 40 26 chr11 38854934 38855207 -109928265 + MLT1C LTR MaLR 1 277 -190 480 253 97 38 chr11 38855580 38855766 -109927706 + MIR SINE MIR 15 211 -51 984 161 21 16 chr11 38856842 38857028 -109926444 - MLT1C LTR MaLR -2 465 279 2512 74 15 87 chr11 38857059 38857248 -109926224 + THE1B LTR MaLR 1 202 -162 338 71 36 0 chr11 38857248 38857304 -109926168 - L1PB2 LINE L1 -4 6147 6090 3328 52 7 7 chr11 38857304 38857717 -109925755 - L1PA8 LINE L1 -5 6167 5749 2512 74 15 87 chr11 38857717 38857918 -109925554 + THE1B LTR MaLR 200 364 0 956 175 40 31 chr11 38857918 38858146 -109925326 - MLT1C LTR MaLR -186 281 52 28 0 0 0 chr11 38858386 38858414 -109925058 + AT_rich Low_complexity Low_complexity 1 28 0 396 284 45 7 chr11 38858623 38858778 -109924694 + Charlie8 DNA MER1_type 3 163 -2254 583 219 37 6 chr11 38858866 38859027 -109924445 + HsTC2 DNA Tc2 3 1894 -4 537 270 190 5 chr11 38859154 38859365 -109924107 + MIR SINE MIR 9 258 -4 258 236 308 4 chr11 38859386 38859528 -109923944 + MIR SINE MIR 58 246 -16 1802 194 9 9 chr11 38862275 38862611 -109920861 - MLT1A1 LTR MaLR -29 336 1 999 229 48 0 chr11 38862831 38863062 -109920410 + MIR SINE MIR 15 256 -6 218 222 0 0 chr11 38863248 38863293 -109920179 + A-rich Low_complexity Low_complexity 130 174 0 359 301 38 38 chr11 38863425 38863558 -109919914 + MER5A DNA MER1_type 54 186 -3 238 173 19 0 chr11 38863965 38864017 -109919455 + L1ME4a LINE L1 5995 6047 -74 533 223 142 71 chr11 38864044 38864255 -109919217 + MIR SINE MIR 2 227 -35 203 362 0 14 chr11 38864889 38864958 -109918514 + L3 LINE CR1 1394 1461 -116 738 113 0 0 chr11 38866160 38866284 -109917188 + (TGGA)n Simple_repeat Simple_repeat 3 126 0 990 117 0 0 chr11 38866312 38866491 -109916981 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1188 108 6 0 chr11 38866596 38866763 -109916709 - AluSg SINE Alu -142 168 1 646 281 100 0 chr11 38866794 38867004 -109916468 - MIR SINE MIR -30 232 2 444 215 203 19 chr11 38867349 38867507 -109915965 - MER5A DNA MER1_type 0 189 3 217 344 62 10 chr11 38867547 38867643 -109915829 - MER5A DNA MER1_type -22 167 67 315 295 23 23 chr11 38867938 38868067 -109915405 + L2 LINE L2 3167 3295 -18 598 214 65 126 chr11 38868124 38868233 -109915239 - MIR SINE MIR -47 215 124 2326 86 0 0 chr11 38868233 38868535 -109914937 + AluY SINE Alu 1 302 -9 598 214 65 126 chr11 38868535 38868640 -109914832 - MIR SINE MIR -138 124 14 300 277 135 20 chr11 38869109 38869257 -109914215 + MIR SINE MIR 83 247 -15 2026 124 0 7 chr11 38869303 38869601 -109913871 - AluSx SINE Alu -16 296 1 598 305 28 6 chr11 38870172 38870349 -109913123 - MIR SINE MIR -47 215 35 254 192 0 19 chr11 38870480 38870532 -109912940 - MER20 DNA MER1_type -3 216 166 2181 168 15 32 chr11 38870534 38870691 -109912781 - LOR1b LTR ERV1 0 461 303 2834 70 13 11 chr11 38870691 38871064 -109912408 + THE1C LTR MaLR 1 374 -1 2181 168 15 32 chr11 38871064 38871311 -109912161 - LOR1b LTR ERV1 -158 303 64 637 147 0 10 chr11 38871471 38871573 -109911899 - L1MB7 LINE L1 -84 6100 6000 184 323 136 15 chr11 38871732 38871930 -109911542 + L2 LINE L2 1851 2072 -1242 553 261 51 7 chr11 38872083 38872221 -109911251 + MIR SINE MIR 23 166 -96 613 300 71 76 chr11 38872830 38872928 -109910544 + L2 LINE L2 2444 2541 -773 905 221 53 0 chr11 38872928 38873136 -109910336 + MER20 DNA MER1_type 1 219 0 613 300 71 76 chr11 38873136 38873319 -109910153 + L2 LINE L2 2541 2725 -589 1548 196 31 0 chr11 38873319 38873610 -109909862 + AluJb SINE Alu 1 300 -12 613 300 71 76 chr11 38873610 38873707 -109909765 + L2 LINE L2 2725 2821 -493 2050 194 16 7 chr11 38873812 38874249 -109909223 - L1M4 LINE L1 -1445 4701 4261 1786 113 3 78 chr11 38874249 38874568 -109908904 - AluJb SINE Alu -17 295 1 2590 203 73 17 chr11 38874590 38875279 -109908193 - L1M4 LINE L1 -3092 3054 2328 301 211 18 0 chr11 38875297 38875354 -109908118 + MER5B DNA MER1_type 121 178 0 390 360 16 16 chr11 38876964 38877150 -109906322 + L2 LINE L2 2905 3090 -182 208 148 0 56 chr11 38877214 38877268 -109906204 + (TAA)n Simple_repeat Simple_repeat 2 52 0 203 244 26 13 chr11 38877312 38877390 -109906082 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 643 313 15 0 chr11 38877406 38877601 -109905871 - MIR SINE MIR -27 235 38 1565 160 31 24 chr11 38877629 38877917 -109905555 - AluJb SINE Alu -22 290 1 557 360 15 0 chr11 38878266 38878463 -109905009 - MIR SINE MIR -15 247 48 2191 94 7 0 chr11 38878467 38878764 -109904708 - AluY SINE Alu -12 299 1 200 263 200 38 chr11 38879646 38879726 -109903746 + L2 LINE L2 2878 2970 -302 221 300 0 0 chr11 38880657 38880717 -109902755 + MER5A DNA MER1_type 108 167 -22 193 169 127 56 chr11 38880662 38880733 -109902739 - MER5A DNA MER1_type -101 88 13 * 279 304 202 16 chr11 38881319 38881576 -109901896 + L1ME4a LINE L1 5602 5906 -215 352 247 37 0 chr11 38881622 38881703 -109901769 - L2 LINE L2 -4 3309 3226 448 143 71 12 chr11 38881720 38881804 -109901668 + MER5A DNA MER1_type 13 101 -88 313 279 23 47 chr11 38881867 38881996 -109901476 + HAL1b LINE L1 1222 1347 -1 499 259 56 7 chr11 38882554 38882697 -109900775 + MIR3 SINE MIR 4 153 -55 381 301 208 6 chr11 38883864 38884037 -109899435 + MIR SINE MIR 51 258 -4 487 300 109 32 chr11 38884162 38884609 -109898863 - L2 LINE L2 -108 3205 2712 566 201 56 84 chr11 38884827 38884847 -109898625 - L1MD3 LINE L1 -447 7548 7529 2400 188 117 4 chr11 38884847 38885352 -109898120 + MER68 LTR ERV1 1 562 0 566 201 56 84 chr11 38885352 38886163 -109897309 - L1MD3 LINE L1 -466 7529 6697 438 20 0 0 chr11 38886163 38886214 -109897258 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 566 201 56 84 chr11 38886214 38886343 -109897129 - L1MD3 LINE L1 -1298 6697 6566 2098 89 3 7 chr11 38886343 38886634 -109896838 - AluSg1 SINE Alu -19 290 1 566 201 56 84 chr11 38886634 38887275 -109896197 - L1MD3 LINE L1 -1429 6566 5910 4646 166 95 11 chr11 38887281 38888639 -109894833 - MER52A LTR ERV1 0 1755 211 324 247 13 13 chr11 38889062 38889139 -109894333 - MER52A LTR ERV1 -1678 77 1 195 125 0 0 chr11 38889307 38889347 -109894125 + (ATG)n Simple_repeat Simple_repeat 2 41 0 572 287 108 27 chr11 38889354 38889478 -109893994 - MIR SINE MIR -1 261 148 1728 173 116 3 chr11 38889478 38889813 -109893659 - MER83C LTR ERV1 0 373 1 572 287 108 27 chr11 38889813 38889911 -109893561 - MIR SINE MIR -114 148 21 665 280 68 38 chr11 38890428 38890563 -109892909 + MIR SINE MIR 15 161 -101 3183 174 9 26 chr11 38890563 38891133 -109892339 - MER68 LTR ERV1 -2 560 1 665 280 68 38 chr11 38891133 38891233 -109892239 + MIR SINE MIR 161 257 -5 456 286 107 17 chr11 38891896 38892074 -109891398 - MIR SINE MIR -6 256 63 1875 145 3 0 chr11 38892175 38892465 -109891007 + AluJb SINE Alu 1 291 -21 1792 170 55 0 chr11 38892958 38893287 -109890185 - L1MC1 LINE L1 -4 6329 5983 331 287 64 11 chr11 38893316 38893410 -109890062 - L1ME4a LINE L1 -31 6090 5992 195 307 11 23 chr11 38893431 38893519 -109889953 + MIR SINE MIR 170 256 -6 414 0 0 0 chr11 38893684 38893730 -109889742 + (CA)n Simple_repeat Simple_repeat 2 47 0 1687 158 13 30 chr11 38893869 38894172 -109889300 - AluJb SINE Alu -14 298 1 655 195 8 16 chr11 38894284 38894412 -109889060 + FLAM_A SINE Alu 1 127 -6 854 212 74 17 chr11 38894446 38894702 -109888770 + L1MC5 LINE L1 6986 7252 -735 4010 207 80 40 chr11 38894782 38895550 -109887922 - L1MDa LINE L1 -4252 2288 1451 1781 138 3 48 chr11 38895550 38895861 -109887611 - AluJb SINE Alu -10 302 6 4010 207 80 40 chr11 38895861 38896323 -109887149 - L1MDa LINE L1 -5089 1451 1009 1525 223 123 14 chr11 38896887 38897479 -109885993 + L1MC5 LINE L1 7261 7917 -44 1525 178 0 26 chr11 38897663 38897966 -109885506 - AluJb SINE Alu -17 295 1 762 178 0 0 chr11 38897983 38898101 -109885371 - FLAM_C SINE Alu -24 119 2 442 258 238 33 chr11 38898813 38899053 -109884419 + L2 LINE L2 3022 3310 -3 856 263 94 5 chr11 38899133 38899357 -109884115 - MIR SINE MIR -8 254 11 973 175 6 0 chr11 38899379 38899539 -109883933 - FRAM SINE Alu -5 161 1 1482 209 3 40 chr11 38899561 38899858 -109883614 - AluJo SINE Alu -15 287 2 844 291 73 4 chr11 38899866 38900100 -109883372 - MIR SINE MIR -1 261 12 183 42 0 0 chr11 38901425 38901449 -109882023 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 661 168 98 60 chr11 38902217 38902245 -109881227 - L1MA4A LINE L1 -155 6150 6125 418 179 51 17 chr11 38902245 38902362 -109881110 - L1MA4A LINE L1 0 6303 6183 661 168 98 60 chr11 38902362 38902549 -109880923 - L1MA4A LINE L1 -180 6125 5932 23 0 0 0 chr11 38903251 38903274 -109880198 + AT_rich Low_complexity Low_complexity 1 23 0 2879 183 40 40 chr11 38903491 38904114 -109879358 - LTR27 LTR ERV1 -2 634 12 690 250 16 37 chr11 38904235 38904423 -109879049 + MER58A DNA MER1_type 38 221 -3 404 299 70 59 chr11 38904426 38904479 -109878993 - L1ME LINE L1 -368 5796 5745 1945 130 0 3 chr11 38904479 38904784 -109878688 - AluSx SINE Alu 0 304 1 404 299 70 59 chr11 38904784 38904859 -109878613 - L1ME LINE L1 -419 5745 5672 1458 185 25 3 chr11 38904859 38905145 -109878327 + AluJo SINE Alu 9 300 -12 404 299 70 59 chr11 38905145 38905320 -109878152 - L1ME LINE L1 -492 5672 5488 302 251 112 11 chr11 38905362 38905541 -109877931 - L1ME LINE L1 -753 5393 5197 653 249 17 33 chr11 38906610 38906791 -109876681 + MER45A DNA AcHobo 1 178 0 407 147 107 0 chr11 38906794 38906869 -109876603 - MIR SINE MIR -126 136 54 454 172 73 81 chr11 38907499 38907771 -109875701 + L1MA4A LINE L1 5950 6280 -23 248 317 19 43 chr11 38908933 38909094 -109874378 - L1ME LINE L1 -633 5488 5332 419 311 93 0 chr11 38909334 38909495 -109873977 - L1ME1 LINE L1 -230 5936 5761 514 229 49 8 chr11 38909899 38910021 -109873451 + MER5A DNA MER1_type 1 127 -62 521 211 31 39 chr11 38910022 38910150 -109873322 + MER5A DNA MER1_type 61 187 -2 2104 72 4 7 chr11 38910405 38910683 -109872789 - AluSc SINE Alu -32 277 1 2444 50 0 3 chr11 38911831 38912133 -109871339 - AluY SINE Alu -10 301 1 332 230 149 0 chr11 38912816 38912890 -109870582 + MLT1F1 LTR MaLR 1 85 -508 1521 132 13 9 chr11 38912908 38913178 -109870294 - L1MB2 LINE L1 -17 6172 5902 2334 56 0 10 chr11 38913182 38913484 -109869988 - AluY SINE Alu -12 299 1 1281 108 11 0 chr11 38913745 38913931 -109869541 - L1MB2 LINE L1 -287 5896 5709 1514 220 101 45 chr11 38913943 38914407 -109869065 + MLT1F1 LTR MaLR 78 567 0 598 308 39 5 chr11 38914519 38914727 -109868745 - MIR SINE MIR 0 262 48 306 0 0 0 chr11 38915151 38915185 -109868287 + (TG)n Simple_repeat Simple_repeat 1 34 0 231 36 0 0 chr11 38915184 38915212 -109868260 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2825 150 9 13 chr11 38915359 38915820 -109867652 + MLT1C LTR MaLR 9 467 0 315 231 41 74 chr11 38916978 38917099 -109866373 + MLT1H LTR MaLR 431 547 -2 2399 104 16 0 chr11 38917129 38917437 -109866035 - AluSq SINE Alu 0 313 1 2049 154 52 0 chr11 38917460 38917790 -109865682 + MER7A DNA MER2_type 2 346 0 573 186 11 85 chr11 38917845 38917970 -109865502 - MER104 DNA Tc2 -1718 180 72 2572 56 0 31 chr11 38917970 38918290 -109865182 + AluY SINE Alu 1 310 -1 573 186 11 85 chr11 38918290 38918352 -109865120 - MER104 DNA Tc2 -1826 72 7 411 306 63 81 chr11 38918356 38918689 -109864783 - L2 LINE L2 -71 3201 2875 883 394 116 16 chr11 38918739 38919127 -109864345 - MER31B LTR ERV1 -39 427 1 183 333 56 11 chr11 38919263 38919353 -109864119 - L2 LINE L2 -733 2581 2488 213 294 78 114 chr11 38920535 38920895 -109862577 - L2 LINE L2 0 3272 2926 2275 103 3 0 chr11 38921496 38921798 -109861674 - AluSg1 SINE Alu -6 303 1 379 242 0 62 chr11 38923398 38923526 -109859946 - MLT1J LTR MaLR -301 210 91 330 225 0 50 chr11 38923529 38923574 -109859898 - MLT1G LTR MaLR -417 173 132 2297 120 0 0 chr11 38923574 38923875 -109859597 - AluSx SINE Alu -11 301 1 330 225 0 50 chr11 38923875 38923909 -109859563 - MLT1G LTR MaLR -458 132 98 933 265 153 30 chr11 38924749 38925255 -109858217 + MLT1G LTR MaLR 1 589 -1 232 220 20 0 chr11 38925687 38925737 -109857735 - L2 LINE L2 -31 3241 3191 396 204 129 0 chr11 38925864 38925957 -109857515 + MIR SINE MIR 18 122 -140 34 0 0 0 chr11 38926569 38926603 -109856869 + AT_rich Low_complexity Low_complexity 1 34 0 2195 101 3 52 chr11 38926732 38927059 -109856413 - AluSx SINE Alu -1 311 1 322 215 92 53 chr11 38927932 38928102 -109855370 + MER20 DNA MER1_type 34 212 -7 495 312 0 14 chr11 38928107 38928248 -109855224 - MIR3 SINE MIR -51 157 19 243 88 0 0 chr11 38928414 38928448 -109855024 + (GA)n Simple_repeat Simple_repeat 1 34 0 1479 184 27 36 chr11 38928567 38928898 -109854574 - L1MB8 LINE L1 0 6178 5851 921 102 32 91 chr11 38928903 38929089 -109854383 + MER30B DNA MER1_type 1 175 -15 2356 171 28 36 chr11 38929125 38930019 -109853453 - L1MB8 LINE L1 -433 5745 4861 297 238 16 0 chr11 38930320 38930383 -109853089 - MIR SINE MIR -19 243 180 564 256 36 0 chr11 38930449 38930586 -109852886 - MIR SINE MIR -89 173 32 1746 188 47 9 chr11 38930623 38930964 -109852508 + MLT1A1 LTR MaLR 1 354 -11 209 286 171 0 chr11 38930973 38931043 -109852429 + L2 LINE L2 3224 3305 -8 633 234 122 45 chr11 38932165 38932387 -109851085 - MIR SINE MIR -15 247 9 394 237 114 23 chr11 38932650 38932781 -109850691 + MIR SINE MIR 107 249 -13 281 292 102 15 chr11 38932828 38932965 -109850507 - L2 LINE L2 -12 3301 3153 806 168 0 42 chr11 38933003 38933146 -109850326 + FLAM_C SINE Alu 2 138 -5 1753 153 0 52 chr11 38933166 38933480 -109849992 + AluJo SINE Alu 12 310 0 302 303 16 16 chr11 38933787 38933909 -109849563 - MLT1H LTR MaLR -399 150 29 577 221 67 13 chr11 38934601 38934750 -109848722 - MIR SINE MIR -27 235 79 438 327 132 33 chr11 38934822 38934946 -109848526 + L2 LINE L2 2752 2862 -410 2001 118 0 0 chr11 38934946 38935216 -109848256 - AluSx SINE Alu -1 311 42 438 327 132 33 chr11 38935216 38935507 -109847965 + L2 LINE L2 2862 3222 -50 747 235 131 23 chr11 38935514 38935735 -109847737 + MIR SINE MIR 8 252 -10 224 243 108 27 chr11 38935734 38935808 -109847664 + L2 LINE L2 3234 3313 0 * 23 33 0 0 chr11 38937482 38937512 -109845960 + AT_rich Low_complexity Low_complexity 1 30 0 495 242 85 18 chr11 38937655 38937820 -109845652 + MIR SINE MIR 80 255 -7 368 226 212 7 chr11 38937932 38938069 -109845403 - MIR SINE MIR -25 237 73 201 74 0 0 chr11 38938380 38938407 -109845065 + (TA)n Simple_repeat Simple_repeat 1 27 0 2098 164 0 0 chr11 38938832 38939144 -109844328 + AluSx SINE Alu 1 312 0 289 326 126 19 chr11 38939146 38939361 -109844111 - L2 LINE L2 -619 2695 2458 779 273 130 28 chr11 38940006 38940328 -109843144 + L2 LINE L2 2955 3309 -4 301 252 130 23 chr11 38940463 38940594 -109842878 - L2 LINE L2 -220 3052 2908 348 278 57 91 chr11 38940946 38941155 -109842317 - MIR SINE MIR -37 225 24 473 167 33 0 chr11 38941858 38941948 -109841524 - L1MB3 LINE L1 -7 6176 6084 723 235 18 18 chr11 38942691 38942861 -109840611 - MIR SINE MIR -21 241 72 501 245 82 65 chr11 38943093 38943338 -109840134 + MIR SINE MIR 4 252 -10 233 135 0 58 chr11 38943464 38943516 -109839956 - Alu SINE Alu 0 133 85 1103 150 59 59 chr11 38943516 38943609 -109839863 - AluJo SINE Alu -92 220 128 465 19 0 0 chr11 38943609 38943663 -109839809 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1103 150 59 59 chr11 38943663 38943789 -109839683 - AluJo SINE Alu -183 129 1 2344 63 47 13 chr11 38943802 38944102 -109839370 - AluY SINE Alu -1 310 1 244 254 18 0 chr11 38944236 38944291 -109839181 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2364 102 3 0 chr11 38945892 38946197 -109837275 + AluSx SINE Alu 1 306 -6 502 285 101 50 chr11 38946485 38946616 -109836856 - MIR SINE MIR -19 243 99 2508 129 53 26 chr11 38946616 38946962 -109836510 + MSTA LTR MaLR 1 361 -67 2083 144 14 0 chr11 38946962 38947254 -109836218 - AluSx SINE Alu -16 296 1 2508 129 53 26 chr11 38947254 38947324 -109836148 + MSTA LTR MaLR 361 428 0 502 285 101 50 chr11 38947324 38947371 -109836101 - MIR SINE MIR -163 99 56 702 251 130 13 chr11 38948404 38948635 -109834837 + MIR SINE MIR 5 262 0 687 241 98 6 chr11 38949359 38949533 -109833939 - MER20 DNA MER1_type 0 219 30 366 250 194 49 chr11 38949772 38949916 -109833556 - MIR SINE MIR -26 236 72 234 312 136 8 chr11 38950573 38950698 -109832774 + L1MC/D LINE L1 5668 5808 -2000 1928 137 29 0 chr11 38950705 38950983 -109832489 - AluJb SINE Alu -25 287 2 402 21 0 0 chr11 38951253 38951300 -109832172 + (TC)n Simple_repeat Simple_repeat 1 47 0 415 341 29 24 chr11 38952953 38953161 -109830311 - Charlie8 DNA MER1_type -2158 259 51 553 276 119 5 chr11 38953271 38953481 -109829991 - MIR SINE MIR -4 258 25 956 178 10 59 chr11 38953873 38954165 -109829307 - MLT1B LTR MaLR 0 390 51 6324 73 21 6 chr11 38954165 38955016 -109828456 + SVA Other Other 3 866 -520 1238 39 5 29 chr11 38955031 38955238 -109828234 + SVA Other Other 665 866 -520 983 102 12 74 chr11 38955255 38955511 -109827961 + SVA Other Other 549 788 -598 6645 38 12 3 chr11 38955658 38956402 -109827070 + SVA Other Other 635 1385 -1 339 148 0 16 chr11 38956402 38956463 -109827009 - MLT1B LTR MaLR -330 60 1 1590 184 26 113 chr11 38956853 38957151 -109826321 - MLT1C LTR MaLR 0 467 145 240 35 0 0 chr11 38957151 38957180 -109826292 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 1822 174 7 0 chr11 38957186 38957468 -109826004 - AluSx SINE Alu -28 284 1 1590 184 26 113 chr11 38957468 38957480 -109825992 - MLT1C LTR MaLR -327 140 129 2654 67 0 3 chr11 38957480 38957792 -109825680 - AluY SINE Alu 0 311 1 1590 184 26 113 chr11 38957792 38957978 -109825494 - MLT1C LTR MaLR -338 129 7 2315 109 6 0 chr11 38958233 38958544 -109824928 - AluSq SINE Alu 0 313 1 254 306 131 79 chr11 38959347 38959576 -109823896 - L2 LINE L2 0 3272 3032 1830 171 0 10 chr11 38960623 38960921 -109822551 + AluJo SINE Alu 4 298 -14 1799 89 0 8 chr11 38960923 38961158 -109822314 + AluY SINE Alu 78 310 -1 189 337 112 0 chr11 38961443 38961541 -109821931 + L2 LINE L2 2918 3026 -246 215 250 0 0 chr11 38961701 38961741 -109821731 + MER91 DNA MER1_type 26 65 -75 485 281 121 21 chr11 38961760 38961964 -109821508 - MIR SINE MIR -34 228 4 569 249 41 86 chr11 38962663 38962860 -109820612 - MIR3 SINE MIR -1 207 20 897 208 11 0 chr11 38963109 38963292 -109820180 + MER68 LTR ERV1 376 560 -2 330 282 99 14 chr11 38963381 38963523 -109819949 + MIR SINE MIR 30 183 -79 250 279 192 0 chr11 38963553 38963657 -109819815 + L2 LINE L2 3186 3309 -4 287 293 50 57 chr11 38964394 38964534 -109818938 + MIR3 SINE MIR 29 167 -41 276 258 226 0 chr11 38964849 38964973 -109818499 - MER103 DNA DNA -7 159 8 735 243 32 26 chr11 38965883 38966072 -109817400 + MIR SINE MIR 45 234 -28 256 237 66 13 chr11 38966102 38966178 -109817294 + L2 LINE L2 3188 3267 -5 344 167 0 50 chr11 38966386 38966446 -109817026 + MER5B DNA MER1_type 2 58 -120 795 284 42 85 chr11 38968667 38969114 -109814358 + L2 LINE L2 2886 3313 0 1365 124 81 15 chr11 38969163 38969422 -109814050 - L1MA6 LINE L1 0 6300 6025 1612 190 3 7 chr11 38969560 38969855 -109813617 + AluJb SINE Alu 1 294 -18 1595 146 37 48 chr11 38969857 38970151 -109813321 + AluJb SINE Alu 1 291 -21 211 330 41 10 chr11 38971075 38971172 -109812300 - MIR SINE MIR -67 141 42 2316 85 0 0 chr11 38971186 38971469 -109812003 - AluSq SINE Alu -30 283 1 321 278 33 20 chr11 38971573 38971724 -109811748 - MIR SINE MIR -4 258 106 241 259 0 12 chr11 38971810 38971891 -109811581 + (TA)n Simple_repeat Simple_repeat 2 81 0 212 175 0 25 chr11 38971896 38971936 -109811536 - L2 LINE L2 -82 3231 3193 279 0 0 0 chr11 38971950 38971981 -109811491 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 251 190 17 0 chr11 38974076 38974134 -109809338 + GA-rich Low_complexity Low_complexity 1 59 0 973 283 113 38 chr11 38975331 38975967 -109807505 - L1ME4a LINE L1 -6 6115 5432 441 125 0 31 chr11 38976316 38976412 -109807060 + (TCCC)n Simple_repeat Simple_repeat 1 93 0 530 242 176 0 chr11 38977107 38977260 -109806212 - MER5A DNA MER1_type 0 189 10 419 141 152 20 chr11 38977291 38977390 -109806082 + MLT1C LTR MaLR 6 117 -350 2056 162 63 33 chr11 38977396 38977792 -109805680 - MLT2D LTR ERVL -5 409 2 1267 189 37 109 chr11 38977792 38978170 -109805302 + MLT1C LTR MaLR 118 466 -1 270 81 0 0 chr11 38978850 38978887 -109804585 + (T)n Simple_repeat Simple_repeat 1 37 0 4204 125 20 20 chr11 38979524 38980228 -109803244 - L1MA4 LINE L1 -5 6295 5592 2596 116 0 5 chr11 38980239 38980609 -109802863 - L1PB1 LINE L1 -1 6866 6499 233 119 0 0 chr11 38980611 38980653 -109802819 + LTR66 LTR ERVL 398 439 -171 249 159 0 0 chr11 38980653 38980697 -109802775 + (TA)n Simple_repeat Simple_repeat 2 45 0 243 133 0 0 chr11 38980698 38980743 -109802729 - LTR66 LTR ERVL -172 438 394 9346 179 8 24 chr11 38980745 38981176 -109802296 - L1PB1 LINE L1 -361 6506 6069 2234 92 0 0 chr11 38981176 38981458 -109802014 - AluSc SINE Alu -11 298 17 9346 179 8 24 chr11 38981458 38983561 -109799911 - L1PB1 LINE L1 -798 6069 4008 4864 32 0 0 chr11 38983562 38984120 -109799352 - L1PA5 LINE L1 -1 6153 5596 6774 52 11 16 chr11 38984130 38985058 -109798414 + L1P2 LINE L1 4534 5461 -693 2405 84 7 3 chr11 38985058 38985368 -109798104 + AluY SINE Alu 1 311 0 6774 52 11 16 chr11 38985368 38985527 -109797945 + L1P2 LINE L1 5461 5619 -535 * 10667 132 41 11 chr11 38985513 38988161 -109795311 - L1PB1 LINE L1 -2837 4025 1292 876 109 159 0 chr11 38988166 38988304 -109795168 - L1PB1 LINE L1 -5705 1158 999 1296 109 0 0 chr11 38988319 38988512 -109794960 - L1PB1 LINE L1 -6670 193 1 189 290 48 97 chr11 38989488 38989548 -109793924 - MER5A DNA MER1_type -51 138 77 2240 123 0 0 chr11 38989548 38989840 -109793632 + AluSx SINE Alu 1 292 -20 189 290 48 97 chr11 38989840 38989924 -109793548 - MER5A DNA MER1_type -112 77 1 211 329 92 0 chr11 38989991 38990067 -109793405 + MIR SINE MIR 121 203 -59 1757 156 13 25 chr11 38990067 38990382 -109793090 + AluJo SINE Alu 1 311 -1 435 285 8 8 chr11 38990685 38990808 -109792664 - L2 LINE L2 -3 3310 3188 1182 243 53 57 chr11 38990854 38991377 -109792095 - L2 LINE L2 -455 2859 2339 417 258 107 21 chr11 38991696 38991908 -109791564 - MIR SINE MIR -26 236 18 264 161 0 0 chr11 38992232 38992294 -109791178 + CT-rich Low_complexity Low_complexity 2 63 0 272 327 19 0 chr11 38993964 38994071 -109789401 + MER5A DNA MER1_type 54 162 -27 1095 241 34 100 chr11 38994105 38994321 -109789151 - L1MEd LINE L1 -5025 1094 865 2278 110 7 0 chr11 38994321 38994622 -109788850 - AluSp SINE Alu -10 303 1 1095 241 34 100 chr11 38994622 38995027 -109788445 - L1MEd LINE L1 -5254 865 514 827 267 56 16 chr11 38996391 38996642 -109786830 + MIR SINE MIR 1 261 -1 413 204 43 0 chr11 38997136 38997229 -109786243 + L1ME2 LINE L1 6068 6164 0 210 281 12 12 chr11 38997651 38997733 -109785739 + (TA)n Simple_repeat Simple_repeat 1 82 0 1990 269 111 28 chr11 38998574 38999284 -109784188 + HAL1 LINE L1 2 770 -1737 372 121 190 43 chr11 38999304 38999420 -109784052 - L1MB7 LINE L1 0 6184 6046 452 216 14 68 chr11 38999444 38999520 -109783952 - L1MB7 LINE L1 -83 6101 6035 2335 109 7 0 chr11 38999520 38999824 -109783648 + AluSx SINE Alu 1 306 -6 452 216 14 68 chr11 38999824 38999895 -109783577 - L1MB7 LINE L1 -149 6035 5962 3210 42 0 0 chr11 38999895 39000274 -109783198 - L1PA5 LINE L1 0 6154 5776 421 141 22 87 chr11 39000274 39000366 -109783106 + HAL1 LINE L1 804 889 -1618 195 184 0 0 chr11 39000380 39000418 -109783054 + G-rich Low_complexity Low_complexity 1 38 0 1352 189 0 21 chr11 39000586 39000824 -109782648 + AluJo SINE Alu 58 290 -22 2843 244 138 51 chr11 39000836 39001578 -109781894 + HAL1 LINE L1 1107 1783 -724 1692 141 4 36 chr11 39001578 39001855 -109781617 + AluJo SINE Alu 11 278 -34 369 0 0 0 chr11 39001855 39001896 -109781576 + (TC)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 39001895 39001915 -109781557 + (TA)n Simple_repeat Simple_repeat 1 20 0 2843 244 138 51 chr11 39001896 39001914 -109781558 + HAL1 LINE L1 1783 1798 -709 234 91 0 0 chr11 39001914 39001947 -109781525 + (CA)n Simple_repeat Simple_repeat 2 34 0 2843 244 138 51 chr11 39001947 39002492 -109780980 + HAL1 LINE L1 1798 2507 0 667 262 0 18 chr11 39003166 39003330 -109780142 + MIR SINE MIR 8 168 -94 516 291 33 0 chr11 39003395 39003577 -109779895 + MIR SINE MIR 75 262 0 337 263 8 34 chr11 39004121 39004239 -109779233 + MIR SINE MIR 8 122 -140 207 231 0 39 chr11 39004252 39004304 -109779168 - MIR SINE MIR -94 168 119 303 331 41 0 chr11 39004490 39004652 -109778820 - MLT1J2 LTR MaLR -6 409 281 * 501 241 23 23 chr11 39004643 39004776 -109778696 - MLT1I LTR MaLR -276 133 1 246 363 22 30 chr11 39005372 39005507 -109777965 - L2 LINE L2 -1 3271 3138 458 305 72 47 chr11 39005515 39005751 -109777721 + MIR SINE MIR 13 254 -8 213 94 0 0 chr11 39005762 39005794 -109777678 + (CAT)n Simple_repeat Simple_repeat 2 33 0 327 315 144 0 chr11 39007961 39008107 -109775365 + MIR SINE MIR 2 168 -94 205 191 24 0 chr11 39008154 39008196 -109775276 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1361 188 11 14 chr11 39008347 39008623 -109774849 + AluJo SINE Alu 1 275 -37 452 167 0 24 chr11 39008905 39008989 -109774483 + FRAM SINE Alu 71 152 -24 2386 80 3 0 chr11 39009828 39010130 -109773342 - AluY SINE Alu -8 303 1 228 67 0 0 chr11 39010497 39010527 -109772945 + (CA)n Simple_repeat Simple_repeat 2 31 0 1406 172 95 37 chr11 39010775 39010814 -109772658 - MLT1A2 LTR MaLR -6 368 333 2076 135 3 13 chr11 39010814 39011125 -109772347 + AluSx SINE Alu 1 308 -4 1406 172 95 37 chr11 39011125 39011433 -109772039 - MLT1A2 LTR MaLR -41 333 1 335 274 40 16 chr11 39011582 39011706 -109771766 + MIR SINE MIR 55 181 -81 2081 119 24 0 chr11 39012973 39013266 -109770206 - AluSq SINE Alu -12 301 2 195 286 18 0 chr11 39013431 39013487 -109769985 - MIR SINE MIR -155 107 51 601 219 19 113 chr11 39013806 39013869 -109769603 - MIR SINE MIR -10 252 185 1639 142 0 103 chr11 39013869 39014199 -109769273 - AluJo SINE Alu -6 296 1 601 219 19 113 chr11 39014199 39014391 -109769081 - MIR SINE MIR -77 185 21 220 213 0 0 chr11 39015242 39015289 -109768183 - MIR SINE MIR -128 134 88 2130 116 30 3 chr11 39015417 39015718 -109767754 - AluSq SINE Alu -4 309 1 2249 108 3 3 chr11 39017650 39017955 -109765517 - AluSg SINE Alu -5 305 1 726 244 105 66 chr11 39017983 39018315 -109765157 - MLT1F1 LTR MaLR -122 445 101 1199 200 96 4 chr11 39018319 39018559 -109764913 + AluJb SINE Alu 1 262 -50 226 294 10 69 chr11 39018728 39018830 -109764642 - L2 LINE L2 -455 2859 2764 786 171 21 88 chr11 39018987 39019180 -109764292 + L1MD3 LINE L1 6800 6979 -1016 949 241 51 83 chr11 39019182 39019556 -109763916 - MLT1A1 LTR MaLR 0 365 4 2432 204 151 33 chr11 39019563 39020283 -109763189 + L1MC4a LINE L1 6111 6182 -60 2402 79 0 0 chr11 39020283 39020587 -109762885 - AluSg SINE Alu -6 304 1 2432 204 151 33 chr11 39020587 39020657 -109762815 + L1MC4a LINE L1 6182 6242 0 21 0 0 0 chr11 39020990 39021011 -109762461 + AT_rich Low_complexity Low_complexity 1 21 0 219 228 18 0 chr11 39021095 39021152 -109762320 + L2 LINE L2 3215 3272 0 795 231 12 12 chr11 39022038 39022207 -109761265 - MER58A DNA MER1_type -36 188 20 574 363 172 9 chr11 39022260 39022591 -109760881 - L2 LINE L2 -499 2815 2431 456 70 0 0 chr11 39023440 39023497 -109759975 + AluJb SINE Alu 240 296 -16 331 223 18 0 chr11 39023956 39024068 -109759404 + CT-rich Low_complexity Low_complexity 5 118 0 437 271 68 8 chr11 39025597 39025715 -109757757 + MIR3 SINE MIR 39 163 -45 1096 255 135 10 chr11 39025816 39026361 -109757111 - L2 LINE L2 -48 3265 2640 319 222 0 0 chr11 39027296 39027359 -109756113 - MER103 DNA DNA -44 122 60 854 268 28 12 chr11 39027368 39027616 -109755856 - MIR SINE MIR -1 261 9 367 260 244 0 chr11 39027879 39028006 -109755466 + MIR SINE MIR 26 183 -79 324 167 119 196 chr11 39028333 39028501 -109754971 + MIR SINE MIR 16 170 -92 2076 163 54 50 chr11 39028505 39028965 -109754507 - MLT1C LTR MaLR 0 467 6 521 238 10 2 chr11 39029697 39029826 -109753646 + L1MC/D LINE L1 5682 5811 -365 666 207 0 0 chr11 39029952 39030063 -109753409 + MER58A DNA MER1_type 8 118 0 408 165 0 93 chr11 39030063 39030138 -109753334 + MER58 DNA MER1_type 2355 2420 0 24 32 0 0 chr11 39030217 39030248 -109753224 + AT_rich Low_complexity Low_complexity 1 31 0 2998 200 54 97 chr11 39030281 39031833 -109751639 + L1ME1 LINE L1 4687 6161 -5 1918 108 3 67 chr11 39031993 39032307 -109751165 + AluSx SINE Alu 1 294 -18 753 183 15 0 chr11 39032449 39032580 -109750892 + FLAM_A SINE Alu 1 133 0 510 285 33 23 chr11 39032776 39032990 -109750482 - L1MC4a LINE L1 -1898 5910 5695 1694 151 3 50 chr11 39032995 39033312 -109750160 - AluJo SINE Alu -10 302 1 480 254 36 104 chr11 39033316 39033536 -109749936 - L1MC4a LINE L1 -2190 5618 5414 757 266 27 0 chr11 39033594 39033778 -109749694 - MER91B DNA MER1_type -1 189 1 1490 161 38 51 chr11 39034374 39034690 -109748782 + AluJo SINE Alu 1 312 0 629 86 7 139 chr11 39034844 39034995 -109748477 + L1MB4 LINE L1 6040 6170 -10 50 0 0 0 chr11 39034995 39035045 -109748427 + AT_rich Low_complexity Low_complexity 1 50 0 431 290 41 73 chr11 39035069 39035314 -109748158 - MIR SINE MIR -3 259 23 364 251 49 53 chr11 39035765 39035898 -109747574 + MIR SINE MIR 42 171 -66 530 118 0 0 chr11 39035933 39036009 -109747463 - L2 LINE L2 -14 3299 3224 523 289 28 33 chr11 39036507 39036687 -109746785 + MIR SINE MIR 4 182 -80 1889 115 18 4 chr11 39036716 39037024 -109746448 + AluSx SINE Alu 1 312 0 451 246 197 11 chr11 39037082 39037265 -109746207 - MIR SINE MIR -44 218 2 2391 186 24 14 chr11 39037436 39037936 -109745536 - L1MB7 LINE L1 0 6184 5680 248 254 0 0 chr11 39038510 39038565 -109744907 - MIR SINE MIR -50 212 158 230 204 0 37 chr11 39038569 39038623 -109744849 + L1MB8 LINE L1 6044 6095 -83 341 211 0 14 chr11 39038624 39038695 -109744777 - MIR SINE MIR -116 146 77 202 339 0 0 chr11 39038777 39038833 -109744639 + L2 LINE L2 3258 3313 0 898 296 4 8 chr11 39039312 39039562 -109743910 + MIR SINE MIR 2 250 -12 249 139 0 0 chr11 39042218 39042261 -109741211 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 26 74 0 0 chr11 39042593 39042647 -109740825 + AT_rich Low_complexity Low_complexity 1 54 0 2125 61 0 61 chr11 39043852 39044148 -109739324 - AluY SINE Alu -12 299 22 401 241 25 96 chr11 39044394 39044593 -109738879 - MLT1K LTR MaLR -3 585 401 755 232 33 50 chr11 39045571 39045812 -109737660 - MLT1J1 LTR MaLR -185 261 25 273 29 0 0 chr11 39046031 39046065 -109737407 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1619 179 0 0 chr11 39046065 39046345 -109737127 - AluJb SINE Alu -32 280 1 326 275 25 17 chr11 39046482 39046602 -109736870 + L2 LINE L2 2853 2973 -341 498 296 71 30 chr11 39047300 39047567 -109735905 - MLT2E LTR ERVL 0 628 351 374 270 113 0 chr11 39047614 39047729 -109735743 + LTR67 LTR ERVL 430 557 0 316 315 70 28 chr11 39047753 39047896 -109735576 + MIR3 SINE MIR 19 167 -41 2266 110 131 11 chr11 39048135 39048517 -109734955 + MSTA LTR MaLR 1 428 0 325 329 99 24 chr11 39048623 39048692 -109734780 - MIR SINE MIR 0 262 200 857 205 83 5 chr11 39048692 39048897 -109734575 + MER58A DNA MER1_type 1 221 -3 325 329 99 24 chr11 39048897 39049040 -109734432 - MIR SINE MIR -62 200 34 1471 151 59 46 chr11 39049737 39050041 -109733431 - AluJo SINE Alu 0 312 5 189 243 0 0 chr11 39050433 39050470 -109733002 + MIR SINE MIR 108 144 -118 917 225 29 32 chr11 39051061 39051318 -109732154 - MIR SINE MIR -6 256 2 325 263 20 50 chr11 39052123 39052222 -109731250 + MIR SINE MIR 16 111 -97 260 307 111 26 chr11 39052393 39052546 -109730926 - L2 LINE L2 -2 3270 3105 1028 276 122 35 chr11 39052590 39053051 -109730421 - MLT1J LTR MaLR -8 503 3 1257 274 125 22 chr11 39053228 39053691 -109729781 - LTR33A LTR ERVL -11 512 2 2287 193 88 4 chr11 39053879 39054345 -109729127 - MLT1D LTR MaLR 0 505 1 392 270 52 65 chr11 39054769 39054999 -109728473 - MLT1J LTR MaLR -175 336 110 387 272 10 10 chr11 39055360 39055463 -109728009 - MIR SINE MIR -86 176 74 1629 76 0 14 chr11 39055664 39055938 -109727534 + AluY SINE Alu 63 333 0 786 189 16 70 chr11 39056131 39056316 -109727156 - L2 LINE L2 -2 3311 3137 313 252 86 65 chr11 39057010 39057149 -109726323 - HAL1b LINE L1 -1198 150 9 1591 168 50 99 chr11 39057589 39057838 -109725634 - MLT1B LTR MaLR 0 390 167 1408 186 62 7 chr11 39057838 39058129 -109725343 - AluJo SINE Alu -5 307 1 1591 168 50 99 chr11 39058129 39058283 -109725189 - MLT1B LTR MaLR -223 167 7 744 241 54 35 chr11 39058991 39059194 -109724278 + MER63A DNA MER1_type 1 207 -3 281 281 0 0 chr11 39059922 39059979 -109723493 + L2 LINE L2 3162 3218 -54 1263 237 147 41 chr11 39060233 39060723 -109722749 + MLT1F LTR MaLR 1 542 0 294 212 61 98 chr11 39061900 39062032 -109721440 + MIR3 SINE MIR 14 140 -68 1202 117 0 11 chr11 39062083 39062262 -109721210 - MER96B DNA MER1_type? 0 417 241 656 323 11 35 chr11 39062404 39062664 -109720808 + MIR SINE MIR 1 254 -8 786 154 160 13 chr11 39063343 39063499 -109719973 - MER5A DNA MER1_type -4 185 7 766 252 81 40 chr11 39063503 39063725 -109719747 + MIR SINE MIR 31 261 -1 304 329 206 7 chr11 39063975 39064130 -109719342 - MIR SINE MIR -65 197 12 188 306 69 0 chr11 39064226 39064298 -109719174 - L2 LINE L2 -93 3220 3144 424 235 295 31 chr11 39064316 39064663 -109718809 + MLT1J1 LTR MaLR 1 403 -6 233 311 122 0 chr11 39064748 39064822 -109718650 + MER5B DNA MER1_type 65 147 -31 199 245 0 0 chr11 39064970 39065019 -109718453 + MIR SINE MIR 144 192 -70 355 83 0 0 chr11 39065025 39065073 -109718399 - MLT1F LTR MaLR 0 542 495 2947 120 23 10 chr11 39065074 39065667 -109717805 - MER4E LTR ERV1 0 766 1 1411 237 189 2 chr11 39065667 39066079 -109717393 - MLT1F LTR MaLR -45 497 9 872 263 46 5 chr11 39066550 39066767 -109716705 + MIR SINE MIR 7 232 -30 628 308 201 9 chr11 39067495 39068082 -109715390 - L2 LINE L2 -51 3262 2548 212 210 0 16 chr11 39068929 39068991 -109714481 + GA-rich Low_complexity Low_complexity 4 64 0 230 321 71 0 chr11 39069435 39069519 -109713953 - L2 LINE L2 -14 3258 3169 240 233 27 14 chr11 39069653 39069726 -109713746 + L2 LINE L2 2986 3059 -213 365 326 14 21 chr11 39070001 39070142 -109713330 - MER5B DNA MER1_type -2 176 37 864 232 52 34 chr11 39070147 39070380 -109713092 + L1MC4a LINE L1 5684 5920 -1888 371 224 0 0 chr11 39070394 39070461 -109713011 - MER58 DNA MER1_type -10 2410 2344 266 252 84 9 chr11 39071071 39071178 -109712294 + MIR SINE MIR 77 191 -71 1420 154 94 50 chr11 39071580 39071928 -109711544 + AluJo SINE Alu 1 361 0 214 294 71 12 chr11 39072233 39072318 -109711154 - L2 LINE L2 -14 3258 3169 190 104 21 21 chr11 39072512 39072560 -109710912 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 378 314 68 71 chr11 39072864 39073217 -109710255 - L2 LINE L2 -3 3310 2959 434 289 69 35 chr11 39073468 39073728 -109709744 - MER102a DNA MER1_type -29 301 33 279 0 0 0 chr11 39073826 39073857 -109709615 + (TG)n Simple_repeat Simple_repeat 2 32 0 839 186 50 0 chr11 39074314 39074475 -109708997 + FRAM SINE Alu 5 173 -3 180 341 11 11 chr11 39074580 39074671 -109708801 - L3 LINE CR1 -119 1458 1368 282 224 9 121 chr11 39074737 39074853 -109708619 - L2 LINE L2 -19 3294 3192 276 77 0 0 chr11 39074892 39074931 -109708541 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr11 39075044 39075093 -109708379 + AT_rich Low_complexity Low_complexity 1 49 0 1309 208 36 15 chr11 39075571 39076016 -109707456 - MER41-int LTR ERV1 -1913 3023 2470 336 263 44 29 chr11 39076036 39076173 -109707299 - MER41-int LTR ERV1 -2158 3788 3650 293 135 96 0 chr11 39076288 39076340 -109707132 - MLT2B1 LTR ERVL 0 520 464 497 238 98 14 chr11 39076377 39076520 -109706952 + MIR SINE MIR 73 227 -35 3176 60 44 14 chr11 39077114 39077546 -109705926 - L1PA6 LINE L1 -2 6152 5708 527 271 0 7 chr11 39077598 39077742 -109705730 - L1ME LINE L1 -470 5651 5509 321 242 25 56 chr11 39077776 39077937 -109705535 + L1ME4a LINE L1 5966 6121 0 247 298 223 0 chr11 39078243 39078364 -109705108 - MIR SINE MIR -50 212 65 492 221 74 20 chr11 39078407 39078556 -109704916 - MLT1L LTR MaLR -61 554 398 351 239 32 39 chr11 39078680 39078835 -109704637 + L1ME4a LINE L1 5966 6119 -2 424 252 111 107 chr11 39078869 39079167 -109704305 - MLT1L LTR MaLR -289 326 28 296 248 95 51 chr11 39079653 39079790 -109703682 + MLT1I LTR MaLR 1 143 -266 1087 167 17 70 chr11 39080583 39080870 -109702602 + L1MB8 LINE L1 5902 6173 -5 501 236 9 0 chr11 39081022 39081132 -109702340 - MER81 DNA DNA -2 112 2 337 252 143 25 chr11 39081266 39081385 -109702087 - MIR SINE MIR -102 160 28 595 241 50 0 chr11 39081542 39081683 -109701789 + MIR SINE MIR 4 151 -111 259 191 29 0 chr11 39081698 39081766 -109701706 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 255 250 11 23 chr11 39081769 39081857 -109701615 + MIR SINE MIR 164 250 -12 333 234 43 11 chr11 39082201 39082295 -109701177 - MIR SINE MIR -119 143 47 1807 206 58 104 chr11 39082330 39082898 -109700574 - MLT1F LTR MaLR 0 542 1 279 356 0 10 chr11 39084425 39084529 -109698943 + MIR SINE MIR 19 121 -87 2218 89 0 0 chr11 39084931 39085213 -109698259 - AluSg1 SINE Alu -27 282 1 339 244 44 75 chr11 39085459 39085619 -109697853 + L2 LINE L2 3159 3313 0 224 259 0 35 chr11 39085625 39085683 -109697789 - MIR SINE MIR -133 75 20 985 237 127 32 chr11 39085773 39086089 -109697383 - L1ME3A LINE L1 -19 6151 5806 228 299 5 43 chr11 39086306 39086490 -109696982 + (CACCC)n Simple_repeat Simple_repeat 3 179 0 719 263 0 3 chr11 39086776 39087081 -109696391 + (TGG)n Simple_repeat Simple_repeat 1 304 0 249 182 0 0 chr11 39087363 39087418 -109696054 + (CCA)n Simple_repeat Simple_repeat 3 57 0 1256 274 46 29 chr11 39087835 39088129 -109695343 - LTR16C LTR ERVL -2 489 187 2306 109 3 0 chr11 39088129 39088432 -109695040 + AluSc SINE Alu 1 304 -5 1256 274 46 29 chr11 39088432 39088484 -109694988 - LTR16C LTR ERVL -304 187 137 384 237 0 63 chr11 39089241 39089372 -109694100 + L1MC4a LINE L1 5706 5826 -297 488 276 102 31 chr11 39089977 39090202 -109693270 + MIR SINE MIR 15 255 -7 675 245 40 20 chr11 39091299 39091499 -109691973 + MIR SINE MIR 2 205 -57 493 306 58 0 chr11 39092215 39092388 -109691084 + MIR SINE MIR 53 235 -27 396 301 80 0 chr11 39092545 39092708 -109690764 + MIR SINE MIR 87 262 0 856 198 104 0 chr11 39093505 39093707 -109689765 - MER58A DNA MER1_type 0 224 2 3477 150 22 81 chr11 39093711 39094443 -109689029 - LTR8 LTR ERV1 -2 689 1 433 224 127 18 chr11 39094666 39094831 -109688641 + MIR SINE MIR 25 214 -48 340 205 41 98 chr11 39095139 39095168 -109688304 - MIR SINE MIR -77 185 156 4199 141 14 34 chr11 39095168 39095202 -109688270 - L1MB8 LINE L1 -5 6173 6140 1670 204 65 0 chr11 39095202 39095540 -109687932 - MLT1A1 LTR MaLR -3 362 3 4199 141 14 34 chr11 39095540 39096290 -109687182 - L1MB8 LINE L1 -38 6140 5405 340 205 41 98 chr11 39096290 39096382 -109687090 - MIR SINE MIR -106 156 71 378 269 52 21 chr11 39096478 39096637 -109686835 + L1MC4a LINE L1 5778 5947 -174 223 246 102 68 chr11 39096668 39096786 -109686686 + L2 LINE L2 3187 3308 -5 316 365 6 33 chr11 39097806 39097987 -109685485 + L2 LINE L2 2507 2682 -632 648 301 31 13 chr11 39098006 39098232 -109685240 + MIR SINE MIR 2 231 -31 2062 121 0 13 chr11 39098263 39098576 -109684896 - AluSx SINE Alu -3 309 1 188 329 149 19 chr11 39098638 39098799 -109684673 + L2 LINE L2 2794 2975 -339 360 236 67 106 chr11 39098965 39099295 -109684177 - L1MC5 LINE L1 -36 7925 7609 195 42 0 0 chr11 39100231 39100255 -109683217 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 2388 148 59 12 chr11 39100547 39100952 -109682520 + MSTB LTR MaLR 1 424 -2 213 39 0 0 chr11 39101178 39101204 -109682268 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 287 127 40 chr11 39101328 39101478 -109681994 + MIR SINE MIR 46 208 -54 2160 149 5 68 chr11 39102005 39102364 -109681108 + MLT1B LTR MaLR 1 332 -58 3540 130 21 4 chr11 39102364 39102880 -109680592 + MER1A DNA MER1_type 3 527 0 2160 149 5 68 chr11 39102880 39102935 -109680537 + MLT1B LTR MaLR 332 389 -1 573 246 152 6 chr11 39103901 39104072 -109679400 + MIR SINE MIR 48 243 -19 227 280 0 0 chr11 39104176 39104226 -109679246 + MIR SINE MIR 9 58 -204 581 242 129 0 chr11 39105489 39105667 -109677805 + MIR SINE MIR 47 247 -15 469 324 12 6 chr11 39105905 39106078 -109677394 - Charlie8 DNA MER1_type -2152 265 92 2229 149 6 6 chr11 39106225 39106588 -109676884 + MLT1A1 LTR MaLR 2 364 -1 386 118 0 106 chr11 39106934 39107033 -109676439 + L1M4 LINE L1 5417 5500 -678 2297 149 27 89 chr11 39107052 39107120 -109676352 + L1MB8 LINE L1 5422 5493 -685 1488 164 0 92 chr11 39107120 39107424 -109676048 + AluJo SINE Alu 1 276 -36 2297 149 27 89 chr11 39107424 39107880 -109675592 + L1MB8 LINE L1 5493 5913 -265 581 205 27 68 chr11 39107911 39108139 -109675333 + L1MB8 LINE L1 5891 6107 -71 610 256 55 73 chr11 39109122 39109302 -109674170 + MLT1K LTR MaLR 311 486 -102 938 244 23 14 chr11 39109302 39109523 -109673949 - MER58A DNA MER1_type 0 224 2 610 256 55 73 chr11 39109523 39109615 -109673857 + MLT1K LTR MaLR 486 578 -10 268 294 46 0 chr11 39109992 39110101 -109673371 + MIR3 SINE MIR 45 158 -50 1403 85 0 0 chr11 39110106 39110282 -109673190 - AluSg/x SINE Alu -8 304 129 248 258 119 50 chr11 39110414 39110573 -109672899 + MIR SINE MIR 72 241 -21 * 590 327 18 0 chr11 39110555 39110772 -109672700 + MIR SINE MIR 15 235 -27 22 0 0 0 chr11 39110961 39110983 -109672489 + AT_rich Low_complexity Low_complexity 1 22 0 262 315 94 38 chr11 39111068 39111335 -109672137 - MLT1L LTR MaLR -125 490 209 2203 143 29 18 chr11 39111556 39111942 -109671530 - MLT1B LTR MaLR 0 390 1 1165 216 204 45 chr11 39112599 39113001 -109670471 + MLT1C LTR MaLR 1 466 -1 260 287 11 11 chr11 39113455 39113549 -109669923 + MLT1K LTR MaLR 492 585 -3 800 213 19 19 chr11 39113597 39113757 -109669715 + FRAM SINE Alu 1 152 -24 2082 254 65 11 chr11 39113761 39114403 -109669069 + L1ME3 LINE L1 5467 6143 -19 250 26 0 0 chr11 39114416 39114454 -109669018 + L1MA3 LINE L1 6268 6305 0 266 252 61 8 chr11 39114578 39114709 -109668763 - L1ME4a LINE L1 -16 6105 5968 6280 63 1 3 chr11 39114840 39115620 -109667852 - LTR17 LTR ERV1 0 780 2 245 270 79 33 chr11 39115650 39115802 -109667670 - L1ME4a LINE L1 -340 5781 5623 260 306 12 0 chr11 39115848 39115933 -109667539 - L1ME4a LINE L1 -510 5611 5526 606 254 76 80 chr11 39115948 39116166 -109667306 - L1MC5 LINE L1 -36 7925 7708 315 0 0 0 chr11 39116166 39116201 -109667271 + (CA)n Simple_repeat Simple_repeat 2 36 0 606 254 76 80 chr11 39116201 39116545 -109666927 - L1MC5 LINE L1 -253 7708 7365 186 43 0 0 chr11 39116545 39116568 -109666904 + (CCCCCA)n Simple_repeat Simple_repeat 6 28 0 4918 139 43 31 chr11 39117045 39117938 -109665534 + MER4D LTR ERV1 1 903 0 2368 139 71 3 chr11 39118140 39118524 -109664948 + MSTA LTR MaLR 1 346 -18 1042 211 67 96 chr11 39118741 39119262 -109664210 - MER31-int LTR ERV1 -125 6206 4411 333 189 123 38 chr11 39119293 39119399 -109664073 - LTR37A LTR ERV1 -311 115 1 5318 183 21 70 chr11 39119400 39120666 -109662806 - MER31-int LTR ERV1 -687 4249 3048 2062 145 3 0 chr11 39120666 39120969 -109662503 - AluSq SINE Alu -9 304 1 5318 183 21 70 chr11 39120969 39121026 -109662446 - MER31-int LTR ERV1 -1888 3048 2990 280 311 28 44 chr11 39121128 39121195 -109662277 + L2 LINE L2 2484 2551 -763 2643 145 22 0 chr11 39121195 39121610 -109661862 + MSTB LTR MaLR 1 424 -2 280 311 28 44 chr11 39121610 39121722 -109661750 + L2 LINE L2 2551 2660 -654 378 192 30 30 chr11 39121731 39121830 -109661642 - MLT1J LTR MaLR -9 502 404 2675 237 34 16 chr11 39121840 39122524 -109660948 + L1ME1 LINE L1 5451 6146 -20 999 185 158 65 chr11 39122568 39122936 -109660536 - MLT1J LTR MaLR -108 403 2 269 309 33 46 chr11 39122953 39123105 -109660367 + L2 LINE L2 2698 2847 -467 246 295 135 48 chr11 39123280 39123487 -109659985 + L2 LINE L2 3089 3313 0 1745 153 80 0 chr11 39123733 39124008 -109659464 - AluJb SINE Alu -15 297 1 356 143 162 19 chr11 39124768 39124873 -109658599 + MER113 DNA MER1_type? 24 143 -378 1922 140 14 10 chr11 39124881 39125173 -109658299 - AluJb SINE Alu -19 293 1 198 0 0 0 chr11 39125173 39125195 -109658277 + (T)n Simple_repeat Simple_repeat 1 22 0 297 234 85 32 chr11 39125221 39125315 -109658157 + L2 LINE L2 3173 3271 -1 230 326 12 12 chr11 39125550 39125636 -109657836 + L2 LINE L2 3187 3272 0 208 229 60 72 chr11 39125636 39125719 -109657753 - MIR SINE MIR -78 184 103 1348 215 56 53 chr11 39125820 39126160 -109657312 + MLT1A1 LTR MaLR 23 363 -2 562 277 168 12 chr11 39126444 39126828 -109656644 - MLT1J LTR MaLR -3 508 1 595 92 0 0 chr11 39127381 39127457 -109656015 - AluSg/x SINE Alu -23 286 211 2500 105 6 25 chr11 39127457 39127819 -109655653 + THE1A LTR MaLR 1 355 0 1590 133 0 0 chr11 39127819 39128037 -109655435 - AluSq SINE Alu -95 218 1 845 234 84 0 chr11 39128147 39128374 -109655098 - MIR SINE MIR -10 252 7 570 274 107 28 chr11 39128752 39129004 -109654468 + Charlie8 DNA MER1_type 1 272 -2145 372 254 249 11 chr11 39129106 39129291 -109654181 - MIR SINE MIR -28 234 6 185 277 0 84 chr11 39130274 39130357 -109653115 + MIR SINE MIR 123 198 -64 329 349 121 6 chr11 39132352 39132518 -109650954 - MIR SINE MIR -58 204 20 701 90 120 0 chr11 39132579 39132746 -109650726 + AluSx SINE Alu 5 191 -121 308 195 126 69 chr11 39133204 39133363 -109650109 - L1MD1 LINE L1 -299 5943 5776 679 206 30 12 chr11 39133460 39133625 -109649847 - AluSx SINE Alu -23 286 119 240 86 0 0 chr11 39133627 39133662 -109649810 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 966 127 0 8 chr11 39133664 39133798 -109649674 - AluSx SINE Alu -179 133 1 8422 207 49 31 chr11 39133799 39135922 -109647550 - L1MDa LINE L1 -1770 4770 2687 1796 163 0 3 chr11 39135922 39136243 -109647229 - AluJb SINE Alu 0 320 1 8422 207 49 31 chr11 39136243 39136803 -109646669 - L1MDa LINE L1 -3853 2687 2139 2404 207 32 43 chr11 39136803 39137363 -109646109 + MLT2B3 LTR ERVL 1 554 0 8422 207 49 31 chr11 39137363 39139110 -109644362 - L1MDa LINE L1 -4401 2139 17 1994 162 0 0 chr11 39139946 39140242 -109643230 - AluJb SINE Alu -16 296 1 606 252 197 17 chr11 39140355 39140645 -109642827 - LTR16C LTR ERVL -53 438 97 267 247 107 81 chr11 39141636 39142057 -109641415 - L1ME4a LINE L1 0 6121 5690 290 340 89 25 chr11 39142078 39142360 -109641112 - L1ME4a LINE L1 -2182 5626 5327 945 224 67 55 chr11 39144143 39144322 -109639150 - Charlie7 DNA MER1_type -1927 685 509 2253 102 0 0 chr11 39144322 39144616 -109638856 + AluSc SINE Alu 2 295 -14 945 224 67 55 chr11 39144616 39144797 -109638675 - Charlie7 DNA MER1_type -2103 509 321 278 187 178 28 chr11 39144829 39144936 -109638536 - Charlie7 DNA MER1_type -2445 167 45 2249 79 45 0 chr11 39146294 39146584 -109636888 + AluY SINE Alu 1 303 -8 404 283 42 42 chr11 39146834 39147025 -109636447 + MIR SINE MIR 16 206 -56 230 223 149 50 chr11 39148088 39148209 -109635263 + MLT1K LTR MaLR 141 273 -315 493 267 33 7 chr11 39148407 39148557 -109634915 - MER74B LTR ERVL 0 622 469 1708 209 44 86 chr11 39149425 39149896 -109633576 - MER74A LTR ERVL -13 545 101 243 0 0 0 chr11 39149896 39149923 -109633549 + (TC)n Simple_repeat Simple_repeat 2 28 0 1708 209 44 86 chr11 39149923 39150020 -109633452 - MER74A LTR ERVL -457 101 1 897 227 132 53 chr11 39150020 39150377 -109633095 - MLT1I LTR MaLR -20 389 5 1773 185 13 0 chr11 39150452 39150750 -109632722 + AluJb SINE Alu 1 302 -10 32 26 0 0 chr11 39151390 39151429 -109632043 + AT_rich Low_complexity Low_complexity 1 39 0 740 277 107 36 chr11 39152186 39152597 -109630875 - MLT1J LTR MaLR -8 503 64 236 330 55 11 chr11 39152822 39152913 -109630559 + L2 LINE L2 3161 3255 -17 227 239 91 11 chr11 39153413 39153501 -109629971 + L2 LINE L2 2924 3018 -254 202 237 34 0 chr11 39154987 39155046 -109628426 + L2 LINE L2 3209 3269 -3 222 279 29 10 chr11 39155711 39155815 -109627657 + L2 LINE L2 2565 2670 -644 436 254 88 77 chr11 39155830 39156090 -109627382 + L2 LINE L2 2346 2608 -706 234 222 0 0 chr11 39156340 39156394 -109627078 + CT-rich Low_complexity Low_complexity 2 55 0 1909 93 54 0 chr11 39156394 39156652 -109626820 - AluSg SINE Alu -38 272 1 215 300 112 29 chr11 39156667 39156837 -109626635 - L2 LINE L2 -148 3165 2982 632 277 15 5 chr11 39156959 39157161 -109626311 - MIR SINE MIR -46 216 13 2144 118 3 3 chr11 39157213 39157509 -109625963 + AluSx SINE Alu 2 297 -15 186 103 0 0 chr11 39158774 39158803 -109624669 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 323 287 11 0 chr11 39159235 39159329 -109624143 - L1ME LINE L1 -424 5697 5603 714 134 22 30 chr11 39160823 39160957 -109622515 - AluJo SINE Alu -178 134 2 2191 94 7 3 chr11 39160987 39161286 -109622186 + AluY SINE Alu 1 300 -11 377 325 47 0 chr11 39161287 39161499 -109621973 + L1MC4a LINE L1 5690 5911 -1897 1203 207 5 0 chr11 39161804 39162012 -109621460 - MER58A DNA MER1_type -9 215 7 609 320 88 12 chr11 39162316 39162647 -109620825 + L3 LINE CR1 912 1267 -310 486 287 5 69 chr11 39162869 39163057 -109620415 + MIR SINE MIR 77 252 -10 220 317 50 37 chr11 39163706 39163867 -109619605 - MIR SINE MIR -26 236 74 2117 120 17 0 chr11 39163984 39164284 -109619188 + AluSx SINE Alu 1 305 -7 206 296 14 14 chr11 39165034 39165105 -109618367 - L2 LINE L2 -665 2649 2579 480 169 9 5 chr11 39165111 39165333 -109618139 + (TG)n Simple_repeat Simple_repeat 1 223 0 557 261 169 0 chr11 39166434 39166641 -109616831 - MIR SINE MIR 0 262 21 2207 108 0 41 chr11 39166653 39166967 -109616505 - AluSx SINE Alu -11 301 1 2076 145 7 0 chr11 39167020 39167316 -109616156 - AluJb SINE Alu -14 298 1 205 268 62 27 chr11 39167424 39167536 -109615936 - L2 LINE L2 -1387 1927 1812 10588 130 25 2 chr11 39167556 39169183 -109614289 + Tigger1 DNA MER2_type 1 1663 -755 3731 116 32 28 chr11 39169174 39169776 -109613696 + Tigger1 DNA MER2_type 1815 2418 0 * 531 218 21 42 chr11 39170172 39170314 -109613158 + MIR3 SINE MIR 39 177 -31 32 43 0 0 chr11 39170550 39170596 -109612876 + AT_rich Low_complexity Low_complexity 1 46 0 1907 133 30 0 chr11 39170867 39171138 -109612334 + AluSx SINE Alu 1 279 -33 489 47 0 0 chr11 39171138 39171202 -109612270 + (CA)n Simple_repeat Simple_repeat 1 64 0 182 225 50 0 chr11 39171469 39171509 -109611963 - L2 LINE L2 -8 3305 3264 635 216 108 0 chr11 39172042 39172181 -109611291 + MER45A DNA AcHobo 24 177 -1 2160 188 17 23 chr11 39172186 39172664 -109610808 + Charlie1b DNA MER1_type 41 515 -8 204 283 211 26 chr11 39172922 39173074 -109610398 + L3 LINE CR1 1382 1561 -16 229 229 33 0 chr11 39173738 39173799 -109609673 + CT-rich Low_complexity Low_complexity 1 63 0 955 187 57 57 chr11 39175129 39175359 -109608113 + MIR SINE MIR 12 241 -21 763 274 91 25 chr11 39175463 39175704 -109607768 + MIR SINE MIR 3 259 -3 265 318 45 11 chr11 39175879 39175967 -109607505 + MIR SINE MIR 36 126 -136 207 349 0 24 chr11 39176001 39176084 -109607388 - L2 LINE L2 -1 3312 3232 279 271 31 21 chr11 39176097 39176193 -109607279 + MIR SINE MIR 160 256 -6 621 285 33 24 chr11 39177198 39177423 -109606049 + MIR SINE MIR 5 235 -27 210 175 25 0 chr11 39177513 39177553 -109605919 + GA-rich Low_complexity Low_complexity 1 41 0 253 226 16 32 chr11 39177971 39178033 -109605439 + C-rich Low_complexity Low_complexity 1 61 0 291 253 0 69 chr11 39178478 39178565 -109604907 - MIR SINE MIR -26 236 156 309 100 0 0 chr11 39178839 39178889 -109604583 + (TC)n Simple_repeat Simple_repeat 1 50 0 2584 285 95 19 chr11 39178908 39179579 -109603893 - L2 LINE L2 -2215 1099 329 2099 170 92 22 chr11 39179579 39180068 -109603404 + Charlie1b DNA MER1_type 1 523 0 2584 285 95 19 chr11 39180068 39180374 -109603098 - L2 LINE L2 -2985 329 48 2048 102 3 7 chr11 39180686 39180995 -109602477 - AluSx SINE Alu 0 308 1 731 323 141 31 chr11 39181190 39181645 -109601827 + L2 LINE L2 2807 3311 -2 2203 93 0 6 chr11 39181698 39182010 -109601462 + AluSg SINE Alu 1 310 0 1991 136 3 0 chr11 39182882 39183191 -109600281 + AluSx SINE Alu 1 310 -2 545 76 13 0 chr11 39184411 39184490 -109598982 + (GGA)n Simple_repeat Simple_repeat 1 80 0 186 103 0 0 chr11 39184620 39184649 -109598823 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 366 293 72 49 chr11 39186847 39187082 -109596390 - MIR SINE MIR -18 244 14 449 242 137 13 chr11 39187960 39188113 -109595359 - MIR SINE MIR -13 249 78 21 0 0 0 chr11 39189928 39189949 -109593523 + AT_rich Low_complexity Low_complexity 1 21 0 2201 75 0 7 chr11 39189998 39190292 -109593180 + AluSc SINE Alu 1 292 -17 543 296 52 12 chr11 39190374 39190546 -109592926 + MIR3 SINE MIR 20 198 -10 451 194 284 0 chr11 39190571 39190705 -109592767 - MER5A DNA MER1_type -2 187 16 1049 146 96 20 chr11 39190735 39190934 -109592538 - MER20 DNA MER1_type 0 219 6 307 355 65 0 chr11 39190946 39191084 -109592388 + MER5B DNA MER1_type 1 147 -31 470 298 40 45 chr11 39191141 39191339 -109592133 + MIR SINE MIR 56 252 -10 371 281 16 81 chr11 39191510 39191695 -109591777 + MER102b DNA MER1_type 6 178 -163 274 239 34 23 chr11 39191693 39191781 -109591691 + MER102b DNA MER1_type 251 339 -2 * 2007 93 0 0 chr11 39191806 39192076 -109591396 - AluSx SINE Alu -2 310 41 222 237 17 17 chr11 39192738 39192782 -109590690 + CT-rich Low_complexity Low_complexity 2 48 -12 1760 174 7 0 chr11 39192782 39193092 -109590380 - AluJo SINE Alu 0 312 1 222 237 17 17 chr11 39193092 39193106 -109590366 + CT-rich Low_complexity Low_complexity 47 60 0 1695 170 35 0 chr11 39194134 39194423 -109589049 + AluJo SINE Alu 1 299 -13 600 254 14 42 chr11 39194457 39194599 -109588873 - L2 LINE L2 -15 3298 3161 570 309 73 20 chr11 39194764 39195010 -109588462 + MIR SINE MIR 4 262 0 1928 70 4 0 chr11 39195303 39195547 -109587925 + L1PA5 LINE L1 5907 6151 -3 314 254 33 41 chr11 39195741 39195863 -109587609 - MIR3 SINE MIR -20 188 68 751 237 53 68 chr11 39195958 39196224 -109587248 + MER102a DNA MER1_type 43 304 -26 203 313 138 0 chr11 39196401 39196481 -109586991 + MIR SINE MIR 23 113 -95 734 307 132 19 chr11 39196645 39196810 -109586662 - L1MC4a LINE L1 -1779 6029 5884 2489 49 0 3 chr11 39196810 39197118 -109586354 - AluY SINE Alu -4 307 1 734 307 132 19 chr11 39197118 39197431 -109586041 - L1MC4a LINE L1 -1924 5884 5497 436 309 117 9 chr11 39197492 39197715 -109585757 - MIR SINE MIR 0 262 16 1909 87 11 4 chr11 39197734 39197999 -109585473 - AluSq SINE Alu -13 300 34 500 343 84 38 chr11 39198087 39198504 -109584968 - L2 LINE L2 0 3272 2837 447 296 41 35 chr11 39198559 39198731 -109584741 + MIR SINE MIR 9 181 -81 1061 101 4 0 chr11 39199632 39199863 -109583609 + (TA)n Simple_repeat Simple_repeat 1 232 0 3796 88 3 34 chr11 39199863 39200534 -109582938 - L1P5 LINE L1 -370 5781 5126 304 276 86 55 chr11 39200535 39200698 -109582774 - MIR3 SINE MIR -9 199 32 573 163 0 0 chr11 39201053 39201145 -109582327 - FRAM SINE Alu -11 165 74 642 158 0 219 chr11 39201147 39201375 -109582097 - MER20 DNA MER1_type -41 178 1 353 238 12 0 chr11 39201508 39201588 -109581884 - L2 LINE L2 0 3313 3233 2325 131 9 6 chr11 39201604 39201940 -109581532 - MER1B DNA MER1_type 0 337 1 466 254 136 40 chr11 39202128 39202305 -109581167 + MIR SINE MIR 26 219 -43 222 290 32 0 chr11 39202751 39202813 -109580659 + MIR SINE MIR 188 251 -11 10573 109 5 11 chr11 39202973 39204505 -109578967 - L1P LINE L1 -4323 1823 301 7113 118 16 7 chr11 39205362 39206247 -109577225 - L1MA3 LINE L1 0 6305 5430 1915 147 70 17 chr11 39206247 39206602 -109576870 - THE1C LTR MaLR -1 374 1 7113 118 16 7 chr11 39206602 39207511 -109575961 - L1MA3 LINE L1 -875 5430 4493 1165 183 16 75 chr11 39207511 39207763 -109575709 + MLT1B LTR MaLR 154 390 0 245 296 57 11 chr11 39207796 39207884 -109575588 - MIR SINE MIR -4 258 167 334 262 134 55 chr11 39207970 39208116 -109575356 - MIR SINE MIR -21 241 79 1157 230 154 29 chr11 39208116 39208563 -109574909 - MLT1D LTR MaLR -2 503 1 334 262 134 55 chr11 39208563 39208580 -109574892 - MIR SINE MIR -183 79 65 499 290 73 19 chr11 39208748 39209007 -109574465 + L1MC4a LINE L1 5610 5882 -1926 976 119 20 7 chr11 39209065 39209216 -109574256 - MER3 DNA MER1_type -56 153 1 21 26 0 26 chr11 39209383 39209402 -109574070 + AT_rich Low_complexity Low_complexity 1 19 -19 1635 182 0 26 chr11 39209402 39209704 -109573768 - AluJo SINE Alu -18 294 1 21 26 0 26 chr11 39209704 39209723 -109573749 + AT_rich Low_complexity Low_complexity 19 38 0 202 288 41 0 chr11 39209867 39209940 -109573532 + MIR SINE MIR 64 139 -69 665 235 62 17 chr11 39210263 39210442 -109573030 - MIR SINE MIR -6 256 70 337 210 30 15 chr11 39210610 39210723 -109572749 + MIR SINE MIR 1 116 -92 2130 118 7 0 chr11 39210732 39211038 -109572434 - AluSg SINE Alu -2 308 1 2033 117 40 3 chr11 39211118 39211418 -109572054 - AluSx SINE Alu -1 311 1 2101 86 7 0 chr11 39211457 39211748 -109571724 - AluSp SINE Alu 0 313 21 189 343 57 0 chr11 39211749 39211819 -109571653 - L2 LINE L2 -44 3228 3155 227 280 248 32 chr11 39213571 39213696 -109569776 - MIR SINE MIR -60 202 51 355 248 74 25 chr11 39213893 39214014 -109569458 + L2 LINE L2 3146 3272 0 290 313 70 31 chr11 39214029 39214157 -109569315 + L2 LINE L2 3139 3271 -1 1830 134 10 38 chr11 39215094 39215407 -109568065 - AluJo SINE Alu -8 304 1 2122 113 10 0 chr11 39215916 39216216 -109567256 - AluSx SINE Alu -9 303 1 193 341 12 24 chr11 39217315 39217400 -109566072 - L2 LINE L2 -2 3270 3187 346 218 146 9 chr11 39217444 39217554 -109565918 - L2 LINE L2 -11 3302 3178 2063 118 10 0 chr11 39217942 39218239 -109565233 - AluSg1 SINE Alu -9 300 1 324 197 53 0 chr11 39218495 39218571 -109564901 - MIR3 SINE MIR -29 179 100 237 286 0 0 chr11 39218819 39218882 -109564590 - Charlie8 DNA MER1_type 0 2417 2355 712 274 37 5 chr11 39218925 39219115 -109564357 - Charlie8 DNA MER1_type -2216 201 6 280 269 186 32 chr11 39219163 39219319 -109564153 - MIR SINE MIR -33 229 50 1607 184 49 38 chr11 39219342 39219689 -109563783 - MLT1A2 LTR MaLR -5 369 19 691 253 99 18 chr11 39220534 39220755 -109562717 + MIR SINE MIR 20 258 -4 377 129 40 59 chr11 39220879 39221083 -109562389 + AluJo SINE Alu 3 290 -12 269 227 91 0 chr11 39221184 39221250 -109562222 + L3b LINE CR1 1266 1337 -246 2012 106 3 26 chr11 39221666 39221969 -109561503 + AluSx SINE Alu 1 296 -16 841 238 52 19 chr11 39223365 39223575 -109559897 - MIR SINE MIR 0 262 46 339 310 102 0 chr11 39223898 39224095 -109559377 + MER102a DNA MER1_type 92 308 -22 348 258 117 8 chr11 39224171 39224299 -109559173 + MIR SINE MIR 111 252 -10 686 288 47 51 chr11 39225622 39225879 -109557593 - MIR SINE MIR -1 261 6 299 293 84 84 chr11 39225817 39226032 -109557440 + MIR SINE MIR 42 256 -6 * 218 91 68 0 chr11 39227351 39227395 -109556077 + T-rich Low_complexity Low_complexity 1 47 0 7715 20 4 0 chr11 39227395 39228903 -109554569 - L1PA3 LINE L1 -3 6152 4637 1877 151 0 0 chr11 39229136 39229427 -109554045 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr11 39229430 39229456 -109554016 + AT_rich Low_complexity Low_complexity 1 26 0 413 250 68 56 chr11 39229609 39229861 -109553611 - L1MC4a LINE L1 -1853 5955 5701 350 308 19 10 chr11 39231808 39231912 -109551560 + L2 LINE L2 3168 3272 0 246 243 187 28 chr11 39232091 39232198 -109551274 + MIR SINE MIR 40 163 -99 2385 58 0 0 chr11 39232198 39232492 -109550980 + AluY SINE Alu 8 301 -10 1695 193 173 16 chr11 39233179 39233619 -109549853 - Charlie1b DNA MER1_type 0 523 15 610 233 81 35 chr11 39233790 39233990 -109549482 + MIR SINE MIR 7 211 -51 1041 219 66 8 chr11 39234012 39234254 -109549218 + MIR SINE MIR 2 257 -5 396 0 0 0 chr11 39234512 39234556 -109548916 + (CA)n Simple_repeat Simple_repeat 2 45 0 219 313 8 47 chr11 39235210 39235338 -109548134 + L2 LINE L2 3171 3293 -20 671 324 76 18 chr11 39235380 39235828 -109547644 - MER113 DNA MER1_type? -43 478 5 237 286 0 0 chr11 39236913 39236962 -109546510 + (TG)n Simple_repeat Simple_repeat 2 50 0 596 218 109 45 chr11 39237614 39238015 -109545457 + Tigger8 DNA MER2_type 131 573 -93 672 170 127 67 chr11 39238392 39238504 -109544968 + MER5A DNA MER1_type 5 132 -57 2184 98 0 3 chr11 39238504 39238799 -109544673 - AluSx SINE Alu -18 294 1 672 170 127 67 chr11 39238799 39238851 -109544621 + MER5A DNA MER1_type 132 179 -10 560 284 20 59 chr11 39238846 39239050 -109544422 - MIR SINE MIR -35 227 32 * 224 346 0 0 chr11 39239887 39239965 -109543507 + MIR SINE MIR 2 79 -183 396 302 87 13 chr11 39240034 39240183 -109543289 + MIR SINE MIR 88 247 -15 334 293 263 10 chr11 39240236 39240434 -109543038 + MIR SINE MIR 3 250 -12 291 180 0 0 chr11 39241382 39241432 -109542040 - MER45A DNA AcHobo 0 178 129 1525 287 94 15 chr11 39241552 39242071 -109541401 - MER45C DNA AcHobo -353 600 41 196 310 52 0 chr11 39242552 39242610 -109540862 + L3 LINE CR1 1514 1574 -3 383 328 41 8 chr11 39242983 39243105 -109540367 - L2 LINE L2 -4 3309 3184 1989 129 0 7 chr11 39243805 39244100 -109539372 + AluSx SINE Alu 1 293 -19 344 268 89 42 chr11 39244346 39244542 -109538930 - MIR SINE MIR -38 224 15 237 235 162 81 chr11 39244862 39244998 -109538474 + MIR SINE MIR 110 256 -6 24 32 0 0 chr11 39245123 39245154 -109538318 + AT_rich Low_complexity Low_complexity 1 31 0 323 23 23 0 chr11 39245831 39245875 -109537597 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 260 319 160 6 chr11 39246212 39246381 -109537091 + MIR SINE MIR 39 233 -29 1898 162 48 31 chr11 39246766 39247180 -109536292 - L1MB2 LINE L1 -3 6168 5748 1987 106 24 3 chr11 39247228 39247520 -109535952 - AluSx SINE Alu -14 298 1 553 360 70 29 chr11 39248932 39249274 -109534198 - L2 LINE L2 -9 3263 2908 316 149 40 27 chr11 39250403 39250477 -109532995 + MIR SINE MIR 46 120 -142 216 313 172 45 chr11 39251620 39251754 -109531718 + MIR3 SINE MIR 9 159 -49 382 159 212 106 chr11 39252321 39252366 -109531106 + MER53 DNA DNA 2 41 -148 1497 171 19 0 chr11 39252366 39252624 -109530848 + AluJb SINE Alu 32 294 -18 382 159 212 106 chr11 39252624 39252748 -109530724 + MER53 DNA DNA 41 189 0 311 250 48 12 chr11 39252905 39252989 -109530483 - MER115 DNA AcHobo -483 210 124 631 287 48 68 chr11 39254281 39254328 -109529144 + MIR SINE MIR 8 54 -208 2183 161 32 72 chr11 39254328 39254770 -109528702 - MSTB LTR MaLR 0 426 3 9142 177 22 12 chr11 39254771 39256023 -109527449 - MSTB-int LTR MaLR 0 1651 378 2172 109 0 0 chr11 39256023 39256317 -109527155 - AluSg SINE Alu -16 294 1 9142 177 22 12 chr11 39256317 39256699 -109526773 - MSTB-int LTR MaLR -1273 378 1 2331 164 28 28 chr11 39256699 39257125 -109526347 - MSTB LTR MaLR 0 426 1 631 287 48 68 chr11 39257125 39257325 -109526147 + MIR SINE MIR 52 253 -9 382 257 0 14 chr11 39257578 39257684 -109525788 + L1P4 LINE L1 5507 5607 -533 388 241 64 35 chr11 39257813 39257954 -109525518 + L1MC4a LINE L1 5755 5899 -1909 217 318 178 9 chr11 39259017 39259124 -109524348 + MIR SINE MIR 20 144 -118 542 253 58 17 chr11 39259265 39259439 -109524033 + MIR SINE MIR 79 259 -3 192 77 0 0 chr11 39260257 39260283 -109523189 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 274 325 12 0 chr11 39260290 39260370 -109523102 - L2 LINE L2 -18 3254 3174 575 297 36 36 chr11 39260789 39261011 -109522461 - MIR SINE MIR -6 256 35 249 270 0 0 chr11 39262531 39262594 -109520878 + L2 LINE L2 2737 2799 -515 260 321 37 0 chr11 39262746 39262827 -109520645 + L2 LINE L2 3169 3252 -20 253 285 80 33 chr11 39263021 39263166 -109520306 - MIR SINE MIR -63 145 6 580 240 16 0 chr11 39263855 39263980 -109519492 + MER45A DNA AcHobo 46 172 -6 637 309 20 10 chr11 39264889 39265093 -109518379 + MIR SINE MIR 7 212 -50 21 0 0 0 chr11 39266296 39266317 -109517155 + AT_rich Low_complexity Low_complexity 1 21 0 354 262 196 0 chr11 39266322 39266429 -109517043 + L2 LINE L2 3176 3303 -10 3290 142 25 23 chr11 39267002 39267564 -109515908 - MER34B LTR ERV1 0 565 3 539 301 40 75 chr11 39267796 39268222 -109515250 - L2 LINE L2 -9 3263 2853 189 309 0 0 chr11 39270955 39270997 -109512475 + L2 LINE L2 3257 3298 -15 2348 90 0 0 chr11 39271550 39271861 -109511611 + AluY SINE Alu 1 311 0 224 263 40 40 chr11 39272556 39272632 -109510840 + MIR SINE MIR 113 188 -74 678 275 53 14 chr11 39273744 39273951 -109509521 + MIR SINE MIR 27 241 -21 460 276 45 68 chr11 39274190 39274454 -109509018 - L1ME4a LINE L1 -39 6082 5825 578 252 32 35 chr11 39275317 39275554 -109507918 + MIR SINE MIR 10 244 -18 2293 91 7 3 chr11 39275567 39275865 -109507607 + AluSq SINE Alu 1 299 -14 467 313 16 0 chr11 39280113 39280241 -109503231 - L2 LINE L2 -3 3310 3181 1989 176 90 38 chr11 39280417 39280893 -109502579 - MLT1D LTR MaLR -4 501 1 301 189 47 88 chr11 39282485 39282605 -109500867 - MIR SINE MIR -79 183 71 33 85 0 0 chr11 39282840 39282922 -109500550 + AT_rich Low_complexity Low_complexity 1 82 0 1150 197 144 3 chr11 39283367 39283932 -109499540 + LTR50 LTR ERVL 8 792 -3 396 335 94 38 chr11 39284639 39285033 -109498439 + L1ME LINE L1 2 417 -5653 604 193 138 0 chr11 39285384 39285565 -109497907 + L1ME LINE L1 2051 2256 -3824 1574 149 0 21 chr11 39285640 39285881 -109497591 - MER46A DNA MER2_type 0 236 1 771 263 34 65 chr11 39285887 39286149 -109497323 - MIR SINE MIR -6 256 3 252 0 0 0 chr11 39286302 39286330 -109497142 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 369 0 0 0 chr11 39286329 39286370 -109497102 + (CA)n Simple_repeat Simple_repeat 1 41 0 971 242 4 45 chr11 39287165 39287429 -109496043 - MIR SINE MIR 0 262 10 186 209 0 0 chr11 39287858 39287901 -109495571 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 4842 223 54 27 chr11 39288025 39290171 -109493301 + L1MB8 LINE L1 3903 5990 -188 1894 147 70 3 chr11 39290171 39290512 -109492960 - L1MB3 LINE L1 0 6183 5820 3261 132 8 6 chr11 39290522 39291022 -109492450 - L1MB3 LINE L1 -4 6179 5679 4842 223 54 27 chr11 39291022 39291078 -109492394 + L1MB8 LINE L1 5998 6178 0 226 150 100 0 chr11 39291184 39291244 -109492228 + (TTAAG)n Simple_repeat Simple_repeat 3 68 0 428 176 158 12 chr11 39291326 39291491 -109491981 - HAL1b LINE L1 -222 1126 938 1632 196 62 62 chr11 39291952 39292417 -109491055 + LTR37B LTR ERV1 4 468 0 398 286 32 65 chr11 39292459 39292644 -109490828 - MER5A DNA MER1_type -5 184 6 319 222 0 25 chr11 39292877 39292958 -109490514 + MER116 DNA Mariner 2 80 0 243 84 141 99 chr11 39293455 39293526 -109489946 + LTR37A LTR ERV1 1 74 -352 1306 182 80 10 chr11 39293586 39293899 -109489573 + LTR37A LTR ERV1 92 426 0 232 241 126 11 chr11 39294540 39294627 -109488845 - MER112 DNA MER1_type -79 181 85 418 180 90 20 chr11 39294893 39294993 -109488479 - AluJo SINE Alu -176 136 30 7055 14 0 0 chr11 39295938 39296724 -109486748 - L1PA2 LINE L1 0 6155 5370 * 7311 26 6 0 chr11 39296720 39297574 -109485898 + L1PA2 LINE L1 4519 5377 -769 2298 90 0 37 chr11 39297789 39298111 -109485361 + AluY SINE Alu 1 310 -1 22 35 0 0 chr11 39298125 39298154 -109485318 + AT_rich Low_complexity Low_complexity 1 29 0 233 240 125 21 chr11 39299452 39299548 -109483924 + L1MC4 LINE L1 7922 8027 -15 271 306 61 0 chr11 39299678 39299776 -109483696 - L2 LINE L2 -24 3289 3186 2044 138 3 0 chr11 39300399 39300697 -109482775 - AluSx SINE Alu -13 299 1 2187 96 7 7 chr11 39301166 39301468 -109482004 + AluSx SINE Alu 2 303 -9 318 164 90 0 chr11 39301977 39302044 -109481428 - MIR3 SINE MIR -13 195 123 233 205 72 36 chr11 39302261 39302344 -109481128 - L1ME4a LINE L1 0 6121 6036 24 0 0 0 chr11 39305828 39305852 -109477620 + AT_rich Low_complexity Low_complexity 1 24 0 326 371 86 0 chr11 39306330 39306551 -109476921 + L2 LINE L2 2412 2651 -663 303 234 65 0 chr11 39307059 39307136 -109476336 + MER58B DNA MER1_type 216 297 -44 292 249 50 134 chr11 39307653 39307742 -109475730 - MIR3 SINE MIR -6 202 138 1006 232 72 0 chr11 39307742 39307949 -109475523 - MER58A DNA MER1_type 0 224 3 292 249 50 134 chr11 39307949 39308060 -109475412 - MIR3 SINE MIR -70 138 19 1873 161 3 30 chr11 39308437 39308741 -109474731 + AluJo SINE Alu 1 296 -16 29 28 0 0 chr11 39309168 39309204 -109474268 + AT_rich Low_complexity Low_complexity 1 36 0 2350 93 7 0 chr11 39309966 39310267 -109473205 + AluSp SINE Alu 1 303 -10 2519 72 0 7 chr11 39310651 39310956 -109472516 + AluSp SINE Alu 1 303 -10 2403 84 0 3 chr11 39312240 39312539 -109470933 - AluSg SINE Alu -12 298 1 236 232 179 11 chr11 39312708 39312803 -109470669 - L2 LINE L2 -3 3310 3200 580 70 0 0 chr11 39313893 39313964 -109469508 + Alu SINE Alu 222 292 -20 1008 262 119 36 chr11 39314363 39315095 -109468377 - L2 LINE L2 -1 3312 2518 184 323 108 15 chr11 39315398 39315463 -109468009 - MIR SINE MIR -119 89 19 23 0 0 0 chr11 39316092 39316115 -109467357 + AT_rich Low_complexity Low_complexity 1 23 0 217 250 26 53 chr11 39316464 39316540 -109466932 + MIR SINE MIR 68 141 -121 752 278 98 0 chr11 39317084 39317289 -109466183 + MIR SINE MIR 13 237 -25 485 300 47 43 chr11 39317238 39317471 -109466001 - MIR SINE MIR -17 245 12 * 1933 119 45 0 chr11 39317653 39317939 -109465533 - AluSx SINE Alu -13 299 1 15754 119 40 13 chr11 39318207 39320561 -109462911 - Tigger1 DNA MER2_type 0 2418 1 492 239 26 87 chr11 39320562 39320783 -109462689 - L1ME LINE L1 -449 5672 5466 313 300 0 11 chr11 39321424 39321514 -109461958 + L1MC4 LINE L1 6614 6702 -1340 737 173 22 0 chr11 39321534 39321767 -109461705 + (TA)n Simple_repeat Simple_repeat 1 238 0 324 244 11 33 chr11 39321771 39321861 -109461611 + L1MC4 LINE L1 6615 6702 -1340 632 200 23 0 chr11 39321881 39322056 -109461416 + (TA)n Simple_repeat Simple_repeat 2 180 0 1809 137 58 4 chr11 39322188 39322465 -109461007 - AluJb SINE Alu -20 292 1 24 32 0 0 chr11 39324693 39324724 -109458748 + GC_rich Low_complexity Low_complexity 1 31 0 830 222 36 63 chr11 39325277 39325491 -109457981 + MIR SINE MIR 8 215 -47 1906 174 0 7 chr11 39325491 39325801 -109457671 + AluJb SINE Alu 1 308 -4 830 222 36 63 chr11 39325801 39325838 -109457634 + MIR SINE MIR 215 252 -10 273 274 60 17 chr11 39326157 39326274 -109457198 + MIR SINE MIR 70 191 -71 311 319 18 0 chr11 39326438 39326551 -109456921 + MLT1J2 LTR MaLR 49 163 -287 346 301 39 8 chr11 39326595 39326775 -109456697 + MLT1I LTR MaLR 258 395 -14 507 125 0 0 chr11 39327074 39327154 -109456318 + MADE1 DNA Mariner 1 80 0 1949 194 12 30 chr11 39327227 39327628 -109455844 + MSTD LTR MaLR 3 396 0 1703 183 143 36 chr11 39327851 39327911 -109455561 + MLT1F LTR MaLR 46 98 -444 2342 113 33 33 chr11 39327911 39328275 -109455197 - THE1B LTR MaLR 0 364 1 1703 183 143 36 chr11 39328275 39328661 -109454811 + MLT1F LTR MaLR 98 540 -2 241 195 0 0 chr11 39328663 39328704 -109454768 - L2 LINE L2 -37 3276 3236 2981 122 4 9 chr11 39328704 39329162 -109454310 - MER1A DNA MER1_type 0 529 74 323 377 55 5 chr11 39329164 39329363 -109454109 - L2 LINE L2 -278 3035 2827 2316 43 0 4 chr11 39330629 39330943 -109452529 - AluY SINE Alu 0 313 1 459 235 83 8 chr11 39331055 39331187 -109452285 + LTR37B LTR ERV1 10 151 -317 7503 28 0 3 chr11 39332162 39333262 -109450210 - L1PA4 LINE L1 -3 6152 5057 403 293 94 9 chr11 39333829 39334041 -109449431 - L1ME LINE L1 -351 5770 5541 2110 102 3 35 chr11 39334586 39334899 -109448573 - AluSx SINE Alu -9 303 1 329 243 90 34 chr11 39335188 39335247 -109448225 - L1MC4 LINE L1 -146 7896 7842 2018 155 36 36 chr11 39335247 39335283 -109448189 + THE1B LTR MaLR 3 38 -326 2148 117 3 0 chr11 39335283 39335581 -109447891 - AluSp SINE Alu -14 299 1 2018 155 36 36 chr11 39335581 39335906 -109447566 + THE1B LTR MaLR 37 364 0 11970 90 2 1 chr11 39335906 39337484 -109445988 + THE1B-int LTR MaLR 1 1580 0 2284 123 22 25 chr11 39337484 39337849 -109445623 + THE1B LTR MaLR 1 364 0 329 243 90 34 chr11 39337849 39337964 -109445508 - L1MC4 LINE L1 -199 7843 7710 1738 199 133 77 chr11 39338068 39338812 -109444660 - L1MD1 LINE L1 -5 6631 5825 1576 200 0 13 chr11 39338812 39339112 -109444360 - AluJb SINE Alu -16 296 1 1738 199 133 77 chr11 39339112 39339286 -109444186 - L1MD1 LINE L1 -811 5825 5662 309 181 32 11 chr11 39339313 39339407 -109444065 + CT-rich Low_complexity Low_complexity 1 96 0 2182 228 44 37 chr11 39339424 39340266 -109443206 - L1MD1 LINE L1 -1194 5346 4499 421 254 100 0 chr11 39340296 39340426 -109443046 - L1MD1 LINE L1 -2275 4265 4123 * 8264 67 7 1 chr11 39340425 39342343 -109441129 - L1PA6 LINE L1 -20 6134 4203 * 11930 82 6 3 chr11 39342327 39344062 -109439410 + L1P LINE L1 2498 4237 -1909 4102 213 82 35 chr11 39344055 39346111 -109437361 - L1MD1 LINE L1 -2406 4134 1989 * 21 36 0 0 chr11 39346675 39346703 -109436769 + AT_rich Low_complexity Low_complexity 1 28 0 1168 218 103 39 chr11 39346847 39347282 -109436190 + MER44D DNA MER2_type 9 526 -79 2460 198 19 13 chr11 39347313 39347782 -109435690 + MER70A LTR ERVL 1 472 0 398 307 46 67 chr11 39347885 39348123 -109435349 - L1 LINE L1 -1938 4208 3976 27 0 0 0 chr11 39348151 39348178 -109435294 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 39348412 39348454 -109435018 + AT_rich Low_complexity Low_complexity 1 42 0 232 200 67 78 chr11 39348580 39348670 -109434802 - L2 LINE L2 -66 3247 3159 618 164 52 8 chr11 39348699 39348833 -109434639 + MLT1I LTR MaLR 19 158 -251 937 156 45 22 chr11 39348870 39349049 -109434423 - MLT1H LTR MaLR -366 183 1 326 337 99 40 chr11 39349062 39349457 -109434015 - L1 LINE L1 -3044 3102 2685 1959 115 0 4 chr11 39349807 39350068 -109433404 + AluSx SINE Alu 26 285 -27 218 31 0 31 chr11 39350071 39350103 -109433369 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 657 251 122 55 chr11 39350534 39350937 -109432535 + L1ME3A LINE L1 5727 6156 -14 47 61 0 0 chr11 39350993 39351075 -109432397 + AT_rich Low_complexity Low_complexity 1 82 0 2512 51 0 0 chr11 39351083 39351378 -109432094 - AluY SINE Alu -16 295 1 1203 146 19 108 chr11 39351483 39351806 -109431666 + L1MA10 LINE L1 6030 6323 -11 343 301 39 86 chr11 39351898 39352260 -109431212 - HAL1 LINE L1 -1048 1459 1115 1435 192 63 42 chr11 39353884 39354264 -109429208 + MLT1B LTR MaLR 3 390 0 1977 154 24 0 chr11 39354329 39354627 -109428845 - AluSx SINE Alu -7 305 1 2264 173 17 42 chr11 39354936 39355242 -109428230 + MER65C LTR ERV1 1 292 -169 2406 77 0 6 chr11 39355242 39355555 -109427917 - AluY SINE Alu 0 311 1 2264 173 17 42 chr11 39355555 39355721 -109427751 + MER65C LTR ERV1 292 461 0 296 268 12 65 chr11 39356203 39356371 -109427101 - MER113 DNA MER1_type? -34 487 329 380 252 22 7 chr11 39357056 39357195 -109426277 - MER113 DNA MER1_type? -355 166 26 613 154 8 0 chr11 39358665 39358782 -109424690 - L1MC/D LINE L1 -532 5710 5593 475 221 31 0 chr11 39358801 39358928 -109424544 - L1MC3 LINE L1 -25 7760 7630 233 65 0 0 chr11 39358928 39358959 -109424513 - L1MDa LINE L1 -4534 2006 1976 642 250 167 23 chr11 39358965 39359265 -109424207 + MLT1D LTR MaLR 8 350 -155 569 278 90 48 chr11 39359378 39359530 -109423942 - L1MC4a LINE L1 -1834 5974 5830 1752 128 103 34 chr11 39359530 39359881 -109423591 + THE1C LTR MaLR 1 375 0 569 278 90 48 chr11 39359881 39360084 -109423388 - L1MC4a LINE L1 -1978 5830 5604 1488 196 84 25 chr11 39360084 39360442 -109423030 + MLT1B LTR MaLR 5 383 -7 281 297 0 0 chr11 39360447 39360521 -109422951 - L1MC4a LINE L1 -2201 5607 5534 8317 107 34 2 chr11 39360620 39361970 -109421502 - L1PA7 LINE L1 -3167 2979 1587 17224 81 14 2 chr11 39361972 39365126 -109418346 + L1PA7 LINE L1 2983 6154 0 663 318 47 33 chr11 39365536 39365964 -109417508 - MLT1K LTR MaLR 0 588 155 1733 139 24 0 chr11 39366327 39366615 -109416857 - MLT1B LTR MaLR 0 390 96 41062 29 22 1 chr11 39366619 39372643 -109410829 - L1HS LINE L1 -2 6153 2 601 100 55 36 chr11 39372643 39372753 -109410719 - MLT1B LTR MaLR -278 112 1 5607 207 42 21 chr11 39373021 39375235 -109408237 - L1 LINE L1 -3172 4036 1708 1561 251 27 68 chr11 39375359 39375992 -109407480 - L1 LINE L1 -6587 622 16 921 248 84 36 chr11 39376465 39376905 -109406567 + MLT2B1 LTR ERVL 13 520 0 587 234 184 45 chr11 39376928 39377172 -109406300 - L2 LINE L2 -345 2969 2692 452 291 74 0 chr11 39377172 39377320 -109406152 - L2 LINE L2 -801 2513 2355 545 321 38 10 chr11 39377344 39377553 -109405919 - MIR SINE MIR -44 218 4 446 211 9 9 chr11 39377708 39377817 -109405655 - MLT1B LTR MaLR 0 390 282 552 186 0 0 chr11 39377824 39377921 -109405551 + MLT2B2 LTR ERVL 350 446 -69 745 168 0 105 chr11 39377921 39378130 -109405342 - MLT1B LTR MaLR -112 278 92 1810 171 20 9 chr11 39378132 39378543 -109404929 + MLT2B1 LTR ERVL 1 462 -53 21 36 0 0 chr11 39378636 39378664 -109404808 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 39378702 39378737 -109404735 + AT_rich Low_complexity Low_complexity 1 35 0 385 351 53 18 chr11 39379930 39380101 -109403371 + MIR3 SINE MIR 16 192 -16 195 42 0 0 chr11 39381088 39381112 -109402360 + (GA)n Simple_repeat Simple_repeat 2 25 0 485 298 190 0 chr11 39382132 39382337 -109401135 + MIR SINE MIR 4 247 -15 181 321 214 0 chr11 39382344 39382456 -109401016 - MIR SINE MIR -105 157 22 388 316 53 38 chr11 39382588 39382797 -109400675 - MIR SINE MIR -10 252 41 221 272 185 56 chr11 39383573 39383735 -109399737 + MER5A DNA MER1_type 1 183 -6 358 318 56 49 chr11 39384687 39384954 -109398518 - L1ME4a LINE L1 -14 6107 5839 429 289 43 65 chr11 39385005 39385375 -109398097 - L1ME4a LINE L1 -312 5809 5448 2908 129 4 2 chr11 39385469 39386068 -109397404 - L1M1 LINE L1 -591 5714 5114 1995 142 0 10 chr11 39386626 39386921 -109396551 - AluSx SINE Alu -17 295 4 256 302 155 17 chr11 39387936 39388052 -109395420 - L2 LINE L2 -3 3310 3179 24 53 0 0 chr11 39388201 39388239 -109395233 + AT_rich Low_complexity Low_complexity 1 38 0 196 309 85 32 chr11 39392517 39392611 -109390861 - L2 LINE L2 -2111 1203 1105 366 312 143 13 chr11 39392628 39392782 -109390690 - MIR SINE MIR -69 193 20 22 56 0 0 chr11 39394776 39394812 -109388660 + AT_rich Low_complexity Low_complexity 1 36 0 2541 70 0 3 chr11 39395069 39395381 -109388091 - AluY SINE Alu 0 311 1 2125 198 42 2 chr11 39395381 39395791 -109387681 - MSTB LTR MaLR 0 426 1 8787 169 28 14 chr11 39395791 39397419 -109386053 - MSTB-int LTR MaLR 0 1651 1 1209 189 14 5 chr11 39397419 39397771 -109385701 - MSTB LTR MaLR 0 428 1 228 246 174 0 chr11 39397802 39397871 -109385601 - MIR SINE MIR -105 103 23 315 294 96 22 chr11 39397878 39398014 -109385458 - MIR SINE MIR 0 262 117 425 297 72 63 chr11 39398443 39398887 -109384585 - L2 LINE L2 -8 3305 2858 421 350 91 52 chr11 39400594 39401200 -109382272 - L2 LINE L2 -4 3268 2565 1937 153 51 20 chr11 39401213 39401566 -109381906 - THE1B LTR MaLR 0 364 1 811 276 62 58 chr11 39401671 39402105 -109381367 + MLT1J2 LTR MaLR 1 436 -14 180 0 0 0 chr11 39402212 39402232 -109381240 + (TC)n Simple_repeat Simple_repeat 2 21 0 306 125 0 0 chr11 39402232 39402280 -109381192 + (TG)n Simple_repeat Simple_repeat 2 49 0 206 340 20 50 chr11 39402292 39402392 -109381080 - L2 LINE L2 -16 3297 3201 206 370 102 24 chr11 39402531 39402658 -109380814 - L2 LINE L2 0 3272 3136 1475 223 3 13 chr11 39402859 39403169 -109380303 + AluJo SINE Alu 6 312 0 274 255 41 165 chr11 39404148 39404415 -109379057 - L2 LINE L2 -219 3053 2820 285 359 57 6 chr11 39404962 39405121 -109378351 + L2 LINE L2 2813 2979 -293 778 322 56 32 chr11 39405124 39405556 -109377916 + MARNA DNA Mariner 53 494 -92 267 31 0 0 chr11 39405694 39405726 -109377746 + (CA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 39406086 39406113 -109377359 + AT_rich Low_complexity Low_complexity 1 27 0 282 29 0 0 chr11 39406602 39406637 -109376835 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 208 0 0 chr11 39406991 39407039 -109376433 + (TA)n Simple_repeat Simple_repeat 1 48 0 1023 198 47 22 chr11 39410527 39410759 -109372713 + MIR SINE MIR 2 239 -23 515 217 35 0 chr11 39411008 39411123 -109372349 + MIR SINE MIR 138 256 -6 201 39 0 0 chr11 39411215 39411241 -109372231 + (T)n Simple_repeat Simple_repeat 1 26 0 485 271 8 131 chr11 39413693 39413937 -109369535 + MIR SINE MIR 1 214 -48 2322 109 0 0 chr11 39413993 39414297 -109369175 - AluSx SINE Alu -8 304 1 289 220 275 0 chr11 39414440 39414549 -109368923 + MIR SINE MIR 98 236 -26 248 250 171 0 chr11 39415199 39415275 -109368197 - L2 LINE L2 -17 3296 3208 2023 165 3 9 chr11 39415278 39415617 -109367855 + MER1B DNA MER1_type 1 337 0 1529 212 10 6 chr11 39416643 39416954 -109366518 - AluJb SINE Alu 0 312 1 252 325 0 8 chr11 39418487 39418607 -109364865 - L1MD2 LINE L1 -37 6320 6087 2197 128 0 0 chr11 39418643 39418941 -109364531 + AluSq SINE Alu 1 298 -15 201 264 19 0 chr11 39419830 39419883 -109363589 + L3 LINE CR1 1521 1574 -3 1841 85 4 16 chr11 39421180 39421426 -109362046 + AluSq SINE Alu 1 243 -70 198 0 0 0 chr11 39421444 39421466 -109362006 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 490 184 27 116 chr11 39422287 39422326 -109361146 - MIR SINE MIR -69 193 152 1212 230 33 12 chr11 39422326 39422656 -109360816 - MER46C DNA MER2_type -1 337 1 490 184 27 116 chr11 39422656 39422674 -109360798 - MIR SINE MIR -110 152 134 2041 113 4 0 chr11 39422674 39422948 -109360524 - AluSp SINE Alu -11 302 28 490 184 27 116 chr11 39422948 39423036 -109360436 - MIR SINE MIR -128 134 60 7042 59 2 1 chr11 39423399 39424353 -109359119 + L1PA5 LINE L1 3235 4189 -1957 1393 50 0 0 chr11 39424351 39424549 -109358923 - L1P LINE L1 -2710 3436 3239 * 9554 45 1 0 chr11 39424558 39426504 -109356968 + L1PA5 LINE L1 4205 6151 -3 21 0 0 0 chr11 39426494 39426515 -109356957 + AT_rich Low_complexity Low_complexity 1 21 0 * 1589 236 108 51 chr11 39426511 39427109 -109356363 + LTR9B LTR ERV1 13 644 0 210 246 29 29 chr11 39427325 39427394 -109356078 - L2 LINE L2 -543 2771 2703 664 259 148 7 chr11 39427494 39427799 -109355673 - HAL1 LINE L1 -1044 1463 1116 2132 113 23 0 chr11 39428484 39428785 -109354687 - AluSg SINE Alu -2 308 1 230 380 31 12 chr11 39429030 39429193 -109354279 + L2 LINE L2 2918 3083 -189 2363 86 3 3 chr11 39429782 39430086 -109353386 - AluSx SINE Alu -8 304 1 681 24 0 0 chr11 39430204 39430287 -109353185 - L1PA5 LINE L1 -2 6152 6070 852 287 104 23 chr11 39432390 39432994 -109350478 - L2 LINE L2 -222 3091 2444 369 218 15 105 chr11 39433390 39433523 -109349949 + MER5C DNA MER1_type 1 121 -203 469 149 9 47 chr11 39433547 39433654 -109349818 + MER5C DNA MER1_type 222 324 0 2225 26 7 0 chr11 39433768 39434037 -109349435 - L1PA3 LINE L1 0 6155 5885 338 323 11 0 chr11 39434281 39434374 -109349098 - MIR3 SINE MIR -3 205 112 409 341 18 6 chr11 39435053 39435217 -109348255 + L3 LINE CR1 1050 1215 -362 295 354 47 24 chr11 39435279 39435406 -109348066 - L2 LINE L2 -16 3256 3127 621 308 90 11 chr11 39435574 39435840 -109347632 + L3 LINE CR1 1215 1501 -76 229 306 111 0 chr11 39435877 39435949 -109347523 + MIR SINE MIR 13 92 -170 185 293 0 0 chr11 39435983 39436024 -109347448 + L2 LINE L2 3254 3294 -19 189 328 15 15 chr11 39436038 39436105 -109347367 + L3 LINE CR1 1509 1575 -2 233 362 53 0 chr11 39436765 39436859 -109346613 - MIR3 SINE MIR -7 201 103 548 318 123 0 chr11 39436901 39437112 -109346360 + MIR SINE MIR 23 259 -3 218 81 27 0 chr11 39437117 39437154 -109346318 + (CTG)n Simple_repeat Simple_repeat 1 38 0 323 228 141 109 chr11 39437226 39437502 -109345970 + Charlie8 DNA MER1_type 35 1417 -1000 422 252 126 38 chr11 39437592 39437751 -109345721 + MER5B DNA MER1_type 1 173 -5 409 333 58 62 chr11 39439709 39439985 -109343487 - L2 LINE L2 0 3272 2998 10222 24 3 0 chr11 39440229 39442208 -109341264 - L1PA2 LINE L1 0 6155 4173 716 171 0 0 chr11 39443060 39443183 -109340289 + MER3 DNA MER1_type 48 123 -86 1439 163 29 3 chr11 39443190 39443503 -109339969 + MER3 DNA MER1_type 2234 2554 0 309 162 0 0 chr11 39443503 39443571 -109339901 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 185 224 0 105 chr11 39443628 39443704 -109339768 + MER5B DNA MER1_type 2 69 -109 308 289 41 10 chr11 39443761 39443858 -109339614 + MER5A DNA MER1_type 90 189 0 339 295 36 9 chr11 39444038 39444150 -109339322 - MIR SINE MIR -67 195 81 401 250 18 122 chr11 39444264 39444428 -109339044 - MIR SINE MIR -21 241 95 993 130 62 6 chr11 39444428 39444590 -109338882 + MLT1B LTR MaLR 1 171 -219 303 244 76 76 chr11 39444759 39444890 -109338582 + L2 LINE L2 3180 3310 -3 257 220 0 0 chr11 39445357 39445407 -109338065 - MIR SINE MIR -77 131 82 22 70 0 0 chr11 39447210 39447253 -109336219 + AT_rich Low_complexity Low_complexity 1 43 0 295 286 48 12 chr11 39448001 39448085 -109335387 - L2 LINE L2 -31 3241 3155 250 274 155 60 chr11 39448830 39448998 -109334474 + MIR SINE MIR 31 214 -48 269 326 51 51 chr11 39449407 39449545 -109333927 - MER5A DNA MER1_type -12 177 40 225 154 0 0 chr11 39450278 39450317 -109333155 + (TA)n Simple_repeat Simple_repeat 1 39 0 223 167 0 0 chr11 39450508 39450550 -109332922 + (CA)n Simple_repeat Simple_repeat 1 42 0 942 290 121 19 chr11 39450567 39450988 -109332484 + MLT1J LTR MaLR 45 508 -3 837 248 64 41 chr11 39450988 39451282 -109332190 + MLT1J LTR MaLR 209 509 -2 717 270 53 0 chr11 39451375 39451564 -109331908 + MIR SINE MIR 12 210 -52 21 36 0 0 chr11 39451566 39451594 -109331878 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 39451648 39451670 -109331802 + AT_rich Low_complexity Low_complexity 1 22 0 545 260 77 24 chr11 39451740 39451948 -109331524 - L1ME4a LINE L1 -228 5893 5675 575 247 145 44 chr11 39451948 39452396 -109331076 - L2 LINE L2 -25 3288 2771 245 380 20 10 chr11 39452680 39452780 -109330692 + L2 LINE L2 3149 3249 -23 1963 211 37 5 chr11 39453234 39453670 -109329802 + L1MB7 LINE L1 5724 6173 -11 350 323 17 83 chr11 39454596 39454896 -109328576 + L2 LINE L2 2919 3198 -74 846 269 9 14 chr11 39458333 39458549 -109324923 + MIR SINE MIR 9 223 -39 29 28 0 0 chr11 39458570 39458606 -109324866 + AT_rich Low_complexity Low_complexity 1 36 0 304 356 40 27 chr11 39458606 39458828 -109324644 + L2 LINE L2 2194 2418 -896 306 251 228 6 chr11 39458886 39459053 -109324419 + L1ME LINE L1 5650 5853 -268 301 203 0 17 chr11 39459341 39459400 -109324072 + L2 LINE L2 3250 3307 -6 202 363 106 9 chr11 39460763 39460876 -109322596 - MIR SINE MIR -63 145 22 22 35 0 0 chr11 39463116 39463145 -109320327 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 39463341 39463362 -109320110 + AT_rich Low_complexity Low_complexity 1 21 0 434 311 0 46 chr11 39463968 39464119 -109319353 - MER5A DNA MER1_type -38 151 8 1941 124 0 60 chr11 39464303 39464617 -109318855 - AluSx SINE Alu -17 295 1 1805 154 114 40 chr11 39465845 39466247 -109317225 - MSTB1 LTR MaLR 0 432 1 317 290 0 0 chr11 39466447 39466540 -109316932 - L1ME LINE L1 -5947 123 31 5466 178 69 21 chr11 39466604 39467843 -109315629 + Charlie1 DNA MER1_type 1424 2722 -39 4848 43 0 0 chr11 39467894 39468505 -109314967 - L1P LINE L1 -3199 2947 2337 16366 69 1 1 chr11 39468505 39471483 -109311989 + L1PA5 LINE L1 3221 6161 0 200 344 16 16 chr11 39472383 39472447 -109311025 - L2 LINE L2 -14 3299 3236 330 267 216 11 chr11 39473108 39473284 -109310188 + MIR SINE MIR 3 214 -48 576 306 57 42 chr11 39474967 39475350 -109308122 - MLT1J2 LTR MaLR 0 450 62 1212 148 88 0 chr11 39476344 39476561 -109306911 + MER46A DNA MER2_type 1 236 0 10558 103 34 3 chr11 39476840 39479282 -109304190 - L1PA5 LINE L1 0 6300 3819 304 250 0 0 chr11 39480202 39480262 -109303210 + L2 LINE L2 3208 3267 -5 225 315 146 66 chr11 39480337 39480699 -109302773 + L2 LINE L2 1633 2023 -1291 243 114 0 0 chr11 39480721 39480765 -109302707 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 645 27 0 0 chr11 39480765 39480838 -109302634 - L1PA5 LINE L1 -24 6130 6058 188 333 0 17 chr11 39481015 39481075 -109302397 + L2 LINE L2 2234 2292 -1022 239 222 212 20 chr11 39481349 39481448 -109302024 + L2 LINE L2 3196 3313 0 508 347 97 56 chr11 39481545 39481957 -109301515 + L2 LINE L2 2841 3269 -3 29 0 0 0 chr11 39482192 39482221 -109301251 + AT_rich Low_complexity Low_complexity 1 29 0 2062 140 0 0 chr11 39482689 39482981 -109300491 + AluSx SINE Alu 1 292 -20 386 272 147 7 chr11 39484016 39484152 -109299320 + MIR SINE MIR 32 186 -76 549 201 45 15 chr11 39486435 39486569 -109296903 - L1MC1 LINE L1 -1 6332 6195 198 0 0 0 chr11 39486608 39486630 -109296842 + (TG)n Simple_repeat Simple_repeat 1 22 0 2999 107 38 2 chr11 39486630 39487069 -109296403 - L1MB1 LINE L1 -8 6160 5703 232 289 13 0 chr11 39487073 39487149 -109296323 + (TG)n Simple_repeat Simple_repeat 2 78 0 302 311 185 30 chr11 39487233 39487368 -109296104 - L2 LINE L2 -1 3271 3116 315 191 109 64 chr11 39487369 39487479 -109295993 + MER3 DNA MER1_type 48 162 -47 758 174 0 0 chr11 39487488 39487620 -109295852 + MER3 DNA MER1_type 2234 2365 0 * 1926 172 88 30 chr11 39487617 39487653 -109295819 - MLT2A2 LTR ERVL 0 554 522 468 51 0 0 chr11 39487653 39487712 -109295760 + (TA)n Simple_repeat Simple_repeat 2 60 0 1926 172 88 30 chr11 39487712 39488190 -109295282 - MLT2A2 LTR ERVL -32 522 1 854 183 102 24 chr11 39488192 39488438 -109295034 + MER3 DNA MER1_type 2359 2623 0 263 342 94 23 chr11 39488523 39488995 -109294477 - L2 LINE L2 -212 3060 2554 1608 156 38 35 chr11 39489175 39489464 -109294008 - AluJo SINE Alu -22 290 1 1562 170 0 4 chr11 39490329 39490576 -109292896 - AluJo SINE Alu -64 248 3 632 318 171 27 chr11 39490944 39491388 -109292084 + L2 LINE L2 2805 3312 -1 1915 225 86 48 chr11 39491748 39492366 -109291106 + LTR9B LTR ERV1 4 644 0 405 121 17 0 chr11 39492411 39492469 -109291003 + HUERS-P3b LTR ERV1 38 96 -7322 667 217 76 19 chr11 39492472 39492629 -109290843 + HUERS-P3b LTR ERV1 409 574 -6844 * 6680 155 22 32 chr11 39492624 39493767 -109289705 + HUERS-P3b LTR ERV1 747 1877 -5541 3467 72 88 22 chr11 39493766 39493938 -109289534 + HUERS-P3b LTR ERV1 2111 2270 -5148 * 2331 100 0 0 chr11 39493938 39494237 -109289235 + AluSg SINE Alu 1 299 -11 3467 72 88 22 chr11 39494237 39494563 -109288909 + HUERS-P3b LTR ERV1 2270 2642 -4776 2259 196 45 2 chr11 39494563 39494986 -109288486 - LTR8 LTR ERV1 -250 441 1 7895 159 56 52 chr11 39494986 39495969 -109287503 + HUERS-P3 LTR ERV1 1008 1985 -5433 2105 106 14 0 chr11 39495969 39496253 -109287219 + AluSx SINE Alu 1 288 -24 7895 159 56 52 chr11 39496253 39497214 -109286258 + HUERS-P3 LTR ERV1 1985 2940 -4478 2367 100 0 0 chr11 39497214 39497514 -109285958 - AluY SINE Alu -11 300 1 7895 159 56 52 chr11 39497514 39498724 -109284748 + HUERS-P3 LTR ERV1 2940 4143 -3275 2170 87 3 7 chr11 39498724 39499035 -109284437 - AluSp SINE Alu 0 310 1 7895 159 56 52 chr11 39499035 39499199 -109284273 + HUERS-P3 LTR ERV1 4143 6945 -473 1353 197 4 16 chr11 39499469 39499761 -109283711 + HUERS-P3 LTR ERV1 7163 8919 0 23892 90 8 9 chr11 39499792 39502760 -109280712 + L1P LINE L1 5 2971 -3175 2929 12 0 3 chr11 39502760 39503079 -109280393 - AluYb8 SINE Alu 0 318 1 23892 90 8 9 chr11 39503079 39503371 -109280101 + L1P LINE L1 2971 3262 -2884 283 358 108 0 chr11 39504078 39504254 -109279218 + MIR SINE MIR 34 228 -34 397 198 72 63 chr11 39504491 39504602 -109278870 - MER103 DNA DNA -41 125 14 195 204 0 0 chr11 39504605 39504649 -109278823 + CT-rich Low_complexity Low_complexity 4 47 0 436 217 252 0 chr11 39504886 39505001 -109278471 - MER5A DNA MER1_type -6 183 40 367 246 183 48 chr11 39504989 39505115 -109278357 + MER5A DNA MER1_type 47 189 0 * 806 180 197 11 chr11 39505122 39505305 -109278167 - MER20 DNA MER1_type 0 219 3 612 250 70 0 chr11 39505504 39505660 -109277812 - MIR SINE MIR -21 241 75 240 250 0 28 chr11 39506337 39506409 -109277063 + L3 LINE CR1 792 861 -716 911 296 0 9 chr11 39506478 39506711 -109276761 - MIR SINE MIR -19 243 13 1349 186 73 36 chr11 39507989 39508290 -109275182 - AluJo SINE Alu 0 312 1 441 313 27 12 chr11 39508434 39508601 -109274871 - MIR SINE MIR -42 166 2 550 93 0 0 chr11 39508686 39508761 -109274711 - MADE1 DNA Mariner -5 75 1 2121 143 14 172 chr11 39508916 39509382 -109274090 + LTR32 LTR ERVL 1 367 -104 2285 56 0 24 chr11 39509382 39509709 -109273763 + AluY SINE Alu 1 320 0 2121 143 14 172 chr11 39509709 39509800 -109273672 + LTR32 LTR ERVL 367 471 0 3413 181 25 32 chr11 39510488 39511179 -109272293 - MER67C LTR ERV1 -24 686 1 1124 223 103 107 chr11 39511978 39512569 -109270903 + LTR49 LTR ERV1 5 593 -2 3192 38 8 5 chr11 39513113 39513483 -109269989 - L1PA8 LINE L1 0 6172 5802 515 57 14 0 chr11 39513483 39513553 -109269919 + L1PA8 LINE L1 5728 5798 -374 2031 89 0 4 chr11 39513554 39513823 -109269649 - AluY SINE Alu -1 310 43 452 293 102 18 chr11 39516541 39516762 -109266710 - MIR SINE MIR -23 239 4 224 343 48 0 chr11 39516873 39516978 -109266494 + L2 LINE L2 3180 3289 -24 1049 229 5 0 chr11 39518544 39518732 -109264740 - MER5A DNA MER1_type 0 189 1 351 263 172 0 chr11 39518937 39519091 -109264381 + MIR SINE MIR 21 200 -62 353 261 11 23 chr11 39519771 39519859 -109263613 + MIR3 SINE MIR 81 167 -41 180 0 0 0 chr11 39520691 39520711 -109262761 + (T)n Simple_repeat Simple_repeat 1 20 0 219 114 0 0 chr11 39521191 39521226 -109262246 + (GA)n Simple_repeat Simple_repeat 2 36 0 210 37 0 0 chr11 39522643 39522670 -109260802 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 299 312 116 98 chr11 39522672 39523111 -109260361 - L2 LINE L2 -14 3258 2812 2180 116 0 0 chr11 39523223 39523515 -109259957 + AluSg SINE Alu 1 292 -18 231 319 69 0 chr11 39523929 39524001 -109259471 - L2 LINE L2 -54 3218 3142 241 322 61 9 chr11 39524109 39524224 -109259248 - L2 LINE L2 -571 2743 2623 2060 135 0 13 chr11 39524764 39525067 -109258405 + AluSx SINE Alu 5 303 -9 558 242 230 17 chr11 39525088 39525266 -109258206 - MIR SINE MIR -41 221 6 2191 164 63 0 chr11 39526617 39526984 -109256488 + MLT1B LTR MaLR 1 390 0 350 222 11 22 chr11 39527818 39527908 -109255564 + MER117 DNA MER1_type 2 90 -107 2387 72 7 3 chr11 39528043 39528336 -109255136 + AluY SINE Alu 1 294 -17 872 100 23 8 chr11 39528336 39528460 -109255012 - L1PB2 LINE L1 -6 6145 6020 228 321 143 0 chr11 39528556 39528640 -109254832 + Charlie8 DNA MER1_type 121 216 -2201 279 356 60 42 chr11 39529106 39529553 -109253919 + L2 LINE L2 2250 2777 -537 2232 96 10 3 chr11 39530043 39530346 -109253126 - AluSg SINE Alu -5 305 1 958 189 74 0 chr11 39530447 39530637 -109252835 - MER3 DNA MER1_type -1 208 5 183 80 0 0 chr11 39531307 39531332 -109252140 + (TAA)n Simple_repeat Simple_repeat 3 27 0 217 305 32 21 chr11 39531332 39531427 -109252045 - MIR SINE MIR -8 254 159 336 256 120 0 chr11 39531481 39531614 -109251858 + MIR SINE MIR 114 262 0 2351 93 0 7 chr11 39531622 39531924 -109251548 - AluSp SINE Alu -13 300 1 213 315 8 92 chr11 39531924 39532054 -109251418 - MIR SINE MIR -111 151 33 224 356 102 8 chr11 39532457 39532575 -109250897 - L2 LINE L2 -2 3270 3142 223 323 138 24 chr11 39532855 39533022 -109250450 - L2 LINE L2 -527 2787 2602 240 298 18 0 chr11 39533133 39533190 -109250282 - L2 LINE L2 -21 3292 3235 494 285 149 42 chr11 39534564 39534852 -109248620 + MLT1J2 LTR MaLR 57 375 -75 1022 215 132 87 chr11 39534860 39535284 -109248188 - LTR50 LTR ERVL -352 443 1 319 138 77 31 chr11 39535284 39535345 -109248127 + MLT1J2 LTR MaLR 366 429 -21 1652 164 64 0 chr11 39535723 39536004 -109247468 - AluJo SINE Alu -13 299 1 533 203 61 108 chr11 39536032 39536244 -109247228 - L1MC3 LINE L1 -829 6956 6755 1234 253 98 35 chr11 39536304 39536755 -109246717 + L2 LINE L2 2827 3305 -8 333 335 61 31 chr11 39536809 39537165 -109246307 + L2 LINE L2 2692 3071 -201 1310 218 47 66 chr11 39537251 39537632 -109245840 - MLT1A2 LTR MaLR 0 374 1 210 291 239 8 chr11 39539051 39539168 -109244304 + MIR SINE MIR 119 262 0 580 310 22 5 chr11 39539357 39539541 -109243931 - MER5A DNA MER1_type -1 188 2 607 316 63 26 chr11 39539593 39540161 -109243311 - MLT2E LTR ERVL 0 628 1 283 176 29 73 chr11 39540612 39540636 -109242836 + MLT1D LTR MaLR 1 25 -480 2165 148 13 48 chr11 39540636 39541013 -109242459 - THE1B LTR MaLR 0 364 1 283 176 29 73 chr11 39541013 39541056 -109242416 + MLT1D LTR MaLR 25 65 -440 28 0 0 0 chr11 39541071 39541099 -109242373 + AT_rich Low_complexity Low_complexity 1 28 0 857 199 28 25 chr11 39541103 39541459 -109242013 + MLT1D LTR MaLR 61 502 -3 387 0 0 0 chr11 39541470 39541513 -109241959 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2331 133 42 31 chr11 39542079 39542463 -109241009 - MLT1B LTR MaLR 0 390 3 615 249 127 21 chr11 39542929 39543166 -109240306 + MLT1G LTR MaLR 15 276 -314 402 267 8 17 chr11 39543174 39543294 -109240178 + MLT1G LTR MaLR 437 555 0 559 330 106 4 chr11 39543828 39544064 -109239408 + MIR SINE MIR 2 261 -1 290 356 96 0 chr11 39544123 39544227 -109239245 + L2 LINE L2 3199 3312 -1 365 314 19 0 chr11 39544855 39544960 -109238512 - MIR SINE MIR -2 260 154 974 222 11 0 chr11 39545192 39545372 -109238100 + MER5A DNA MER1_type 3 184 -5 971 146 48 0 chr11 39545596 39545761 -109237711 + L1PBa LINE L1 28 200 -6663 10487 153 38 32 chr11 39545761 39548156 -109235316 + L1PBa LINE L1 634 3013 -3849 2100 125 26 3 chr11 39548156 39548461 -109235011 + AluSx SINE Alu 1 312 0 10487 153 38 32 chr11 39548461 39548697 -109234775 + L1PBa LINE L1 3013 3246 -3616 733 118 0 0 chr11 39548697 39548790 -109234682 + AluS SINE Alu 3 95 -217 1950 138 31 0 chr11 39548790 39549079 -109234393 + AluSx SINE Alu 1 298 -14 10487 153 38 32 chr11 39549079 39550641 -109232831 + L1PBa LINE L1 3245 5132 -1730 505 358 19 5 chr11 39550673 39550880 -109232592 + L2 LINE L2 2678 2887 -427 6649 185 39 17 chr11 39550896 39552580 -109230892 - L1M1 LINE L1 -4065 1263 10 323 320 53 27 chr11 39552588 39552738 -109230734 + L2 LINE L2 2896 3049 -223 768 236 136 48 chr11 39552763 39553094 -109230378 - MLT1G LTR MaLR -215 375 16 186 296 61 82 chr11 39553164 39553262 -109230210 + L2 LINE L2 3176 3271 -1 329 273 73 36 chr11 39553333 39553443 -109230029 + L2 LINE L2 3200 3313 0 330 342 58 89 chr11 39554098 39554342 -109229130 + L2 LINE L2 2246 2496 -818 462 292 7 0 chr11 39554342 39554479 -109228993 - MIR SINE MIR -2 260 123 330 342 58 89 chr11 39554479 39554806 -109228666 + L2 LINE L2 2496 2931 -383 791 256 49 34 chr11 39554810 39555076 -109228396 - L2 LINE L2 0 3313 3044 966 262 72 23 chr11 39555080 39555385 -109228087 - L2 LINE L2 -372 2942 2623 492 163 0 0 chr11 39556026 39556112 -109227360 - L1MA4 LINE L1 -2 6298 6213 554 167 10 0 chr11 39556112 39556208 -109227264 + L1MA4 LINE L1 5795 5891 -409 561 183 58 0 chr11 39556771 39556891 -109226581 + Charlie5 DNA MER1_type 1 127 -2485 * 1591 176 52 29 chr11 39556889 39557270 -109226202 + Charlie5 DNA MER1_type 2235 2624 0 1986 180 118 9 chr11 39557997 39558448 -109225024 + Charlie1b DNA MER1_type 1 500 -23 445 254 58 29 chr11 39558573 39558711 -109224761 - MER5A DNA MER1_type 0 189 48 415 314 41 37 chr11 39559742 39560013 -109223459 + MLT1K LTR MaLR 275 546 -42 2071 65 24 21 chr11 39560047 39560338 -109223134 - AluSx SINE Alu -20 292 1 477 244 191 12 chr11 39561115 39561157 -109222315 + MER3 DNA MER1_type 1 34 -175 2292 93 3 3 chr11 39561157 39561458 -109222014 - AluSg SINE Alu -9 301 1 477 244 191 12 chr11 39561458 39561583 -109221889 + MER3 DNA MER1_type 34 198 -11 194 365 82 12 chr11 39561698 39561783 -109221689 + MIR SINE MIR 24 114 -94 379 264 49 49 chr11 39562853 39562997 -109220475 + MER117 DNA MER1_type 1 144 -53 345 246 85 51 chr11 39563002 39563120 -109220352 + L2 LINE L2 3190 3311 -2 673 255 132 17 chr11 39563540 39563775 -109219697 - MIR SINE MIR 0 262 1 270 252 73 57 chr11 39564194 39564317 -109219155 - L3b LINE CR1 -140 1443 1319 333 196 0 0 chr11 39564460 39564516 -109218956 - MLT1E2 LTR MaLR 0 626 571 1452 184 54 0 chr11 39564520 39564781 -109218691 + AluJo SINE Alu 1 275 -37 506 305 6 18 chr11 39564895 39565059 -109218413 + MIR SINE MIR 3 164 -98 375 311 51 25 chr11 39565403 39565599 -109217873 - MLT1K LTR MaLR -379 209 9 269 341 96 18 chr11 39566146 39566313 -109217159 - MIR SINE MIR -81 181 2 22 0 0 0 chr11 39567227 39567249 -109216223 + AT_rich Low_complexity Low_complexity 1 22 0 2274 127 0 0 chr11 39567784 39568092 -109215380 - AluSx SINE Alu -2 310 3 917 178 18 18 chr11 39568984 39569153 -109214319 + MER58B DNA MER1_type 173 341 0 270 317 148 47 chr11 39569153 39569491 -109213981 - L2 LINE L2 -52 3220 2849 2248 117 0 0 chr11 39569688 39569987 -109213485 + AluSq SINE Alu 1 299 -14 2026 165 209 0 chr11 39570103 39570533 -109212939 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr11 39570670 39570692 -109212780 + AT_rich Low_complexity Low_complexity 1 22 0 199 283 0 17 chr11 39570719 39570779 -109212693 + L2 LINE L2 3214 3272 0 1785 197 44 87 chr11 39571544 39571591 -109211881 - MLT2B3 LTR ERVL -4 550 502 1051 188 181 56 chr11 39571591 39571895 -109211577 - MER2 DNA MER2_type -2 342 1 1785 197 44 87 chr11 39571895 39572420 -109211052 - MLT2B3 LTR ERVL -52 502 3 229 139 0 0 chr11 39573104 39573140 -109210332 - MIR SINE MIR -109 153 118 25 31 0 0 chr11 39573657 39573689 -109209783 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 39573823 39573845 -109209627 + AT_rich Low_complexity Low_complexity 1 22 0 2093 142 3 0 chr11 39573878 39574187 -109209285 + AluSx SINE Alu 1 310 -2 199 378 39 19 chr11 39574321 39574477 -109208995 + MIR SINE MIR 2 160 -102 25 53 0 18 chr11 39574512 39574550 -109208922 + AT_rich Low_complexity Low_complexity 1 39 -17 1004 58 0 0 chr11 39574550 39574670 -109208802 - L1MA1 LINE L1 -7 6295 6176 25 53 0 18 chr11 39574670 39574688 -109208784 + AT_rich Low_complexity Low_complexity 39 56 0 21 57 0 0 chr11 39574771 39574806 -109208666 + AT_rich Low_complexity Low_complexity 1 35 0 439 175 232 43 chr11 39574840 39575051 -109208421 - L1ME4a LINE L1 -67 6054 5804 1742 267 103 32 chr11 39576148 39576702 -109206770 + MLT1E LTR MaLR 1 593 0 2333 50 0 0 chr11 39577879 39578200 -109205272 - AluY SINE Alu 0 322 2 407 253 164 20 chr11 39578393 39578539 -109204933 + LTR67 LTR ERVL 383 549 -8 285 333 9 9 chr11 39580176 39580287 -109203185 - MIR3 SINE MIR -7 201 91 252 264 0 14 chr11 39580456 39580528 -109202944 + CT-rich Low_complexity Low_complexity 2 72 0 942 214 27 41 chr11 39580562 39580782 -109202690 + MER20 DNA MER1_type 3 219 0 1055 284 145 20 chr11 39582115 39582570 -109200902 - LTR33 LTR ERVL -9 512 1 592 289 54 25 chr11 39582594 39582798 -109200674 + MIR SINE MIR 46 255 -7 831 274 29 22 chr11 39583360 39583637 -109199835 + LTR16A LTR ERVL 172 450 0 21 36 0 0 chr11 39586571 39586599 -109196873 + AT_rich Low_complexity Low_complexity 1 28 0 615 356 20 4 chr11 39586948 39587198 -109196274 + MIR SINE MIR 4 257 -5 337 244 168 0 chr11 39588127 39588246 -109195226 - MIR SINE MIR -12 250 112 * 2495 324 205 13 chr11 39588209 39589637 -109193835 + L2 LINE L2 1388 3164 -149 4972 78 34 1 chr11 39589637 39590342 -109193130 - L1PB2 LINE L1 -1 6150 5423 2495 324 205 13 chr11 39590342 39590526 -109192946 + L2 LINE L2 3164 3311 -2 297 0 0 0 chr11 39591439 39591472 -109192000 + (TA)n Simple_repeat Simple_repeat 2 34 0 1387 204 80 49 chr11 39591600 39592052 -109191420 + MLT1C LTR MaLR 1 466 -1 295 284 21 21 chr11 39592203 39592298 -109191174 + L2 LINE L2 2945 3039 -233 597 204 121 19 chr11 39592305 39592569 -109190903 + MER33 DNA MER1_type 6 296 -28 283 298 48 57 chr11 39592658 39592690 -109190782 + L2 LINE L2 3171 3202 -111 2327 89 0 22 chr11 39592690 39593005 -109190467 - AluSx SINE Alu -4 308 1 283 298 48 57 chr11 39593005 39593096 -109190376 + L2 LINE L2 3202 3293 -20 226 290 51 108 chr11 39593784 39593998 -109189474 - L2 LINE L2 -1 3271 3070 290 319 103 38 chr11 39594021 39594234 -109189238 + MIR SINE MIR 36 262 0 195 100 0 0 chr11 39595184 39595214 -109188258 + (GA)n Simple_repeat Simple_repeat 2 31 0 2314 98 0 0 chr11 39595593 39595889 -109187583 - AluSg SINE Alu -14 296 1 786 336 44 19 chr11 39596129 39596492 -109186980 - LTR16C LTR ERVL -4 487 116 435 63 0 0 chr11 39597295 39597358 -109186114 + (CA)n Simple_repeat Simple_repeat 1 63 0 300 253 235 24 chr11 39598949 39599119 -109184353 - MIR SINE MIR 0 262 57 236 213 16 0 chr11 39599594 39599655 -109183817 + MER103 DNA DNA 92 153 -13 1067 161 86 17 chr11 39600006 39600314 -109183158 + L1MA8 LINE L1 5966 6291 0 266 269 154 58 chr11 39600378 39600586 -109182886 - L2 LINE L2 0 3313 3086 360 315 55 33 chr11 39600876 39601057 -109182415 + MIR3 SINE MIR 11 195 -13 329 162 15 0 chr11 39601736 39601804 -109181668 + (TG)n Simple_repeat Simple_repeat 1 69 0 917 262 65 10 chr11 39601982 39602291 -109181181 + LTR16A LTR ERVL 113 438 -12 268 349 142 14 chr11 39602295 39602513 -109180959 + L2 LINE L2 2679 2924 -390 24 32 0 0 chr11 39602518 39602549 -109180923 + AT_rich Low_complexity Low_complexity 1 31 0 624 299 72 5 chr11 39602618 39602812 -109180660 - MIR SINE MIR 0 262 56 2621 156 21 28 chr11 39602957 39603490 -109179982 - L1MA9 LINE L1 -2 6310 5782 210 165 24 12 chr11 39603577 39603662 -109179810 + (TA)n Simple_repeat Simple_repeat 2 87 0 318 200 22 22 chr11 39603688 39603868 -109179604 + (TA)n Simple_repeat Simple_repeat 1 180 0 279 214 6 13 chr11 39603951 39604110 -109179362 + (TA)n Simple_repeat Simple_repeat 2 159 0 5738 65 1 0 chr11 39604141 39604909 -109178563 - L1PA7 LINE L1 0 6154 5386 1291 133 68 12 chr11 39604902 39605151 -109178321 - L1MA9 LINE L1 -536 5776 5514 * 206 316 89 0 chr11 39605593 39605672 -109177800 + MIR SINE MIR 119 204 -58 321 267 0 95 chr11 39605985 39606090 -109177382 - MIR SINE MIR -73 135 41 383 325 50 0 chr11 39606271 39606391 -109177081 + L2 LINE L2 3134 3259 -13 717 202 89 65 chr11 39606756 39607003 -109176469 - L2 LINE L2 0 3313 3061 12893 217 17 19 chr11 39607016 39609611 -109173861 - L1PA16 LINE L1 -9 7595 5010 1815 175 38 14 chr11 39609611 39609977 -109173495 - THE1C LTR MaLR 0 375 1 12893 217 17 19 chr11 39609977 39612021 -109171451 - L1PA16 LINE L1 -2594 5010 2964 184 300 0 17 chr11 39612072 39612132 -109171340 - L2 LINE L2 0 3313 3255 22 0 0 0 chr11 39612159 39612181 -109171291 + AT_rich Low_complexity Low_complexity 1 22 0 255 200 0 0 chr11 39612318 39612373 -109171099 - MLT2B2 LTR ERVL 0 515 461 2652 254 23 12 chr11 39612512 39613341 -109170131 - L1PA16 LINE L1 -4513 3068 2231 660 343 48 10 chr11 39614056 39614455 -109169017 - L1PA16 LINE L1 -7166 415 2 207 167 0 0 chr11 39616205 39616247 -109167225 + (TG)n Simple_repeat Simple_repeat 2 43 0 326 233 27 0 chr11 39617372 39617445 -109166027 + MER81 DNA DNA 40 114 0 338 292 62 7 chr11 39617453 39617597 -109165875 - MIR SINE MIR -20 242 91 342 268 65 0 chr11 39617597 39617720 -109165752 + L1ME4a LINE L1 5990 6120 -1 1150 93 32 14 chr11 39618540 39618756 -109164716 + L1PBa LINE L1 1888 2107 -4756 345 248 97 9 chr11 39618768 39618881 -109164591 - MIR SINE MIR -67 141 19 252 59 0 0 chr11 39619481 39619515 -109163957 + (GA)n Simple_repeat Simple_repeat 1 34 0 716 284 59 9 chr11 39619569 39619791 -109163681 - MIR SINE MIR -23 239 7 2367 45 3 0 chr11 39620845 39621134 -109162338 - L1PA3 LINE L1 -3 6152 5863 272 410 0 0 chr11 39621619 39621719 -109161753 - L2 LINE L2 -489 2825 2726 436 273 18 0 chr11 39623254 39623364 -109160108 + MER81 DNA DNA 3 114 0 414 39 0 0 chr11 39623386 39623438 -109160034 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr11 39623524 39623547 -109159925 + AT_rich Low_complexity Low_complexity 1 23 0 392 141 30 10 chr11 39624123 39624222 -109159250 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 683 335 115 24 chr11 39624287 39624660 -109158812 + L2 LINE L2 124 530 -2784 247 303 30 24 chr11 39626215 39626380 -109157092 + HAL1b LINE L1 120 285 -1063 683 233 22 61 chr11 39626663 39626891 -109156581 + MER20 DNA MER1_type 1 219 0 536 282 35 20 chr11 39626901 39627103 -109156369 + MLT1J LTR MaLR 165 369 -142 1640 221 69 118 chr11 39627167 39627659 -109155813 - L2 LINE L2 -507 2807 2288 296 185 154 0 chr11 39627659 39627724 -109155748 + MER116 DNA Mariner 5 79 -1 1640 221 69 118 chr11 39627724 39627847 -109155625 - L2 LINE L2 -1026 2288 2161 2513 117 94 3 chr11 39628053 39628256 -109155216 + MSTA LTR MaLR 1 184 -244 225 0 0 0 chr11 39628256 39628281 -109155191 + (TC)n Simple_repeat Simple_repeat 1 25 0 2513 117 94 3 chr11 39628281 39628469 -109155003 + MSTA LTR MaLR 184 428 0 1606 194 49 12 chr11 39628469 39628792 -109154680 + MER1B DNA MER1_type 1 337 0 371 271 68 53 chr11 39628874 39629081 -109154391 - L1ME3A LINE L1 -17 6153 5944 963 259 88 24 chr11 39629092 39630362 -109153110 - L1ME3A LINE L1 -405 5761 4384 234 214 36 0 chr11 39630464 39630520 -109152952 + GA-rich Low_complexity Low_complexity 2 59 0 499 348 73 28 chr11 39631266 39631466 -109152006 + MLT1K LTR MaLR 16 206 -382 1898 189 15 53 chr11 39631466 39631878 -109151594 - MSTD LTR MaLR 0 396 1 499 348 73 28 chr11 39631878 39632102 -109151370 + MLT1K LTR MaLR 206 459 -129 259 307 59 20 chr11 39632547 39632648 -109150824 + MIR SINE MIR 42 146 -62 296 200 0 14 chr11 39633420 39633490 -109149982 + MLT1L LTR MaLR 544 612 -3 2244 88 3 0 chr11 39633720 39634004 -109149468 + AluSq SINE Alu 1 285 -28 189 0 0 0 chr11 39634004 39634025 -109149447 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 720 93 27 67 chr11 39634101 39634251 -109149221 - MER53 DNA DNA -2 187 44 1845 106 0 0 chr11 39634419 39634656 -109148816 + AluSg/x SINE Alu 66 302 -8 2495 126 3 3 chr11 39635385 39635749 -109147723 - THE1B LTR MaLR 0 364 1 1825 153 121 16 chr11 39636038 39636417 -109147055 - MSTA LTR MaLR -2 426 8 225 0 0 0 chr11 39636419 39636444 -109147028 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chr11 39636443 39636476 -109146996 + (TG)n Simple_repeat Simple_repeat 2 34 0 182 286 24 0 chr11 39637538 39637580 -109145892 + L2 LINE L2 2653 2695 -619 314 322 147 76 chr11 39637820 39638174 -109145298 + L2 LINE L2 2804 3182 -90 207 114 0 0 chr11 39638231 39638266 -109145206 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 182 359 11 22 chr11 39638928 39639020 -109144452 + MIR3 SINE MIR 105 195 -13 309 280 10 40 chr11 39639131 39639231 -109144241 + L2 LINE L2 3216 3312 -1 * 503 317 33 45 chr11 39639222 39639465 -109144007 - MIR SINE MIR -3 259 20 254 96 19 19 chr11 39640132 39640184 -109143288 + Charlie5 DNA MER1_type 2506 2557 -55 1094 156 235 21 chr11 39640184 39640422 -109143050 + AluSg1 SINE Alu 6 294 -15 430 263 57 29 chr11 39640744 39640919 -109142553 - MER117 DNA MER1_type -1 196 17 185 169 17 0 chr11 39641148 39641207 -109142265 + (TA)n Simple_repeat Simple_repeat 1 60 0 575 180 0 0 chr11 39641543 39641632 -109141840 - AluJ/FLAM SINE Alu -223 89 1 526 261 83 47 chr11 39642974 39643227 -109140245 - MIR SINE MIR 0 262 1 279 276 90 90 chr11 39643508 39643653 -109139819 - MIR SINE MIR -71 191 47 277 170 82 143 chr11 39647005 39647152 -109136320 - MLT1H LTR MaLR -2 547 410 343 213 38 0 chr11 39647244 39647324 -109136148 - MLT1H LTR MaLR -321 228 146 279 382 0 9 chr11 39647550 39647660 -109135812 + MER5A DNA MER1_type 73 181 -8 1827 171 10 7 chr11 39649106 39649404 -109134068 + AluJo SINE Alu 1 299 -13 234 309 85 43 chr11 39651369 39651463 -109132009 + MER91C DNA MER1_type 4 101 -39 407 221 25 6 chr11 39651818 39651976 -109131496 + CT-rich Low_complexity Low_complexity 4 164 0 319 213 37 22 chr11 39651995 39652131 -109131341 + CT-rich Low_complexity Low_complexity 4 141 0 628 314 81 28 chr11 39652134 39652339 -109131133 - L2 LINE L2 -1 3312 3086 554 224 71 24 chr11 39652339 39652509 -109130963 - MER5B DNA MER1_type 0 178 1 628 314 81 28 chr11 39652509 39652586 -109130886 - L2 LINE L2 -227 3086 3015 667 248 6 6 chr11 39652644 39652801 -109130671 + MER63A DNA MER1_type 53 209 -1 189 225 0 0 chr11 39652806 39652846 -109130626 - L2 LINE L2 -345 2969 2930 2395 215 36 55 chr11 39653921 39654544 -109128928 - MLT1E2 LTR MaLR 0 626 1 2147 95 0 7 chr11 39654815 39655120 -109128352 - AluSq SINE Alu 0 303 1 455 272 52 0 chr11 39655146 39655282 -109128190 + L2 LINE L2 3156 3298 -15 276 286 20 61 chr11 39655281 39655379 -109128093 - L2 LINE L2 -9 3263 3170 * 1866 186 75 8 chr11 39655435 39655834 -109127638 + MSTA LTR MaLR 1 426 -2 1475 156 21 55 chr11 39656046 39656372 -109127100 + MER58B DNA MER1_type 27 341 0 22 0 0 0 chr11 39657245 39657267 -109126205 + AT_rich Low_complexity Low_complexity 1 22 0 367 288 8 34 chr11 39658402 39658520 -109124952 - MIR3 SINE MIR -12 196 82 784 294 22 0 chr11 39658591 39658819 -109124653 + MIR SINE MIR 11 243 -19 222 173 19 19 chr11 39658826 39658878 -109124594 + (CTA)n Simple_repeat Simple_repeat 1 52 0 342 322 44 0 chr11 39659493 39659676 -109123796 + L1ME3 LINE L1 5691 5881 -281 216 0 0 0 chr11 39660980 39661004 -109122468 + (TA)n Simple_repeat Simple_repeat 2 25 0 190 204 37 37 chr11 39661531 39661585 -109121887 - MIR SINE MIR -66 196 143 23 0 0 0 chr11 39661774 39661797 -109121675 + AT_rich Low_complexity Low_complexity 1 23 0 485 135 42 0 chr11 39661798 39661894 -109121578 - L1MA9 LINE L1 0 6312 6213 358 285 128 34 chr11 39662353 39662532 -109120940 + MIR SINE MIR 67 262 0 205 380 13 13 chr11 39662530 39662609 -109120863 + L2 LINE L2 3190 3268 -4 * 404 303 9 0 chr11 39664540 39664649 -109118823 + MIR3 SINE MIR 97 206 -2 385 393 31 47 chr11 39665003 39665118 -109118354 + L2 LINE L2 2880 2995 -277 180 0 0 0 chr11 39665118 39665138 -109118334 + (TA)n Simple_repeat Simple_repeat 2 21 0 288 53 0 0 chr11 39665138 39665176 -109118296 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 2343 86 0 0 chr11 39665176 39665466 -109118006 - AluY SINE Alu -21 290 1 385 393 31 47 chr11 39665466 39665669 -109117803 + L2 LINE L2 2992 3195 -77 225 250 40 26 chr11 39665773 39665849 -109117623 - MIR3 SINE MIR -43 165 89 308 202 107 12 chr11 39666532 39666616 -109116856 + MER94 DNA DNA 13 104 -30 526 227 0 21 chr11 39666728 39666869 -109116603 - MLT1E3 LTR MaLR -421 203 66 393 270 8 8 chr11 39666765 39666891 -109116581 - MLT2C1 LTR ERVL -250 147 22 * 1491 216 110 35 chr11 39666940 39667402 -109116070 - MLT1D LTR MaLR -8 497 1 315 280 54 11 chr11 39667416 39667509 -109115963 - L2 LINE L2 -19 3253 3157 985 226 6 0 chr11 39667696 39667877 -109115595 - MER5A DNA MER1_type -7 182 1 582 304 177 0 chr11 39667936 39668196 -109115276 + L2 LINE L2 3008 3313 0 188 135 21 219 chr11 39669025 39669121 -109114351 + L3b LINE CR1 1274 1350 -233 491 286 0 0 chr11 39669138 39669250 -109114222 - MER81 DNA DNA -2 112 1 207 339 31 0 chr11 39669260 39669325 -109114147 + L3 LINE CR1 1414 1480 -97 255 31 0 0 chr11 39669661 39669693 -109113779 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 102 0 0 chr11 39669693 39669742 -109113730 + (GA)n Simple_repeat Simple_repeat 2 50 0 290 267 64 47 chr11 39670160 39670332 -109113140 + MLT1J LTR MaLR 7 181 -330 270 233 150 45 chr11 39670429 39670562 -109112910 + MLT1L LTR MaLR 465 611 -4 324 0 0 0 chr11 39670732 39670768 -109112704 + (TG)n Simple_repeat Simple_repeat 2 37 0 483 238 7 41 chr11 39671921 39672068 -109111404 + MER3 DNA MER1_type 68 209 0 30 0 0 0 chr11 39672223 39672253 -109111219 + AT_rich Low_complexity Low_complexity 1 30 0 383 320 59 23 chr11 39672347 39672363 -109111109 + MIR SINE MIR 19 33 -229 2733 59 50 0 chr11 39672363 39672721 -109110751 + L1PA7 LINE L1 5773 6148 -6 383 320 59 23 chr11 39672721 39672923 -109110549 + MIR SINE MIR 33 245 -17 210 174 0 0 chr11 39672928 39672974 -109110498 + (TG)n Simple_repeat Simple_repeat 1 46 0 193 398 108 25 chr11 39673315 39673629 -109109843 + L2 LINE L2 2814 3153 -119 502 224 7 41 chr11 39673873 39674020 -109109452 + MER3 DNA MER1_type 68 209 0 237 224 35 0 chr11 39676505 39676563 -109106909 + MIR SINE MIR 132 191 -71 521 97 39 0 chr11 39678454 39678557 -109104915 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 183 394 0 0 chr11 39679089 39679160 -109104312 - L2 LINE L2 0 3272 3202 262 314 51 5 chr11 39679296 39679455 -109104017 + MIR SINE MIR 18 251 -11 243 228 128 100 chr11 39680546 39680726 -109102746 - MLT1J1 LTR MaLR -25 421 237 803 195 47 18 chr11 39680860 39681029 -109102443 - MLT1J1 LTR MaLR -270 176 3 192 40 0 0 chr11 39681295 39681320 -109102152 + (CA)n Simple_repeat Simple_repeat 1 25 0 665 271 28 10 chr11 39731697 39732042 -109051430 - L1M1 LINE L1 -4457 3289 2829 286 155 70 0 chr11 39732038 39732109 -109051363 + L1MA8 LINE L1 6216 6291 0 * 425 271 0 30 chr11 39732163 39732329 -109051143 - L1MDa LINE L1 -4715 1825 1665 2475 90 0 0 chr11 39732456 39732790 -109050682 - L1PA7 LINE L1 -2 6152 5819 276 30 0 0 chr11 39733748 39733781 -109049691 + (CA)n Simple_repeat Simple_repeat 1 33 0 10834 131 8 17 chr11 39733808 39735667 -109047805 - Tigger1 DNA MER2_type -58 2360 519 3258 69 23 2 chr11 39735667 39736206 -109047266 + L1P3 LINE L1 5169 5715 -439 428 35 17 0 chr11 39736486 39736544 -109046928 + (CA)n Simple_repeat Simple_repeat 2 60 0 198 273 55 0 chr11 39736744 39736799 -109046673 - L2 LINE L2 -47 3225 3168 327 121 0 0 chr11 39737174 39737232 -109046240 + (TG)n Simple_repeat Simple_repeat 1 58 0 239 321 78 47 chr11 39737979 39738172 -109045300 + MIR SINE MIR 20 218 -44 23 33 0 0 chr11 39738743 39738773 -109044699 + AT_rich Low_complexity Low_complexity 1 30 0 714 301 46 0 chr11 39739223 39739505 -109043967 + L1ME3A LINE L1 5455 5749 -421 714 254 13 49 chr11 39739510 39739734 -109043738 + L1ME3A LINE L1 5941 6156 -14 331 278 148 18 chr11 39739728 39739951 -109043521 + HAL1 LINE L1 1549 1800 -707 * 21 0 0 0 chr11 39740207 39740228 -109043244 + AT_rich Low_complexity Low_complexity 1 21 0 318 266 47 84 chr11 39740529 39740804 -109042668 + HAL1 LINE L1 2228 2492 -15 1651 220 40 42 chr11 39740898 39741375 -109042097 - MLT1D LTR MaLR -7 498 23 242 241 0 0 chr11 39742159 39742213 -109041259 + (TA)n Simple_repeat Simple_repeat 2 55 0 217 321 211 0 chr11 39742274 39742383 -109041089 - MIR SINE MIR -111 151 20 321 262 136 0 chr11 39742432 39742535 -109040937 - L2 LINE L2 0 3313 3197 2181 115 0 3 chr11 39742557 39742886 -109040586 - AluSc SINE Alu 0 309 1 322 399 31 0 chr11 39743889 39744052 -109039420 + MIR SINE MIR 20 187 -75 1676 144 107 4 chr11 39744067 39744330 -109039142 + AluSx SINE Alu 1 290 -22 343 327 45 36 chr11 39744610 39744833 -109038639 - MIR SINE MIR -14 248 24 2578 54 0 13 chr11 39745825 39746139 -109037333 + AluY SINE Alu 1 310 -1 183 302 23 35 chr11 39746265 39746351 -109037121 + L2 LINE L2 2918 3002 -270 268 270 99 9 chr11 39746982 39747093 -109036379 + MIR SINE MIR 75 195 -67 639 209 92 10 chr11 39749063 39749259 -109034213 - MER69 DNA AcHobo -8 2518 2307 1373 227 10 52 chr11 39749273 39749657 -109033815 + MLT1A2 LTR MaLR 1 368 -6 1894 214 177 15 chr11 39749863 39750455 -109033017 - MER69 DNA AcHobo -1754 772 85 773 227 67 4 chr11 39750455 39750724 -109032748 - L1M4 LINE L1 -3539 2607 2322 182 349 12 0 chr11 39751121 39751204 -109032268 + L2 LINE L2 2419 2502 -812 35 0 0 0 chr11 39751622 39751657 -109031815 + AT_rich Low_complexity Low_complexity 1 35 0 312 304 18 18 chr11 39752061 39752173 -109031299 - MIR3 SINE MIR -7 201 90 1504 226 44 16 chr11 39752253 39752704 -109030768 + L1MB7 LINE L1 4577 5040 -1106 1800 135 57 30 chr11 39752831 39753165 -109030307 - MER61A LTR ERV1 0 343 1 6983 97 12 8 chr11 39753165 39754538 -109028934 - MER61A-int LTR ERV1 0 5217 3796 760 183 19 29 chr11 39754538 39754771 -109028701 + L1MB7 LINE L1 5202 5432 -742 1748 227 65 11 chr11 39754773 39755298 -109028174 + L1MB7 LINE L1 5617 6169 -15 216 0 0 0 chr11 39755302 39755326 -109028146 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 363 24 40 chr11 39755332 39755456 -109028016 - MIR SINE MIR -93 169 48 322 308 45 26 chr11 39756274 39756430 -109027042 + MIR SINE MIR 103 261 -1 750 189 54 38 chr11 39756462 39756647 -109026825 - MER3 DNA MER1_type 0 209 22 2575 110 6 3 chr11 39758834 39759197 -109024275 + THE1B LTR MaLR 1 364 0 232 289 54 7 chr11 39759331 39759454 -109024018 + (TATG)n Simple_repeat Simple_repeat 4 137 -22 204 40 0 0 chr11 39759454 39759479 -109023993 + (CA)n Simple_repeat Simple_repeat 1 25 0 232 289 54 7 chr11 39759479 39759504 -109023968 + (TATG)n Simple_repeat Simple_repeat 137 159 0 240 141 33 54 chr11 39759520 39759612 -109023860 + (TG)n Simple_repeat Simple_repeat 1 90 0 614 278 165 0 chr11 39759616 39759828 -109023644 + MIR SINE MIR 13 259 -3 208 324 0 0 chr11 39760635 39760703 -109022769 + L2 LINE L2 3159 3226 -87 223 226 0 19 chr11 39761313 39761366 -109022106 + L2 LINE L2 3262 3313 0 595 300 21 33 chr11 39761817 39762057 -109021415 - MIR SINE MIR -25 237 1 270 316 18 35 chr11 39764446 39764560 -109018912 + MIR SINE MIR 11 122 -140 1024 149 59 5 chr11 39764769 39764991 -109018481 - L1MA7 LINE L1 -7 6284 6051 575 190 0 156 chr11 39764991 39765228 -109018244 + L1MA7 LINE L1 5874 6073 -218 839 181 1 30 chr11 39765254 39765459 -109018013 - MLT1B LTR MaLR -6 384 173 1978 159 26 6 chr11 39765494 39765839 -109017633 - MLT1A1 LTR MaLR -13 352 1 394 319 48 34 chr11 39766289 39766496 -109016976 + MIR SINE MIR 47 256 -6 1032 239 22 70 chr11 39766652 39767007 -109016465 - MER46C DNA MER2_type 0 338 1 22 0 0 0 chr11 39767100 39767122 -109016350 + AT_rich Low_complexity Low_complexity 1 22 0 427 283 99 36 chr11 39768176 39768399 -109015073 - MER102b DNA MER1_type -13 328 92 304 122 82 0 chr11 39768401 39768450 -109015022 - MIR SINE MIR -87 175 123 281 301 0 38 chr11 39768506 39768639 -109014833 + MLT1H LTR MaLR 80 207 -342 232 344 41 33 chr11 39768834 39768956 -109014516 - MIR SINE MIR -121 141 19 1680 217 32 51 chr11 39769355 39769829 -109013643 - MLT1C LTR MaLR -2 465 1 2375 56 7 3 chr11 39770757 39771059 -109012413 - AluY SINE Alu -8 303 1 2372 66 23 3 chr11 39771444 39771749 -109011723 - AluY SINE Alu 0 311 1 374 257 55 0 chr11 39771964 39772073 -109011399 + MIR SINE MIR 34 148 -114 1058 222 50 60 chr11 39772074 39772511 -109010961 - MER69 DNA AcHobo -4 2522 2090 549 249 44 4 chr11 39772662 39772857 -109010615 - MLT1B LTR MaLR -11 373 165 329 161 0 0 chr11 39772861 39772917 -109010555 - MLT1B LTR MaLR -318 56 1 780 289 132 25 chr11 39774128 39774778 -109008694 - L2 LINE L2 0 3313 2592 879 323 104 34 chr11 39774967 39775867 -109007605 - L2 LINE L2 -2264 1050 88 408 281 54 18 chr11 39776046 39776213 -109007259 - MIR SINE MIR -76 186 14 364 306 186 0 chr11 39776278 39776402 -109007070 + L2 LINE L2 3121 3267 -5 229 197 0 49 chr11 39776424 39776485 -109006987 + T-rich Low_complexity Low_complexity 5 62 0 435 38 0 0 chr11 39776934 39776987 -109006485 + (TG)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr11 39776986 39777009 -109006463 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 384 22 0 0 chr11 39777640 39777685 -109005787 + (TG)n Simple_repeat Simple_repeat 2 46 0 341 342 20 35 chr11 39777803 39778005 -109005467 - MIR SINE MIR -42 220 22 2234 103 0 3 chr11 39778744 39779045 -109004427 + AluSx SINE Alu 2 301 -11 180 111 0 0 chr11 39779481 39779508 -109003964 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 279 278 113 40 chr11 39779509 39779660 -109003812 - MIR SINE MIR -16 246 85 2401 91 45 6 chr11 39779660 39780013 -109003459 - THE1C LTR MaLR 0 375 9 372 259 70 21 chr11 39782434 39782577 -109000895 - MLT1J LTR MaLR -257 254 105 391 373 81 18 chr11 39783486 39783908 -108999564 - L2 LINE L2 -213 3059 2608 843 252 67 17 chr11 39785077 39785315 -108998157 + MIR SINE MIR 12 261 -1 324 240 40 0 chr11 39786172 39786247 -108997225 - ORSL DNA AcHobo -1 274 197 25 31 0 0 chr11 39786622 39786654 -108996818 + AT_rich Low_complexity Low_complexity 1 32 0 527 266 181 5 chr11 39786654 39786842 -108996630 - MIR SINE MIR -14 248 28 402 314 39 0 chr11 39787813 39788017 -108995455 + L1ME LINE L1 5597 5808 -313 1240 167 104 5 chr11 39788052 39788273 -108995199 + AluJb SINE Alu 1 243 -69 2264 114 9 0 chr11 39789129 39789479 -108993993 + L1MA3 LINE L1 5843 6195 -110 2783 213 80 110 chr11 39789566 39790661 -108992811 + L1M2 LINE L1 466 1527 -5962 2063 270 25 3 chr11 39790671 39791319 -108992153 + L1M2 LINE L1 2289 2950 -4546 6720 213 47 16 chr11 39791332 39793285 -108990187 + L1M2 LINE L1 3294 5309 -2256 4775 152 29 56 chr11 39793278 39794683 -108988789 + L1M2 LINE L1 5736 7096 -614 * 192 77 0 0 chr11 39794975 39795001 -108988471 + (TC)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr11 39795457 39795480 -108987992 + AT_rich Low_complexity Low_complexity 1 23 0 1283 177 71 41 chr11 39795905 39796199 -108987273 + AluJo SINE Alu 1 303 -9 497 348 31 13 chr11 39798314 39798541 -108984931 - MIR SINE MIR -24 238 8 239 318 47 0 chr11 39798660 39798745 -108984727 + MIR SINE MIR 53 141 -121 413 276 58 45 chr11 39799129 39799285 -108984187 - MIR SINE MIR 0 262 105 1459 12 0 0 chr11 39799867 39800033 -108983439 + L1PA2 LINE L1 5986 6151 -4 486 294 24 8 chr11 39801094 39801220 -108982252 + LTR16C LTR ERVL 152 279 -212 290 246 0 0 chr11 39801406 39801463 -108982009 + LTR16C LTR ERVL 286 342 -149 1612 147 163 10 chr11 39803004 39803311 -108980161 - MER47A DNA MER2_type 0 366 13 650 243 200 50 chr11 39803326 39803791 -108979681 - MLT1F1 LTR MaLR -8 559 25 486 218 61 14 chr11 39804302 39804449 -108979023 - MIR SINE MIR -6 256 103 591 261 37 41 chr11 39804479 39804872 -108978600 - L1ME LINE L1 -616 5554 5165 1160 265 61 28 chr11 39805320 39805997 -108977475 - L1ME LINE L1 -2199 3947 3238 27 29 0 0 chr11 39806021 39806055 -108977417 + AT_rich Low_complexity Low_complexity 1 34 0 228 342 13 13 chr11 39806080 39806238 -108977234 - L1ME LINE L1 -3060 3086 2929 321 300 153 12 chr11 39806323 39806493 -108976979 - L1ME3A LINE L1 -7 6163 5970 327 278 52 52 chr11 39806574 39806747 -108976725 - L1MC5 LINE L1 -453 7508 7336 1888 104 41 0 chr11 39806883 39807152 -108976320 - AluSc SINE Alu -5 304 25 1277 288 123 9 chr11 39808360 39808815 -108974657 + MLT1G1 LTR MaLR 82 588 -7 634 238 19 12 chr11 39809068 39809228 -108974244 + MIR SINE MIR 12 172 -90 2088 153 109 8 chr11 39809587 39809972 -108973500 - MSTA LTR MaLR -2 426 3 6737 183 25 10 chr11 39809974 39811207 -108972265 - MSTA-int LTR MaLR 0 1651 400 1088 83 0 21 chr11 39811210 39811355 -108972117 + AluY SINE Alu 1 142 -169 1360 119 9 26 chr11 39811456 39811683 -108971789 - AluY SINE Alu -88 223 1 2461 151 10 0 chr11 39811684 39812081 -108971391 - MSTA-int LTR MaLR -1250 401 1 1564 153 79 31 chr11 39812081 39812442 -108971030 - MSTA LTR MaLR 0 428 1 1592 130 35 32 chr11 39812631 39812916 -108970556 - THE1C LTR MaLR -89 286 1 10615 109 28 11 chr11 39812916 39814470 -108969002 - THE1C-int LTR MaLR 0 1580 1 2092 144 27 27 chr11 39814470 39814845 -108968627 - THE1C LTR MaLR 0 375 1 2062 134 7 0 chr11 39814916 39815215 -108968257 - AluSq SINE Alu -12 301 1 23 68 0 0 chr11 39815278 39815322 -108968150 + AT_rich Low_complexity Low_complexity 1 44 0 876 288 25 8 chr11 39815658 39815898 -108967574 - MIR SINE MIR -2 260 17 933 223 129 6 chr11 39816540 39816890 -108966582 - Charlie4a DNA MER1_type -89 419 27 488 329 13 0 chr11 39817083 39817235 -108966237 + MIR3 SINE MIR 52 205 -3 2645 190 19 25 chr11 39817881 39818408 -108965064 + L1MCa LINE L1 474 997 -5429 2138 106 11 44 chr11 39818409 39818776 -108964696 + L1MA5 LINE L1 5428 5782 -518 872 204 0 0 chr11 39818776 39818933 -108964539 + FRAM SINE Alu 1 153 -23 2373 133 104 8 chr11 39818934 39819407 -108964065 + L1MA5 LINE L1 5771 6288 -12 2951 148 63 3 chr11 39819416 39820003 -108963469 + L1MCa LINE L1 982 1603 -4823 1404 253 106 25 chr11 39820128 39820612 -108962860 + MLT1H LTR MaLR 1 606 -18 370 298 50 0 chr11 39820643 39820764 -108962708 + MIR SINE MIR 65 191 -71 845 242 32 52 chr11 39820951 39821199 -108962273 + MIR SINE MIR 10 252 -10 191 35 0 35 chr11 39821203 39821232 -108962240 + (TTA)n Simple_repeat Simple_repeat 1 28 0 213 136 0 23 chr11 39821547 39821591 -108961881 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 512 293 69 5 chr11 39821799 39821987 -108961485 + MIR SINE MIR 51 250 -12 351 309 68 21 chr11 39823457 39823648 -108959824 + MIR SINE MIR 63 262 0 2151 98 44 0 chr11 39824431 39824726 -108958746 + AluSc SINE Alu 1 308 -1 351 282 0 12 chr11 39825227 39825312 -108958160 - MIR SINE MIR -149 113 30 344 293 210 6 chr11 39826295 39826452 -108957020 + MIR SINE MIR 1 189 -73 258 286 0 32 chr11 39827515 39827578 -108955894 + L2 LINE L2 3197 3257 -15 271 248 50 40 chr11 39827741 39827842 -108955630 + MIR SINE MIR 161 262 0 707 299 66 69 chr11 39829685 39829751 -108953721 - MER115 DNA AcHobo 0 693 628 1955 129 14 0 chr11 39829751 39830054 -108953418 - AluSx SINE Alu 0 307 1 707 299 66 69 chr11 39830054 39830533 -108952939 - MER115 DNA AcHobo -65 628 120 534 304 84 30 chr11 39831001 39831238 -108952234 + MIR SINE MIR 12 261 -1 1812 184 3 0 chr11 39831398 39831703 -108951769 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr11 39831956 39831993 -108951479 + (TG)n Simple_repeat Simple_repeat 1 37 0 2292 106 0 3 chr11 39833004 39833315 -108950157 - AluSp SINE Alu -3 310 1 21 0 0 0 chr11 39833410 39833431 -108950041 + AT_rich Low_complexity Low_complexity 1 21 0 912 179 60 55 chr11 39834483 39834701 -108948771 + MER20 DNA MER1_type 1 219 0 337 272 76 0 chr11 39834706 39834798 -108948674 - L3 LINE CR1 -270 1307 1209 28 48 0 0 chr11 39834801 39834843 -108948629 + AT_rich Low_complexity Low_complexity 1 42 0 2514 4 0 0 chr11 39835291 39835563 -108947909 + AluYa5 SINE Alu 39 310 -1 222 288 15 15 chr11 39836600 39836666 -108946806 + MIR3 SINE MIR 10 75 -133 320 286 116 27 chr11 39837298 39837410 -108946062 + MIR3 SINE MIR 48 169 -39 3557 159 32 3 chr11 39837974 39838591 -108944881 + MER41B LTR ERV1 1 635 0 647 203 8 0 chr11 39839216 39839349 -108944123 - L1MA9 LINE L1 -40 6272 6139 962 174 71 75 chr11 39839353 39839606 -108943866 - LTR8A LTR ERV1 0 727 476 2533 137 19 36 chr11 39839768 39840234 -108943238 - LTR8A LTR ERV1 -269 458 1 516 273 50 27 chr11 39840234 39840454 -108943018 - L1MA9 LINE L1 -174 6138 5914 2631 170 37 9 chr11 39840500 39841051 -108942421 - L1MA9 LINE L1 -523 5789 5224 684 217 0 0 chr11 39841076 39841196 -108942276 - FLAM_A SINE Alu -11 122 3 218 250 14 14 chr11 39841570 39841642 -108941830 + (TA)n Simple_repeat Simple_repeat 2 73 0 188 194 0 0 chr11 39842248 39842284 -108941188 - L2 LINE L2 -49 3223 3188 269 196 0 0 chr11 39842841 39842892 -108940580 - L1ME3A LINE L1 -9 6161 6111 1658 271 64 35 chr11 39842941 39843991 -108939481 - L1MEc LINE L1 -2827 3388 2309 370 321 72 17 chr11 39844032 39844269 -108939203 - L1MEc LINE L1 -4122 2274 2025 316 281 44 44 chr11 39844371 39844485 -108938987 - L3 LINE CR1 -674 903 790 2595 128 0 3 chr11 39844543 39844919 -108938553 + THE1C LTR MaLR 1 375 0 24 67 0 0 chr11 39845235 39845280 -108938192 + AT_rich Low_complexity Low_complexity 1 45 0 386 317 55 31 chr11 39845391 39845684 -108937788 - MLT1H LTR MaLR -16 533 196 261 296 49 12 chr11 39846544 39846706 -108936766 + L1ME4a LINE L1 5940 6107 -14 314 349 58 81 chr11 39846971 39847266 -108936206 + L2 LINE L2 2967 3254 -18 592 309 48 0 chr11 39847424 39847612 -108935860 - L2 LINE L2 0 3313 3117 882 155 0 0 chr11 39847618 39847760 -108935712 - L1MB1 LINE L1 -467 5701 5560 * 2234 167 29 37 chr11 39847758 39848213 -108935259 + L1MB1 LINE L1 5696 6146 -22 235 313 76 15 chr11 39848233 39848364 -108935108 - L2 LINE L2 -195 3118 2980 875 211 118 7 chr11 39848382 39848680 -108934792 - MER33 DNA MER1_type 0 324 1 2446 55 10 3 chr11 39848981 39849290 -108934182 - AluY SINE Alu 0 311 1 21 82 0 0 chr11 39849325 39849374 -108934098 + AT_rich Low_complexity Low_complexity 1 49 0 24236 29 3 1 chr11 39849374 39853104 -108930368 - L1PA3 LINE L1 -3 6152 2423 970 291 132 12 chr11 39853708 39854110 -108929362 - LTR16A LTR ERVL 0 450 1 21 71 0 0 chr11 39854143 39854185 -108929287 + AT_rich Low_complexity Low_complexity 1 42 0 379 321 62 0 chr11 39854674 39854867 -108928605 - L1ME LINE L1 -369 5752 5548 265 241 0 74 chr11 39855188 39855296 -108928176 - LTR67 LTR ERVL 0 557 458 1969 214 37 18 chr11 39855334 39855792 -108927680 + MLT1C LTR MaLR 1 467 0 371 217 9 0 chr11 39856276 39856382 -108927090 + GA-rich Low_complexity Low_complexity 3 109 0 750 281 50 23 chr11 39856416 39856637 -108926835 - MIR SINE MIR -15 247 21 191 235 20 20 chr11 39857054 39857105 -108926367 + MIR SINE MIR 96 146 -62 1078 176 19 23 chr11 39857445 39857661 -108925811 - MER20 DNA MER1_type -4 215 1 3281 131 4 57 chr11 39857884 39858528 -108924944 + MER4B LTR ERV1 1 779 0 217 336 277 0 chr11 39858896 39859033 -108924439 - MIR3 SINE MIR -6 202 28 1663 162 10 40 chr11 39859200 39859503 -108923969 - AluJo SINE Alu -10 302 9 230 311 22 22 chr11 39859966 39860056 -108923416 - L3 LINE CR1 -217 1360 1271 343 344 22 22 chr11 39860219 39860446 -108923026 + HERV16 LTR ERVL 4667 4893 -103 445 277 166 20 chr11 39861003 39861256 -108922216 + L2 LINE L2 3011 3300 -13 513 248 115 25 chr11 39861301 39861458 -108922014 - MLT1G1 LTR MaLR -8 582 412 12180 94 36 1 chr11 39861488 39864046 -108919426 - L1PA7 LINE L1 0 6154 3531 4506 103 4 0 chr11 39864046 39864724 -108918748 + L1PA7 LINE L1 2837 3517 -2629 1054 277 28 56 chr11 39864729 39865119 -108918353 - MLT1G1 LTR MaLR -207 388 10 1721 164 18 24 chr11 39865122 39865457 -108918015 + THE1C LTR MaLR 28 360 -15 1974 120 0 0 chr11 39865839 39866106 -108917366 - AluSc SINE Alu -4 305 39 21 0 0 0 chr11 39869199 39869220 -108914252 + AT_rich Low_complexity Low_complexity 1 21 0 1013 278 68 20 chr11 39869311 39869664 -108913808 + MLT1H LTR MaLR 7 376 -173 189 0 0 0 chr11 39869703 39869724 -108913748 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 331 255 31 20 chr11 39870268 39870366 -108913106 + MIR SINE MIR 104 202 -60 1434 144 33 6 chr11 39870870 39871300 -108912172 - LTR54 LTR ERV1 0 510 6 270 329 189 21 chr11 39871427 39871570 -108911902 - L3 LINE CR1 -99 1478 1312 552 204 7 49 chr11 39871836 39871978 -108911494 + Charlie8 DNA MER1_type 87 222 -2195 259 323 31 10 chr11 39872116 39872212 -108911260 + MER5B DNA MER1_type 4 101 -77 357 213 299 24 chr11 39873163 39873290 -108910182 - MIR SINE MIR -1 261 100 201 362 92 31 chr11 39873598 39873761 -108909711 + MER5A DNA MER1_type 14 186 -3 381 292 0 18 chr11 39873851 39873964 -108909508 + L2 LINE L2 3169 3279 -34 296 271 76 59 chr11 39874245 39874363 -108909109 - L2 LINE L2 -215 3057 2938 258 239 33 65 chr11 39874589 39874681 -108908791 + MIR SINE MIR 118 206 -56 364 385 50 5 chr11 39875592 39875813 -108907659 + MIR SINE MIR 32 262 0 183 162 0 0 chr11 39875817 39875854 -108907618 + (TTA)n Simple_repeat Simple_repeat 3 39 0 420 291 17 0 chr11 39876032 39876149 -108907323 - MIR3 SINE MIR -36 172 54 776 297 80 45 chr11 39876161 39876562 -108906910 + LTR16A LTR ERVL 14 428 -22 447 202 64 0 chr11 39876565 39876659 -108906813 - FRAM SINE Alu -76 100 1 281 294 62 31 chr11 39877606 39877766 -108905706 - MLT1J LTR MaLR -344 167 3 25 0 0 0 chr11 39877768 39877793 -108905679 + AT_rich Low_complexity Low_complexity 1 25 0 310 322 49 0 chr11 39877793 39877936 -108905536 - L1ME3A LINE L1 -224 5946 5797 395 286 143 39 chr11 39878039 39878298 -108905174 - L1ME3A LINE L1 -2144 5664 5379 26 82 0 0 chr11 39878338 39878399 -108905073 + AT_rich Low_complexity Low_complexity 1 61 0 511 273 172 55 chr11 39878409 39879510 -108903962 - L1ME3A LINE L1 -846 5300 4071 4016 145 25 27 chr11 39880770 39881480 -108901992 + MER50 LTR ERV1 2 710 -24 301 316 60 0 chr11 39883053 39883186 -108900286 - MIR SINE MIR -56 206 66 204 97 0 0 chr11 39883341 39883372 -108900100 + (TA)n Simple_repeat Simple_repeat 1 31 0 618 328 45 4 chr11 39883956 39884203 -108899269 + MIR SINE MIR 6 262 0 240 208 83 28 chr11 39884610 39884682 -108898790 - L2 LINE L2 -9 3304 3229 437 308 132 60 chr11 39884754 39885118 -108898354 - L3 LINE CR1 -94 1483 1094 24 100 0 0 chr11 39885777 39885857 -108897615 + AT_rich Low_complexity Low_complexity 1 80 0 1906 263 94 21 chr11 39885858 39886217 -108897255 + L1MCc LINE L1 1 333 -6089 2113 138 30 25 chr11 39886217 39886579 -108896893 + THE1B LTR MaLR 1 364 0 1906 263 94 21 chr11 39886579 39886935 -108896537 + L1MCc LINE L1 333 1116 -5306 4166 182 28 19 chr11 39887039 39887936 -108895536 - L1PA15 LINE L1 -1072 5074 4170 5548 132 15 38 chr11 39887938 39889069 -108894403 + L1PA15 LINE L1 5070 6164 -1 222 264 56 0 chr11 39889473 39889545 -108893927 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 239 226 0 21 chr11 39889556 39889649 -108893823 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1205 255 96 22 chr11 39889821 39890593 -108892879 + L1MCc LINE L1 2081 3009 -3932 527 310 60 0 chr11 39890904 39891088 -108892384 + MIR SINE MIR 66 260 -2 428 341 123 3 chr11 39892158 39892492 -108890980 + L1ME4a LINE L1 5724 6097 -24 244 309 118 26 chr11 39892527 39892679 -108890793 - L2 LINE L2 -1 3271 3106 1883 275 240 40 chr11 39892804 39894419 -108889053 - L2 LINE L2 -25 3288 1330 2058 215 29 12 chr11 39894419 39894838 -108888634 + MSTB LTR MaLR 1 426 0 814 264 161 11 chr11 39894858 39895119 -108888353 - L2 LINE L2 -2008 1306 1007 21 57 0 0 chr11 39895561 39895596 -108887876 + AT_rich Low_complexity Low_complexity 1 35 0 1661 271 27 16 chr11 39896147 39896589 -108886883 - ERVL LTR ERVL -3887 1877 1431 2125 222 15 29 chr11 39896705 39897450 -108886022 + ERVL LTR ERVL 3392 4183 -1581 308 160 27 67 chr11 39897390 39897465 -108886007 - ERVL LTR ERVL -1581 4183 4112 * 1096 210 65 52 chr11 39897633 39897923 -108885549 + ERVL LTR ERVL 4163 4456 -1308 823 199 110 5 chr11 39898399 39898590 -108884882 + MER2 DNA MER2_type 1 211 -134 32 26 0 0 chr11 39898595 39898634 -108884838 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr11 39898637 39898657 -108884815 + (CATTT)n Simple_repeat Simple_repeat 3 22 0 182 36 0 36 chr11 39898703 39898731 -108884741 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 457 287 24 48 chr11 39899025 39899192 -108884280 - MIR SINE MIR -4 258 96 479 265 29 0 chr11 39899835 39899971 -108883501 + MER103 DNA DNA 8 147 -19 506 310 32 21 chr11 39900482 39900669 -108882803 + MIR3 SINE MIR 19 207 -1 387 206 116 53 chr11 39902486 39902675 -108880797 + L1ME4a LINE L1 5711 5911 -210 448 253 20 53 chr11 39902912 39903062 -108880410 - MER45A DNA AcHobo -19 159 15 212 392 36 10 chr11 39903156 39903350 -108880122 - L3 LINE CR1 -638 939 741 1152 240 0 11 chr11 39903700 39903971 -108879501 - AluJo SINE Alu -17 295 28 189 279 0 0 chr11 39904228 39904271 -108879201 - MIR3 SINE MIR -49 159 117 689 238 36 18 chr11 39904273 39904441 -108879031 - MER58 DNA MER1_type -170 171 1 251 245 123 38 chr11 39904736 39904842 -108878630 - L1ME4a LINE L1 -22 6099 5985 193 179 71 54 chr11 39906403 39906459 -108877013 - L2 LINE L2 -3 3269 3213 1063 205 5 15 chr11 39906610 39906815 -108876657 + MER3 DNA MER1_type 1 203 -6 2877 145 68 10 chr11 39907700 39908197 -108875275 - MER1A DNA MER1_type 0 527 2 381 219 66 101 chr11 39908292 39908520 -108874952 + MER106A DNA MER1_type 10 229 -7 227 344 175 13 chr11 39909589 39909743 -108873729 - MIR SINE MIR -41 221 43 257 232 84 32 chr11 39909829 39909924 -108873548 - MLT1H LTR MaLR -16 533 434 1639 126 88 32 chr11 39910502 39910787 -108872685 - AluSx SINE Alu -11 301 1 234 230 86 30 chr11 39911376 39911531 -108871941 + L1MC/D LINE L1 5707 5877 -244 22 56 0 0 chr11 39911544 39911580 -108871892 + AT_rich Low_complexity Low_complexity 1 36 0 1226 310 72 24 chr11 39911589 39912416 -108871056 - L2 LINE L2 -54 3259 2384 198 282 59 47 chr11 39913077 39913162 -108870310 + MIR SINE MIR 65 150 -58 521 333 39 22 chr11 39914236 39914626 -108868846 + LTR16A LTR ERVL 24 450 0 581 292 46 40 chr11 39914626 39914951 -108868521 + L1ME3A LINE L1 5589 5915 -255 268 320 62 8 chr11 39915051 39915179 -108868293 - MIR SINE MIR -62 200 66 2022 146 57 40 chr11 39915442 39915866 -108867606 + MSTB1 LTR MaLR 2 432 0 189 291 18 0 chr11 39917698 39917753 -108865719 - L2 LINE L2 0 3313 3258 25 0 0 0 chr11 39917775 39917800 -108865672 + AT_rich Low_complexity Low_complexity 1 25 0 325 333 43 26 chr11 39921897 39922014 -108861458 + L2 LINE L2 3154 3272 0 290 324 137 33 chr11 39922165 39922347 -108861125 + MIR SINE MIR 49 249 -13 2008 151 0 0 chr11 39922348 39922640 -108860832 - AluSx SINE Alu -18 294 3 399 140 19 28 chr11 39922819 39922926 -108860546 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 0 0 0 chr11 39923087 39923108 -108860364 + AT_rich Low_complexity Low_complexity 1 21 0 1004 211 48 0 chr11 39923714 39923923 -108859549 - MER20 DNA MER1_type 0 219 1 496 284 130 6 chr11 39923938 39924107 -108859365 - MIR SINE MIR -2 260 71 1078 222 52 3 chr11 39924429 39924706 -108858766 + L1MD3 LINE L1 6149 6321 -23 201 328 17 42 chr11 39924750 39924869 -108858603 + MIR SINE MIR 32 147 -61 1956 149 42 20 chr11 39926458 39926814 -108856658 + THE1B LTR MaLR 1 364 0 3997 160 42 24 chr11 39927307 39928064 -108855408 + Tigger2 DNA MER2_type 1 771 -1947 1199 117 165 22 chr11 39928091 39928321 -108855151 + Tigger2 DNA MER2_type 2456 2718 0 231 289 92 0 chr11 39929261 39929337 -108854135 - MER63 DNA MER1_type -1 1059 977 42 57 0 0 chr11 39929478 39929548 -108853924 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr11 39929998 39930022 -108853450 + AT_rich Low_complexity Low_complexity 1 24 0 1959 219 43 18 chr11 39930164 39930657 -108852815 - MLT1D LTR MaLR 0 505 1 832 278 95 32 chr11 39930809 39931179 -108852293 + MER110 LTR ERV1 2 394 -97 21 0 0 0 chr11 39931188 39931209 -108852263 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 39931511 39931537 -108851935 + AT_rich Low_complexity Low_complexity 1 26 0 660 158 0 38 chr11 39931572 39931755 -108851717 + CT-rich Low_complexity Low_complexity 3 178 0 300 286 122 24 chr11 39932628 39932915 -108850557 - L1ME4a LINE L1 -191 6348 6034 1640 247 30 8 chr11 39933189 39933691 -108849781 - L1ME4a LINE L1 -3362 3202 2690 1445 127 25 4 chr11 39933705 39933941 -108849531 - L1MB5 LINE L1 -1 6173 5933 3349 244 49 23 chr11 39933942 39935593 -108847879 - L1MCb LINE L1 -4863 1182 1 1255 320 40 32 chr11 39935685 39936309 -108847163 + L2 LINE L2 1261 1889 -1425 274 355 19 19 chr11 39937054 39937161 -108846311 + MIR SINE MIR 35 141 -67 416 251 118 37 chr11 39938619 39938806 -108844666 + MIR SINE MIR 61 262 0 203 261 152 33 chr11 39938946 39939038 -108844434 + MIR SINE MIR 50 152 -110 371 247 45 39 chr11 39939095 39939249 -108844223 - MER103 DNA DNA -2 164 10 437 277 15 82 chr11 39940380 39940575 -108842897 + MIR SINE MIR 49 230 -32 268 278 42 89 chr11 39940647 39940838 -108842634 + L2 LINE L2 2625 2806 -508 222 105 0 0 chr11 39941088 39941126 -108842346 + (TC)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr11 39941126 39941146 -108842326 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 258 32 0 0 chr11 39941145 39941176 -108842296 + (GA)n Simple_repeat Simple_repeat 2 32 0 187 279 123 57 chr11 39942656 39942778 -108840694 + MIR SINE MIR 20 149 -113 520 305 21 42 chr11 39942891 39943081 -108840391 + LTR16A1 LTR ERVL 269 454 -3 231 213 0 66 chr11 39943584 39943645 -108839827 + MIR SINE MIR 206 262 0 270 0 0 0 chr11 39944829 39944859 -108838613 + (CA)n Simple_repeat Simple_repeat 2 31 0 448 156 52 12 chr11 39944908 39945081 -108838391 + (TA)n Simple_repeat Simple_repeat 1 180 0 396 173 56 25 chr11 39945111 39945273 -108838199 + (TATAA)n Simple_repeat Simple_repeat 4 170 0 248 161 35 35 chr11 39945403 39945490 -108837982 + (TATAA)n Simple_repeat Simple_repeat 5 91 0 256 62 124 8 chr11 39945501 39945630 -108837842 + (TA)n Simple_repeat Simple_repeat 1 144 0 198 333 60 26 chr11 39945836 39945953 -108837519 - L2 LINE L2 -22 3291 3171 2260 245 32 20 chr11 39946030 39946679 -108836793 + L1MB7 LINE L1 5474 6130 -54 358 289 39 0 chr11 39946694 39946798 -108836674 - MLT1G1 LTR MaLR -61 534 427 240 305 191 43 chr11 39946859 39947000 -108836472 - MLT1G1 LTR MaLR -298 257 96 2080 171 13 0 chr11 39947001 39947380 -108836092 + L1MB1 LINE L1 5778 6161 -7 184 314 20 69 chr11 39947433 39947535 -108835937 - L2 LINE L2 -42 3271 3175 270 0 0 0 chr11 39947724 39947754 -108835718 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 937 156 78 22 chr11 39947754 39947933 -108835539 - AluSg/x SINE Alu -28 284 96 319 36 455 0 chr11 39948457 39948512 -108834960 - MADE1 DNA Mariner 0 80 1 222 362 11 21 chr11 39949538 39949632 -108833840 - L2 LINE L2 -29 3284 3192 1364 273 68 47 chr11 39951124 39951637 -108831835 + MLT1E LTR MaLR 70 593 0 24 32 0 0 chr11 39952606 39952637 -108830835 + AT_rich Low_complexity Low_complexity 1 31 0 730 308 53 4 chr11 39952657 39952904 -108830568 + MIR SINE MIR 2 260 -2 198 71 0 0 chr11 39955757 39955785 -108827687 + (TC)n Simple_repeat Simple_repeat 1 28 0 550 269 48 44 chr11 39956579 39956806 -108826666 + L2 LINE L2 2808 3035 -278 345 336 67 0 chr11 39956848 39956967 -108826505 + L2 LINE L2 3169 3295 -18 32 57 0 0 chr11 39958189 39958242 -108825230 + AT_rich Low_complexity Low_complexity 1 53 0 1589 209 3 7 chr11 39958367 39958663 -108824809 - AluJb SINE Alu -17 295 1 849 249 150 19 chr11 39958756 39959242 -108824230 + MER114 LTR ERV 39 588 -60 1097 289 92 57 chr11 39959695 39960270 -108823202 - MLT1G1 LTR MaLR 0 595 1 1932 128 90 29 chr11 39961357 39961700 -108821772 + THE1B LTR MaLR 1 364 0 10836 111 23 0 chr11 39961700 39963244 -108820228 + THE1B-int LTR MaLR 1 1580 0 1884 142 74 42 chr11 39963244 39963597 -108819875 + THE1B LTR MaLR 1 364 0 523 329 65 10 chr11 39964244 39964645 -108818827 + L1ME4a LINE L1 5512 5934 -187 335 22 0 22 chr11 39964657 39964702 -108818770 + (CA)n Simple_repeat Simple_repeat 2 45 0 12841 237 29 23 chr11 39965273 39967641 -108815831 + L1PA16 LINE L1 2181 4532 -3072 7506 38 12 0 chr11 39967641 39968527 -108814945 + MER11D LTR ERVK 1 897 0 12841 237 29 23 chr11 39968527 39969754 -108813718 + L1PA16 LINE L1 4532 5750 -1854 1836 150 55 17 chr11 39969754 39970115 -108813357 - THE1C LTR MaLR 0 375 1 12841 237 29 23 chr11 39970115 39971971 -108811501 + L1PA16 LINE L1 5750 7604 0 1904 295 35 25 chr11 39972250 39973114 -108810358 - L1MEc LINE L1 -5475 921 50 290 169 96 60 chr11 39974772 39974855 -108808617 - L2 LINE L2 -69 3244 3159 268 191 0 0 chr11 39974862 39974909 -108808563 + AluJo SINE Alu 1 47 -256 1994 132 72 26 chr11 39974909 39975257 -108808215 - THE1B LTR MaLR 0 364 1 11342 101 16 0 chr11 39975257 39976812 -108806660 - THE1B-int LTR MaLR 0 1580 1 1971 149 55 23 chr11 39976815 39977163 -108806309 - THE1B LTR MaLR -3 361 3 1530 174 4 26 chr11 39977164 39977429 -108806043 + AluJo SINE Alu 42 300 -12 185 339 85 79 chr11 39977644 39977833 -108805639 - L2 LINE L2 -411 2903 2714 2380 157 38 0 chr11 39977847 39978267 -108805205 - L1MB3 LINE L1 0 6183 5748 747 109 0 9 chr11 39978267 39978377 -108805095 - AluSg/x SINE Alu -38 274 166 7339 40 1 1 chr11 39978377 39979995 -108803477 + L1PA4 LINE L1 4535 6153 -2 588 187 0 8 chr11 39979996 39980119 -108803353 + L1M3 LINE L1 5652 5773 -410 1103 126 0 0 chr11 39980120 39980271 -108803201 + AluSq/x SINE Alu 1 151 -162 764 314 167 16 chr11 39980286 39980860 -108802612 - L2 LINE L2 -609 2705 2045 1477 302 70 4 chr11 39981123 39981637 -108801835 + MLT1H LTR MaLR 2 549 0 279 389 36 6 chr11 39981812 39981979 -108801493 + MIR3 SINE MIR 30 201 -7 350 271 128 33 chr11 39983842 39984115 -108799357 + L1ME4a LINE L1 5816 6114 -7 429 295 67 58 chr11 39984756 39984980 -108798492 + MIR SINE MIR 2 227 -35 29 28 0 0 chr11 39985238 39985274 -108798198 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39986224 39986245 -108797227 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr11 39987238 39987274 -108796198 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39987401 39987422 -108796050 + AT_rich Low_complexity Low_complexity 1 21 0 328 319 66 16 chr11 39988031 39988213 -108795259 - MIR SINE MIR -6 256 66 772 234 33 5 chr11 39988454 39988638 -108794834 + MER5A DNA MER1_type 1 189 0 195 287 0 81 chr11 39989441 39989528 -108793944 - L2 LINE L2 -9 3304 3225 580 229 0 0 chr11 39989528 39989637 -108793835 + FLAM_A SINE Alu 1 109 -33 24 32 0 0 chr11 39989644 39989675 -108793797 + AT_rich Low_complexity Low_complexity 1 31 0 264 306 14 0 chr11 39989876 39989948 -108793524 - L2 LINE L2 -254 3018 2946 2354 191 12 5 chr11 39990850 39991273 -108792199 - MSTB LTR MaLR 0 426 1 25 51 0 0 chr11 39991473 39991512 -108791960 + AT_rich Low_complexity Low_complexity 1 39 0 587 241 0 36 chr11 39991766 39991903 -108791569 + FLAM_A SINE Alu 1 132 -1 22 35 0 0 chr11 39993785 39993814 -108789658 + AT_rich Low_complexity Low_complexity 1 29 0 771 284 100 11 chr11 39993929 39994278 -108789194 + LTR16C LTR ERVL 112 491 0 230 342 89 37 chr11 39994305 39994495 -108788977 - MIR SINE MIR -13 249 50 1939 161 0 37 chr11 39994704 39995026 -108788446 + AluJo SINE Alu 1 310 -2 349 230 6 6 chr11 39995143 39995317 -108788155 + (TG)n Simple_repeat Simple_repeat 1 174 0 315 326 65 7 chr11 39996029 39996167 -108787305 + MIR SINE MIR 102 247 -15 23 0 0 0 chr11 39997216 39997239 -108786233 + AT_rich Low_complexity Low_complexity 1 23 0 1759 182 38 9 chr11 39997326 39997672 -108785800 - MLT1A1 LTR MaLR -2 363 8 954 215 26 4 chr11 39997673 39997906 -108785566 - MLT1A1-int LTR MaLR -13 1722 1485 418 271 129 12 chr11 39997907 39998077 -108785395 + LTR1 LTR ERV1 28 217 -568 459 205 84 11 chr11 39998131 39998271 -108785201 + LTR28 LTR ERV1 345 423 -11 281 209 39 101 chr11 39998353 39998482 -108784990 + LTR28 LTR ERV1 900 1020 0 503 209 194 0 chr11 39998482 39998621 -108784851 - MLT1A1-int LTR MaLR -247 1488 1323 3842 239 83 29 chr11 39998662 39999815 -108783657 - MLT1A1-int LTR MaLR -511 1224 9 1515 215 13 48 chr11 39999824 40000200 -108783272 - MLT1A1 LTR MaLR -2 363 1 209 216 108 54 chr11 40000424 40000498 -108782974 - L2 LINE L2 -8 3305 3228 180 125 0 0 chr11 40001334 40001366 -108782106 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 536 219 49 55 chr11 40001567 40001596 -108781876 - MER20 DNA MER1_type -56 163 135 2997 150 19 21 chr11 40001596 40002162 -108781310 - MER34B LTR ERV1 0 565 1 536 219 49 55 chr11 40002162 40002296 -108781176 - MER20 DNA MER1_type -84 135 1 1483 170 18 98 chr11 40002401 40002737 -108780735 + AluJo SINE Alu 1 309 -3 3695 166 9 0 chr11 40002750 40003399 -108780073 - MER72 LTR ERV1 -67 655 1 234 0 0 0 chr11 40003816 40003842 -108779630 + (CA)n Simple_repeat Simple_repeat 1 26 0 1700 139 75 42 chr11 40004345 40004705 -108778767 + THE1C LTR MaLR 1 372 -3 196 333 113 27 chr11 40005095 40005245 -108778227 - MIR3 SINE MIR -9 199 37 1451 196 108 23 chr11 40005369 40005975 -108777497 + MER39 LTR ERV1 1 707 0 699 165 8 15 chr11 40007085 40007218 -108776254 - FLAM_C SINE Alu -1 132 1 234 267 17 17 chr11 40007839 40007899 -108775573 + MLT1I LTR MaLR 206 265 -144 1344 177 28 28 chr11 40007992 40008275 -108775197 + MER49 LTR ERV1 1 283 -640 1332 174 34 133 chr11 40008279 40008585 -108774887 + MER4E LTR ERV1 72 328 -451 862 156 0 15 chr11 40008585 40008720 -108774752 + AluJo SINE Alu 1 133 -169 1332 174 34 133 chr11 40008720 40008828 -108774644 + MER4E LTR ERV1 328 445 -334 950 202 0 0 chr11 40008834 40009002 -108774470 - AluJb SINE Alu -13 299 132 696 208 50 19 chr11 40009105 40009264 -108774208 + AluJo SINE Alu 132 295 -17 1474 272 29 26 chr11 40009291 40009941 -108773531 + HAL1b LINE L1 297 948 -400 253 253 258 13 chr11 40009998 40010223 -108773249 + HAL1b LINE L1 1062 1341 -7 296 250 161 6 chr11 40010932 40011100 -108772372 - Tigger8 DNA MER2_type -267 399 206 1305 200 26 56 chr11 40011174 40011479 -108771993 + AluJo SINE Alu 2 297 -5 31 26 0 0 chr11 40012267 40012305 -108771167 + AT_rich Low_complexity Low_complexity 1 38 0 686 69 0 0 chr11 40012426 40012513 -108770959 + AluY SINE Alu 215 301 -10 614 279 27 0 chr11 40012544 40012691 -108770781 + MIR SINE MIR 112 262 0 3773 168 26 11 chr11 40012755 40013471 -108770001 + MER50 LTR ERV1 1 727 -7 424 242 23 31 chr11 40013478 40013606 -108769866 - MIR SINE MIR -49 213 87 1924 174 92 15 chr11 40013628 40014233 -108769239 + LTR8A LTR ERV1 5 727 0 541 252 71 8 chr11 40014236 40014363 -108769109 + MER5B DNA MER1_type 4 138 -40 613 223 87 50 chr11 40014905 40015137 -108768335 + MER39 LTR ERV1 157 379 -328 2425 133 46 12 chr11 40015137 40015551 -108767921 - MSTA LTR MaLR 0 428 1 613 223 87 50 chr11 40015551 40015608 -108767864 + MER39 LTR ERV1 379 630 -77 24 77 0 0 chr11 40015927 40015979 -108767493 + AT_rich Low_complexity Low_complexity 1 52 0 381 134 103 41 chr11 40017393 40017490 -108765982 + MER53 DNA DNA 81 183 -6 539 230 149 0 chr11 40017870 40018020 -108765452 + MER5A DNA MER1_type 4 179 -10 756 281 163 25 chr11 40019323 40019764 -108763708 + MLT1L LTR MaLR 112 613 -2 217 227 0 0 chr11 40021503 40021547 -108761925 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 280 282 10 153 chr11 40021646 40021729 -108761743 + MIR SINE MIR 90 129 -133 1462 164 119 8 chr11 40021729 40021997 -108761475 - AluJb SINE Alu -10 302 5 280 282 10 153 chr11 40021997 40022115 -108761357 + MIR SINE MIR 129 262 0 9141 180 60 13 chr11 40022183 40023860 -108759612 + MER52A LTR ERV1 1 1755 0 1280 94 19 0 chr11 40025150 40025309 -108758163 + AluSc SINE Alu 1 162 -147 21 36 0 0 chr11 40025530 40025558 -108757914 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr11 40025584 40025635 -108757837 + AT_rich Low_complexity Low_complexity 1 51 0 26 101 0 0 chr11 40025780 40025869 -108757603 + AT_rich Low_complexity Low_complexity 1 89 0 2322 159 26 35 chr11 40026402 40026854 -108756618 + MER44D DNA MER2_type 8 455 -250 10295 178 8 20 chr11 40026866 40028772 -108754700 + L1MA3 LINE L1 72 1954 -5611 2293 120 14 0 chr11 40028791 40029142 -108754330 + THE1B LTR MaLR 9 364 0 9235 112 62 37 chr11 40029142 40030504 -108752968 + THE1B-int LTR MaLR 1 1408 -172 2345 105 0 3 chr11 40030504 40030810 -108752662 - AluY SINE Alu -6 305 1 9235 112 62 37 chr11 40030810 40030988 -108752484 + THE1B-int LTR MaLR 1408 1580 0 2499 122 6 0 chr11 40030988 40031350 -108752122 + THE1B LTR MaLR 1 364 0 11841 174 27 25 chr11 40031352 40035915 -108747557 + L1MA3 LINE L1 1980 6555 -1010 216 0 0 0 chr11 40035915 40035939 -108747533 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 11841 174 27 25 chr11 40035939 40036091 -108747381 + L1MA3 LINE L1 6555 6705 -860 21539 116 7 49 chr11 40036101 40042611 -108740861 + L1PA7 LINE L1 12 6153 -1 5088 128 14 21 chr11 40042598 40043519 -108739953 + L1MA3 LINE L1 6708 7622 -102 * 923 224 76 16 chr11 40043530 40043780 -108739692 + MER44D DNA MER2_type 469 605 0 277 315 22 0 chr11 40044578 40044670 -108738802 - MIR3 SINE MIR -5 203 110 2253 77 40 0 chr11 40045061 40045360 -108738112 - AluY SINE Alu 0 311 1 343 307 214 0 chr11 40045625 40045739 -108737733 - MIR SINE MIR -8 254 166 2303 90 7 0 chr11 40045739 40046040 -108737432 + AluY SINE Alu 6 308 -3 343 307 214 0 chr11 40046040 40046117 -108737355 - MIR SINE MIR -96 166 22 2423 190 30 13 chr11 40046165 40046703 -108736769 + MER34C LTR ERV1 37 583 -2 24 67 0 0 chr11 40046873 40046918 -108736554 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr11 40047152 40047173 -108736299 + (A)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chr11 40048050 40048077 -108735395 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1398 243 96 30 chr11 40048080 40048579 -108734893 + MLT1H LTR MaLR 18 549 0 2336 106 3 0 chr11 40050369 40050681 -108732791 + AluSp SINE Alu 1 313 0 2013 183 69 2 chr11 40051028 40051433 -108732039 + MSTB1 LTR MaLR 1 432 0 6379 224 67 11 chr11 40051433 40052997 -108730475 + MSTB1-int LTR MaLR 1 1651 0 1624 168 94 41 chr11 40053011 40053405 -108730067 + MSTB1 LTR MaLR 18 432 0 319 227 68 23 chr11 40055411 40055499 -108727973 - MIR SINE MIR -55 207 116 240 279 0 13 chr11 40055947 40056026 -108727446 + MER116 DNA Mariner 2 79 -1 2168 206 35 62 chr11 40056890 40057129 -108726343 + MLT2B3 LTR ERVL 1 245 -309 495 0 0 0 chr11 40057129 40057184 -108726288 + (TC)n Simple_repeat Simple_repeat 2 56 0 2168 206 35 62 chr11 40057184 40057513 -108725959 + MLT2B3 LTR ERVL 245 554 0 1985 166 119 29 chr11 40057513 40057959 -108725513 - MLT1D LTR MaLR -19 486 1 315 350 96 19 chr11 40058017 40058174 -108725298 - MIR3 SINE MIR 0 208 40 359 182 0 23 chr11 40058521 40058609 -108724863 + GA-rich Low_complexity Low_complexity 6 91 0 692 315 55 52 chr11 40058790 40059285 -108724187 - MLT1L LTR MaLR 0 615 120 531 124 8 16 chr11 40059524 40059653 -108723819 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 295 317 32 0 chr11 40059819 40059942 -108723530 - MER94 DNA DNA -3 131 5 1573 211 10 3 chr11 40059996 40060295 -108723177 - AluJo SINE Alu -11 301 1 376 241 0 54 chr11 40060305 40060417 -108723055 - MLT1K LTR MaLR -16 572 467 284 346 39 28 chr11 40060505 40060687 -108722785 - MLT1K LTR MaLR -263 325 142 343 286 155 56 chr11 40061343 40061647 -108721825 - LTR52 LTR ERVL -70 351 18 304 341 85 6 chr11 40061666 40061842 -108721630 + MIR SINE MIR 47 236 -26 1646 158 24 24 chr11 40061986 40062041 -108721431 - MER2 DNA MER2_type -5 340 286 2308 110 0 0 chr11 40062041 40062341 -108721131 - AluSq SINE Alu -13 300 1 1646 158 24 24 chr11 40062341 40062615 -108720857 - MER2 DNA MER2_type -58 287 11 1191 195 105 78 chr11 40062938 40063461 -108720011 + MER67C LTR ERV1 15 509 -5 303 28 0 0 chr11 40063569 40063605 -108719867 + (TG)n Simple_repeat Simple_repeat 1 36 0 867 183 0 0 chr11 40063877 40064014 -108719458 + FRAM SINE Alu 1 137 -39 21 0 0 0 chr11 40064014 40064035 -108719437 + AT_rich Low_complexity Low_complexity 1 21 0 248 108 0 0 chr11 40064035 40064072 -108719400 - Alu SINE Alu -16 286 250 379 230 60 20 chr11 40064250 40064350 -108719122 - L1MC4 LINE L1 -1325 6717 6614 201 219 12 24 chr11 40065050 40065132 -108718340 + T-rich Low_complexity Low_complexity 4 84 0 233 313 12 0 chr11 40065187 40065267 -108718205 + MER110A LTR ERV1 388 468 0 2142 168 17 26 chr11 40065567 40065984 -108717488 - MER61B LTR ERV1 0 425 13 979 183 18 49 chr11 40066044 40066268 -108717204 - MER50 LTR ERV1 0 734 518 4923 49 0 0 chr11 40066413 40067004 -108716468 + LTR10C LTR ERV1 1 591 0 371 241 135 7 chr11 40067131 40067272 -108716200 - MER50 LTR ERV1 -566 168 10 1117 121 68 5 chr11 40068426 40068633 -108714839 - MER4D LTR ERV1 0 903 684 421 245 112 47 chr11 40068796 40069029 -108714443 + L2 LINE L2 2958 3205 -108 2275 113 0 10 chr11 40071825 40072134 -108711338 - AluSx SINE Alu -6 306 1 2063 148 7 0 chr11 40072134 40072437 -108711035 - AluJb SINE Alu -5 307 3 957 125 36 42 chr11 40072479 40072647 -108710825 - AluSg/x SINE Alu -20 292 126 775 178 0 15 chr11 40072841 40072976 -108710496 - FLAM_C SINE Alu 0 133 1 350 294 18 18 chr11 40073437 40073546 -108709926 + CT-rich Low_complexity Low_complexity 6 114 0 442 195 34 8 chr11 40073937 40074055 -108709417 + MER53 DNA DNA 3 123 -66 219 333 0 0 chr11 40074124 40074196 -108709276 + (TA)n Simple_repeat Simple_repeat 1 72 0 267 175 0 0 chr11 40074196 40074253 -108709219 + MER53 DNA DNA 129 185 -4 40306 37 25 1 chr11 40074944 40080949 -108702523 - L1PA2 LINE L1 -2 6153 1 1413 246 35 3 chr11 40080961 40081299 -108702173 + MLT2D LTR ERVL 18 366 -48 303 49 0 0 chr11 40081302 40081343 -108702129 + (TC)n Simple_repeat Simple_repeat 2 42 0 410 49 0 0 chr11 40081373 40081438 -108702034 + MLT2C2 LTR ERVL 416 464 0 387 0 0 0 chr11 40081469 40081512 -108701960 + (TA)n Simple_repeat Simple_repeat 2 44 0 1726 163 37 28 chr11 40081612 40081938 -108701534 - MER1B DNA MER1_type 0 339 11 195 253 0 96 chr11 40082304 40082387 -108701085 + MER5A DNA MER1_type 29 103 -86 202 424 8 0 chr11 40082537 40082669 -108700803 - L2 LINE L2 -492 2822 2690 21 36 0 0 chr11 40082780 40082808 -108700664 + AT_rich Low_complexity Low_complexity 1 28 0 1028 199 43 8 chr11 40082996 40083252 -108700220 - MER31A LTR ERV1 0 485 221 323 300 127 0 chr11 40085473 40085583 -108697889 - L2 LINE L2 0 3272 3149 436 209 82 37 chr11 40085732 40085866 -108697606 - MER3 DNA MER1_type -68 141 2 444 255 60 72 chr11 40086676 40086927 -108696545 + L1ME LINE L1 539 786 -5284 984 246 73 24 chr11 40086934 40087334 -108696138 + L1ME2 LINE L1 5743 6333 -1 2077 60 56 3 chr11 40087439 40087724 -108695748 - AluY SINE Alu -11 300 1 409 362 69 11 chr11 40087853 40088041 -108695431 - MIR SINE MIR -48 214 16 198 0 0 0 chr11 40088127 40088149 -108695323 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 40088469 40088493 -108694979 + AT_rich Low_complexity Low_complexity 1 24 0 205 296 104 17 chr11 40089002 40089117 -108694355 + MIR SINE MIR 81 205 -57 184 333 49 60 chr11 40089501 40089684 -108693788 - L2 LINE L2 -4 3309 3129 437 258 21 0 chr11 40089728 40089825 -108693647 - MER45A DNA AcHobo -1 177 79 184 286 57 14 chr11 40089890 40089960 -108693512 - L2 LINE L2 -220 3052 2980 285 281 223 14 chr11 40090234 40090373 -108693099 + MIR3 SINE MIR 27 194 -14 320 206 14 14 chr11 40090915 40090988 -108692484 - MLT1I LTR MaLR -14 395 323 246 362 9 0 chr11 40091174 40091279 -108692193 - MLT1I LTR MaLR -256 153 48 213 363 70 56 chr11 40092200 40092415 -108691057 - L2 LINE L2 -5 3267 3050 293 367 109 34 chr11 40092499 40093120 -108690352 - L2 LINE L2 -337 2977 2310 33 56 0 0 chr11 40093251 40093305 -108690167 + AT_rich Low_complexity Low_complexity 1 54 0 468 302 62 22 chr11 40094076 40094255 -108689217 - MLT1H LTR MaLR 0 549 364 27 0 0 0 chr11 40094510 40094537 -108688935 + AT_rich Low_complexity Low_complexity 1 27 0 241 316 191 7 chr11 40096477 40096613 -108686859 - MIR SINE MIR 0 262 102 180 0 0 0 chr11 40096627 40096647 -108686825 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 222 299 73 66 chr11 40096741 40096878 -108686594 + L3 LINE CR1 1416 1553 -24 23 0 0 0 chr11 40097514 40097537 -108685935 + AT_rich Low_complexity Low_complexity 1 23 0 2196 99 0 13 chr11 40097588 40097923 -108685549 - AluSg SINE Alu 0 310 1 25 0 0 0 chr11 40098042 40098067 -108685405 + AT_rich Low_complexity Low_complexity 1 25 0 266 235 19 148 chr11 40098133 40098295 -108685177 - L2 LINE L2 -73 3240 3100 709 294 18 18 chr11 40098299 40098527 -108684945 - L2 LINE L2 -823 2491 2264 974 333 15 3 chr11 40098551 40098890 -108684582 - LTR16C LTR ERVL -18 473 131 199 256 49 12 chr11 40099427 40099509 -108683963 - L2 LINE L2 -1604 1710 1626 194 298 94 23 chr11 40099668 40099839 -108683633 - L2 LINE L2 -2 3311 3129 22 0 0 0 chr11 40100157 40100179 -108683293 + AT_rich Low_complexity Low_complexity 1 22 0 255 31 0 0 chr11 40100649 40100681 -108682791 + (TG)n Simple_repeat Simple_repeat 2 33 0 1761 202 34 11 chr11 40100881 40101232 -108682240 - MLT1A1 LTR MaLR 0 365 7 1927 285 49 11 chr11 40101371 40102153 -108681319 - L1M4 LINE L1 -2020 4126 3316 31 104 0 0 chr11 40102627 40102742 -108680730 + AT_rich Low_complexity Low_complexity 1 115 0 223 286 63 0 chr11 40102842 40102905 -108680567 + L2 LINE L2 3205 3271 -1 2089 135 59 9 chr11 40104174 40104514 -108678958 - THE1B LTR MaLR -7 357 1 705 329 45 30 chr11 40104623 40104957 -108678515 - LTR16A LTR ERVL 0 450 112 1517 190 72 0 chr11 40105159 40105464 -108678008 - L1PB4 LINE L1 0 6156 5830 * 2978 227 6 26 chr11 40105455 40106195 -108677277 + L1 LINE L1 4644 5367 -788 645 241 91 20 chr11 40106672 40106871 -108676601 + MLT1E LTR MaLR 9 221 -372 316 294 0 0 chr11 40106902 40106970 -108676502 - MER2 DNA MER2_type -277 68 1 1244 212 53 7 chr11 40106978 40107280 -108676192 - L1MCa LINE L1 -1880 4546 4231 2409 121 17 40 chr11 40107353 40107758 -108675714 + MER75 DNA T2_type 119 514 0 5406 261 30 15 chr11 40107761 40109572 -108673900 - L1MCa LINE L1 -2196 4230 2392 3728 241 20 25 chr11 40109576 40109948 -108673524 + MER21B LTR ERV1 5 377 -486 2047 154 16 19 chr11 40109948 40110324 -108673148 + THE1C LTR MaLR 1 375 0 3728 241 20 25 chr11 40110324 40110784 -108672688 + MER21B LTR ERV1 377 833 -30 1549 157 75 0 chr11 40110812 40111130 -108672342 - L1MCa LINE L1 -4030 2396 2055 1159 213 126 68 chr11 40111133 40111210 -108672262 + MER4C LTR ERV1 1 72 -393 330 26 0 0 chr11 40111210 40111249 -108672223 + (CA)n Simple_repeat Simple_repeat 1 39 0 1159 213 126 68 chr11 40111249 40111754 -108671718 + MER4C LTR ERV1 72 457 -8 220 209 0 0 chr11 40111768 40111811 -108671661 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8130 186 105 9 chr11 40111814 40112453 -108671019 - L1MCa LINE L1 -4366 2060 1483 603 74 0 0 chr11 40112453 40112534 -108670938 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 8130 186 105 9 chr11 40112534 40112556 -108670916 - L1MCa LINE L1 -4943 1483 1465 552 113 0 0 chr11 40112556 40112636 -108670836 + MADE1 DNA Mariner 1 80 0 8130 186 105 9 chr11 40112636 40113828 -108669644 - L1MCa LINE L1 -4961 1465 29 581 343 58 36 chr11 40113830 40114163 -108669309 - HAL1 LINE L1 -2079 428 82 1972 110 3 7 chr11 40114163 40114478 -108668994 + AluSx SINE Alu 1 314 0 581 343 58 36 chr11 40114478 40114554 -108668918 - HAL1 LINE L1 -2425 82 9 212 260 40 0 chr11 40114582 40114632 -108668840 - L3b LINE CR1 -255 1328 1277 2338 70 3 3 chr11 40115949 40116249 -108667223 - AluY SINE Alu -11 300 1 624 332 78 56 chr11 40117018 40117598 -108665874 - L2 LINE L2 0 3313 2717 344 241 12 176 chr11 40117604 40117928 -108665544 - L2 LINE L2 -5 3308 3038 470 338 73 0 chr11 40118972 40119123 -108664349 + MER91A DNA MER1_type 35 196 0 615 318 76 8 chr11 40119149 40119385 -108664087 - MIR SINE MIR -4 258 7 223 255 0 0 chr11 40120497 40120548 -108662924 - L2 LINE L2 0 3313 3263 1732 292 44 81 chr11 40120880 40122202 -108661270 + L2 LINE L2 2024 3290 -23 13782 138 33 14 chr11 40122203 40122706 -108660766 - Tigger1 DNA MER2_type 0 2418 1926 2038 128 3 17 chr11 40122706 40123002 -108660470 - AluSx SINE Alu -20 292 1 13782 138 33 14 chr11 40123002 40124871 -108658601 - Tigger1 DNA MER2_type -492 1926 1 210 118 0 0 chr11 40124879 40124913 -108658559 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 322 384 59 8 chr11 40124984 40125239 -108658233 - L2 LINE L2 -715 2599 2332 1332 177 105 0 chr11 40127733 40128076 -108655396 - L1MB1 LINE L1 -60 6108 5705 729 212 36 0 chr11 40128076 40128241 -108655231 - MER39 LTR ERV1 0 707 537 3231 114 37 2 chr11 40128246 40128737 -108654735 - L1PA11 LINE L1 -1 6173 5666 243 242 43 97 chr11 40128837 40129097 -108654375 - MER39 LTR ERV1 -203 504 219 * 274 222 101 71 chr11 40129071 40129170 -108654302 - LTR48B LTR ERV1 -539 105 4 2232 189 12 27 chr11 40129173 40129655 -108653817 - L1MB1 LINE L1 -460 5708 5238 2355 84 68 11 chr11 40129655 40130010 -108653462 + THE1C LTR MaLR 1 375 0 2232 189 12 27 chr11 40130010 40130105 -108653367 - L1MB1 LINE L1 -930 5238 5143 718 237 41 8 chr11 40130106 40130292 -108653180 + MLT1A1 LTR MaLR 202 365 0 2623 210 50 10 chr11 40130292 40130969 -108652503 - L1MB1 LINE L1 -1581 4565 3862 233 191 21 0 chr11 40130970 40131014 -108652458 - MLT2B1 LTR ERVL 0 515 471 1530 134 40 0 chr11 40131014 40131261 -108652211 - Tigger2 DNA MER2_type 0 2718 2462 4056 172 12 21 chr11 40131311 40132073 -108651399 - Tigger2 DNA MER2_type -1961 757 3 229 286 0 0 chr11 40132112 40132161 -108651311 + Tigger3(Golem) DNA MER2_type 1 49 -2980 231 234 0 21 chr11 40132284 40132331 -108651141 + Tigger3(Golem) DNA MER2_type 2983 3028 -1 535 246 0 0 chr11 40132359 40132473 -108650999 - MLT2B1 LTR ERVL -71 444 331 * 731 145 0 30 chr11 40132471 40132602 -108650870 + Tigger2 DNA MER2_type 253 379 -2339 1698 168 26 41 chr11 40132604 40132870 -108650602 - MLT2B1 LTR ERVL -183 337 76 2031 130 7 10 chr11 40132870 40133163 -108650309 - AluSx SINE Alu -20 292 1 1698 168 26 41 chr11 40133163 40133236 -108650236 - MLT2B1 LTR ERVL -444 76 3 2103 244 75 8 chr11 40133236 40133986 -108649486 - L1MB1 LINE L1 -2279 3867 3068 4126 77 8 65 chr11 40134695 40135786 -108647686 - MER11A LTR ERVK 0 1266 3 2136 190 41 24 chr11 40135789 40136253 -108647219 + LTR38 LTR ERV1 66 537 -19 1843 170 7 0 chr11 40136755 40137049 -108646423 - AluJb SINE Alu -16 296 1 1881 135 120 0 chr11 40137085 40137410 -108646062 - THE1B LTR MaLR 0 364 1 10942 116 11 0 chr11 40137413 40138496 -108644976 - THE1B-int LTR MaLR -3 1577 469 853 62 0 0 chr11 40138496 40138608 -108644864 - L1PA5 LINE L1 0 6154 6043 10942 116 11 0 chr11 40138608 40139083 -108644389 - THE1B-int LTR MaLR -1111 469 1 1622 159 132 15 chr11 40139083 40139409 -108644063 - THE1B LTR MaLR 0 364 1 1453 251 25 59 chr11 40139444 40139918 -108643554 + MLT1C LTR MaLR 1 458 -9 192 125 0 0 chr11 40140683 40140715 -108642757 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 179 18 0 chr11 40141252 40141308 -108642164 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr11 40141537 40141558 -108641914 + AT_rich Low_complexity Low_complexity 1 21 0 206 287 20 10 chr11 40141744 40141845 -108641627 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 * 247 188 31 16 chr11 40141799 40141863 -108641609 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 476 221 50 0 chr11 40141874 40142014 -108641458 - L1MB1 LINE L1 -3160 2986 2840 1304 254 25 78 chr11 40142016 40142449 -108641023 + MER77 LTR ERV1 186 595 -10 2252 284 52 42 chr11 40142556 40143378 -108640094 - L1MDa LINE L1 -5542 998 24 822 289 80 34 chr11 40143397 40143598 -108639874 - L1MEc LINE L1 -4331 2065 1875 1348 221 26 13 chr11 40143598 40143638 -108639834 - AluJb SINE Alu 0 312 274 414 0 0 0 chr11 40143638 40143684 -108639788 + (TC)n Simple_repeat Simple_repeat 2 47 0 1348 221 26 13 chr11 40143684 40143951 -108639521 - AluJb SINE Alu -38 274 1 822 289 80 34 chr11 40143951 40144937 -108638535 - L1MEc LINE L1 -4521 1875 783 5206 168 27 67 chr11 40145024 40145726 -108637746 - L1PA15 LINE L1 0 6165 5437 1997 138 3 0 chr11 40145726 40146009 -108637463 - AluSx SINE Alu -25 287 4 5206 168 27 67 chr11 40146009 40147411 -108636061 - L1PA15 LINE L1 -728 5437 4156 535 341 69 26 chr11 40147600 40148022 -108635450 - L1MEc LINE L1 -5918 478 39 897 174 90 0 chr11 40150126 40150281 -108633191 - AluJb SINE Alu -14 298 130 1142 272 80 31 chr11 40151024 40151744 -108631728 - L1ME3A LINE L1 -223 6016 5262 1318 298 53 24 chr11 40152109 40152959 -108630513 - L1ME3A LINE L1 -1305 4910 4036 358 304 114 5 chr11 40153021 40153222 -108630250 - L1ME3A LINE L1 -4101 2295 2073 2748 16 0 0 chr11 40153232 40153549 -108629923 - L1PA3 LINE L1 0 6155 5839 686 330 83 18 chr11 40154016 40154413 -108629059 - L2 LINE L2 -692 2622 2200 5058 142 65 61 chr11 40154954 40156088 -108627384 - Tigger3b DNA MER2_type -6 1225 1 512 328 127 4 chr11 40157903 40158132 -108625340 - MIR SINE MIR -4 258 2 3252 338 99 11 chr11 40158527 40160056 -108623416 + L2 LINE L2 30 1693 -1621 300 260 31 21 chr11 40160066 40160162 -108623310 + L1MC4 LINE L1 6607 6703 -1339 209 186 14 0 chr11 40160175 40160245 -108623227 + (TA)n Simple_repeat Simple_repeat 1 71 0 399 41 0 0 chr11 40160248 40160297 -108623175 + (CA)n Simple_repeat Simple_repeat 2 50 0 1155 316 28 30 chr11 40160302 40160949 -108622523 + L2 LINE L2 2662 3309 -4 393 338 43 30 chr11 40162112 40162414 -108621058 + MLT1I LTR MaLR 98 403 -6 234 281 30 52 chr11 40162439 40162574 -108620898 - L2 LINE L2 -243 3029 2898 258 360 118 22 chr11 40162665 40162937 -108620535 - L2 LINE L2 -463 2851 2554 864 277 42 0 chr11 40163414 40163627 -108619845 - MLT1A1 LTR MaLR 0 365 144 257 0 30 0 chr11 40163631 40163664 -108619808 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4679 100 12 0 chr11 40163667 40164344 -108619128 - L1PA14 LINE L1 -9 6152 5468 852 205 0 0 chr11 40164344 40164500 -108618972 - MLT1A1 LTR MaLR -209 156 1 180 244 0 0 chr11 40164894 40164935 -108618537 + L2 LINE L2 3273 3313 0 180 0 0 0 chr11 40167861 40167881 -108615591 + (CA)n Simple_repeat Simple_repeat 1 20 0 187 342 26 26 chr11 40168436 40168512 -108614960 - MIR3 SINE MIR -52 156 81 2597 100 11 5 chr11 40169378 40169749 -108613723 + THE1C LTR MaLR 1 373 -2 26 50 0 0 chr11 40171037 40171077 -108612395 + AT_rich Low_complexity Low_complexity 1 40 0 1706 221 11 3 chr11 40171484 40171846 -108611626 - MLT1A1 LTR MaLR 0 365 1 677 291 61 4 chr11 40172813 40173060 -108610412 - MIR SINE MIR 0 262 2 251 282 145 17 chr11 40173381 40173498 -108609974 - LTR33 LTR ERVL -153 368 237 617 259 24 24 chr11 40173524 40173690 -108609782 - LTR33 LTR ERVL -348 173 8 27 73 0 0 chr11 40174373 40174428 -108609044 + AT_rich Low_complexity Low_complexity 1 55 0 321 242 0 130 chr11 40175235 40175396 -108608076 - MIR SINE MIR -37 225 86 2286 52 0 55 chr11 40175995 40176305 -108607167 - AluY SINE Alu -18 293 1 346 189 25 15 chr11 40176331 40176439 -108607033 - MLT1I LTR MaLR -3 406 314 341 259 0 83 chr11 40176468 40176576 -108606896 - MLT1I LTR MaLR -310 99 1 312 216 136 0 chr11 40176576 40176664 -108606808 + MIR SINE MIR 142 241 -21 2158 149 15 0 chr11 40178287 40178629 -108604843 - MER7A DNA MER2_type 0 346 2 2287 128 6 6 chr11 40178790 40179135 -108604337 + THE1B LTR MaLR 3 347 -17 412 258 177 30 chr11 40179187 40179385 -108604087 + MIR SINE MIR 34 260 -2 490 275 25 0 chr11 40179405 40179525 -108603947 - MIR SINE MIR -65 197 75 262 318 139 29 chr11 40179709 40179882 -108603590 + MIR SINE MIR 65 256 -6 21 0 0 0 chr11 40180194 40180215 -108603257 + AT_rich Low_complexity Low_complexity 1 21 0 294 285 73 24 chr11 40180563 40180686 -108602786 - MIR SINE MIR -67 195 67 2648 107 31 13 chr11 40181257 40181642 -108601830 + MLT2A2 LTR ERVL 1 392 -61 198 0 0 0 chr11 40181643 40181665 -108601807 + (TC)n Simple_repeat Simple_repeat 2 23 0 253 90 33 90 chr11 40181665 40181787 -108601685 + (TA)n Simple_repeat Simple_repeat 1 115 0 311 333 0 0 chr11 40181788 40181878 -108601594 - L1MC4 LINE L1 -1339 6703 6614 * 329 258 0 43 chr11 40181812 40181905 -108601567 + L1MC4 LINE L1 6614 6702 -1340 304 333 0 0 chr11 40181904 40181994 -108601478 - L1MC4 LINE L1 -1339 6703 6614 * 297 197 0 0 chr11 40182001 40182062 -108601410 + (TA)n Simple_repeat Simple_repeat 2 62 0 244 210 16 0 chr11 40182065 40182127 -108601345 + L1MCa LINE L1 2006 2068 -4358 267 152 0 0 chr11 40182127 40182173 -108601299 + (TA)n Simple_repeat Simple_repeat 1 46 0 244 264 0 22 chr11 40182177 40182268 -108601204 + L1MC4 LINE L1 6615 6703 -1339 232 311 0 0 chr11 40182232 40182322 -108601150 - L1MC4 LINE L1 -1339 6703 6614 * 195 184 0 0 chr11 40182322 40182360 -108601112 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 323 264 0 22 chr11 40182361 40182452 -108601020 + L1MC4 LINE L1 6615 6703 -1339 456 161 0 0 chr11 40182452 40182533 -108600939 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 322 315 0 0 chr11 40182533 40182622 -108600850 + L1MC4 LINE L1 6615 6703 -1339 220 211 0 0 chr11 40182622 40182660 -108600812 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 312 282 47 0 chr11 40182660 40182745 -108600727 + L1MC4 LINE L1 6614 6702 -1340 255 275 0 29 chr11 40182746 40182886 -108600586 - L1MC4 LINE L1 -1339 6703 6614 231 167 0 37 chr11 40182872 40182926 -108600546 + L1MC4 LINE L1 6652 6703 -1339 * 535 237 7 26 chr11 40182926 40183197 -108600275 + (TATATG)n Simple_repeat Simple_repeat 1 266 0 252 244 0 51 chr11 40183221 40183299 -108600173 + L1MC4 LINE L1 6652 6725 -1317 7176 81 9 26 chr11 40183299 40184316 -108599156 + HERVL LTR ERVL 748 1747 -3907 3811 76 6 0 chr11 40184317 40184816 -108598656 + HERVL LTR ERVL 3038 3539 -2115 602 221 9 0 chr11 40185558 40185671 -108597801 + FLAM_A SINE Alu 2 115 -18 32 26 0 0 chr11 40185729 40185768 -108597704 + AT_rich Low_complexity Low_complexity 1 39 0 273 290 0 0 chr11 40185984 40186046 -108597426 + MIR SINE MIR 82 143 -65 359 177 34 17 chr11 40186063 40186238 -108597234 + (TA)n Simple_repeat Simple_repeat 1 178 0 297 215 21 0 chr11 40186274 40186418 -108597054 + (TA)n Simple_repeat Simple_repeat 2 148 0 197 302 35 12 chr11 40186423 40186509 -108596963 + MIR SINE MIR 162 249 -13 371 298 12 68 chr11 40187306 40187467 -108596005 - MER117 DNA MER1_type 0 197 46 482 280 23 34 chr11 40188092 40188267 -108595205 - MER69A DNA AcHobo -4 173 1 12001 133 10 22 chr11 40190245 40193116 -108590356 + L1PA7 LINE L1 9 2877 -3584 17072 104 4 8 chr11 40193116 40196189 -108587283 + L1PA7 LINE L1 3142 6221 -248 2154 122 7 0 chr11 40196189 40196493 -108586979 - AluSp SINE Alu -7 306 1 17072 104 4 8 chr11 40196493 40196740 -108586732 + L1PA7 LINE L1 6221 6467 -2 1975 155 0 0 chr11 40196958 40197249 -108586223 - AluSx SINE Alu -21 291 1 6074 228 50 22 chr11 40197620 40200526 -108582946 + L1PB3 LINE L1 3 2116 -4746 2393 76 0 0 chr11 40200526 40200840 -108582632 + L1PA8 LINE L1 5859 6172 0 6074 228 50 22 chr11 40200840 40202080 -108581392 + L1PB3 LINE L1 2116 3319 -3543 379 252 0 0 chr11 40202094 40202197 -108581275 + L1PB3 LINE L1 3618 3720 -3142 * 6509 205 20 16 chr11 40202186 40204179 -108579293 + L1PB3 LINE L1 4513 6510 -360 2405 123 0 0 chr11 40204289 40204646 -108578826 + L1PB3 LINE L1 6514 6870 0 373 432 33 8 chr11 40204741 40204984 -108578488 + L1MEc LINE L1 235 483 -5913 26 0 0 0 chr11 40205390 40205416 -108578056 + AT_rich Low_complexity Low_complexity 1 26 0 1584 289 71 49 chr11 40205417 40207331 -108576141 + L1MEc LINE L1 900 2818 -3397 1202 343 97 41 chr11 40207368 40208820 -108574652 + ERVL LTR ERVL 2737 4235 -1250 422 149 27 0 chr11 40209047 40209121 -108574351 - MLT1F LTR MaLR -3 539 464 558 299 27 32 chr11 40209125 40209312 -108574160 - MLT1F LTR MaLR -350 192 7 592 331 34 45 chr11 40209324 40209677 -108573795 + ERVL LTR ERVL 4546 4894 -870 874 261 55 41 chr11 40209682 40210027 -108573445 - L1M4 LINE L1 -1235 4911 4562 314 329 32 51 chr11 40210038 40210186 -108573286 - LTR16A LTR ERVL 0 450 301 2086 137 21 61 chr11 40210186 40210565 -108572907 - THE1B LTR MaLR 0 364 1 10169 118 12 35 chr11 40210565 40212182 -108571290 - THE1B-int LTR MaLR 0 1580 1 2272 132 28 8 chr11 40212182 40212539 -108570933 - THE1B LTR MaLR 0 364 1 314 329 32 51 chr11 40212539 40212604 -108570868 - LTR16A LTR ERVL -146 304 239 187 290 90 40 chr11 40213356 40213456 -108570016 + L2 LINE L2 2947 3051 -221 1031 227 32 0 chr11 40214488 40214708 -108568764 + Charlie4 DNA MER1_type 64 290 -1671 3485 42 2 0 chr11 40214708 40215137 -108568335 - L1PA5 LINE L1 0 6154 5725 1955 106 0 32 chr11 40215138 40215422 -108568050 - AluY SINE Alu -36 275 1 198 378 25 8 chr11 40215833 40215952 -108567520 + L2 LINE L2 1803 1923 -1391 1438 222 43 0 chr11 40216334 40216658 -108566814 + MER58B DNA MER1_type 2 339 -2 240 304 14 0 chr11 40216737 40216806 -108566666 + MIR SINE MIR 87 156 -106 239 266 16 0 chr11 40216965 40217029 -108566443 - MLT1K LTR MaLR -2 586 522 23 33 0 0 chr11 40217031 40217061 -108566411 + AT_rich Low_complexity Low_complexity 1 30 0 224 167 45 15 chr11 40217078 40217144 -108566328 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 0 0 0 chr11 40218006 40218029 -108565443 + AT_rich Low_complexity Low_complexity 1 23 0 1175 76 0 0 chr11 40218208 40218353 -108565119 + AluSq SINE Alu 75 219 -94 25 31 0 0 chr11 40218677 40218709 -108564763 + AT_rich Low_complexity Low_complexity 1 32 0 219 163 20 41 chr11 40219126 40219175 -108564297 + MIR SINE MIR 17 64 -198 432 0 0 0 chr11 40219877 40219925 -108563547 + (GA)n Simple_repeat Simple_repeat 1 48 0 274 286 83 0 chr11 40220691 40220775 -108562697 + MIR SINE MIR 81 171 -91 276 289 33 16 chr11 40221091 40221212 -108562260 + L2 LINE L2 2267 2389 -925 188 418 8 55 chr11 40221432 40221688 -108561784 + L2 LINE L2 2831 3074 -198 285 279 98 8 chr11 40221873 40221995 -108561477 + L2 LINE L2 3181 3313 0 288 356 86 6 chr11 40222961 40223135 -108560337 - MIR SINE MIR -74 188 1 25 31 0 0 chr11 40224968 40225000 -108558472 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 40225059 40225083 -108558389 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 904 306 160 16 chr11 40225251 40225935 -108557537 - L2 LINE L2 0 3313 2529 331 333 58 13 chr11 40225938 40226094 -108557378 - MIR SINE MIR -34 228 66 1311 96 62 10 chr11 40226487 40226696 -108556776 - AluYa5 SINE Alu -91 220 1 1179 254 112 65 chr11 40226697 40227432 -108556040 - L1MDa LINE L1 -1904 4740 3972 296 246 0 14 chr11 40227476 40227545 -108555927 + Tigger5 DNA MER2_type 2256 2323 0 429 292 25 5 chr11 40227547 40227749 -108555723 - L1MDa LINE L1 -2688 3956 3751 920 265 43 34 chr11 40227764 40228210 -108555262 - L1MDa LINE L1 -3530 3114 2665 945 228 18 60 chr11 40228339 40228620 -108554852 - LTR4 LTR ERV1 -11 585 317 434 241 150 115 chr11 40228708 40229048 -108554424 - LTR4 LTR ERV1 -239 357 6 347 310 37 36 chr11 40229083 40229437 -108554035 - L1MDa LINE L1 -3936 2708 1179 933 291 80 38 chr11 40229587 40230164 -108553308 - L1M4 LINE L1 -5067 1475 875 23 68 0 0 chr11 40231704 40231748 -108551724 + AT_rich Low_complexity Low_complexity 1 44 0 260 213 0 33 chr11 40231757 40231818 -108551654 + MLT1J LTR MaLR 1 59 -452 561 236 17 11 chr11 40232723 40232897 -108550575 + MER104 DNA MER2_type 2 176 -4 718 165 8 16 chr11 40233041 40233168 -108550304 + FRAM SINE Alu 37 162 -14 402 245 35 120 chr11 40233239 40233337 -108550135 - L2 LINE L2 -590 2724 2650 1961 136 0 3 chr11 40233337 40233623 -108549849 + AluSx SINE Alu 1 285 -27 402 245 35 120 chr11 40233623 40233724 -108549748 - L2 LINE L2 -664 2650 2542 301 222 105 72 chr11 40233754 40233907 -108549565 - L1MC5 LINE L1 -45 7916 7759 2025 90 4 0 chr11 40233942 40234198 -108549274 + AluSp SINE Alu 25 281 -32 24 0 0 0 chr11 40234322 40234346 -108549126 + AT_rich Low_complexity Low_complexity 1 24 0 1078 262 112 44 chr11 40234353 40235087 -108548385 + HAL1b LINE L1 335 1118 -230 23 0 0 0 chr11 40235113 40235136 -108548336 + AT_rich Low_complexity Low_complexity 1 23 0 229 138 17 17 chr11 40235180 40235238 -108548234 + (TA)n Simple_repeat Simple_repeat 1 58 0 30 0 0 0 chr11 40235332 40235362 -108548110 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 40235455 40235484 -108547988 + AT_rich Low_complexity Low_complexity 1 29 0 318 278 58 88 chr11 40236089 40236294 -108547178 - MLT1K LTR MaLR -162 426 228 630 318 18 9 chr11 40237212 40237435 -108546037 + MIR SINE MIR 9 233 -29 343 258 45 0 chr11 40238781 40238870 -108544602 + L1MC4 LINE L1 6613 6705 -1337 192 357 14 14 chr11 40239267 40239337 -108544135 + L2 LINE L2 3187 3256 -16 613 242 37 65 chr11 40239510 40239725 -108543747 - L2 LINE L2 0 3313 3105 1102 143 14 90 chr11 40239904 40240127 -108543345 + MER2 DNA MER2_type 1 206 -139 299 299 0 0 chr11 40240187 40240254 -108543218 + MER2 DNA MER2_type 279 345 0 7475 137 38 13 chr11 40241519 40242659 -108540813 + HSMAR2 DNA Mariner 2 1199 -103 4579 61 35 0 chr11 40242659 40243252 -108540220 + L1PA7 LINE L1 5530 6143 -11 7475 137 38 13 chr11 40243252 40243357 -108540115 + HSMAR2 DNA Mariner 1199 1300 -2 778 274 42 45 chr11 40243358 40243694 -108539778 - L1ME1 LINE L1 -25 6141 5807 * 4096 222 28 2 chr11 40243683 40245144 -108538328 - L1MB7 LINE L1 -12 6172 4670 740 234 37 0 chr11 40245145 40245333 -108538139 - L1ME1 LINE L1 -341 5825 5631 1630 157 69 39 chr11 40246795 40247159 -108536313 + THE1C LTR MaLR 1 375 0 1875 61 8 16 chr11 40247499 40247786 -108535686 + AluY SINE Alu 68 352 0 244 134 19 17 chr11 40247838 40247896 -108535576 + MLT1J2 LTR MaLR 362 501 -41 30 27 0 0 chr11 40248162 40248199 -108535273 + AT_rich Low_complexity Low_complexity 1 37 0 546 319 30 33 chr11 40248263 40248533 -108534939 + L2 LINE L2 3045 3313 0 22 0 0 0 chr11 40248601 40248623 -108534849 + AT_rich Low_complexity Low_complexity 1 22 0 513 250 108 0 chr11 40250796 40250944 -108532528 - FRAM SINE Alu -1 165 2 1895 199 18 0 chr11 40253862 40254204 -108529268 + MER7A DNA MER2_type 1 346 0 753 51 0 0 chr11 40254885 40254983 -108528489 + L1P LINE L1 4783 4880 -1266 21 57 0 0 chr11 40255782 40255817 -108527655 + AT_rich Low_complexity Low_complexity 1 35 0 555 115 35 46 chr11 40255824 40255954 -108527518 - L1MA4A LINE L1 -27 6276 6139 500 327 75 5 chr11 40256765 40256964 -108526508 - MIR SINE MIR -45 217 5 23 68 0 0 chr11 40256997 40257041 -108526431 + AT_rich Low_complexity Low_complexity 1 44 0 6871 139 40 120 chr11 40257119 40257539 -108525933 + L1MA2 LINE L1 3576 4028 -2276 1994 169 31 19 chr11 40257539 40257899 -108525573 - THE1B LTR MaLR 0 364 1 11467 105 6 2 chr11 40257899 40259472 -108524000 - THE1B-int LTR MaLR 0 1580 1 910 164 66 0 chr11 40259472 40259624 -108523848 - THE1B LTR MaLR 0 364 203 6871 139 40 120 chr11 40259624 40262038 -108521434 + L1MA2 LINE L1 4025 6304 0 40341 54 4 7 chr11 40262413 40264977 -108518495 - L1PA4 LINE L1 0 6155 3584 5862 77 5 292 chr11 40264977 40266859 -108516613 - SVA Other Other -2 1384 43 234 0 0 0 chr11 40266859 40266885 -108516587 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 40341 54 4 7 chr11 40266885 40270257 -108513215 - L1PA4 LINE L1 -2569 3586 237 261 0 0 0 chr11 40270809 40270838 -108512634 + (TG)n Simple_repeat Simple_repeat 2 30 0 1022 202 0 5 chr11 40271455 40271653 -108511819 + MER3 DNA MER1_type 13 209 0 25 31 0 0 chr11 40271962 40271994 -108511478 + AT_rich Low_complexity Low_complexity 1 32 0 230 208 125 83 chr11 40272269 40272389 -108511083 - MLT1H LTR MaLR -314 235 111 2076 99 3 7 chr11 40272772 40273075 -108510397 + L1PA8 LINE L1 5866 6167 -5 337 304 96 50 chr11 40274430 40274670 -108508802 - L2 LINE L2 -469 2845 2595 225 0 0 0 chr11 40275403 40275428 -108508044 + (CA)n Simple_repeat Simple_repeat 2 26 0 1449 209 47 12 chr11 40276558 40276897 -108506575 - MLT1A1 LTR MaLR -4 361 11 923 277 105 49 chr11 40276924 40277333 -108506139 + MLT1H LTR MaLR 1 485 -64 1713 167 31 3 chr11 40277333 40277620 -108505852 - AluJb SINE Alu -17 295 1 923 277 105 49 chr11 40277620 40277687 -108505785 + MLT1H LTR MaLR 485 547 -2 1493 129 0 0 chr11 40277962 40278179 -108505293 - AluSg/x SINE Alu 0 312 96 242 331 70 32 chr11 40278385 40278542 -108504930 + MIR SINE MIR 10 172 -90 3142 29 5 0 chr11 40278551 40278927 -108504545 + L1PA4 LINE L1 5778 6155 0 566 224 5 107 chr11 40278963 40279041 -108504431 - MIR SINE MIR -4 258 174 1974 114 0 4 chr11 40279041 40279391 -108504081 - AluSg SINE Alu 0 349 1 566 224 5 107 chr11 40279391 40279507 -108503965 - MIR SINE MIR -88 174 83 333 271 0 0 chr11 40279509 40279579 -108503893 - Zaphod DNA AcHobo -2 4029 3960 224 57 0 29 chr11 40279579 40279614 -108503858 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 291 308 26 0 chr11 40280471 40280549 -108502923 - Zaphod DNA AcHobo -3951 80 1 256 375 0 0 chr11 40280563 40280635 -108502837 - MIR SINE MIR -188 74 3 384 230 40 20 chr11 40281819 40281919 -108501553 - MIR SINE MIR 0 262 161 21 0 0 0 chr11 40282275 40282296 -108501176 + AT_rich Low_complexity Low_complexity 1 21 0 236 212 8 83 chr11 40282425 40282557 -108500915 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 230 272 99 12 chr11 40283692 40283773 -108499699 - L2 LINE L2 0 3313 3226 370 318 47 7 chr11 40284185 40284333 -108499139 + MIR SINE MIR 70 223 -39 183 250 13 105 chr11 40286313 40286389 -108497083 - MER5A DNA MER1_type 0 189 121 239 326 130 11 chr11 40287997 40288181 -108495291 - L2 LINE L2 -9 3304 3099 326 321 74 19 chr11 40288463 40288678 -108494794 - L2 LINE L2 -557 2757 2531 1249 249 55 53 chr11 40288833 40289512 -108493960 - L1ME2 LINE L1 -47 6117 5409 625 279 31 25 chr11 40289628 40289950 -108493522 - L1ME2 LINE L1 -917 5229 4906 283 263 37 141 chr11 40290511 40290781 -108492691 - L2 LINE L2 -2770 544 303 222 229 42 104 chr11 40290825 40290921 -108492551 + MIR SINE MIR 94 183 -79 201 156 0 0 chr11 40291064 40291096 -108492376 + (TATG)n Simple_repeat Simple_repeat 4 35 0 478 108 12 48 chr11 40291619 40291702 -108491770 + MADE1 DNA Mariner 1 80 0 1610 221 40 80 chr11 40291869 40292195 -108491277 + MLT1D LTR MaLR 1 300 -205 2164 92 31 3 chr11 40292195 40292488 -108490984 + AluSc SINE Alu 8 308 -1 1610 221 40 80 chr11 40292488 40292687 -108490785 + MLT1D LTR MaLR 300 505 0 1340 209 72 17 chr11 40292987 40293332 -108490140 + MLT1A1 LTR MaLR 1 364 -1 681 188 113 75 chr11 40293337 40293550 -108489922 + MLT2B1 LTR ERVL 176 396 -124 1824 145 95 0 chr11 40293630 40293913 -108489559 + AluSg SINE Alu 1 310 0 277 215 15 0 chr11 40295010 40295075 -108488397 - MER2 DNA MER2_type -136 209 144 2666 79 6 0 chr11 40295236 40295589 -108487883 + THE1A LTR MaLR 1 355 0 1513 184 29 46 chr11 40296275 40296623 -108486849 + MER2 DNA MER2_type 2 343 -1 24 32 0 0 chr11 40296874 40296905 -108486567 + AT_rich Low_complexity Low_complexity 1 31 0 861 55 0 0 chr11 40296905 40297014 -108486458 - L1PA5 LINE L1 -16 6138 6030 866 213 0 48 chr11 40297035 40297223 -108486249 - MER58A DNA MER1_type -39 185 7 272 276 199 0 chr11 40298490 40298611 -108484861 - MIR3 SINE MIR -12 196 57 26 0 0 0 chr11 40299038 40299064 -108484408 + AT_rich Low_complexity Low_complexity 1 26 0 2313 92 0 0 chr11 40299374 40299668 -108483804 - AluY SINE Alu -3 308 15 240 287 58 35 chr11 40299992 40300079 -108483393 + L2 LINE L2 3225 3313 0 845 177 11 19 chr11 40300173 40300359 -108483113 - L1MA1 LINE L1 -464 5838 5657 7704 20 2 0 chr11 40300360 40301529 -108481943 - L1PA2 LINE L1 0 6155 4986 7074 24 0 1 chr11 40301529 40302366 -108481106 + L1PA2 LINE L1 4148 4983 -1163 2288 195 4 39 chr11 40302376 40302914 -108480558 + L1MA10 LINE L1 5815 6333 -1 287 294 228 0 chr11 40303084 40303264 -108480208 + MLT1K LTR MaLR 366 586 -2 24 32 0 0 chr11 40303494 40303525 -108479947 + AT_rich Low_complexity Low_complexity 1 31 0 459 133 51 0 chr11 40305343 40305441 -108478031 + GA-rich Low_complexity Low_complexity 3 105 0 360 0 0 0 chr11 40305458 40305498 -108477974 + (CAGGG)n Simple_repeat Simple_repeat 2 41 0 561 259 62 48 chr11 40306045 40306354 -108477118 + L1MC4a LINE L1 5655 5967 -1841 220 222 86 0 chr11 40306372 40306453 -108477019 + (TAAAG)n Simple_repeat Simple_repeat 5 92 0 334 274 57 16 chr11 40306776 40306900 -108476572 + L1MC5 LINE L1 7805 7933 -28 776 250 20 5 chr11 40307260 40307464 -108476008 - MER3 DNA MER1_type -1 208 2 1976 107 7 4 chr11 40307548 40307862 -108475610 - AluSq SINE Alu 0 315 1 225 236 14 14 chr11 40308463 40308535 -108474937 + (TA)n Simple_repeat Simple_repeat 2 73 0 243 0 0 0 chr11 40308535 40308562 -108474910 + (CA)n Simple_repeat Simple_repeat 2 28 0 1432 308 65 25 chr11 40308568 40309077 -108474395 + MLT1E2 LTR MaLR 89 617 -9 235 297 110 8 chr11 40309653 40309771 -108473701 - MIR SINE MIR -2 260 131 260 316 58 4 chr11 40310894 40311005 -108472467 - MIR SINE MIR -89 119 2 263 322 167 23 chr11 40311551 40311725 -108471747 + MIR SINE MIR 56 254 -8 644 348 16 4 chr11 40312623 40312873 -108470599 + MIR SINE MIR 7 259 -3 275 273 13 0 chr11 40313094 40313171 -108470301 + MER117 DNA MER1_type 71 148 -49 4794 154 43 19 chr11 40313549 40314433 -108469039 + MER4D LTR ERV1 1 664 0 1348 239 73 23 chr11 40314462 40314898 -108468574 - LTR38 LTR ERV1 -12 544 87 21 0 0 0 chr11 40314926 40314947 -108468525 + AT_rich Low_complexity Low_complexity 1 21 0 595 115 0 0 chr11 40315246 40315333 -108468139 + MER39 LTR ERV1 1 87 -620 305 259 96 7 chr11 40315336 40315471 -108468001 + L1MA5A LINE L1 6147 6293 -4 630 0 47 0 chr11 40315889 40315974 -108467498 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 200 332 141 48 chr11 40316738 40317136 -108466336 + L2 LINE L2 1224 1658 -1656 246 296 14 0 chr11 40317209 40317280 -108466192 - MIR SINE MIR -93 169 98 2416 134 3 6 chr11 40318040 40318405 -108465067 - THE1B LTR MaLR 0 364 1 1194 292 76 54 chr11 40318649 40319225 -108464247 + MLT1G LTR MaLR 7 590 0 23 33 0 0 chr11 40320438 40320468 -108463004 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr11 40320525 40320570 -108462902 + AT_rich Low_complexity Low_complexity 1 45 0 306 278 197 50 chr11 40320681 40320940 -108462532 + L2 LINE L2 1827 2123 -1191 183 80 0 0 chr11 40320948 40320973 -108462499 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 679 325 85 10 chr11 40321135 40321430 -108462042 + L2 LINE L2 2640 2956 -358 26 30 0 0 chr11 40321882 40321915 -108461557 + AT_rich Low_complexity Low_complexity 1 33 0 559 297 108 9 chr11 40322282 40322494 -108460978 - MIR SINE MIR -1 261 29 23 0 0 0 chr11 40323202 40323225 -108460247 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr11 40323534 40323569 -108459903 + (CA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr11 40323569 40323600 -108459872 + (CA)n Simple_repeat Simple_repeat 2 32 0 2560 64 0 0 chr11 40323719 40324030 -108459442 + AluY SINE Alu 1 311 0 239 354 30 0 chr11 40324148 40324247 -108459225 + L1ME LINE L1 12 113 -5957 279 0 0 0 chr11 40324276 40324307 -108459165 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4269 34 2 0 chr11 40324307 40324815 -108458657 - L1PA3 LINE L1 -18 6137 5629 8294 168 20 22 chr11 40325017 40326916 -108456556 - L1MA6 LINE L1 -697 5603 3706 3871 154 12 6 chr11 40326917 40327600 -108455872 + L1MA6 LINE L1 5614 6300 0 303 286 62 75 chr11 40327725 40328275 -108455197 - L1MEd LINE L1 -4931 1188 646 1026 216 147 63 chr11 40330535 40330854 -108452618 + L1M2c LINE L1 7 352 -6437 416 279 7 3 chr11 40330860 40330999 -108452473 + MER5A DNA MER1_type 6 187 -2 884 295 105 8 chr11 40331188 40331588 -108451884 - L1ME3 LINE L1 -67 6375 5937 696 246 36 0 chr11 40331605 40331772 -108451700 - LTR16C LTR ERVL 0 491 319 717 280 46 39 chr11 40332058 40332365 -108451107 - L1ME3 LINE L1 -512 5930 5622 267 299 33 56 chr11 40332363 40332467 -108451005 - L1ME3 LINE L1 -1091 5335 5237 * 1755 162 32 0 chr11 40332467 40332751 -108450721 + AluSx SINE Alu 1 293 -19 267 299 33 56 chr11 40332751 40332860 -108450612 - L1ME3 LINE L1 -1189 5237 5127 229 308 70 19 chr11 40332911 40333067 -108450405 - L1ME3 LINE L1 -5021 1405 1242 514 276 16 0 chr11 40333327 40333450 -108450022 + FLAM_A SINE Alu 1 125 -8 1719 128 81 36 chr11 40333454 40333813 -108449659 - THE1C LTR MaLR 0 375 1 4642 189 14 12 chr11 40333908 40334962 -108448510 + L1MB2 LINE L1 5112 6169 -2 1503 286 27 33 chr11 40334988 40335471 -108448001 - MLT1F LTR MaLR -62 480 1 26 30 0 0 chr11 40336326 40336359 -108447113 + AT_rich Low_complexity Low_complexity 1 33 0 28 48 0 0 chr11 40336373 40336415 -108447057 + AT_rich Low_complexity Low_complexity 1 42 0 237 299 52 10 chr11 40336415 40336512 -108446960 - MIR SINE MIR -14 248 148 357 331 32 0 chr11 40336744 40336898 -108446574 - MLT1J1 LTR MaLR -227 219 61 271 214 57 0 chr11 40336935 40337005 -108446467 + MLT1J LTR MaLR 1 74 -437 409 155 52 21 chr11 40337008 40337105 -108446367 - MER50 LTR ERV1 -130 604 505 463 237 10 0 chr11 40337147 40337244 -108446228 + MLT1J LTR MaLR 70 167 -344 643 275 77 10 chr11 40337341 40337548 -108445924 + MLT1J LTR MaLR 291 511 0 482 323 72 24 chr11 40338450 40338617 -108444855 + MIR3 SINE MIR 17 191 -17 38 75 0 0 chr11 40338894 40338974 -108444498 + AT_rich Low_complexity Low_complexity 1 80 0 497 198 17 35 chr11 40339678 40339794 -108443678 + MER20 DNA MER1_type 104 217 -2 26 30 0 0 chr11 40339807 40339840 -108443632 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr11 40340253 40340279 -108443193 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1988 91 7 4 chr11 40340279 40340554 -108442918 - AluY SINE Alu -33 278 3 1043 244 4 15 chr11 40340571 40340833 -108442639 - L1MB8 LINE L1 -41 6137 5879 2447 171 45 6 chr11 40390970 40391484 -108391988 + L1MA9 LINE L1 5776 6309 -3 24 53 0 0 chr11 40391516 40391554 -108391918 + AT_rich Low_complexity Low_complexity 1 38 0 804 235 11 11 chr11 40391688 40391875 -108391597 - MER2 DNA MER2_type -1 344 158 2852 187 80 87 chr11 40391876 40392004 -108391468 + MER21A LTR ERV1 3 130 -801 5661 34 0 0 chr11 40392004 40392679 -108390793 - L1PA4 LINE L1 -6 6149 5475 2951 37 0 0 chr11 40392679 40393055 -108390417 - L1PA3 LINE L1 0 6155 5794 2852 187 80 87 chr11 40393055 40393860 -108389612 + MER21A LTR ERV1 128 931 0 775 184 95 0 chr11 40393860 40394006 -108389466 - MER2 DNA MER2_type -182 163 4 22 35 0 0 chr11 40394035 40394064 -108389408 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr11 40394444 40394486 -108388986 + AT_rich Low_complexity Low_complexity 1 42 0 333 185 0 0 chr11 40394642 40394707 -108388765 + GA-rich Low_complexity Low_complexity 3 67 0 33 25 0 0 chr11 40394754 40394794 -108388678 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr11 40394820 40394866 -108388606 + AT_rich Low_complexity Low_complexity 1 46 0 332 189 71 18 chr11 40394867 40395036 -108388436 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 33 66 0 0 chr11 40395049 40395110 -108388362 + AT_rich Low_complexity Low_complexity 1 61 0 431 185 144 30 chr11 40395756 40395916 -108387556 - MIR SINE MIR -26 236 55 2341 191 63 15 chr11 40396015 40396477 -108386995 + LTR42 LTR ERVL 1 484 -11 272 204 19 0 chr11 40398164 40398218 -108385254 + L1ME4a LINE L1 5855 5909 -212 1016 267 209 25 chr11 40398218 40398663 -108384809 + MLT1G LTR MaLR 1 527 -63 375 244 78 22 chr11 40398678 40398858 -108384614 - MER63 DNA MER1_type -2 1060 871 347 89 18 0 chr11 40398938 40398994 -108384478 + (TA)n Simple_repeat Simple_repeat 2 58 0 1775 112 56 7 chr11 40399845 40400157 -108383315 + AluSx SINE Alu 3 327 0 38 51 0 0 chr11 40400318 40400377 -108383095 + AT_rich Low_complexity Low_complexity 1 59 0 22 25 0 25 chr11 40400496 40400515 -108382957 + AT_rich Low_complexity Low_complexity 1 19 -20 2045 134 0 0 chr11 40400515 40400799 -108382673 + AluSc SINE Alu 1 284 -25 22 25 0 25 chr11 40400799 40400819 -108382653 + AT_rich Low_complexity Low_complexity 19 39 0 4681 151 6 32 chr11 40401303 40402143 -108381329 - L1MC1 LINE L1 -2 6331 5514 216 170 0 0 chr11 40402220 40402273 -108381199 + A-rich Low_complexity Low_complexity 1 53 0 381 314 94 11 chr11 40402329 40402520 -108380952 + L1MEc LINE L1 540 746 -5650 1284 116 63 0 chr11 40402522 40402711 -108380761 + AluSp SINE Alu 2 202 -111 3679 148 53 26 chr11 40402760 40403852 -108379620 - MER11A LTR ERVK 0 1236 1 464 264 78 48 chr11 40403852 40404223 -108379249 + L1MEc LINE L1 853 1234 -5162 52 17 0 0 chr11 40404284 40404343 -108379129 + AT_rich Low_complexity Low_complexity 1 59 0 2001 142 0 7 chr11 40404453 40404755 -108378717 + AluSq SINE Alu 1 300 -13 3642 279 51 31 chr11 40404823 40406582 -108376890 + L1MEc LINE L1 2383 4176 -2039 1671 272 60 7 chr11 40406815 40407544 -108375928 - L1MCb LINE L1 -2906 3658 2891 1310 251 39 31 chr11 40407569 40408054 -108375418 - L1M4 LINE L1 -897 5747 5259 2310 267 57 37 chr11 40408083 40409189 -108374283 - L1M4 LINE L1 -2191 4453 3326 1776 164 146 11 chr11 40409189 40409566 -108373906 - MSTA LTR MaLR 0 428 1 8798 164 7 35 chr11 40409566 40411189 -108372283 - MSTA-int LTR MaLR 0 1580 3 1949 160 128 8 chr11 40411191 40411573 -108371899 - MSTA LTR MaLR 0 428 1 1238 274 82 59 chr11 40411589 40411723 -108371749 - L1M4 LINE L1 -5572 970 841 207 0 0 0 chr11 40411723 40411746 -108371726 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 1238 274 82 59 chr11 40411746 40412206 -108371266 - L1M4 LINE L1 -5701 841 362 300 291 60 26 chr11 40412208 40412325 -108371147 - L1M4 LINE L1 -6269 273 153 2057 227 85 68 chr11 40412402 40413407 -108370065 - L1MCb LINE L1 -4761 1803 757 2691 270 67 22 chr11 40413420 40413884 -108369588 - L1MCb LINE L1 -5012 1033 591 3774 150 4 64 chr11 40413884 40414619 -108368853 - LTR8 LTR ERV1 0 691 1 2691 270 67 22 chr11 40414619 40415109 -108368363 - L1MCb LINE L1 -5454 591 36 355 339 77 46 chr11 40415220 40415377 -108368095 + L1ME2 LINE L1 2692 2843 -3303 2235 95 7 3 chr11 40415377 40415683 -108367789 - AluSq SINE Alu -6 307 1 355 339 77 46 chr11 40415683 40415876 -108367596 + L1ME2 LINE L1 2843 3053 -3093 229 261 17 35 chr11 40415971 40416086 -108367386 + L1ME2 LINE L1 5275 5387 -2421 28 71 0 0 chr11 40417191 40417247 -108366225 + AT_rich Low_complexity Low_complexity 1 56 0 367 333 51 1 chr11 40417472 40417621 -108365851 - MIR SINE MIR -68 140 39 28 0 0 0 chr11 40418152 40418180 -108365292 + AT_rich Low_complexity Low_complexity 1 28 0 7389 25 1 0 chr11 40418294 40419755 -108363717 - L1PA3 LINE L1 -46 6109 4648 401 328 41 31 chr11 40419748 40419943 -108363529 + L1MEc LINE L1 116 312 -6084 * 562 282 54 37 chr11 40420029 40420397 -108363075 + L1ME2 LINE L1 5657 6027 -137 271 299 39 19 chr11 40420403 40420557 -108362915 + L1MA10 LINE L1 6174 6330 -4 1035 191 164 43 chr11 40420654 40420978 -108362494 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr11 40421810 40421832 -108361640 + AT_rich Low_complexity Low_complexity 1 22 0 319 321 36 29 chr11 40421982 40422122 -108361350 + MIR SINE MIR 48 188 -74 293 283 215 34 chr11 40422257 40422434 -108361038 + L2 LINE L2 2827 3035 -278 1403 214 38 13 chr11 40423265 40423578 -108359894 + MER58B DNA MER1_type 3 323 -18 812 169 46 72 chr11 40423953 40424148 -108359324 + MLT1A1 LTR MaLR 2 191 -174 826 251 1 11 chr11 40425578 40425787 -108357685 - MLT1A2 LTR MaLR 0 386 184 1845 137 52 27 chr11 40425879 40426208 -108357264 - THE1B LTR MaLR -25 339 3 266 77 0 0 chr11 40426209 40426248 -108357224 - THE1B-int LTR MaLR 0 1580 1542 * 8798 115 7 1 chr11 40426231 40427467 -108356005 - THE1B-int LTR MaLR -336 1244 1 2169 127 48 22 chr11 40427467 40427822 -108355650 - THE1B LTR MaLR 0 364 1 553 143 10 41 chr11 40427949 40428047 -108355425 - MLT1A2 LTR MaLR -276 98 4 802 221 15 56 chr11 40428107 40428302 -108355170 + MER58A DNA MER1_type 38 224 0 757 228 5 46 chr11 40428361 40428558 -108354914 - MER5A DNA MER1_type 0 189 1 385 307 65 7 chr11 40428868 40429021 -108354451 - MIR SINE MIR -95 167 6 208 263 20 101 chr11 40429315 40429414 -108354058 + L3 LINE CR1 572 662 -915 345 364 15 39 chr11 40429460 40429666 -108353806 - MIR SINE MIR -42 220 20 252 122 0 0 chr11 40430458 40430499 -108352973 + (TG)n Simple_repeat Simple_repeat 2 42 0 835 287 21 4 chr11 40431051 40431288 -108352184 - MIR SINE MIR -10 252 12 491 278 31 6 chr11 40431571 40431733 -108351739 - Charlie8 DNA MER1_type -1954 463 298 189 0 0 0 chr11 40432281 40432302 -108351170 + (TA)n Simple_repeat Simple_repeat 1 21 0 272 336 187 8 chr11 40432319 40432453 -108351019 - MLT1I LTR MaLR -66 343 186 22 0 0 0 chr11 40434342 40434364 -108349108 + AT_rich Low_complexity Low_complexity 1 22 0 204 175 25 0 chr11 40434543 40434583 -108348889 + (TA)n Simple_repeat Simple_repeat 2 42 0 296 316 37 0 chr11 40434798 40434934 -108348538 + L1MC4 LINE L1 6870 7010 -1032 200 333 52 31 chr11 40435465 40435561 -108347911 - MIR SINE MIR -142 120 23 491 45 0 15 chr11 40436510 40436577 -108346895 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 1791 161 7 3 chr11 40436577 40436882 -108346590 - AluSg SINE Alu -2 308 3 217 205 0 0 chr11 40436979 40437018 -108346454 + (TG)n Simple_repeat Simple_repeat 2 40 0 853 243 11 107 chr11 40437407 40437687 -108345785 - MER21B LTR ERV1 -610 253 1 555 327 67 0 chr11 40439054 40439262 -108344210 + MIR SINE MIR 39 260 -2 633 303 60 23 chr11 40439286 40439504 -108343968 - MIR SINE MIR -27 235 10 11743 206 22 39 chr11 40441591 40445469 -108338003 + L1PA16 LINE L1 1197 5137 -1732 243 0 0 0 chr11 40445469 40445496 -108337976 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1778 61 0 0 chr11 40445496 40445725 -108337747 - L1PA8 LINE L1 -11 6161 5933 11743 206 22 39 chr11 40445725 40446611 -108336861 + L1PA16 LINE L1 5136 6035 -834 2175 60 3 50 chr11 40446611 40446911 -108336561 + AluY SINE Alu 5 290 -21 11743 206 22 39 chr11 40446911 40447732 -108335740 + L1PA16 LINE L1 6035 6682 -187 1934 120 3 7 chr11 40447732 40448015 -108335457 + AluSx SINE Alu 1 282 -30 11743 206 22 39 chr11 40448015 40448200 -108335272 + L1PA16 LINE L1 6682 6869 0 30 0 0 0 chr11 40450826 40450856 -108332616 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr11 40451022 40451070 -108332402 + AT_rich Low_complexity Low_complexity 1 48 0 344 259 19 37 chr11 40451236 40451344 -108332128 - L2 LINE L2 0 3313 3208 609 308 72 42 chr11 40451484 40451574 -108331898 - LTR40a LTR ERVL -2 517 431 1641 121 114 11 chr11 40451574 40451854 -108331618 + AluSg1 SINE Alu 1 309 0 609 308 72 42 chr11 40451854 40452149 -108331323 - LTR40a LTR ERVL -88 431 120 408 286 101 48 chr11 40452173 40452362 -108331110 - LTR40a LTR ERVL -320 199 1 204 97 0 0 chr11 40453194 40453225 -108330247 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 203 276 0 0 chr11 40453534 40453592 -108329880 + (TA)n Simple_repeat Simple_repeat 2 59 0 204 97 0 0 chr11 40453606 40453637 -108329835 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 432 0 0 0 chr11 40453636 40453684 -108329788 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr11 40454766 40454788 -108328684 + AT_rich Low_complexity Low_complexity 1 22 0 444 325 76 19 chr11 40455436 40455593 -108327879 - MIR3 SINE MIR -10 198 33 27 87 0 0 chr11 40456419 40456488 -108326984 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr11 40456664 40456687 -108326785 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 40457708 40457732 -108325740 + AT_rich Low_complexity Low_complexity 1 24 0 1379 132 36 0 chr11 40457739 40457989 -108325483 - L1MA7 LINE L1 -5 6286 6028 251 200 133 92 chr11 40458109 40458229 -108325243 - L2 LINE L2 0 3313 3189 246 327 45 9 chr11 40458315 40458425 -108325047 + MIR SINE MIR 47 160 -102 22 70 0 0 chr11 40460030 40460073 -108323399 + AT_rich Low_complexity Low_complexity 1 43 0 315 373 46 0 chr11 40460130 40460283 -108323189 - MIR SINE MIR -49 213 54 284 309 49 3 chr11 40460875 40461039 -108322433 + MIR SINE MIR 13 228 -34 484 42 28 0 chr11 40462167 40462238 -108321234 + (TC)n Simple_repeat Simple_repeat 2 74 0 396 0 0 0 chr11 40462329 40462373 -108321099 + (TA)n Simple_repeat Simple_repeat 1 44 0 236 279 51 13 chr11 40462436 40462515 -108320957 + MLT1J1 LTR MaLR 80 161 -285 675 279 89 42 chr11 40463884 40464264 -108319208 + L1ME3A LINE L1 5725 6122 -48 23 0 0 0 chr11 40464735 40464758 -108318714 + AT_rich Low_complexity Low_complexity 1 23 0 396 259 6 51 chr11 40465137 40465295 -108318177 + L1MB7 LINE L1 581 731 -5549 2191 266 39 52 chr11 40465302 40466180 -108317292 + L1MB7 LINE L1 1059 1947 -4435 1407 219 0 24 chr11 40466180 40466499 -108316973 + AluJb SINE Alu 2 313 0 2191 266 39 52 chr11 40466499 40467554 -108315918 + L1MB7 LINE L1 1947 3043 -3339 1653 254 30 10 chr11 40467630 40468260 -108315212 + L1MB7 LINE L1 5158 5803 -743 1506 222 39 10 chr11 40468261 40468667 -108314805 + L1MB7 LINE L1 6003 6420 0 1949 161 3 0 chr11 40471114 40471424 -108312048 - AluSx SINE Alu -1 311 1 273 298 62 67 chr11 40472103 40472281 -108311191 - L2 LINE L2 -2474 840 664 1627 282 77 39 chr11 40472327 40472898 -108310574 + MLT1E LTR MaLR 1 593 0 198 71 0 0 chr11 40473151 40473179 -108310293 + (CAT)n Simple_repeat Simple_repeat 3 30 0 207 189 0 0 chr11 40473219 40473256 -108310216 + MIR SINE MIR 190 226 -36 1892 239 69 31 chr11 40475750 40476228 -108307244 + MLT1D LTR MaLR 10 505 0 22 70 0 0 chr11 40476453 40476496 -108306976 + AT_rich Low_complexity Low_complexity 1 43 0 293 309 186 21 chr11 40476753 40476941 -108306531 + MIR SINE MIR 12 230 -32 23 86 0 0 chr11 40477394 40477452 -108306020 + AT_rich Low_complexity Low_complexity 1 58 0 1780 115 0 0 chr11 40477629 40477863 -108305609 + AluSc SINE Alu 1 234 -75 2207 149 25 3 chr11 40478046 40478402 -108305070 + THE1B LTR MaLR 1 364 0 2160 140 21 9 chr11 40478614 40479073 -108304399 + L1M1 LINE L1 5152 5616 -687 1851 134 75 10 chr11 40479074 40479448 -108304024 - LTR7 LTR ERV1 0 450 1 3125 129 35 0 chr11 40479448 40479958 -108303514 - HERVH LTR ERV1 0 7713 7186 4980 158 6 4 chr11 40480068 40481025 -108302447 - HERVH LTR ERV1 -1805 5286 3873 1048 179 15 0 chr11 40481025 40481221 -108302251 - HERVH LTR ERV1 -4375 3338 3140 * 4324 139 2 21 chr11 40481200 40482412 -108301060 - HERVH LTR ERV1 -4718 2995 1711 2719 145 43 8 chr11 40482407 40483237 -108300235 - HERVH LTR ERV1 -6558 1155 1 * 1807 137 19 7 chr11 40483237 40483549 -108299923 - LTR7 LTR ERV1 0 450 85 3318 138 81 5 chr11 40483550 40484190 -108299282 + L1MA4A LINE L1 5613 6301 -2 180 135 0 0 chr11 40484266 40484303 -108299169 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1997 124 0 13 chr11 40484399 40484698 -108298774 + AluSc SINE Alu 3 297 -12 1387 244 23 47 chr11 40485070 40485542 -108297930 + MLT1C LTR MaLR 7 467 0 291 162 0 95 chr11 40485867 40485941 -108297531 + MSTC LTR MaLR 1 67 -361 1326 178 232 11 chr11 40485953 40486302 -108297170 + MSTB LTR MaLR 1 426 0 8950 144 7 42 chr11 40486304 40487938 -108295534 + MSTA-int LTR MaLR 3 1580 0 1504 182 190 0 chr11 40487938 40488295 -108295177 + MSTA LTR MaLR 3 428 0 239 210 12 123 chr11 40489252 40489333 -108294139 - Tigger5 DNA MER2_type -1 2322 2251 620 271 105 48 chr11 40489901 40490273 -108293199 - L2 LINE L2 -5 3308 2916 309 346 11 43 chr11 40490328 40490513 -108292959 + MER5A DNA MER1_type 11 189 0 1258 296 74 40 chr11 40491607 40492178 -108291294 + MLT1E LTR MaLR 4 593 0 187 356 49 91 chr11 40492578 40492963 -108290509 + L2 LINE L2 2903 3271 -1 281 269 0 15 chr11 40493024 40493091 -108290381 + MIR SINE MIR 81 146 -116 799 315 52 29 chr11 40493138 40493484 -108289988 - L2 LINE L2 -9 3304 2951 22 35 0 0 chr11 40493934 40493963 -108289509 + AT_rich Low_complexity Low_complexity 1 29 0 4277 182 50 12 chr11 40495333 40496465 -108287007 - L1MA6 LINE L1 -3 7716 6496 6947 207 24 11 chr11 40496736 40498582 -108284890 - L1MA6 LINE L1 -1053 6512 4636 967 206 79 82 chr11 40498672 40499247 -108284225 - L1MA6 LINE L1 -3664 3901 3313 231 339 59 47 chr11 40499586 40499822 -108283650 - MIR SINE MIR -18 244 6 220 359 99 8 chr11 40500112 40500243 -108283229 - L2 LINE L2 -4 3309 3167 22 35 0 0 chr11 40500265 40500294 -108283178 + AT_rich Low_complexity Low_complexity 1 29 0 1382 164 89 89 chr11 40501645 40502047 -108281425 + MSTB1 LTR MaLR 39 432 0 390 247 44 70 chr11 40502076 40502303 -108281169 - L1ME1 LINE L1 -201 6034 5814 1982 191 16 3 chr11 40502305 40502677 -108280795 - MLT1B LTR MaLR 0 390 14 947 242 22 9 chr11 40502739 40502962 -108280510 - L1ME1 LINE L1 -460 5773 5548 246 32 0 0 chr11 40502976 40503007 -108280465 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chr11 40503007 40503034 -108280438 + (GA)n Simple_repeat Simple_repeat 2 28 0 1414 201 75 3 chr11 40503083 40503377 -108280095 + MER7A DNA MER2_type 8 320 -26 1065 130 5 0 chr11 40503518 40503703 -108279769 - L1MA6 LINE L1 0 6300 6115 4076 167 21 49 chr11 40503806 40505034 -108278438 - L1MA6 LINE L1 -205 6095 4907 3324 157 22 18 chr11 40505107 40505774 -108277698 - L1MC1 LINE L1 0 6333 5664 1410 253 46 34 chr11 40505788 40506349 -108277123 - L1ME1 LINE L1 -841 5374 4807 660 160 37 9 chr11 40506548 40506725 -108276747 - L1P1 LINE L1 -678 5477 5295 955 261 138 35 chr11 40506764 40507573 -108275899 - L1ME1 LINE L1 -3875 2521 1629 3571 223 37 22 chr11 40507596 40508173 -108275299 - L1MB3 LINE L1 -9 6174 5584 4947 24 3 0 chr11 40508173 40508753 -108274719 + L1PA4 LINE L1 5574 6155 0 3571 223 37 22 chr11 40508753 40509228 -108274244 - L1MB3 LINE L1 -599 5584 5118 255 297 31 8 chr11 40509222 40509368 -108274104 - L1MDa LINE L1 -4614 2951 2774 * 751 168 0 0 chr11 40509451 40509576 -108273896 - AluJb SINE Alu -29 283 159 473 191 0 0 chr11 40509583 40509667 -108273805 - AluS SINE Alu -229 84 1 485 228 0 0 chr11 40511431 40511523 -108271949 - MER5A DNA MER1_type -89 100 9 3736 181 47 13 chr11 40512234 40512935 -108270537 - MER44D DNA MER2_type 0 605 9 21 36 0 0 chr11 40512976 40513004 -108270468 + AT_rich Low_complexity Low_complexity 1 28 0 381 351 56 48 chr11 40513208 40513275 -108270197 - MLT1D LTR MaLR 0 505 440 2591 3 0 0 chr11 40513275 40513557 -108269915 + AluYb8 SINE Alu 37 318 0 381 351 56 48 chr11 40513557 40513970 -108269502 - MLT1D LTR MaLR -65 440 21 1506 255 42 37 chr11 40514115 40514543 -108268929 - MLT1D LTR MaLR -74 431 2 752 344 25 19 chr11 40514545 40514905 -108268567 + MLT1K LTR MaLR 82 443 -145 27 62 0 0 chr11 40516249 40516297 -108267175 + AT_rich Low_complexity Low_complexity 1 48 0 219 355 56 52 chr11 40517299 40517530 -108265942 + MIR SINE MIR 1 232 -30 262 312 21 0 chr11 40517537 40517630 -108265842 + (TAG)n Simple_repeat Simple_repeat 2 96 0 280 43 43 0 chr11 40518658 40518704 -108264768 + (TC)n Simple_repeat Simple_repeat 1 48 0 268 368 14 35 chr11 40519140 40519428 -108264044 + ERVL LTR ERVL 5042 5323 -441 1053 329 17 41 chr11 40519621 40519931 -108263541 + LTR16A LTR ERVL 27 326 -124 2363 81 0 3 chr11 40519931 40520241 -108263231 - AluSc SINE Alu 0 309 1 1053 329 17 41 chr11 40520241 40520346 -108263126 + LTR16A LTR ERVL 326 432 -18 4508 175 14 49 chr11 40520547 40521794 -108261678 - L1MA8 LINE L1 -41 6250 5050 647 191 14 7 chr11 40521797 40521944 -108261528 + L1 LINE L1 5135 5282 -864 6592 30 0 0 chr11 40522769 40523564 -108259908 - L1P LINE L1 -3412 2734 1940 7457 31 1 0 chr11 40523564 40524534 -108258938 + L1PA3 LINE L1 5189 6159 0 22 35 0 0 chr11 40524696 40524725 -108258747 + AT_rich Low_complexity Low_complexity 1 29 0 365 94 0 50 chr11 40524730 40524807 -108258665 - MLT2B1 LTR ERVL 0 520 443 273 194 10 39 chr11 40524807 40524910 -108258562 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 1428 224 126 11 chr11 40524947 40525327 -108258145 - MLT2B1 LTR ERVL -91 429 6 22 0 0 0 chr11 40525658 40525680 -108257792 + AT_rich Low_complexity Low_complexity 1 22 0 1469 250 30 41 chr11 40525687 40526195 -108257277 - MLT1D LTR MaLR -1 504 3 453 231 19 139 chr11 40526202 40526418 -108257054 - MLT1D-int LTR MaLR -6 1729 1237 196 354 14 95 chr11 40527346 40527493 -108255979 - L2 LINE L2 0 3272 3138 24 0 0 0 chr11 40527497 40527521 -108255951 + AT_rich Low_complexity Low_complexity 1 24 0 5069 200 13 29 chr11 40528195 40528837 -108254635 + L1ME4a LINE L1 19 640 -5786 180 0 0 0 chr11 40528837 40528857 -108254615 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5069 200 13 29 chr11 40528857 40529264 -108254208 + L1ME4a LINE L1 640 1052 -5374 40 83 0 0 chr11 40529316 40529412 -108254060 + AT_rich Low_complexity Low_complexity 1 96 0 456 258 97 32 chr11 40529412 40529470 -108254002 + L1ME4a LINE L1 3839 3892 -2534 1142 129 129 105 chr11 40529470 40529507 -108253965 - THE1C LTR MaLR -2 373 338 1828 146 3 53 chr11 40529507 40529830 -108253642 + AluSx SINE Alu 1 307 -5 1142 129 129 105 chr11 40529830 40530155 -108253317 - THE1C LTR MaLR -37 338 2 456 258 97 32 chr11 40530155 40530344 -108253128 + L1ME4a LINE L1 3892 4102 -2324 323 227 0 0 chr11 40530392 40530458 -108253014 - L1ME4a LINE L1 -1254 5172 5107 262 287 61 33 chr11 40530467 40530648 -108252824 + L1ME4a LINE L1 5142 5327 -1099 258 248 8 48 chr11 40530890 40530957 -108252515 + L1 LINE L1 3176 3244 -2902 187 54 54 0 chr11 40530957 40530994 -108252478 + (TATAA)n Simple_repeat Simple_repeat 2 40 0 2306 158 31 14 chr11 40531001 40531420 -108252052 - MSTA LTR MaLR -2 426 1 258 248 8 48 chr11 40531420 40531469 -108252003 + L1 LINE L1 3250 3295 -2851 188 348 0 0 chr11 40531506 40531552 -108251920 + MIR SINE MIR 37 82 -180 303 247 45 45 chr11 40531556 40531645 -108251827 + MIR SINE MIR 57 145 -117 571 331 47 44 chr11 40531649 40532014 -108251458 - L2 LINE L2 -5 3308 2943 246 268 161 18 chr11 40532148 40532260 -108251212 - MIR SINE MIR -111 151 24 2482 115 8 16 chr11 40532441 40532815 -108250657 + THE1C LTR MaLR 5 375 0 191 204 20 0 chr11 40532840 40532889 -108250583 + (TA)n Simple_repeat Simple_repeat 1 50 0 2089 121 0 3 chr11 40532988 40533278 -108250194 - AluSq SINE Alu -14 299 11 291 248 10 30 chr11 40533527 40533628 -108249844 + (CATA)n Simple_repeat Simple_repeat 4 102 0 27 81 0 0 chr11 40533635 40533697 -108249775 + AT_rich Low_complexity Low_complexity 1 62 0 305 62 21 0 chr11 40534512 40534560 -108248912 + (TC)n Simple_repeat Simple_repeat 2 50 0 603 276 7 0 chr11 40534562 40534707 -108248765 - FRAM SINE Alu -33 143 1 27 49 0 0 chr11 40534784 40534825 -108248647 + AT_rich Low_complexity Low_complexity 1 41 0 453 257 56 32 chr11 40534827 40535111 -108248361 - L1M4 LINE L1 -758 5388 5098 418 380 24 5 chr11 40535143 40535553 -108247919 + L1ME4a LINE L1 5681 6098 -344 23 33 0 0 chr11 40535865 40535895 -108247577 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr11 40536262 40536292 -108247180 + (GA)n Simple_repeat Simple_repeat 1 30 0 214 244 0 0 chr11 40536309 40536354 -108247118 + GA-rich Low_complexity Low_complexity 1 45 0 381 43 0 0 chr11 40536632 40536679 -108246793 + (TA)n Simple_repeat Simple_repeat 1 47 0 309 314 58 29 chr11 40536692 40536829 -108246643 + L1ME4a LINE L1 6255 6395 -6 29 28 0 0 chr11 40537603 40537639 -108245833 + AT_rich Low_complexity Low_complexity 1 36 0 256 111 0 0 chr11 40537792 40537837 -108245635 + MER4-int LTR ERV1 1112 1156 -5442 216 0 0 0 chr11 40537839 40537863 -108245609 + (GA)n Simple_repeat Simple_repeat 1 24 0 1367 215 59 99 chr11 40538753 40539279 -108244193 - MLT1D LTR MaLR 0 505 1 503 332 62 16 chr11 40539395 40539639 -108243833 + MIR SINE MIR 7 261 -1 251 177 16 0 chr11 40539870 40539932 -108243540 + A-rich Low_complexity Low_complexity 5 67 0 1694 210 14 78 chr11 40540011 40540449 -108243023 - MSTB LTR MaLR -16 410 1 261 0 0 0 chr11 40540459 40540488 -108242984 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 243 311 34 8 chr11 40540527 40540646 -108242826 + MLT1H LTR MaLR 46 167 -382 304 58 19 19 chr11 40540777 40540829 -108242643 + (TA)n Simple_repeat Simple_repeat 2 53 0 3089 171 47 15 chr11 40541579 40542370 -108241102 + L1MA8 LINE L1 4668 5481 -762 985 153 0 55 chr11 40542379 40542562 -108240910 + AluSg/x SINE Alu 138 310 -2 3624 164 20 72 chr11 40542563 40543411 -108240061 + L1MA8 LINE L1 5484 6287 -4 237 227 0 15 chr11 40543790 40543856 -108239616 + (ATG)n Simple_repeat Simple_repeat 2 66 0 195 284 11 53 chr11 40543859 40543954 -108239518 - MIR SINE MIR 0 262 172 360 311 0 0 chr11 40543981 40544084 -108239388 - MIR SINE MIR -7 255 153 431 179 9 0 chr11 40544128 40544234 -108239238 + (TA)n Simple_repeat Simple_repeat 2 108 0 2345 228 62 41 chr11 40544353 40545361 -108238111 + L1M3f LINE L1 29 1168 -4160 689 246 30 62 chr11 40545361 40545649 -108237823 + LTR1 LTR ERV1 1 425 -563 4334 209 31 32 chr11 40545677 40547007 -108236465 - L1 LINE L1 -3831 3734 2404 1262 187 121 91 chr11 40547009 40547494 -108235978 - LTR1B LTR ERV1 0 1020 344 8417 210 26 25 chr11 40547500 40550448 -108233024 + L1M3f LINE L1 2500 5460 -868 1453 96 5 5 chr11 40550448 40550656 -108232816 + L1PA7 LINE L1 5641 5848 -306 194 135 27 27 chr11 40550713 40550787 -108232685 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 295 83 51 chr11 40551308 40551562 -108231910 + MIR SINE MIR 1 262 0 2564 48 3 0 chr11 40552195 40552504 -108230968 + AluY SINE Alu 2 311 0 258 277 93 54 chr11 40552652 40552984 -108230488 + L1M4 LINE L1 4509 4853 -1293 843 212 11 16 chr11 40553138 40553327 -108230145 + MER5A DNA MER1_type 1 188 -1 1305 233 52 40 chr11 40553449 40553852 -108229620 + MLT1C LTR MaLR 59 466 -1 596 264 6 25 chr11 40553897 40554056 -108229416 - MLT1J2 LTR MaLR -292 158 3 36 40 0 0 chr11 40555722 40555772 -108227700 + AT_rich Low_complexity Low_complexity 1 50 0 1859 164 10 0 chr11 40555887 40556186 -108227286 - AluSx SINE Alu -6 306 5 387 281 26 18 chr11 40556245 40556359 -108227113 + MLT1E LTR MaLR 7 121 -472 386 295 33 8 chr11 40556400 40556522 -108226950 + MLT1E LTR MaLR 119 243 -350 329 220 34 0 chr11 40556599 40556658 -108226814 + MLT1E1 LTR MaLR 280 340 -253 381 162 0 0 chr11 40556758 40556826 -108226646 + A-rich Low_complexity Low_complexity 1 68 0 520 135 250 7 chr11 40556841 40556981 -108226491 + MLT1E1 LTR MaLR 410 649 -5 457 296 37 25 chr11 40557666 40557828 -108225644 + Charlie1 DNA MER1_type 6 169 -2592 2636 118 47 7 chr11 40557862 40558287 -108225185 + L1PA15 LINE L1 5711 6152 -13 570 266 12 41 chr11 40558359 40558528 -108224944 + MER63A DNA MER1_type 47 210 0 356 197 15 0 chr11 40558554 40558620 -108224852 + Charlie1 DNA MER1_type 2693 2759 -2 1814 135 63 61 chr11 40558811 40559174 -108224298 + THE1B LTR MaLR 1 364 0 10820 116 11 1 chr11 40559174 40560739 -108222733 + THE1B-int LTR MaLR 1 1580 0 1750 104 61 29 chr11 40560739 40561018 -108222454 + THE1B LTR MaLR 1 288 -76 1562 196 44 22 chr11 40563985 40564352 -108219120 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr11 40564678 40564703 -108218769 + AT_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr11 40565041 40565089 -108218383 + AT_rich Low_complexity Low_complexity 1 48 0 291 308 216 13 chr11 40566183 40566410 -108217062 + L2 LINE L2 2622 2894 -420 712 136 8 30 chr11 40566600 40566732 -108216740 - AluJb SINE Alu -26 286 158 1336 168 102 71 chr11 40566732 40567206 -108216266 + LTR1B LTR ERV1 291 783 -2 1921 167 39 64 chr11 40567252 40567689 -108215783 - MSTA LTR MaLR -2 426 1 339 347 16 0 chr11 40567888 40568009 -108215463 - MLT1I LTR MaLR -248 161 39 2132 112 0 3 chr11 40568174 40568468 -108215004 - AluSg SINE Alu -17 293 1 394 311 33 28 chr11 40569247 40569427 -108214045 - MIR SINE MIR -62 200 20 318 50 0 0 chr11 40569535 40569575 -108213897 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 86 0 0 chr11 40569852 40569910 -108213562 + AT_rich Low_complexity Low_complexity 1 58 0 279 0 0 0 chr11 40569941 40569972 -108213500 + (T)n Simple_repeat Simple_repeat 1 31 0 297 371 82 35 chr11 40570482 40570797 -108212675 + L2 LINE L2 2981 3310 -3 198 0 0 0 chr11 40571168 40571190 -108212282 + (T)n Simple_repeat Simple_repeat 1 22 0 411 356 88 25 chr11 40572858 40573220 -108210252 + L2 LINE L2 2130 2514 -800 2083 119 7 0 chr11 40573687 40573982 -108209490 - AluSx SINE Alu -15 297 1 225 304 0 9 chr11 40573990 40574072 -108209400 - MIR SINE MIR -45 163 84 388 336 31 54 chr11 40575734 40575957 -108207515 + MIR SINE MIR 36 253 -9 3257 152 11 4 chr11 40577763 40578291 -108205181 - Tigger3b DNA MER2_type -1 1230 699 2317 164 36 5 chr11 40578574 40578989 -108204483 + MSTA LTR MaLR 1 428 0 449 235 22 22 chr11 40578990 40579126 -108204346 - L1ME1 LINE L1 -224 5942 5807 491 289 12 67 chr11 40579159 40579412 -108204060 - L1ME1 LINE L1 -340 5826 5588 1105 117 6 6 chr11 40579566 40579737 -108203735 - Tigger3b DNA MER2_type -718 513 343 197 163 20 0 chr11 40579738 40579787 -108203685 + (TA)n Simple_repeat Simple_repeat 2 51 0 1842 167 22 9 chr11 40579791 40580115 -108203357 - Tigger3b DNA MER2_type -902 329 2 377 195 0 26 chr11 40580115 40580191 -108203281 + MER21B LTR ERV1 17 90 -773 236 304 38 13 chr11 40580213 40580292 -108203180 + MER21B LTR ERV1 19 99 -764 21 57 0 0 chr11 40582291 40582326 -108201146 + AT_rich Low_complexity Low_complexity 1 35 0 476 32 16 0 chr11 40582341 40582403 -108201069 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 410 271 23 8 chr11 40583174 40583307 -108200165 + L1MD2 LINE L1 6208 6342 -17 1532 205 65 8 chr11 40583319 40583689 -108199783 + L1MC3 LINE L1 6707 7097 -688 253 273 11 11 chr11 40583689 40583777 -108199695 + MLT1F1 LTR MaLR 35 122 -445 431 240 30 0 chr11 40583781 40583881 -108199591 + L1MC3 LINE L1 7189 7291 -494 1672 197 61 54 chr11 40583881 40584344 -108199128 - MER66A LTR ERV1 0 601 101 1867 226 43 4 chr11 40584430 40584900 -108198572 + L1MC3 LINE L1 7288 7775 -10 240 35 0 0 chr11 40585001 40585030 -108198442 + (CA)n Simple_repeat Simple_repeat 2 30 0 192 158 0 0 chr11 40585034 40585072 -108198400 + GA-rich Low_complexity Low_complexity 1 38 0 269 271 85 25 chr11 40585183 40585301 -108198171 + MIR SINE MIR 112 236 -26 1170 253 97 67 chr11 40585496 40586094 -108197378 + MLT1G LTR MaLR 1 581 -9 250 85 21 21 chr11 40586155 40586202 -108197270 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 31 0 0 0 chr11 40586359 40586390 -108197082 + AT_rich Low_complexity Low_complexity 1 31 0 480 18 0 0 chr11 40587986 40588043 -108195429 + (TG)n Simple_repeat Simple_repeat 2 58 0 182 36 0 36 chr11 40588145 40588173 -108195299 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2479 183 41 18 chr11 40589555 40590352 -108193120 + L1MA9 LINE L1 4982 5785 -527 2166 164 79 33 chr11 40591218 40591588 -108191884 + L1MA9 LINE L1 5773 6172 -140 252 0 0 0 chr11 40591588 40591616 -108191856 + (CA)n Simple_repeat Simple_repeat 2 29 0 2166 164 79 33 chr11 40591616 40591727 -108191745 + L1MA9 LINE L1 6172 6276 -36 649 238 77 61 chr11 40591828 40592365 -108191107 - LTR48 LTR ERV1 0 787 3 378 322 154 0 chr11 40592459 40592602 -108190870 + MER5A DNA MER1_type 24 188 -1 306 0 0 0 chr11 40592675 40592709 -108190763 + (TTA)n Simple_repeat Simple_repeat 1 34 0 4701 72 14 0 chr11 40592710 40593336 -108190136 - L1PA7 LINE L1 -18 6136 5502 301 255 0 149 chr11 40593339 40593480 -108189992 - MIR SINE MIR -119 143 24 23 33 0 0 chr11 40593995 40594025 -108189447 + AT_rich Low_complexity Low_complexity 1 30 0 236 240 0 0 chr11 40596362 40596412 -108187060 - MIR SINE MIR -30 232 183 327 177 0 0 chr11 40596522 40596584 -108186888 + (CA)n Simple_repeat Simple_repeat 2 63 0 456 294 34 67 chr11 40597465 40597703 -108185769 - MIR SINE MIR -21 241 12 362 345 61 26 chr11 40597942 40598206 -108185266 - L1MC4 LINE L1 -43 7999 7727 2645 168 46 39 chr11 40598224 40598790 -108184682 - L1MB7 LINE L1 -23 6161 5592 395 248 62 55 chr11 40598799 40599073 -108184399 - L1MC5 LINE L1 -371 7590 7315 22 0 0 0 chr11 40600404 40600426 -108183046 + AT_rich Low_complexity Low_complexity 1 22 0 232 363 0 11 chr11 40600977 40601068 -108182404 - MIR3 SINE MIR -14 194 105 430 365 48 30 chr11 40601297 40601634 -108181838 + MLT1J LTR MaLR 45 387 -124 510 156 52 0 chr11 40602180 40602276 -108181196 - L1PA15 LINE L1 -4 6161 6061 296 164 0 0 chr11 40602485 40602540 -108180932 + L1MC/D LINE L1 5768 5822 -1986 231 188 0 0 chr11 40603574 40603622 -108179850 + (TAA)n Simple_repeat Simple_repeat 2 49 0 494 144 66 29 chr11 40603987 40604330 -108179142 + (TA)n Simple_repeat Simple_repeat 1 355 0 213 207 36 27 chr11 40604283 40604394 -108179078 + (TTATA)n Simple_repeat Simple_repeat 5 116 0 * 253 112 45 62 chr11 40604397 40604576 -108178896 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 46 45 0 0 chr11 40604592 40604659 -108178813 + AT_rich Low_complexity Low_complexity 1 67 0 198 211 30 6 chr11 40604669 40604835 -108178637 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 180 146 76 23 chr11 40604796 40604967 -108178505 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 29 0 0 0 chr11 40604974 40605003 -108178469 + AT_rich Low_complexity Low_complexity 1 29 0 220 162 66 0 chr11 40605015 40605182 -108178290 + (TA)n Simple_repeat Simple_repeat 1 178 0 31 44 0 0 chr11 40605182 40605227 -108178245 + AT_rich Low_complexity Low_complexity 1 45 0 559 305 52 0 chr11 40605371 40605604 -108177868 + MER46C DNA MER2_type 79 323 -15 245 368 40 24 chr11 40605881 40606131 -108177341 + MIR SINE MIR 5 258 -4 853 111 15 7 chr11 40606894 40607029 -108176443 - L1PB2 LINE L1 0 6151 6016 11576 231 32 20 chr11 40607629 40612331 -108171141 + L1PB4 LINE L1 1705 6487 -372 270 0 0 0 chr11 40612331 40612361 -108171111 + (TG)n Simple_repeat Simple_repeat 2 31 0 11576 231 32 20 chr11 40612361 40612739 -108170733 + L1PB4 LINE L1 6487 6859 0 2647 32 3 0 chr11 40613016 40613326 -108170146 - AluY SINE Alu 0 311 1 239 371 0 0 chr11 40615491 40615561 -108167911 + MIR SINE MIR 37 106 -102 23 0 0 0 chr11 40615666 40615689 -108167783 + AT_rich Low_complexity Low_complexity 1 23 0 327 157 25 25 chr11 40615974 40616095 -108167377 + (TA)n Simple_repeat Simple_repeat 1 121 0 198 220 0 0 chr11 40616158 40616217 -108167255 + (TA)n Simple_repeat Simple_repeat 1 59 0 357 283 8 0 chr11 40616244 40616364 -108167108 + (TA)n Simple_repeat Simple_repeat 1 121 0 2267 75 23 3 chr11 40616445 40616752 -108166720 + L1PA7 LINE L1 5837 6149 -5 5091 105 1 7 chr11 40616764 40617536 -108165936 + L1PA8 LINE L1 5417 6184 0 336 309 27 27 chr11 40617571 40617720 -108165752 - L1ME LINE L1 -540 5581 5433 328 298 99 20 chr11 40618546 40618697 -108164775 + MIR SINE MIR 29 191 -71 214 207 0 86 chr11 40618707 40618765 -108164707 + MER5B DNA MER1_type 1 53 -125 392 296 142 22 chr11 40620584 40620810 -108162662 - MLT1J1 LTR MaLR -127 319 67 321 315 0 0 chr11 40620899 40620991 -108162481 + MIR SINE MIR 158 249 -13 322 345 35 6 chr11 40621381 40621552 -108161920 - MLT1L LTR MaLR -342 273 98 365 375 69 30 chr11 40621872 40622235 -108161237 + L2 LINE L2 2937 3313 0 3280 197 30 79 chr11 40622249 40623267 -108160205 - LTR5 LTR ERVK 0 969 1 1989 116 10 0 chr11 40623388 40623680 -108159792 - AluY SINE Alu 0 311 17 22 72 0 36 chr11 40623780 40623863 -108159609 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr11 40623975 40623996 -108159476 + AT_rich Low_complexity Low_complexity 1 21 0 584 0 28 0 chr11 40624668 40624739 -108158733 + (TTATG)n Simple_repeat Simple_repeat 3 75 0 1259 235 35 25 chr11 40624796 40625111 -108158361 + MLT1E LTR MaLR 276 593 0 25 51 0 0 chr11 40625391 40625430 -108158042 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 40625481 40625502 -108157970 + AT_rich Low_complexity Low_complexity 1 21 0 284 281 24 84 chr11 40626020 40626187 -108157285 + L2 LINE L2 3142 3298 -15 381 144 38 30 chr11 40628332 40628464 -108155008 + (TA)n Simple_repeat Simple_repeat 1 133 0 301 143 0 20 chr11 40628527 40628576 -108154896 - MIR3 SINE MIR -13 195 148 422 160 8 48 chr11 40629183 40629308 -108154164 + CT-rich Low_complexity Low_complexity 1 120 0 191 219 301 14 chr11 40629544 40629617 -108153855 - MIR3 SINE MIR -103 105 12 847 194 13 129 chr11 40630086 40630396 -108153076 + L1MC5 LINE L1 6682 6955 -1006 1719 206 20 43 chr11 40631795 40632188 -108151284 + MLT1B LTR MaLR 1 384 -6 2370 153 41 2 chr11 40632421 40632833 -108150639 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr11 40632991 40633014 -108150458 + AT_rich Low_complexity Low_complexity 1 23 0 1908 177 61 54 chr11 40633799 40634438 -108149034 - MER39 LTR ERV1 0 707 1 244 229 0 0 chr11 40635178 40635226 -108148246 + MIR SINE MIR 71 118 -144 22 56 0 0 chr11 40635276 40635312 -108148160 + AT_rich Low_complexity Low_complexity 1 36 0 926 343 119 48 chr11 40635395 40635829 -108147643 - L2 LINE L2 -199 3114 2712 738 165 32 6 chr11 40635829 40635987 -108147485 + L1MA8 LINE L1 6125 6286 -5 926 343 119 48 chr11 40635987 40636460 -108147012 - L2 LINE L2 -601 2712 2128 1123 203 127 41 chr11 40636460 40636532 -108146940 - MER2 DNA MER2_type 0 344 280 234 0 0 0 chr11 40636532 40636558 -108146914 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1123 203 127 41 chr11 40636558 40636801 -108146671 - MER2 DNA MER2_type -64 280 2 926 343 119 48 chr11 40636801 40637019 -108146453 - L2 LINE L2 -1185 2128 1927 1272 255 48 101 chr11 40637126 40637690 -108145782 - MLT1F LTR MaLR -8 534 1 889 263 76 113 chr11 40637874 40638468 -108145004 - MER21B LTR ERV1 -270 593 22 2496 188 8 23 chr11 40641058 40641543 -108141929 + MER66B LTR ERV1 9 486 0 213 295 0 0 chr11 40642306 40642367 -108141105 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 534 253 58 86 chr11 40642791 40643048 -108140424 - MIR SINE MIR -1 261 12 255 305 124 33 chr11 40643312 40643522 -108139950 + L2 LINE L2 2638 2866 -448 183 348 57 69 chr11 40643597 40643717 -108139755 + L2 LINE L2 2930 3050 -263 461 328 16 0 chr11 40643717 40643900 -108139572 + MER5A DNA MER1_type 1 186 -3 183 348 57 69 chr11 40643900 40644026 -108139446 + L2 LINE L2 3050 3173 -140 362 200 0 0 chr11 40644988 40645053 -108138419 - MER5A DNA MER1_type 0 189 125 3064 134 53 36 chr11 40645053 40645657 -108137815 + LTR18B LTR ERVL 1 614 0 1438 201 47 21 chr11 40645678 40646110 -108137362 + HERVL18 LTR ERVL 19 666 -5381 1213 187 23 18 chr11 40646211 40646511 -108136961 + HERVL18 LTR ERVL 2119 2477 -3570 * 1943 209 5 29 chr11 40646487 40646865 -108136607 + HERVL18 LTR ERVL 2720 3088 -2959 * 3403 177 6 0 chr11 40646856 40647398 -108136074 + HERVL18 LTR ERVL 2947 3491 -2556 2791 128 129 27 chr11 40647557 40648114 -108135358 + LTR18B LTR ERVL 1 614 0 536 246 35 0 chr11 40648114 40648228 -108135244 - MER5A DNA MER1_type -60 129 12 707 128 0 0 chr11 40648363 40648472 -108135000 - L1PB1 LINE L1 -3 6148 6040 212 0 36 0 chr11 40648510 40648538 -108134934 + (CAAAAA)n Simple_repeat Simple_repeat 5 33 0 304 318 150 6 chr11 40649993 40650166 -108133306 - L3b LINE CR1 -277 1306 1109 21 36 0 0 chr11 40650700 40650728 -108132744 + AT_rich Low_complexity Low_complexity 1 28 0 2183 206 63 12 chr11 40651320 40651830 -108131642 - L1MA8 LINE L1 -28 6263 5728 316 241 139 15 chr11 40652068 40652205 -108131267 + L1MB8 LINE L1 5941 6094 -84 7425 34 2 6 chr11 40652212 40653353 -108130119 + L1PA3 LINE L1 5056 6155 0 2215 187 31 39 chr11 40653498 40654011 -108129461 - LTR22 LTR ERVK 0 509 1 201 259 17 17 chr11 40654055 40654113 -108129359 + GA-rich Low_complexity Low_complexity 3 60 0 643 220 19 16 chr11 40654532 40654671 -108128801 + L1MA8 LINE L1 6077 6224 -76 204 40 0 0 chr11 40654671 40654696 -108128776 + (TG)n Simple_repeat Simple_repeat 2 26 0 643 220 19 16 chr11 40654696 40654748 -108128724 + L1MA8 LINE L1 6224 6274 -26 504 310 38 5 chr11 40655065 40655280 -108128192 + MLT2E LTR ERVL 1 226 -402 605 259 17 97 chr11 40655445 40655735 -108127737 - MER93b LTR ERV1 -87 286 20 1558 198 40 98 chr11 40655887 40656297 -108127175 + MLT1C LTR MaLR 17 397 -70 2103 124 51 23 chr11 40656297 40656651 -108126821 - THE1B LTR MaLR 0 364 1 1558 198 40 98 chr11 40656651 40656719 -108126753 + MLT1C LTR MaLR 397 467 0 1619 210 79 51 chr11 40657023 40657514 -108125958 - MLT1D LTR MaLR 0 505 1 234 330 100 10 chr11 40659877 40659977 -108123495 + MIR3 SINE MIR 75 183 -25 1760 154 162 11 chr11 40660389 40660760 -108122712 + MSTA LTR MaLR 2 428 0 5246 204 66 31 chr11 40660762 40660981 -108122491 + MSTA-int LTR MaLR 3 213 -1438 1917 153 137 16 chr11 40660981 40661361 -108122111 - MSTA LTR MaLR 0 428 3 5246 204 66 31 chr11 40661361 40662005 -108121467 + MSTA-int LTR MaLR 213 920 -731 1825 163 10 47 chr11 40662005 40662392 -108121080 + THE1C LTR MaLR 1 373 -2 5246 204 66 31 chr11 40662392 40662693 -108120779 + MSTA-int LTR MaLR 920 1209 -442 29 28 0 0 chr11 40662724 40662760 -108120712 + AT_rich Low_complexity Low_complexity 1 36 0 378 238 141 13 chr11 40663280 40663507 -108119965 - MER69 DNA AcHobo -108 2418 2163 232 233 0 0 chr11 40663642 40663685 -108119787 + (CA)n Simple_repeat Simple_repeat 2 44 0 440 312 174 36 chr11 40663701 40663954 -108119518 - MER69 DNA AcHobo -938 288 1 21 0 0 0 chr11 40664518 40664539 -108118933 + AT_rich Low_complexity Low_complexity 1 21 0 2485 137 0 11 chr11 40666357 40666736 -108116736 + THE1C LTR MaLR 1 375 0 2176 100 6 13 chr11 40667747 40668058 -108115414 - AluSc SINE Alu 0 309 1 295 345 153 27 chr11 40668906 40669129 -108114343 + MIR SINE MIR 12 262 0 1411 219 48 11 chr11 40669151 40669503 -108113969 + MLT1A1 LTR MaLR 1 365 0 202 242 16 0 chr11 40669808 40669870 -108113602 + (TA)n Simple_repeat Simple_repeat 1 63 0 34 0 0 0 chr11 40670103 40670137 -108113335 + AT_rich Low_complexity Low_complexity 1 34 0 2077 120 7 3 chr11 40670799 40671107 -108112365 - AluSc SINE Alu 0 309 1 263 297 112 48 chr11 40671647 40671896 -108111576 + L1M4b LINE L1 12 276 -6583 720 300 46 40 chr11 40671946 40672466 -108111006 + L1M4b LINE L1 2021 2543 -4595 418 122 11 11 chr11 40672614 40672704 -108110768 + (TA)n Simple_repeat Simple_repeat 2 91 0 999 87 16 0 chr11 40672985 40673112 -108110360 + AluSc SINE Alu 1 129 -180 290 265 10 0 chr11 40673306 40673404 -108110068 + L1M4b LINE L1 2940 3038 -4100 1026 180 15 5 chr11 40673447 40673653 -108109819 + L1MA6 LINE L1 6093 6300 0 321 329 13 0 chr11 40673674 40673829 -108109643 + L1M4b LINE L1 2996 3152 -3805 525 285 60 4 chr11 40673829 40674064 -108109408 - L1M4 LINE L1 -5157 1385 1138 323 268 154 8 chr11 40674083 40674206 -108109266 + MIR SINE MIR 119 259 -3 2129 106 7 0 chr11 40675232 40675524 -108107948 - AluSq SINE Alu -19 294 1 1618 187 82 0 chr11 40675570 40675886 -108107586 + L1MC1 LINE L1 5986 6327 -6 314 339 0 36 chr11 40676172 40676284 -108107188 + MIR3 SINE MIR 47 154 -54 383 260 10 19 chr11 40676498 40676602 -108106870 + MIR SINE MIR 74 176 -86 24 32 0 0 chr11 40676766 40676797 -108106675 + AT_rich Low_complexity Low_complexity 1 31 0 2000 131 3 13 chr11 40677254 40677567 -108105905 + AluSx SINE Alu 2 311 -1 22 70 0 0 chr11 40677612 40677655 -108105817 + AT_rich Low_complexity Low_complexity 1 43 0 510 341 25 40 chr11 40677736 40678059 -108105413 + L1MEc LINE L1 143 460 -5936 1086 282 115 27 chr11 40678089 40678966 -108104506 + L1MEc LINE L1 816 1769 -4627 2117 214 62 45 chr11 40679034 40679659 -108103813 + L1MC3 LINE L1 7133 7768 -17 2258 271 63 17 chr11 40679670 40681041 -108102431 + L1MEc LINE L1 1850 3236 -2979 954 257 192 21 chr11 40681370 40681751 -108101721 + LTR40b LTR ERVL 8 453 -9 2711 165 23 4 chr11 40681751 40682273 -108101199 - L1MA8 LINE L1 -1 6290 5759 1810 201 17 8 chr11 40682435 40682794 -108100678 - MLT1A1 LTR MaLR -1 364 3 289 340 57 67 chr11 40682927 40683224 -108100248 - L2 LINE L2 -2818 496 203 314 239 0 15 chr11 40683273 40683340 -108100132 + MER8 DNA MER2_type 1 66 -173 804 198 68 19 chr11 40683607 40683769 -108099703 + MER8 DNA MER2_type 70 239 0 287 19 77 0 chr11 40685237 40685289 -108098183 + (TA)n Simple_repeat Simple_repeat 1 56 0 392 272 29 10 chr11 40685627 40685730 -108097742 - L2 LINE L2 -10 3303 3199 568 235 7 7 chr11 40686222 40686375 -108097097 + L1MA5 LINE L1 6148 6300 0 186 43 0 0 chr11 40686676 40686699 -108096773 + (CA)n Simple_repeat Simple_repeat 2 24 0 442 304 99 30 chr11 40686978 40687179 -108096293 + HAL1 LINE L1 1260 1474 -1033 2237 62 0 28 chr11 40687511 40687849 -108095623 - AluY SINE Alu 0 330 1 1717 110 78 41 chr11 40688866 40689246 -108094226 + L1MA5A LINE L1 5963 6354 0 237 316 63 0 chr11 40689496 40689575 -108093897 + L2 LINE L2 3185 3268 -4 22 0 0 0 chr11 40689813 40689835 -108093637 + AT_rich Low_complexity Low_complexity 1 22 0 183 308 0 0 chr11 40691599 40691638 -108091834 + MIR SINE MIR 16 54 -208 274 327 37 31 chr11 40691710 40691872 -108091600 + MIR SINE MIR 96 258 -4 348 90 0 0 chr11 40691928 40691983 -108091489 - Alu SINE Alu -261 47 2 317 265 12 48 chr11 40691989 40692072 -108091400 + L2 LINE L2 3193 3272 0 259 318 77 46 chr11 40692185 40692380 -108091092 + MIR SINE MIR 61 261 -1 1822 133 31 3 chr11 40692740 40693026 -108090446 - AluSx SINE Alu -18 294 1 5978 130 22 17 chr11 40693935 40694899 -108088573 - LTR5 LTR ERVK 0 969 1 22 0 0 0 chr11 40694948 40694970 -108088502 + AT_rich Low_complexity Low_complexity 1 22 0 260 191 56 56 chr11 40695684 40695773 -108087699 + MER61E LTR ERV1 1 89 -480 * 1982 218 37 88 chr11 40695743 40696421 -108087051 + LTR19C LTR ERV1 137 779 0 308 242 40 20 chr11 40697138 40697237 -108086235 - MER77 LTR ERV1 -39 566 466 2008 209 32 7 chr11 40697298 40697709 -108085763 + MSTB LTR MaLR 1 421 -5 652 298 19 66 chr11 40697711 40698030 -108085442 - MER77 LTR ERV1 -248 357 54 1003 165 151 33 chr11 40698092 40698164 -108085308 + MER49 LTR ERV1 1 63 -860 1840 159 3 25 chr11 40698164 40698478 -108084994 - AluSx SINE Alu -5 307 1 1003 165 151 33 chr11 40698478 40698693 -108084779 + MER49 LTR ERV1 63 283 -640 351 159 35 29 chr11 40698689 40698801 -108084671 + MER4E LTR ERV1 64 284 -588 * 1650 185 16 41 chr11 40698795 40699162 -108084310 + MER4D LTR ERV1 544 901 -2 268 131 16 16 chr11 40699204 40699265 -108084207 + CT-rich Low_complexity Low_complexity 3 63 0 189 121 0 0 chr11 40699710 40699743 -108083729 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1975 168 80 5 chr11 40700085 40700460 -108083012 - MER57A LTR ERV1 0 403 1 262 322 18 28 chr11 40700779 40700901 -108082571 + MIR SINE MIR 30 141 -67 409 303 86 17 chr11 40701217 40701392 -108082080 - MER63A DNA MER1_type -19 191 5 291 28 0 0 chr11 40701696 40701732 -108081740 + (TG)n Simple_repeat Simple_repeat 2 37 0 204 353 29 0 chr11 40701869 40701937 -108081535 - L2 LINE L2 -638 2676 2607 204 135 0 0 chr11 40701990 40702027 -108081445 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 1580 214 0 22 chr11 40702170 40702488 -108080984 - AluJo SINE Alu 0 312 1 3327 120 26 4 chr11 40702779 40703279 -108080193 - MER9 LTR ERVK 0 511 1 259 311 98 8 chr11 40703428 40703550 -108079922 - MIR3 SINE MIR -5 203 71 228 35 0 0 chr11 40704754 40704783 -108078689 + (CA)n Simple_repeat Simple_repeat 2 30 0 427 248 18 37 chr11 40704809 40704918 -108078554 - L2 LINE L2 0 3313 3207 423 277 104 59 chr11 40705137 40705357 -108078115 - MIR SINE MIR -30 232 3 27 49 0 0 chr11 40706761 40706802 -108076670 + AT_rich Low_complexity Low_complexity 1 41 0 2023 148 0 3 chr11 40706875 40707185 -108076287 - AluSg SINE Alu -1 309 1 264 362 141 7 chr11 40707558 40707707 -108075765 - MIR SINE MIR -57 205 37 429 268 38 44 chr11 40707708 40707891 -108075581 + MER117 DNA MER1_type 6 187 -10 192 125 0 0 chr11 40708437 40708469 -108075003 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 1052 215 114 57 chr11 40709438 40709548 -108073924 + MLT1H-int LTR MaLR 997 1099 -272 2115 131 3 0 chr11 40709548 40709854 -108073618 + AluSg SINE Alu 1 307 -3 1052 215 114 57 chr11 40709854 40710059 -108073413 + MLT1H-int LTR MaLR 1099 1330 -41 233 170 75 19 chr11 40710063 40710116 -108073356 + MLT1B LTR MaLR 203 258 -132 209 327 119 39 chr11 40710443 40710703 -108072769 - L2 LINE L2 -789 2525 2245 409 222 44 33 chr11 40710816 40710996 -108072476 - Charlie4 DNA MER1_type -40 1921 1740 766 151 0 8 chr11 40711015 40711141 -108072331 + FRAM SINE Alu 31 155 -21 367 213 39 150 chr11 40711148 40711355 -108072117 - Charlie4 DNA MER1_type -1698 263 80 212 0 36 0 chr11 40711357 40711385 -108072087 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 198 329 61 12 chr11 40711684 40711766 -108071706 + MIR SINE MIR 64 149 -113 745 293 159 30 chr11 40711800 40711987 -108071485 + MLT1H LTR MaLR 43 204 -345 4234 128 3 5 chr11 40711987 40712621 -108070851 - MER51A LTR ERV1 -1 633 1 745 293 159 30 chr11 40712621 40712866 -108070606 + MLT1H LTR MaLR 204 531 -18 1949 126 0 11 chr11 40712969 40713306 -108070166 + AluSq SINE Alu 1 334 0 427 20 0 0 chr11 40713255 40713336 -108070136 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 2355 179 2 20 chr11 40713347 40713789 -108069683 + Tigger2a DNA MER2_type 1 434 0 240 235 31 102 chr11 40714031 40714129 -108069343 - MIR SINE MIR 0 262 172 306 277 89 9 chr11 40714553 40714665 -108068807 + MIR SINE MIR 111 231 -31 216 388 30 37 chr11 40714877 40715011 -108068461 + MIR3 SINE MIR 24 156 -52 21 0 0 0 chr11 40715852 40715873 -108067599 + AT_rich Low_complexity Low_complexity 1 21 0 763 281 40 9 chr11 40716466 40716694 -108066778 - MLT1G LTR MaLR 0 590 356 223 303 30 0 chr11 40716714 40716813 -108066659 + MIR SINE MIR 104 205 -57 428 280 149 36 chr11 40717043 40717211 -108066261 + MIR SINE MIR 4 190 -72 45 102 0 0 chr11 40718037 40718194 -108065278 + AT_rich Low_complexity Low_complexity 1 157 0 1497 198 7 0 chr11 40718695 40718993 -108064479 + L1PA16 LINE L1 5866 6165 -1 9024 22 0 0 chr11 40719434 40721257 -108062215 - L1PA3 LINE L1 -8 6147 4325 1425 204 47 62 chr11 40722906 40723308 -108060164 + MER57A LTR ERV1 8 403 0 21 0 0 0 chr11 40724267 40724288 -108059184 + AT_rich Low_complexity Low_complexity 1 21 0 267 192 39 0 chr11 40724751 40724829 -108058643 + (TA)n Simple_repeat Simple_repeat 1 81 0 210 191 0 0 chr11 40726068 40726115 -108057357 + (TG)n Simple_repeat Simple_repeat 1 47 0 3106 248 72 25 chr11 40726540 40727823 -108055649 + L1MDa LINE L1 3 1398 -5142 2792 189 97 11 chr11 40728384 40729035 -108054437 + MER67C LTR ERV1 4 710 0 5308 58 1 4 chr11 40731720 40732386 -108051086 + L1PA7 LINE L1 5477 6142 -12 233 29 29 0 chr11 40732386 40732420 -108051052 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 5726 159 56 31 chr11 40732865 40733039 -108050433 - L1MA2 LINE L1 -5 6299 6131 1884 152 39 15 chr11 40733039 40733374 -108050098 + MER61A LTR ERV1 1 343 0 5726 159 56 31 chr11 40733374 40735311 -108048161 - L1MA2 LINE L1 -173 6131 4127 2026 93 6 40 chr11 40735857 40736179 -108047293 + AluY SINE Alu 1 311 0 189 0 0 0 chr11 40736801 40736822 -108046650 + (T)n Simple_repeat Simple_repeat 1 21 0 249 289 24 12 chr11 40737353 40737436 -108046036 - MIR SINE MIR -125 137 54 2541 225 54 21 chr11 40738970 40739601 -108043871 - MER82 DNA MER2_type 0 653 2 283 312 0 26 chr11 40739820 40739897 -108043575 - L2 LINE L2 -4 3309 3235 6298 199 156 22 chr11 40740905 40742453 -108041019 + MER52A LTR ERV1 1 1755 0 186 242 0 0 chr11 40742683 40742716 -108040756 - MIR SINE MIR -194 68 36 1323 171 20 97 chr11 40742770 40743120 -108040352 + MLT1A2 LTR MaLR 4 326 -48 972 39 0 23 chr11 40744203 40744333 -108039139 + L1PA5 LINE L1 6028 6154 0 303 318 135 14 chr11 40744952 40745100 -108038372 - MIR SINE MIR -44 218 53 225 87 43 22 chr11 40745141 40745187 -108038285 + (TTTAA)n Simple_repeat Simple_repeat 4 50 0 207 179 0 0 chr11 40745794 40745833 -108037639 + T-rich Low_complexity Low_complexity 2 40 0 1667 174 158 13 chr11 40747329 40747703 -108035769 + MSTA LTR MaLR 1 428 0 238 254 51 0 chr11 40747885 40747944 -108035528 - MER63A DNA MER1_type 0 210 149 36 62 0 0 chr11 40748802 40748866 -108034606 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr11 40749214 40749242 -108034230 + AT_rich Low_complexity Low_complexity 1 28 0 384 252 197 8 chr11 40749730 40749857 -108033615 - MER5A DNA MER1_type 0 189 39 4084 140 51 3 chr11 40751103 40751854 -108031618 - L1PA16 LINE L1 -172 5994 5211 337 178 29 14 chr11 40751854 40751997 -108031475 + CT-rich Low_complexity Low_complexity 1 145 0 186 43 0 0 chr11 40751997 40752020 -108031452 + (CATA)n Simple_repeat Simple_repeat 1 23 0 264 30 0 0 chr11 40752038 40752071 -108031401 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 764 167 29 0 chr11 40752561 40752811 -108030661 + CT-rich Low_complexity Low_complexity 1 257 0 1491 119 26 63 chr11 40752811 40753079 -108030393 - AluSp SINE Alu -12 301 44 7466 214 25 6 chr11 40753079 40754776 -108028696 - L1PA16 LINE L1 -915 5231 3502 289 313 81 0 chr11 40755316 40755415 -108028057 + MIR3 SINE MIR 54 160 -48 236 368 98 15 chr11 40755476 40755609 -108027863 - L2 LINE L2 -4 3268 3125 8209 64 5 8 chr11 40755680 40756755 -108026717 + MER11C LTR ERVK 1 1071 0 350 217 116 29 chr11 40757501 40757639 -108025833 + MER3 DNA MER1_type 4 153 -56 22 0 0 0 chr11 40758006 40758028 -108025444 + AT_rich Low_complexity Low_complexity 1 22 0 199 111 22 22 chr11 40758155 40758200 -108025272 + (TAA)n Simple_repeat Simple_repeat 1 45 0 295 293 65 16 chr11 40758381 40758504 -108024968 - MLT1K LTR MaLR -62 526 398 2245 257 66 30 chr11 40758960 40759780 -108023692 - L1MD3 LINE L1 -1 7994 7146 333 47 0 0 chr11 40760836 40760879 -108022593 + (TG)n Simple_repeat Simple_repeat 2 44 0 13534 200 16 3 chr11 40762125 40766108 -108017364 + L1PB1 LINE L1 2114 6149 -2 22 80 0 0 chr11 40766790 40766840 -108016632 + AT_rich Low_complexity Low_complexity 1 50 0 217 340 21 21 chr11 40767212 40767309 -108016163 - MIR SINE MIR -74 188 92 4847 163 13 26 chr11 40767367 40768224 -108015248 - HSMAR2 DNA Mariner -101 1201 356 15729 178 19 4 chr11 40768261 40772125 -108011347 - L1PA11 LINE L1 -15 7597 3669 3073 265 39 54 chr11 40772180 40772489 -108010983 - L1PA11 LINE L1 -4877 2707 2395 195 69 0 0 chr11 40772489 40772518 -108010954 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3073 265 39 54 chr11 40772518 40773564 -108009908 - L1PA11 LINE L1 -5189 2395 9 2156 150 22 0 chr11 40773570 40773931 -108009541 - HSMAR2 DNA Mariner -933 369 1 23 0 0 0 chr11 40774588 40774611 -108008861 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 40775988 40776011 -108007461 + AT_rich Low_complexity Low_complexity 1 23 0 429 282 65 60 chr11 40776015 40776231 -108007241 - MIR SINE MIR 0 262 46 207 289 92 13 chr11 40776325 40776401 -108007071 - MIR SINE MIR -133 129 48 31 26 0 0 chr11 40776668 40776706 -108006766 + AT_rich Low_complexity Low_complexity 1 38 0 199 383 90 25 chr11 40777347 40777702 -108005770 + L2 LINE L2 1831 2208 -1106 610 299 185 40 chr11 40777719 40778163 -108005309 - L2 LINE L2 -2 3311 2804 334 326 107 46 chr11 40778174 40778634 -108004838 - MLT1J LTR MaLR 0 511 24 2572 105 0 0 chr11 40778853 40779204 -108004268 + THE1A LTR MaLR 2 352 -3 11103 107 4 6 chr11 40779204 40779892 -108003580 + THE1A-int LTR MaLR 8 695 -885 1115 193 143 69 chr11 40779892 40780311 -108003161 - LTR7 LTR ERV1 0 450 1 11103 107 4 6 chr11 40780311 40781197 -108002275 + THE1A-int LTR MaLR 695 1580 0 2351 112 23 0 chr11 40781197 40781544 -108001928 + THE1A LTR MaLR 1 355 0 284 389 11 11 chr11 40781562 40781737 -108001735 + L2 LINE L2 2203 2377 -937 275 57 0 0 chr11 40781750 40781785 -108001687 + MADE1 DNA Mariner 46 80 0 22 35 0 0 chr11 40781893 40781922 -108001550 + AT_rich Low_complexity Low_complexity 1 29 0 220 296 11 0 chr11 40781987 40782075 -108001397 + (CATA)n Simple_repeat Simple_repeat 4 92 0 1550 240 35 6 chr11 40782078 40782451 -108001021 - MLT2D LTR ERVL -40 480 1 1394 220 16 0 chr11 40782457 40782766 -108000706 - L1MC/D LINE L1 -2015 5770 5457 1592 220 28 21 chr11 40782767 40783199 -108000273 - L1MC/D LINE L1 -1127 5019 4585 300 186 0 0 chr11 40783259 40783318 -108000154 + (CTA)n Simple_repeat Simple_repeat 2 60 0 185 380 40 0 chr11 40783327 40783427 -108000045 + L2 LINE L2 2571 2674 -640 228 341 12 0 chr11 40783849 40783931 -107999541 + L2 LINE L2 3229 3311 -2 297 259 14 7 chr11 40785262 40785358 -107998114 + (TA)n Simple_repeat Simple_repeat 2 101 -44 1378 227 59 41 chr11 40785358 40785746 -107997726 + MSTD LTR MaLR 1 395 -1 297 259 14 7 chr11 40785746 40785792 -107997680 + (TA)n Simple_repeat Simple_repeat 101 145 0 1166 228 38 8 chr11 40786355 40786618 -107996854 + AluJo SINE Alu 5 275 -37 25 0 0 0 chr11 40786756 40786781 -107996691 + AT_rich Low_complexity Low_complexity 1 25 0 9848 189 65 34 chr11 40786980 40789328 -107994144 + L1M4c LINE L1 4 2424 -3960 1058 244 48 0 chr11 40789330 40789412 -107994060 + AluJb SINE Alu 38 115 -197 360 0 0 0 chr11 40789412 40789452 -107994020 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1058 244 48 0 chr11 40789452 40789599 -107993873 + AluJb SINE Alu 115 278 -34 600 309 28 19 chr11 40789619 40789939 -107993533 + L1M4c LINE L1 2412 2734 -3648 * 2945 202 57 3 chr11 40789924 40790593 -107992879 + L1MB3 LINE L1 5479 6183 0 318 345 41 35 chr11 40790670 40790841 -107992631 - MER5A DNA MER1_type -1 188 17 25 0 0 0 chr11 40791045 40791070 -107992402 + AT_rich Low_complexity Low_complexity 1 25 0 1983 129 0 7 chr11 40791647 40791965 -107991507 + AluSx SINE Alu 1 312 0 181 309 55 0 chr11 40793361 40793416 -107990056 - L2 LINE L2 -8 3305 3248 411 322 103 21 chr11 40793880 40794113 -107989359 - MLT1K LTR MaLR -11 577 326 277 388 26 0 chr11 40795740 40795892 -107987580 + MIR SINE MIR 75 230 -32 913 180 92 15 chr11 40796019 40796253 -107987219 + L1MA6 LINE L1 6047 6300 0 1715 163 32 0 chr11 40796254 40796536 -107986936 - AluSx SINE Alu -21 291 1 29 28 0 0 chr11 40796857 40796893 -107986579 + AT_rich Low_complexity Low_complexity 1 36 0 267 370 110 0 chr11 40797032 40797178 -107986294 - MIR3 SINE MIR -18 190 29 310 261 0 0 chr11 40797242 40797307 -107986165 + MIR SINE MIR 113 177 -85 1437 207 24 52 chr11 40797309 40797469 -107986003 - MLT1A2 LTR MaLR -4 370 207 2037 141 3 0 chr11 40797469 40797773 -107985699 - AluSx SINE Alu -7 305 1 1437 207 24 52 chr11 40797773 40797991 -107985481 - MLT1A2 LTR MaLR -167 207 1 243 270 56 22 chr11 40797991 40798080 -107985392 + MIR SINE MIR 171 262 0 239 301 41 24 chr11 40800285 40800408 -107983064 + MIR SINE MIR 121 245 -17 398 214 61 10 chr11 40800425 40800523 -107982949 + MIR SINE MIR 160 262 0 1245 255 39 11 chr11 40800782 40801163 -107982309 + L1M4 LINE L1 3729 4120 -2026 415 224 0 0 chr11 40801188 40801264 -107982208 - FRAM SINE Alu -68 98 23 707 149 2 128 chr11 40801289 40801363 -107982109 - L1MD1 LINE L1 -1 6358 6276 2052 131 3 6 chr11 40801363 40801677 -107981795 + AluSp SINE Alu 1 313 0 707 149 2 128 chr11 40801677 40801688 -107981784 - L1MD1 LINE L1 -83 6276 6265 1223 94 0 6 chr11 40801688 40801869 -107981603 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 707 149 2 128 chr11 40801869 40801979 -107981493 - L1MD1 LINE L1 -94 6265 6071 865 227 60 14 chr11 40802044 40802326 -107981146 - L1M4 LINE L1 -3537 2609 2315 10099 188 24 7 chr11 40802345 40805580 -107977892 - L1MA3 LINE L1 -5 7719 4430 1914 104 7 174 chr11 40805581 40805994 -107977478 + LTR14B LTR ERVK 1 608 0 1271 220 39 3 chr11 40806000 40806305 -107977167 - L1MA3 LINE L1 -3135 4430 4115 498 204 35 0 chr11 40806315 40806428 -107977044 - L1MA3 LINE L1 -7440 125 9 27 87 0 0 chr11 40806841 40806910 -107976562 + AT_rich Low_complexity Low_complexity 1 69 0 1868 198 75 39 chr11 40807535 40808029 -107975443 + MER67D LTR ERV1 3 514 0 258 232 152 0 chr11 40808357 40808469 -107975003 + MER103 DNA DNA 26 154 -12 205 109 83 13 chr11 40809285 40809450 -107974022 + (TA)n Simple_repeat Simple_repeat 1 176 0 281 100 20 50 chr11 40809450 40809550 -107973922 + (TTATA)n Simple_repeat Simple_repeat 5 101 0 397 159 0 69 chr11 40809552 40809741 -107973731 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 304 142 65 7 chr11 40809752 40809907 -107973565 + (TA)n Simple_repeat Simple_repeat 1 164 0 22 70 0 0 chr11 40809907 40809950 -107973522 + AT_rich Low_complexity Low_complexity 1 43 0 313 175 48 0 chr11 40809963 40810129 -107973343 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 0 0 0 chr11 40810145 40810170 -107973302 + AT_rich Low_complexity Low_complexity 1 25 0 7332 95 32 3 chr11 40910170 40911318 -107872154 - L1P LINE L1 -1531 4615 3435 21 36 0 0 chr11 40911436 40911464 -107872008 + AT_rich Low_complexity Low_complexity 1 28 0 309 250 9 19 chr11 40911537 40911645 -107871827 + (TA)n Simple_repeat Simple_repeat 2 108 0 212 247 24 35 chr11 40911838 40911923 -107871549 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 371 184 40 17 chr11 40911924 40912098 -107871374 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 71 0 0 chr11 40912145 40912187 -107871285 + AT_rich Low_complexity Low_complexity 1 42 0 282 294 59 50 chr11 40913095 40913580 -107869892 - L1ME LINE L1 -635 5529 5041 276 265 20 10 chr11 40913957 40914059 -107869413 - LTR1 LTR ERV1 -1 784 682 289 293 40 0 chr11 40914243 40914342 -107869130 + MER115 DNA AcHobo 590 692 -1 243 341 15 7 chr11 40915541 40915676 -107867796 - L1ME LINE L1 -1959 4187 4052 3156 175 100 16 chr11 40916014 40916721 -107866751 - LTR1B LTR ERV1 -3 782 1 1435 84 0 0 chr11 40916809 40917000 -107866472 + LTR17 LTR ERV1 1 191 -589 230 20 41 41 chr11 40918123 40918172 -107865300 + (TTA)n Simple_repeat Simple_repeat 3 51 0 3029 74 2 5 chr11 40919426 40919829 -107863643 + L1PA8 LINE L1 5763 6164 -8 239 297 76 0 chr11 40920054 40920172 -107863300 + L1M4 LINE L1 3317 3443 -2703 323 301 79 64 chr11 40921110 40921515 -107861957 + L1ME LINE L1 541 951 -5119 1855 87 0 43 chr11 40922480 40922756 -107860716 - AluY SINE Alu -3 308 45 1994 204 34 9 chr11 40922983 40923424 -107860048 - LTR47A LTR ERVL 0 452 1 469 263 35 91 chr11 40924073 40924305 -107859167 + MIR SINE MIR 44 262 0 220 307 89 10 chr11 41024769 41024870 -107758602 - L2 LINE L2 -1279 2035 1927 351 330 80 24 chr11 41025139 41025427 -107758045 + L1M4 LINE L1 4488 4791 -1355 24 67 0 0 chr11 41025733 41025778 -107757694 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr11 41025949 41025991 -107757481 + AT_rich Low_complexity Low_complexity 1 42 0 977 170 25 0 chr11 41026371 41026571 -107756901 - L1MA4 LINE L1 -9 6291 6087 38 22 0 0 chr11 41026701 41026746 -107756726 + AT_rich Low_complexity Low_complexity 1 45 0 235 167 19 0 chr11 41026792 41026846 -107756626 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 * 444 144 50 56 chr11 41026819 41026999 -107756473 + (TA)n Simple_repeat Simple_repeat 1 179 0 483 270 29 59 chr11 41027013 41027217 -107756255 + LTR16A LTR ERVL 161 358 -92 345 24 0 0 chr11 41027351 41027393 -107756079 + (TG)n Simple_repeat Simple_repeat 2 43 0 2173 203 20 99 chr11 41027946 41028636 -107754836 + L1MC2 LINE L1 5544 6179 -165 283 202 24 0 chr11 41029022 41029106 -107754366 + (TA)n Simple_repeat Simple_repeat 2 87 0 251 330 0 18 chr11 41029309 41029421 -107754051 + HAL1b LINE L1 380 489 -859 4300 181 27 11 chr11 41029548 41030897 -107752575 + L1P4 LINE L1 4402 5775 -391 2636 89 96 5 chr11 41031402 41031807 -107751665 - LTR7 LTR ERV1 -8 442 1 595 242 0 23 chr11 41031968 41032096 -107751376 - FLAM_A SINE Alu -8 125 1 1932 134 29 13 chr11 41032979 41033285 -107750187 + AluSx SINE Alu 1 311 -1 185 62 0 31 chr11 41035246 41035278 -107748194 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 34 42 0 0 chr11 41035795 41035843 -107747629 + AT_rich Low_complexity Low_complexity 1 48 0 315 0 0 0 chr11 41036016 41036051 -107747421 + (TG)n Simple_repeat Simple_repeat 2 36 0 1172 253 108 50 chr11 41036090 41036652 -107746820 - MLT1G1 LTR MaLR 0 595 1 26 30 0 0 chr11 41036959 41036992 -107746480 + AT_rich Low_complexity Low_complexity 1 33 0 1154 86 0 0 chr11 41037360 41037511 -107745961 + AluSg/x SINE Alu 157 307 -5 517 347 31 5 chr11 41037542 41037735 -107745737 + MIR SINE MIR 51 248 -14 797 226 30 103 chr11 41038039 41038081 -107745391 - MLT2C1 LTR ERVL -20 377 333 378 0 0 0 chr11 41038081 41038123 -107745349 + (CA)n Simple_repeat Simple_repeat 2 43 0 797 226 30 103 chr11 41038123 41038487 -107744985 - MLT2C1 LTR ERVL -64 333 1 269 333 11 0 chr11 41038501 41038594 -107744878 + L2 LINE L2 3219 3312 -1 285 256 16 70 chr11 41039821 41039950 -107743522 + MER103 DNA DNA 12 133 -33 191 102 34 34 chr11 41040294 41040353 -107743119 + (TA)n Simple_repeat Simple_repeat 1 59 0 420 171 24 29 chr11 41040368 41040538 -107742934 + (TA)n Simple_repeat Simple_repeat 1 169 0 473 295 97 87 chr11 41041450 41041983 -107741489 + HAL1 LINE L1 843 1386 -1121 207 88 0 0 chr11 41041983 41042017 -107741455 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 473 295 97 87 chr11 41042017 41042206 -107741266 + HAL1 LINE L1 1386 1572 -935 270 357 24 8 chr11 41043701 41043827 -107739645 - L2 LINE L2 0 3313 3186 3298 134 7 31 chr11 41043980 41044519 -107738953 + MER1A DNA MER1_type 1 526 -1 321 89 0 0 chr11 41044659 41044704 -107738768 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 349 0 12 chr11 41044793 41044876 -107738596 + MIR SINE MIR 75 156 -106 568 318 51 0 chr11 41045252 41045466 -107738006 + MLT1J2 LTR MaLR 22 246 -204 189 154 0 0 chr11 41045690 41045729 -107737743 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 697 77 0 94 chr11 41045967 41046084 -107737388 - AluSc SINE Alu -131 178 73 977 65 0 0 chr11 41046084 41046208 -107737264 + AluY SINE Alu 181 304 -7 6469 162 46 35 chr11 41046303 41046531 -107736941 - HSMAR2 DNA Mariner -4 1298 1074 1471 106 53 46 chr11 41046531 41046814 -107736658 - L1MA2 LINE L1 0 6304 6020 6469 162 46 35 chr11 41046814 41047868 -107735604 - HSMAR2 DNA Mariner -228 1074 2 29 28 0 0 chr11 41048508 41048544 -107734928 + AT_rich Low_complexity Low_complexity 1 36 0 993 74 0 0 chr11 41048929 41049064 -107734408 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 208 333 0 73 chr11 41049453 41049576 -107733896 + L2 LINE L2 2898 3011 -261 465 353 40 0 chr11 41049735 41049908 -107733564 - MIR SINE MIR -14 248 69 182 423 72 0 chr11 41049970 41050081 -107733391 + L2 LINE L2 3154 3272 0 1227 175 66 83 chr11 41050204 41050552 -107732920 + MSTB1 LTR MaLR 83 424 -8 735 271 28 40 chr11 41050556 41050803 -107732669 - MER110 LTR ERV1 -189 302 59 388 264 74 25 chr11 41052778 41052939 -107730533 + MIR SINE MIR 3 176 -65 524 333 38 5 chr11 41053658 41053868 -107729604 - MIR SINE MIR -12 250 34 498 279 32 64 chr11 41053874 41054154 -107729318 - LTR37B LTR ERV1 0 468 198 24 0 0 0 chr11 41054201 41054225 -107729247 + AT_rich Low_complexity Low_complexity 1 24 0 568 234 198 25 chr11 41054410 41054679 -107728793 - MER52A LTR ERV1 -137 894 283 738 244 12 6 chr11 41054721 41054885 -107728587 - LTR28 LTR ERV1 -855 165 1 203 273 0 0 chr11 41054960 41055015 -107728457 - MIR SINE MIR -111 151 97 235 203 20 61 chr11 41055127 41055275 -107728197 + (TTATA)n Simple_repeat Simple_repeat 4 145 0 229 363 62 26 chr11 41055430 41055543 -107727929 - L2 LINE L2 -8 3264 3148 569 335 36 22 chr11 41056081 41056356 -107727116 + LTR16B LTR ERVL 134 412 -52 1377 124 9 0 chr11 41058298 41058516 -107724956 - L1PA13 LINE L1 -6 6157 5938 366 292 62 23 chr11 41058659 41058916 -107724556 - L1MC4a LINE L1 -1862 5946 5680 1362 202 31 87 chr11 41059859 41061212 -107722260 + L1MD3 LINE L1 5385 5651 -533 2455 147 28 14 chr11 41060365 41060787 -107722685 - MSTA LTR MaLR 0 428 1 1007 184 34 59 chr11 41060787 41060853 -107722619 + L1MB7 LINE L1 5827 5850 -334 2135 135 0 0 chr11 41060853 41061165 -107722307 + AluSx SINE Alu 1 312 0 1007 184 34 59 chr11 41061165 41061249 -107722223 + L1MB7 LINE L1 5850 5935 -249 451 148 12 0 chr11 41061267 41061348 -107722124 + L1MB7 LINE L1 6084 6165 -19 285 258 0 62 chr11 41061368 41061465 -107722007 - L2 LINE L2 -957 2357 2267 314 315 91 14 chr11 41061673 41061816 -107721656 - MIR SINE MIR -42 220 67 416 290 97 14 chr11 41061874 41062019 -107721453 + MER5B DNA MER1_type 1 157 -21 367 320 160 13 chr11 41063243 41063399 -107720073 + MER5A DNA MER1_type 10 188 -1 189 355 136 7 chr11 41064015 41064170 -107719302 + MIR3 SINE MIR 30 204 -4 218 222 0 56 chr11 41065453 41065507 -107717965 - MIR SINE MIR -89 173 123 27 0 0 0 chr11 41065928 41065955 -107717517 + AT_rich Low_complexity Low_complexity 1 27 0 322 247 68 49 chr11 41066259 41066541 -107716931 - L1MC5 LINE L1 -188 7854 7455 2581 63 209 165 chr11 41066543 41067142 -107716330 + LTR12 LTR ERV1 90 714 0 1016 47 0 0 chr11 41067245 41067372 -107716100 - L1PA5 LINE L1 -174 5980 5854 1213 48 0 42 chr11 41067372 41067536 -107715936 + L1PA5 LINE L1 5989 6146 -8 647 261 55 68 chr11 41068103 41068651 -107714821 - L1MC4 LINE L1 -394 7442 6962 199 373 46 7 chr11 41068707 41068827 -107714645 + MIR SINE MIR 16 137 -71 483 287 135 22 chr11 41070136 41070366 -107713106 + MIR SINE MIR 3 258 -4 207 0 0 0 chr11 41071441 41071464 -107712008 + (CA)n Simple_repeat Simple_repeat 2 24 0 217 313 0 15 chr11 41072636 41072703 -107710769 - L2 LINE L2 -193 3079 3014 1828 240 113 15 chr11 41074323 41075436 -107708036 - L1MCa LINE L1 -3317 3109 1756 1522 137 0 65 chr11 41075436 41075739 -107707733 - AluSx SINE Alu 0 312 36 1828 240 113 15 chr11 41075739 41075939 -107707533 - L1MCa LINE L1 -4670 1756 1577 898 164 52 19 chr11 41076304 41076517 -107706955 + L1MA7 LINE L1 6072 6291 0 23 78 0 0 chr11 41076517 41076568 -107706904 + AT_rich Low_complexity Low_complexity 1 51 0 4254 33 0 0 chr11 41076828 41077349 -107706123 + L1P LINE L1 4780 5300 -846 546 342 43 18 chr11 41077491 41077766 -107705706 - HERV16 LTR ERVL -2083 2913 2658 952 311 62 42 chr11 41077979 41078499 -107704973 - HERV16 LTR ERVL -2623 2373 1844 1100 135 39 22 chr11 41078603 41078832 -107704640 + L1M4c LINE L1 2101 2333 -4051 480 220 9 0 chr11 41078834 41078943 -107704529 + L1M4c LINE L1 3783 3892 -2490 1434 189 49 40 chr11 41078944 41079314 -107704158 - THE1C LTR MaLR 0 375 3 1926 153 3 6 chr11 41079316 41079636 -107703836 - THE1C-int LTR MaLR 0 1651 1333 29 0 0 0 chr11 41080322 41080351 -107703121 + AT_rich Low_complexity Low_complexity 1 29 0 228 100 0 0 chr11 41081019 41081049 -107702423 + MLT2B2 LTR ERVL 486 515 0 1787 171 0 23 chr11 41081103 41081407 -107702065 + AluJb SINE Alu 1 297 -15 212 281 0 0 chr11 41081420 41081477 -107701995 + (TA)n Simple_repeat Simple_repeat 2 58 0 1751 166 27 14 chr11 41081562 41081858 -107701614 - AluSx SINE Alu -12 300 1 347 119 102 0 chr11 41082250 41082309 -107701163 - THE1C LTR MaLR -310 65 1 1804 109 15 0 chr11 41082309 41082576 -107700896 - THE1C-int LTR MaLR 0 1580 1310 8397 103 17 4 chr11 41082581 41083753 -107699719 - HERVL LTR ERVL -2000 3654 2468 278 288 198 12 chr11 41083853 41084149 -107699323 - L1ME LINE L1 -545 5559 5208 238 253 0 38 chr11 41084269 41084348 -107699124 - L1ME LINE L1 -5953 117 42 11809 102 17 6 chr11 41085207 41086946 -107696526 - HERV9 LTR ERV1 -6082 2317 559 2360 268 73 17 chr11 41087144 41088260 -107695212 - L1M4 LINE L1 -1062 5084 3906 4286 156 52 67 chr11 41088394 41088618 -107694854 - Tigger2 DNA MER2_type -6 2712 2486 1846 157 3 3 chr11 41088618 41088905 -107694567 - AluSx SINE Alu -25 287 1 4286 156 52 67 chr11 41088905 41089579 -107693893 - Tigger2 DNA MER2_type -232 2486 1827 398 191 36 73 chr11 41089684 41089794 -107693678 + LTR38B LTR ERV1 8 113 -497 1142 232 14 7 chr11 41089817 41090101 -107693371 + L1M4c LINE L1 4390 4675 -1707 247 324 198 28 chr11 41091392 41091574 -107691898 - L3 LINE CR1 -71 1506 1294 718 143 14 43 chr11 41091620 41091760 -107691712 - THE1C LTR MaLR 0 375 240 6847 124 6 4 chr11 41091872 41092879 -107690593 + THE1C-int LTR MaLR 572 1580 0 2088 149 16 19 chr11 41092879 41093255 -107690217 + THE1C LTR MaLR 1 375 0 1209 196 26 22 chr11 41093257 41093527 -107689945 + AluJo SINE Alu 22 292 -20 1468 197 7 0 chr11 41093527 41093816 -107689656 - L1PA15-16 LINE L1 -4309 2540 2250 3464 174 29 18 chr11 41093919 41095126 -107688346 + L1P5 LINE L1 4787 6005 -382 339 269 34 50 chr11 41095297 41095416 -107688056 - LTR16A LTR ERVL -277 173 57 5218 161 25 38 chr11 41096559 41097531 -107685941 + L1PA15-16 LINE L1 979 1937 -4912 1472 165 11 4 chr11 41097531 41097798 -107685674 - AluSp SINE Alu -16 297 29 280 283 106 9 chr11 41098041 41098154 -107685318 + MIR SINE MIR 129 252 -10 252 59 0 0 chr11 41098770 41098804 -107684668 + (CA)n Simple_repeat Simple_repeat 2 35 0 208 169 68 51 chr11 41099297 41099356 -107684116 - L2 LINE L2 -815 2499 2440 460 159 0 0 chr11 41099639 41099708 -107683764 + Tigger2 DNA MER2_type 1 69 -2649 * 2180 201 20 11 chr11 41099692 41100140 -107683332 + Tigger2 DNA MER2_type 2267 2718 0 5597 221 25 28 chr11 41100989 41102457 -107681015 - L1 LINE L1 -1173 4973 3510 1219 237 131 73 chr11 41102589 41103424 -107680048 + L1ME2 LINE L1 5264 6152 -12 432 252 19 0 chr11 41103637 41103740 -107679732 + L1MD2 LINE L1 6028 6132 -227 2768 124 68 177 chr11 41103843 41104286 -107679186 + LTR12 LTR ERV1 37 107 -607 2541 51 0 3 chr11 41104286 41104598 -107678874 - AluY SINE Alu 0 311 1 2768 124 68 177 chr11 41104598 41105147 -107678325 + LTR12 LTR ERV1 107 714 0 688 168 20 13 chr11 41105147 41105279 -107678193 + HERV9 LTR ERV1 40 172 -8227 360 228 130 118 chr11 41105981 41106123 -107677349 + LTR16A1 LTR ERVL 1 140 -317 869 148 26 26 chr11 41106123 41106312 -107677160 + MER53 DNA DNA 1 189 0 360 228 130 118 chr11 41106312 41106507 -107676965 + LTR16A1 LTR ERVL 140 342 -115 797 132 0 0 chr11 41106507 41106628 -107676844 - MLT2B1 LTR ERVL 0 520 400 417 200 70 43 chr11 41106615 41106730 -107676742 + LTR16A1 LTR ERVL 340 457 0 * 327 288 52 44 chr11 41106730 41106959 -107676513 + HERV16 LTR ERVL 1 231 -4765 24 0 0 0 chr11 41108021 41108045 -107675427 + AT_rich Low_complexity Low_complexity 1 24 0 660 333 122 23 chr11 41108567 41108912 -107674560 - L3 LINE CR1 -12 1565 1187 720 223 59 9 chr11 41109125 41109345 -107674127 - L1M4 LINE L1 -2263 3883 3653 1748 169 52 27 chr11 41109345 41109711 -107673761 + THE1C LTR MaLR 1 375 0 4449 206 35 4 chr11 41109713 41110746 -107672726 + THE1C-int LTR MaLR 4 1071 -580 358 95 0 12 chr11 41110917 41110978 -107672494 + MLT2A2 LTR ERVL 404 453 0 3851 112 50 10 chr11 41111523 41112142 -107671330 + LTR9B LTR ERV1 1 644 0 22 56 0 0 chr11 41112407 41112443 -107671029 + AT_rich Low_complexity Low_complexity 1 36 0 381 154 88 13 chr11 41112803 41112929 -107670543 + L1MD3 LINE L1 6915 7099 -705 328 256 47 0 chr11 41112990 41113076 -107670396 + MLT1F1 LTR MaLR 36 125 -442 396 148 49 0 chr11 41113076 41113157 -107670315 + L1MD3 LINE L1 7404 7488 -507 214 366 73 30 chr11 41114556 41114720 -107668752 + L2 LINE L2 3009 3179 -93 511 162 18 9 chr11 41114980 41115091 -107668381 - L1PA16 LINE L1 -1 6165 6054 1203 212 172 109 chr11 41115098 41115823 -107667649 + LTR28 LTR ERV1 1 967 -53 386 256 8 40 chr11 41115863 41115988 -107667484 + LTR28 LTR ERV1 900 1020 0 1600 180 12 19 chr11 41115990 41116312 -107667160 - L1PA16 LINE L1 -110 6056 5737 800 224 55 15 chr11 41116432 41116633 -107666839 - MER49 LTR ERV1 -714 209 1 248 81 0 0 chr11 41116634 41116671 -107666801 - MER39 LTR ERV1 -292 415 379 * 346 115 213 0 chr11 41116669 41116730 -107666742 - MER39B LTR ERV1 -579 74 1 200 35 35 0 chr11 41117042 41117071 -107666401 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1737 149 14 3 chr11 41120341 41120629 -107662843 + AluSx SINE Alu 1 291 -21 28 102 0 0 chr11 41120801 41120899 -107662573 + AT_rich Low_complexity Low_complexity 1 98 0 21 36 0 0 chr11 41121036 41121064 -107662408 + AT_rich Low_complexity Low_complexity 1 28 0 312 127 0 0 chr11 41121084 41121139 -107662333 + (TA)n Simple_repeat Simple_repeat 2 56 0 1089 222 43 0 chr11 41121255 41121512 -107661960 - L1 LINE L1 -2217 3929 3662 * 5288 118 22 0 chr11 41121508 41122273 -107661199 - THE1B-int LTR MaLR -798 782 1 879 184 46 83 chr11 41122273 41122347 -107661125 - THE1B LTR MaLR 0 364 289 1818 151 0 0 chr11 41122347 41122625 -107660847 + AluSg SINE Alu 33 310 0 879 184 46 83 chr11 41122625 41122767 -107660705 - THE1B LTR MaLR -75 289 156 4324 219 11 26 chr11 41122878 41123284 -107660188 + L1M4c LINE L1 25 435 -5949 879 273 77 20 chr11 41123284 41123793 -107659679 - MER34 LTR ERV1 0 542 5 4324 219 11 26 chr11 41123793 41124362 -107659110 + L1M4c LINE L1 435 986 -5398 879 124 14 14 chr11 41124490 41124670 -107658802 + AluSg/x SINE Alu 154 312 0 705 162 14 28 chr11 41124677 41124819 -107658653 + FLAM_C SINE Alu 1 140 -3 399 254 99 16 chr11 41124820 41125031 -107658441 + L1ME2 LINE L1 5203 5429 -743 2873 130 60 0 chr11 41125067 41125537 -107657935 - MER75 DNA T2_type -16 498 1 1934 228 80 49 chr11 41125544 41126223 -107657249 + L1ME2 LINE L1 5443 6142 -22 1812 168 48 20 chr11 41126613 41126803 -107656669 - THE1B LTR MaLR 0 364 158 3033 50 0 0 chr11 41126803 41127181 -107656291 + L1PA5 LINE L1 5773 6150 -4 1812 168 48 20 chr11 41127181 41127342 -107656130 - THE1B LTR MaLR -206 158 3 773 228 0 0 chr11 41127567 41127725 -107655747 - AluJo SINE Alu -4 298 141 533 213 44 44 chr11 41127736 41127759 -107655713 - AluJo SINE Alu -176 136 114 2134 123 118 18 chr11 41127759 41127782 -107655690 - MSTA LTR MaLR 0 428 409 3280 200 19 77 chr11 41127782 41128811 -107654661 + LTR5 LTR ERVK 1 969 0 2134 123 118 18 chr11 41128811 41129176 -107654296 - MSTA LTR MaLR -19 409 1 533 213 44 44 chr11 41129176 41129288 -107654184 - AluJo SINE Alu -197 115 1 662 133 49 28 chr11 41129633 41129776 -107653696 - MLT1B LTR MaLR -191 199 54 3019 230 37 32 chr11 41129804 41131255 -107652217 + L1MC1 LINE L1 4346 5812 -521 1677 163 9 16 chr11 41131255 41131575 -107651897 - MER31A LTR ERV1 0 485 168 1592 186 30 0 chr11 41131675 41131971 -107651501 + L1MC1 LINE L1 6001 6305 -28 22 56 0 0 chr11 41132281 41132317 -107651155 + AT_rich Low_complexity Low_complexity 1 36 0 323 321 97 26 chr11 41132472 41133018 -107650454 + L1M4 LINE L1 3072 3673 -2473 1696 174 8 110 chr11 41133027 41133401 -107650071 + Tigger3(Golem) DNA MER2_type 9 3024 -5 391 274 18 6 chr11 41133401 41133565 -107649907 + (TA)n Simple_repeat Simple_repeat 1 166 0 324 314 6 30 chr11 41133709 41133878 -107649594 + L1M4 LINE L1 4531 4695 -1451 457 295 69 20 chr11 41135705 41136095 -107647377 - L1M4 LINE L1 -2827 3319 2911 23 0 0 0 chr11 41137707 41137730 -107645742 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr11 41137997 41138043 -107645429 + AT_rich Low_complexity Low_complexity 1 46 0 223 337 51 10 chr11 41138149 41138247 -107645225 + MIR SINE MIR 31 132 -130 23 33 0 0 chr11 41139019 41139049 -107644423 + AT_rich Low_complexity Low_complexity 1 30 0 298 302 47 47 chr11 41140285 41140477 -107642995 - MIR SINE MIR -2 260 69 27 73 0 0 chr11 41140513 41140568 -107642904 + AT_rich Low_complexity Low_complexity 1 55 0 198 0 0 0 chr11 41140717 41140739 -107642733 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 453 294 27 10 chr11 41141716 41142006 -107641466 + L1M4b LINE L1 1331 1757 -5190 858 249 67 45 chr11 41142025 41142199 -107641273 - L1M4 LINE L1 -2828 3318 3149 1849 188 81 2 chr11 41142199 41142592 -107640880 + MSTA LTR MaLR 1 424 -4 858 249 67 45 chr11 41142592 41143081 -107640391 - L1M4 LINE L1 -2997 3149 2584 21 0 0 0 chr11 41143128 41143149 -107640323 + AT_rich Low_complexity Low_complexity 1 21 0 434 295 72 34 chr11 41143244 41143630 -107639842 + L1M4b LINE L1 1988 2388 -4750 561 202 0 9 chr11 41143646 41143755 -107639717 - FRAM SINE Alu -25 151 44 223 186 39 49 chr11 41145728 41145830 -107637642 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 691 160 7 62 chr11 41145844 41145988 -107637484 - AluJo SINE Alu -176 136 1 365 36 0 55 chr11 41146104 41146159 -107637313 - LTR14A LTR ERVK -292 52 1 1572 251 106 22 chr11 41147220 41147671 -107635801 + MLT1F1 LTR MaLR 1 489 -78 329 93 19 0 chr11 41147902 41147956 -107635516 + (CA)n Simple_repeat Simple_repeat 2 56 0 5869 98 25 8 chr11 41148277 41149275 -107634197 - L1PA11 LINE L1 -1 6173 5156 32 0 0 0 chr11 41149405 41149437 -107634035 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr11 41150514 41150543 -107632929 + AT_rich Low_complexity Low_complexity 1 29 0 1907 214 30 14 chr11 41151006 41151444 -107632028 - MLT-int LTR MaLR -39 1696 900 2081 138 51 28 chr11 41151951 41152307 -107631165 - THE1B LTR MaLR 0 364 1 547 85 0 0 chr11 41152307 41152389 -107631083 - THE1B-int LTR MaLR 0 1580 1499 839 201 24 6 chr11 41152772 41152941 -107630531 - MER5B DNA MER1_type -1 177 6 1226 273 25 66 chr11 41153035 41153477 -107629995 - MLT1D LTR MaLR -9 496 76 2055 147 0 6 chr11 41153477 41153791 -107629681 + AluSx SINE Alu 1 312 0 1226 273 25 66 chr11 41153791 41153865 -107629607 - MLT1D LTR MaLR -429 76 1 2530 57 0 16 chr11 41154386 41154702 -107628770 + AluY SINE Alu 1 311 0 22 56 0 0 chr11 41155020 41155056 -107628416 + AT_rich Low_complexity Low_complexity 1 36 0 331 296 23 15 chr11 41156099 41156231 -107627241 + MER94 DNA DNA 2 134 0 271 204 17 0 chr11 41156819 41156885 -107626587 + L1MB3 LINE L1 5716 5779 -387 11838 196 31 16 chr11 41156894 41162626 -107620846 + L1PA13 LINE L1 1 5981 -833 2812 7 0 0 chr11 41162626 41162935 -107620537 + AluYa5 SINE Alu 1 309 -2 11838 196 31 16 chr11 41162935 41163782 -107619690 + L1PA13 LINE L1 5981 6814 0 891 126 13 0 chr11 41163775 41163926 -107619546 + L1MB3 LINE L1 5769 5921 -262 * 213 313 36 68 chr11 41164379 41164571 -107618901 - L2 LINE L2 -33 3280 3095 188 299 21 31 chr11 41164951 41165048 -107618424 - MIR3 SINE MIR -3 205 110 291 316 177 6 chr11 41166717 41166875 -107616597 + L3 LINE CR1 1308 1492 -85 439 288 36 45 chr11 41167284 41167506 -107615966 + MIR SINE MIR 43 262 0 25 31 0 0 chr11 41168263 41168295 -107615177 + AT_rich Low_complexity Low_complexity 1 32 0 1934 128 3 3 chr11 41168904 41169219 -107614253 - AluSx SINE Alu 0 315 1 201 74 0 0 chr11 41169400 41169427 -107614045 + (TATG)n Simple_repeat Simple_repeat 4 30 0 22 0 0 0 chr11 41170059 41170081 -107613391 + AT_rich Low_complexity Low_complexity 1 22 0 246 323 182 27 chr11 41170236 41170456 -107613016 - L2 LINE L2 0 3272 3019 1406 218 3 7 chr11 41170490 41170774 -107612698 + AluJb SINE Alu 1 283 -29 216 97 0 0 chr11 41170790 41170821 -107612651 + (TA)n Simple_repeat Simple_repeat 1 31 0 232 312 37 28 chr11 41170925 41171034 -107612438 - L2 LINE L2 -90 3223 3114 1286 116 0 32 chr11 41171099 41171289 -107612183 + AluSx SINE Alu 1 184 -128 232 264 81 0 chr11 41171350 41171437 -107612035 + LTR37A LTR ERV1 51 144 -282 2469 223 31 50 chr11 41171451 41172295 -107611177 + L1 LINE L1 2621 3448 -2698 1504 115 0 5 chr11 41172300 41172509 -107610963 + AluSx SINE Alu 23 230 -82 1269 326 110 36 chr11 41172510 41173372 -107610100 - L2 LINE L2 -534 2780 1810 2396 87 0 0 chr11 41173372 41173683 -107609789 + AluY SINE Alu 1 311 0 1269 326 110 36 chr11 41173683 41173970 -107609502 - L2 LINE L2 -1504 1810 1546 642 327 140 24 chr11 41173995 41174451 -107609021 - L2 LINE L2 -2576 738 230 984 170 53 11 chr11 41174601 41174789 -107608683 - L1PB4 LINE L1 0 6156 5961 3676 61 20 57 chr11 41174837 41175224 -107608248 - L1PA7 LINE L1 0 6154 5791 2385 97 0 0 chr11 41175224 41175535 -107607937 - AluY SINE Alu 0 311 1 3676 61 20 57 chr11 41175535 41175691 -107607781 - L1PA7 LINE L1 -363 5791 5631 1315 243 91 19 chr11 41176071 41176499 -107606973 + MLT1C LTR MaLR 9 467 0 22 56 0 19 chr11 41178073 41178115 -107605357 + AT_rich Low_complexity Low_complexity 1 43 -10 932 168 0 29 chr11 41178115 41178285 -107605187 - L1MA3 LINE L1 -1 6304 6140 1505 190 32 32 chr11 41178285 41178595 -107604877 - AluJb SINE Alu -2 310 1 932 168 0 29 chr11 41178595 41178632 -107604840 - L1MA3 LINE L1 -165 6140 6103 22 56 0 19 chr11 41178632 41178643 -107604829 + AT_rich Low_complexity Low_complexity 43 53 0 189 368 61 0 chr11 41178649 41178763 -107604709 - L2 LINE L2 -1 3312 3192 557 66 0 0 chr11 41179069 41179145 -107604327 + AluSc SINE Alu 218 293 -16 1672 188 3 14 chr11 41179413 41179705 -107603767 + AluJb SINE Alu 1 289 -23 312 305 61 70 chr11 41179982 41180326 -107603146 + L1M4 LINE L1 2280 2620 -3526 1232 234 66 46 chr11 41180374 41180921 -107602551 - L1MEc LINE L1 -5324 1072 515 240 250 92 0 chr11 41180925 41181001 -107602471 - L1MEc LINE L1 -5855 541 459 605 313 4 30 chr11 41181029 41181262 -107602210 - L1MEc LINE L1 -6127 269 43 3029 274 123 8 chr11 41181406 41182637 -107600835 - L1MC4 LINE L1 -174 7868 6496 408 182 0 25 chr11 41182652 41182773 -107600699 + (TA)n Simple_repeat Simple_repeat 2 119 0 236 246 0 16 chr11 41183229 41183290 -107600182 + GA-rich Low_complexity Low_complexity 4 63 0 2929 164 33 74 chr11 41184769 41185488 -107597984 - LTR8 LTR ERV1 -1 690 1 803 223 47 56 chr11 41186971 41187186 -107596286 + MER58A DNA MER1_type 6 218 -6 224 227 50 17 chr11 41188260 41188379 -107595093 + (TA)n Simple_repeat Simple_repeat 1 123 0 634 182 9 0 chr11 41188384 41188494 -107594978 + AluJo SINE Alu 124 234 -78 460 343 15 15 chr11 41189050 41189254 -107594218 - MIR SINE MIR 0 262 59 22 0 0 0 chr11 41189382 41189404 -107594068 + AT_rich Low_complexity Low_complexity 1 22 0 1997 143 32 19 chr11 41189664 41190034 -107593438 - THE1C LTR MaLR 0 375 1 1364 249 100 36 chr11 41191148 41191617 -107591855 + LTR40a LTR ERVL 1 499 -20 25 0 0 0 chr11 41191619 41191644 -107591828 + AT_rich Low_complexity Low_complexity 1 25 0 457 232 81 20 chr11 41191827 41192025 -107591447 - L1ME4a LINE L1 -224 5897 5688 1003 96 32 6 chr11 41193477 41193633 -107589839 - L1PA13 LINE L1 0 6163 6004 4075 140 19 7 chr11 41193633 41194306 -107589166 + MER50 LTR ERV1 3 683 -51 4275 152 10 48 chr11 41194314 41195014 -107588458 - L1PA12 LINE L1 -156 6009 5325 276 70 0 0 chr11 41195014 41195057 -107588415 - AluSp/q SINE Alu -4 299 257 4275 152 10 48 chr11 41195057 41195450 -107588022 - L1PA12 LINE L1 -840 5325 4918 228 229 209 38 chr11 41195450 41195555 -107587917 - MER67D LTR ERV1 -15 499 377 194 125 0 25 chr11 41195557 41195597 -107587875 + (TTTCC)n Simple_repeat Simple_repeat 2 40 0 1194 216 24 76 chr11 41195706 41196034 -107587438 - MER67D LTR ERV1 -203 311 1 2318 50 0 7 chr11 41196844 41197123 -107586349 - AluY SINE Alu -22 289 13 24 67 0 0 chr11 41197310 41197355 -107586117 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr11 41197365 41197405 -107586067 + AT_rich Low_complexity Low_complexity 1 40 0 234 289 0 26 chr11 41198897 41198973 -107584499 + (TATG)n Simple_repeat Simple_repeat 3 76 0 239 186 0 0 chr11 41199219 41199262 -107584210 - MER67C LTR ERV1 -435 275 233 24 0 0 0 chr11 41200931 41200955 -107582517 + AT_rich Low_complexity Low_complexity 1 24 0 5963 36 1 1 chr11 41201356 41202077 -107581395 - L1PA4 LINE L1 -6 6149 5429 25 0 0 0 chr11 41202458 41202483 -107580989 + AT_rich Low_complexity Low_complexity 1 25 0 964 348 112 16 chr11 41202611 41203449 -107580023 + L2 LINE L2 416 1334 -1980 311 276 32 32 chr11 41203571 41203694 -107579778 - L1M4 LINE L1 -1962 4184 4062 312 316 12 42 chr11 41204209 41204377 -107579095 - MLT2E LTR ERVL -419 209 47 487 332 38 21 chr11 41204871 41205109 -107578363 - ERVL LTR ERVL -515 5249 5008 2185 305 102 24 chr11 41205165 41205798 -107577674 - ERVL LTR ERVL -923 4841 4096 2061 128 3 3 chr11 41205798 41206104 -107577368 + AluSc SINE Alu 1 306 -3 2185 305 102 24 chr11 41206104 41206504 -107576968 - ERVL LTR ERVL -1668 4096 3728 4146 174 52 38 chr11 41206552 41207454 -107576018 - L1MA7 LINE L1 -2 6289 5375 5468 251 35 59 chr11 41207458 41209294 -107574178 - L1M4 LINE L1 -1924 5641 3763 1552 111 4 4 chr11 41209294 41209520 -107573952 - AluSg/x SINE Alu -7 305 80 5468 251 35 59 chr11 41209520 41209959 -107573513 - L1M4 LINE L1 -3802 3763 3441 2436 75 3 0 chr11 41209959 41210266 -107573206 - AluY SINE Alu -2 309 2 5468 251 35 59 chr11 41210266 41210612 -107572860 - L1M4 LINE L1 -4124 3441 3088 1319 318 103 56 chr11 41210661 41211708 -107571764 - ERVL LTR ERVL -2293 3192 2097 858 314 57 63 chr11 41211711 41212360 -107571112 - ERVL LTR ERVL -3891 1873 1229 23 0 0 0 chr11 41212602 41212625 -107570847 + AT_rich Low_complexity Low_complexity 1 23 0 258 347 17 23 chr11 41213285 41213461 -107570011 - L1MC/D LINE L1 -2260 5548 5374 195 69 0 0 chr11 41213482 41213511 -107569961 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2515 133 16 23 chr11 41215045 41215482 -107567990 - L1M2 LINE L1 -481 5819 5386 1955 179 21 23 chr11 41215484 41215921 -107567551 + L1MA8 LINE L1 5853 6288 -3 2749 10 0 3 chr11 41216199 41216511 -107566961 + AluYa5 SINE Alu 1 311 0 309 244 25 17 chr11 41216752 41216871 -107566601 + CT-rich Low_complexity Low_complexity 1 120 0 288 190 6 34 chr11 41216994 41217351 -107566121 + (TA)n Simple_repeat Simple_repeat 1 346 0 405 201 40 23 chr11 41217365 41217539 -107565933 + (TA)n Simple_repeat Simple_repeat 2 178 0 225 0 0 0 chr11 41217542 41217567 -107565905 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr11 41218618 41218647 -107564825 + AT_rich Low_complexity Low_complexity 1 29 0 551 352 90 39 chr11 41218783 41219387 -107564085 + L2 LINE L2 2679 3312 -1 404 382 145 27 chr11 41220324 41221329 -107562143 + L2 LINE L2 310 1433 -1881 22 35 0 0 chr11 41221565 41221594 -107561878 + AT_rich Low_complexity Low_complexity 1 29 0 486 274 57 28 chr11 41222514 41222726 -107560746 - MER20 DNA MER1_type 0 219 2 2143 102 10 0 chr11 41223021 41223325 -107560147 - AluSp SINE Alu -2 311 5 23 0 0 0 chr11 41223601 41223624 -107559848 + AT_rich Low_complexity Low_complexity 1 23 0 308 318 111 8 chr11 41224010 41224136 -107559336 - L2 LINE L2 -2 3311 3173 1392 205 3 30 chr11 41226651 41226953 -107556519 + AluJo SINE Alu 1 294 -18 996 181 0 82 chr11 41227426 41227538 -107555934 + AluJo SINE Alu 75 195 -136 4086 161 70 58 chr11 41227538 41228597 -107554875 + MER11C LTR ERVK 1 1071 0 996 181 0 82 chr11 41228597 41228760 -107554712 + AluJo SINE Alu 195 331 0 1863 154 0 3 chr11 41229000 41229286 -107554186 - AluSx SINE Alu -27 285 1 21 0 0 0 chr11 41229481 41229502 -107553970 + AT_rich Low_complexity Low_complexity 1 21 0 180 377 48 54 chr11 41229954 41230121 -107553351 + MIR SINE MIR 19 184 -78 25 51 0 0 chr11 41230191 41230230 -107553242 + AT_rich Low_complexity Low_complexity 1 39 0 33 100 0 0 chr11 41230367 41230477 -107552995 + AT_rich Low_complexity Low_complexity 1 110 0 555 164 12 6 chr11 41230484 41230734 -107552738 + AluJ SINE Alu 1 312 0 22 70 0 0 chr11 41230737 41230780 -107552692 + AT_rich Low_complexity Low_complexity 1 43 0 323 318 71 35 chr11 41231014 41231212 -107552260 - L1ME LINE L1 -409 5712 5508 333 353 97 35 chr11 41231460 41231718 -107551754 + HAL1 LINE L1 450 723 -1784 487 291 204 18 chr11 41231914 41232302 -107551170 - LTR50 LTR ERVL -106 689 230 307 314 53 35 chr11 41232433 41232602 -107550870 + HAL1 LINE L1 872 1043 -1464 911 87 0 0 chr11 41232606 41232733 -107550739 + AluY SINE Alu 184 310 -1 323 353 50 7 chr11 41233351 41233490 -107549982 + MIR3 SINE MIR 48 192 -16 203 143 0 24 chr11 41234156 41234198 -107549274 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2023 170 13 16 chr11 41235022 41235398 -107548074 - THE1C LTR MaLR 0 375 1 9059 138 47 5 chr11 41235398 41236914 -107546558 - THE1C-int LTR MaLR 0 1580 1 1292 169 93 65 chr11 41236914 41237268 -107546204 - THE1C LTR MaLR 0 364 1 1123 211 24 16 chr11 41237270 41237517 -107545955 + AluJb SINE Alu 5 253 -59 312 108 14 27 chr11 41237517 41237591 -107545881 + (TA)n Simple_repeat Simple_repeat 2 74 0 24 32 0 0 chr11 41237664 41237695 -107545777 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 41238182 41238208 -107545264 + AT_rich Low_complexity Low_complexity 1 26 0 227 298 0 0 chr11 41241564 41241649 -107541823 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 231 156 89 0 chr11 41242071 41242116 -107541356 - MIR SINE MIR -49 213 165 322 320 92 98 chr11 41242292 41242629 -107540843 - L1ME3A LINE L1 0 6588 6254 826 322 27 24 chr11 41242682 41243254 -107540218 - L1ME3A LINE L1 -464 6124 5544 253 261 61 33 chr11 41243586 41243766 -107539706 - L1ME3A LINE L1 -3528 3036 2852 329 328 0 16 chr11 41245095 41245223 -107538249 + MLT1I LTR MaLR 284 409 0 3240 255 34 43 chr11 41245475 41246647 -107536825 - L1ME3A LINE L1 -4882 1163 3 266 227 55 45 chr11 41247417 41247527 -107535945 - MER3 DNA MER1_type -5 204 94 324 83 0 0 chr11 41247691 41247739 -107535733 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 180 0 0 chr11 41247803 41247841 -107535631 - MSTB2 LTR MaLR 0 428 388 1646 160 72 39 chr11 41247841 41248204 -107535268 + THE1C LTR MaLR 1 375 0 265 180 0 0 chr11 41248204 41248215 -107535257 - MSTB2 LTR MaLR -39 389 379 5348 160 21 49 chr11 41248215 41249241 -107534231 + THE1C-int LTR MaLR 12 1009 -571 3794 69 0 243 chr11 41249244 41250153 -107533319 + LTR12 LTR ERV1 1 688 0 20094 103 22 8 chr11 41250153 41253086 -107530386 + HERV9 LTR ERV1 1 2972 -5427 1298 140 23 5 chr11 41253085 41253306 -107530166 + HERV9 LTR ERV1 4756 4980 -3419 * 2054 115 11 17 chr11 41253312 41253659 -107529813 + HERV17 LTR ERV1 703 1047 -7579 1932 103 2 16 chr11 41253648 41254073 -107529399 + HERV17 LTR ERV1 1275 1740 -5156 * 5706 92 5 0 chr11 41254070 41254841 -107528631 + HERV17 LTR ERV1 7625 8399 0 1505 59 106 94 chr11 41254841 41255097 -107528375 + LTR12 LTR ERV1 1 259 -455 342 265 8 0 chr11 41255097 41255214 -107528258 + LTR30 LTR ERV1 526 643 -79 1649 141 3 63 chr11 41255214 41255727 -107527745 + LTR12 LTR ERV1 480 714 0 3338 112 55 22 chr11 41255730 41256273 -107527199 + THE1C-int LTR MaLR 1014 1574 -6 1721 166 46 25 chr11 41256278 41256645 -107526827 + THE1C LTR MaLR 1 375 0 317 22 0 44 chr11 41256645 41256684 -107526788 - MSTB2 LTR MaLR -34 423 387 * 831 153 83 19 chr11 41256683 41256840 -107526632 - THE1C LTR MaLR -208 167 1 23 0 0 0 chr11 41257215 41257238 -107526234 + AT_rich Low_complexity Low_complexity 1 23 0 1826 174 0 0 chr11 41257312 41257599 -107525873 + AluJb SINE Alu 3 289 -23 280 292 22 0 chr11 41258630 41258719 -107524753 + GA-rich Low_complexity Low_complexity 3 93 0 264 212 12 24 chr11 41260250 41260335 -107523137 + (TA)n Simple_repeat Simple_repeat 2 85 0 310 294 24 0 chr11 41261164 41261249 -107522223 + MLT1F1 LTR MaLR 1 87 -480 981 197 26 18 chr11 41261499 41261727 -107521745 + L1MB2 LINE L1 5869 6098 -73 2004 195 114 120 chr11 41261729 41262653 -107520819 - LTR28 LTR ERV1 0 1020 1 446 133 0 0 chr11 41262659 41262734 -107520738 + L1MB2 LINE L1 6095 6169 -2 253 301 96 0 chr11 41262872 41262955 -107520517 - MIR3 SINE MIR -5 203 113 310 279 13 0 chr11 41265111 41265190 -107518282 - L2 LINE L2 0 3313 3234 314 215 81 96 chr11 41265272 41265481 -107517991 + HAL1b LINE L1 553 758 -590 314 239 44 18 chr11 41265653 41265766 -107517706 + HAL1b LINE L1 1042 1157 -191 189 74 0 0 chr11 41265814 41265841 -107517631 + (TATG)n Simple_repeat Simple_repeat 2 28 0 185 313 0 0 chr11 41265949 41265997 -107517475 - L2 LINE L2 -2063 1251 1204 1881 193 38 36 chr11 41266002 41266245 -107517227 - MSTB LTR MaLR -5 421 175 4793 9 0 0 chr11 41266245 41266787 -107516685 - L1PA2 LINE L1 0 6155 5614 1881 193 38 36 chr11 41266787 41266962 -107516510 - MSTB LTR MaLR -251 175 2 240 297 0 0 chr11 41267541 41267605 -107515867 - MIR SINE MIR -102 160 97 509 249 203 5 chr11 41268284 41268501 -107514971 - MIR SINE MIR -1 261 2 272 266 52 71 chr11 41268511 41268665 -107514807 - MIR SINE MIR -44 218 68 22 56 0 0 chr11 41269647 41269683 -107513789 + AT_rich Low_complexity Low_complexity 1 36 0 301 189 22 22 chr11 41270164 41270254 -107513218 + L1MA10 LINE L1 6244 6333 -1 1920 136 0 20 chr11 41270606 41270900 -107512572 + AluSx SINE Alu 1 288 -24 221 339 74 8 chr11 41270959 41271080 -107512392 - MIR SINE MIR -73 189 61 6835 113 8 3 chr11 41271089 41272947 -107510525 + L1PA8 LINE L1 4306 6172 0 2109 116 3 16 chr11 41273425 41273735 -107509737 + AluSq SINE Alu 1 306 -7 205 156 0 0 chr11 41273838 41273870 -107509602 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr11 41274101 41274122 -107509350 + AT_rich Low_complexity Low_complexity 1 21 0 326 189 0 0 chr11 41274420 41274473 -107508999 + MER94 DNA DNA 1 53 -81 1345 330 27 34 chr11 41274754 41275317 -107508155 + L1M3c LINE L1 230 788 -5569 814 301 45 21 chr11 41275510 41275892 -107507580 + L1M3c LINE L1 1060 1450 -4907 1051 145 30 0 chr11 41275898 41276064 -107507408 + AluSg/x SINE Alu 135 305 -7 1068 233 33 42 chr11 41276064 41276468 -107507004 + L1MA10 LINE L1 1174 1829 -4528 * 3900 203 38 77 chr11 41276455 41279372 -107504100 + L1MA10 LINE L1 3963 6611 -3 1252 271 60 53 chr11 41280498 41281687 -107501785 + L1MEc LINE L1 1414 2586 -3629 793 150 20 13 chr11 41281680 41281833 -107501639 + L1MC3 LINE L1 6539 6692 -1093 * 1294 164 29 4 chr11 41281880 41282124 -107501348 - L1PA16 LINE L1 -29 6137 5888 4153 234 33 15 chr11 41282252 41285348 -107498124 - L1PA16 LINE L1 -237 7367 3118 308 264 35 0 chr11 41285415 41285502 -107497970 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr11 41285533 41285566 -107497906 + (TG)n Simple_repeat Simple_repeat 2 34 0 2129 262 27 56 chr11 41285584 41286350 -107497122 - L1PA16 LINE L1 -4510 3071 2330 2017 116 7 14 chr11 41286350 41286643 -107496829 - AluSq SINE Alu -22 291 1 2129 262 27 56 chr11 41286643 41286716 -107496756 - L1PA16 LINE L1 -5251 2330 2256 355 333 10 14 chr11 41287028 41287240 -107496232 - L1PA16 LINE L1 -5276 2298 2083 845 354 57 38 chr11 41287253 41287852 -107495620 - L1PA16 LINE L1 -6177 1397 788 3048 222 65 25 chr11 41287859 41288670 -107494802 + L1MC3 LINE L1 6717 7560 -225 238 296 23 0 chr11 41288724 41288812 -107494660 + L1MC4 LINE L1 6614 6703 -1339 248 232 107 9 chr11 41288824 41288936 -107494536 + L1MC3 LINE L1 7576 7698 -87 337 248 0 73 chr11 41289371 41289386 -107494086 + L1ME3A LINE L1 5998 6013 -157 1992 164 48 26 chr11 41289386 41289801 -107493671 + MSTA LTR MaLR 3 426 -2 337 248 0 73 chr11 41289801 41289922 -107493550 + L1ME3A LINE L1 6013 6124 -46 1443 281 70 51 chr11 41290024 41290736 -107492736 - L1MC4a LINE L1 0 7808 7083 2216 158 14 59 chr11 41290761 41291440 -107492032 + L1MA4A LINE L1 4873 5524 -743 2728 159 66 24 chr11 41291446 41291533 -107491939 + L1MA4A LINE L1 5699 5781 -522 351 0 0 0 chr11 41291533 41291572 -107491900 + (CA)n Simple_repeat Simple_repeat 2 40 0 2728 159 66 24 chr11 41291572 41292063 -107491409 + L1MA4A LINE L1 5781 6301 -2 322 21 43 0 chr11 41293321 41293368 -107490104 + (TAAAA)n Simple_repeat Simple_repeat 4 52 0 242 282 115 0 chr11 41295100 41295178 -107488294 + MIR SINE MIR 67 153 -55 256 261 67 92 chr11 41295200 41295277 -107488195 + MIR3 SINE MIR 67 141 -67 1562 189 39 0 chr11 41295277 41295562 -107487910 + AluJb SINE Alu 1 296 -16 256 261 67 92 chr11 41295562 41295603 -107487869 + MIR3 SINE MIR 141 182 -26 852 147 71 43 chr11 41296619 41296803 -107486669 + MLT1B LTR MaLR 1 189 -201 369 75 0 0 chr11 41296803 41296856 -107486616 + (TC)n Simple_repeat Simple_repeat 2 54 0 841 236 15 10 chr11 41296862 41297065 -107486407 + MLT1B LTR MaLR 187 390 0 330 359 101 30 chr11 41297089 41297515 -107485957 + L2 LINE L2 2853 3308 -5 2341 151 59 2 chr11 41297985 41298390 -107485082 + MSTA LTR MaLR 1 428 0 900 257 5 10 chr11 41299020 41299226 -107484246 - MIR SINE MIR -56 206 2 4653 224 48 14 chr11 41299335 41300551 -107482921 + L1MC3 LINE L1 6509 7765 -20 208 103 0 51 chr11 41300689 41300728 -107482744 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 5295 142 12 11 chr11 41301500 41302565 -107480907 + L1PB4 LINE L1 4977 6181 -118 20221 63 8 1 chr11 41302565 41306025 -107477447 - L1PA6 LINE L1 -3 6151 2674 5295 142 12 11 chr11 41306025 41306142 -107477330 + L1PB4 LINE L1 6181 6296 -3 494 288 62 25 chr11 41306635 41306795 -107476677 + MIR3 SINE MIR 38 203 -5 254 358 125 24 chr11 41307367 41307822 -107475650 + L2 LINE L2 2112 2612 -702 2087 113 7 13 chr11 41308716 41309025 -107474447 + AluSc SINE Alu 1 307 -2 1074 132 11 11 chr11 41309025 41309199 -107474273 + AluSg/x SINE Alu 132 305 -5 329 140 11 43 chr11 41309204 41309297 -107474175 + L1MA4A LINE L1 6214 6303 0 1761 207 101 14 chr11 41310415 41310831 -107472641 - L1MC/D LINE L1 -558 5775 5324 815 137 29 7 chr11 41310837 41310976 -107472496 - FRAM SINE Alu -4 172 31 2531 241 37 1 chr11 41310977 41311657 -107471815 - L1MC/D LINE L1 -816 5330 4627 30 59 0 0 chr11 41311847 41311898 -107471574 + AT_rich Low_complexity Low_complexity 1 51 0 199 243 0 0 chr11 41312012 41312049 -107471423 + MIR SINE MIR 79 115 -147 298 263 50 0 chr11 41312112 41312196 -107471276 - MIR SINE MIR -62 146 64 2184 72 6 62 chr11 41312354 41312675 -107470797 - AluY SINE Alu -8 303 1 1547 240 54 14 chr11 41312994 41313440 -107470032 + L1M4 LINE L1 3741 4204 -1942 194 194 16 0 chr11 41313468 41313530 -107469942 + (TA)n Simple_repeat Simple_repeat 2 64 0 312 260 0 42 chr11 41313544 41313640 -107469832 + L1MC4 LINE L1 6611 6702 -1340 523 171 0 0 chr11 41313654 41313736 -107469736 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1044 150 0 6 chr11 41313734 41313907 -107469565 + Tigger3(Golem) DNA MER2_type 2721 2892 -137 621 246 97 121 chr11 41313908 41314519 -107468953 + LTR4 LTR ERV1 1 596 0 713 176 23 8 chr11 41314522 41314653 -107468819 + Tigger3(Golem) DNA MER2_type 2894 3026 -3 1568 244 6 8 chr11 41315252 41315616 -107467856 + MLT1A1 LTR MaLR 1 363 -2 23 33 0 0 chr11 41315807 41315837 -107467635 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 41315906 41315931 -107467541 + AT_rich Low_complexity Low_complexity 1 25 0 65 43 0 0 chr11 41315996 41316089 -107467383 + AT_rich Low_complexity Low_complexity 1 93 0 1744 186 27 0 chr11 41316112 41316413 -107467059 + AluJb SINE Alu 1 309 -3 25 0 0 0 chr11 41316766 41316791 -107466681 + AT_rich Low_complexity Low_complexity 1 25 0 793 292 64 40 chr11 41317227 41317617 -107465855 - MLT1J2 LTR MaLR -27 423 50 292 222 22 0 chr11 41317814 41317904 -107465568 - L1M4 LINE L1 -1062 5084 4993 1370 97 66 0 chr11 41317918 41318146 -107465326 + L1P LINE L1 5057 5299 -847 * 13154 28 4 0 chr11 41318145 41320081 -107463391 + L1P1 LINE L1 3817 5760 -395 2132 55 0 0 chr11 41320181 41320437 -107463035 - AluY SINE Alu -55 256 1 4521 214 29 22 chr11 41320437 41322439 -107461033 + L1M3f LINE L1 384 2419 -3909 1243 39 13 0 chr11 41322439 41322595 -107460877 + L1PA6 LINE L1 5993 6150 -4 4521 214 29 22 chr11 41322595 41323488 -107459984 + L1M3f LINE L1 2419 3304 -3024 8419 32 8 1 chr11 41323588 41325370 -107458102 + L1PA3 LINE L1 4363 6149 -6 26 50 0 0 chr11 41326986 41327026 -107456446 + AT_rich Low_complexity Low_complexity 1 40 0 195 178 67 0 chr11 41327383 41327428 -107456044 + MIR SINE MIR 117 164 -98 2089 145 0 0 chr11 41327592 41327903 -107455569 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 41328007 41328032 -107455440 + AT_rich Low_complexity Low_complexity 1 25 0 536 240 14 7 chr11 41328033 41328179 -107455293 + Charlie1a DNA MER1_type 50 196 -1259 477 148 167 9 chr11 41328179 41328287 -107455185 + L1M3f LINE L1 2 126 -5202 2237 112 0 0 chr11 41329306 41329600 -107453872 - AluSg SINE Alu -12 298 5 276 360 84 40 chr11 41329693 41329943 -107453529 - MIR SINE MIR -1 261 1 86 64 0 0 chr11 41330064 41330220 -107453252 + AT_rich Low_complexity Low_complexity 1 156 0 30 0 0 0 chr11 41330473 41330503 -107452969 + AT_rich Low_complexity Low_complexity 1 30 0 347 214 22 77 chr11 41330974 41331156 -107452316 + L1M4 LINE L1 4996 5167 -979 745 296 37 8 chr11 41331175 41331418 -107452054 + L1MB1 LINE L1 1 250 -6292 324 247 39 0 chr11 41331472 41331549 -107451923 + L1MB1 LINE L1 350 429 -6113 4754 254 93 35 chr11 41331553 41334480 -107448992 + L1MB1 LINE L1 3221 6355 -311 4483 131 20 57 chr11 41334582 41335226 -107448246 - L1PA14 LINE L1 -17 6144 5478 183 42 0 0 chr11 41335226 41335250 -107448222 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2079 97 4 0 chr11 41335250 41335528 -107447944 - AluSg SINE Alu -31 279 1 4483 131 20 57 chr11 41335528 41335712 -107447760 - L1PA14 LINE L1 -681 5480 5345 1439 246 31 18 chr11 41335715 41336171 -107447301 + L1P LINE L1 2902 3363 -2783 23 0 0 0 chr11 41336483 41336506 -107446966 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 41336575 41336604 -107446868 + AT_rich Low_complexity Low_complexity 1 29 0 4112 154 45 77 chr11 41337513 41338905 -107444567 + LTR12 LTR ERV1 5 714 0 884 233 58 54 chr11 41338993 41339377 -107444095 + MER67C LTR ERV1 1 403 -260 963 245 141 18 chr11 41339541 41340087 -107443385 - MER114 LTR ERV 0 648 36 379 298 48 66 chr11 41340422 41341075 -107442397 + L1M4 LINE L1 1256 1982 -4843 245 229 79 84 chr11 41341180 41341322 -107442150 + L1M4 LINE L1 1842 2059 -4585 362 253 83 74 chr11 41341387 41341616 -107441856 + L1M4 LINE L1 2440 2670 -3974 342 125 0 0 chr11 41341793 41341841 -107441631 - MLT1A1 LTR MaLR 0 365 318 244 125 62 38 chr11 41341979 41342059 -107441413 + (TA)n Simple_repeat Simple_repeat 2 83 0 21 89 0 0 chr11 41342061 41342117 -107441355 + AT_rich Low_complexity Low_complexity 1 56 0 5213 53 6 21 chr11 41342690 41343034 -107440438 + L1PA7 LINE L1 5482 5813 -341 2374 102 0 0 chr11 41343034 41343339 -107440133 + AluSx SINE Alu 1 305 -7 5213 53 6 21 chr11 41343339 41343675 -107439797 + L1PA7 LINE L1 5813 6152 -2 1805 158 145 18 chr11 41343712 41344019 -107439453 + MSTA LTR MaLR 1 366 -62 1684 64 0 0 chr11 41344019 41344239 -107439233 + L1PA5 LINE L1 5934 6153 -1 1805 158 145 18 chr11 41344239 41344311 -107439161 + MSTA LTR MaLR 366 428 0 468 262 62 65 chr11 41344506 41344815 -107438657 - L1M4 LINE L1 -1746 4400 4093 23 54 0 0 chr11 41344854 41344891 -107438581 + AT_rich Low_complexity Low_complexity 1 37 0 2275 91 3 40 chr11 41344895 41345247 -107438225 - L1PA13 LINE L1 -11 6152 5814 1115 24 0 0 chr11 41345247 41345370 -107438102 - AluYa5/8 SINE Alu -20 291 169 11759 191 26 16 chr11 41345379 41348491 -107434981 - L1PA13 LINE L1 -345 5818 2679 1999 140 35 24 chr11 41349880 41350251 -107433221 + THE1C LTR MaLR 1 375 0 1996 163 126 8 chr11 41350293 41350674 -107432798 + MSTA LTR MaLR 1 426 -2 8276 157 24 39 chr11 41350678 41352279 -107431193 + MSTA-int LTR MaLR 3 1579 -1 1666 176 146 8 chr11 41352280 41352656 -107430816 + MSTA LTR MaLR 1 428 0 1934 109 10 34 chr11 41353149 41353424 -107430048 + AluY SINE Alu 21 290 -21 225 0 0 0 chr11 41353424 41353449 -107430023 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 1934 109 10 34 chr11 41353449 41353466 -107430006 + AluY SINE Alu 290 306 -5 249 294 16 16 chr11 41353993 41354180 -107429292 - L1M4 LINE L1 -2906 3240 3054 266 268 18 0 chr11 41354612 41354724 -107428748 + L1M1 LINE L1 2652 2765 -4800 * 1231 311 42 40 chr11 41354709 41355263 -107428209 + L1M3e LINE L1 505 1059 -6430 250 282 48 10 chr11 41355382 41355485 -107427987 + L1M3e LINE L1 2305 2411 -5078 951 143 13 0 chr11 41355585 41355739 -107427733 - L1MC/D LINE L1 -2087 5698 5543 280 231 64 0 chr11 41355749 41355827 -107427645 - L1M4 LINE L1 -1924 4222 4140 1960 149 65 9 chr11 41355837 41356010 -107427462 + MER1B DNA MER1_type 1 163 -2549 1703 164 63 36 chr11 41356010 41356375 -107427097 - THE1C LTR MaLR 0 375 1 1960 149 65 9 chr11 41356375 41356522 -107426950 + MER1B DNA MER1_type 163 339 0 1763 267 31 40 chr11 41356549 41357377 -107426095 - L1M4 LINE L1 -2078 4068 3248 245 191 0 0 chr11 41357603 41357645 -107425827 - MER110A LTR ERV1 -4 464 423 424 283 44 28 chr11 41358112 41358292 -107425180 - MLT1E3 LTR MaLR -393 231 49 203 235 0 39 chr11 41358502 41358553 -107424919 + CT-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr11 41359600 41359621 -107423851 + AT_rich Low_complexity Low_complexity 1 21 0 24219 46 2 4 chr11 41360509 41363508 -107419964 + L1P LINE L1 1 2994 -3152 1327 114 15 0 chr11 41363608 41363810 -107419662 + L1PA10 LINE L1 5815 6019 -149 817 182 9 51 chr11 41363809 41364023 -107419449 + L1M3e LINE L1 3416 3620 -3945 * 1212 68 0 12 chr11 41364023 41364186 -107419286 + L1PA6 LINE L1 5991 6151 -3 250 56 0 0 chr11 41364152 41364188 -107419284 + L1PA5 LINE L1 6118 6153 -1 1011 107 7 0 chr11 41364196 41364346 -107419126 + L1PA8 LINE L1 6022 6172 0 * 1466 211 52 57 chr11 41364317 41364642 -107418830 + L1M3e LINE L1 4573 4895 -2670 2139 125 3 7 chr11 41364642 41364937 -107418535 + AluSx SINE Alu 1 294 -18 1466 211 52 57 chr11 41364937 41365169 -107418303 + L1M3e LINE L1 4895 5127 -2438 1404 226 83 16 chr11 41365169 41365673 -107417799 + Charlie1 DNA MER1_type 2223 2760 -1 591 266 70 33 chr11 41366359 41366630 -107416842 - L1ME2 LINE L1 -7 6157 5877 1174 293 36 4 chr11 41366636 41367086 -107416386 - L1ME2 LINE L1 -319 5845 5382 27 49 0 0 chr11 41367124 41367165 -107416307 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr11 41367225 41367254 -107416218 + AT_rich Low_complexity Low_complexity 1 29 0 273 281 209 22 chr11 41367254 41367532 -107415940 - L1ME2 LINE L1 -950 5196 4867 756 219 13 0 chr11 41367541 41367692 -107415780 + LTR69 LTR ERVL 1 153 -435 1988 133 7 7 chr11 41368388 41368689 -107414783 - AluSx SINE Alu -11 301 1 2236 113 0 3 chr11 41369198 41369571 -107413901 + AluSg SINE Alu 1 372 0 1961 193 6 53 chr11 41369960 41370427 -107413045 + MER65A LTR ERV1 1 445 0 294 316 51 6 chr11 41371138 41371304 -107412168 + L1ME LINE L1 5537 5704 -460 21 36 0 0 chr11 41371326 41371354 -107412118 + AT_rich Low_complexity Low_complexity 1 28 0 463 321 24 6 chr11 41374604 41374772 -107408700 - MIR SINE MIR -4 258 88 963 132 0 0 chr11 41375414 41375550 -107407922 - AluSq/x SINE Alu -175 138 3 1477 202 40 104 chr11 41375704 41376259 -107407213 + MLT2B1 LTR ERVL 1 519 -1 519 279 32 0 chr11 41376506 41376660 -107406812 - L1ME1 LINE L1 -5 6161 6003 494 250 104 42 chr11 41376667 41376859 -107406613 - MER46C DNA MER2_type -134 204 1 243 339 0 0 chr11 41377031 41377087 -107406385 + L2 LINE L2 3196 3251 -21 249 268 0 0 chr11 41377188 41377201 -107406271 + MER3 DNA MER1_type 35 47 -162 664 235 34 0 chr11 41377201 41377350 -107406122 - MER3 DNA MER1_type 0 209 56 307 319 65 22 chr11 41377509 41377647 -107405825 - MIR3 SINE MIR -62 146 3 1450 190 90 80 chr11 41378048 41378548 -107404924 - MLT1D LTR MaLR 0 505 1 1939 150 13 0 chr11 41378720 41379020 -107404452 + AluSp SINE Alu 1 304 -9 288 267 27 27 chr11 41379097 41379172 -107404300 - L2 LINE L2 -1 3312 3238 3183 137 22 2 chr11 41379202 41379697 -107403775 - LTR10B LTR ERV1 0 505 1 6836 274 32 26 chr11 41379697 41381763 -107401709 - LTR10B-int LTR ERV1 0 6649 4571 3743 216 38 27 chr11 41381871 41382751 -107400721 - HERVI LTR ERV1 -4890 1759 871 1778 262 40 35 chr11 41382780 41383384 -107400088 - HERVI LTR ERV1 -6662 1123 517 948 228 98 8 chr11 41383488 41383742 -107399730 - HERVI LTR ERV1 -6367 282 6 3163 124 24 16 chr11 41383744 41384245 -107399227 - LTR10B LTR ERV1 0 505 1 1791 225 49 14 chr11 41384336 41384829 -107398643 + L1MB7 LINE L1 5655 6164 -20 1172 170 30 0 chr11 41385090 41385320 -107398152 - L1P LINE L1 -4127 2019 1783 488 234 77 23 chr11 41385765 41385979 -107397493 - L1MEc LINE L1 -4982 1088 860 1723 182 47 11 chr11 41386003 41386365 -107397107 - THE1C LTR MaLR 0 375 1 2196 137 6 11 chr11 41386365 41386722 -107396750 - THE1C-int LTR MaLR 0 1580 1226 364 250 50 10 chr11 41386722 41386822 -107396650 + MLT1I LTR MaLR 306 409 0 1064 43 0 14 chr11 41387848 41387988 -107395484 + L1PA5 LINE L1 6017 6154 0 23 0 0 0 chr11 41389511 41389534 -107393938 + AT_rich Low_complexity Low_complexity 1 23 0 192 385 13 0 chr11 41389657 41389735 -107393737 - MIR SINE MIR -66 142 64 217 380 25 8 chr11 41390109 41390230 -107393242 - MIR3 SINE MIR -10 198 76 191 161 18 0 chr11 41390389 41390445 -107393027 + (TA)n Simple_repeat Simple_repeat 1 57 0 192 312 0 0 chr11 41391080 41391173 -107392299 + (TA)n Simple_repeat Simple_repeat 2 94 0 233 210 16 0 chr11 41391319 41391381 -107392091 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 234 207 103 0 chr11 41391394 41391452 -107392020 + L1MC3 LINE L1 6583 6646 -1139 1510 205 27 56 chr11 41391516 41391892 -107391580 - MLT2D LTR ERVL -48 366 2 395 289 122 30 chr11 41391894 41392157 -107391315 + L1M4 LINE L1 4061 4347 -1799 1352 101 96 0 chr11 41392582 41392791 -107390681 - MER30 DNA MER1_type -1 229 1 31 58 0 0 chr11 41392848 41392900 -107390572 + AT_rich Low_complexity Low_complexity 1 52 0 2488 128 5 8 chr11 41394985 41395361 -107388111 - THE1C LTR MaLR 0 375 1 351 0 0 0 chr11 41395430 41395469 -107388003 + (TG)n Simple_repeat Simple_repeat 2 40 0 616 271 141 7 chr11 41395835 41396134 -107387338 + MER58B DNA MER1_type 2 340 -1 1327 276 59 51 chr11 41396951 41397696 -107385776 + MER97c DNA MER1_type? 6 756 -334 3865 268 52 29 chr11 41397731 41399122 -107384350 + L1M4 LINE L1 17 1440 -5102 2698 124 143 126 chr11 41399124 41400302 -107383170 - LTR12 LTR ERV1 0 1523 9 1462 292 8 10 chr11 41400348 41400834 -107382638 + L1M4 LINE L1 1432 1916 -4730 458 315 83 90 chr11 41400834 41401542 -107381930 + L1MDa LINE L1 19 721 -5819 3193 219 43 47 chr11 41402023 41402760 -107380712 - L1MC3 LINE L1 -743 5403 5529 2260 80 17 7 chr11 41402760 41403059 -107380413 + AluY SINE Alu 4 305 -6 3193 219 43 47 chr11 41403059 41404212 -107379260 - L1MC3 LINE L1 -616 5530 4374 869 226 163 26 chr11 41404227 41404608 -107378864 - L1MC3 LINE L1 -1910 4236 3804 221 320 175 26 chr11 41404625 41404819 -107378653 - L3 LINE CR1 -733 844 622 258 304 103 92 chr11 41404986 41405259 -107378213 - L3 LINE CR1 -1039 538 263 1923 232 37 5 chr11 41406007 41406438 -107377034 - MER68 LTR ERV1 -1 561 117 351 253 55 71 chr11 41406592 41406774 -107376698 + MIR SINE MIR 23 201 -61 369 0 0 0 chr11 41407897 41407938 -107375534 + (TG)n Simple_repeat Simple_repeat 2 42 0 361 235 12 0 chr11 41408002 41408083 -107375389 + MLT1F LTR MaLR 1 82 -460 500 280 151 5 chr11 41408206 41408392 -107375080 + MLT1F LTR MaLR 240 452 -90 264 77 0 0 chr11 41408407 41408446 -107375026 + (A)n Simple_repeat Simple_repeat 1 39 0 21 71 0 0 chr11 41408804 41408846 -107374626 + AT_rich Low_complexity Low_complexity 1 42 0 298 338 99 40 chr11 41409054 41409255 -107374217 + L2 LINE L2 2728 2940 -374 241 367 25 35 chr11 41409413 41409612 -107373860 + L2 LINE L2 3117 3313 0 1565 166 176 166 chr11 41409702 41410711 -107372761 + LTR28 LTR ERV1 1 1020 0 2307 67 3 3 chr11 41411584 41411884 -107371588 - AluY SINE Alu -11 300 1 187 402 0 0 chr11 41412284 41412371 -107371101 - MIR SINE MIR -88 120 34 24 0 0 0 chr11 41412925 41412949 -107370523 + AT_rich Low_complexity Low_complexity 1 24 0 338 389 50 13 chr11 41413055 41413294 -107370178 + MIR SINE MIR 2 249 -13 1466 224 49 58 chr11 41413605 41414107 -107369365 + MLT1F1 LTR MaLR 1 542 0 214 205 0 51 chr11 41414424 41414502 -107368970 + T-rich Low_complexity Low_complexity 2 75 0 198 143 0 0 chr11 41415040 41415075 -107368397 + (TG)n Simple_repeat Simple_repeat 2 36 0 417 136 171 0 chr11 41417092 41417180 -107366292 - AluSx SINE Alu -14 295 193 1013 121 0 0 chr11 41417186 41417327 -107366145 - AluSx SINE Alu -171 141 1 35 41 0 0 chr11 41417935 41417984 -107365488 + AT_rich Low_complexity Low_complexity 1 49 0 5600 196 50 15 chr11 41418001 41418855 -107364617 - L1MC1 LINE L1 -5 6328 5402 718 215 168 47 chr11 41418855 41419236 -107364236 - MSTC LTR MaLR -1 427 1 5600 196 50 15 chr11 41419236 41419859 -107363613 - L1MC1 LINE L1 -931 5402 4802 278 353 114 6 chr11 41419880 41420047 -107363425 - MIR SINE MIR -56 206 22 1980 103 0 0 chr11 41420324 41420585 -107362887 + AluSg SINE Alu 40 300 -10 347 306 56 65 chr11 41421858 41422090 -107361382 + HAL1b LINE L1 684 913 -435 7542 204 87 25 chr11 41422755 41424405 -107359067 - MER52A LTR ERV1 -3 1752 1 797 194 78 119 chr11 41424456 41424759 -107358713 - MLT1A1 LTR MaLR -1 364 76 1845 89 55 30 chr11 41424759 41425064 -107358408 + AluSc SINE Alu 1 312 0 797 194 78 119 chr11 41425064 41425120 -107358352 - MLT1A1 LTR MaLR -289 76 19 26 0 0 0 chr11 41426120 41426146 -107357326 + AT_rich Low_complexity Low_complexity 1 26 0 338 74 19 0 chr11 41426335 41426389 -107357083 + (GA)n Simple_repeat Simple_repeat 2 56 0 1684 239 88 7 chr11 41426401 41426823 -107356649 - MLT2B1 LTR ERVL -64 456 1 427 309 31 26 chr11 41426950 41427144 -107356328 + L1ME LINE L1 490 684 -5846 571 289 72 59 chr11 41427234 41427773 -107355699 + L1ME LINE L1 1268 1813 -4727 258 292 0 0 chr11 41428447 41428519 -107354953 + MLT1-int LTR MaLR 401 472 -899 396 283 9 0 chr11 41429010 41429116 -107354356 - L1MC4 LINE L1 -1219 6823 6717 267 54 0 0 chr11 41429565 41429602 -107353870 + (CA)n Simple_repeat Simple_repeat 1 37 0 715 84 39 13 chr11 41430392 41430546 -107352926 + (TAGA)n Simple_repeat Simple_repeat 2 159 0 669 161 124 7 chr11 41430556 41430693 -107352779 - LTR40a LTR ERVL -366 153 1 22 70 0 0 chr11 41430879 41430922 -107352550 + AT_rich Low_complexity Low_complexity 1 43 0 10485 183 38 14 chr11 41430952 41433499 -107349973 - L1MA6 LINE L1 -6 6294 3809 225 0 0 0 chr11 41433499 41433524 -107349948 + (TTG)n Simple_repeat Simple_repeat 3 27 0 10485 183 38 14 chr11 41433524 41433921 -107349551 - L1MA6 LINE L1 -2491 3809 3423 1979 126 3 20 chr11 41433921 41434215 -107349257 - AluSp SINE Alu -24 289 1 10485 183 38 14 chr11 41434215 41434464 -107349008 - L1MA6 LINE L1 -2877 3423 3181 1787 236 31 9 chr11 41434464 41434887 -107348585 + MSTB1 LTR MaLR 1 432 0 10485 183 38 14 chr11 41434887 41434977 -107348495 - L1MA6 LINE L1 -3119 3181 2924 3994 183 27 10 chr11 41434973 41435956 -107347516 - L1MA4 LINE L1 -251 7468 6473 * 1147 231 51 35 chr11 41435958 41436412 -107347060 - L1MA4 LINE L1 -3957 3608 3148 1838 266 21 22 chr11 41436416 41437092 -107346380 - L1MA4 LINE L1 -4637 2928 2254 781 307 130 22 chr11 41437491 41438090 -107345382 - L1ME2 LINE L1 -25 6139 5476 413 238 28 49 chr11 41438099 41438242 -107345230 - L1PB4 LINE L1 -6 6150 6011 675 234 88 87 chr11 41438249 41438774 -107344698 - L1ME2 LINE L1 -677 5487 4971 209 231 33 22 chr11 41438782 41438873 -107344599 + (TA)n Simple_repeat Simple_repeat 2 93 0 243 333 48 12 chr11 41438873 41439038 -107344434 - L1ME2 LINE L1 -1207 4939 4769 28 61 0 0 chr11 41439318 41439367 -107344105 + AT_rich Low_complexity Low_complexity 1 49 0 1356 247 46 56 chr11 41439715 41440217 -107343255 + MLT1D LTR MaLR 9 505 0 2130 101 14 0 chr11 41440517 41440804 -107342668 + AluSg SINE Alu 1 291 -19 264 77 0 0 chr11 41442432 41442471 -107341001 + (TG)n Simple_repeat Simple_repeat 2 40 0 341 286 79 14 chr11 41442680 41442820 -107340652 + MIR SINE MIR 113 261 -1 2233 94 0 0 chr11 41443935 41444221 -107339251 + AluSg SINE Alu 9 294 -16 20651 158 22 13 chr11 41444474 41452012 -107331460 + L1MA3 LINE L1 17 7724 0 384 281 81 36 chr11 41452263 41452460 -107331012 - L2 LINE L2 0 3313 3104 276 30 0 0 chr11 41452460 41452493 -107330979 + (TG)n Simple_repeat Simple_repeat 1 33 0 384 281 81 36 chr11 41452493 41452516 -107330956 - L2 LINE L2 -209 3104 3083 1260 328 57 11 chr11 41452566 41453127 -107330345 - L2 LINE L2 -781 2533 1947 2314 164 93 73 chr11 41453611 41454213 -107329259 + LTR18B LTR ERVL 1 614 0 234 327 19 37 chr11 41454482 41454589 -107328883 + L2 LINE L2 3164 3268 -4 23 0 0 0 chr11 41455204 41455227 -107328245 + AT_rich Low_complexity Low_complexity 1 23 0 250 205 12 36 chr11 41455336 41455419 -107328053 + A-rich Low_complexity Low_complexity 3 83 0 285 316 53 53 chr11 41456473 41456587 -107326885 + MIR SINE MIR 58 174 -88 2207 119 36 30 chr11 41456587 41456949 -107326523 + THE1B LTR MaLR 1 364 0 285 316 53 53 chr11 41456949 41457021 -107326451 + MIR SINE MIR 173 244 -18 313 222 139 19 chr11 41457417 41457525 -107325947 + MIR SINE MIR 127 247 -15 222 267 198 0 chr11 41458745 41458831 -107324641 - MER5A DNA MER1_type -77 112 10 851 181 39 34 chr11 41458852 41459056 -107324416 + MER3 DNA MER1_type 5 209 0 689 220 83 0 chr11 41459264 41459432 -107324040 + MIR SINE MIR 49 230 -32 553 211 88 4 chr11 41459522 41459760 -107323712 - L1ME2 LINE L1 -14 6150 5847 759 206 92 32 chr11 41459766 41459984 -107323488 - L1ME2 LINE L1 -362 5802 5572 1592 236 62 24 chr11 41459991 41460491 -107322981 + LTR40a LTR ERVL 1 519 0 596 289 17 60 chr11 41460652 41460884 -107322588 + HERVL40 LTR ERVL 198 419 -5111 1109 139 29 2 chr11 41461363 41461655 -107321817 + THE1C LTR MaLR 1 375 0 3366 323 30 33 chr11 41461700 41462998 -107320474 + HERVL40 LTR ERVL 1593 2886 -2644 1212 247 7 27 chr11 41462998 41463298 -107320174 + HERVL40 LTR ERVL 3009 3302 -2228 466 312 67 18 chr11 41463364 41463646 -107319826 - L1ME2 LINE L1 -1012 5134 4839 26 0 0 0 chr11 41463655 41463681 -107319791 + AT_rich Low_complexity Low_complexity 1 26 0 522 156 10 0 chr11 41463797 41463893 -107319579 + L1PBa LINE L1 2788 2884 -3979 * 1960 170 6 99 chr11 41463889 41464383 -107319089 + L1 LINE L1 3016 3463 -3399 29 101 0 0 chr11 41464599 41464698 -107318774 + AT_rich Low_complexity Low_complexity 1 99 0 1796 172 38 0 chr11 41465139 41465511 -107317961 - L1MA4 LINE L1 -4 6296 5911 232 294 25 34 chr11 41466124 41466243 -107317229 + GA-rich Low_complexity Low_complexity 4 121 0 2418 38 6 19 chr11 41466511 41466824 -107316648 + AluY SINE Alu 1 309 -2 3626 109 19 2 chr11 41467519 41468049 -107315423 + L1PA10 LINE L1 5624 6162 -6 392 305 87 92 chr11 41468089 41468689 -107314783 - HAL1 LINE L1 -47 2460 1864 438 284 121 16 chr11 41468696 41468886 -107314586 + HAL1 LINE L1 981 1190 -1317 228 358 0 37 chr11 41469213 41469322 -107314150 - L2 LINE L2 -213 3059 2955 22 0 0 0 chr11 41470861 41470883 -107312589 + AT_rich Low_complexity Low_complexity 1 22 0 3043 54 0 3 chr11 41470961 41471349 -107312123 - L1PA4 LINE L1 0 6155 5769 871 0 0 0 chr11 41471349 41471446 -107312026 + L1PA4 LINE L1 5696 5792 -363 209 306 61 10 chr11 41471458 41471556 -107311916 - MIR SINE MIR -56 206 104 465 298 135 14 chr11 41471568 41471783 -107311689 + MIR SINE MIR 13 253 -9 192 341 12 35 chr11 41471792 41471877 -107311595 - MIR SINE MIR -160 102 20 1636 99 12 56 chr11 41472673 41472925 -107310547 - AluSg SINE Alu -16 294 54 245 342 61 56 chr11 41473144 41473340 -107310132 - L2 LINE L2 -969 2345 2149 769 266 104 29 chr11 41473720 41474210 -107309262 - MLT2E LTR ERVL -4 624 10 351 0 0 0 chr11 41474297 41474336 -107309136 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1614 174 4 4 chr11 41474462 41474726 -107308746 - AluJb SINE Alu -38 274 11 730 147 0 20 chr11 41476001 41476151 -107307321 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3482 22 0 2 chr11 41476566 41476980 -107306492 - L1PA2 LINE L1 -1 6154 5742 3393 17 0 0 chr11 41476980 41477392 -107306080 + L1P LINE L1 2760 3171 -2975 23 0 0 0 chr11 41478221 41478244 -107305228 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr11 41478340 41478374 -107305098 + AT_rich Low_complexity Low_complexity 1 34 0 6376 82 7 21 chr11 41478468 41480090 -107303382 + L1PA7 LINE L1 4530 6150 -4 1230 146 0 0 chr11 41480752 41480937 -107302535 + AluY SINE Alu 105 289 -22 21 36 0 0 chr11 41481036 41481064 -107302408 + AT_rich Low_complexity Low_complexity 1 28 0 373 250 79 72 chr11 41482372 41482524 -107300948 - MIR3 SINE MIR -38 170 18 23 0 0 29 chr11 41483405 41483422 -107300050 + AT_rich Low_complexity Low_complexity 1 17 -16 1937 113 3 27 chr11 41483422 41483715 -107299757 - AluSg SINE Alu -24 286 1 23 0 0 29 chr11 41483715 41483731 -107299741 + AT_rich Low_complexity Low_complexity 17 33 0 24 53 0 0 chr11 41484078 41484116 -107299356 + AT_rich Low_complexity Low_complexity 1 38 0 219 178 27 27 chr11 41484262 41484335 -107299137 + (TA)n Simple_repeat Simple_repeat 2 74 0 205 300 0 14 chr11 41484705 41484775 -107298697 + GA-rich Low_complexity Low_complexity 2 70 0 1450 212 37 3 chr11 41485228 41485577 -107297895 - L1MA8 LINE L1 -7 6284 5924 2341 151 5 51 chr11 41485577 41485628 -107297844 - MSTA LTR MaLR 0 428 376 2194 106 7 0 chr11 41485628 41485921 -107297551 - AluSp SINE Alu -16 297 3 2341 151 5 51 chr11 41485921 41486318 -107297154 - MSTA LTR MaLR -52 376 1 1211 122 37 11 chr11 41486319 41486508 -107296964 - MSTA LTR MaLR -234 194 1 8141 207 18 11 chr11 41486508 41488071 -107295401 - MSTA-int LTR MaLR 0 1651 79 2388 164 25 2 chr11 41488071 41488467 -107295005 - MSTA LTR MaLR -23 405 1 1401 204 7 7 chr11 41488467 41488751 -107294721 - L1MA8 LINE L1 -363 5928 5645 268 336 10 0 chr11 41488751 41488855 -107294617 - Tigger5 DNA MER2_type 0 2323 2219 3446 214 26 6 chr11 41488904 41490007 -107293465 - L1MA8 LINE L1 -665 5647 4518 1750 188 57 31 chr11 41490010 41490548 -107292924 + MLT2A2 LTR ERVL 1 554 0 1300 179 84 3 chr11 41490552 41490849 -107292623 - L1MA8 LINE L1 -1629 4517 4197 1109 268 151 22 chr11 41490851 41491847 -107291625 + L1M4c LINE L1 1522 2664 -3718 288 146 17 67 chr11 41491851 41492029 -107291443 + (TA)n Simple_repeat Simple_repeat 2 170 0 5918 231 44 32 chr11 41492029 41493791 -107289681 + L1M4c LINE L1 2683 4465 -1917 24 53 0 0 chr11 41493839 41493877 -107289595 + AT_rich Low_complexity Low_complexity 1 38 0 1374 206 18 18 chr11 41494871 41495189 -107288283 + AluJo SINE Alu 1 318 0 22 35 0 0 chr11 41496909 41496938 -107286534 + AT_rich Low_complexity Low_complexity 1 29 0 1435 200 51 51 chr11 41497340 41497730 -107285742 + MLT1B LTR MaLR 1 390 0 1584 227 69 87 chr11 41498387 41498951 -107284521 + MLT2B3 LTR ERVL 1 554 0 245 362 107 12 chr11 41499008 41499251 -107284221 + L2 LINE L2 389 654 -2660 2573 178 8 6 chr11 41499343 41499833 -107283639 - L1MB3 LINE L1 -4 6179 5689 185 138 0 0 chr11 41500194 41500223 -107283249 + L2 LINE L2 3285 3313 0 23 0 0 0 chr11 41501209 41501232 -107282240 + AT_rich Low_complexity Low_complexity 1 23 0 2006 134 3 3 chr11 41501303 41501630 -107281842 - AluSq SINE Alu 0 327 1 228 282 51 0 chr11 41501635 41501713 -107281759 - L2 LINE L2 -12 3301 3220 892 256 9 5 chr11 41501828 41502047 -107281425 - MER58A DNA MER1_type 0 224 5 192 396 65 0 chr11 41502204 41502358 -107281114 + MIR SINE MIR 52 215 -47 834 309 26 8 chr11 41502372 41502637 -107280835 - HERV16 LTR ERVL -2538 3116 2847 1087 306 83 30 chr11 41502794 41503334 -107280138 - HERV16 LTR ERVL -4157 839 271 538 329 118 24 chr11 41503577 41503957 -107279515 - LTR16A LTR ERVL -7 443 28 25 65 0 0 chr11 41505353 41505399 -107278073 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr11 41505493 41505521 -107277951 + AT_rich Low_complexity Low_complexity 1 28 0 519 308 75 9 chr11 41505534 41505748 -107277724 - MIR SINE MIR -10 252 25 25 31 0 0 chr11 41505748 41505780 -107277692 + AT_rich Low_complexity Low_complexity 1 32 0 426 207 52 43 chr11 41506390 41506506 -107276966 + Charlie5 DNA MER1_type 1 117 -2495 22 35 0 0 chr11 41506506 41506535 -107276937 + AT_rich Low_complexity Low_complexity 1 29 0 1176 241 114 33 chr11 41506665 41507155 -107276317 + L1ME1 LINE L1 5618 6147 -19 851 276 91 13 chr11 41507176 41507705 -107275767 + L1MB1 LINE L1 2590 3159 -2987 7359 211 39 27 chr11 41507709 41509849 -107273623 + L1MB1 LINE L1 3318 5496 -672 2103 95 0 16 chr11 41509849 41510165 -107273307 + AluY SINE Alu 1 311 0 7359 211 39 27 chr11 41510165 41510810 -107272662 + L1MB1 LINE L1 5496 6131 -37 825 164 34 0 chr11 41510825 41510971 -107272501 + Tigger5 DNA MER2_type 2153 2303 -20 252 151 57 0 chr11 41510990 41511043 -107272429 + L1MA10 LINE L1 6271 6326 -8 4039 162 16 55 chr11 41511196 41512053 -107271419 - L1PB4 LINE L1 0 6156 5333 738 113 81 16 chr11 41512041 41512165 -107271307 - L1PA16 LINE L1 -310 5856 5725 * 5069 220 34 7 chr11 41512245 41513121 -107270351 - L1PB4 LINE L1 -842 5304 4382 369 93 0 0 chr11 41513121 41513175 -107270297 + (TG)n Simple_repeat Simple_repeat 2 55 0 5069 220 34 7 chr11 41513175 41513556 -107269916 - L1PB4 LINE L1 -1764 4382 4013 240 308 101 14 chr11 41513765 41514041 -107269431 + L1ME2 LINE L1 4826 5125 -1021 2113 242 96 26 chr11 41514122 41514969 -107268503 + L1ME2 LINE L1 5277 6164 0 232 333 82 0 chr11 41514976 41515111 -107268361 - L2 LINE L2 -956 2358 2213 528 30 0 0 chr11 41515532 41515598 -107267874 + (TA)n Simple_repeat Simple_repeat 1 66 0 475 214 26 0 chr11 41516612 41516729 -107266743 + L1MC1 LINE L1 6208 6327 -6 29 28 0 0 chr11 41516919 41516955 -107266517 + AT_rich Low_complexity Low_complexity 1 36 0 222 237 246 35 chr11 41517729 41517843 -107265629 + MIR3 SINE MIR 4 141 -67 21 71 0 0 chr11 41518700 41518742 -107264730 + AT_rich Low_complexity Low_complexity 1 42 0 279 254 36 18 chr11 41519267 41519377 -107264095 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 0 0 0 chr11 41519493 41519517 -107263955 + (T)n Simple_repeat Simple_repeat 1 24 0 37 23 0 0 chr11 41520682 41520726 -107262746 + AT_rich Low_complexity Low_complexity 1 44 0 6833 262 122 59 chr11 41521921 41523634 -107259838 - LTR52-int LTR ERVL -205 3351 1748 1226 222 57 72 chr11 41523634 41524147 -107259325 - MLT1D LTR MaLR 0 505 1 6833 262 122 59 chr11 41524147 41525582 -107257890 - LTR52-int LTR ERVL -1808 1748 3 454 189 9 54 chr11 41525622 41525670 -107257802 - LTR52 LTR ERVL -41 380 331 1167 262 2 60 chr11 41525670 41526067 -107257405 - MLT1A2 LTR MaLR 0 374 1 454 189 9 54 chr11 41526067 41526129 -107257343 - LTR52 LTR ERVL -90 331 275 297 245 27 136 chr11 41526198 41526345 -107257127 + MLT1H LTR MaLR 382 512 -37 32 0 0 0 chr11 41526850 41526882 -107256590 + AT_rich Low_complexity Low_complexity 1 32 0 2393 67 3 0 chr11 41527777 41528077 -107255395 - AluY SINE Alu -10 301 1 359 372 44 31 chr11 41528878 41529171 -107254301 + L2 LINE L2 1801 2097 -1217 925 172 11 111 chr11 41531111 41531390 -107252082 - L1MB8 LINE L1 0 6178 5928 1567 228 0 3 chr11 41531409 41531743 -107251729 - L1MA6 LINE L1 -238 6062 5730 218 360 13 0 chr11 41531795 41531870 -107251602 + MIR3 SINE MIR 84 159 -49 2391 70 0 0 chr11 41532019 41532319 -107251153 + AluY SINE Alu 1 300 -11 204 292 97 0 chr11 41533076 41533148 -107250324 - MIR SINE MIR -27 235 157 365 119 30 99 chr11 41534323 41534393 -107249079 - L1PA11 LINE L1 -3 6171 6109 2372 144 6 0 chr11 41534393 41534755 -107248717 + THE1B LTR MaLR 1 364 0 365 119 30 99 chr11 41534755 41534785 -107248687 - L1PA11 LINE L1 -65 6109 6078 2565 87 2 174 chr11 41534785 41535325 -107248147 + THE1B-int LTR MaLR 32 478 -1102 207 139 0 0 chr11 41535593 41535629 -107247843 + (TG)n Simple_repeat Simple_repeat 1 36 0 504 243 40 34 chr11 41535794 41535942 -107247530 - MIR SINE MIR -112 150 2 26 0 0 0 chr11 41536298 41536324 -107247148 + AT_rich Low_complexity Low_complexity 1 26 0 2987 126 2 9 chr11 41536678 41537122 -107246350 + MLT2A2 LTR ERVL 1 441 -12 315 345 73 19 chr11 41537485 41537691 -107245781 - MIR SINE MIR -26 236 20 318 265 61 75 chr11 41538119 41538266 -107245206 - MIR SINE MIR -69 193 49 1656 169 29 0 chr11 41538626 41538904 -107244568 - AluJb SINE Alu -26 286 1 481 67 13 13 chr11 41539375 41539450 -107244022 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 4717 208 66 35 chr11 41539507 41540532 -107242940 - L1MA10 LINE L1 0 6334 5342 189 74 0 0 chr11 41540532 41540559 -107242913 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4717 208 66 35 chr11 41540559 41541903 -107241569 - L1MA10 LINE L1 -992 5342 3894 661 310 73 58 chr11 41542045 41542132 -107241340 - LTR16C LTR ERVL 0 491 407 2108 195 42 2 chr11 41542132 41542542 -107240930 - MSTB LTR MaLR 0 426 1 661 310 73 58 chr11 41542542 41542783 -107240689 - LTR16C LTR ERVL -84 407 158 258 271 6 83 chr11 41543030 41543211 -107240261 + L1MDa LINE L1 235 401 -6139 1470 196 54 8 chr11 41543660 41544033 -107239439 + L1MDa LINE L1 1623 2012 -4528 260 343 9 0 chr11 41544203 41544305 -107239167 + MLT1I LTR MaLR 1 103 -306 382 284 63 0 chr11 41544305 41544432 -107239040 - MLT1H LTR MaLR 0 549 415 242 330 165 23 chr11 41544600 41544818 -107238654 + MLT1I LTR MaLR 158 406 -3 439 360 43 27 chr11 41545001 41545301 -107238171 + HERV16 LTR ERVL 1665 1969 -3027 270 287 73 79 chr11 41545304 41545468 -107238004 + L2 LINE L2 2587 2749 -565 826 295 70 56 chr11 41545471 41545702 -107237770 - L1MDa LINE L1 -4470 1610 1384 2113 100 0 28 chr11 41545702 41546022 -107237450 - AluY SINE Alu 0 311 1 2357 99 3 0 chr11 41546025 41546337 -107237135 - AluSp SINE Alu 0 313 1 826 295 70 56 chr11 41546337 41546916 -107236556 - L1MDa LINE L1 -4697 1383 810 407 159 35 0 chr11 41546916 41547029 -107236443 + (TA)n Simple_repeat Simple_repeat 2 118 0 1314 303 70 39 chr11 41547030 41547806 -107235666 - L1MDa LINE L1 -5269 801 2 273 396 71 5 chr11 41547817 41548014 -107235458 + L2 LINE L2 2762 2971 -343 2400 188 40 30 chr11 41548027 41548570 -107234902 + LTR60 LTR ERV1 1 549 -37 351 200 82 67 chr11 41548462 41548597 -107234875 + TAR1 Satellite telomeric 49 185 -1926 * 992 234 77 29 chr11 41548882 41549194 -107234278 + LTR60-int LTR ERV1 1081 1407 -3391 581 256 71 42 chr11 41549735 41550027 -107233445 + LTR60-int LTR ERV1 1543 1828 -5263 2501 247 42 18 chr11 41550044 41551211 -107232261 + LTR60-int LTR ERV1 2595 4038 -842 365 340 33 38 chr11 41552116 41552484 -107230988 + LTR60-int LTR ERV1 6085 6450 -226 2643 196 7 37 chr11 41552728 41553301 -107230171 + LTR60 LTR ERV1 1 556 -30 2167 82 6 25 chr11 41553564 41553879 -107229593 - AluY SINE Alu -1 310 2 310 188 43 0 chr11 41554102 41554171 -107229301 - L1MB8 LINE L1 -6 6172 6101 1573 219 99 67 chr11 41554401 41554936 -107228536 + MLT2B3 LTR ERVL 3 554 0 28 48 0 0 chr11 41555136 41555178 -107228294 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 41556179 41556224 -107227248 + AT_rich Low_complexity Low_complexity 1 45 0 206 121 0 0 chr11 41557097 41557130 -107226342 + (T)n Simple_repeat Simple_repeat 1 33 0 180 306 48 0 chr11 41557426 41557488 -107225984 - MIR SINE MIR -77 185 121 1813 138 3 7 chr11 41557509 41557798 -107225674 + AluSx SINE Alu 1 288 -24 23 68 0 0 chr11 41557865 41557909 -107225563 + AT_rich Low_complexity Low_complexity 1 44 0 339 268 202 25 chr11 41557923 41558121 -107225351 - MIR SINE MIR -21 241 9 2272 115 0 0 chr11 41558680 41558992 -107224480 + AluSx SINE Alu 1 312 0 235 209 0 0 chr11 41559336 41559379 -107224093 - L1 LINE L1 -1390 4756 4714 952 223 14 0 chr11 41559476 41559691 -107223781 - L1 LINE L1 -1390 4756 4539 214 374 89 0 chr11 41559748 41559871 -107223601 + L2 LINE L2 3179 3312 -1 26 50 0 0 chr11 41560178 41560218 -107223254 + AT_rich Low_complexity Low_complexity 1 40 0 1860 165 50 70 chr11 41560506 41560705 -107222767 + MLT2A2 LTR ERVL 1 202 -352 1900 160 0 3 chr11 41560705 41561005 -107222467 + AluSx SINE Alu 6 304 -8 1860 165 50 70 chr11 41561005 41561359 -107222113 + MLT2A2 LTR ERVL 202 554 0 264 210 39 63 chr11 41561364 41561517 -107221955 + MLT1B LTR MaLR 1 203 -187 2216 105 3 0 chr11 41561517 41561821 -107221651 + AluSp SINE Alu 1 305 -8 264 210 39 63 chr11 41561821 41561885 -107221587 + MLT1B LTR MaLR 203 267 -123 321 100 0 0 chr11 41562073 41562123 -107221349 + (GGA)n Simple_repeat Simple_repeat 3 52 0 772 310 112 66 chr11 41562153 41562714 -107220758 + MLT1E LTR MaLR 3 589 -4 230 289 78 7 chr11 41562920 41563062 -107220410 + L1MCc LINE L1 1375 1526 -4897 25 31 0 0 chr11 41563138 41563170 -107220302 + AT_rich Low_complexity Low_complexity 1 32 0 277 278 87 52 chr11 41563242 41563415 -107220057 + L1MCc LINE L1 1869 2047 -4896 259 299 26 8 chr11 41563511 41563628 -107219844 + L1MCc LINE L1 2426 2544 -4578 317 329 14 41 chr11 41563688 41563834 -107219638 + L1MCc LINE L1 2640 2781 -4341 300 176 0 0 chr11 41563861 41563929 -107219543 + GA-rich Low_complexity Low_complexity 1 68 0 241 214 45 11 chr11 41563931 41564020 -107219452 + L1MCc LINE L1 2925 3016 -4106 477 195 62 55 chr11 41564218 41564393 -107219079 - L1ME2 LINE L1 -130 6034 5843 2233 99 3 0 chr11 41564468 41564770 -107218702 - AluSq SINE Alu -10 303 1 953 153 79 61 chr11 41565242 41565471 -107218001 - L1MA8 LINE L1 -162 6129 5897 416 204 40 79 chr11 41565464 41565616 -107217856 + L1MA8 LINE L1 6105 6250 -41 * 44 35 0 0 chr11 41566070 41566128 -107217344 + AT_rich Low_complexity Low_complexity 1 58 0 581 259 155 7 chr11 41567218 41567508 -107215964 - MER69 DNA AcHobo -186 2340 2008 682 315 69 77 chr11 41567522 41568042 -107215430 - MER69 DNA AcHobo -1984 542 27 16191 140 22 22 chr11 41568240 41568686 -107214786 + Tigger4(Zombi) DNA MER2_type 12 457 -2274 2193 137 0 0 chr11 41568686 41568999 -107214473 + AluSq SINE Alu 1 313 0 16191 140 22 22 chr11 41568999 41571272 -107212200 + Tigger4(Zombi) DNA MER2_type 456 2731 0 219 333 87 7 chr11 41571737 41571875 -107211597 - MIR SINE MIR -8 254 106 189 339 0 17 chr11 41572865 41572924 -107210548 - L2 LINE L2 0 3272 3215 237 178 0 0 chr11 41573564 41573609 -107209863 + (TG)n Simple_repeat Simple_repeat 1 45 0 26 0 0 0 chr11 41574107 41574133 -107209339 + AT_rich Low_complexity Low_complexity 1 26 0 222 357 102 6 chr11 41574826 41574983 -107208489 - MIR SINE MIR -17 245 74 2182 120 0 3 chr11 41575026 41575327 -107208145 - AluSp SINE Alu -13 300 1 1349 203 6 63 chr11 41575564 41575880 -107207592 + AluJo SINE Alu 1 298 -14 240 35 0 0 chr11 41576538 41576567 -107206905 + (A)n Simple_repeat Simple_repeat 1 29 0 1979 101 4 0 chr11 41576636 41576904 -107206568 - AluSg SINE Alu -11 299 31 596 326 54 8 chr11 41577169 41577408 -107206064 + MIR SINE MIR 5 254 -8 1888 216 22 7 chr11 41578525 41578984 -107204488 - L1 LINE L1 -1298 4848 4383 5100 148 40 16 chr11 41578989 41580124 -107203348 + L1PA16 LINE L1 5008 6166 0 334 114 57 0 chr11 41580208 41580296 -107203176 + (TA)n Simple_repeat Simple_repeat 2 94 0 35 63 0 0 chr11 41582357 41582420 -107201052 + AT_rich Low_complexity Low_complexity 1 63 0 1930 146 14 88 chr11 41583509 41583941 -107199531 + L1MA4 LINE L1 5896 6295 -5 30 77 0 0 chr11 41583988 41584053 -107199419 + AT_rich Low_complexity Low_complexity 1 65 0 1987 110 68 42 chr11 41584275 41584630 -107198842 - THE1B LTR MaLR 0 364 1 182 293 36 120 chr11 41584848 41585015 -107198457 - MER5A DNA MER1_type -1 188 36 1639 196 45 15 chr11 41585328 41585660 -107197812 + MLT1A1 LTR MaLR 24 365 0 1842 188 12 12 chr11 41586700 41587046 -107196426 + MER44D DNA MER2_type 184 584 -21 2665 99 8 0 chr11 41588555 41588927 -107194545 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr11 41589654 41589692 -107193780 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 41589969 41589999 -107193473 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 41590108 41590136 -107193336 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 41590165 41590193 -107193279 + AT_rich Low_complexity Low_complexity 1 28 0 881 120 20 33 chr11 41590449 41590599 -107192873 + AluSg/x SINE Alu 165 312 0 3268 196 64 24 chr11 41591504 41592298 -107191174 - LTR1B LTR ERV1 0 826 1 23 54 0 0 chr11 41593036 41593073 -107190399 + AT_rich Low_complexity Low_complexity 1 37 0 233 283 22 36 chr11 41593109 41593205 -107190267 - MIR SINE MIR -103 105 37 576 266 94 107 chr11 41593929 41594670 -107188802 - L2 LINE L2 0 3313 2593 250 49 82 0 chr11 41595300 41595361 -107188111 + (TA)n Simple_repeat Simple_repeat 2 67 0 3043 222 22 32 chr11 41595361 41596144 -107187328 + L1PA15 LINE L1 3863 4637 -1509 5405 137 20 2 chr11 41596264 41597592 -107185880 + L1PA15 LINE L1 4821 6163 -2 2111 82 13 26 chr11 41597886 41598189 -107185283 + AluSx SINE Alu 1 299 -13 227 265 24 12 chr11 41598337 41598420 -107185052 + (TA)n Simple_repeat Simple_repeat 2 85 0 1758 135 12 0 chr11 41598585 41598844 -107184628 + AluSx SINE Alu 39 300 -12 186 329 49 0 chr11 41598930 41599012 -107184460 + L2 LINE L2 3220 3305 -8 21 0 0 0 chr11 41600176 41600197 -107183275 + AT_rich Low_complexity Low_complexity 1 21 0 317 262 36 0 chr11 41600332 41600416 -107183056 + CT-rich Low_complexity Low_complexity 1 87 0 519 258 0 0 chr11 41600479 41600599 -107182873 - FLAM_A SINE Alu -13 120 1 201 139 0 0 chr11 41600977 41601020 -107182452 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6408 83 22 2 chr11 41601145 41602318 -107181154 + L1PA8 LINE L1 4974 6164 -8 778 289 28 14 chr11 41602945 41603156 -107180316 + MER58A DNA MER1_type 2 215 -9 802 185 14 7 chr11 41603293 41603439 -107180033 + FRAM SINE Alu 17 163 -13 425 244 0 0 chr11 41603449 41603531 -107179941 - MLT1F LTR MaLR -103 439 358 409 333 27 7 chr11 41603559 41603709 -107179763 - MLT1F LTR MaLR -389 153 1 722 283 9 35 chr11 41603882 41604112 -107179360 + MER58A DNA MER1_type 1 224 0 387 0 0 0 chr11 41604262 41604305 -107179167 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 335 137 5 chr11 41605392 41605589 -107177883 - MIR SINE MIR -10 252 30 23 33 0 0 chr11 41606648 41606678 -107176794 + AT_rich Low_complexity Low_complexity 1 30 0 2530 192 29 50 chr11 41606720 41607335 -107176137 - MER7C DNA MER2_type 0 602 1 1659 178 64 3 chr11 41607677 41607991 -107175481 + MER1B DNA MER1_type 5 337 0 213 232 14 0 chr11 41608134 41608203 -107175269 + (TTTAA)n Simple_repeat Simple_repeat 3 72 0 226 266 106 62 chr11 41608523 41608636 -107174836 - L2 LINE L2 -31 3282 3165 2454 190 51 42 chr11 41609013 41609560 -107173912 - MLT2B3 LTR ERVL -2 552 1 23 0 0 0 chr11 41609821 41609844 -107173628 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 41609940 41609962 -107173510 + AT_rich Low_complexity Low_complexity 1 22 0 455 349 71 42 chr11 41610274 41610755 -107172717 + HAL1b LINE L1 76 570 -778 248 335 47 24 chr11 41610823 41611035 -107172437 + HAL1b LINE L1 680 896 -452 3964 126 43 52 chr11 41611120 41611912 -107171560 + LTR1 LTR ERV1 1 785 0 273 301 113 43 chr11 41612280 41612957 -107170515 + L1ME LINE L1 5041 5764 -406 290 26 26 0 chr11 41612979 41613018 -107170454 + (TA)n Simple_repeat Simple_repeat 1 40 0 1442 220 3 25 chr11 41613019 41613333 -107170139 - AluJo SINE Alu -5 307 1 776 319 106 24 chr11 41613589 41614163 -107169309 + L1MC4a LINE L1 5303 5923 -1885 404 267 61 6 chr11 41614289 41614469 -107169003 + L1M4 LINE L1 3317 3506 -2640 323 301 79 64 chr11 41615339 41615744 -107167728 + L1ME LINE L1 541 951 -5119 26 0 0 0 chr11 41616732 41616758 -107166714 + AT_rich Low_complexity Low_complexity 1 26 0 2120 151 16 19 chr11 41617968 41618333 -107165139 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 41618520 41618541 -107164931 + AT_rich Low_complexity Low_complexity 1 21 0 6632 73 3 0 chr11 41618541 41619691 -107163781 - L1PA6 LINE L1 0 6154 5017 1484 146 45 0 chr11 41619795 41620041 -107163431 + Tigger4(Zombi) DNA MER2_type 212 468 -2263 516 242 0 0 chr11 41620042 41620141 -107163331 + AluS SINE Alu 1 99 -214 12607 78 5 0 chr11 41620141 41621842 -107161630 - L1P LINE L1 -1232 4914 3205 210 37 0 0 chr11 41621842 41621869 -107161603 + (A)n Simple_repeat Simple_repeat 1 27 0 4018 156 5 38 chr11 41621978 41622749 -107160723 - L1P LINE L1 -2524 3622 2877 12952 153 25 34 chr11 41622963 41623925 -107159547 - Tigger1 DNA MER2_type 0 2418 1450 1646 122 93 11 chr11 41623925 41624204 -107159268 - AluSx SINE Alu -10 302 1 12952 153 25 34 chr11 41624204 41625678 -107157794 - Tigger1 DNA MER2_type -968 1450 2 354 171 0 0 chr11 41626247 41626317 -107157155 + (TG)n Simple_repeat Simple_repeat 1 70 0 2807 198 70 8 chr11 41626579 41627166 -107156306 - MER67B LTR ERV1 0 661 39 512 251 48 69 chr11 41627310 41627541 -107155931 + MLT1F LTR MaLR 317 542 0 288 310 146 0 chr11 41628626 41628784 -107154688 + MIR SINE MIR 58 238 -24 23 0 0 0 chr11 41629349 41629372 -107154100 + AT_rich Low_complexity Low_complexity 1 23 0 2043 152 75 26 chr11 41629515 41630023 -107153449 + MLT2A2 LTR ERVL 1 554 0 1701 158 40 62 chr11 41630568 41630941 -107152531 + MLT1A1 LTR MaLR 1 365 0 5055 186 30 46 chr11 41631075 41633200 -107150272 - L1PB4 LINE L1 -5 6151 4052 3229 172 101 17 chr11 41633539 41634246 -107149226 - LTR1B LTR ERV1 -3 782 1 3779 111 33 11 chr11 41634334 41635043 -107148429 + LTR17 LTR ERV1 1 773 -7 1306 224 32 0 chr11 41635074 41635169 -107148303 + AluSx SINE Alu 27 117 -195 459 0 0 0 chr11 41635169 41635220 -107148252 + (CA)n Simple_repeat Simple_repeat 2 52 0 1306 224 32 0 chr11 41635220 41635401 -107148071 + AluSx SINE Alu 117 312 0 2115 60 0 0 chr11 41635775 41636040 -107147432 - AluY SINE Alu -2 309 45 2015 204 34 9 chr11 41636267 41636708 -107146764 - LTR47A LTR ERVL 0 452 1 460 263 35 91 chr11 41637357 41637589 -107145883 + MIR SINE MIR 44 262 0 22 0 0 0 chr11 41638067 41638089 -107145383 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 41638168 41638189 -107145283 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 41638545 41638569 -107144903 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 41638630 41638654 -107144818 + AT_rich Low_complexity Low_complexity 1 24 0 2292 78 0 35 chr11 41638848 41639167 -107144305 + AluY SINE Alu 1 308 -3 308 180 0 0 chr11 41640340 41640401 -107143071 - L1MB1 LINE L1 0 6168 6108 249 224 0 0 chr11 41640400 41640458 -107143014 + L1M2 LINE L1 5827 5884 -428 * 260 348 51 22 chr11 41641423 41641561 -107141911 - MIR SINE MIR -71 191 50 5708 230 29 16 chr11 41641629 41643452 -107140020 - L1MB3 LINE L1 -7 6412 4549 3320 73 77 4 chr11 41643452 41643917 -107139555 - L1PA6 LINE L1 -4 6150 5652 5708 230 29 16 chr11 41643917 41644583 -107138889 - L1MB3 LINE L1 -1870 4549 3893 1392 260 17 3 chr11 41644587 41644933 -107138539 - MLT1A1 LTR MaLR 0 365 15 8996 220 68 40 chr11 41645034 41645879 -107137593 - L1MB3 LINE L1 -2569 3813 2994 1565 84 4 26 chr11 41645879 41646105 -107137367 + L1PA8 LINE L1 5949 6169 -3 8996 220 68 40 chr11 41646105 41648075 -107135397 - L1MB3 LINE L1 -3388 2994 862 1223 280 14 19 chr11 41648075 41648439 -107135033 + MLT1A1 LTR MaLR 4 365 0 8996 220 68 40 chr11 41648439 41649326 -107134146 - L1MB3 LINE L1 -5520 862 2 22 0 0 0 chr11 41650037 41650059 -107133413 + AT_rich Low_complexity Low_complexity 1 22 0 711 240 61 116 chr11 41650087 41650271 -107133201 + MLT2C1 LTR ERVL 1 157 -240 13870 44 13 0 chr11 41650271 41652758 -107130714 - L1PA4 LINE L1 -2 6153 3642 711 240 61 116 chr11 41652758 41652935 -107130537 + MLT2C1 LTR ERVL 157 342 -55 21 71 0 0 chr11 41653089 41653131 -107130341 + AT_rich Low_complexity Low_complexity 1 42 0 371 184 40 17 chr11 41653178 41653352 -107130120 + (TA)n Simple_repeat Simple_repeat 2 179 0 212 247 24 35 chr11 41653353 41653438 -107130034 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 309 250 9 19 chr11 41653631 41653739 -107129733 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 36 0 0 chr11 41653812 41653840 -107129632 + AT_rich Low_complexity Low_complexity 1 28 0 5361 212 43 15 chr11 41653989 41657911 -107125561 + L1MA9 LINE L1 1 3481 -2722 1982 244 10 0 chr11 41657916 41658425 -107125047 + L1MA9 LINE L1 4628 5141 -1062 2205 271 12 19 chr11 41658429 41659201 -107124271 + L1MB7 LINE L1 4540 5305 -841 1338 144 26 91 chr11 41659201 41659541 -107123931 + L1MA9 LINE L1 5994 6311 -1 * 1546 205 114 16 chr11 41659539 41660265 -107123207 + L1MB7 LINE L1 5319 6120 -64 7666 147 9 11 chr11 41660266 41661415 -107122057 + HSMAR2 DNA Mariner 2 1149 -153 2109 112 10 13 chr11 41661415 41661727 -107121745 - AluSp SINE Alu -2 311 1 7666 147 9 11 chr11 41661727 41661877 -107121595 + HSMAR2 DNA Mariner 1149 1298 -4 2270 77 3 10 chr11 41661903 41662200 -107121272 + AluSx SINE Alu 3 297 -15 2740 198 53 36 chr11 41662200 41662616 -107120856 + L1MA9 LINE L1 5167 5575 -794 2400 155 23 35 chr11 41662616 41663007 -107120465 + MSTA LTR MaLR 1 389 -39 2111 106 3 0 chr11 41663007 41663332 -107120140 - AluY SINE Alu 0 326 1 2400 155 23 35 chr11 41663332 41663372 -107120100 + MSTA LTR MaLR 389 428 0 2740 198 53 36 chr11 41663372 41663818 -107119654 + L1MA9 LINE L1 5575 6044 -325 4018 102 13 2 chr11 41663822 41664379 -107119093 - HERVL-A1 LTR ERVL -702 4952 4390 562 99 176 0 chr11 41664485 41664507 -107118965 - MLT2A1 LTR ERVL -18 426 409 365 86 17 0 chr11 41664507 41664565 -107118907 + (TA)n Simple_repeat Simple_repeat 2 60 0 562 99 176 0 chr11 41664565 41664633 -107118839 - MLT2A1 LTR ERVL -35 409 320 31654 97 8 0 chr11 41664635 41668902 -107114570 - HERVL-A1 LTR ERVL -1354 4300 1 2790 107 42 7 chr11 41668902 41669331 -107114141 - MLT2A1 LTR ERVL 0 444 1 22 94 0 0 chr11 41669457 41669521 -107113951 + AT_rich Low_complexity Low_complexity 1 64 0 1694 50 4 38 chr11 41670028 41670266 -107113206 - L1PA5 LINE L1 0 6154 5925 321 68 0 0 chr11 41670474 41670518 -107112954 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 41670831 41670853 -107112619 + AT_rich Low_complexity Low_complexity 1 22 0 230 20 41 41 chr11 41672415 41672464 -107111008 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2184 148 8 16 chr11 41673457 41673835 -107109637 - L1PA16 LINE L1 -9 6157 5783 477 43 64 43 chr11 41673846 41673987 -107109485 + (TA)n Simple_repeat Simple_repeat 2 145 0 250 153 0 17 chr11 41673992 41674051 -107109421 + LTR66 LTR ERVL 407 464 -146 384 129 0 4 chr11 41674051 41674113 -107109359 - L1PA16 LINE L1 -409 5752 5693 30 45 0 0 chr11 41675853 41675897 -107107575 + AT_rich Low_complexity Low_complexity 1 44 0 5229 153 6 3 chr11 41675899 41676769 -107106703 + L1PA16 LINE L1 5290 6161 -5 2174 89 0 0 chr11 41678793 41679074 -107104398 + AluSq SINE Alu 1 281 -32 381 356 80 5 chr11 41680411 41680599 -107102873 + MIR3 SINE MIR 6 207 -1 189 333 28 62 chr11 41680672 41680816 -107102656 + MIR SINE MIR 51 189 -73 416 335 24 0 chr11 41681595 41681759 -107101713 + MIR SINE MIR 91 258 -4 702 194 10 77 chr11 41681759 41681955 -107101517 + L1PB4 LINE L1 5969 6151 -5 2075 135 3 3 chr11 41682033 41682345 -107101127 - AluSx SINE Alu 0 312 1 210 354 0 68 chr11 41682555 41682716 -107100756 - L2 LINE L2 -233 3039 2890 215 178 22 0 chr11 41684808 41684853 -107098619 + (TA)n Simple_repeat Simple_repeat 2 47 0 345 230 22 65 chr11 41685538 41685653 -107097819 + MER5A DNA MER1_type 4 112 -77 388 275 64 35 chr11 41685894 41686002 -107097470 + MER5B DNA MER1_type 1 117 -61 693 36 0 0 chr11 41686002 41686086 -107097386 + (TA)n Simple_repeat Simple_repeat 2 85 0 388 275 64 35 chr11 41686086 41686148 -107097324 + MER5B DNA MER1_type 117 176 -2 2383 264 72 15 chr11 41686489 41687425 -107096047 - L1M4 LINE L1 -1947 4199 3211 501 222 0 0 chr11 41687429 41687537 -107095935 - L1MCa LINE L1 -4604 1822 1715 189 0 0 0 chr11 41688520 41688541 -107094931 + (CA)n Simple_repeat Simple_repeat 2 22 0 237 356 94 6 chr11 41688603 41688763 -107094709 - MIR SINE MIR -11 251 78 488 339 44 32 chr11 41688934 41689182 -107094290 + MIR SINE MIR 6 256 -6 319 305 57 0 chr11 41689225 41689330 -107094142 - MIR SINE MIR -80 182 72 591 265 22 16 chr11 41689388 41689573 -107093899 + MER5A DNA MER1_type 4 189 0 387 0 0 0 chr11 41689744 41689787 -107093685 + (TG)n Simple_repeat Simple_repeat 2 44 0 1789 158 13 3 chr11 41690934 41691237 -107092235 + AluJo SINE Alu 1 306 -6 3794 210 41 15 chr11 41691375 41692261 -107091211 - L1MB5 LINE L1 -9 6165 5257 249 261 31 15 chr11 41692307 41692372 -107091100 - MIR SINE MIR -82 126 61 189 0 0 0 chr11 41692530 41692551 -107090921 + (TC)n Simple_repeat Simple_repeat 2 22 0 209 270 54 14 chr11 41692643 41692717 -107090755 + MIR SINE MIR 156 232 -30 6394 166 37 13 chr11 41692837 41694106 -107089366 + HSMAR2 DNA Mariner 1 1300 -2 340 195 51 102 chr11 41694156 41694274 -107089198 + L2 LINE L2 3167 3278 -35 224 313 18 13 chr11 41694345 41694460 -107089012 - MIR SINE MIR -59 203 88 1767 135 4 0 chr11 41694970 41695230 -107088242 - AluSq SINE Alu -18 295 35 200 294 11 87 chr11 41695325 41695417 -107088055 + MIR SINE MIR 67 151 -57 377 325 110 26 chr11 41696258 41696384 -107087088 - L1ME LINE L1 -362 5808 5694 7011 61 0 4 chr11 41696384 41697367 -107086105 - L1PA7 LINE L1 0 6154 5174 377 325 110 26 chr11 41697367 41697548 -107085924 - L1ME LINE L1 -476 5694 5475 207 64 85 21 chr11 41698898 41698945 -107084527 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 257 135 19 0 chr11 41698956 41699008 -107084464 + CT-rich Low_complexity Low_complexity 2 54 0 23 33 0 0 chr11 41699908 41699938 -107083534 + AT_rich Low_complexity Low_complexity 1 30 0 248 273 0 11 chr11 41699983 41700071 -107083401 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 725 240 10 51 chr11 41701565 41701761 -107081711 + MLT1A1 LTR MaLR 6 193 -172 941 219 41 0 chr11 41701771 41701967 -107081505 + MLT1A1 LTR MaLR 162 365 0 22 56 0 0 chr11 41702028 41702064 -107081408 + AT_rich Low_complexity Low_complexity 1 36 0 234 105 0 0 chr11 41702217 41702255 -107081217 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 499 205 168 26 chr11 41702277 41702467 -107081005 + L1MD3 LINE L1 6702 6918 -1077 530 308 85 5 chr11 41702688 41702912 -107080560 + L1ME LINE L1 290 531 -5539 213 94 0 0 chr11 41702917 41702949 -107080523 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 196 143 36 0 chr11 41703001 41703057 -107080415 + (TA)n Simple_repeat Simple_repeat 1 58 0 281 346 0 7 chr11 41703283 41703436 -107080036 + L1M4 LINE L1 3425 3576 -2570 387 116 0 158 chr11 41703834 41703929 -107079543 + MADE1 DNA Mariner 1 80 0 228 35 0 0 chr11 41704925 41704954 -107078518 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 288 119 51 chr11 41705533 41705651 -107077821 - MIR SINE MIR -63 145 20 406 297 74 40 chr11 41706135 41706337 -107077135 + L2 LINE L2 3008 3216 -97 1757 208 75 2 chr11 41706432 41706831 -107076641 - MSTA LTR MaLR 0 428 1 4488 231 44 20 chr11 41706838 41707892 -107075580 - MSTA-int LTR MaLR -58 1593 515 1410 135 153 72 chr11 41707892 41708239 -107075233 - THE1C LTR MaLR 0 375 1 2664 173 42 0 chr11 41708239 41708736 -107074736 - MSTA-int LTR MaLR -1132 519 2 1777 182 103 5 chr11 41708737 41709127 -107074345 - MSTA LTR MaLR 0 428 1 408 118 0 0 chr11 41709385 41709453 -107074019 + (CA)n Simple_repeat Simple_repeat 1 68 0 26 64 0 0 chr11 41710329 41710376 -107073096 + AT_rich Low_complexity Low_complexity 1 47 0 3759 71 4 0 chr11 41710540 41711034 -107072438 - L1PA8 LINE L1 -2 6170 5675 21 71 0 0 chr11 41711101 41711143 -107072329 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr11 41712206 41712236 -107071236 + AT_rich Low_complexity Low_complexity 1 30 0 255 266 101 9 chr11 41715192 41715301 -107068171 + LTR67 LTR ERVL 437 555 -2 331 321 75 21 chr11 41716534 41716721 -107066751 + MER115 DNA AcHobo 45 241 -452 289 293 40 0 chr11 41716942 41717041 -107066431 + MER115 DNA AcHobo 590 692 -1 25 0 0 0 chr11 41717632 41717657 -107065815 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 41717835 41717863 -107065609 + AT_rich Low_complexity Low_complexity 1 28 0 322 322 29 29 chr11 41717948 41718122 -107065350 - L1ME LINE L1 -418 5703 5530 2145 83 37 7 chr11 41718124 41718424 -107065048 - AluSg1 SINE Alu 0 309 1 440 277 118 46 chr11 41719507 41719745 -107063727 - MIR SINE MIR -5 257 3 230 367 34 51 chr11 41719846 41720023 -107063449 - MIR3 SINE MIR -1 207 34 2820 33 0 0 chr11 41720490 41720820 -107062652 + L1PA4 LINE L1 5763 6092 -63 399 324 65 37 chr11 41721498 41721819 -107061653 + L1ME4a LINE L1 5637 5966 -155 214 299 287 6 chr11 41723329 41723486 -107059986 - MIR SINE MIR -56 206 6 353 331 28 14 chr11 41723568 41723713 -107059759 + L2 LINE L2 3167 3313 0 1683 222 14 3 chr11 41724209 41724570 -107058902 - MLT1A1 LTR MaLR 0 365 1 982 212 73 40 chr11 41725126 41725179 -107058293 + MLT1C LTR MaLR 36 86 -381 1896 156 0 10 chr11 41725179 41725506 -107057966 + AluSx SINE Alu 1 312 0 982 212 73 40 chr11 41725506 41725726 -107057746 + MLT1C LTR MaLR 86 318 -149 1554 217 35 16 chr11 41725779 41726187 -107057285 + MER61D LTR ERV1 14 501 0 550 208 0 74 chr11 41726200 41726229 -107057243 + MLT1C LTR MaLR 330 360 -107 5647 93 22 4 chr11 41726229 41726995 -107056477 - LTR17 LTR ERV1 0 780 1 550 208 0 74 chr11 41726995 41727114 -107056358 + MLT1C LTR MaLR 360 467 0 333 309 109 38 chr11 41727526 41727736 -107055736 - MIR SINE MIR -17 245 21 344 252 117 9 chr11 41728615 41728726 -107054746 + MIR SINE MIR 14 136 -126 237 65 0 0 chr11 41728991 41729022 -107054450 + (TTA)n Simple_repeat Simple_repeat 1 31 0 392 0 21 0 chr11 41730536 41730584 -107052888 + (CA)n Simple_repeat Simple_repeat 1 49 0 261 251 17 84 chr11 41731220 41731399 -107052073 - L1MC5 LINE L1 -186 7775 7609 22 0 0 0 chr11 41731438 41731460 -107052012 + AT_rich Low_complexity Low_complexity 1 22 0 1128 186 15 0 chr11 41732121 41732320 -107051152 - AluJo SINE Alu -56 256 55 4836 130 35 14 chr11 41732323 41733087 -107050385 + LTR17 LTR ERV1 1 780 0 4803 117 3 23 chr11 41733087 41733791 -107049681 + HERV17 LTR ERV1 2 691 -7935 7642 67 1 4 chr11 41734022 41734984 -107048488 + HERV17 LTR ERV1 1056 2014 -6612 * 10063 64 21 18 chr11 41734969 41736290 -107047182 + HERV17 LTR ERV1 2430 3754 -4872 4871 52 2 3 chr11 41736269 41736882 -107046590 + HERV17 LTR ERV1 5405 6016 -2610 * 2266 78 0 3 chr11 41736907 41737200 -107046272 + HERV17 LTR ERV1 8335 8626 0 4982 132 17 10 chr11 41737200 41737975 -107045497 + LTR17 LTR ERV1 1 780 0 1744 163 36 39 chr11 41738099 41738436 -107045036 - MER1B DNA MER1_type -1 336 1 339 226 2 0 chr11 41738677 41738774 -107044698 - L1MA8 LINE L1 -2 6289 6192 658 299 57 15 chr11 41738797 41739255 -107044217 - L1M4 LINE L1 -2938 3706 3230 2304 160 65 0 chr11 41739257 41739656 -107043816 - MSTB LTR MaLR -1 425 1 459 283 78 37 chr11 41739745 41740179 -107043293 - L1M4 LINE L1 -3630 3014 2605 312 324 7 29 chr11 41740322 41740461 -107043011 - L1M4 LINE L1 -4411 2414 2279 389 290 58 64 chr11 41740503 41740958 -107042514 - L1M4 LINE L1 -4755 2070 1473 1777 209 78 18 chr11 41741058 41741546 -107041926 - L1MD3 LINE L1 -82 7913 7397 237 257 54 0 chr11 41741555 41741629 -107041843 + MLT1G1 LTR MaLR 502 579 -16 26 0 0 0 chr11 41743126 41743152 -107040320 + AT_rich Low_complexity Low_complexity 1 26 0 14281 137 15 30 chr11 41745392 41747128 -107036344 - Tigger1 DNA MER2_type -61 2357 668 1929 129 0 28 chr11 41747128 41747414 -107036058 - AluSg SINE Alu -30 280 3 14281 137 15 30 chr11 41747414 41748072 -107035400 - Tigger1 DNA MER2_type -1750 668 1 203 349 0 0 chr11 41748090 41748156 -107035316 - L2 LINE L2 -589 2725 2660 1577 200 10 3 chr11 41748250 41748550 -107034922 + AluJo SINE Alu 11 312 0 1197 278 119 21 chr11 41748766 41749237 -107034235 + MLT1F LTR MaLR 24 540 -2 380 346 147 21 chr11 41749262 41749744 -107033728 - L2 LINE L2 -962 2352 1810 542 220 30 0 chr11 41750294 41750394 -107033078 + Tigger3(Golem) DNA MER2_type 14 116 -2913 5826 158 77 13 chr11 41750973 41752117 -107031355 - Tigger3b DNA MER2_type -1 1230 14 22 35 0 0 chr11 41752214 41752243 -107031229 + AT_rich Low_complexity Low_complexity 1 29 0 1182 257 126 13 chr11 41752336 41752733 -107030739 - MLT1E2 LTR MaLR -74 552 111 2518 59 3 0 chr11 41754858 41755163 -107028309 + AluY SINE Alu 1 306 -5 268 292 100 17 chr11 41755507 41755627 -107027845 - MIR SINE MIR -25 237 108 1073 331 106 2 chr11 41757334 41757835 -107025637 - MLT1H1 LTR MaLR 0 555 3 3038 93 12 5 chr11 41758003 41758413 -107025059 + MLT2A2 LTR ERVL 1 413 -40 21 36 0 0 chr11 41758429 41758457 -107025015 + AT_rich Low_complexity Low_complexity 1 28 0 244 118 118 0 chr11 41758470 41758521 -107024951 + MLT2A2 LTR ERVL 397 453 0 31568 82 5 23 chr11 41758522 41762791 -107020681 + HERVL-A2 LTR ERVL 2 4195 -1459 1986 96 4 4 chr11 41764111 41764372 -107019100 - AluSg SINE Alu -37 273 13 2436 40 7 3 chr11 41765003 41765299 -107018173 - AluY SINE Alu -14 297 1 14533 191 24 35 chr11 41765837 41768516 -107014956 - L1MA3 LINE L1 -3 7721 5014 1172 61 17 17 chr11 41768516 41768696 -107014776 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 14533 191 24 35 chr11 41768696 41772063 -107011409 - L1MA3 LINE L1 -2710 5014 1795 2421 72 0 10 chr11 41772063 41772368 -107011104 - AluY SINE Alu -9 302 1 14533 191 24 35 chr11 41772368 41774130 -107009342 - L1MA3 LINE L1 -5929 1795 15 202 321 31 44 chr11 41775960 41776119 -107007353 - MIR SINE MIR 0 262 106 553 286 153 60 chr11 41777033 41777484 -107005988 + MLT1G1 LTR MaLR 90 582 -13 26 50 0 0 chr11 41778763 41778803 -107004669 + AT_rich Low_complexity Low_complexity 1 40 0 341 222 11 22 chr11 41779391 41779481 -107003991 + MER96B DNA MER1_type? 142 230 -187 2210 110 0 10 chr11 41780345 41780646 -107002826 + AluSc SINE Alu 1 298 -11 377 151 0 14 chr11 41780646 41780712 -107002760 + GA-rich Low_complexity Low_complexity 6 72 0 312 27 0 0 chr11 41780710 41780747 -107002725 + (TAA)n Simple_repeat Simple_repeat 2 38 0 * 531 205 20 73 chr11 41780747 41780898 -107002574 - MLT1C LTR MaLR -319 148 6 204 306 42 49 chr11 41782617 41782761 -107000711 - L2 LINE L2 -214 3058 2916 238 191 21 0 chr11 41784093 41784145 -106999327 + CT-rich Low_complexity Low_complexity 1 53 0 222 118 0 0 chr11 41784246 41784280 -106999192 + (TA)n Simple_repeat Simple_repeat 2 35 0 286 269 25 67 chr11 41784680 41784799 -106998673 - MIR SINE MIR -113 149 36 285 317 21 41 chr11 41785100 41785245 -106998227 + MIR SINE MIR 65 206 -56 197 365 58 29 chr11 41786337 41786441 -106997031 - MIR SINE MIR -60 148 42 301 291 34 122 chr11 41787576 41787813 -106995659 - MIR SINE MIR -4 258 43 241 304 13 13 chr11 41789470 41789549 -106993923 - MIR SINE MIR -5 257 179 499 313 55 0 chr11 41789839 41790002 -106993470 - MIR SINE MIR -70 192 21 21 0 0 0 chr11 41790494 41790515 -106992957 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr11 41791197 41791250 -106992222 + AT_rich Low_complexity Low_complexity 1 53 0 1313 290 57 28 chr11 41791570 41792146 -106991326 - MLT1E LTR MaLR 0 593 1 777 209 0 19 chr11 41792271 41792429 -106991043 + FAM SINE Alu 9 163 -22 220 188 29 0 chr11 41792435 41792504 -106990968 + (TA)n Simple_repeat Simple_repeat 1 71 0 288 274 97 59 chr11 41793026 41793212 -106990260 + MIR SINE MIR 26 218 -44 332 360 25 50 chr11 41795290 41795529 -106987943 + MIR SINE MIR 14 246 -16 260 366 60 14 chr11 41795623 41795839 -106987633 - L3 LINE CR1 -271 1306 1081 260 252 0 19 chr11 41796127 41796230 -106987242 + L1MC4 LINE L1 6603 6703 -1339 244 107 54 0 chr11 41796185 41796241 -106987231 - L1MCa LINE L1 -4362 2064 2006 * 249 369 50 50 chr11 41796289 41796511 -106986961 - L3 LINE CR1 -752 825 604 1928 121 29 0 chr11 41796594 41796897 -106986575 - AluSx SINE Alu 0 313 3 242 351 149 5 chr11 41797762 41797950 -106985522 - MIR SINE MIR 0 262 48 3020 210 37 46 chr11 41798080 41798912 -106984560 - LTR1B LTR ERV1 -1 825 1 381 256 23 53 chr11 41799381 41799514 -106983958 - MLT1I LTR MaLR -6 403 275 416 231 8 43 chr11 41799583 41799700 -106983772 + MLT1I LTR MaLR 283 395 -14 232 313 89 18 chr11 41799760 41799872 -106983600 + MER5B DNA MER1_type 3 122 -56 307 335 180 27 chr11 41801123 41801496 -106981976 - L2 LINE L2 -67 3246 2817 * 458 331 97 32 chr11 41801467 41801745 -106981727 - L2 LINE L2 -1954 1360 1065 22 70 0 0 chr11 41801947 41801990 -106981482 + AT_rich Low_complexity Low_complexity 1 43 0 265 286 27 0 chr11 41802327 41802439 -106981033 + (TA)n Simple_repeat Simple_repeat 2 116 0 182 191 0 44 chr11 41802446 41802514 -106980958 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 1815 187 12 52 chr11 41802561 41802893 -106980579 - MER31A LTR ERV1 -79 406 93 3408 147 7 89 chr11 41802893 41803646 -106979826 + LTR8 LTR ERV1 1 691 0 1815 187 12 52 chr11 41803646 41803736 -106979736 - MER31A LTR ERV1 -392 93 1 203 243 200 0 chr11 41803915 41803985 -106979487 + MIR SINE MIR 58 141 -121 313 229 26 20 chr11 41804396 41804549 -106978923 + CT-rich Low_complexity Low_complexity 3 156 0 205 182 0 0 chr11 41804738 41804782 -106978690 + T-rich Low_complexity Low_complexity 4 47 0 23 0 0 0 chr11 41805036 41805059 -106978413 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr11 41805295 41805350 -106978122 + AT_rich Low_complexity Low_complexity 1 55 0 2306 116 50 14 chr11 41805960 41806322 -106977150 + THE1C LTR MaLR 1 375 0 1371 167 147 0 chr11 41807569 41807827 -106975645 + AluSx SINE Alu 3 298 -4 1013 212 121 54 chr11 41807853 41808225 -106975247 - MER39 LTR ERV1 0 707 311 271 242 71 20 chr11 41810065 41810164 -106973308 + MLT1I LTR MaLR 296 399 -10 336 275 126 30 chr11 41811958 41812125 -106971347 + MER5A DNA MER1_type 7 189 0 183 315 74 0 chr11 41812125 41812179 -106971293 - L2 LINE L2 -19 3294 3237 342 298 196 0 chr11 41813613 41813781 -106969691 + MIR SINE MIR 51 251 -11 2151 73 21 3 chr11 41813790 41814076 -106969396 + AluY SINE Alu 1 291 -20 21 0 0 0 chr11 41814078 41814099 -106969373 + AT_rich Low_complexity Low_complexity 1 21 0 232 279 37 88 chr11 41814631 41814767 -106968705 + MIR SINE MIR 78 206 -56 196 313 12 24 chr11 41815323 41815406 -106968066 + MIR SINE MIR 181 262 0 377 238 96 136 chr11 41815739 41816366 -106967106 - L1MC5 LINE L1 -241 7720 7119 33 25 0 0 chr11 41816439 41816479 -106966993 + AT_rich Low_complexity Low_complexity 1 40 0 293 336 9 9 chr11 41817423 41817530 -106965942 - MIR SINE MIR -103 159 53 21 0 0 0 chr11 41818856 41818877 -106964595 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 41819360 41819392 -106964080 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr11 41819711 41819738 -106963734 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 228 295 42 72 chr11 41820073 41820239 -106963233 - MIR SINE MIR -56 206 46 22 56 0 0 chr11 41820556 41820592 -106962880 + AT_rich Low_complexity Low_complexity 1 36 0 306 290 19 19 chr11 41820598 41820705 -106962767 + MIR SINE MIR 110 216 -46 231 36 0 0 chr11 41820847 41820875 -106962597 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1988 177 30 39 chr11 41820980 41821533 -106961939 + MLT2A2 LTR ERVL 1 554 0 23 108 0 0 chr11 41822103 41822196 -106961276 + AT_rich Low_complexity Low_complexity 1 93 0 215 30 0 30 chr11 41822537 41822570 -106960902 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 26 30 0 0 chr11 41822892 41822925 -106960547 + AT_rich Low_complexity Low_complexity 1 33 0 2088 124 0 3 chr11 41823104 41823394 -106960078 + AluSx SINE Alu 1 289 -23 4872 218 74 3 chr11 41823446 41824427 -106959045 + L1PA13 LINE L1 1 1051 -5736 3285 132 26 0 chr11 41824436 41824974 -106958498 + L1PA13 LINE L1 5601 6152 -11 323 275 38 71 chr11 41825023 41825234 -106958238 - L2 LINE L2 0 3313 3110 418 324 80 51 chr11 41825303 41825676 -106957796 - L2 LINE L2 -769 2545 2162 2683 96 0 0 chr11 41826163 41826518 -106956954 - THE1A LTR MaLR 0 355 1 11269 97 5 20 chr11 41826518 41827624 -106955848 - THE1A-int LTR MaLR 0 1580 504 2053 107 13 41 chr11 41827624 41827941 -106955531 - AluSg SINE Alu 0 310 3 11269 97 5 20 chr11 41827941 41828438 -106955034 - THE1A-int LTR MaLR -1076 504 1 2494 119 6 0 chr11 41828438 41828791 -106954681 - THE1A LTR MaLR 0 355 1 306 180 0 0 chr11 41828927 41828988 -106954484 + (CA)n Simple_repeat Simple_repeat 2 62 0 241 313 137 8 chr11 41829246 41829377 -106954095 - L2 LINE L2 -4 3268 3121 22 80 0 0 chr11 41829471 41829521 -106953951 + AT_rich Low_complexity Low_complexity 1 50 0 275 146 18 0 chr11 41830221 41830276 -106953196 + CT-rich Low_complexity Low_complexity 4 59 0 432 37 0 0 chr11 41830320 41830374 -106953098 + (CA)n Simple_repeat Simple_repeat 2 55 0 458 234 0 28 chr11 41832170 41832277 -106951195 + MER5A DNA MER1_type 3 106 -83 215 247 176 35 chr11 41832954 41833039 -106950433 + L2 LINE L2 3141 3237 -76 183 306 65 16 chr11 41833122 41833184 -106950288 + MIR SINE MIR 82 146 -62 347 255 20 10 chr11 41833194 41833292 -106950180 + MER89 LTR ERV1 1 99 -460 1557 196 30 24 chr11 41833334 41833540 -106949932 + MER89 LTR ERV1 226 436 -123 1746 202 33 25 chr11 41833540 41833902 -106949570 + MLT1A1 LTR MaLR 1 365 0 1557 196 30 24 chr11 41833902 41834027 -106949445 + MER89 LTR ERV1 436 559 0 1187 291 17 10 chr11 41834358 41834763 -106948709 + MER97c DNA MER1_type? 250 657 -433 554 110 65 160 chr11 41834772 41834972 -106948500 - MER53 DNA DNA 0 189 9 229 161 54 0 chr11 41834986 41835042 -106948430 + MER97a DNA MER1_type? 664 722 -172 4647 207 68 14 chr11 41835257 41836691 -106946781 + L1MC1 LINE L1 4820 6333 0 22 0 0 0 chr11 41837216 41837238 -106946234 + AT_rich Low_complexity Low_complexity 1 22 0 290 331 98 12 chr11 41838007 41838170 -106945302 - MIR SINE MIR -34 228 52 1075 234 20 31 chr11 41838172 41838523 -106944949 - LTR37A LTR ERV1 -2 424 78 268 280 20 0 chr11 41840118 41840218 -106943254 - L1MEc LINE L1 -4753 1643 1542 751 115 62 31 chr11 41840669 41840799 -106942673 - MER61E LTR ERV1 0 569 436 439 151 209 0 chr11 41840831 41840917 -106942555 - LTR25 LTR ERV1 -275 519 416 358 129 157 0 chr11 41841145 41841215 -106942257 - MER61E LTR ERV1 -484 85 5 328 304 89 18 chr11 41841264 41841432 -106942040 - L1ME LINE L1 -330 5791 5612 327 305 84 25 chr11 41841499 41841702 -106941770 - L1ME LINE L1 -2320 5488 5274 36 40 0 0 chr11 41841798 41841848 -106941624 + AT_rich Low_complexity Low_complexity 1 50 0 29 78 0 0 chr11 41842253 41842317 -106941155 + AT_rich Low_complexity Low_complexity 1 64 0 912 109 7 14 chr11 41842576 41842723 -106940749 + L1PA8 LINE L1 6026 6171 -1 607 163 65 20 chr11 41843170 41843323 -106940149 + MER53 DNA DNA 4 163 -26 11196 101 5 4 chr11 41843429 41845860 -106937612 - L1PA8 LINE L1 0 6172 3735 21 0 0 0 chr11 41847037 41847058 -106936414 + AT_rich Low_complexity Low_complexity 1 21 0 624 259 59 38 chr11 41847086 41847325 -106936147 - L1ME3A LINE L1 0 6170 5927 1588 221 2 86 chr11 41847338 41847794 -106935678 - MER34 LTR ERV1 0 542 125 508 317 123 4 chr11 41847886 41848113 -106935359 - L1ME3A LINE L1 -406 5764 5511 343 307 83 31 chr11 41848143 41848341 -106935131 - MIR SINE MIR -18 244 39 288 250 42 69 chr11 41848433 41848577 -106934895 - MIR SINE MIR -24 238 99 434 276 43 0 chr11 41848628 41848744 -106934728 + L2 LINE L2 3193 3313 0 203 409 35 0 chr11 41849023 41849138 -106934334 - L2 LINE L2 0 3272 3154 205 300 56 0 chr11 41849140 41849230 -106934242 + MIR SINE MIR 97 191 -71 189 0 0 0 chr11 41849490 41849511 -106933961 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 835 291 112 21 chr11 41849588 41849973 -106933499 - MER57B LTR ERV1 -5 429 10 195 306 71 31 chr11 41850517 41850615 -106932857 - L2 LINE L2 0 3272 3171 180 77 0 0 chr11 41851065 41851091 -106932381 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 39 95 0 0 chr11 41852552 41852668 -106930804 + AT_rich Low_complexity Low_complexity 1 116 0 672 209 0 31 chr11 41855287 41855416 -106928056 + FLAM_C SINE Alu 3 127 -16 472 293 125 21 chr11 41855677 41856101 -106927371 + L1M4 LINE L1 3798 4265 -1881 481 346 118 40 chr11 41856219 41857001 -106926471 + L1M4 LINE L1 4399 5241 -905 850 203 50 15 chr11 41857255 41857457 -106926015 - MLT1C LTR MaLR -2 465 257 29850 118 11 25 chr11 41857627 41864044 -106919428 - L1PA7 LINE L1 -66 6403 2 2119 171 3 3 chr11 41864098 41864460 -106919012 - THE1B LTR MaLR -2 362 1 9111 139 35 26 chr11 41864460 41866019 -106917453 - THE1C-int LTR MaLR 0 1580 5 2585 128 3 0 chr11 41866024 41866398 -106917074 - THE1C LTR MaLR 0 375 1 225 94 0 0 chr11 41866448 41866480 -106916992 + (A)n Simple_repeat Simple_repeat 1 32 0 1781 183 27 18 chr11 41867353 41867686 -106915786 - MER1B DNA MER1_type -1 336 1 827 209 45 25 chr11 41868099 41868300 -106915172 - MER3 DNA MER1_type -4 205 1 2136 106 7 0 chr11 41868621 41868914 -106914558 + AluSx SINE Alu 1 295 -17 483 185 7 74 chr11 41870217 41870352 -106913120 + MLT1E2 LTR MaLR 64 189 -437 3206 19 0 0 chr11 41870352 41870719 -106912753 + L1PA3 LINE L1 5644 6010 -145 12749 126 27 21 chr11 41870719 41872422 -106911050 - LOR1-int LTR ERV1 -3284 4836 3115 1847 169 6 28 chr11 41872422 41872741 -106910731 - AluJo SINE Alu 0 312 1 12749 126 27 21 chr11 41872741 41873271 -106910201 - LOR1-int LTR ERV1 -5005 3115 2590 2118 175 7 19 chr11 41873284 41873968 -106909504 - MER52A LTR ERV1 -374 1381 1 8816 125 22 30 chr11 41873968 41875607 -106907865 - LOR1a-int LTR ERV1 -6485 1635 1 2889 168 8 2 chr11 41875607 41876100 -106907372 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41877941 41877970 -106905502 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41878186 41878288 -106905184 + AT_rich Low_complexity Low_complexity 1 102 0 190 299 93 10 chr11 41878571 41878668 -106904804 - L2 LINE L2 -1 3312 3208 8963 93 6 4 chr11 41878768 41880021 -106903451 - L1P LINE L1 -977 5169 3912 2583 14 0 0 chr11 41880021 41880317 -106903155 - L1PA2 LINE L1 0 6155 5860 8963 93 6 4 chr11 41880317 41880342 -106903130 - L1P LINE L1 -2234 3912 3889 8001 109 7 6 chr11 41880443 41881668 -106901804 - L1P LINE L1 -1445 4701 3475 268 229 0 0 chr11 41881668 41881729 -106901743 + MLT1E3 LTR MaLR 562 622 -2 682 289 47 8 chr11 41881773 41882008 -106901464 - MIR SINE MIR -5 257 14 220 207 11 35 chr11 41882399 41882486 -106900986 + T-rich Low_complexity Low_complexity 5 89 0 228 224 53 13 chr11 41883510 41883586 -106899886 + L1M4b LINE L1 1462 1540 -5319 321 308 110 17 chr11 41883802 41884094 -106899378 + L1M4b LINE L1 1825 2143 -4816 289 310 47 53 chr11 41884210 41884571 -106898901 + L1M4b LINE L1 2673 3031 -4107 345 47 0 0 chr11 41884572 41884615 -106898857 + (CA)n Simple_repeat Simple_repeat 1 43 0 326 249 249 0 chr11 41884695 41884872 -106898600 + L1M4b LINE L1 3130 3350 -3607 869 208 72 65 chr11 41884910 41885203 -106898269 - MLT1D LTR MaLR 0 505 211 335 154 0 46 chr11 41887196 41887261 -106896211 + MER5B DNA MER1_type 9 70 -108 651 137 0 10 chr11 41887802 41887904 -106895568 - AluS SINE Alu -212 101 1 1905 150 12 18 chr11 41887909 41888248 -106895224 - L1MC1 LINE L1 0 6333 5997 3035 98 22 2 chr11 41889091 41889538 -106893934 + L1PA14 LINE L1 5706 6161 0 199 314 14 14 chr11 41889631 41889701 -106893771 + L2 LINE L2 3203 3272 0 416 331 77 17 chr11 41889748 41890035 -106893437 + L1ME4a LINE L1 5564 5867 -254 2080 122 0 3 chr11 41891728 41892022 -106891450 + AluSx SINE Alu 1 293 -19 1127 139 6 0 chr11 41892772 41892938 -106890534 - AluSx SINE Alu -25 285 119 955 138 0 0 chr11 41893553 41893683 -106889789 - AluSx SINE Alu -182 130 1 488 211 11 0 chr11 41893699 41893789 -106889683 - MLT1D LTR MaLR -414 91 1 393 227 167 51 chr11 41893816 41894032 -106889440 + L1M4b LINE L1 3458 3698 -3259 933 254 29 26 chr11 41894039 41894389 -106889083 - L1M4 LINE L1 -754 5392 5042 1509 170 64 36 chr11 41894404 41894660 -106888812 + MER44D DNA MER2_type 1 249 -2242 1953 156 19 26 chr11 41894660 41895038 -106888434 - THE1C LTR MaLR 0 375 1 1509 170 64 36 chr11 41895038 41895111 -106888361 + MER44D DNA MER2_type 249 609 0 1274 282 56 31 chr11 41895116 41895991 -106887481 - L1MDb LINE L1 -2140 4504 3608 668 285 64 31 chr11 41896024 41896413 -106887059 - L1MDb LINE L1 -3257 3387 2986 * 1001 273 104 52 chr11 41896410 41897481 -106885991 - L1MDb LINE L1 -3973 2671 1441 25 65 0 0 chr11 41897536 41897582 -106885890 + AT_rich Low_complexity Low_complexity 1 46 0 310 336 43 43 chr11 41897589 41897800 -106885672 - L1MDb LINE L1 -5421 1226 1016 344 40 20 0 chr11 41898204 41898254 -106885218 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 301 16 47 chr11 41898305 41898498 -106884974 - L1MDb LINE L1 -6318 326 140 2990 156 6 6 chr11 41898547 41899042 -106884430 - LOR1a LTR ERV1 -2 495 1 675 81 0 0 chr11 41899044 41899131 -106884341 - LOR1a-int LTR ERV1 -3 8117 8031 * 20208 127 35 18 chr11 41899122 41902015 -106881457 - LOR1a-int LTR ERV1 -2048 6072 3109 1847 169 6 28 chr11 41902015 41902334 -106881138 - AluJo SINE Alu 0 312 1 20208 127 35 18 chr11 41902334 41902864 -106880608 - LOR1a-int LTR ERV1 -5011 3109 2590 2118 175 7 19 chr11 41902877 41903561 -106879911 - MER52A LTR ERV1 -374 1381 1 9479 143 21 23 chr11 41903561 41905200 -106878272 - LOR1a-int LTR ERV1 -6485 1635 1 2889 168 8 2 chr11 41905200 41905693 -106877779 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41907534 41907563 -106875909 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41907779 41907881 -106875591 + AT_rich Low_complexity Low_complexity 1 102 0 190 299 93 10 chr11 41908164 41908261 -106875211 - L2 LINE L2 -1 3312 3208 9660 88 6 3 chr11 41908361 41909614 -106873858 - L1P LINE L1 -977 5169 3910 2583 14 0 0 chr11 41909614 41909910 -106873562 - L1PA2 LINE L1 0 6155 5860 9660 88 6 3 chr11 41909910 41910012 -106873460 - L1P LINE L1 -2236 3910 3810 229 171 0 0 chr11 41910340 41910381 -106873091 + 5S rRNA rRNA 2 42 -79 25 65 0 0 chr11 41910511 41910557 -106872915 + AT_rich Low_complexity Low_complexity 1 46 0 1938 146 27 3 chr11 41910784 41911079 -106872393 + AluSx SINE Alu 1 302 -10 336 256 44 11 chr11 41912831 41912921 -106870551 + MER5C DNA MER1_type 2 94 -230 426 203 40 0 chr11 41913099 41913247 -106870225 + GA-rich Low_complexity Low_complexity 1 154 0 218 341 32 8 chr11 41913720 41913843 -106869629 + L2 LINE L2 2453 2578 -736 13583 202 21 60 chr11 41914772 41917679 -106865793 + L1PA13 LINE L1 1 3019 -3795 1753 179 13 32 chr11 41917679 41918054 -106865418 - L1MB8 LINE L1 0 6178 5811 3102 63 2 0 chr11 41918054 41918440 -106865032 - L1PA7 LINE L1 -1 6153 5758 13583 202 21 60 chr11 41918440 41920699 -106862773 + L1PA13 LINE L1 3018 5363 -1451 2036 127 75 26 chr11 41920699 41921046 -106862426 - THE1B LTR MaLR 0 364 1 11333 105 2 0 chr11 41921046 41922623 -106860849 - THE1B-int LTR MaLR 0 1580 1 1884 156 79 15 chr11 41922625 41922965 -106860507 - THE1B LTR MaLR -2 362 1 13583 202 21 60 chr11 41922965 41924915 -106858557 + L1PA13 LINE L1 5363 6796 -18 1309 175 77 153 chr11 41925340 41925889 -106857583 + MER67D LTR ERV1 3 509 -5 1632 213 40 60 chr11 41926885 41926951 -106856521 - L1MB8 LINE L1 -869 5277 5211 459 0 0 0 chr11 41926951 41927002 -106856470 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2110 108 4 0 chr11 41927004 41927281 -106856191 - AluSc SINE Alu -29 280 3 1632 213 40 60 chr11 41927281 41927506 -106855966 - L1MB8 LINE L1 -936 5210 4996 1975 125 0 0 chr11 41927506 41927786 -106855686 - AluSg SINE Alu -30 280 1 1632 213 40 60 chr11 41927786 41928020 -106855452 - L1MB8 LINE L1 -1150 4996 4759 1363 188 6 72 chr11 41928036 41928381 -106855091 + L1MA10 LINE L1 6008 6329 -5 238 299 50 75 chr11 41928546 41928600 -106854872 + L1MC/D LINE L1 5533 5587 -2221 2459 53 7 3 chr11 41928600 41928900 -106854572 - AluY SINE Alu -10 301 1 238 299 50 75 chr11 41928900 41929086 -106854386 + L1MC/D LINE L1 5587 5767 -2041 487 351 120 20 chr11 41929372 41929921 -106853551 + L1M4 LINE L1 3352 3955 -2191 649 229 103 105 chr11 41929983 41930441 -106853031 - LTR37B LTR ERV1 -5 463 7 202 404 18 0 chr11 41930694 41930808 -106852664 + L2 LINE L2 3193 3308 -5 3296 130 12 17 chr11 41931455 41931677 -106851795 - L1M1 LINE L1 -507 5798 5576 7288 43 16 1 chr11 41931677 41932559 -106850913 + MER11D LTR ERVK 3 897 0 3296 130 12 17 chr11 41932559 41933085 -106850387 - L1M1 LINE L1 -729 5576 5054 1989 188 36 21 chr11 41933118 41933592 -106849880 + L1MA3 LINE L1 5824 6304 -1 523 80 0 0 chr11 41933741 41933816 -106849656 - Alu SINE Alu -1 311 237 426 182 27 9 chr11 41933991 41934101 -106849371 + CT-rich Low_complexity Low_complexity 4 115 0 1838 113 28 60 chr11 41934114 41934432 -106849040 - AluSq SINE Alu 0 313 6 763 250 52 24 chr11 41934856 41935068 -106848404 - MER20 DNA MER1_type -1 218 1 245 185 0 0 chr11 41935786 41935840 -106847632 + (TA)n Simple_repeat Simple_repeat 2 55 0 261 224 47 12 chr11 41936202 41936287 -106847185 - LTR37A LTR ERV1 -12 414 327 802 181 78 12 chr11 41936288 41936454 -106847018 + AluJb SINE Alu 136 312 0 245 262 139 32 chr11 41936502 41936560 -106846912 - LTR37A LTR ERV1 -114 312 262 3193 36 8 3 chr11 41936560 41936951 -106846521 + L1PA4 LINE L1 5763 6155 0 245 262 139 32 chr11 41936951 41937144 -106846328 - LTR37A LTR ERV1 -164 262 34 1618 86 14 9 chr11 41937289 41937509 -106845963 + AluSq SINE Alu 1 221 -92 209 139 23 0 chr11 41937509 41937552 -106845920 + A-rich Low_complexity Low_complexity 3 46 0 24 53 0 0 chr11 41937830 41937868 -106845604 + AT_rich Low_complexity Low_complexity 1 38 0 218 119 0 24 chr11 41938495 41938537 -106844935 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 570 247 73 17 chr11 41939496 41939674 -106843798 - MER69 DNA AcHobo -1002 224 37 21 0 0 0 chr11 41939862 41939883 -106843589 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 41940701 41940722 -106842750 + AT_rich Low_complexity Low_complexity 1 21 0 1095 121 81 0 chr11 41941156 41941329 -106842143 - AluSp SINE Alu -7 306 120 25 0 0 0 chr11 41941497 41941522 -106841950 + AT_rich Low_complexity Low_complexity 1 25 0 913 86 0 0 chr11 41941593 41941710 -106841762 - AluSp SINE Alu -196 117 1 2273 137 31 14 chr11 41943404 41943761 -106839711 + THE1B LTR MaLR 2 364 0 1361 220 3 25 chr11 41945555 41945841 -106837631 + AluJb SINE Alu 1 280 -32 197 306 27 63 chr11 41946365 41946476 -106836996 + MIR SINE MIR 74 180 -82 335 237 29 29 chr11 41947443 41947616 -106835856 + (TATATG)n Simple_repeat Simple_repeat 1 173 0 24 32 0 0 chr11 41947683 41947714 -106835758 + AT_rich Low_complexity Low_complexity 1 31 0 206 245 0 0 chr11 41947873 41947922 -106835550 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 262 214 153 20 chr11 41948401 41948499 -106834973 - L1ME4a LINE L1 -32 6089 5979 243 0 0 0 chr11 41949561 41949588 -106833884 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 325 160 19 chr11 41950353 41950565 -106832907 - MLT1J LTR MaLR -44 467 226 180 111 0 0 chr11 41950698 41950725 -106832747 + (TGG)n Simple_repeat Simple_repeat 3 29 0 2275 95 3 29 chr11 41950752 41951067 -106832405 + AluSg SINE Alu 1 307 -3 274 271 34 25 chr11 41951817 41951935 -106831537 - MER103 DNA DNA -43 123 5 9481 158 24 39 chr11 41953563 41955406 -106828066 + Tigger1 DNA MER2_type 603 2418 0 2174 107 0 0 chr11 41955650 41955931 -106827541 - AluSq SINE Alu -32 281 1 215 59 0 29 chr11 41955983 41956017 -106827455 + (TATG)n Simple_repeat Simple_repeat 4 36 0 752 194 29 17 chr11 41956278 41956453 -106827019 + MER58A DNA MER1_type 42 218 -6 1145 314 63 57 chr11 41956696 41957327 -106826145 - MER115 DNA AcHobo -7 686 52 566 310 11 11 chr11 41957376 41957560 -106825912 + MER20 DNA MER1_type 32 215 -4 290 278 270 0 chr11 41957562 41957677 -106825795 + MER5A DNA MER1_type 44 189 0 18154 61 0 7 chr11 41957896 41960202 -106823270 + L1P LINE L1 2 2290 -3856 7420 33 2 0 chr11 41960203 41961388 -106822084 + L1PA3 LINE L1 4969 6162 0 25 0 0 0 chr11 41962286 41962311 -106821161 + AT_rich Low_complexity Low_complexity 1 25 0 732 181 14 0 chr11 41963152 41963290 -106820182 + FRAM SINE Alu 36 175 -1 22 56 0 0 chr11 41963482 41963518 -106819954 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 41963929 41963952 -106819520 + (CAA)n Simple_repeat Simple_repeat 2 24 0 403 215 19 19 chr11 41964383 41964490 -106818982 + FLAM_A SINE Alu 22 128 -5 23 0 0 0 chr11 41964827 41964850 -106818622 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 41964865 41964894 -106818578 + AT_rich Low_complexity Low_complexity 1 29 0 1830 342 99 17 chr11 41965368 41966583 -106816889 + L2 LINE L2 1781 3120 -193 3008 208 22 27 chr11 41966583 41967296 -106816176 - MER67C LTR ERV1 0 710 1 1830 342 99 17 chr11 41967296 41967502 -106815970 + L2 LINE L2 3120 3308 -5 35 41 0 0 chr11 41967502 41967551 -106815921 + AT_rich Low_complexity Low_complexity 1 49 0 757 285 0 0 chr11 41967637 41967809 -106815663 - FRAM SINE Alu -4 172 1 10011 75 13 1 chr11 41967820 41969129 -106814343 - L1P LINE L1 -4820 1326 2 2918 162 71 58 chr11 41969137 41969425 -106814047 - L1MC1 LINE L1 -66 6267 5984 1741 145 68 41 chr11 41969425 41969790 -106813682 - THE1C LTR MaLR 0 375 1 2918 162 71 58 chr11 41969790 41970209 -106813263 - L1MC1 LINE L1 -349 5984 5551 11316 229 38 23 chr11 41971538 41976782 -106806690 + L1PA16 LINE L1 783 6205 -18 692 242 1 7 chr11 41976787 41976951 -106806521 - L1MC/D LINE L1 -763 5570 5404 2327 101 3 0 chr11 41977036 41977342 -106806130 + AluSc SINE Alu 3 309 0 1594 234 8 66 chr11 41978518 41979006 -106804466 + MLT1C LTR MaLR 6 465 -2 306 306 127 19 chr11 41979957 41980114 -106803358 - MIR SINE MIR -68 194 21 40 21 0 0 chr11 41980133 41980180 -106803292 + AT_rich Low_complexity Low_complexity 1 47 0 1381 91 15 0 chr11 41982262 41982459 -106801013 + L1PA12 LINE L1 5969 6168 0 25 31 0 0 chr11 41984350 41984382 -106799090 + AT_rich Low_complexity Low_complexity 1 32 0 315 378 43 10 chr11 41985432 41985641 -106797831 + MIR SINE MIR 41 256 -6 271 299 0 0 chr11 41985872 41985949 -106797523 + MLT1J1 LTR MaLR 1 77 -369 280 265 66 53 chr11 41985974 41986125 -106797347 + MLT1J2 LTR MaLR 137 289 -161 1597 241 41 66 chr11 41986157 41986688 -106796784 + MLT1F LTR MaLR 25 542 0 1008 222 13 44 chr11 41986838 41987063 -106796409 - MER20 DNA MER1_type -1 218 1 226 221 163 35 chr11 41987093 41987179 -106796293 + MIR3 SINE MIR 73 169 -39 392 311 98 0 chr11 41987802 41987934 -106795538 + MIR SINE MIR 2 146 -116 264 250 50 0 chr11 41988679 41988759 -106794713 + LTR16A1 LTR ERVL 372 455 -2 414 70 0 0 chr11 41989008 41989065 -106794407 - L1PA8 LINE L1 -5 6167 6111 180 0 0 0 chr11 41989217 41989237 -106794235 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4451 195 75 29 chr11 41991226 41991591 -106791881 + L1MC3 LINE L1 6626 6973 -812 1830 138 67 28 chr11 41991591 41991952 -106791520 - THE1C LTR MaLR 0 375 1 4451 195 75 29 chr11 41991952 41992681 -106790791 + L1MC3 LINE L1 6973 7770 -15 22 35 0 0 chr11 41992686 41992715 -106790757 + AT_rich Low_complexity Low_complexity 1 29 0 2003 92 0 7 chr11 41993336 41993619 -106789853 + AluY SINE Alu 21 301 -10 1918 101 11 31 chr11 41993765 41994052 -106789420 + AluSq SINE Alu 1 281 -32 270 136 0 0 chr11 41994056 41994100 -106789372 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr11 41994228 41994258 -106789214 + AT_rich Low_complexity Low_complexity 1 30 0 1090 188 0 0 chr11 41994272 41994458 -106789014 - L1PA16 LINE L1 -73 6093 5908 8259 203 31 45 chr11 41994461 41995568 -106787904 - L1PA16 LINE L1 -638 5528 4408 297 0 0 0 chr11 41995568 41995601 -106787871 + (TG)n Simple_repeat Simple_repeat 1 33 0 8259 203 31 45 chr11 41995601 41995801 -106787671 - L1PA16 LINE L1 -1758 4408 4207 2219 94 0 7 chr11 41995801 41996088 -106787384 - AluSg1 SINE Alu -24 285 1 8259 203 31 45 chr11 41996088 41997280 -106786192 - L1PA16 LINE L1 -1959 4207 3073 21 0 0 0 chr11 41997954 41997975 -106785497 + AT_rich Low_complexity Low_complexity 1 21 0 2240 98 0 0 chr11 41998659 41998954 -106784518 + AluSx SINE Alu 1 295 -17 353 257 28 9 chr11 41999700 41999809 -106783663 + MIR SINE MIR 106 216 -46 21 0 0 0 chr11 42000036 42000057 -106783415 + AT_rich Low_complexity Low_complexity 1 21 0 2057 151 119 8 chr11 42000299 42000684 -106782788 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr11 42001300 42001328 -106782144 + AT_rich Low_complexity Low_complexity 1 28 0 260 306 117 17 chr11 42001436 42001616 -106781856 + MIR SINE MIR 6 203 -59 186 328 33 0 chr11 42002772 42002833 -106780639 + L2 LINE L2 2866 2928 -344 1991 121 14 0 chr11 42003354 42003643 -106779829 - AluSx SINE Alu -19 293 1 185 393 22 0 chr11 42004082 42004171 -106779301 + L2 LINE L2 2278 2368 -946 26 0 0 0 chr11 42004636 42004662 -106778810 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr11 42004707 42004744 -106778728 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr11 42004947 42004984 -106778488 + AT_rich Low_complexity Low_complexity 1 37 0 4405 229 64 36 chr11 42005019 42006884 -106776588 - L1 LINE L1 -2776 4789 2977 522 0 0 0 chr11 42006884 42006942 -106776530 + (TG)n Simple_repeat Simple_repeat 2 59 0 4405 229 64 36 chr11 42006942 42007021 -106776451 - L1 LINE L1 -4588 2977 2902 2247 71 3 3 chr11 42007021 42007348 -106776124 - AluY SINE Alu 0 327 1 4405 229 64 36 chr11 42007348 42008082 -106775390 - L1 LINE L1 -4663 2902 2028 13953 186 57 21 chr11 42008103 42012817 -106770655 - L1PB1 LINE L1 -1 6866 2325 216 0 0 0 chr11 42012817 42012841 -106770631 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 13953 186 57 21 chr11 42012841 42012959 -106770513 - L1PB1 LINE L1 -4542 2325 2213 2075 86 65 0 chr11 42012959 42013237 -106770235 - AluSq SINE Alu -17 296 1 13953 186 57 21 chr11 42013237 42014414 -106769058 - L1PB1 LINE L1 -4654 2213 634 941 195 26 0 chr11 42014415 42014605 -106768867 - L1PB1 LINE L1 -6666 197 3 322 310 32 58 chr11 42014617 42014772 -106768700 - L1 LINE L1 -5541 2024 1874 25 0 0 0 chr11 42015031 42015056 -106768416 + AT_rich Low_complexity Low_complexity 1 25 0 1067 207 29 58 chr11 42015496 42015771 -106767701 - AluJo SINE Alu -24 288 22 354 291 152 7 chr11 42015927 42016078 -106767394 + MIR SINE MIR 88 260 -2 217 241 93 0 chr11 42016129 42016183 -106767289 + L2 LINE L2 3214 3272 0 29 28 0 0 chr11 42017106 42017142 -106766330 + AT_rich Low_complexity Low_complexity 1 36 0 253 372 90 6 chr11 42017451 42017607 -106765865 - MIR SINE MIR -91 171 3 230 341 12 0 chr11 42017630 42017715 -106765757 + GA-rich Low_complexity Low_complexity 2 87 0 30 0 0 0 chr11 42018236 42018266 -106765206 + AT_rich Low_complexity Low_complexity 1 30 0 1000 212 156 23 chr11 42018319 42018621 -106764851 - MER7A DNA MER2_type -6 340 1 309 279 136 7 chr11 42018631 42018771 -106764701 + L1ME4a LINE L1 5799 5956 -165 1690 180 35 12 chr11 42019329 42019668 -106763804 - L1PB4 LINE L1 -12 6144 5798 231 138 31 15 chr11 42019686 42019751 -106763721 + (TA)n Simple_repeat Simple_repeat 1 66 0 225 148 19 19 chr11 42019826 42019880 -106763592 + LTR66 LTR ERVL 386 439 -171 206 194 15 0 chr11 42019989 42020056 -106763416 + (TA)n Simple_repeat Simple_repeat 1 68 0 307 326 0 0 chr11 42020096 42020185 -106763287 - L1MC4 LINE L1 -1340 6702 6614 225 297 0 11 chr11 42020201 42020292 -106763180 + L1MC4 LINE L1 6614 6703 -1339 268 265 8 8 chr11 42020297 42020429 -106763043 + (TA)n Simple_repeat Simple_repeat 1 132 0 850 161 70 1 chr11 42020789 42021003 -106762469 - L1M2 LINE L1 -367 5789 5318 282 298 11 0 chr11 42021113 42021207 -106762265 + (TA)n Simple_repeat Simple_repeat 1 95 0 1720 211 18 0 chr11 42021713 42022054 -106761418 + MER7A DNA MER2_type 2 346 0 32 0 0 0 chr11 42022493 42022525 -106760947 + AT_rich Low_complexity Low_complexity 1 32 0 288 289 74 16 chr11 42023439 42023560 -106759912 + MIR SINE MIR 64 191 -71 288 230 106 6 chr11 42023606 42023736 -106759736 + MIR SINE MIR 104 248 -14 231 362 78 0 chr11 42024286 42024402 -106759070 - MIR3 SINE MIR -6 202 78 198 0 0 0 chr11 42024712 42024734 -106758738 + (CA)n Simple_repeat Simple_repeat 1 22 0 1614 116 22 25 chr11 42024938 42025215 -106758257 + HSMAR2 DNA Mariner 3 278 -1024 267 79 0 0 chr11 42025220 42025258 -106758214 + L1MA3 LINE L1 6166 6203 -102 232 132 0 0 chr11 42025225 42025263 -106758209 + L1MA4A LINE L1 6170 6207 -96 * 326 71 12 224 chr11 42025319 42025404 -106758068 + HSMAR2 DNA Mariner 271 337 -965 * 2380 149 7 12 chr11 42025400 42025808 -106757664 + HSMAR2 DNA Mariner 896 1301 -1 26 0 0 0 chr11 42026553 42026579 -106756893 + AT_rich Low_complexity Low_complexity 1 26 0 540 292 73 18 chr11 42027269 42027488 -106755984 + MIR SINE MIR 2 232 -30 330 269 70 39 chr11 42027495 42027752 -106755720 - L1ME LINE L1 -630 5532 5268 242 169 12 36 chr11 42027954 42028037 -106755435 + (TA)n Simple_repeat Simple_repeat 1 81 0 431 258 109 50 chr11 42028125 42028528 -106754944 - L1ME LINE L1 -1303 4843 4417 27 49 0 0 chr11 42028671 42028712 -106754760 + AT_rich Low_complexity Low_complexity 1 41 0 200 152 43 0 chr11 42029255 42029301 -106754171 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1387 158 32 7 chr11 42029573 42029852 -106753620 + L1MA7 LINE L1 6000 6285 -6 403 273 10 83 chr11 42030242 42030281 -106753191 - HAL1 LINE L1 -193 2314 2274 1539 191 112 16 chr11 42030281 42030657 -106752815 + MLT2D LTR ERVL 3 414 0 403 273 10 83 chr11 42030657 42030717 -106752755 - HAL1 LINE L1 -233 2274 2211 2012 95 8 0 chr11 42030717 42030981 -106752491 - AluSp SINE Alu -47 266 1 403 273 10 83 chr11 42030981 42031180 -106752292 - HAL1 LINE L1 -296 2211 2037 305 359 28 56 chr11 42031265 42031552 -106751920 - LTR67 LTR ERVL -272 285 7 21 36 0 0 chr11 42032366 42032394 -106751078 + AT_rich Low_complexity Low_complexity 1 28 0 238 286 0 0 chr11 42033357 42033427 -106750045 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1354 231 0 26 chr11 42033817 42033979 -106749493 - AluJo SINE Alu -17 295 143 2240 86 13 7 chr11 42033979 42034281 -106749191 - AluSq SINE Alu -9 304 1 1354 231 0 26 chr11 42034281 42034421 -106749051 - AluJo SINE Alu -169 143 1 23 0 0 0 chr11 42034769 42034792 -106748680 + AT_rich Low_complexity Low_complexity 1 23 0 635 342 136 10 chr11 42035614 42036183 -106747289 + L2 LINE L2 2662 3307 -6 1610 233 101 58 chr11 42036707 42037411 -106746061 + MER50 LTR ERV1 1 734 0 614 274 162 5 chr11 42037531 42037735 -106745737 - MIR SINE MIR -21 241 6 715 78 17 0 chr11 42038472 42038588 -106744884 + (TC)n Simple_repeat Simple_repeat 1 118 0 2275 144 23 0 chr11 42038829 42039183 -106744289 + THE1B LTR MaLR 3 364 0 207 306 83 0 chr11 42039798 42039870 -106743602 + L2 LINE L2 3173 3250 -22 221 363 59 10 chr11 42040191 42040293 -106743179 - L3b LINE CR1 -5 1578 1472 316 283 67 33 chr11 42040589 42040709 -106742763 - MLT1G1 LTR MaLR -44 551 428 2005 128 7 0 chr11 42040819 42041139 -106742333 - AluSx SINE Alu 0 322 1 247 268 24 12 chr11 42042554 42042636 -106740836 - MLT1H-int LTR MaLR -1284 87 5 411 291 84 103 chr11 42042640 42043115 -106740357 - MLT1H LTR MaLR 0 549 84 26 50 0 0 chr11 42043282 42043322 -106740150 + AT_rich Low_complexity Low_complexity 1 40 0 3056 101 12 2 chr11 42044639 42045063 -106738409 + MSTA LTR MaLR 1 428 0 293 353 45 0 chr11 42045865 42045998 -106737474 - MIR SINE MIR -56 206 68 439 222 7 111 chr11 42046410 42046554 -106736918 + L1MDa LINE L1 17 145 -6395 189 147 0 0 chr11 42046554 42046588 -106736884 + (GGA)n Simple_repeat Simple_repeat 3 36 0 366 271 14 32 chr11 42046648 42046876 -106736596 + CT-rich Low_complexity Low_complexity 1 224 0 243 0 0 0 chr11 42047360 42047387 -106736085 + (A)n Simple_repeat Simple_repeat 1 27 0 1962 129 3 32 chr11 42047399 42047709 -106735763 + AluSq SINE Alu 1 301 -12 263 227 45 0 chr11 42047710 42047798 -106735674 - L1MC4 LINE L1 -1339 6703 6612 453 94 35 0 chr11 42047798 42047883 -106735589 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 36 0 0 chr11 42047984 42048012 -106735460 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 42048034 42048059 -106735413 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 42048412 42048437 -106735035 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr11 42048529 42048558 -106734914 + AT_rich Low_complexity Low_complexity 1 29 0 1552 0 0 0 chr11 42048697 42048864 -106734608 + AluYa5 SINE Alu 144 310 -1 1678 163 38 0 chr11 42048901 42049189 -106734283 - AluSx SINE Alu -13 299 1 247 200 20 0 chr11 42049199 42049249 -106734223 - L1MC/D LINE L1 -753 5591 5541 33 0 0 0 chr11 42049459 42049492 -106733980 + AT_rich Low_complexity Low_complexity 1 33 0 38 68 0 0 chr11 42049791 42049864 -106733608 + AT_rich Low_complexity Low_complexity 1 73 0 1804 157 7 0 chr11 42050100 42050380 -106733092 - AluJb SINE Alu -30 282 1 2082 92 3 11 chr11 42051117 42051401 -106732071 + AluSx SINE Alu 1 282 -30 1463 54 8 46 chr11 42051698 42051939 -106731533 + HERVK9 LTR ERVK 2555 2786 -3130 7226 73 8 11 chr11 42051939 42052891 -106730581 + HERVK9 LTR ERVK 3711 4660 -1256 507 164 53 26 chr11 42052921 42053073 -106730399 - L1PA5 LINE L1 -18 6136 5981 709 200 27 26 chr11 42053178 42053361 -106730111 - L1PB4 LINE L1 -190 5966 5783 228 131 33 16 chr11 42053364 42053425 -106730047 + (TA)n Simple_repeat Simple_repeat 1 62 0 294 164 0 0 chr11 42053509 42053564 -106729908 + (TA)n Simple_repeat Simple_repeat 1 55 0 182 179 18 0 chr11 42053663 42053719 -106729753 + (TA)n Simple_repeat Simple_repeat 1 57 0 315 287 37 0 chr11 42053742 42053850 -106729622 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 261 341 96 7 chr11 42054497 42054632 -106728840 + L2 LINE L2 2058 2204 -1110 2092 137 3 0 chr11 42054632 42054931 -106728541 - AluSx SINE Alu -12 300 1 1603 164 19 61 chr11 42054945 42055123 -106728349 - AluJb SINE Alu -14 298 137 2220 104 3 0 chr11 42055123 42055421 -106728051 - AluSp SINE Alu -12 301 3 1603 164 19 61 chr11 42055421 42055553 -106727919 - AluJb SINE Alu -175 137 1 474 170 22 74 chr11 42055848 42055983 -106727489 + AluSp SINE Alu 1 128 -185 312 278 17 39 chr11 42056761 42056941 -106726531 + GA-rich Low_complexity Low_complexity 3 178 0 456 139 0 30 chr11 42057149 42057250 -106726222 + (GGA)n Simple_repeat Simple_repeat 1 98 0 1322 232 34 22 chr11 42057250 42057573 -106725899 + L1MDa LINE L1 116 442 -6098 776 234 33 120 chr11 42057573 42058082 -106725390 + MER4C LTR ERV1 1 465 0 974 293 173 49 chr11 42058087 42058318 -106725154 + L1MDa LINE L1 444 645 -5895 1976 127 0 35 chr11 42058318 42058634 -106724838 + AluSx SINE Alu 1 305 -7 974 293 173 49 chr11 42058634 42058893 -106724579 + L1MDa LINE L1 645 995 -5545 1116 208 56 28 chr11 42058948 42059232 -106724240 + MER67C LTR ERV1 108 399 -311 952 211 30 42 chr11 42059414 42059535 -106723937 + L1MDa LINE L1 1056 1177 -5363 3582 134 4 2 chr11 42059535 42060088 -106723384 - MER41A LTR ERV1 0 554 1 952 211 30 42 chr11 42060088 42060297 -106723175 + L1MDa LINE L1 1177 1382 -5158 991 227 78 13 chr11 42060711 42061098 -106722374 - MER113 DNA MER1_type? -75 446 35 1554 171 7 4 chr11 42062258 42062539 -106720933 + L1PA16 LINE L1 5885 6166 0 15398 100 8 0 chr11 42064062 42067094 -106716378 + L1PA7 LINE L1 3086 6147 -7 21 57 0 0 chr11 42067095 42067130 -106716342 + AT_rich Low_complexity Low_complexity 1 35 0 1122 199 74 12 chr11 42067558 42067814 -106715658 - MLT1A1 LTR MaLR 0 365 94 9266 161 18 11 chr11 42067815 42069421 -106714051 + Tigger1 DNA MER2_type 2 1619 -799 2155 180 19 15 chr11 42069421 42069832 -106713640 + Tigger1 DNA MER2_type 2006 2418 0 454 200 11 11 chr11 42069838 42069928 -106713544 - MLT1A1 LTR MaLR -284 90 1 33 43 0 0 chr11 42070331 42070378 -106713094 + AT_rich Low_complexity Low_complexity 1 47 0 458 143 0 0 chr11 42070435 42070526 -106712946 - L1MA4A LINE L1 -7 6296 6206 298 295 69 45 chr11 42071307 42071843 -106711629 - L1M4 LINE L1 -777 5369 4821 517 314 75 34 chr11 42072043 42072457 -106711015 - L1ME3A LINE L1 -75 6095 5665 24 67 0 0 chr11 42072575 42072620 -106710852 + AT_rich Low_complexity Low_complexity 1 45 0 28 95 0 0 chr11 42072705 42072789 -106710683 + AT_rich Low_complexity Low_complexity 1 84 0 8209 100 8 4 chr11 42072789 42073450 -106710022 - L1PA7 LINE L1 -13 6456 5799 2141 128 0 3 chr11 42073450 42073756 -106709716 - AluY SINE Alu -6 305 1 8209 100 8 4 chr11 42073756 42075083 -106708389 - L1PA7 LINE L1 -670 5799 4476 18665 114 19 19 chr11 42075084 42079094 -106704378 - L1PA7 LINE L1 -2409 4052 8 328 309 149 6 chr11 42079089 42079451 -106704021 - L1ME LINE L1 -4735 1526 1113 * 1310 231 24 10 chr11 42079522 42079820 -106703652 - AluJo SINE Alu 0 302 1 24 0 0 0 chr11 42080096 42080120 -106703352 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 42080330 42080354 -106703118 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr11 42080393 42080444 -106703028 + AT_rich Low_complexity Low_complexity 1 51 0 1935 142 57 132 chr11 42080488 42081077 -106702395 - MLT2A2 LTR ERVL 0 554 1 799 245 31 43 chr11 42081739 42082190 -106701282 - L1ME LINE L1 -5034 1049 718 501 174 0 0 chr11 42082223 42082321 -106701151 + CT-rich Low_complexity Low_complexity 2 99 0 1592 169 137 13 chr11 42082386 42082791 -106700681 - L1MB8 LINE L1 -2 6176 5720 1910 73 0 25 chr11 42083274 42083548 -106699924 + AluY SINE Alu 35 301 -10 215 140 20 0 chr11 42083548 42083598 -106699874 + (TA)n Simple_repeat Simple_repeat 2 52 0 2066 100 48 0 chr11 42084918 42085207 -106698265 - AluSx SINE Alu -9 303 1 23 33 0 0 chr11 42085601 42085631 -106697841 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr11 42086248 42086282 -106697190 + (A)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr11 42087223 42087252 -106696220 + AT_rich Low_complexity Low_complexity 1 29 0 2256 108 0 6 chr11 42087436 42087750 -106695722 + AluSx SINE Alu 1 312 0 9131 220 27 9 chr11 42088062 42091237 -106692235 - L1PA16 LINE L1 0 6166 2936 1957 118 0 65 chr11 42092000 42092322 -106691150 + AluSx SINE Alu 1 301 -11 38 39 0 0 chr11 42092399 42092451 -106691021 + AT_rich Low_complexity Low_complexity 1 52 0 1036 62 0 8 chr11 42093336 42093465 -106690007 - AluSq/x SINE Alu -185 128 1 21 0 0 0 chr11 42093738 42093759 -106689713 + AT_rich Low_complexity Low_complexity 1 21 0 1691 176 3 10 chr11 42094717 42095007 -106688465 - AluJb SINE Alu -24 288 1 22 0 0 0 chr11 42096178 42096200 -106687272 + AT_rich Low_complexity Low_complexity 1 22 0 2155 131 7 3 chr11 42097309 42097615 -106685857 - AluJb SINE Alu -5 307 1 1315 156 31 9 chr11 42097620 42097845 -106685627 - AluJo SINE Alu -24 288 59 286 229 60 24 chr11 42099074 42099157 -106684315 + L1MC5 LINE L1 7832 7917 -44 1868 105 0 87 chr11 42099159 42099306 -106684166 + AluSx SINE Alu 1 106 -206 2222 60 0 11 chr11 42099306 42099620 -106683852 + AluY SINE Alu 2 312 0 1868 105 0 87 chr11 42099620 42099805 -106683667 + AluSx SINE Alu 106 305 -7 1656 174 0 18 chr11 42100389 42100671 -106682801 + AluJo SINE Alu 12 288 -24 1250 186 68 24 chr11 42100833 42101081 -106682391 + AluJo SINE Alu 1 259 -53 1399 223 48 66 chr11 42101192 42101676 -106681796 + HAL1 LINE L1 1592 2066 -441 1159 176 50 9 chr11 42101858 42102079 -106681393 - MLT1D LTR MaLR -6 499 270 950 179 35 25 chr11 42102107 42102308 -106681164 - MLT1D LTR MaLR -302 203 1 1580 177 46 7 chr11 42102473 42102756 -106680716 + AluSx SINE Alu 1 294 -18 300 143 0 0 chr11 42103202 42103251 -106680221 - FLAM_A SINE Alu 0 133 85 1104 148 0 0 chr11 42103730 42103899 -106679573 + L1PA8 LINE L1 5993 6161 -11 6438 206 31 6 chr11 42103917 42106155 -106677317 + L1PA15 LINE L1 3888 6165 0 935 225 58 60 chr11 42106155 42106590 -106676882 - Looper DNA T2_type -1124 434 1 21 71 0 0 chr11 42107141 42107183 -106676289 + AT_rich Low_complexity Low_complexity 1 42 0 458 19 0 0 chr11 42107911 42107963 -106675509 + (TA)n Simple_repeat Simple_repeat 1 52 0 252 0 0 0 chr11 42107964 42107992 -106675480 + (T)n Simple_repeat Simple_repeat 1 28 0 224 359 51 17 chr11 42108621 42108738 -106674734 - MER5A DNA MER1_type 0 189 69 293 205 2 0 chr11 42108908 42108986 -106674486 + L1MA4A LINE L1 6219 6297 -5 2425 52 0 0 chr11 42109188 42109478 -106673994 - AluY SINE Alu -21 290 1 267 306 70 45 chr11 42109631 42109788 -106673684 + MIR SINE MIR 52 212 -50 233 293 0 13 chr11 42110751 42110826 -106672646 - L1MC5 LINE L1 -1178 6783 6710 273 174 28 76 chr11 42111551 42111695 -106671777 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 211 337 22 11 chr11 42111711 42111803 -106671669 - MIR SINE MIR -140 122 30 2200 65 0 46 chr11 42112001 42112308 -106671164 - AluY SINE Alu -18 293 1 2155 124 0 0 chr11 42112618 42112925 -106670547 + AluSx SINE Alu 6 312 0 180 0 0 0 chr11 42113745 42113765 -106669707 + (TTA)n Simple_repeat Simple_repeat 3 22 0 16643 29 2 0 chr11 42113765 42116508 -106666964 - L1PA3 LINE L1 -18 6137 3391 4086 103 5 0 chr11 42116940 42117530 -106665942 - L1MA2 LINE L1 -9 6295 5703 881 210 0 6 chr11 42117531 42117707 -106665765 + L1P LINE L1 3707 3881 -2265 * 2102 60 4 0 chr11 42117706 42117974 -106665498 + L1PA8 LINE L1 5667 5935 -237 203 248 105 67 chr11 42118938 42119043 -106664429 - MIR3 SINE MIR -41 167 86 24 0 0 0 chr11 42119164 42119188 -106664284 + AT_rich Low_complexity Low_complexity 1 24 0 323 255 68 51 chr11 42120443 42120638 -106662834 + MLT1J LTR MaLR 28 262 -249 22 35 0 0 chr11 42120841 42120870 -106662602 + AT_rich Low_complexity Low_complexity 1 29 0 423 347 65 0 chr11 42120964 42121180 -106662292 - MIR SINE MIR -13 249 20 223 358 32 11 chr11 42121129 42121224 -106662248 + MIR SINE MIR 20 116 -146 * 213 326 184 23 chr11 42121346 42121607 -106661865 + L3 LINE CR1 1274 1576 -1 22 35 0 0 chr11 42121791 42121820 -106661652 + AT_rich Low_complexity Low_complexity 1 29 0 1020 225 0 14 chr11 42121874 42122087 -106661385 + MER6B DNA MER2_type 1 210 0 258 105 0 0 chr11 42123349 42123387 -106660085 + (TA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr11 42123657 42123695 -106659777 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 42123969 42123991 -106659481 + AT_rich Low_complexity Low_complexity 1 22 0 3122 119 13 33 chr11 42124970 42125044 -106658428 - MER75 DNA T2_type -3 511 437 1866 137 4 0 chr11 42125044 42125315 -106658157 + AluSx SINE Alu 1 272 -40 201 39 0 0 chr11 42125315 42125341 -106658131 + (CA)n Simple_repeat Simple_repeat 2 27 0 3122 119 13 33 chr11 42125341 42125786 -106657686 - MER75 DNA T2_type -75 439 1 517 284 152 65 chr11 42126223 42126652 -106656820 + MLT1C LTR MaLR 1 466 -1 1460 171 4 0 chr11 42127208 42127466 -106656006 + L1MA7 LINE L1 5320 5578 -713 1024 168 15 0 chr11 42127466 42127659 -106655813 + L1MA7 LINE L1 6070 6275 -16 190 397 13 0 chr11 42127903 42127981 -106655491 + L2 LINE L2 1481 1559 -1755 21 0 0 0 chr11 42128154 42128175 -106655297 + AT_rich Low_complexity Low_complexity 1 21 0 218 256 75 75 chr11 42129770 42129903 -106653569 - MIR SINE MIR 0 262 130 1979 143 3 3 chr11 42131340 42131647 -106651825 - AluSg SINE Alu -3 307 1 396 0 0 0 chr11 42131673 42131717 -106651755 + (CA)n Simple_repeat Simple_repeat 1 44 0 321 345 39 20 chr11 42131752 42131955 -106651517 - L1MC4a LINE L1 -1894 5914 5708 31 58 0 0 chr11 42132298 42132350 -106651122 + AT_rich Low_complexity Low_complexity 1 52 0 1373 198 35 79 chr11 42132617 42132935 -106650537 + AluJb SINE Alu 3 306 -6 387 0 0 0 chr11 42133349 42133392 -106650080 + (CA)n Simple_repeat Simple_repeat 2 44 0 2281 69 3 7 chr11 42135111 42135414 -106648058 + AluY SINE Alu 1 302 -9 24 0 0 0 chr11 42136111 42136135 -106647337 + AT_rich Low_complexity Low_complexity 1 24 0 255 276 164 8 chr11 42136221 42136355 -106647117 - MIR SINE MIR -30 232 78 846 185 117 27 chr11 42136936 42137158 -106646314 - MER45B DNA AcHobo -86 954 713 828 265 91 81 chr11 42137364 42138030 -106645442 - MER45 DNA AcHobo -279 674 1 24 0 0 0 chr11 42139409 42139433 -106644039 + AT_rich Low_complexity Low_complexity 1 24 0 845 228 0 0 chr11 42140535 42140702 -106642770 - AluJb SINE Alu -11 301 135 306 228 150 16 chr11 42141501 42141628 -106641844 - Charlie8 DNA MER1_type -2201 216 73 334 286 41 41 chr11 42141726 42141967 -106641505 - L1ME3 LINE L1 -77 6085 5745 323 287 115 57 chr11 42142059 42142303 -106641169 + L1MC/D LINE L1 4697 4954 -1192 210 89 36 54 chr11 42142458 42142514 -106640958 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 227 335 84 49 chr11 42142575 42142778 -106640694 + L1MC/D LINE L1 5510 5719 -2089 1672 187 53 9 chr11 42142795 42143132 -106640340 - MLT1A1 LTR MaLR -2 363 12 237 308 0 0 chr11 42143141 42143206 -106640266 + L1MC/D LINE L1 5739 5803 -2005 506 292 86 18 chr11 42143688 42143999 -106639473 + L1ME LINE L1 5254 5586 -584 208 221 26 0 chr11 42144185 42144262 -106639210 + (TA)n Simple_repeat Simple_repeat 1 79 0 237 171 23 80 chr11 42144534 42144622 -106638850 + L1M2c LINE L1 1853 1933 -4786 5211 234 62 51 chr11 42145142 42145337 -106638135 + L1M2 LINE L1 9 200 -6011 5267 87 17 11 chr11 42145337 42146098 -106637374 - MER4E LTR ERV1 0 766 1 5211 234 62 51 chr11 42146098 42147923 -106635549 + L1M2 LINE L1 200 2039 -4172 492 97 0 0 chr11 42147964 42148036 -106635436 + Alu SINE Alu 220 291 -18 3549 210 47 38 chr11 42148163 42149696 -106633776 + L1M2 LINE L1 4304 5849 -527 2994 299 32 12 chr11 42149699 42150758 -106632714 + L1M2a LINE L1 11 948 -6220 * 3275 237 67 86 chr11 42150755 42151006 -106632466 + L1M2a LINE L1 2017 2271 -4896 771 186 0 0 chr11 42151006 42151130 -106632342 - FLAM_C SINE Alu -19 124 1 3275 237 67 86 chr11 42151130 42152884 -106630588 + L1M2a LINE L1 2271 4105 -3062 491 307 80 33 chr11 42152956 42153405 -106630067 - L1M1 LINE L1 -4114 3451 2982 4814 250 77 49 chr11 42153417 42155100 -106628372 - L1M1 LINE L1 -5118 2448 720 443 323 12 6 chr11 42155205 42155372 -106628100 + L1MEc LINE L1 111 278 -6118 454 296 63 39 chr11 42155741 42155947 -106627525 - MIR SINE MIR -3 259 49 186 256 67 22 chr11 42156547 42156637 -106626835 - L2 LINE L2 -1585 1729 1636 234 81 0 0 chr11 42156950 42156987 -106626485 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1373 173 59 0 chr11 42156990 42157245 -106626227 - AluJb SINE Alu -5 307 38 1328 303 76 46 chr11 42157625 42158669 -106624803 + L2 LINE L2 2197 3311 -2 260 269 19 119 chr11 42158951 42159111 -106624361 + MLT1H LTR MaLR 406 549 0 34 89 0 0 chr11 42159507 42159597 -106623875 + AT_rich Low_complexity Low_complexity 1 90 0 2295 62 3 0 chr11 42160553 42160842 -106622630 + AluY SINE Alu 3 292 -19 185 323 75 11 chr11 42161458 42161551 -106621921 - L2 LINE L2 -67 3205 3107 218 331 69 15 chr11 42161716 42161846 -106621626 + MIR SINE MIR 94 230 -32 1792 107 0 11 chr11 42161846 42162116 -106621356 - AluSx SINE Alu -8 304 38 205 362 0 0 chr11 42163509 42163578 -106619894 + MIR SINE MIR 72 140 -122 1406 204 16 25 chr11 42163586 42163847 -106619625 + L1M4 LINE L1 5321 5580 -598 2139 102 0 16 chr11 42163847 42164152 -106619320 - AluSg SINE Alu -10 300 1 1406 204 16 25 chr11 42164152 42164204 -106619268 + L1M4 LINE L1 5580 5631 -547 26 0 0 0 chr11 42164417 42164443 -106619029 + AT_rich Low_complexity Low_complexity 1 26 0 1298 183 41 16 chr11 42164782 42165074 -106618398 - MER61B LTR ERV1 -28 396 5 617 206 127 42 chr11 42165234 42165423 -106618049 - MER3 DNA MER1_type 0 209 5 387 264 123 26 chr11 42165854 42166009 -106617463 - MIR SINE MIR -36 226 57 1735 172 0 43 chr11 42166611 42166937 -106616535 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 42167046 42167068 -106616404 + AT_rich Low_complexity Low_complexity 1 22 0 7758 19 0 0 chr11 42167431 42168533 -106614939 - L1PA2 LINE L1 -2 6153 5052 10332 25 1 0 chr11 42168533 42169754 -106613718 + L1PA2 LINE L1 3819 5040 -1106 184 306 82 12 chr11 42169872 42169957 -106613515 + MIR SINE MIR 121 211 -51 705 284 100 0 chr11 42170583 42170844 -106612628 + MLT1H LTR MaLR 12 298 -251 248 251 156 45 chr11 42170879 42171055 -106612417 + MLT1H LTR MaLR 332 527 -28 630 295 154 4 chr11 42171055 42171289 -106612183 - MLT1H LTR MaLR 0 549 281 326 309 38 60 chr11 42171359 42171912 -106611560 + L1MEc LINE L1 1213 1753 -4643 233 317 30 18 chr11 42172246 42172410 -106611062 + L1MEc LINE L1 2135 2300 -4096 2158 75 24 17 chr11 42172455 42172749 -106610723 + AluY SINE Alu 1 296 -15 377 294 24 29 chr11 42172832 42173002 -106610470 + L1MEc LINE L1 2368 2536 -3679 1981 140 32 57 chr11 42173631 42174003 -106609469 - THE1B LTR MaLR -1 363 1 11484 97 1 27 chr11 42174008 42175624 -106607848 - THE1B-int LTR MaLR -6 1574 1 2041 157 33 30 chr11 42175624 42175987 -106607485 - THE1B LTR MaLR 0 364 1 667 158 9 9 chr11 42176131 42176245 -106607227 + MLT1D LTR MaLR 1 114 -391 4189 109 15 0 chr11 42176245 42176861 -106606611 - L1PB1 LINE L1 -1 6150 5526 207 176 0 0 chr11 42176971 42177005 -106606467 + (CA)n Simple_repeat Simple_repeat 1 34 0 639 373 88 18 chr11 42178067 42178368 -106605104 + L2 LINE L2 2367 2645 -669 2111 73 38 14 chr11 42178368 42178656 -106604816 - AluY SINE Alu -16 295 1 639 373 88 18 chr11 42178656 42178925 -106604547 + L2 LINE L2 2645 2977 -337 243 337 169 0 chr11 42179864 42180030 -106603442 - L2 LINE L2 -246 3067 2874 2122 107 17 0 chr11 42180055 42180346 -106603126 - AluSp SINE Alu -17 296 1 1959 99 0 18 chr11 42180444 42180728 -106602744 - AluSc SINE Alu -4 305 27 474 208 0 0 chr11 42180828 42180929 -106602543 - L1MA9 LINE L1 -38 6274 6174 23 33 0 0 chr11 42181140 42181170 -106602302 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr11 42181173 42181199 -106602273 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 340 64 0 0 chr11 42181205 42181252 -106602220 - L1PA3 LINE L1 -3 6152 6106 1716 169 10 3 chr11 42182191 42182487 -106600985 + AluSx SINE Alu 5 302 -10 32 75 0 0 chr11 42182599 42182666 -106600806 + AT_rich Low_complexity Low_complexity 1 67 0 210 213 21 0 chr11 42183417 42183464 -106600008 + A-rich Low_complexity Low_complexity 1 48 0 29 47 0 0 chr11 42183524 42183567 -106599905 + AT_rich Low_complexity Low_complexity 1 43 0 314 220 104 55 chr11 42183956 42184120 -106599352 + L1MC4a LINE L1 7347 7540 -268 394 271 36 70 chr11 42184395 42184676 -106598796 + L1MC4 LINE L1 7672 7933 -28 40 49 0 0 chr11 42185359 42185420 -106598052 + AT_rich Low_complexity Low_complexity 1 61 0 230 379 126 11 chr11 42186253 42186443 -106597029 + L3 LINE CR1 1088 1299 -278 29 47 0 0 chr11 42188051 42188094 -106595378 + AT_rich Low_complexity Low_complexity 1 43 0 1031 266 183 52 chr11 42188131 42188700 -106594772 + MLT1E2 LTR MaLR 1 565 -61 272 322 197 7 chr11 42189074 42189226 -106594246 - L2 LINE L2 -177 3136 2956 23 33 0 0 chr11 42189307 42189337 -106594135 + AT_rich Low_complexity Low_complexity 1 30 0 2780 13 0 6 chr11 42190195 42190512 -106592960 - AluYb8 SINE Alu -3 315 1 3191 150 16 69 chr11 42190520 42191185 -106592287 + L1PA16 LINE L1 5527 6156 -10 647 280 26 33 chr11 42191203 42191474 -106591998 + L1ME3A LINE L1 5894 6162 -8 906 144 11 8 chr11 42192057 42192323 -106591149 + CT-rich Low_complexity Low_complexity 1 267 0 2110 124 7 3 chr11 42192343 42192650 -106590822 - AluSx SINE Alu -4 308 1 192 200 0 0 chr11 42194810 42194860 -106588612 + (TA)n Simple_repeat Simple_repeat 1 50 0 419 306 94 55 chr11 42194964 42195239 -106588233 + MER102a DNA MER1_type 45 330 0 716 213 22 70 chr11 42195335 42195565 -106587907 + MER20 DNA MER1_type 1 219 0 23 78 0 0 chr11 42196782 42196833 -106586639 + AT_rich Low_complexity Low_complexity 1 51 0 2717 265 76 26 chr11 42196842 42197889 -106585583 + L1MC4 LINE L1 6459 7570 -472 2008 120 11 0 chr11 42197889 42198202 -106585270 + AluSp SINE Alu 1 316 0 2717 265 76 26 chr11 42198202 42198290 -106585182 + L1MC4 LINE L1 7570 7652 -390 22 88 0 0 chr11 42198356 42198413 -106585059 + AT_rich Low_complexity Low_complexity 1 57 0 264 196 39 0 chr11 42198814 42198865 -106584607 - LTR52 LTR ERVL -19 402 350 2558 256 87 9 chr11 42198867 42199536 -106583936 - HERVL74 LTR ERVL -2858 2827 2107 581 186 0 0 chr11 42199723 42199825 -106583647 - HERVL74 LTR ERVL -3587 2098 1997 15450 34 7 0 chr11 42199825 42202445 -106581027 + L1PA3 LINE L1 3523 6148 -7 568 268 200 17 chr11 42202925 42203160 -106580312 - HERVL74 LTR ERVL -3688 1997 1720 286 177 32 16 chr11 42203145 42203207 -106580265 + HERVL74 LTR ERVL 1216 1278 -4407 * 767 250 20 10 chr11 42203344 42203548 -106579924 - LTR52 LTR ERVL -41 380 175 618 270 32 1 chr11 42203980 42204156 -106579316 - MLT1-int LTR MaLR -773 598 403 21 0 0 0 chr11 42204279 42204300 -106579172 + AT_rich Low_complexity Low_complexity 1 21 0 275 374 31 31 chr11 42205914 42206077 -106577395 - MIR3 SINE MIR -23 185 23 340 313 17 0 chr11 42206337 42206452 -106577020 + MER5C DNA MER1_type 1 117 -207 27 0 0 0 chr11 42206612 42206639 -106576833 + AT_rich Low_complexity Low_complexity 1 27 0 1563 202 7 14 chr11 42208399 42208681 -106574791 + AluJo SINE Alu 1 280 -32 2579 149 45 8 chr11 42208702 42209172 -106574300 + L1MA4 LINE L1 5679 6165 -135 385 204 0 20 chr11 42209172 42209270 -106574202 + L1MA3 LINE L1 6209 6304 -1 1654 210 44 44 chr11 42210874 42211307 -106572165 + Tigger2a DNA MER2_type 1 433 -1 360 0 0 0 chr11 42211393 42211433 -106572039 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 246 120 54 chr11 42212416 42213176 -106570296 - L1M4 LINE L1 -2081 4065 3256 34 65 0 0 chr11 42215040 42215102 -106568370 + AT_rich Low_complexity Low_complexity 1 62 0 431 295 30 93 chr11 42215592 42215860 -106567612 - L2 LINE L2 -453 2861 2611 1233 147 13 38 chr11 42216227 42216465 -106567007 - AluY SINE Alu -79 232 1 1446 221 39 6 chr11 42216465 42216777 -106566695 + MLT1A1 LTR MaLR 44 365 0 934 222 7 7 chr11 42217448 42217723 -106565749 - AluSx SINE Alu 0 312 38 226 329 15 0 chr11 42217867 42217952 -106565520 - MIR SINE MIR -81 127 64 372 315 68 59 chr11 42219338 42219659 -106563813 + L2 LINE L2 2990 3313 0 2182 94 0 7 chr11 42219819 42220118 -106563354 - AluSx SINE Alu -15 297 1 472 349 35 15 chr11 42220188 42220386 -106563086 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 42220413 42220456 -106563016 + AT_rich Low_complexity Low_complexity 1 43 0 982 88 14 0 chr11 42220639 42220787 -106562685 - L1PA2 LINE L1 -1 6154 6005 416 252 68 58 chr11 42221498 42221704 -106561768 + L2 LINE L2 3106 3313 0 2146 95 0 7 chr11 42221868 42222163 -106561309 - AluSx SINE Alu -19 293 1 549 328 35 15 chr11 42222233 42222431 -106561041 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 42222458 42222501 -106560971 + AT_rich Low_complexity Low_complexity 1 43 0 3531 19 0 0 chr11 42222684 42223095 -106560377 - L1PA2 LINE L1 -1 6154 5744 1527 154 199 121 chr11 42223195 42224344 -106559128 + LTR12 LTR ERV1 481 2435 -3 665 207 0 0 chr11 42224344 42224479 -106558993 + L1MA6 LINE L1 4950 5084 -1062 344 206 0 0 chr11 42224480 42224548 -106558924 - AluY SINE Alu -5 296 229 1184 87 12 6 chr11 42224548 42224709 -106558763 - AluY SINE Alu -149 162 1 4452 176 46 33 chr11 42224709 42225913 -106557559 + L1MA6 LINE L1 5077 6299 -1 219 307 79 44 chr11 42226800 42226914 -106556558 + MIR SINE MIR 79 196 -66 269 243 291 10 chr11 42227162 42227265 -106556207 + L2 LINE L2 3137 3268 -4 218 337 56 11 chr11 42227437 42227526 -106555946 - L2 LINE L2 -33 3280 3188 368 323 64 18 chr11 42227575 42227795 -106555677 - MIR SINE MIR -13 249 20 1899 180 37 37 chr11 42228224 42228775 -106554697 - MLT2A2 LTR ERVL 0 554 1 3018 172 26 4 chr11 42228776 42229792 -106553680 - L1P4 LINE L1 -435 5731 4697 222 241 19 0 chr11 42230247 42230301 -106553171 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 33 43 0 0 chr11 42231039 42231086 -106552386 + AT_rich Low_complexity Low_complexity 1 47 0 243 0 0 0 chr11 42231821 42231848 -106551624 + (T)n Simple_repeat Simple_repeat 1 27 0 1513 204 31 45 chr11 42232030 42232072 -106551400 + MLT1A1 LTR MaLR 13 54 -311 2114 102 10 26 chr11 42232072 42232385 -106551087 - AluY SINE Alu -3 308 1 1513 204 31 45 chr11 42232385 42232700 -106550772 + MLT1A1 LTR MaLR 54 365 0 2115 125 3 0 chr11 42233375 42233686 -106549786 - AluSx SINE Alu 0 312 1 431 281 115 75 chr11 42233686 42233964 -106549508 + L2 LINE L2 3024 3312 -1 252 0 0 0 chr11 42233997 42234025 -106549447 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr11 42235816 42235838 -106547634 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 42236522 42236546 -106546926 + AT_rich Low_complexity Low_complexity 1 24 0 189 331 39 66 chr11 42238895 42238947 -106544525 - MIR SINE MIR -59 203 151 2643 22 3 6 chr11 42238947 42239265 -106544207 - AluYb8 SINE Alu -1 317 1 189 331 39 66 chr11 42239265 42239393 -106544079 - MIR SINE MIR -111 151 28 1150 195 91 26 chr11 42239505 42239812 -106543660 - L1MB7 LINE L1 -7 6177 5851 339 243 40 72 chr11 42239950 42240013 -106543459 + MER103 DNA DNA 17 81 -85 2229 79 0 0 chr11 42240013 42240303 -106543169 - AluSg SINE Alu -20 290 1 339 243 40 72 chr11 42240303 42240391 -106543081 + MER103 DNA DNA 81 163 -3 204 365 26 9 chr11 42240478 42240593 -106542879 + MIR SINE MIR 32 148 -114 2763 170 85 11 chr11 42241109 42241663 -106541809 - L1MB1 LINE L1 0 6168 5574 22 0 0 0 chr11 42241916 42241938 -106541534 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr11 42242283 42242332 -106541140 + AT_rich Low_complexity Low_complexity 1 49 0 526 267 79 41 chr11 42242667 42242933 -106540539 - L1ME3A LINE L1 0 6170 5895 714 297 134 18 chr11 42242957 42243466 -106540006 - L1ME3A LINE L1 -349 5821 5254 36 100 0 0 chr11 42243673 42243793 -106539679 + AT_rich Low_complexity Low_complexity 1 120 0 2247 208 62 52 chr11 42243821 42244174 -106539298 + L1MC3 LINE L1 6637 6985 -800 1959 138 42 33 chr11 42244174 42244535 -106538937 - THE1B LTR MaLR 0 364 1 10831 106 14 1 chr11 42244535 42246096 -106537376 - THE1B-int LTR MaLR 0 1580 1 2149 125 42 31 chr11 42246096 42246456 -106537016 - THE1B LTR MaLR 0 364 1 2247 208 62 52 chr11 42246456 42246712 -106536760 + L1MC3 LINE L1 6984 7254 -531 316 155 35 0 chr11 42246719 42246777 -106536695 + MSTA LTR MaLR 2 61 -367 563 328 25 20 chr11 42248510 42248714 -106534758 - MIR SINE MIR -16 246 42 22 35 0 0 chr11 42249253 42249282 -106534190 + AT_rich Low_complexity Low_complexity 1 29 0 2252 234 41 44 chr11 42249289 42249604 -106533868 + L1MA3 LINE L1 5365 5679 -626 2042 181 35 0 chr11 42249604 42249979 -106533493 - MLT1B LTR MaLR -2 388 1 2252 234 41 44 chr11 42249979 42250388 -106533084 + L1MA3 LINE L1 5679 6087 -218 1211 339 117 27 chr11 42250513 42251521 -106531951 + L2 LINE L2 237 1335 -1979 9461 254 27 21 chr11 42251602 42254152 -106529320 - L1PA12 LINE L1 -1337 5512 2900 2791 13 0 0 chr11 42254152 42254463 -106529009 + AluYa5 SINE Alu 1 311 0 9461 254 27 21 chr11 42254463 42255950 -106527522 - L1PA12 LINE L1 -3949 2900 1423 2101 130 3 9 chr11 42256078 42256393 -106527079 - AluSp SINE Alu 0 313 1 2388 194 2 11 chr11 42256690 42257139 -106526333 - L1PA12 LINE L1 -6404 445 1 354 347 38 45 chr11 42257398 42257811 -106525661 + L2 LINE L2 2227 2707 -607 519 285 51 73 chr11 42258120 42258394 -106525078 + L2 LINE L2 2611 2878 -436 34 65 0 0 chr11 42258878 42258940 -106524532 + AT_rich Low_complexity Low_complexity 1 62 0 348 277 58 36 chr11 42259313 42259450 -106524022 + L1MCb LINE L1 1040 1179 -4866 25 75 0 0 chr11 42260294 42260347 -106523125 + AT_rich Low_complexity Low_complexity 1 53 0 32 26 0 0 chr11 42260603 42260642 -106522830 + AT_rich Low_complexity Low_complexity 1 39 0 364 268 31 10 chr11 42260798 42260895 -106522577 - L2 LINE L2 -1 3312 3214 376 338 40 7 chr11 42261154 42261302 -106522170 - L2 LINE L2 -631 2683 2531 21 57 0 0 chr11 42261405 42261440 -106522032 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr11 42261556 42261596 -106521876 + AT_rich Low_complexity Low_complexity 1 40 0 366 23 0 0 chr11 42262236 42262279 -106521193 + (TA)n Simple_repeat Simple_repeat 1 43 0 993 132 7 0 chr11 42262311 42262463 -106521009 - AluSg/x SINE Alu -22 288 136 881 121 15 0 chr11 42262463 42262595 -106520877 + AluSq/x SINE Alu 7 140 -173 200 111 22 0 chr11 42263188 42263233 -106520239 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 1758 218 33 0 chr11 42263830 42264192 -106519280 - MLT1B LTR MaLR -16 374 1 2173 176 82 13 chr11 42264193 42264683 -106518789 + L1MA3 LINE L1 5673 6198 -107 2340 90 0 0 chr11 42264711 42265012 -106518460 - AluY SINE Alu -10 301 1 613 272 45 48 chr11 42265025 42265315 -106518157 + L1ME1 LINE L1 5834 6122 -44 406 264 18 42 chr11 42265203 42265370 -106518102 + L1MA10 LINE L1 6171 6333 -1 * 1193 217 149 41 chr11 42265700 42266079 -106517393 - MLT1C LTR MaLR -7 460 33 216 0 0 0 chr11 42266079 42266103 -106517369 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1193 217 149 41 chr11 42266103 42266134 -106517338 - MLT1C LTR MaLR -434 33 7 1498 233 35 94 chr11 42266140 42266630 -106516842 - MLT1C-int LTR MaLR 0 1371 911 3438 230 30 32 chr11 42266773 42267655 -106515817 - MLT1C-int LTR MaLR -490 881 2 703 290 50 43 chr11 42267658 42267961 -106515511 - MLT1C LTR MaLR -2 465 161 22 0 0 0 chr11 42268162 42268184 -106515288 + AT_rich Low_complexity Low_complexity 1 22 0 548 212 88 15 chr11 42268256 42268393 -106515079 - MLT1C LTR MaLR -316 151 5 190 410 0 72 chr11 42268485 42268651 -106514821 + L2 LINE L2 3119 3272 0 186 103 0 0 chr11 42269140 42269169 -106514303 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 269 216 57 11 chr11 42269740 42269828 -106513644 + L1ME LINE L1 5768 5859 -262 21 0 0 0 chr11 42269837 42269858 -106513614 + AT_rich Low_complexity Low_complexity 1 21 0 403 322 62 19 chr11 42270170 42270237 -106513235 - MIR SINE MIR -1 261 198 8488 106 24 26 chr11 42270237 42271526 -106511946 + HSMAR1 DNA Mariner 2 1287 0 403 322 62 19 chr11 42271526 42271669 -106511803 - MIR SINE MIR -64 198 42 195 204 0 0 chr11 42271836 42271880 -106511592 + (CA)n Simple_repeat Simple_repeat 1 44 0 630 149 143 21 chr11 42272608 42272774 -106510698 + L1MA8 LINE L1 6101 6290 -1 293 0 0 26 chr11 42273480 42273518 -106509954 + (TG)n Simple_repeat Simple_repeat 2 38 0 459 301 208 21 chr11 42274105 42274441 -106509031 + L2 LINE L2 2359 2757 -557 3921 188 45 23 chr11 42274454 42275905 -106507567 + L1PB4 LINE L1 4316 5788 -368 229 32 0 0 chr11 42275932 42275963 -106507509 - L1PB4 LINE L1 -368 5788 5758 2003 156 39 0 chr11 42275971 42276331 -106507141 + L1PB4 LINE L1 5783 6156 0 621 309 125 36 chr11 42276331 42276817 -106506655 + L2 LINE L2 2776 3313 0 205 299 60 0 chr11 42277656 42277723 -106505749 + L2 LINE L2 3236 3306 -7 299 362 127 18 chr11 42277974 42278203 -106505269 + MIR SINE MIR 9 262 0 414 301 54 24 chr11 42278433 42278599 -106504873 + MIR SINE MIR 15 185 -77 463 291 58 6 chr11 42278647 42278819 -106504653 - MIR SINE MIR -69 193 13 216 266 0 2 chr11 42279244 42279297 -106504175 + MIR SINE MIR 61 112 -96 232 195 0 0 chr11 42279297 42279338 -106504134 - MSTA LTR MaLR 0 428 388 737 165 0 0 chr11 42279344 42279471 -106504001 - MSTA-int LTR MaLR -1097 554 428 * 1690 154 3 0 chr11 42279454 42279739 -106503733 - MSTA-int LTR MaLR -1365 286 1 1870 168 128 8 chr11 42279739 42280121 -106503351 - MSTA LTR MaLR 0 428 1 1384 228 64 105 chr11 42280180 42281112 -106502360 - LTR28 LTR ERV1 0 1020 1 214 244 25 17 chr11 42283018 42283137 -106500335 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 282 125 0 0 chr11 42284195 42284243 -106499229 + (CA)n Simple_repeat Simple_repeat 1 48 0 536 290 59 31 chr11 42284530 42284785 -106498687 + MIR SINE MIR 1 262 0 607 118 0 0 chr11 42285071 42285164 -106498308 + MLT2A2 LTR ERVL 1 93 -360 36764 74 11 17 chr11 42285164 42288278 -106495194 + HERVL-A1 LTR ERVL 810 3887 -1767 2482 70 0 13 chr11 42288278 42288593 -106494879 + AluY SINE Alu 1 311 0 36764 74 11 17 chr11 42288593 42290351 -106493121 + HERVL-A1 LTR ERVL 3887 5654 0 2267 115 75 11 chr11 42290353 42290728 -106492744 + MLT2A1 LTR ERVL 6 404 -40 384 90 29 0 chr11 42290778 42290794 -106492678 + MLT2A2 LTR ERVL 399 413 -40 351 0 0 0 chr11 42290794 42290833 -106492639 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 90 29 0 chr11 42290833 42290886 -106492586 + MLT2A2 LTR ERVL 413 453 0 270 0 0 0 chr11 42291737 42291767 -106491705 + (TA)n Simple_repeat Simple_repeat 2 31 0 1021 139 12 0 chr11 42291775 42291941 -106491531 - AluSg/x SINE Alu 0 312 145 952 123 14 0 chr11 42291942 42292080 -106491392 + AluSq/x SINE Alu 1 140 -172 200 111 22 0 chr11 42292679 42292724 -106490748 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 2319 72 16 3 chr11 42294101 42294408 -106489064 - AluY SINE Alu 0 311 1 21 36 0 0 chr11 42294421 42294449 -106489023 + AT_rich Low_complexity Low_complexity 1 28 0 531 231 52 8 chr11 42295155 42295289 -106488183 + MER5A DNA MER1_type 2 141 -48 610 222 8 0 chr11 42295289 42295406 -106488066 + MER63 DNA MER1_type 43 786 -50 381 331 50 33 chr11 42295473 42295654 -106487818 + MIR SINE MIR 13 196 -66 11712 156 65 21 chr11 42297306 42298552 -106484920 + L1M1 LINE L1 1225 2414 -5151 1974 102 74 0 chr11 42298552 42298836 -106484636 + AluY SINE Alu 1 305 -6 11712 156 65 21 chr11 42298836 42299870 -106483602 + L1M1 LINE L1 2414 3606 -3959 953 126 0 15 chr11 42299873 42300008 -106483464 + AluSq/x SINE Alu 1 133 -179 8069 85 35 3 chr11 42300018 42300176 -106483296 - L1P3 LINE L1 -351 5803 5652 342 0 0 0 chr11 42300176 42300214 -106483258 + (TA)n Simple_repeat Simple_repeat 1 38 0 8069 85 35 3 chr11 42300214 42301633 -106481839 - L1P3 LINE L1 -502 5652 4178 522 69 42 0 chr11 42301632 42301704 -106481768 + L1P3 LINE L1 4089 4163 -1983 * 2082 137 0 6 chr11 42301729 42302043 -106481429 + AluSx SINE Alu 1 312 0 331 279 66 50 chr11 42303465 42303723 -106479749 + L1MC4 LINE L1 7567 7828 -214 225 65 0 0 chr11 42303797 42303828 -106479644 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr11 42304005 42304030 -106479442 + AT_rich Low_complexity Low_complexity 1 25 0 2424 66 0 0 chr11 42304128 42304430 -106479042 - AluY SINE Alu -9 302 1 271 365 81 58 chr11 42304660 42305019 -106478453 + L2 LINE L2 130 496 -2818 279 257 54 0 chr11 42305020 42305094 -106478378 - MER58 DNA MER1_type -1 2419 2342 4149 26 10 12 chr11 42305165 42305672 -106477800 - L1PA4 LINE L1 -2 6153 5648 357 24 0 0 chr11 42305688 42305730 -106477742 + (CA)n Simple_repeat Simple_repeat 2 43 0 2496 27 3 0 chr11 42305849 42306145 -106477327 - L1PA5 LINE L1 -212 5942 5646 267 31 0 0 chr11 42306159 42306191 -106477281 + (CA)n Simple_repeat Simple_repeat 2 33 0 1489 305 215 27 chr11 42306322 42307125 -106476347 + L2 LINE L2 583 1233 -2081 2005 139 0 16 chr11 42307125 42307154 -106476318 - AluSx SINE Alu -1 311 283 333 0 0 0 chr11 42307154 42307191 -106476281 + (TG)n Simple_repeat Simple_repeat 2 38 0 2005 139 0 16 chr11 42307191 42307477 -106475995 - AluSx SINE Alu -29 283 1 1489 305 215 27 chr11 42307477 42307983 -106475489 + L2 LINE L2 1233 2139 -1175 427 298 43 58 chr11 42308061 42308249 -106475223 + Charlie2 DNA MER1_type 35 219 -2563 21 71 0 0 chr11 42309212 42309254 -106474218 + AT_rich Low_complexity Low_complexity 1 42 0 2222 77 0 17 chr11 42310718 42311017 -106472455 + AluY SINE Alu 1 294 -17 185 357 0 29 chr11 42311380 42311450 -106472022 - MIR SINE MIR -119 89 22 46 19 0 0 chr11 42311557 42311610 -106471862 + AT_rich Low_complexity Low_complexity 1 53 0 21 82 0 0 chr11 42312306 42312355 -106471117 + AT_rich Low_complexity Low_complexity 1 49 0 47 82 0 0 chr11 42312939 42313049 -106470423 + AT_rich Low_complexity Low_complexity 1 110 0 24 53 0 0 chr11 42313160 42313198 -106470274 + AT_rich Low_complexity Low_complexity 1 38 0 201 358 21 11 chr11 42313221 42313316 -106470156 + MIR SINE MIR 17 112 -150 25 31 0 0 chr11 42313458 42313490 -106469982 + AT_rich Low_complexity Low_complexity 1 32 0 2057 121 7 0 chr11 42314489 42314778 -106468694 + AluSq SINE Alu 1 291 -22 2480 54 0 0 chr11 42315898 42316195 -106467277 + AluY SINE Alu 1 297 -14 23 0 0 0 chr11 42316204 42316227 -106467245 + AT_rich Low_complexity Low_complexity 1 23 0 915 120 23 17 chr11 42317792 42317967 -106465505 + CT-rich Low_complexity Low_complexity 3 178 0 274 284 12 0 chr11 42318058 42318139 -106465333 + L2 LINE L2 3228 3309 -4 390 362 83 5 chr11 42318263 42318481 -106464991 - MIR SINE MIR 0 262 28 416 364 101 28 chr11 42318858 42319295 -106464177 + L2 LINE L2 1711 2179 -1135 791 152 23 15 chr11 42319312 42319582 -106463890 + CT-rich Low_complexity Low_complexity 1 272 0 1553 181 30 0 chr11 42319644 42319909 -106463563 + AluJb SINE Alu 1 273 -39 411 21 0 0 chr11 42319913 42319961 -106463511 + (CA)n Simple_repeat Simple_repeat 1 48 0 235 338 202 10 chr11 42319991 42320189 -106463283 + L2 LINE L2 2268 2503 -811 2135 141 13 11 chr11 42320221 42320598 -106462874 - L1MA8 LINE L1 -5 6286 5909 997 188 39 67 chr11 42320602 42320835 -106462637 - MER8 DNA MER2_type 0 239 12 1601 141 8 0 chr11 42320835 42321097 -106462375 - L1MA8 LINE L1 -385 5906 5643 421 393 62 4 chr11 42321099 42321341 -106462131 + L2 LINE L2 2517 2772 -542 2549 30 0 7 chr11 42321345 42321644 -106461828 + AluY SINE Alu 1 297 -14 321 312 8 23 chr11 42321766 42321943 -106461529 + GA-rich Low_complexity Low_complexity 1 174 0 1637 111 9 87 chr11 42321999 42322333 -106461139 + AluY SINE Alu 4 311 0 239 241 58 46 chr11 42322373 42322460 -106461012 + MLT1G1 LTR MaLR 508 595 0 777 282 52 33 chr11 42322528 42323036 -106460436 - L1MEd LINE L1 -3429 3135 2613 2154 118 10 0 chr11 42323036 42323341 -106460131 + AluSg SINE Alu 1 308 -2 777 282 52 33 chr11 42323341 42323406 -106460066 - L1MEd LINE L1 -3951 2613 2551 22 35 0 0 chr11 42323494 42323523 -106459949 + AT_rich Low_complexity Low_complexity 1 29 0 486 304 98 21 chr11 42323784 42324460 -106459012 - L1MEd LINE L1 -4640 2105 1340 262 258 119 20 chr11 42324569 42324720 -106458752 - L1MEd LINE L1 -4956 1089 924 658 161 6 0 chr11 42326414 42326575 -106456897 + (TA)n Simple_repeat Simple_repeat 1 162 0 1867 139 0 29 chr11 42327082 42327392 -106456080 + AluSx SINE Alu 1 301 -11 1117 243 31 7 chr11 42327433 42327721 -106455751 - MLT1A1 LTR MaLR 0 365 71 614 231 37 48 chr11 42327910 42328286 -106455186 - pTR5 LTR ERV1 -1326 1112 741 363 333 8 8 chr11 42328383 42328500 -106454972 + MIR SINE MIR 27 143 -119 412 296 68 0 chr11 42328519 42328651 -106454821 + MLT1G1 LTR MaLR 10 150 -445 343 221 54 67 chr11 42328875 42328993 -106454479 + MLT1H1 LTR MaLR 354 481 -74 2202 85 3 7 chr11 42328993 42329300 -106454172 + AluY SINE Alu 1 306 -5 343 221 54 67 chr11 42329300 42329374 -106454098 + MLT1H1 LTR MaLR 481 554 -1 1925 150 0 17 chr11 42329467 42329761 -106453711 + AluSx SINE Alu 4 292 -20 21 71 0 0 chr11 42329903 42329945 -106453527 + AT_rich Low_complexity Low_complexity 1 42 0 656 259 132 61 chr11 42330194 42330634 -106452838 + MLT1H LTR MaLR 72 542 -7 27 0 0 0 chr11 42330646 42330673 -106452799 + AT_rich Low_complexity Low_complexity 1 27 0 34 0 0 0 chr11 42330845 42330879 -106452593 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr11 42331343 42331370 -106452102 + AT_rich Low_complexity Low_complexity 1 27 0 278 348 133 6 chr11 42333314 42333495 -106449977 - MIR SINE MIR -56 206 3 312 298 0 0 chr11 42333556 42333636 -106449836 + MER5B DNA MER1_type 84 152 -26 24 0 0 0 chr11 42334908 42334932 -106448540 + AT_rich Low_complexity Low_complexity 1 24 0 1440 173 7 7 chr11 42334941 42335230 -106448242 + L1MA4A LINE L1 6010 6298 -5 278 327 24 55 chr11 42335998 42336163 -106447309 + MIR3 SINE MIR 43 202 -6 249 240 10 20 chr11 42337196 42337256 -106446216 + (TA)n Simple_repeat Simple_repeat 2 62 -38 185 0 40 0 chr11 42337256 42337281 -106446191 + (TATAG)n Simple_repeat Simple_repeat 3 28 0 249 240 10 20 chr11 42337281 42337320 -106446152 + (TA)n Simple_repeat Simple_repeat 62 100 0 440 207 0 0 chr11 42337676 42337758 -106445714 - Tigger5 DNA MER2_type 0 2323 2242 353 244 0 0 chr11 42337835 42337913 -106445559 - Tigger5 DNA MER2_type -2244 79 2 2117 70 3 60 chr11 42338425 42338725 -106444747 + AluSg SINE Alu 1 283 -27 2358 66 3 0 chr11 42338791 42339080 -106444392 + AluY SINE Alu 1 290 -21 814 245 99 13 chr11 42339133 42339366 -106444106 - MIR SINE MIR -4 258 6 209 284 111 12 chr11 42339381 42339462 -106444010 - L2 LINE L2 -1000 2314 2226 2040 66 90 14 chr11 42339467 42339756 -106443716 + AluY SINE Alu 1 311 0 29 78 0 0 chr11 42340022 42340086 -106443386 + AT_rich Low_complexity Low_complexity 1 64 0 199 390 50 0 chr11 42340422 42340522 -106442950 - L2 LINE L2 -552 2762 2658 26 30 0 0 chr11 42341882 42341915 -106441557 + AT_rich Low_complexity Low_complexity 1 33 0 186 200 75 0 chr11 42342113 42342153 -106441319 - L2 LINE L2 0 3313 3271 874 236 12 45 chr11 42342258 42342500 -106440972 + L1M3a LINE L1 1 234 -5721 255 173 0 0 chr11 42342611 42342663 -106440809 + CT-rich Low_complexity Low_complexity 1 52 0 1644 265 73 14 chr11 42342667 42343286 -106440186 - L1MC4a LINE L1 0 7808 7154 431 310 109 0 chr11 42343403 42343577 -106439895 - MIR SINE MIR -59 203 11 576 308 30 5 chr11 42343736 42343934 -106439538 + MIR SINE MIR 50 252 -10 2185 117 10 3 chr11 42344203 42344511 -106438961 - AluSg SINE Alu 0 310 1 22 0 0 0 chr11 42344882 42344904 -106438568 + AT_rich Low_complexity Low_complexity 1 22 0 900 182 5 24 chr11 42345926 42346304 -106437168 + G-rich Low_complexity Low_complexity 1 370 0 221 305 104 19 chr11 42346510 42346633 -106436839 + MIR SINE MIR 15 139 -69 1794 218 45 19 chr11 42347245 42347820 -106435652 - MER82 DNA MER2_type 0 653 1 611 145 43 17 chr11 42348746 42348863 -106434609 + MLT2B1 LTR ERVL 401 520 0 245 313 50 12 chr11 42348895 42348975 -106434497 + L2 LINE L2 3096 3178 -94 242 193 160 160 chr11 42349174 42349324 -106434148 + MIR SINE MIR 112 261 -1 414 287 32 70 chr11 42349495 42349526 -106433946 + MIR SINE MIR 4 35 -227 2245 98 0 0 chr11 42349526 42349821 -106433651 + AluY SINE Alu 1 295 -16 414 287 32 70 chr11 42349821 42349946 -106433526 + MIR SINE MIR 35 154 -108 410 165 0 0 chr11 42349954 42350033 -106433439 + L1MA10 LINE L1 6254 6332 -2 236 278 69 14 chr11 42350285 42350357 -106433115 + L2 LINE L2 3195 3270 -2 213 269 0 45 chr11 42350473 42350540 -106432932 + L2 LINE L2 3248 3311 -2 * 236 308 150 8 chr11 42350535 42350668 -106432804 - MIR SINE MIR 0 262 111 339 336 53 34 chr11 42350865 42351073 -106432399 + MIR SINE MIR 38 249 -13 488 329 36 60 chr11 42352509 42352879 -106430593 - L2 LINE L2 -172 3141 2772 252 0 0 0 chr11 42352880 42352908 -106430564 + (T)n Simple_repeat Simple_repeat 1 28 0 307 214 18 42 chr11 42352968 42353136 -106430336 + CT-rich Low_complexity Low_complexity 2 165 0 308 135 19 0 chr11 42353418 42353470 -106430002 - MLT1A1 LTR MaLR -312 53 1 23 33 0 0 chr11 42353709 42353739 -106429733 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr11 42354836 42354886 -106428586 + AT_rich Low_complexity Low_complexity 1 50 0 2010 74 0 0 chr11 42354894 42355179 -106428293 + AluY SINE Alu 39 323 0 16691 148 19 94 chr11 42355700 42359460 -106424012 + L1P LINE L1 12 3487 -2659 6808 70 6 1 chr11 42359460 42360855 -106422617 + L1PA8 LINE L1 4754 6165 -7 23 0 0 0 chr11 42361418 42361441 -106422031 + AT_rich Low_complexity Low_complexity 1 23 0 321 299 51 51 chr11 42361508 42361705 -106421767 + L2 LINE L2 2282 2478 -836 669 203 16 0 chr11 42362978 42363106 -106420366 - Tigger7 DNA MER2_type 0 2487 2358 * 3642 179 17 3 chr11 42363101 42363749 -106419723 - Tigger7 DNA MER2_type -1664 823 167 1860 239 42 2 chr11 42363837 42364357 -106419115 + L1M4 LINE L1 4382 4922 -1224 48 72 0 0 chr11 42364414 42364511 -106418961 + AT_rich Low_complexity Low_complexity 1 97 0 1108 196 31 54 chr11 42364685 42365002 -106418470 - L1MB8 LINE L1 -1 6177 5868 2263 65 41 3 chr11 42365074 42365365 -106418107 - AluY SINE Alu -6 305 4 237 275 174 28 chr11 42366440 42366549 -106416923 - MIR SINE MIR -33 229 105 3686 49 11 0 chr11 42366983 42367449 -106416023 + L1PA4 LINE L1 5683 6153 -2 21 57 0 0 chr11 42367779 42367814 -106415658 + AT_rich Low_complexity Low_complexity 1 35 0 255 170 0 0 chr11 42369586 42369633 -106413839 + (TG)n Simple_repeat Simple_repeat 2 48 0 1305 225 165 20 chr11 42370185 42370499 -106412973 - MSTD LTR MaLR 0 396 26 2489 160 40 5 chr11 42370499 42370944 -106412528 - LOR1b LTR ERV1 0 461 1 1305 225 165 20 chr11 42370944 42370975 -106412497 - MSTD LTR MaLR -370 26 1 1907 87 114 0 chr11 42372123 42372387 -106411085 - AluSq SINE Alu -19 294 1 249 210 0 0 chr11 42372617 42372679 -106410793 + GA-rich Low_complexity Low_complexity 4 65 0 263 229 16 0 chr11 42372880 42372941 -106410531 - MER112 DNA MER1_type -195 65 4 316 307 74 45 chr11 42373318 42373562 -106409910 - MIR SINE MIR 0 262 12 345 346 102 38 chr11 42374847 42375113 -106408359 - L1MB8 LINE L1 -2002 5806 5524 1959 226 106 0 chr11 42375353 42375901 -106407571 - L1MD3 LINE L1 -8 7987 7382 696 328 69 55 chr11 42376381 42377033 -106406439 - L1MB8 LINE L1 -1570 4576 3916 2234 107 0 3 chr11 42377090 42377390 -106406082 - AluSg1 SINE Alu -10 299 1 322 348 87 0 chr11 42377403 42377587 -106405885 - L1MB8 LINE L1 -2338 3808 3609 622 218 135 10 chr11 42377962 42378155 -106405317 + MLT1D LTR MaLR 23 239 -266 750 209 128 19 chr11 42378291 42378544 -106404928 - THE1B LTR MaLR -154 210 1 8669 158 7 38 chr11 42378544 42380092 -106403380 - THE1B-int LTR MaLR 0 1580 82 386 152 0 0 chr11 42380093 42380159 -106403313 - MSTA LTR MaLR -21 407 342 5261 132 27 11 chr11 42380167 42380970 -106402502 - THE1-int LTR MaLR -522 1058 243 2720 62 23 44 chr11 42380971 42381055 -106402417 + THE1B-int LTR MaLR 1202 1286 -294 2351 95 0 3 chr11 42381055 42381359 -106402113 + AluY SINE Alu 1 303 -8 2720 62 23 44 chr11 42381359 42381661 -106401811 + THE1B-int LTR MaLR 1286 1580 0 2041 126 75 31 chr11 42381661 42382010 -106401462 + THE1B LTR MaLR 1 364 0 1286 355 64 10 chr11 42382046 42382652 -106400820 - L2 LINE L2 -433 2881 2243 328 260 55 0 chr11 42382749 42382876 -106400596 + MER103 DNA DNA 14 147 -19 1756 129 16 0 chr11 42383524 42383780 -106399692 + AluSp SINE Alu 39 298 -15 2340 91 7 0 chr11 42384177 42384486 -106398986 - AluY SINE Alu 0 311 1 239 377 8 16 chr11 42384847 42384969 -106398503 + MIR SINE MIR 19 139 -123 619 200 0 0 chr11 42385009 42385114 -106398358 + U6 snRNA snRNA 2 106 -1 1325 224 29 40 chr11 42385126 42385667 -106397805 + L1MA9 LINE L1 2702 3399 -4167 * 2276 211 45 52 chr11 42385657 42386064 -106397408 + L1MA9 LINE L1 6800 7202 -529 189 74 0 0 chr11 42386064 42386091 -106397381 + (CA)n Simple_repeat Simple_repeat 2 28 0 2276 211 45 52 chr11 42386091 42386355 -106397117 + L1MA9 LINE L1 7202 7466 -265 2093 142 19 27 chr11 42386363 42386729 -106396743 - THE1B LTR MaLR -1 363 1 3173 118 2 0 chr11 42386729 42387168 -106396304 - THE1B-int LTR MaLR 0 1580 1141 349 268 0 72 chr11 42387353 42387547 -106395925 + A-rich Low_complexity Low_complexity 1 180 0 348 250 0 22 chr11 42387790 42387882 -106395590 + MIR SINE MIR 173 262 0 3375 151 11 8 chr11 42388634 42389242 -106394230 - L1MA6 LINE L1 0 6300 5691 2092 172 44 26 chr11 42389246 42389380 -106394092 + L1M2 LINE L1 5062 5192 -1108 180 0 0 0 chr11 42389380 42389400 -106394072 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2092 172 44 26 chr11 42389400 42389916 -106393556 + L1M2 LINE L1 5192 5721 -579 292 291 107 0 chr11 42390310 42390413 -106393059 - MIR SINE MIR -73 189 76 2265 91 3 0 chr11 42390492 42390790 -106392682 - AluSp SINE Alu -14 299 1 2286 84 7 0 chr11 42391407 42391715 -106391757 + AluY SINE Alu 2 311 0 767 250 20 10 chr11 42392332 42392536 -106390936 + LTR52 LTR ERVL 175 380 -41 286 177 32 16 chr11 42392673 42392735 -106390737 - HERVL74 LTR ERVL -4407 1278 1216 * 568 268 200 17 chr11 42392720 42392955 -106390517 + HERVL74 LTR ERVL 1720 1997 -3688 7360 33 5 0 chr11 42393435 42394601 -106388871 - L1PA3 LINE L1 -7 6148 4975 180 0 0 0 chr11 42395601 42395621 -106387851 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1930 127 7 0 chr11 42395627 42395902 -106387570 - AluSx SINE Alu -35 277 1 2118 127 0 0 chr11 42396866 42397158 -106386314 + AluSx SINE Alu 3 294 -18 26 0 9 0 chr11 42397158 42397225 -106386247 + AT_rich Low_complexity Low_complexity 1 26 0 2313 196 28 38 chr11 42399671 42400175 -106383297 - MLT1D LTR MaLR 0 505 7 329 282 13 0 chr11 42400277 42400355 -106383117 - MER2 DNA MER2_type 0 345 267 861 224 34 0 chr11 42400383 42400562 -106382910 - MER2 DNA MER2_type -160 185 1 458 312 7 14 chr11 42400786 42400927 -106382545 - MIR SINE MIR -105 157 18 779 327 8 4 chr11 42401596 42401850 -106381622 - MIR SINE MIR 0 262 8 3442 236 93 7 chr11 42402266 42403224 -106380248 + MER45B DNA AcHobo 1 1040 0 195 114 0 0 chr11 42403651 42403686 -106379786 + (TTA)n Simple_repeat Simple_repeat 2 36 0 275 258 161 21 chr11 42403686 42403779 -106379693 - MIR SINE MIR -76 186 81 1046 320 111 70 chr11 42403828 42404505 -106378967 + L2 LINE L2 735 1482 -1832 1796 138 3 24 chr11 42404505 42404803 -106378669 - AluSx SINE Alu -20 292 1 1046 320 111 70 chr11 42404803 42405292 -106378180 + L2 LINE L2 1482 1949 -1365 268 411 8 0 chr11 42405282 42405406 -106378066 + L2 LINE L2 2921 3045 -268 * 737 197 0 0 chr11 42405491 42405643 -106377829 - L1MC3 LINE L1 -8 7777 7626 4336 92 9 2 chr11 42405651 42406334 -106377138 + L1PA10 LINE L1 5182 5868 -300 593 141 20 0 chr11 42406435 42406534 -106376938 + L1PA10 LINE L1 6057 6157 -11 1016 211 137 58 chr11 42406543 42406908 -106376564 - L1MC3 LINE L1 -1628 6157 5800 * 2340 238 88 31 chr11 42406889 42407657 -106375815 - L1MA4A LINE L1 -6 6297 5486 3674 190 45 59 chr11 42407706 42407842 -106375630 - L1MB2 LINE L1 -8 6163 6027 1764 156 13 29 chr11 42407842 42408149 -106375323 + AluSx SINE Alu 2 303 -9 3674 190 45 59 chr11 42408149 42409070 -106374402 - L1MB2 LINE L1 -144 6027 5127 21 71 0 0 chr11 42409073 42409115 -106374357 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr11 42409215 42409246 -106374226 + AT_rich Low_complexity Low_complexity 1 31 0 225 154 0 0 chr11 42410259 42410298 -106373174 + (CATA)n Simple_repeat Simple_repeat 2 40 0 268 381 79 28 chr11 42410394 42410609 -106372863 - MIR SINE MIR -31 231 6 199 186 23 0 chr11 42410701 42410744 -106372728 + L2 LINE L2 3269 3312 -1 1123 223 52 86 chr11 42411400 42411879 -106371593 + MLT1C LTR MaLR 1 463 -4 534 202 0 9 chr11 42413330 42413444 -106370028 - L1MC2 LINE L1 -1 6343 6231 809 201 0 0 chr11 42413483 42413637 -106369835 + FRAM SINE Alu 12 165 -11 722 312 26 21 chr11 42414124 42414454 -106369018 - MLT1G1 LTR MaLR -297 264 1 2233 252 75 68 chr11 42415436 42416712 -106366760 - L1M4c LINE L1 -2081 4301 3013 3342 84 20 0 chr11 42416712 42417154 -106366318 - MLT2A2 LTR ERVL 0 453 3 2233 252 75 68 chr11 42417154 42417232 -106366240 - L1M4c LINE L1 -3369 3013 2937 * 5993 168 6 15 chr11 42417229 42418352 -106365120 + L1PB1 LINE L1 4010 5142 -1009 2097 110 3 28 chr11 42418352 42418671 -106364801 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 42418671 42419373 -106364099 + L1PB1 LINE L1 5142 5815 -336 2464 77 0 0 chr11 42419373 42419684 -106363788 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 42419684 42420017 -106363455 + L1PB1 LINE L1 5815 6149 -2 1427 290 63 15 chr11 42420030 42420899 -106362573 - L1M4c LINE L1 -3435 2947 2041 1070 226 22 0 chr11 42421002 42421228 -106362244 + MLT2B3 LTR ERVL 1 231 -323 250 250 17 0 chr11 42421231 42421291 -106362181 + CT-rich Low_complexity Low_complexity 1 61 0 1116 284 4 4 chr11 42421297 42421547 -106361925 + MLT2B3 LTR ERVL 226 475 -79 9700 233 21 23 chr11 42421547 42421978 -106361494 + L1 LINE L1 2158 2588 -3558 1623 183 9 40 chr11 42421978 42422300 -106361172 - AluJb SINE Alu 0 312 1 9700 233 21 23 chr11 42422300 42424576 -106358896 + L1 LINE L1 2588 4859 -1287 2020 121 7 0 chr11 42424890 42425179 -106358293 + AluSq SINE Alu 1 291 -22 284 342 80 20 chr11 42425520 42425973 -106357499 + L1MEc LINE L1 1275 1754 -4642 21 0 0 0 chr11 42426070 42426091 -106357381 + AT_rich Low_complexity Low_complexity 1 21 0 3207 274 31 7 chr11 42426238 42427458 -106356014 + L1MEc LINE L1 2665 3913 -2302 1917 231 101 18 chr11 42427464 42428009 -106355463 + L1MC3 LINE L1 7097 7686 -99 968 218 34 27 chr11 42428010 42428304 -106355168 - L1M3 LINE L1 -912 5234 4939 * 2274 170 9 24 chr11 42428298 42428768 -106354704 + L1M3 LINE L1 5227 5689 -479 581 311 63 36 chr11 42428807 42429219 -106354253 + L1ME3A LINE L1 3080 3502 -2644 815 261 53 76 chr11 42429247 42429300 -106354172 + L1ME3A LINE L1 5424 5477 -685 2216 97 0 10 chr11 42429300 42429609 -106353863 + AluY SINE Alu 1 306 -5 815 261 53 76 chr11 42429609 42430081 -106353391 + L1ME3A LINE L1 5477 5937 -225 317 337 83 18 chr11 42430180 42430349 -106353123 + L1ME3A LINE L1 5989 6168 -2 2125 99 0 0 chr11 42430513 42430839 -106352633 - AluSx SINE Alu 0 326 1 389 274 94 60 chr11 42431284 42431518 -106351954 - MIR SINE MIR 0 262 21 235 340 19 47 chr11 42432326 42432432 -106351040 + L2 LINE L2 3137 3239 -33 252 0 0 0 chr11 42432440 42432468 -106351004 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2059 113 0 0 chr11 42432849 42433154 -106350318 - AluY SINE Alu 0 305 1 297 0 0 0 chr11 42433656 42433689 -106349783 + (TG)n Simple_repeat Simple_repeat 1 33 0 41 0 0 0 chr11 42433692 42433733 -106349739 + AT_rich Low_complexity Low_complexity 1 41 0 297 0 0 0 chr11 42434342 42434375 -106349097 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr11 42434914 42434937 -106348535 + AT_rich Low_complexity Low_complexity 1 23 0 785 148 13 0 chr11 42435203 42435358 -106348114 + CT-rich Low_complexity Low_complexity 4 160 0 313 22 43 0 chr11 42435360 42435406 -106348066 + (GA)n Simple_repeat Simple_repeat 1 48 0 1090 47 0 0 chr11 42435406 42435534 -106347938 - AluY SINE Alu -183 128 1 21 57 0 0 chr11 42436008 42436043 -106347429 + AT_rich Low_complexity Low_complexity 1 35 0 210 262 84 28 chr11 42436066 42436173 -106347299 - MIR SINE MIR -99 163 51 303 271 96 43 chr11 42436386 42436574 -106346898 + L2 LINE L2 3115 3312 -1 1192 206 101 14 chr11 42436590 42436876 -106346596 + MLT1A2 LTR MaLR 14 324 -50 796 91 51 23 chr11 42436917 42437092 -106346380 + GA-rich Low_complexity Low_complexity 1 180 0 227 86 29 0 chr11 42437094 42437129 -106346343 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 301 305 99 73 chr11 42437180 42437524 -106345948 + L1ME4a LINE L1 5467 5819 -302 22 56 0 0 chr11 42437711 42437747 -106345725 + AT_rich Low_complexity Low_complexity 1 36 0 437 290 97 0 chr11 42438627 42438844 -106344628 + MER44D DNA MER2_type 1 508 -101 1310 157 121 49 chr11 42439078 42439384 -106344088 - L1MA5A LINE L1 -5 6292 5965 615 184 0 0 chr11 42439386 42439484 -106343988 + MER44D DNA MER2_type 512 609 0 291 167 60 12 chr11 42439560 42439644 -106343828 + L1ME4a LINE L1 5991 6078 -43 198 0 0 0 chr11 42441083 42441105 -106342367 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr11 42442330 42442353 -106341119 + AT_rich Low_complexity Low_complexity 1 23 0 216 111 0 0 chr11 42442433 42442469 -106341003 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 240 21 31 chr11 42442962 42443058 -106340414 + T-rich Low_complexity Low_complexity 1 95 0 1834 166 135 5 chr11 42443470 42443849 -106339623 - MSTA LTR MaLR 0 428 1 1448 206 52 0 chr11 42443976 42444262 -106339210 + MLT1C LTR MaLR 7 307 -160 736 255 16 5 chr11 42444593 42444777 -106338695 - MLT1D LTR MaLR -2 503 318 35 24 0 0 chr11 42444791 42444833 -106338639 + AT_rich Low_complexity Low_complexity 1 42 0 2409 194 11 19 chr11 42444892 42445429 -106338043 - L1MA4 LINE L1 -14 6286 5754 649 239 34 91 chr11 42445432 42445626 -106337846 - MLT1D LTR MaLR -170 297 117 1776 163 48 0 chr11 42445626 42445915 -106337557 + AluSx SINE Alu 1 303 -9 649 239 34 91 chr11 42445915 42446022 -106337450 - MLT1D LTR MaLR -350 117 5 308 152 29 48 chr11 42446031 42446136 -106337336 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 336 267 76 12 chr11 42446142 42446314 -106337158 + L1ME4a LINE L1 5936 6118 -3 2193 55 21 41 chr11 42446316 42446629 -106336843 + AluY SINE Alu 1 307 0 22 0 0 0 chr11 42447075 42447097 -106336375 + AT_rich Low_complexity Low_complexity 1 22 0 2190 213 14 27 chr11 42448594 42449111 -106334361 - MER67D LTR ERV1 0 514 5 2290 88 3 7 chr11 42449337 42449643 -106333829 - AluSc SINE Alu -4 305 1 1253 123 20 113 chr11 42449841 42450117 -106333355 - pTR5 LTR ERV1 -2039 399 17 5499 118 129 128 chr11 42450217 42451622 -106331850 + pTR5 LTR ERV1 1032 2438 0 3169 121 14 6 chr11 42451631 42452129 -106331343 + L1P LINE L1 2500 3001 -3145 2093 136 3 0 chr11 42452186 42452487 -106330985 - AluSx SINE Alu -10 302 1 22 80 0 0 chr11 42453298 42453348 -106330124 + AT_rich Low_complexity Low_complexity 1 50 0 2539 60 0 0 chr11 42453428 42453730 -106329742 + AluY SINE Alu 1 302 -9 342 231 0 0 chr11 42453736 42453827 -106329645 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 1530 199 13 10 chr11 42453972 42454273 -106329199 - AluJo SINE Alu -10 302 1 305 369 38 6 chr11 42454446 42454603 -106328869 + MIR SINE MIR 1 162 -100 295 316 129 7 chr11 42454599 42454754 -106328718 + MIR SINE MIR 70 243 -19 * 1581 178 32 11 chr11 42454755 42455036 -106328436 - AluJb SINE Alu -20 292 6 1500 151 70 91 chr11 42455447 42455830 -106327642 - THE1C LTR MaLR 0 375 1 2087 123 3 0 chr11 42457419 42457712 -106325760 + AluSg SINE Alu 1 294 -16 24 53 0 0 chr11 42457912 42457950 -106325522 + AT_rich Low_complexity Low_complexity 1 38 0 216 232 126 105 chr11 42458165 42458260 -106325212 + MIR3 SINE MIR 10 106 -102 1252 135 54 162 chr11 42458607 42458825 -106324647 - AluJb SINE Alu -4 298 127 423 119 0 0 chr11 42458825 42458892 -106324580 + (TG)n Simple_repeat Simple_repeat 2 68 0 1252 135 54 162 chr11 42458892 42459006 -106324466 - AluJb SINE Alu -175 127 2 1456 206 27 20 chr11 42459316 42459608 -106323864 + AluJo SINE Alu 1 294 -18 442 231 62 98 chr11 42459642 42459867 -106323605 + MLT1J LTR MaLR 244 460 -51 216 332 71 36 chr11 42460180 42460376 -106323096 + MIR SINE MIR 47 249 -13 187 150 0 50 chr11 42460433 42460473 -106322999 + MIR SINE MIR 112 149 -113 3007 176 59 20 chr11 42460482 42461129 -106322343 - L1MB1 LINE L1 -9 6180 5509 1430 221 120 2 chr11 42461103 42461520 -106321952 - L1MB1 LINE L1 -1175 4971 4506 * 1192 146 31 26 chr11 42461520 42461746 -106321726 + MER50 LTR ERV1 1 227 -507 1476 189 8 4 chr11 42461750 42462015 -106321457 + MER50 LTR ERV1 432 697 -37 3298 229 98 36 chr11 42462036 42463118 -106320354 - L1MB1 LINE L1 -1637 4509 3361 4370 202 21 20 chr11 42463218 42464223 -106319249 + L1 LINE L1 3381 4386 -1760 3424 128 82 0 chr11 42464234 42464821 -106318651 + L1MA3 LINE L1 5664 6298 -7 2062 115 7 0 chr11 42464859 42465158 -106318314 + AluSg SINE Alu 1 301 0 2390 64 3 3 chr11 42465444 42465739 -106317733 - AluY SINE Alu -16 295 1 583 210 17 0 chr11 42465740 42465859 -106317613 + Tigger7 DNA MER2_type 2360 2480 -7 22 0 0 0 chr11 42465892 42465914 -106317558 + AT_rich Low_complexity Low_complexity 1 22 0 1715 133 0 33 chr11 42465921 42466191 -106317281 + AluSx SINE Alu 1 261 -51 1676 233 32 2 chr11 42466282 42466694 -106316778 - L1PB4 LINE L1 -3 6153 5730 542 259 126 96 chr11 42467181 42467552 -106315920 + MLT1H1 LTR MaLR 1 394 -161 2365 91 3 0 chr11 42467552 42467859 -106315613 - AluY SINE Alu -3 308 1 542 259 126 96 chr11 42467859 42468019 -106315453 + MLT1H1 LTR MaLR 394 548 -7 21 0 0 0 chr11 42468106 42468127 -106315345 + AT_rich Low_complexity Low_complexity 1 21 0 2508 60 0 0 chr11 42468414 42468714 -106314758 + AluY SINE Alu 1 300 -11 1007 189 17 0 chr11 42468765 42468945 -106314527 + AluJo SINE Alu 1 183 -129 23 33 0 0 chr11 42472053 42472083 -106311389 + AT_rich Low_complexity Low_complexity 1 30 0 6587 73 14 7 chr11 42472888 42474373 -106309099 - L1PA7 LINE L1 -2 6152 4661 200 33 0 33 chr11 42474392 42474422 -106309050 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1853 56 0 0 chr11 42474425 42474658 -106308814 - L1PA5 LINE L1 -3 6151 5919 1504 34 0 0 chr11 42474659 42474837 -106308635 + L1PA5 LINE L1 5717 5894 -260 * 10600 108 1 18 chr11 42474834 42475829 -106307643 - L1PA7 LINE L1 -1470 4676 3717 2323 95 0 22 chr11 42475829 42476145 -106307327 - AluY SINE Alu 0 311 3 10600 108 1 18 chr11 42476145 42476768 -106306704 - L1PA7 LINE L1 -2429 3717 3085 2393 90 0 6 chr11 42477014 42477325 -106306147 - AluY SINE Alu -2 309 1 209 176 0 0 chr11 42477519 42477553 -106305919 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1142 157 30 0 chr11 42477661 42477858 -106305614 + MLT2B1 LTR ERVL 1 203 -317 263 196 0 0 chr11 42477915 42477961 -106305511 + MLT2B2 LTR ERVL 470 515 0 25 65 0 0 chr11 42478092 42478138 -106305334 + AT_rich Low_complexity Low_complexity 1 46 0 559 314 11 17 chr11 42478216 42478391 -106305081 + MLT1J1 LTR MaLR 37 210 -236 25 31 0 0 chr11 42478723 42478755 -106304717 + AT_rich Low_complexity Low_complexity 1 32 0 1318 205 55 0 chr11 42479575 42479829 -106303643 + AluJo SINE Alu 13 280 -32 189 200 0 50 chr11 42479831 42479911 -106303561 + GA-rich Low_complexity Low_complexity 4 79 0 208 240 0 0 chr11 42481621 42481671 -106301801 + T-rich Low_complexity Low_complexity 3 52 0 2524 59 3 0 chr11 42481764 42482069 -106301403 + AluY SINE Alu 4 309 -2 396 184 15 140 chr11 42482225 42482361 -106301111 + LTR12 LTR ERV1 239 357 -357 639 267 24 19 chr11 42482777 42483038 -106300434 + LTR40a LTR ERVL 84 427 -35 1153 120 23 0 chr11 42483505 42483680 -106299792 + LOR1a-int LTR ERV1 5886 6064 -2056 572 136 0 0 chr11 42483679 42483760 -106299712 + LOR1a-int LTR ERV1 8030 8110 -10 * 2443 88 0 0 chr11 42483808 42484116 -106299356 - AluY SINE Alu -3 308 1 1845 205 11 55 chr11 42484134 42484382 -106299090 + LOR1a LTR ERV1 60 280 -217 1853 154 0 10 chr11 42484382 42484674 -106298798 - AluSx SINE Alu -2 310 22 1845 205 11 55 chr11 42484674 42484883 -106298589 + LOR1a LTR ERV1 280 497 0 244 313 0 0 chr11 42485352 42485416 -106298056 + L2 LINE L2 3209 3272 0 240 218 0 36 chr11 42486430 42486486 -106296986 - MIR SINE MIR -62 146 98 11236 151 18 2 chr11 42487620 42489368 -106294104 - HERVL18 LTR ERVL -2268 3779 2004 567 370 76 23 chr11 42489414 42489648 -106293824 - L1M3c LINE L1 -5716 425 160 2387 82 7 0 chr11 42489648 42489951 -106293521 - AluY SINE Alu -6 305 1 567 370 76 23 chr11 42489951 42490113 -106293359 - L1M3c LINE L1 -5981 160 8 215 30 0 30 chr11 42490391 42490424 -106293048 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 264 383 8 0 chr11 42490616 42490736 -106292736 + L2 LINE L2 3186 3306 -7 740 305 12 9 chr11 42491986 42492233 -106291239 + MIR SINE MIR 17 262 0 21 82 0 0 chr11 42492251 42492300 -106291172 + AT_rich Low_complexity Low_complexity 1 49 0 1151 250 110 5 chr11 42492549 42492947 -106290525 + MLT1E1 LTR MaLR 3 529 -125 2211 76 21 0 chr11 42492947 42493258 -106290214 + AluSc SINE Alu 1 309 0 1151 250 110 5 chr11 42493258 42493371 -106290101 + MLT1E1 LTR MaLR 529 629 -25 2532 64 0 3 chr11 42493371 42493683 -106289789 + AluY SINE Alu 1 311 0 306 0 0 0 chr11 42493872 42493906 -106289566 + (TA)n Simple_repeat Simple_repeat 2 35 0 2119 113 3 3 chr11 42493980 42494289 -106289183 + AluSc SINE Alu 1 309 0 1866 103 0 70 chr11 42495123 42495424 -106288048 + AluSg SINE Alu 31 310 0 2267 86 6 16 chr11 42495827 42496141 -106287331 + AluY SINE Alu 1 311 0 2056 126 0 3 chr11 42496236 42496573 -106286899 - AluSq SINE Alu 0 336 1 836 235 15 66 chr11 42496574 42496846 -106286626 - L1MD2 LINE L1 -29 6330 6073 2348 256 43 6 chr11 42496862 42497789 -106285683 - L1MD2 LINE L1 -352 6007 5047 1437 257 52 28 chr11 42497787 42498320 -106285152 + L1M4 LINE L1 3985 4530 -1616 * 1832 100 0 8 chr11 42498320 42498561 -106284911 - AluSc SINE Alu -68 241 3 1118 264 50 9 chr11 42498565 42499008 -106284464 + L1M4 LINE L1 4582 5042 -1104 819 263 60 27 chr11 42499496 42499797 -106283675 + MLT1E LTR MaLR 283 593 0 1619 100 168 0 chr11 42500110 42500242 -106283230 - AluSg1 SINE Alu -17 292 184 309 26 0 0 chr11 42500242 42500280 -106283192 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1619 100 168 0 chr11 42500280 42500397 -106283075 - AluSg1 SINE Alu -125 184 1 1450 191 123 11 chr11 42501710 42502061 -106281411 - MLT1B LTR MaLR 0 390 1 267 54 0 0 chr11 42502575 42502612 -106280860 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 315 277 54 9 chr11 42502628 42502740 -106280732 - L1MB8 LINE L1 -5 6173 6057 6310 252 67 13 chr11 42502748 42505297 -106278175 - L1MB8 LINE L1 -311 5873 3130 2065 113 3 11 chr11 42505297 42505619 -106277853 + AluY SINE Alu 1 320 0 6310 252 67 13 chr11 42505619 42506080 -106277392 - L1MB8 LINE L1 -3054 3130 2695 421 277 0 0 chr11 42506084 42506203 -106277269 - L1MB8 LINE L1 -3559 2587 2469 5196 169 46 6 chr11 42506214 42507236 -106276236 - L1MC1 LINE L1 0 6333 5271 4185 168 46 26 chr11 42507354 42507542 -106275930 - L1 LINE L1 -3323 4242 4059 2269 92 3 3 chr11 42507542 42507834 -106275638 + AluY SINE Alu 1 292 -19 4185 168 46 26 chr11 42507834 42508172 -106275300 - L1 LINE L1 -3506 4059 3729 2361 91 0 7 chr11 42508172 42508480 -106274992 - AluY SINE Alu -5 306 1 4185 168 46 26 chr11 42508480 42509344 -106274128 - L1 LINE L1 -3836 3729 2826 42 20 0 0 chr11 42509436 42509485 -106273987 + AT_rich Low_complexity Low_complexity 1 49 0 180 0 0 0 chr11 42509506 42509526 -106273946 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 182 319 97 69 chr11 42510809 42510953 -106272519 - L2 LINE L2 -1150 2164 2017 274 316 20 0 chr11 42510963 42511061 -106272411 - LTR67 LTR ERVL -10 547 448 194 361 92 66 chr11 42511276 42511553 -106271919 - L2 LINE L2 -1391 1923 1655 2650 10 3 3 chr11 42511553 42511849 -106271623 + AluYa5 SINE Alu 1 296 -15 194 361 92 66 chr11 42511849 42511903 -106271569 - L2 LINE L2 -1659 1655 1604 1949 147 3 0 chr11 42511903 42512196 -106271276 + AluSx SINE Alu 7 300 -12 194 361 92 66 chr11 42512196 42512218 -106271254 - L2 LINE L2 -1710 1604 1584 2428 68 0 13 chr11 42512218 42512525 -106270947 + AluY SINE Alu 1 303 -8 194 361 92 66 chr11 42512525 42512618 -106270854 - L2 LINE L2 -1730 1584 1495 1917 161 122 8 chr11 42512618 42513002 -106270470 - MSTA LTR MaLR 0 428 1 194 361 92 66 chr11 42513002 42513267 -106270205 - L2 LINE L2 -1819 1495 1190 216 343 72 84 chr11 42513271 42513639 -106269833 - L2 LINE L2 -2260 1054 683 1815 193 50 21 chr11 42513639 42514059 -106269413 + MSTB1 LTR MaLR 1 432 0 216 343 72 84 chr11 42514059 42514527 -106268945 - L2 LINE L2 -2631 683 228 533 351 4 13 chr11 42514708 42514947 -106268525 - LTR16B LTR ERVL -25 439 203 224 373 107 41 chr11 42515334 42515728 -106267744 + L3 LINE CR1 459 878 -699 191 296 8 96 chr11 42515730 42515855 -106267617 + L3 LINE CR1 1042 1155 -422 275 330 21 0 chr11 42515942 42516039 -106267433 + L2 LINE L2 2877 2975 -338 1054 261 68 9 chr11 42516107 42516433 -106267039 - MER87 LTR ERV1 0 541 197 2317 116 52 0 chr11 42517280 42517626 -106265846 + THE1B LTR MaLR 1 364 0 9822 131 19 40 chr11 42517626 42518942 -106264530 + THE1B-int LTR MaLR 1 1278 -302 2171 107 0 26 chr11 42518942 42519251 -106264221 + AluY SINE Alu 1 301 -10 9822 131 19 40 chr11 42519251 42519542 -106263930 + THE1B-int LTR MaLR 1278 1574 -6 2146 140 37 3 chr11 42519547 42519897 -106263575 + THE1B LTR MaLR 1 362 -2 3564 176 41 59 chr11 42519936 42520610 -106262862 - MER49 LTR ERV1 -163 760 100 1827 181 0 10 chr11 42520610 42520924 -106262548 - AluSx SINE Alu 0 312 2 3564 176 41 59 chr11 42520924 42521023 -106262449 - MER49 LTR ERV1 -823 100 1 1160 195 142 32 chr11 42521023 42521305 -106262167 - MER49-int LTR ERV1 -1 7093 6445 932 208 35 30 chr11 42521306 42521503 -106261969 - MER49-int LTR ERV1 -622 6136 5939 477 206 37 47 chr11 42521503 42521675 -106261797 - MER87-int LTR ERV1 -1307 4891 3635 904 144 5 96 chr11 42521801 42521988 -106261484 - MER87-int LTR ERV1 -4165 3955 3786 5476 196 52 67 chr11 42522106 42523283 -106260189 - MER87-int LTR ERV1 -2148 4183 2990 2550 68 0 0 chr11 42523283 42523594 -106259878 - AluY SINE Alu 0 311 1 5476 196 52 67 chr11 42523594 42524739 -106258733 - MER87-int LTR ERV1 -3341 2990 686 5350 168 59 42 chr11 42523825 42525090 -106258382 - LTR57-int LTR ERVL -3754 1589 303 * 642 242 21 31 chr11 42525254 42525448 -106258024 - MER87-int LTR ERV1 -1408 378 187 1203 270 72 31 chr11 42525606 42526050 -106257422 - MER87 LTR ERV1 0 541 80 197 368 0 0 chr11 42526236 42526312 -106257160 + L2 LINE L2 2886 2961 -353 237 321 0 24 chr11 42526436 42526520 -106256952 + L2 LINE L2 3189 3270 -2 280 261 0 0 chr11 42526838 42526907 -106256565 + HsTC2 DNA Tc2 31 99 -1799 544 286 68 23 chr11 42527084 42527437 -106256035 + HsTC2 DNA Tc2 1529 1897 -1 727 271 99 52 chr11 42527560 42528006 -106255466 + MLT1C LTR MaLR 1 467 0 1105 233 105 7 chr11 42528036 42528341 -106255131 - MLT1C LTR MaLR -132 335 1 1711 196 19 35 chr11 42530114 42530481 -106252991 + MLT1A1 LTR MaLR 1 361 -4 255 346 85 0 chr11 42530507 42530637 -106252835 + L3 LINE CR1 1282 1422 -155 2160 120 3 0 chr11 42530804 42531104 -106252368 + AluSq SINE Alu 3 303 -10 393 241 73 84 chr11 42531256 42531517 -106251955 + MLT1K LTR MaLR 315 572 -16 22 35 0 0 chr11 42532048 42532077 -106251395 + AT_rich Low_complexity Low_complexity 1 29 0 39 0 0 0 chr11 42532176 42532215 -106251257 + AT_rich Low_complexity Low_complexity 1 39 0 1832 124 40 30 chr11 42532216 42532428 -106251044 + AluY SINE Alu 1 218 -93 5042 73 64 116 chr11 42532428 42533299 -106250173 - LTR12 LTR ERV1 0 826 1 1832 124 40 30 chr11 42533299 42533385 -106250087 + AluY SINE Alu 218 302 -9 280 338 83 0 chr11 42533418 42533563 -106249909 + MIR SINE MIR 91 247 -15 23 0 0 0 chr11 42533671 42533694 -106249778 + AT_rich Low_complexity Low_complexity 1 23 0 233 318 8 83 chr11 42533768 42533900 -106249572 - MIR SINE MIR -71 137 16 1406 195 49 42 chr11 42534256 42534543 -106248929 - AluJb SINE Alu -23 289 1 781 262 8 4 chr11 42536288 42536551 -106246921 - L1M4 LINE L1 -940 6017 5754 268 243 9 37 chr11 42536552 42536659 -106246813 - L1M4 LINE L1 -4766 2193 2090 1104 274 60 33 chr11 42536672 42537040 -106246432 - L1M4 LINE L1 -6372 487 110 257 208 13 0 chr11 42537078 42537155 -106246317 + (TA)n Simple_repeat Simple_repeat 1 78 0 258 192 0 0 chr11 42537229 42537281 -106246191 + (TA)n Simple_repeat Simple_repeat 2 53 0 1360 234 103 37 chr11 42537426 42537989 -106245483 - LTR48B LTR ERV1 -44 600 1 23 33 0 0 chr11 42538058 42538088 -106245384 + AT_rich Low_complexity Low_complexity 1 30 0 1773 87 19 41 chr11 42538536 42538802 -106244670 + AluSq SINE Alu 1 260 -53 1539 275 56 8 chr11 42538906 42539496 -106243976 - L1 LINE L1 -2978 3168 2551 2049 168 56 3 chr11 42539497 42539836 -106243636 - LTR18A LTR ERVL 0 357 1 12740 166 15 1 chr11 42539837 42541868 -106241604 - HERVL18 LTR ERVL 0 6047 3987 2028 130 3 0 chr11 42542466 42542779 -106240693 - AluSx SINE Alu 0 314 1 667 166 60 26 chr11 42542786 42542937 -106240535 - LTR54B LTR ERV1 -342 156 1 24 0 0 0 chr11 42544815 42544839 -106238633 + AT_rich Low_complexity Low_complexity 1 24 0 204 188 94 8 chr11 42545295 42545412 -106238060 + (CACAA)n Simple_repeat Simple_repeat 1 127 0 206 118 0 0 chr11 42546202 42546236 -106237236 + (T)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr11 42547028 42547063 -106236409 + AT_rich Low_complexity Low_complexity 1 35 0 366 80 0 0 chr11 42547549 42547599 -106235873 + (CA)n Simple_repeat Simple_repeat 1 50 0 1745 141 131 39 chr11 42549385 42549774 -106233698 - MSTA LTR MaLR -3 425 1 26 0 0 0 chr11 42549856 42549882 -106233590 + AT_rich Low_complexity Low_complexity 1 26 0 1860 160 58 50 chr11 42550206 42550606 -106232866 + MER57A LTR ERV1 1 403 0 26 30 0 0 chr11 42551476 42551509 -106231963 + AT_rich Low_complexity Low_complexity 1 33 0 7082 46 7 0 chr11 42551541 42552849 -106230623 - L1PA5 LINE L1 -8 6146 4841 9404 42 1 0 chr11 42552850 42554003 -106229469 + L1PA5 LINE L1 3704 4857 -1289 1250 97 0 0 chr11 42554003 42554168 -106229304 - AluSg/x SINE Alu -11 301 137 1699 123 0 54 chr11 42554898 42555174 -106228298 - AluY SINE Alu -20 291 31 4758 110 249 71 chr11 42555177 42556505 -106226967 - pTR5 LTR ERV1 0 2438 743 1918 124 22 0 chr11 42556759 42557075 -106226397 - AluSc SINE Alu 0 322 1 308 269 39 9 chr11 42557711 42557821 -106225651 + MIR SINE MIR 48 161 -71 1925 152 0 19 chr11 42558106 42558422 -106225050 - AluSx SINE Alu -2 310 1 823 254 91 13 chr11 42558520 42558827 -106224645 + Zaphod DNA AcHobo 404 734 -3297 1864 223 148 20 chr11 42558847 42559551 -106223921 + Zaphod DNA AcHobo 2409 3202 -829 3532 182 48 25 chr11 42559608 42560401 -106223071 - L1MB3 LINE L1 -4 6179 5369 336 197 0 28 chr11 42560919 42560990 -106222482 - LTR28 LTR ERV1 -4 1016 948 663 226 33 60 chr11 42561127 42561414 -106222058 - LTR1 LTR ERV1 -558 227 1 2665 193 10 2 chr11 42562477 42562970 -106220502 - LOR1a LTR ERV1 0 497 1 2071 108 0 41 chr11 42563177 42563472 -106220000 + AluSg SINE Alu 6 288 -22 417 228 89 51 chr11 42563583 42563741 -106219731 - LTR40c LTR ERVL -107 358 195 228 266 143 98 chr11 42564198 42564401 -106219071 - MIR SINE MIR -16 246 35 186 167 0 0 chr11 42565515 42565551 -106217921 + A-rich Low_complexity Low_complexity 5 40 0 342 254 40 40 chr11 42565641 42565767 -106217705 - MIR SINE MIR 0 262 137 804 114 23 0 chr11 42565801 42565932 -106217540 - L1MA5A LINE L1 -4 6293 6160 2407 210 35 8 chr11 42566369 42566879 -106216593 - MER34 LTR ERV1 -18 524 1 204 40 0 0 chr11 42567301 42567326 -106216146 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 1503 199 7 7 chr11 42567380 42567667 -106215805 - AluJo SINE Alu -23 289 3 347 241 138 40 chr11 42568058 42568227 -106215245 - MER33 DNA MER1_type -2265 320 116 2330 85 0 3 chr11 42568227 42568532 -106214940 - AluY SINE Alu -7 304 1 347 241 138 40 chr11 42568532 42568615 -106214857 - MER33 DNA MER1_type -2469 116 43 5782 94 21 13 chr11 42568785 42569439 -106214033 - L1PA13 LINE L1 -3 6160 5513 345 24 0 0 chr11 42569439 42569481 -106213991 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2353 60 0 11 chr11 42569481 42569766 -106213706 - AluY SINE Alu -29 282 1 5782 94 21 13 chr11 42569766 42569778 -106213694 - L1PA13 LINE L1 -650 5513 5503 2372 100 0 0 chr11 42569778 42570077 -106213395 - AluY SINE Alu -10 301 3 5782 94 21 13 chr11 42570077 42571198 -106212274 - L1PA13 LINE L1 -660 5503 4352 198 0 0 0 chr11 42571206 42571228 -106212244 + (TTA)n Simple_repeat Simple_repeat 3 24 0 34448 40 4 2 chr11 42571228 42576271 -106207201 - L1PA4 LINE L1 -18 6137 1085 1512 149 0 4 chr11 42576269 42576517 -106206955 - L1PA13 LINE L1 -1813 4333 4087 * 7356 79 3 2 chr11 42676518 42677555 -106105917 + L1P LINE L1 3281 4318 -1828 199 244 0 22 chr11 42678010 42678055 -106105417 - MIR SINE MIR -8 254 211 * 207 286 0 0 chr11 42678024 42678066 -106105406 - L2 LINE L2 -27 3286 3245 35 54 0 0 chr11 42678168 42678224 -106105248 + AT_rich Low_complexity Low_complexity 1 56 0 190 338 54 14 chr11 42678361 42678435 -106105037 - L2 LINE L2 -40 3232 3156 337 259 56 9 chr11 42678645 42678753 -106104719 - MIR SINE MIR 0 262 150 1162 67 0 0 chr11 42678885 42679020 -106104452 - AluY SINE Alu -176 135 1 307 227 45 4 chr11 42679285 42679400 -106104072 + MIR SINE MIR 99 256 -6 190 330 19 48 chr11 42679589 42679692 -106103780 - L2 LINE L2 -14 3258 3159 226 343 55 0 chr11 42679822 42679895 -106103577 + L2 LINE L2 3196 3272 0 2258 198 54 9 chr11 42680118 42680149 -106103323 - L1MA8 LINE L1 -209 6082 6054 1894 173 0 3 chr11 42680149 42680449 -106103023 - AluSx SINE Alu -13 299 1 2258 198 54 9 chr11 42680449 42680957 -106102515 - L1MA8 LINE L1 -237 6054 5519 1848 137 0 0 chr11 42680959 42681222 -106102250 - AluSg SINE Alu -9 301 39 412 377 108 34 chr11 42682050 42682429 -106101043 + L2 LINE L2 2839 3245 -27 2374 76 0 3 chr11 42683002 42683306 -106100166 + AluY SINE Alu 1 303 -8 24 0 0 0 chr11 42683664 42683688 -106099784 + AT_rich Low_complexity Low_complexity 1 24 0 2446 82 0 3 chr11 42684665 42684971 -106098501 + AluY SINE Alu 5 309 -2 559 312 5 11 chr11 42685040 42685226 -106098246 - MLT2E LTR ERVL 0 628 444 213 344 8 55 chr11 42685457 42685585 -106097887 - L2 LINE L2 -1 3271 3150 387 0 0 0 chr11 42686958 42687001 -106096471 + (CA)n Simple_repeat Simple_repeat 2 44 0 314 280 178 13 chr11 42687189 42687346 -106096126 - HAL1b LINE L1 -13 1335 1153 398 279 40 33 chr11 42687348 42687798 -106095674 - HAL1b LINE L1 -228 1120 571 2287 244 132 65 chr11 42687830 42688871 -106094601 + LTR28 LTR ERV1 1 1755 0 2709 195 28 4 chr11 42688920 42689428 -106094044 + MLT2B1 LTR ERVL 1 520 0 2397 110 0 0 chr11 42689601 42689909 -106093563 - AluSx SINE Alu -4 308 1 2198 106 0 7 chr11 42689924 42690227 -106093245 - AluY SINE Alu -10 301 1 5024 146 29 22 chr11 42691634 42692531 -106090941 + MER4D LTR ERV1 1 903 0 192 274 0 20 chr11 42692531 42692576 -106090896 - L2 LINE L2 -8 3264 3221 532 313 79 29 chr11 42693039 42693279 -106090193 - MIR SINE MIR -3 259 8 226 355 26 52 chr11 42694113 42694268 -106089204 - MIR SINE MIR -106 156 6 1402 193 40 20 chr11 42694273 42694573 -106088899 - AluJo SINE Alu -6 306 1 886 258 35 5 chr11 42694644 42694842 -106088630 + MLT2B3 LTR ERVL 313 516 -38 270 117 39 52 chr11 42694842 42694919 -106088553 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 324 145 0 43 chr11 42694921 42694990 -106088482 + MLT2B1 LTR ERVL 455 520 0 * 1303 261 73 34 chr11 42694990 42695414 -106088058 + MLT1F LTR MaLR 102 542 0 180 0 0 0 chr11 42695644 42695664 -106087808 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 25 0 0 0 chr11 42696046 42696071 -106087401 + AT_rich Low_complexity Low_complexity 1 25 0 1205 280 133 64 chr11 42696076 42696519 -106086953 + MLT1G1 LTR MaLR 1 436 -106 21 0 0 0 chr11 42696699 42696720 -106086752 + AT_rich Low_complexity Low_complexity 1 21 0 245 136 23 0 chr11 42696836 42696880 -106086592 + MLT1G1 LTR MaLR 546 590 0 195 361 28 0 chr11 42696983 42697055 -106086417 + MIR SINE MIR 39 112 -150 557 28 14 0 chr11 42697155 42697226 -106086246 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 267 195 12 37 chr11 42697228 42697310 -106086162 + Charlie8 DNA MER1_type 87 166 -2251 22 0 0 0 chr11 42697480 42697502 -106085970 + AT_rich Low_complexity Low_complexity 1 22 0 208 121 0 0 chr11 42697547 42697580 -106085892 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 571 250 117 32 chr11 42697805 42697993 -106085479 + MER3 DNA MER1_type 5 208 -1 285 354 97 7 chr11 42698233 42698377 -106085095 - MIR3 SINE MIR -16 192 36 317 355 60 30 chr11 42699274 42699440 -106084032 + L2 LINE L2 3096 3266 -6 29 90 0 0 chr11 42700414 42700492 -106082980 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr11 42700714 42700736 -106082736 + AT_rich Low_complexity Low_complexity 1 22 0 291 281 20 84 chr11 42700949 42700997 -106082475 - LTR67 LTR ERVL -2 555 505 1399 197 16 89 chr11 42700997 42701089 -106082383 - MER61A LTR ERV1 0 343 246 2396 57 0 44 chr11 42701089 42701406 -106082066 + AluY SINE Alu 2 304 -7 1399 197 16 89 chr11 42701406 42701683 -106081789 - MER61A LTR ERV1 -97 246 1 291 281 20 84 chr11 42701683 42701837 -106081635 - LTR67 LTR ERVL -52 505 366 234 250 16 0 chr11 42701991 42702055 -106081417 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr11 42703024 42703061 -106080411 + AT_rich Low_complexity Low_complexity 1 37 0 185 159 23 0 chr11 42703981 42704025 -106079447 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 215 250 54 18 chr11 42704142 42704198 -106079274 - L2 LINE L2 -5 3267 3210 346 246 43 51 chr11 42704293 42704431 -106079041 - LTR27 LTR ERV1 -2 634 498 2072 211 31 23 chr11 42704525 42705119 -106078353 - LTR27 LTR ERV1 -141 495 3 1670 157 34 11 chr11 42705119 42705603 -106077869 - LTR27-int LTR ERV1 0 6995 3796 2209 105 13 0 chr11 42707046 42707350 -106076122 + AluSp SINE Alu 1 308 -5 29 0 0 0 chr11 42707350 42707379 -106076093 + AT_rich Low_complexity Low_complexity 1 29 0 1692 220 53 12 chr11 42708475 42708889 -106074583 + MLT1C LTR MaLR 34 464 -3 312 132 42 16 chr11 42708914 42709035 -106074437 + CT-rich Low_complexity Low_complexity 1 124 0 35 41 0 0 chr11 42709195 42709244 -106074228 + AT_rich Low_complexity Low_complexity 1 49 0 1693 178 3 17 chr11 42709710 42710008 -106073464 - AluJb SINE Alu -18 294 1 261 252 197 27 chr11 42710034 42710181 -106073291 - MIR SINE MIR -51 211 40 423 269 90 0 chr11 42710864 42710998 -106072474 + MIR SINE MIR 70 215 -47 289 292 100 23 chr11 42711038 42711168 -106072304 - L2 LINE L2 -9 3304 3165 1619 93 0 9 chr11 42711569 42711795 -106071677 + AluSg/x SINE Alu 84 307 -3 249 287 46 19 chr11 42712641 42712749 -106070723 + MIR SINE MIR 81 191 -71 1309 213 56 11 chr11 42712754 42713040 -106070432 + AluJo SINE Alu 2 300 -2 213 169 46 23 chr11 42713251 42713381 -106070091 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1460 141 26 4 chr11 42714525 42714759 -106068713 - L1PB3 LINE L1 -4 6150 5912 14566 146 42 31 chr11 42715120 42717808 -106065664 + Tigger2 DNA MER2_type 2 2717 -1 187 400 11 11 chr11 42718299 42718389 -106065083 + L2 LINE L2 3141 3230 -42 287 304 26 9 chr11 42719818 42719933 -106063539 - MIR SINE MIR -55 207 91 197 167 19 0 chr11 42722954 42723008 -106060464 + (TA)n Simple_repeat Simple_repeat 2 56 0 280 274 124 90 chr11 42723036 42723105 -106060367 + MLT1J LTR MaLR 159 224 -287 2106 118 3 13 chr11 42723105 42723418 -106060054 - AluSq SINE Alu -3 310 1 280 274 124 90 chr11 42723418 42723582 -106059890 + MLT1J LTR MaLR 224 400 -111 243 0 0 0 chr11 42723638 42723665 -106059807 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1290 217 63 114 chr11 42725621 42726285 -106057187 - L1MC4 LINE L1 -19 8023 7394 1227 245 184 21 chr11 42726296 42727202 -106056270 - L1MD3 LINE L1 -1 7994 6723 2133 115 13 3 chr11 42727998 42728303 -106055169 - AluSg SINE Alu -2 308 1 275 231 0 13 chr11 42728473 42728551 -106054921 + CT-rich Low_complexity Low_complexity 2 78 0 2200 86 0 16 chr11 42729485 42729788 -106053684 - AluSq SINE Alu -15 298 1 202 222 0 37 chr11 42729790 42729844 -106053628 + CT-rich Low_complexity Low_complexity 3 54 0 278 332 107 21 chr11 42732139 42732326 -106051146 + MIR SINE MIR 6 208 -54 258 343 20 20 chr11 42732516 42732618 -106050854 + L2 LINE L2 3171 3272 0 24 67 0 0 chr11 42732704 42732749 -106050723 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr11 42733907 42733936 -106049536 + AT_rich Low_complexity Low_complexity 1 29 0 256 250 24 0 chr11 42734361 42734445 -106049027 + MLT1I LTR MaLR 324 409 0 620 274 95 74 chr11 42735857 42736237 -106047235 + MLT1I LTR MaLR 3 390 -19 21 57 0 0 chr11 42737073 42737108 -106046364 + AT_rich Low_complexity Low_complexity 1 35 0 304 227 0 0 chr11 42737188 42737254 -106046218 - MLT1K LTR MaLR 0 588 523 359 307 39 16 chr11 42737284 42737411 -106046061 - MLT1K LTR MaLR -128 460 331 609 195 125 8 chr11 42737456 42737584 -106045888 - Tigger7 DNA MER2_type -561 144 2 659 178 67 7 chr11 42738123 42738258 -106045214 - FLAM_C SINE Alu 0 143 1 369 0 0 0 chr11 42738781 42738822 -106044650 + (CA)n Simple_repeat Simple_repeat 2 42 0 1166 22 0 0 chr11 42739057 42739193 -106044279 - L1PA7 LINE L1 -274 5880 5745 1831 69 0 29 chr11 42739193 42739462 -106044010 + L1PA7 LINE L1 5889 6154 0 21 0 0 0 chr11 42739568 42739589 -106043883 + AT_rich Low_complexity Low_complexity 1 21 0 2479 103 17 3 chr11 42739668 42740018 -106043454 + THE1A LTR MaLR 1 355 0 10793 94 13 22 chr11 42740018 42741607 -106041865 + THE1A-int LTR MaLR 1 1575 -5 1815 123 0 78 chr11 42741617 42742000 -106041472 + THE1A LTR MaLR 3 355 0 236 229 0 21 chr11 42742000 42742048 -106041424 - L2 LINE L2 -268 3045 2999 180 0 0 0 chr11 42742439 42742459 -106041013 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2196 101 0 7 chr11 42743067 42743373 -106040099 + AluY SINE Alu 1 304 -7 192 368 70 9 chr11 42743544 42743658 -106039814 - MIR SINE MIR -137 125 5 222 150 0 0 chr11 42744260 42744300 -106039172 + (TG)n Simple_repeat Simple_repeat 1 40 0 265 393 50 7 chr11 42745679 42745819 -106037653 - MIR SINE MIR -71 191 46 1386 184 53 28 chr11 42746009 42746291 -106037181 + AluJb SINE Alu 5 293 -19 360 309 45 72 chr11 42746622 42746998 -106036474 - MLT1L LTR MaLR -137 478 113 1626 120 4 23 chr11 42747153 42747412 -106036060 - AluSx SINE Alu -58 254 1 1345 186 68 4 chr11 42747461 42747740 -106035732 - L1P LINE L1 -2223 3923 3627 2120 150 17 3 chr11 42747742 42748102 -106035370 + L1PA16 LINE L1 5797 6161 -5 1375 246 84 25 chr11 42751655 42752155 -106031317 - MER39 LTR ERV1 0 682 1 224 294 15 0 chr11 42752155 42752223 -106031249 + L2 LINE L2 2606 2674 -640 3725 153 35 23 chr11 42752233 42752927 -106030545 - MER39 LTR ERV1 -5 702 1 338 269 0 13 chr11 42752928 42753006 -106030466 + L2 LINE L2 2672 2748 -566 691 182 62 73 chr11 42753014 42753086 -106030386 - MLT1D LTR MaLR 0 505 434 1931 148 154 5 chr11 42753086 42753457 -106030015 - MSTA LTR MaLR 0 428 3 691 182 62 73 chr11 42753457 42753576 -106029896 - MLT1D LTR MaLR -71 434 316 * 3162 161 29 19 chr11 42753571 42754154 -106029318 + MER39B LTR ERV1 65 653 0 1193 236 49 3 chr11 42754154 42754431 -106029041 - MLT1D LTR MaLR -189 316 27 748 289 105 36 chr11 42754698 42755415 -106028057 + L1ME3A LINE L1 5188 5952 -218 23 0 0 0 chr11 42756484 42756507 -106026965 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr11 42759737 42759764 -106023708 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 42761402 42761444 -106022028 + AT_rich Low_complexity Low_complexity 1 42 0 520 311 0 20 chr11 42761500 42761648 -106021824 - MIR SINE MIR -112 150 6 2401 60 0 0 chr11 42761992 42762277 -106021195 + AluY SINE Alu 1 285 -26 182 387 13 0 chr11 42762333 42762408 -106021064 + MIR SINE MIR 187 262 0 189 121 0 0 chr11 42762696 42762729 -106020743 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 409 278 34 51 chr11 42762833 42763009 -106020463 - L2 LINE L2 -33 3280 3108 1308 253 8 23 chr11 42763229 42763708 -106019764 + L1M4 LINE L1 2863 3334 -2812 528 278 210 4 chr11 42763717 42763998 -106019474 - L1M4 LINE L1 -1601 4545 4207 1646 95 0 9 chr11 42764009 42764231 -106019241 + AluSq SINE Alu 76 295 -18 230 264 48 96 chr11 42764245 42764412 -106019060 - L2 LINE L2 -1501 1813 1655 207 0 0 0 chr11 42765597 42765620 -106017852 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 77 0 0 chr11 42766120 42766146 -106017326 + (TTA)n Simple_repeat Simple_repeat 2 27 0 227 176 20 0 chr11 42766894 42766945 -106016527 + HsTC2 DNA Tc2 6 57 -1841 2009 215 32 24 chr11 42766985 42767519 -106015953 - L1 LINE L1 -946 5200 4663 626 149 36 18 chr11 42767593 42767761 -106015711 + GA-rich Low_complexity Low_complexity 3 173 0 4577 170 46 25 chr11 42767763 42768247 -106015225 + L1MA9 LINE L1 5293 5765 -547 363 105 0 0 chr11 42768247 42768304 -106015168 + (CA)n Simple_repeat Simple_repeat 2 58 0 4577 170 46 25 chr11 42768304 42768818 -106014654 + L1MA9 LINE L1 5765 6312 0 324 262 55 35 chr11 42768840 42769042 -106014430 + HsTC2 DNA Tc2 1649 1854 -44 218 31 0 31 chr11 42769288 42769320 -106014152 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1864 123 0 51 chr11 42769325 42769617 -106013855 - AluSx SINE Alu -35 277 1 5147 49 0 17 chr11 42770193 42770885 -106012587 - L1P LINE L1 -4064 2082 1403 * 25534 30 3 9 chr11 42770883 42774882 -106008590 + L1PA3 LINE L1 2182 6155 0 262 315 35 112 chr11 42775351 42775583 -106007889 - L2 LINE L2 -22 3291 3078 535 301 136 29 chr11 42775639 42776058 -106007414 - HAL1 LINE L1 -1244 1263 800 274 236 47 95 chr11 42776080 42776228 -106007244 + MLT1D LTR MaLR 4 144 -482 798 155 16 96 chr11 42776268 42776455 -106007017 + MLT1D LTR MaLR 334 505 0 4432 96 0 21 chr11 42777312 42778021 -106005451 + L1PA3 LINE L1 5462 6155 0 189 0 0 0 chr11 42779405 42779426 -106004046 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 244 233 33 0 chr11 42779651 42779711 -106003761 + GA-rich Low_complexity Low_complexity 1 62 0 14273 148 26 21 chr11 42780877 42782727 -106000745 - Tigger4(Zombi) DNA MER2_type 0 2731 864 2141 76 0 73 chr11 42782727 42783056 -106000416 - AluY SINE Alu -6 305 1 14273 148 26 21 chr11 42783056 42783702 -105999770 - Tigger4(Zombi) DNA MER2_type -1867 864 223 2293 253 48 40 chr11 42783752 42784476 -105998996 + MER21B LTR ERV1 27 756 -107 1964 179 129 18 chr11 42785078 42785295 -105998177 + L1MB5 LINE L1 5677 5869 -305 1716 205 8 16 chr11 42785295 42785661 -105997811 - MLT1A1 LTR MaLR -2 363 1 1964 179 129 18 chr11 42785661 42785887 -105997585 + L1MB5 LINE L1 5869 6174 0 625 311 111 36 chr11 42786197 42786470 -105997002 - L2 LINE L2 0 3313 3062 2186 126 39 17 chr11 42786470 42786826 -105996646 - THE1B LTR MaLR 0 364 1 625 311 111 36 chr11 42786826 42787057 -105996415 - L2 LINE L2 -251 3062 2768 245 138 0 17 chr11 42788245 42788303 -105995169 + (CA)n Simple_repeat Simple_repeat 1 57 0 231 109 16 31 chr11 42788307 42788371 -105995101 + (TTTTTA)n Simple_repeat Simple_repeat 3 65 0 6357 21 1 5 chr11 42788373 42789133 -105994339 - L1PA4 LINE L1 -3 6152 5396 23 0 0 0 chr11 42789133 42789156 -105994316 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr11 42789692 42789774 -105993698 + AT_rich Low_complexity Low_complexity 1 82 0 1023 294 65 20 chr11 42790234 42790593 -105992879 - L1ME3 LINE L1 -46 6116 5722 1446 173 30 104 chr11 42790593 42790987 -105992485 - MLT1A1 LTR MaLR 0 365 1 1023 294 65 20 chr11 42790987 42791209 -105992263 - L1ME3 LINE L1 -440 5722 5511 1442 274 74 13 chr11 42791222 42791894 -105991578 - L1ME3 LINE L1 -1062 5084 4372 25 83 0 0 chr11 42791911 42791959 -105991513 + AT_rich Low_complexity Low_complexity 1 48 0 1252 276 104 8 chr11 42791962 42792633 -105990839 - L1ME3 LINE L1 -2911 3235 2500 561 251 60 50 chr11 42792927 42793246 -105990226 - L1ME3 LINE L1 -3704 2442 2121 585 253 19 7 chr11 42793346 42793500 -105989972 + MER58A DNA MER1_type 9 164 0 389 227 10 0 chr11 42795411 42795508 -105987964 + L1ME1 LINE L1 6064 6161 -5 35 45 0 0 chr11 42795773 42795817 -105987655 + AT_rich Low_complexity Low_complexity 1 44 0 1006 122 13 0 chr11 42795817 42795973 -105987499 - L1PB1 LINE L1 -1 6150 5993 672 81 36 0 chr11 42795973 42796084 -105987388 + L1PB1 LINE L1 5713 5827 -324 303 397 23 11 chr11 42796087 42796261 -105987211 - MIR SINE MIR -83 179 4 303 71 0 0 chr11 42796331 42796373 -105987099 + (ATG)n Simple_repeat Simple_repeat 3 44 0 308 325 25 31 chr11 42796430 42796590 -105986882 - MIR SINE MIR -32 230 72 219 36 0 0 chr11 42798400 42798428 -105985044 + (GA)n Simple_repeat Simple_repeat 2 29 0 25 51 0 0 chr11 42799301 42799340 -105984132 + AT_rich Low_complexity Low_complexity 1 39 0 213 231 0 19 chr11 42800281 42800333 -105983139 + (CATA)n Simple_repeat Simple_repeat 4 54 0 196 358 73 36 chr11 42800644 42800781 -105982691 - MIR SINE MIR -115 147 6 201 196 0 0 chr11 42800815 42800861 -105982611 + (TG)n Simple_repeat Simple_repeat 1 46 0 10061 54 1 9 chr11 42801226 42802620 -105980852 - L1PA5 LINE L1 -1936 4210 2828 9069 54 14 2 chr11 42802620 42804554 -105978918 + L1PA5 LINE L1 4215 6152 -2 2331 301 114 55 chr11 42804668 42806387 -105977085 - L2 LINE L2 -50 3263 1437 515 330 133 0 chr11 42806404 42806607 -105976865 + MIR SINE MIR 12 241 -21 2231 88 0 7 chr11 42806688 42806985 -105976487 - AluY SINE Alu -16 295 1 1909 101 0 8 chr11 42807332 42807600 -105975872 - AluY SINE Alu -16 295 30 2479 53 0 50 chr11 42807854 42808176 -105975296 + AluY SINE Alu 2 307 -4 186 264 0 88 chr11 42809223 42809314 -105974158 - L2 LINE L2 -10 3303 3221 2332 72 0 3 chr11 42809507 42809798 -105973674 + AluY SINE Alu 1 290 -21 2926 214 23 12 chr11 42811304 42811964 -105971508 + Tigger7 DNA MER2_type 2 668 -1819 588 127 0 148 chr11 42811980 42812122 -105971350 + Tigger7 DNA MER2_type 2455 2575 -12 365 241 11 0 chr11 42812172 42812259 -105971213 - MIR SINE MIR -2 260 173 2380 190 51 68 chr11 42812287 42812993 -105970479 + LTR8A LTR ERV1 34 727 0 608 289 126 16 chr11 42813343 42813589 -105969883 - LTR16A LTR ERVL 0 450 178 325 219 0 0 chr11 42813728 42813801 -105969671 - MER116 DNA Mariner -7 73 1 758 238 30 26 chr11 42814258 42814489 -105968983 - MLT1D LTR MaLR -273 232 1 5573 223 22 92 chr11 42815629 42817386 -105966086 + L1MA9 LINE L1 3 1637 -5531 501 224 24 0 chr11 42817386 42817511 -105965961 + L1MA9 LINE L1 1921 2048 -5120 2676 207 69 36 chr11 42817536 42818052 -105965420 + L1MA9 LINE L1 6434 6986 -347 189 0 0 0 chr11 42818052 42818073 -105965399 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2676 207 69 36 chr11 42818073 42818338 -105965134 + L1MA9 LINE L1 6986 7241 -92 213 195 0 24 chr11 42818340 42818381 -105965091 + (TG)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr11 42818423 42818451 -105965021 + AT_rich Low_complexity Low_complexity 1 28 0 354 320 62 8 chr11 42819898 42820154 -105963318 - L1ME LINE L1 -317 5804 5535 1478 217 41 78 chr11 42820551 42821169 -105962303 - LTR28 LTR ERV1 -67 953 298 520 197 21 21 chr11 42821222 42821376 -105962096 - LTR28 LTR ERV1 -292 133 1 1147 191 0 13 chr11 42821470 42821701 -105961771 - L1PA16 LINE L1 -9 6157 5930 484 139 12 12 chr11 42821702 42821788 -105961684 + L1MC1 LINE L1 6244 6329 -4 960 126 0 0 chr11 42822261 42822412 -105961060 + (TA)n Simple_repeat Simple_repeat 2 152 0 2289 43 54 0 chr11 42822412 42822690 -105960782 - AluY SINE Alu -18 293 1 329 303 101 0 chr11 42823062 42823240 -105960232 + Charlie8 DNA MER1_type 70 265 -2152 247 329 24 12 chr11 42823525 42823607 -105959865 - L2 LINE L2 -16 3297 3215 614 199 0 23 chr11 42823921 42824097 -105959375 + (TA)n Simple_repeat Simple_repeat 1 172 0 406 295 81 23 chr11 42824126 42824299 -105959173 - MIR SINE MIR -48 214 32 1062 229 4 8 chr11 42825029 42825265 -105958207 + MLT1E2 LTR MaLR 389 623 -3 1676 64 57 43 chr11 42825491 42825772 -105957700 + AluY SINE Alu 1 285 -26 1834 113 0 39 chr11 42826490 42826801 -105956671 - AluSx SINE Alu -13 299 1 354 213 14 28 chr11 42827359 42827500 -105955972 + (CATA)n Simple_repeat Simple_repeat 4 142 0 326 216 23 45 chr11 42827506 42827594 -105955878 - L1MC4 LINE L1 -1340 6702 6617 1719 213 109 9 chr11 42827708 42828158 -105955314 - MER50 LTR ERV1 0 734 240 391 149 15 0 chr11 42828242 42828309 -105955163 - MER50 LTR ERV1 -657 77 10 564 308 43 53 chr11 42828506 42828805 -105954667 + L2 LINE L2 3013 3308 -5 252 170 0 0 chr11 42828883 42828936 -105954536 + GA-rich Low_complexity Low_complexity 3 55 0 2785 148 82 59 chr11 42829032 42829640 -105953832 + LTR29 LTR ERV1 1 622 0 1312 132 15 0 chr11 42830229 42830433 -105953039 - LTR62 LTR ERVK -2 717 511 974 166 32 0 chr11 42830429 42830616 -105952856 - MER50 LTR ERV1 -23 711 519 * 1260 183 109 67 chr11 42830619 42831051 -105952421 + LTR7 LTR ERV1 1 450 0 14519 171 24 35 chr11 42831051 42836297 -105947175 + HERVH LTR ERV1 1 4915 -2287 1372 180 4 0 chr11 42836294 42836561 -105946911 + HERVH LTR ERV1 5749 6016 -1697 * 3296 102 11 33 chr11 42836554 42837124 -105946348 + HERVH LTR ERV1 7157 7713 0 1299 178 102 60 chr11 42837124 42837556 -105945916 + LTR7 LTR ERV1 1 450 0 2015 178 0 6 chr11 42837556 42837921 -105945551 - MER50 LTR ERV1 -214 520 158 4744 118 4 31 chr11 42837924 42838556 -105944916 + L1MA2 LINE L1 5495 6102 -202 2216 91 7 0 chr11 42838556 42838841 -105944631 + AluSq SINE Alu 1 287 -26 4744 118 4 31 chr11 42838841 42839014 -105944458 + L1MA2 LINE L1 6102 6278 -26 1173 176 36 24 chr11 42839014 42839264 -105944208 + THE1C LTR MaLR 123 375 0 8226 143 63 20 chr11 42839267 42840779 -105942693 + THE1C-int LTR MaLR 4 1580 0 1733 184 18 44 chr11 42840779 42841164 -105942308 + THE1C LTR MaLR 1 375 0 2052 102 27 24 chr11 42841204 42841498 -105941974 + AluSx SINE Alu 1 295 -17 298 291 64 9 chr11 42842179 42842289 -105941183 - MIR SINE MIR -61 201 86 27 0 0 0 chr11 42842942 42842969 -105940503 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 42843097 42843118 -105940354 + AT_rich Low_complexity Low_complexity 1 21 0 1882 137 0 3 chr11 42843933 42844242 -105939230 - AluSq SINE Alu 0 308 1 270 325 102 51 chr11 42844314 42844569 -105938903 + L2 LINE L2 2839 3106 -166 264 59 0 0 chr11 42844813 42844847 -105938625 + (TG)n Simple_repeat Simple_repeat 2 35 0 2398 65 13 0 chr11 42845203 42845509 -105937963 + AluY SINE Alu 1 310 -1 249 179 18 0 chr11 42847186 42847242 -105936230 + MER53 DNA DNA 132 188 -1 453 62 0 0 chr11 42847356 42847421 -105936051 + (CA)n Simple_repeat Simple_repeat 2 66 0 7823 131 48 5 chr11 42850247 42851533 -105931939 - Tigger1 DNA MER2_type 0 2418 1077 43259 44 4 3 chr11 42851534 42857680 -105925792 + L1PA4 LINE L1 1 6152 -3 5939 173 26 6 chr11 42857684 42858754 -105924718 - Tigger1 DNA MER2_type -1326 1092 1 1332 31 0 0 chr11 42859180 42859339 -105924133 + L1PA4 LINE L1 5996 6154 -1 42 89 0 0 chr11 42859933 42860045 -105923427 + AT_rich Low_complexity Low_complexity 1 112 0 2533 46 0 10 chr11 42860122 42860427 -105923045 + AluY SINE Alu 1 302 -9 42 36 0 0 chr11 42861932 42861988 -105921484 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 42862133 42862154 -105921318 + AT_rich Low_complexity Low_complexity 1 21 0 229 262 48 24 chr11 42862674 42862758 -105920714 + MIR SINE MIR 147 232 -30 1574 154 33 0 chr11 42863847 42864119 -105919353 - L1PBa LINE L1 -6577 286 6 2336 97 0 3 chr11 42864323 42864634 -105918838 + AluY SINE Alu 1 310 -1 24 32 0 0 chr11 42865469 42865500 -105917972 + AT_rich Low_complexity Low_complexity 1 31 0 303 186 0 0 chr11 42866441 42866538 -105916934 + (TA)n Simple_repeat Simple_repeat 2 98 0 34 0 0 0 chr11 42866693 42866727 -105916745 + AT_rich Low_complexity Low_complexity 1 34 0 320 254 158 18 chr11 42867333 42867447 -105916025 + L2 LINE L2 3183 3312 -1 409 311 88 20 chr11 42867787 42868038 -105915434 + L1M4 LINE L1 2785 3052 -3094 358 336 96 48 chr11 42868101 42868517 -105914955 - L2 LINE L2 -5 3308 2873 2746 3 0 13 chr11 42868572 42868877 -105914595 - AluYa5 SINE Alu -10 301 1 1385 235 97 20 chr11 42868963 42869367 -105914105 - MER70B LTR ERVL -143 435 1 430 327 53 45 chr11 42869369 42869635 -105913837 - L2 LINE L2 -499 2815 2548 460 284 123 50 chr11 42869739 42870081 -105913391 + L1MC/D LINE L1 5406 5772 -2036 313 275 168 23 chr11 42870301 42870432 -105913040 + L2 LINE L2 3161 3310 -3 203 312 92 28 chr11 42870472 42870613 -105912859 + MIR3 SINE MIR 57 206 -2 28 0 0 0 chr11 42870795 42870823 -105912649 + AT_rich Low_complexity Low_complexity 1 28 0 30 83 0 0 chr11 42871496 42871568 -105911904 + AT_rich Low_complexity Low_complexity 1 72 0 337 316 7 45 chr11 42871648 42871699 -105911773 + MLT1I LTR MaLR 58 109 -300 2370 123 11 11 chr11 42871699 42872074 -105911398 + THE1C LTR MaLR 1 375 0 337 316 7 45 chr11 42872074 42872177 -105911295 + MLT1I LTR MaLR 109 206 -203 369 296 55 67 chr11 42873663 42873953 -105909519 + MLT1H LTR MaLR 19 341 -188 373 318 53 108 chr11 42874117 42874495 -105908977 + L2 LINE L2 2916 3272 0 22 0 0 0 chr11 42874846 42874868 -105908604 + AT_rich Low_complexity Low_complexity 1 22 0 295 358 78 44 chr11 42876838 42877215 -105906257 - L2 LINE L2 -174 3139 2748 1142 221 9 5 chr11 42877215 42877432 -105906040 + MER20 DNA MER1_type 1 218 -1 295 358 78 44 chr11 42877432 42877524 -105905948 - L2 LINE L2 -565 2748 2661 1839 215 8 0 chr11 42878302 42878655 -105904817 + MLT1A1 LTR MaLR 8 363 -2 238 370 84 25 chr11 42878657 42878776 -105904696 + MIR SINE MIR 26 151 -111 268 266 26 44 chr11 42879378 42879491 -105903981 - MIR SINE MIR -95 167 57 2840 3 0 0 chr11 42880188 42880492 -105902980 - AluYa5 SINE Alu -7 304 1 2007 88 68 24 chr11 42880820 42881114 -105902358 - AluY SINE Alu -4 307 1 6395 173 63 107 chr11 42881435 42883048 -105900424 - MER52A LTR ERV1 0 1755 215 297 224 0 40 chr11 42883538 42883614 -105899858 - MER52A LTR ERV1 -1682 73 1 185 341 66 22 chr11 42883864 42883955 -105899517 + MIR SINE MIR 49 143 -119 360 200 0 0 chr11 42884190 42884265 -105899207 + (TA)n Simple_repeat Simple_repeat 2 76 0 2561 65 0 0 chr11 42884265 42884572 -105898900 - AluY SINE Alu -4 307 1 2084 103 0 7 chr11 42885720 42886002 -105897470 - AluSg1 SINE Alu -29 280 1 222 346 45 26 chr11 42886614 42886770 -105896702 - MIR SINE MIR -95 167 9 183 405 0 9 chr11 42887032 42887148 -105896324 - MIR3 SINE MIR -2 206 92 24 32 0 0 chr11 42887233 42887264 -105896208 + AT_rich Low_complexity Low_complexity 1 31 0 2162 131 33 38 chr11 42887379 42887745 -105895727 + THE1B LTR MaLR 1 364 0 694 310 98 12 chr11 42887889 42888215 -105895257 + MLT1J LTR MaLR 82 435 -76 2079 115 7 10 chr11 42888238 42888534 -105894938 - AluSx SINE Alu -17 295 1 25 0 0 0 chr11 42888824 42888849 -105894623 + AT_rich Low_complexity Low_complexity 1 25 0 181 414 39 8 chr11 42888970 42889098 -105894374 + L2 LINE L2 3125 3256 -16 843 291 52 61 chr11 42889430 42889972 -105893500 + L2 LINE L2 2763 3299 -14 2068 182 14 14 chr11 42890191 42890560 -105892912 + MLT1B LTR MaLR 22 390 0 221 245 19 0 chr11 42890701 42890754 -105892718 + GA-rich Low_complexity Low_complexity 2 55 0 212 239 0 0 chr11 42892504 42892550 -105890922 + GA-rich Low_complexity Low_complexity 3 48 0 337 302 57 31 chr11 42892591 42892750 -105890722 - L3 LINE CR1 -256 1321 1159 357 229 48 84 chr11 42892784 42892950 -105890522 - L2 LINE L2 -37 3276 3117 593 249 81 5 chr11 42893170 42893379 -105890093 + L1MD3 LINE L1 7758 7982 -13 301 246 39 46 chr11 42893434 42893564 -105889908 + L1MC4a LINE L1 5350 5478 -2330 609 300 50 16 chr11 42893746 42894063 -105889409 + L1MC4a LINE L1 5630 5957 -1851 7630 47 10 9 chr11 42894065 42895804 -105887668 - L1PA5 LINE L1 -2 6152 4410 12926 51 3 1 chr11 42895804 42897457 -105886015 + L1PA5 LINE L1 2749 4405 -1741 804 293 153 47 chr11 42897484 42898418 -105885054 + L1MC4a LINE L1 5954 7006 -802 213 94 0 0 chr11 42898418 42898450 -105885022 + (TAA)n Simple_repeat Simple_repeat 1 32 0 804 293 153 47 chr11 42898450 42898531 -105884941 + L1MC4a LINE L1 7006 7077 -731 2100 138 0 3 chr11 42898536 42898847 -105884625 + AluSg SINE Alu 1 310 0 431 305 119 52 chr11 42898947 42899054 -105884418 + L1MC4 LINE L1 7344 7442 -600 1150 195 22 123 chr11 42899054 42899460 -105884012 + MLT1A1 LTR MaLR 1 365 0 431 305 119 52 chr11 42899460 42899757 -105883715 + L1MC4 LINE L1 7442 7718 -324 1742 182 17 0 chr11 42899757 42900108 -105883364 - L1MA6 LINE L1 0 6300 5944 431 305 119 52 chr11 42900108 42900293 -105883179 + L1MC4 LINE L1 7718 7985 -57 2130 140 10 39 chr11 42900293 42900679 -105882793 - THE1C LTR MaLR 0 375 1 431 305 119 52 chr11 42900679 42900742 -105882730 + L1MC4 LINE L1 7985 8042 0 246 288 82 38 chr11 42901753 42901937 -105881535 + MLT1K LTR MaLR 397 588 0 1347 253 43 32 chr11 42903187 42903649 -105879823 + MLT1C LTR MaLR 1 467 0 1556 287 41 14 chr11 42904184 42904620 -105878852 + L1M3a LINE L1 3 450 -5505 243 373 39 13 chr11 42904750 42904903 -105878569 + L1M3a LINE L1 305 461 -5494 * 2460 277 46 23 chr11 42904887 42906284 -105877188 + L1M3a LINE L1 302 1714 -4321 * 19073 151 29 90 chr11 42906265 42910670 -105872802 + L1P LINE L1 6 4141 -2005 856 273 67 64 chr11 42910775 42911120 -105872352 - MLT1E2 LTR MaLR -66 560 215 339 358 133 28 chr11 42911461 42911679 -105871793 + MIR SINE MIR 7 247 -15 2095 125 0 0 chr11 42912411 42912723 -105870749 - AluSg1 SINE Alu 0 312 1 2264 53 7 4 chr11 42912842 42913163 -105870309 + AluY SINE Alu 1 322 0 10462 103 11 3 chr11 42913223 42914777 -105868695 + L1P LINE L1 2953 4518 -1628 1591 200 3 31 chr11 42915152 42915472 -105868000 - AluJb SINE Alu -1 311 1 345 24 0 0 chr11 42915545 42915587 -105867885 + (TG)n Simple_repeat Simple_repeat 2 43 0 2390 89 0 0 chr11 42915743 42916046 -105867426 - AluY SINE Alu -8 303 1 3032 270 58 48 chr11 42916397 42917468 -105866004 + L1M4b LINE L1 11 1092 -5767 226 244 141 67 chr11 42917867 42918002 -105865470 + MIR SINE MIR 91 235 -27 1844 159 17 0 chr11 42918010 42918305 -105865167 - AluJo SINE Alu -10 302 3 5662 113 38 0 chr11 42918410 42919628 -105863844 - L1PA13 LINE L1 -4 6159 4935 192 204 23 0 chr11 42920432 42920476 -105862996 - MIR SINE MIR -56 206 162 2059 117 0 7 chr11 42920595 42920876 -105862596 - AluSc SINE Alu -30 279 1 1505 197 24 38 chr11 42920985 42921355 -105862117 + MLT1A1 LTR MaLR 1 365 0 246 215 124 0 chr11 42925175 42925296 -105858176 - MER113 DNA MER1_type? -326 195 60 184 325 130 0 chr11 42925543 42925620 -105857852 + MIR SINE MIR 119 205 -57 5158 240 93 15 chr11 42925913 42927806 -105855666 - L1M LINE L1 -756 5390 3357 886 250 159 34 chr11 42927806 42928190 -105855282 - MLT1C LTR MaLR -2 465 34 403 196 108 32 chr11 42928198 42928356 -105855116 - L1M4 LINE L1 -5146 1396 1227 2249 269 80 25 chr11 42928425 42929888 -105853584 - L1MEc LINE L1 -2833 4124 2619 1493 264 114 26 chr11 42929899 42930702 -105852770 - L1MEc LINE L1 -4644 2315 1412 2301 100 0 3 chr11 42930702 42931013 -105852459 - AluY SINE Alu -1 310 1 1493 264 114 26 chr11 42931013 42931171 -105852301 - L1MEc LINE L1 -5547 1412 1269 360 188 62 0 chr11 42931182 42931246 -105852226 - L1MEc LINE L1 -5666 1193 1126 254 222 119 82 chr11 42931351 42931594 -105851878 + L1MC5 LINE L1 7401 7652 -309 307 300 22 0 chr11 42931747 42931837 -105851635 - L1MC4 LINE L1 -1337 6705 6614 * 322 274 48 0 chr11 42931785 42931869 -105851603 + L1MC4 LINE L1 6614 6701 -1341 2663 159 8 10 chr11 42931870 42932349 -105851123 + L1PA16 LINE L1 5687 6164 -2 24 67 0 0 chr11 42932442 42932487 -105850985 + AT_rich Low_complexity Low_complexity 1 45 0 25 75 0 0 chr11 42932762 42932815 -105850657 + AT_rich Low_complexity Low_complexity 1 53 0 213 178 0 0 chr11 42932998 42933043 -105850429 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 1868 121 23 0 chr11 42933709 42933965 -105849507 + AluSx SINE Alu 36 297 -15 197 315 155 28 chr11 42934088 42934269 -105849203 + MIR SINE MIR 59 262 0 7366 39 0 0 chr11 42934439 42935932 -105847540 - L1PA4 LINE L1 -1 6154 4660 2928 120 0 17 chr11 42937202 42937661 -105845811 + L1P LINE L1 4326 4776 -1370 1846 139 26 71 chr11 42937650 42938032 -105845440 + THE1C-int LTR MaLR 1216 1580 0 * 1481 119 122 86 chr11 42938032 42938394 -105845078 + THE1C LTR MaLR 1 375 0 1954 273 45 14 chr11 42938542 42939114 -105844358 - MLT1G LTR MaLR 0 590 1 2237 101 0 3 chr11 42939343 42939639 -105843833 - AluSc SINE Alu -14 295 1 427 253 66 66 chr11 42939738 42939920 -105843552 - MIR SINE MIR -3 259 78 2191 118 0 3 chr11 42941721 42942025 -105841447 - AluSg1 SINE Alu -1 308 6 2297 130 23 3 chr11 42942032 42942386 -105841086 - THE1B LTR MaLR -3 361 1 9700 123 6 68 chr11 42942386 42944071 -105839401 - THE1B-int LTR MaLR 0 1580 1 2145 114 99 6 chr11 42944071 42944404 -105839068 - THE1B LTR MaLR 0 364 1 448 320 161 32 chr11 42945076 42945454 -105838018 + LTR33 LTR ERVL 24 450 -71 204 245 0 0 chr11 42945524 42945573 -105837899 - L2 LINE L2 0 3313 3265 832 136 38 0 chr11 42945619 42945751 -105837721 + MER72 LTR ERV1 586 722 0 881 150 6 35 chr11 42946311 42946484 -105836988 + LTR49-int LTR ERV1 1040 1207 -5124 351 257 0 27 chr11 42946486 42946560 -105836912 + tRNA-Glu-GAG tRNA tRNA 3 74 -1 497 186 0 0 chr11 42946775 42946861 -105836611 + LTR49-int LTR ERV1 1410 1495 -4836 3666 229 60 6 chr11 42946872 42946907 -105836565 + L1PA16 LINE L1 4737 4769 -1397 2020 193 68 2 chr11 42946907 42947307 -105836165 - MSTB LTR MaLR 0 426 1 3666 229 60 6 chr11 42947307 42948613 -105834859 + L1PA16 LINE L1 4769 6165 -1 1278 305 145 25 chr11 42948619 42948808 -105834664 - L2 LINE L2 -76 3237 3072 1601 212 42 16 chr11 42948808 42949186 -105834286 + MLT1B LTR MaLR 1 388 -2 1278 305 145 25 chr11 42949186 42949852 -105833620 - L2 LINE L2 -241 3072 2262 1730 199 3 0 chr11 42950504 42950796 -105832676 - AluJb SINE Alu -19 293 1 1869 176 0 0 chr11 42951270 42951565 -105831907 + AluJb SINE Alu 1 295 -17 318 274 132 0 chr11 42951922 42952028 -105831444 - MLT1L LTR MaLR -147 468 349 180 155 0 82 chr11 42952976 42953073 -105830399 + GA-rich Low_complexity Low_complexity 4 92 0 226 271 0 14 chr11 42953126 42953196 -105830276 + GA-rich Low_complexity Low_complexity 1 69 0 1575 172 29 11 chr11 42953251 42953530 -105829942 + AluJo SINE Alu 1 284 -28 369 0 0 0 chr11 42953530 42953571 -105829901 + (CA)n Simple_repeat Simple_repeat 2 42 0 2379 106 19 21 chr11 42953602 42953978 -105829494 + THE1C LTR MaLR 1 375 0 181 368 105 26 chr11 42954252 42954442 -105829030 + MIR SINE MIR 6 210 -52 280 96 173 0 chr11 42954680 42954732 -105828740 - MADE1 DNA Mariner 0 80 20 2380 88 3 0 chr11 42955156 42955453 -105828019 - AluSp SINE Alu -15 298 1 25 51 0 0 chr11 42955657 42955696 -105827776 + AT_rich Low_complexity Low_complexity 1 39 0 6488 82 3 1 chr11 42955803 42957299 -105826173 + L1PA7 LINE L1 4632 6141 -13 22 0 0 0 chr11 42957450 42957472 -105826000 + AT_rich Low_complexity Low_complexity 1 22 0 2138 94 17 7 chr11 42958041 42958338 -105825134 - AluY SINE Alu -11 300 1 40972 46 29 1 chr11 42958643 42964612 -105818860 + L1PA3 LINE L1 1 6136 -19 258 32 0 0 chr11 42964616 42964647 -105818825 + (TAA)n Simple_repeat Simple_repeat 3 33 0 31583 51 1 2 chr11 42965841 42969871 -105813601 + L1P LINE L1 1006 5034 -1112 211 238 12 83 chr11 42970372 42970456 -105813016 + MIR3 SINE MIR 100 177 -31 227 280 131 17 chr11 42970593 42970768 -105812704 - LTR37B LTR ERV1 -268 200 6 313 240 27 0 chr11 42971240 42971315 -105812157 - Charlie1 DNA MER1_type 0 2761 2685 41658 39 26 1 chr11 42971346 42977344 -105806128 + L1PA2 LINE L1 2 6152 -3 261 0 0 0 chr11 42977370 42977399 -105806073 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2049 241 98 10 chr11 42977406 42978211 -105805261 - Charlie1 DNA MER1_type -100 2661 1786 1097 243 111 20 chr11 42978208 42978550 -105804922 - Charlie1 DNA MER1_type -2388 373 1 * 279 241 35 69 chr11 42978577 42978780 -105804692 - MER31-int LTR ERV1 -3638 1298 1103 748 226 36 87 chr11 42979472 42979830 -105803642 - LTR37B LTR ERV1 -118 350 11 23 54 0 0 chr11 42979849 42979886 -105803586 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr11 42980356 42980389 -105803083 + AT_rich Low_complexity Low_complexity 1 33 0 327 223 0 43 chr11 42982055 42982149 -105801323 + L1M4 LINE L1 4517 4606 -1540 211 100 0 40 chr11 42982156 42982206 -105801266 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 235 91 29 chr11 42982217 42982460 -105801012 + L1ME3A LINE L1 5912 6169 -1 222 200 0 0 chr11 42982710 42982750 -105800722 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 86 0 0 chr11 42982982 42983017 -105800455 + (CAA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 42983268 42983291 -105800181 + AT_rich Low_complexity Low_complexity 1 23 0 1754 181 0 13 chr11 42983540 42983849 -105799623 + AluJb SINE Alu 3 307 -5 2006 150 0 0 chr11 42983859 42984159 -105799313 + AluSc SINE Alu 1 300 -9 24 0 0 0 chr11 42984231 42984255 -105799217 + AT_rich Low_complexity Low_complexity 1 24 0 507 323 82 26 chr11 42984373 42984834 -105798638 + L1ME4a LINE L1 5464 5950 -171 230 227 191 0 chr11 42984924 42985034 -105798438 + L1ME4a LINE L1 5986 6116 -5 7283 42 7 0 chr11 42986324 42987268 -105796204 + L1PA4 LINE L1 5206 6155 0 959 83 0 0 chr11 42988488 42988620 -105794852 + L1MA2 LINE L1 6173 6304 0 339 154 0 90 chr11 42988644 42988722 -105794750 - AluJ/FLAM SINE Alu -223 79 9 21 36 0 0 chr11 42989490 42989518 -105793954 + AT_rich Low_complexity Low_complexity 1 28 0 1534 167 24 3 chr11 42989967 42990286 -105793186 + L1MA4 LINE L1 5970 6303 0 266 235 252 8 chr11 42990303 42990422 -105793050 + MIR SINE MIR 45 192 -70 2060 128 0 10 chr11 42991177 42991489 -105791983 + AluSg1 SINE Alu 1 309 0 214 179 0 54 chr11 42992065 42992121 -105791351 + (TATG)n Simple_repeat Simple_repeat 3 55 0 330 360 22 15 chr11 42992622 42992758 -105790714 - L2 LINE L2 0 3313 3177 875 201 40 48 chr11 42993039 42993342 -105790130 + MER2 DNA MER2_type 2 344 -1 22 35 0 0 chr11 42993395 42993424 -105790048 + AT_rich Low_complexity Low_complexity 1 29 0 6696 62 0 0 chr11 42995606 42996449 -105787023 + L1PA7 LINE L1 5301 6143 -11 651 265 12 19 chr11 42997001 42997163 -105786309 - MER5B DNA MER1_type -17 161 1 2639 14 0 0 chr11 42997260 42997548 -105785924 - AluYa5 SINE Alu 0 311 24 873 334 51 14 chr11 42997959 42998453 -105785019 + HAL1 LINE L1 4 515 -1992 512 335 74 0 chr11 42998524 42998739 -105784733 + MIR SINE MIR 32 262 0 1179 269 82 27 chr11 42998895 42999517 -105783955 + HAL1 LINE L1 718 1373 -1134 728 255 96 102 chr11 42999602 43000144 -105783328 - L1M4 LINE L1 -1213 4933 4395 454 262 28 7 chr11 43000220 43000365 -105783107 - L1MC4 LINE L1 -143 7899 7752 239 179 200 0 chr11 43001680 43001775 -105781697 + MER5C DNA MER1_type 134 247 -77 252 214 0 36 chr11 43002090 43002146 -105781326 + GA-rich Low_complexity Low_complexity 6 59 0 325 247 43 0 chr11 43002149 43002242 -105781230 - LTR67 LTR ERVL -3 554 458 1752 184 0 3 chr11 43003298 43003591 -105779881 + AluJb SINE Alu 6 297 -15 2282 79 0 0 chr11 43004718 43004996 -105778476 - AluY SINE Alu -13 298 21 1148 176 42 139 chr11 43006121 43006454 -105777018 - MLT1A1 LTR MaLR 0 365 75 1925 57 0 0 chr11 43006454 43006706 -105776766 + AluY SINE Alu 56 307 0 1148 176 42 139 chr11 43006706 43006775 -105776697 - MLT1A1 LTR MaLR -290 75 1 289 242 65 57 chr11 43006844 43006968 -105776504 + LTR16A1 LTR ERVL 331 455 -2 1229 318 42 75 chr11 43007425 43007610 -105775862 - L2 LINE L2 -3 3310 3120 2322 82 0 7 chr11 43007610 43007913 -105775559 + AluY SINE Alu 1 301 -10 1229 318 42 75 chr11 43007913 43008067 -105775405 - L2 LINE L2 -193 3120 2962 186 43 0 0 chr11 43008067 43008090 -105775382 + (TA)n Simple_repeat Simple_repeat 1 23 0 1229 318 42 75 chr11 43008090 43008819 -105774653 - L2 LINE L2 -351 2962 2280 2051 137 0 13 chr11 43009036 43009343 -105774129 - AluSx SINE Alu -9 303 1 1159 268 46 37 chr11 43012011 43012421 -105771051 + L2 LINE L2 2269 2682 -632 1214 259 82 32 chr11 43012520 43012992 -105770480 + MLT2B1 LTR ERVL 1 396 -18 2177 131 20 11 chr11 43014728 43015080 -105768392 + THE1A LTR MaLR 1 355 0 11021 108 8 11 chr11 43015080 43015457 -105768015 + THE1A-int LTR MaLR 1 378 -1202 2183 112 0 16 chr11 43015457 43015770 -105767702 + AluY SINE Alu 1 308 -3 11021 108 8 11 chr11 43015770 43016977 -105766495 + THE1A-int LTR MaLR 378 1580 0 2490 99 8 8 chr11 43016977 43017332 -105766140 + THE1A LTR MaLR 1 355 0 414 0 0 0 chr11 43017545 43017591 -105765881 + (CA)n Simple_repeat Simple_repeat 2 47 0 1883 78 0 48 chr11 43018024 43018295 -105765177 + AluY SINE Alu 36 293 -18 2193 68 0 27 chr11 43018529 43018857 -105764615 - AluY SINE Alu 0 320 1 2420 133 3 5 chr11 43019190 43019566 -105763906 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr11 43020495 43020519 -105762953 + AT_rich Low_complexity Low_complexity 1 24 0 2443 54 20 0 chr11 43020741 43021035 -105762437 + AluY SINE Alu 1 300 -11 2084 134 0 0 chr11 43021939 43022229 -105761243 + AluSc SINE Alu 3 292 -17 246 62 0 0 chr11 43023087 43023119 -105760353 + (A)n Simple_repeat Simple_repeat 1 32 0 298 344 49 31 chr11 43023795 43023958 -105759514 - MIR SINE MIR -86 176 11 23 54 0 0 chr11 43024672 43024709 -105758763 + AT_rich Low_complexity Low_complexity 1 37 0 719 337 95 29 chr11 43024782 43024969 -105758503 - L2 LINE L2 0 3313 3140 711 289 67 39 chr11 43024969 43025329 -105758143 + MLT1A2 LTR MaLR 1 370 -4 719 337 95 29 chr11 43025329 43025946 -105757526 - L2 LINE L2 -173 3140 2450 252 354 81 23 chr11 43026062 43026137 -105757335 - L2 LINE L2 -2349 965 896 2274 103 0 6 chr11 43026137 43026448 -105757024 + AluSc SINE Alu 1 309 0 252 354 81 23 chr11 43026448 43026632 -105756840 - L2 LINE L2 -2418 896 691 1752 193 3 0 chr11 43027169 43027464 -105756008 + AluJb SINE Alu 1 296 -16 1205 134 0 6 chr11 43027551 43027730 -105755742 - AluSg/x SINE Alu -2 310 133 880 183 0 0 chr11 43027730 43027867 -105755605 - Charlie3 DNA MER1_type -2528 182 46 296 145 32 32 chr11 43027882 43027944 -105755528 + Tigger1 DNA MER2_type 1510 1571 -847 240 118 0 0 chr11 43028052 43028086 -105755386 + Alu SINE Alu 1 34 -265 1269 139 0 10 chr11 43028186 43028387 -105755085 + AluSg/x SINE Alu 106 304 -8 6937 161 126 15 chr11 43029172 43030531 -105752941 + Tigger1 DNA MER2_type 4 1513 -905 3055 155 23 8 chr11 43030534 43031011 -105752461 - MER1A DNA MER1_type 0 529 46 1794 147 7 0 chr11 43031026 43031318 -105752154 + Tigger1 DNA MER2_type 1510 1803 -615 266 230 242 0 chr11 43081418 43081502 -105701970 + MLT1E LTR MaLR 5 108 -485 648 231 81 49 chr11 43081607 43081863 -105701609 + MLT1E LTR MaLR 115 361 -232 24 32 0 0 chr11 43081966 43081997 -105701475 + AT_rich Low_complexity Low_complexity 1 31 0 2501 67 0 6 chr11 43082371 43082683 -105700789 - AluY SINE Alu -1 310 1 33 0 0 0 chr11 43083714 43083747 -105699725 + AT_rich Low_complexity Low_complexity 1 33 0 182 328 33 0 chr11 43084127 43084188 -105699284 + L2 LINE L2 3244 3306 -7 286 306 208 0 chr11 43084286 43084430 -105699042 + L2 LINE L2 2181 2354 -960 1405 157 54 74 chr11 43084443 43084793 -105698679 + MER61A LTR ERV1 1 343 0 2072 177 53 51 chr11 43084802 43085409 -105698063 + MER61A-int LTR ERV1 12 700 -4517 2270 110 3 3 chr11 43085484 43085794 -105697678 - AluSq SINE Alu -1 312 3 6621 115 63 22 chr11 43085794 43086706 -105696766 + MER61A-int LTR ERV1 1329 2202 -4794 2404 70 3 0 chr11 43086706 43087005 -105696467 + AluY SINE Alu 1 300 -11 6621 115 63 22 chr11 43087005 43087391 -105696081 + MER61A-int LTR ERV1 2202 4949 -2047 467 215 32 0 chr11 43087391 43087484 -105695988 - MLT1B LTR MaLR -33 357 262 2088 113 41 0 chr11 43087485 43087777 -105695695 + AluSg SINE Alu 1 304 -6 17111 90 26 7 chr11 43087822 43090228 -105693244 + MER61A-int LTR ERV1 2767 5217 0 1429 156 50 95 chr11 43090228 43090587 -105692885 + MER61A LTR ERV1 1 343 0 216 356 103 68 chr11 43091057 43091456 -105692016 + L2 LINE L2 2860 3272 0 217 295 103 0 chr11 43092798 43092876 -105690596 + MIR SINE MIR 119 204 -58 524 239 18 0 chr11 43093184 43093293 -105690179 + MER81 DNA DNA 4 114 0 341 265 0 12 chr11 43093314 43093397 -105690075 + L2 LINE L2 3228 3309 -4 21 95 0 0 chr11 43094375 43094438 -105689034 + AT_rich Low_complexity Low_complexity 1 63 0 30 45 0 0 chr11 43095216 43095260 -105688212 + AT_rich Low_complexity Low_complexity 1 44 0 240 86 0 0 chr11 43096572 43096607 -105686865 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 330 60 20 chr11 43098321 43098421 -105685051 + L2 LINE L2 3210 3313 0 186 221 0 88 chr11 43101885 43101953 -105681519 - MIR SINE MIR 0 262 201 722 267 6 0 chr11 43101972 43102137 -105681335 - MER45A DNA AcHobo -7 171 6 313 388 50 0 chr11 43102150 43102310 -105681162 - MIR SINE MIR -76 186 19 874 184 0 47 chr11 43102922 43103112 -105680360 + MIR SINE MIR 82 262 0 51 89 0 0 chr11 43103127 43103262 -105680210 + AT_rich Low_complexity Low_complexity 1 135 0 230 180 50 50 chr11 43103264 43103425 -105680047 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 255 237 0 0 chr11 43103425 43103484 -105679988 - MIR SINE MIR 0 262 204 206 351 138 0 chr11 43103499 43103593 -105679879 - L2 LINE L2 -41 3231 3125 379 355 30 56 chr11 43104468 43104699 -105678773 + L2 LINE L2 3048 3272 0 2451 188 36 39 chr11 43104754 43105314 -105678158 + MER74A LTR ERVL 1 558 0 390 298 107 40 chr11 43105908 43106133 -105677339 + MIR SINE MIR 13 252 -10 874 249 94 49 chr11 43107040 43107340 -105676132 + MER110A LTR ERV1 24 350 -118 1920 79 21 28 chr11 43107340 43107631 -105675841 - L1PA10 LINE L1 0 6168 5880 874 249 94 49 chr11 43107631 43107756 -105675716 + MER110A LTR ERV1 350 468 0 194 203 0 13 chr11 43107972 43108051 -105675421 + (TA)n Simple_repeat Simple_repeat 2 79 0 300 53 0 0 chr11 43108051 43108089 -105675383 + (CA)n Simple_repeat Simple_repeat 2 39 0 917 155 62 6 chr11 43108154 43108315 -105675157 - MER58B DNA MER1_type -1 340 171 4984 130 31 7 chr11 43108332 43109201 -105674271 + L1MA3 LINE L1 4124 5013 -1133 5345 104 40 7 chr11 43109210 43110050 -105673422 + L1MA3 LINE L1 5436 6303 -2 30 27 0 0 chr11 43110051 43110088 -105673384 + AT_rich Low_complexity Low_complexity 1 37 0 295 313 73 0 chr11 43110091 43110187 -105673285 - MER58B DNA MER1_type -236 105 3 1184 265 82 30 chr11 43110189 43110627 -105672845 + MLT1L LTR MaLR 148 608 -7 180 0 0 0 chr11 43110645 43110665 -105672807 + (TC)n Simple_repeat Simple_repeat 1 20 0 285 294 56 82 chr11 43111578 43111881 -105671591 + MLT1J2 LTR MaLR 103 397 -53 21 57 0 0 chr11 43112442 43112477 -105670995 + AT_rich Low_complexity Low_complexity 1 35 0 442 275 63 35 chr11 43113251 43113393 -105670079 - L2 LINE L2 0 3313 3168 24 0 0 0 chr11 43114577 43114601 -105668871 + AT_rich Low_complexity Low_complexity 1 24 0 205 305 158 0 chr11 43115344 43115439 -105668033 - L2 LINE L2 -1 3312 3203 2420 64 3 10 chr11 43115535 43115847 -105667625 - AluY SINE Alu -1 310 1 2136 107 4 0 chr11 43116647 43116928 -105666544 + AluSg SINE Alu 16 297 -13 358 316 163 14 chr11 43117124 43117333 -105666139 + MIR SINE MIR 23 262 0 7381 40 3 0 chr11 43117598 43118691 -105664781 + L1PA4 LINE L1 5060 6155 0 2113 127 3 0 chr11 43118791 43119091 -105664381 - AluSq SINE Alu -12 301 1 503 310 94 33 chr11 43120370 43120583 -105662889 - MIR SINE MIR 0 262 37 1784 151 142 0 chr11 43121775 43122093 -105661379 + THE1B LTR MaLR 1 363 -1 514 222 167 43 chr11 43122363 43122432 -105661040 + MER5A DNA MER1_type 8 67 -122 2414 60 3 7 chr11 43122432 43122734 -105660738 + AluY SINE Alu 1 301 -10 514 222 167 43 chr11 43122734 43122826 -105660646 + MER5A DNA MER1_type 67 189 0 427 320 74 6 chr11 43122843 43123018 -105660454 + MIR SINE MIR 15 201 -61 237 255 21 0 chr11 43123025 43123072 -105660400 - MER20 DNA MER1_type -170 49 2 697 225 46 0 chr11 43123094 43123245 -105660227 + MER20 DNA MER1_type 62 219 0 2302 93 0 3 chr11 43124445 43124746 -105658726 + AluSp SINE Alu 5 304 -9 207 354 53 82 chr11 43125437 43125779 -105657693 + L2 LINE L2 2015 2346 -968 1845 89 4 0 chr11 43125809 43126044 -105657428 + AluSp SINE Alu 58 293 -20 2146 87 0 4 chr11 43126222 43126498 -105656974 - AluSx SINE Alu -8 304 30 869 243 0 0 chr11 43128708 43128881 -105654591 - MER5A DNA MER1_type -3 186 14 2116 165 29 5 chr11 43129098 43129479 -105653993 - MLT1B LTR MaLR 0 390 1 666 207 0 0 chr11 43129813 43129929 -105653543 + FLAM_C SINE Alu 1 116 -17 210 278 0 0 chr11 43130475 43130529 -105652943 + A-rich Low_complexity Low_complexity 1 54 0 291 328 38 23 chr11 43130684 43130815 -105652657 - L2 LINE L2 -4 3268 3136 1568 195 17 23 chr11 43131253 43131555 -105651917 - AluJb SINE Alu -12 300 1 297 313 51 56 chr11 43131745 43131959 -105651513 + MLT1K LTR MaLR 214 426 -162 1542 104 9 13 chr11 43132854 43133085 -105650387 + AluSp SINE Alu 1 230 -83 4981 72 29 4 chr11 43133085 43133768 -105649704 + LTR30 LTR ERV1 23 722 0 702 59 49 0 chr11 43133768 43133870 -105649602 + AluSp SINE Alu 206 312 -1 2015 218 77 8 chr11 43134175 43134243 -105649229 - MER67D LTR ERV1 -3 511 449 294 50 0 0 chr11 43134243 43134283 -105649189 + (GA)n Simple_repeat Simple_repeat 1 40 0 2015 218 77 8 chr11 43134283 43134692 -105648780 - MER67D LTR ERV1 -65 449 1 1621 198 100 28 chr11 43134942 43135371 -105648101 - LTR48 LTR ERV1 -326 461 2 22 0 0 0 chr11 43135507 43135529 -105647943 + AT_rich Low_complexity Low_complexity 1 22 0 203 133 44 0 chr11 43135749 43135794 -105647678 + (TA)n Simple_repeat Simple_repeat 2 48 0 871 305 9 0 chr11 43135848 43136058 -105647414 - MLT1E2 LTR MaLR -93 533 322 237 302 0 0 chr11 43136262 43136348 -105647124 + L1ME LINE L1 5575 5660 -461 2235 224 34 65 chr11 43136399 43137050 -105646422 - LTR8 LTR ERV1 -23 668 38 21 0 0 0 chr11 43137154 43137175 -105646297 + AT_rich Low_complexity Low_complexity 1 21 0 4471 139 19 37 chr11 43139184 43139973 -105643499 + MER4E LTR ERV1 5 779 0 260 200 44 0 chr11 43140017 43140107 -105643365 + (TA)n Simple_repeat Simple_repeat 2 95 0 3449 139 76 37 chr11 43140400 43140513 -105642959 - LTR51 LTR ERV1 0 671 564 1636 144 127 86 chr11 43140513 43140922 -105642550 - MSTA LTR MaLR 0 428 3 3449 139 76 37 chr11 43140922 43141454 -105642018 - LTR51 LTR ERV1 -107 564 1 1438 283 96 28 chr11 43141737 43142563 -105640909 - L2 LINE L2 -1 3312 2376 280 169 345 14 chr11 43142566 43142708 -105640764 + MER53 DNA DNA 1 189 0 6405 67 2 0 chr11 43142748 43143581 -105639891 + L1PA5 LINE L1 1527 2361 -3785 6430 71 28 0 chr11 43143603 43144450 -105639022 - L1PA5 LINE L1 0 6154 5284 23365 55 5 0 chr11 43144450 43148223 -105635249 + L1PA5 LINE L1 2349 6137 -17 359 289 0 0 chr11 43148225 43148315 -105635157 - L1MC4 LINE L1 -1339 6703 6614 12060 140 23 19 chr11 43148491 43150379 -105633093 - Tigger1 DNA MER2_type 0 2418 540 2021 143 0 7 chr11 43150379 43150679 -105632793 - AluSx SINE Alu -14 298 1 12060 140 23 19 chr11 43150679 43150888 -105632584 - Tigger1 DNA MER2_type -1878 540 333 2171 118 0 7 chr11 43150888 43151185 -105632287 - AluSx SINE Alu -17 295 1 12060 140 23 19 chr11 43151185 43151492 -105631980 - Tigger1 DNA MER2_type -2085 333 2 201 171 0 0 chr11 43151690 43151725 -105631747 + T-rich Low_complexity Low_complexity 2 36 0 3014 107 70 16 chr11 43152919 43153404 -105630068 + MER9 LTR ERVK 1 511 0 2335 104 7 0 chr11 43154479 43154787 -105628685 - AluSp SINE Alu -3 310 1 22 0 0 0 chr11 43154889 43154911 -105628561 + AT_rich Low_complexity Low_complexity 1 22 0 413 250 94 0 chr11 43154988 43155148 -105628324 - L1ME LINE L1 -344 5777 5603 1907 135 7 16 chr11 43155148 43155451 -105628021 + AluSx SINE Alu 1 300 -12 401 303 64 52 chr11 43155492 43155743 -105627729 - L2 LINE L2 -18 3295 3042 352 303 45 8 chr11 43155890 43156022 -105627450 - L1ME LINE L1 -2415 5393 5257 238 346 59 52 chr11 43157371 43157524 -105625948 - L2 LINE L2 0 3272 3119 1199 259 122 20 chr11 43158773 43159175 -105624297 - MLT1H LTR MaLR -105 444 2 1485 156 0 8 chr11 43159461 43159704 -105623768 - AluSg/x SINE Alu 0 310 70 2654 155 56 23 chr11 43160579 43161095 -105622377 + L1MA7 LINE L1 5509 6041 -250 586 183 16 0 chr11 43161102 43161228 -105622244 + L1MA7 LINE L1 6159 6286 -5 1634 132 135 36 chr11 43161586 43161919 -105621553 + MLT2D LTR ERVL 1 366 -48 494 200 36 79 chr11 43162044 43162209 -105621263 + MLT1J1 LTR MaLR 44 201 -245 311 261 0 11 chr11 43162292 43162384 -105621088 + MLT1I LTR MaLR 318 408 -1 501 285 43 30 chr11 43162386 43162791 -105620681 - MLT1L LTR MaLR 0 615 137 302 226 95 36 chr11 43164498 43164582 -105618890 + L2 LINE L2 3148 3236 -36 470 320 34 23 chr11 43164647 43164822 -105618650 + MER5A DNA MER1_type 10 186 -3 1614 191 0 14 chr11 43168050 43168332 -105615140 + AluJb SINE Alu 3 280 -32 25 0 0 0 chr11 43168562 43168587 -105614885 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 43170995 43171020 -105612452 + AT_rich Low_complexity Low_complexity 1 25 0 191 328 15 0 chr11 43171656 43171723 -105611749 + MIR SINE MIR 121 188 -74 348 287 20 40 chr11 43171894 43171995 -105611477 + MER5A DNA MER1_type 81 179 -10 5190 191 16 11 chr11 43172031 43174019 -105609453 + L1PA16 LINE L1 4145 6143 -23 2225 119 42 14 chr11 43174190 43174544 -105608928 - THE1B LTR MaLR 0 364 1 321 242 69 43 chr11 43174562 43174709 -105608763 - MIR SINE MIR -63 145 4 513 310 84 17 chr11 43175368 43175619 -105607853 - MLT1J LTR MaLR -156 355 51 1949 219 48 42 chr11 43176151 43176653 -105606819 + MLT1D LTR MaLR 1 505 0 222 321 219 0 chr11 43176715 43176852 -105606620 - MIR SINE MIR -43 219 53 1950 149 14 0 chr11 43176923 43177211 -105606261 - AluSx SINE Alu -13 299 8 688 295 43 0 chr11 43177255 43177462 -105606010 - MER58A DNA MER1_type -2 222 7 563 311 87 49 chr11 43177600 43177966 -105605506 + L2 LINE L2 2930 3309 -4 191 322 98 46 chr11 43179220 43179394 -105604078 + L2 LINE L2 2573 2755 -559 867 203 34 123 chr11 43179875 43180284 -105603188 - Charlie4a DNA MER1_type -97 411 37 1388 141 173 12 chr11 43180493 43180748 -105602724 + AluSg SINE Alu 1 296 -4 2145 134 0 0 chr11 43180750 43181055 -105602417 + AluSx SINE Alu 1 305 -7 190 135 0 81 chr11 43181116 43181153 -105602319 - L3b LINE CR1 -128 1455 1422 225 143 0 0 chr11 43181173 43181208 -105602264 - MLT1J LTR MaLR -380 87 53 1071 233 32 18 chr11 43181363 43181681 -105601791 + MLT1C LTR MaLR 136 618 -8 202 154 26 0 chr11 43181747 43181786 -105601686 + T-rich Low_complexity Low_complexity 1 40 0 665 212 120 0 chr11 43181835 43182052 -105601420 + L1M4 LINE L1 828 1070 -5472 2729 89 14 3 chr11 43182083 43182454 -105601018 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr11 43182459 43182494 -105600978 + AT_rich Low_complexity Low_complexity 1 35 0 507 330 76 4 chr11 43182548 43182784 -105600688 + MIR SINE MIR 4 256 -6 422 307 220 8 chr11 43183122 43183363 -105600109 - MLT1I LTR MaLR -20 389 98 1702 181 98 17 chr11 43183441 43183800 -105599672 + MSTD LTR MaLR 1 388 -8 4392 250 17 57 chr11 43183807 43184598 -105598874 + MSTD-int LTR MaLR 1 640 -1011 4250 126 24 0 chr11 43184598 43185227 -105598245 + LTR9B LTR ERV1 1 644 0 4392 250 17 57 chr11 43185227 43185857 -105597615 + MSTD-int LTR MaLR 640 1294 -357 2514 235 96 2 chr11 43186009 43186570 -105596902 + MSTD-int LTR MaLR 1122 1735 0 1647 177 57 46 chr11 43186571 43186960 -105596512 + MSTD LTR MaLR 2 394 -2 646 201 72 127 chr11 43187305 43187749 -105595723 + L1MC4 LINE L1 7356 7942 -53 473 249 173 12 chr11 43189693 43189866 -105593606 + L1MD3 LINE L1 7742 7942 -53 343 361 137 26 chr11 43190266 43191009 -105592463 + L2 LINE L2 2059 2884 -430 1181 299 63 46 chr11 43191046 43191629 -105591843 + MLT1E LTR MaLR 1 593 0 371 336 122 18 chr11 43192698 43192927 -105590545 - MIR SINE MIR 0 262 10 271 398 56 15 chr11 43192933 43193129 -105590343 + MER115 DNA AcHobo 2 205 -488 868 233 67 33 chr11 43193270 43193510 -105589962 + MER115 DNA AcHobo 446 693 0 462 234 40 0 chr11 43194526 43194650 -105588822 - MER58 DNA MER1_type -3 2417 2289 207 162 0 0 chr11 43194824 43194861 -105588611 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1938 100 3 48 chr11 43195141 43195430 -105588042 - AluY SINE Alu -35 276 1 247 234 31 0 chr11 43195518 43195582 -105587890 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 340 331 87 21 chr11 43196133 43196375 -105587097 - MIR SINE MIR 0 262 5 520 330 11 34 chr11 43197666 43197842 -105585630 + MER5B DNA MER1_type 1 172 -6 2198 115 10 0 chr11 43198791 43199086 -105584386 - AluSc SINE Alu -11 298 1 915 206 64 50 chr11 43199207 43199256 -105584216 - MER58A DNA MER1_type -2197 223 176 2082 135 0 0 chr11 43199256 43199553 -105583919 - AluSx SINE Alu -15 297 1 915 206 64 50 chr11 43199553 43199722 -105583750 - MER58A DNA MER1_type -2244 176 2 465 19 0 0 chr11 43200366 43200420 -105583052 + (TG)n Simple_repeat Simple_repeat 1 54 0 2186 121 7 0 chr11 43201617 43201923 -105581549 + AluSp SINE Alu 4 311 -2 2096 121 7 0 chr11 43201933 43202230 -105581242 + AluSc SINE Alu 1 299 -10 233 288 117 9 chr11 43203027 43203138 -105580334 + MIR SINE MIR 74 196 -66 736 338 94 19 chr11 43203210 43204042 -105579430 + L2 LINE L2 2430 3313 0 194 309 49 12 chr11 43204117 43204198 -105579274 + L2 LINE L2 3186 3269 -3 692 116 66 25 chr11 43205511 43205632 -105577840 - MER20 DNA MER1_type -93 126 1 323 209 47 0 chr11 43206602 43206688 -105576784 + MIR SINE MIR 172 261 -1 25 51 0 0 chr11 43207615 43207654 -105575818 + AT_rich Low_complexity Low_complexity 1 39 0 224 207 17 52 chr11 43208103 43208161 -105575311 + L2 LINE L2 1859 1914 -1400 248 293 113 0 chr11 43208385 43208491 -105574981 + MIR3 SINE MIR 85 202 -6 193 260 20 0 chr11 43208794 43208844 -105574628 - L2 LINE L2 -5 3308 3258 763 169 0 0 chr11 43209047 43209165 -105574307 + FLAM_A SINE Alu 2 119 -14 203 182 227 0 chr11 43210715 43210759 -105572713 + MIR SINE MIR 95 148 -114 903 245 15 10 chr11 43210963 43211167 -105572305 + MER58A DNA MER1_type 5 209 -15 2374 60 0 35 chr11 43211196 43211511 -105571961 - AluY SINE Alu -7 304 1 910 258 148 9 chr11 43211558 43211895 -105571577 + Charlie7 DNA MER1_type 43 426 -2186 268 205 26 51 chr11 43211950 43212028 -105571444 + Charlie7 DNA MER1_type 437 512 -2100 204 40 0 0 chr11 43212099 43212124 -105571348 + (TG)n Simple_repeat Simple_repeat 1 25 0 197 133 0 0 chr11 43212924 43212954 -105570518 - MIR SINE MIR -71 191 162 1286 176 5 18 chr11 43213091 43213312 -105570160 - AluJo SINE Alu -9 303 86 272 309 111 11 chr11 43213391 43213572 -105569900 - MIR SINE MIR -62 200 2 271 273 71 30 chr11 43214910 43215009 -105568463 - L2 LINE L2 -1 3271 3169 193 191 24 0 chr11 43215105 43215147 -105568325 - L2 LINE L2 -96 3217 3175 252 86 0 0 chr11 43215783 43215818 -105567654 + (A)n Simple_repeat Simple_repeat 1 35 0 218 326 30 8 chr11 43216029 43216119 -105567353 + MIR SINE MIR 73 163 -45 707 254 11 11 chr11 43216569 43216750 -105566722 - L2 LINE L2 -2617 697 517 2086 126 17 0 chr11 43216928 43217230 -105566242 + AluSx SINE Alu 1 307 -5 1899 246 87 103 chr11 43217416 43218795 -105564677 + L2 LINE L2 1910 3251 -62 279 232 18 0 chr11 43218802 43218858 -105564614 - MIR SINE MIR -62 146 90 493 261 50 31 chr11 43218992 43219153 -105564319 + MIR SINE MIR 84 247 -15 281 336 16 39 chr11 43219540 43219668 -105563804 - MIR SINE MIR -50 212 88 216 395 90 8 chr11 43219936 43220070 -105563402 + L2 LINE L2 3122 3266 -6 193 202 71 60 chr11 43220995 43221079 -105562393 + L2 LINE L2 337 421 -2893 513 338 80 62 chr11 43222442 43222663 -105560809 - L2 LINE L2 -6 3307 3091 6078 171 13 14 chr11 43222663 43224572 -105558900 - L1PA13 LINE L1 0 6163 4193 513 338 80 62 chr11 43224572 43224814 -105558658 - L2 LINE L2 -222 3091 2836 1211 255 123 12 chr11 43224823 43225254 -105558218 - MLT1D LTR MaLR -1 504 26 338 279 122 69 chr11 43225286 43225399 -105558073 - L2 LINE L2 -510 2804 2698 1341 175 78 30 chr11 43225399 43225668 -105557804 - AluJo SINE Alu -30 282 1 338 279 122 69 chr11 43225668 43225873 -105557599 - L2 LINE L2 -616 2698 2469 14426 193 42 19 chr11 43226876 43233340 -105550132 + L1PB1 LINE L1 6 6859 -8 337 319 36 36 chr11 43234711 43234877 -105548595 + L2 LINE L2 3148 3313 0 2010 114 3 20 chr11 43236397 43236703 -105546769 + AluSx SINE Alu 1 301 -11 819 179 7 0 chr11 43236827 43236967 -105546505 - MLT1A1 LTR MaLR -1 364 224 302 307 51 51 chr11 43237611 43237748 -105545724 - MIR SINE MIR -84 178 42 204 219 0 0 chr11 43238460 43238501 -105544971 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 309 344 6 6 chr11 43289537 43289700 -105493772 - MER103 DNA DNA -2 164 2 1569 126 8 12 chr11 43290039 43290294 -105493178 + L1PA13 LINE L1 5907 6160 -3 254 384 46 20 chr11 43290508 43290659 -105492813 + L2 LINE L2 2587 2741 -573 2534 61 0 3 chr11 43290793 43291105 -105492367 - AluY SINE Alu 0 311 1 539 267 47 41 chr11 43291105 43291184 -105492288 + L2 LINE L2 3108 3185 -128 832 295 67 39 chr11 43291184 43291615 -105491857 - MLT1J1 LTR MaLR -3 443 1 539 267 47 41 chr11 43291615 43291707 -105491765 + L2 LINE L2 3185 3280 -33 667 278 61 0 chr11 43291766 43291964 -105491508 - MIR SINE MIR -21 241 32 195 186 0 0 chr11 43293109 43293152 -105490320 + (TATG)n Simple_repeat Simple_repeat 2 44 0 221 200 0 50 chr11 43293850 43293910 -105489562 + CT-rich Low_complexity Low_complexity 1 57 0 186 276 81 35 chr11 43294527 43294614 -105488858 - L2 LINE L2 -84 3229 3139 22 0 0 0 chr11 43294879 43294901 -105488571 + AT_rich Low_complexity Low_complexity 1 22 0 1402 244 60 22 chr11 43294950 43295400 -105488072 + MLT1C LTR MaLR 1 467 0 2151 183 14 33 chr11 43295521 43295947 -105487525 - MLT2B2 LTR ERVL 0 515 98 2817 116 0 57 chr11 43295947 43296421 -105487051 - L1MA5 LINE L1 -406 5894 5448 2314 123 48 18 chr11 43296421 43296656 -105486816 + L1MA5 LINE L1 5888 6144 -156 2411 108 39 3 chr11 43296656 43297018 -105486454 + THE1C LTR MaLR 1 375 0 2314 123 48 18 chr11 43297018 43297178 -105486294 + L1MA5 LINE L1 6144 6298 -2 737 125 9 0 chr11 43297208 43297320 -105486152 - MLT2B2 LTR ERVL -407 113 1 2313 107 0 0 chr11 43297463 43297772 -105485700 + AluY SINE Alu 1 309 -2 652 316 43 37 chr11 43297788 43298111 -105485361 - L3 LINE CR1 -92 1485 1161 25 0 0 0 chr11 43299416 43299441 -105484031 + AT_rich Low_complexity Low_complexity 1 25 0 224 254 119 0 chr11 43299819 43299878 -105483594 + L2 LINE L2 3204 3269 -3 180 158 0 0 chr11 43299879 43299917 -105483555 + (ACTG)n Simple_repeat Simple_repeat 2 39 0 314 54 0 0 chr11 43299997 43300034 -105483438 + U2 snRNA snRNA 1 37 -151 689 364 62 9 chr11 43300447 43300881 -105482591 + L2 LINE L2 2462 2918 -396 2170 99 44 0 chr11 43300934 43301227 -105482245 - AluSg1 SINE Alu -3 306 1 279 0 0 0 chr11 43301547 43301578 -105481894 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1526 194 4 18 chr11 43301932 43302211 -105481261 + AluJo SINE Alu 21 295 -17 1170 221 90 15 chr11 43302692 43303082 -105480390 - LTR37A LTR ERV1 0 426 8 483 215 128 51 chr11 43303182 43303377 -105480095 + MER46C DNA MER2_type 99 308 -30 781 212 50 45 chr11 43303391 43303544 -105479928 - MER63A DNA MER1_type -1488 200 44 288 0 0 0 chr11 43303544 43303576 -105479896 + (TG)n Simple_repeat Simple_repeat 2 33 0 781 212 50 45 chr11 43303576 43303620 -105479852 - MER63A DNA MER1_type -1644 44 2 1028 111 0 0 chr11 43304151 43304286 -105479186 - AluSg/x SINE Alu -25 287 153 230 276 122 58 chr11 43304290 43304446 -105479026 - L2 LINE L2 -15 3298 3133 195 299 75 0 chr11 43304501 43304568 -105478904 - L2 LINE L2 -258 3014 2943 768 63 118 16 chr11 43304752 43304879 -105478593 + AluY SINE Alu 171 310 -1 255 333 23 16 chr11 43304929 43305058 -105478414 + L2 LINE L2 3179 3308 -5 289 209 68 107 chr11 43305169 43305346 -105478126 + L2 LINE L2 2805 2974 -340 2030 133 0 13 chr11 43305371 43305672 -105477800 - AluSx SINE Alu -15 297 1 317 325 96 6 chr11 43305744 43305910 -105477562 + L2 LINE L2 3131 3311 -2 893 263 32 88 chr11 43306232 43306642 -105476830 + MLT1J LTR MaLR 92 478 -33 658 318 56 0 chr11 43307217 43307431 -105476041 - MIR SINE MIR -21 241 16 401 280 83 42 chr11 43308435 43308628 -105474844 - MIR SINE MIR -13 249 49 1289 184 78 45 chr11 43308702 43309105 -105474367 + LTR47A LTR ERVL 1 452 0 1122 250 79 21 chr11 43309105 43309433 -105474039 + MLT1A2 LTR MaLR 24 370 -4 1511 201 20 3 chr11 43310133 43310431 -105473041 - AluJo SINE Alu -9 303 1 274 308 14 68 chr11 43310557 43310703 -105472769 + L2 LINE L2 2926 3063 -250 237 196 20 0 chr11 43310714 43310765 -105472707 + (TAA)n Simple_repeat Simple_repeat 1 52 0 612 284 119 0 chr11 43310766 43310967 -105472505 - MIR SINE MIR -18 244 20 314 349 8 23 chr11 43311123 43311252 -105472220 + L2 LINE L2 3185 3311 -2 204 128 0 26 chr11 43311684 43311723 -105471749 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 304 167 39 chr11 43311890 43312094 -105471378 + L2 LINE L2 3080 3309 -4 386 336 74 9 chr11 43312958 43313175 -105470297 - MIR SINE MIR -24 238 8 2111 133 0 0 chr11 43313236 43313530 -105469942 + AluSx SINE Alu 1 294 -18 303 329 68 55 chr11 43314147 43314366 -105469106 + MIR SINE MIR 1 222 -40 417 348 31 25 chr11 43315010 43315211 -105468261 - MIR3 SINE MIR -10 198 5 2333 67 0 3 chr11 43315242 43315558 -105467914 - AluY SINE Alu 0 315 1 280 152 30 0 chr11 43315805 43315871 -105467601 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr11 43317491 43317511 -105465961 + (TAA)n Simple_repeat Simple_repeat 2 21 0 243 320 13 0 chr11 43319913 43319991 -105463481 + L1MC/D LINE L1 5485 5563 -558 288 303 104 62 chr11 43321170 43321411 -105462061 - MIR SINE MIR 0 262 12 2301 32 0 7 chr11 43321791 43322073 -105461399 - L1PA4 LINE L1 -259 5896 5617 1851 51 51 0 chr11 43322073 43322306 -105461166 + L1PA4 LINE L1 5901 6149 -6 2104 125 3 3 chr11 43322803 43323107 -105460365 + AluSc SINE Alu 4 307 -2 255 189 0 0 chr11 43323462 43323515 -105459957 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr11 43323622 43323650 -105459822 + AT_rich Low_complexity Low_complexity 1 28 0 233 317 0 0 chr11 43323650 43323710 -105459762 + L2 LINE L2 3213 3272 0 315 259 75 52 chr11 43323775 43323949 -105459523 + L1MC/D LINE L1 5638 5815 -1993 1216 204 12 0 chr11 43323982 43324222 -105459250 - L1PA15 LINE L1 -20 6145 5903 10321 192 1 0 chr11 43324272 43327321 -105456151 + L1PA13 LINE L1 3161 6152 -11 5982 122 70 149 chr11 43327332 43328217 -105455255 - Tigger1 DNA MER2_type -1030 1388 668 2137 109 3 3 chr11 43328217 43328520 -105454952 - AluSp SINE Alu -10 303 1 5982 122 70 149 chr11 43328520 43329140 -105454332 - Tigger1 DNA MER2_type -1750 668 1 201 349 61 23 chr11 43329167 43329299 -105454173 - MIR SINE MIR -105 157 21 21 0 0 0 chr11 43329556 43329577 -105453895 + AT_rich Low_complexity Low_complexity 1 21 0 6562 146 17 22 chr11 43329749 43331989 -105451483 - L1MA3 LINE L1 0 7724 5480 * 19782 172 46 16 chr11 43331967 43332379 -105451093 - L1MA3 LINE L1 -3250 4315 3917 643 131 37 0 chr11 43332379 43332486 -105450986 + HY1 scRNA scRNA 1 111 -1 19782 172 46 16 chr11 43332486 43332899 -105450573 - L1MA3 LINE L1 -3648 3917 3518 787 44 0 26 chr11 43332899 43333013 -105450459 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 19782 172 46 16 chr11 43333013 43333278 -105450194 - L1MA3 LINE L1 -4047 3518 3262 575 0 0 0 chr11 43333278 43333347 -105450125 - L1PA3 LINE L1 -3 6152 6084 19782 172 46 16 chr11 43333347 43334251 -105449221 - L1MA3 LINE L1 -4303 3262 2387 1713 183 14 0 chr11 43334251 43334536 -105448936 + AluSx SINE Alu 1 289 -23 19782 172 46 16 chr11 43334536 43336724 -105446748 - L1MA3 LINE L1 -5178 2387 16 504 32 0 0 chr11 43336751 43336813 -105446659 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 388 301 72 26 chr11 43336815 43336968 -105446504 + MIR SINE MIR 16 175 -87 447 229 25 25 chr11 43336975 43337119 -105446353 + MER63 DNA MER1_type 689 1058 -4 226 277 36 24 chr11 43337124 43337207 -105446265 + MIR SINE MIR 173 256 -6 359 241 193 21 chr11 43337216 43337361 -105446111 - MIR SINE MIR -58 204 35 435 315 51 17 chr11 43337624 43337802 -105445670 - MIR SINE MIR 0 262 79 180 0 0 0 chr11 43338487 43338507 -105444965 + (TC)n Simple_repeat Simple_repeat 1 20 0 2131 128 0 3 chr11 43338718 43339023 -105444449 + AluSc SINE Alu 1 304 -5 613 151 0 67 chr11 43339099 43339218 -105444254 - AluJb SINE Alu -23 289 179 180 355 122 0 chr11 43339941 43340048 -105443424 + L2 LINE L2 2638 2757 -557 941 327 111 6 chr11 43340446 43340942 -105442530 + L1MEc LINE L1 93 640 -5756 8979 162 25 19 chr11 43341059 43342811 -105440661 + L1PA13 LINE L1 3581 5320 -843 1843 150 7 0 chr11 43342811 43343084 -105440388 + AluSx SINE Alu 6 280 -32 195 100 0 0 chr11 43343084 43343114 -105440358 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 8979 162 25 19 chr11 43343114 43343949 -105439523 + L1PA13 LINE L1 5319 6163 0 1319 285 76 52 chr11 43344389 43345533 -105437939 + L1MEc LINE L1 650 1820 -4576 21 36 0 0 chr11 43345598 43345626 -105437846 + AT_rich Low_complexity Low_complexity 1 28 0 352 304 52 0 chr11 43345707 43345822 -105437650 + MIR3 SINE MIR 36 156 -52 273 378 37 24 chr11 43346374 43346538 -105436934 + MIR3 SINE MIR 39 204 -4 229 280 118 11 chr11 43347160 43347253 -105436219 + MIR3 SINE MIR 58 160 -48 342 302 0 10 chr11 43347490 43347586 -105435886 + L2 LINE L2 3178 3272 0 310 338 125 34 chr11 43348028 43348324 -105435148 + L2 LINE L2 2974 3296 -17 417 266 52 13 chr11 43349159 43349313 -105434159 + MIR SINE MIR 28 187 -75 181 295 167 0 chr11 43349440 43349518 -105433954 - L2 LINE L2 -3 3269 3179 2078 101 28 3 chr11 43349718 43350006 -105433466 - AluSp SINE Alu -18 295 1 742 156 32 19 chr11 43350036 43350190 -105433282 - L1MA8 LINE L1 -4 6287 6132 27 0 0 0 chr11 43351214 43351241 -105432231 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 43351460 43351481 -105431991 + AT_rich Low_complexity Low_complexity 1 21 0 889 235 5 31 chr11 43352784 43352980 -105430492 - MLT1E2 LTR MaLR -418 208 18 359 311 43 37 chr11 43353442 43353924 -105429548 + L1ME LINE L1 4892 5387 -777 2060 198 14 12 chr11 43353924 43354348 -105429124 + MSTB LTR MaLR 1 425 -1 359 311 43 37 chr11 43354348 43354537 -105428935 + L1ME LINE L1 5387 5573 -591 343 345 0 18 chr11 43354675 43354785 -105428687 - L2 LINE L2 0 3272 3165 320 312 11 11 chr11 43355228 43355321 -105428151 - MIR3 SINE MIR -38 170 78 411 330 53 9 chr11 43356165 43356392 -105427080 + MIR SINE MIR 1 237 -25 324 102 0 0 chr11 43357079 43357128 -105426344 + (TG)n Simple_repeat Simple_repeat 2 50 0 456 19 0 0 chr11 43358470 43358523 -105424949 + (CA)n Simple_repeat Simple_repeat 2 54 0 185 337 126 11 chr11 43358755 43358850 -105424622 - MIR3 SINE MIR -25 183 78 474 49 0 0 chr11 43360730 43360791 -105422681 + (TG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr11 43361615 43361637 -105421835 + AT_rich Low_complexity Low_complexity 1 22 0 467 291 141 9 chr11 43361668 43361895 -105421577 + MIR SINE MIR 2 258 -4 352 216 30 90 chr11 43363112 43363246 -105420226 + MLT1K LTR MaLR 408 533 -55 494 304 118 10 chr11 43363609 43363813 -105419659 - MIR SINE MIR -18 244 19 205 243 0 0 chr11 43363863 43363900 -105419572 + L2 LINE L2 3218 3254 -18 235 317 0 49 chr11 43365020 43365143 -105418329 + GA-rich Low_complexity Low_complexity 6 122 0 1953 94 16 8 chr11 43366154 43366430 -105417042 + AluSx SINE Alu 34 312 0 2020 125 7 0 chr11 43367776 43368057 -105415415 - AluSp SINE Alu -30 283 1 428 174 12 23 chr11 43369000 43369086 -105414386 + Tigger7 DNA MER2_type 2403 2487 0 336 279 0 0 chr11 43369101 43369187 -105414285 - MIR SINE MIR 0 262 177 380 326 228 10 chr11 43369909 43370102 -105413370 + MIR SINE MIR 28 262 0 1227 174 185 7 chr11 43370117 43370404 -105413068 - MER44D DNA MER2_type 0 609 2 233 365 138 6 chr11 43370719 43370900 -105412572 - MIR SINE MIR -21 241 37 23 0 0 0 chr11 43371047 43371070 -105412402 + AT_rich Low_complexity Low_complexity 1 23 0 250 351 107 0 chr11 43371107 43371238 -105412234 - MIR3 SINE MIR -7 201 57 348 24 0 0 chr11 43371309 43371350 -105412122 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 254 0 14 chr11 43371506 43371577 -105411895 - L2 LINE L2 -5 3308 3239 374 262 199 31 chr11 43372086 43372277 -105411195 - MIR SINE MIR -12 250 28 226 291 38 25 chr11 43373404 43373483 -105409989 - MIR SINE MIR -108 154 75 233 211 19 19 chr11 43374814 43374866 -105408606 + GA-rich Low_complexity Low_complexity 3 54 0 250 244 163 0 chr11 43375103 43375189 -105408283 + MIR3 SINE MIR 109 208 0 240 35 0 0 chr11 43377252 43377281 -105406191 + (CGGGGG)n Simple_repeat Simple_repeat 2 30 0 267 215 0 0 chr11 43377657 43377722 -105405750 + A-rich Low_complexity Low_complexity 1 65 0 201 178 0 44 chr11 43377979 43378024 -105405448 + CT-rich Low_complexity Low_complexity 1 43 0 2291 86 0 16 chr11 43378601 43378916 -105404556 + AluSg SINE Alu 1 310 0 257 299 246 27 chr11 43380358 43380545 -105402927 - MIR SINE MIR -6 256 30 562 282 168 5 chr11 43381752 43381961 -105401511 - MIR SINE MIR -2 260 18 511 284 159 39 chr11 43382285 43382701 -105400771 - MLT1H LTR MaLR 0 549 64 1978 153 30 24 chr11 43382701 43383074 -105400398 - THE1C LTR MaLR 0 375 1 511 284 159 39 chr11 43383074 43383146 -105400326 - MLT1H LTR MaLR -485 64 2 201 293 35 0 chr11 43383735 43383793 -105399679 + L2 LINE L2 3254 3313 0 2030 168 75 0 chr11 43383972 43384370 -105399102 - MSTA LTR MaLR 0 428 1 781 277 58 30 chr11 43384598 43384860 -105398612 + MER2 DNA MER2_type 1 275 -70 756 218 26 13 chr11 43384860 43385016 -105398456 - FRAM SINE Alu -8 158 1 781 277 58 30 chr11 43385016 43385082 -105398390 + MER2 DNA MER2_type 275 338 -7 211 200 0 0 chr11 43387343 43387383 -105396089 + (TG)n Simple_repeat Simple_repeat 1 40 0 369 269 29 0 chr11 43387418 43387522 -105395950 + L3 LINE CR1 1363 1469 -108 22 94 0 0 chr11 43387685 43387749 -105395723 + AT_rich Low_complexity Low_complexity 1 64 0 353 298 221 34 chr11 43388682 43388791 -105394681 + L2 LINE L2 2743 2830 -483 1784 104 22 108 chr11 43388791 43389107 -105394365 - AluYb8 SINE Alu -16 302 14 353 298 221 34 chr11 43389107 43389488 -105393984 + L2 LINE L2 2830 3309 -4 557 320 90 8 chr11 43389716 43389950 -105393522 + MIR SINE MIR 6 258 -4 238 232 58 29 chr11 43390345 43390414 -105393058 + MIR SINE MIR 83 153 -109 301 206 32 0 chr11 43390715 43390778 -105392694 - MIR SINE MIR -12 250 186 312 259 27 54 chr11 43390881 43390993 -105392479 + MIR SINE MIR 67 175 -87 275 65 22 0 chr11 43391042 43391088 -105392384 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 484 147 14 140 chr11 43391111 43391254 -105392218 - MER20 DNA MER1_type -45 174 50 305 291 48 32 chr11 43391606 43391795 -105391677 + L2 LINE L2 3114 3305 -8 940 179 17 0 chr11 43392464 43392637 -105390835 + MLT1D LTR MaLR 21 196 -309 413 318 80 42 chr11 43392713 43392952 -105390520 + MLT1K LTR MaLR 269 516 -72 843 185 0 23 chr11 43392969 43393142 -105390330 - MLT-int LTR MaLR -1461 274 106 * 897 206 21 60 chr11 43393137 43393502 -105389970 - L1MB7 LINE L1 -80 6103 5769 1682 178 21 3 chr11 43393571 43393858 -105389614 - AluJb SINE Alu -16 296 5 215 288 93 51 chr11 43394430 43394548 -105388924 + L2 LINE L2 3145 3267 -5 281 221 29 15 chr11 43394650 43394718 -105388754 - MIR SINE MIR -5 257 189 188 343 60 0 chr11 43395417 43395484 -105387988 + L2 LINE L2 3202 3272 0 2375 100 0 0 chr11 43395720 43396020 -105387452 + AluSc SINE Alu 1 300 -9 244 342 50 25 chr11 43396348 43396468 -105387004 + MIR SINE MIR 36 158 -104 1950 193 25 50 chr11 43397362 43397655 -105385817 + L1MA5A LINE L1 4769 5043 -1103 2309 77 10 29 chr11 43397655 43397968 -105385504 - AluY SINE Alu -4 307 1 1950 193 25 50 chr11 43397968 43398229 -105385243 + L1MA5A LINE L1 5043 5309 -837 * 5177 150 26 10 chr11 43398222 43399238 -105384234 + L1MA5A LINE L1 5263 6295 -2 275 316 101 43 chr11 43399685 43399824 -105383648 - MIR SINE MIR -108 154 8 596 278 19 42 chr11 43401610 43401822 -105381650 - MIR SINE MIR -2 260 54 189 352 99 28 chr11 43401878 43402060 -105381412 + MIR SINE MIR 20 214 -48 543 53 0 0 chr11 43403029 43403104 -105380368 + (TATG)n Simple_repeat Simple_repeat 2 76 0 570 67 0 0 chr11 43403143 43403218 -105380254 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1143 281 36 64 chr11 43403260 43403559 -105379913 + L2 LINE L2 2827 3108 -205 965 219 0 28 chr11 43403559 43403774 -105379698 - MER3 DNA MER1_type 0 209 1 1143 281 36 64 chr11 43403774 43403975 -105379497 + L2 LINE L2 3108 3313 0 1418 248 30 41 chr11 43404003 43404471 -105379001 + L1MA9 LINE L1 5810 6272 -40 304 263 19 88 chr11 43405140 43405300 -105378172 - L1ME4a LINE L1 -8 6113 5965 1998 117 0 7 chr11 43405313 43405595 -105377877 - AluSx SINE Alu -1 311 32 2027 176 84 31 chr11 43406009 43406463 -105377009 + LTR2B LTR ERV1 13 490 0 209 354 217 0 chr11 43406517 43406692 -105376780 - MIR SINE MIR -36 226 14 300 353 20 50 chr11 43408957 43409158 -105374314 + MIR SINE MIR 20 214 -48 21 0 0 0 chr11 43409759 43409780 -105373692 + AT_rich Low_complexity Low_complexity 1 21 0 2404 74 0 7 chr11 43410070 43410369 -105373103 - AluSx SINE Alu -15 297 1 539 307 27 36 chr11 43410449 43410674 -105372798 - MIR SINE MIR -30 232 10 200 325 70 53 chr11 43410927 43411041 -105372431 - L3b LINE CR1 -243 1340 1225 297 296 78 42 chr11 43411093 43411235 -105372237 + MIR3 SINE MIR 26 172 -36 22 0 0 0 chr11 43412276 43412298 -105371174 + AT_rich Low_complexity Low_complexity 1 22 0 202 297 209 34 chr11 43412374 43412522 -105370950 - MIR SINE MIR -60 202 29 2208 121 0 0 chr11 43413734 43414023 -105369449 - AluSx SINE Alu -23 289 1 262 368 33 53 chr11 43414900 43415237 -105368235 - L2 LINE L2 -800 2514 2185 180 403 56 0 chr11 43415391 43415463 -105368009 + L2 LINE L2 3104 3179 -93 634 221 0 22 chr11 43415536 43415672 -105367800 + FLAM_A SINE Alu 1 133 0 228 231 26 13 chr11 43415841 43415919 -105367553 + (TA)n Simple_repeat Simple_repeat 1 79 0 341 208 160 0 chr11 43415972 43416078 -105367394 - MIR SINE MIR -10 252 130 503 81 0 0 chr11 43416310 43416384 -105367088 - L1PA11 LINE L1 -1 6173 6100 2156 116 3 0 chr11 43416464 43416756 -105366716 - AluSx SINE Alu -19 293 1 373 394 110 13 chr11 43417268 43417686 -105365786 + L2 LINE L2 2594 3053 -260 686 319 28 8 chr11 43418333 43418584 -105364888 - MIR SINE MIR 0 262 7 479 321 132 0 chr11 43418670 43418860 -105364612 - MIR SINE MIR -34 228 14 471 261 50 83 chr11 43418902 43418950 -105364522 - MER20 DNA MER1_type -8 211 163 1658 189 0 7 chr11 43418950 43419236 -105364236 + AluJb SINE Alu 14 297 -15 471 261 50 83 chr11 43419236 43419405 -105364067 - MER20 DNA MER1_type -56 163 1 264 318 45 18 chr11 43419663 43419773 -105363699 + MIR SINE MIR 149 261 -1 208 143 0 0 chr11 43420321 43420356 -105363116 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 308 287 83 87 chr11 43420913 43421327 -105362145 + MLT1I LTR MaLR 31 402 -7 257 371 91 17 chr11 43421804 43422036 -105361436 + MIR SINE MIR 8 256 -6 370 165 35 12 chr11 43424373 43424458 -105359014 + MER5A DNA MER1_type 27 113 -76 24 0 0 0 chr11 43425243 43425267 -105358205 + AT_rich Low_complexity Low_complexity 1 24 0 1267 188 4 55 chr11 43425561 43425833 -105357639 + AluJo SINE Alu 26 283 -29 213 39 0 0 chr11 43425836 43425862 -105357610 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 205 317 38 98 chr11 43425868 43426051 -105357421 - MIR3 SINE MIR -14 194 23 * 399 216 60 17 chr11 43425986 43426102 -105357370 + MIR3 SINE MIR 67 187 -21 307 252 31 119 chr11 43427753 43427979 -105355493 - MIR3 SINE MIR -8 254 49 193 241 52 35 chr11 43427978 43428036 -105355436 - L2 LINE L2 0 3313 3255 * 30 27 0 0 chr11 43428069 43428106 -105355366 + AT_rich Low_complexity Low_complexity 1 37 0 1932 138 3 35 chr11 43428138 43428450 -105355022 - AluSx SINE Alu -10 302 1 1141 213 165 51 chr11 43428647 43429200 -105354272 + LTR48B LTR ERV1 1 784 -3 331 333 88 6 chr11 43430123 43430282 -105353190 + MIR SINE MIR 77 248 -14 25 31 0 0 chr11 43430289 43430321 -105353151 + AT_rich Low_complexity Low_complexity 1 32 0 2304 106 0 3 chr11 43430423 43430724 -105352748 - AluSq SINE Alu -13 300 1 21 36 0 0 chr11 43431564 43431592 -105351880 + AT_rich Low_complexity Low_complexity 1 28 0 322 294 91 7 chr11 43431930 43432073 -105351399 - MIR SINE MIR -87 175 21 195 362 40 53 chr11 43432555 43432707 -105350765 + L2 LINE L2 2946 3095 -177 544 225 50 0 chr11 43432778 43432898 -105350574 - MER20 DNA MER1_type -3 216 91 1269 199 115 0 chr11 43432904 43433165 -105350307 + AluJo SINE Alu 6 296 -16 251 216 193 68 chr11 43433166 43433192 -105350280 - MER20 DNA MER1_type -120 99 78 619 129 24 8 chr11 43433192 43433316 -105350156 + L1MA4 LINE L1 6170 6295 -5 251 216 193 68 chr11 43433316 43433377 -105350095 - MER20 DNA MER1_type -141 78 1 2184 103 7 3 chr11 43433506 43433806 -105349666 + AluSq SINE Alu 1 301 -12 183 186 14 29 chr11 43434006 43434076 -105349396 + (TA)n Simple_repeat Simple_repeat 2 70 0 3322 123 15 56 chr11 43434368 43434908 -105348564 + LTR24B LTR ERV1 1 516 -60 2054 130 3 0 chr11 43434908 43435193 -105348279 + AluSx SINE Alu 1 286 -26 3322 123 15 56 chr11 43435193 43435245 -105348227 + LTR24B LTR ERV1 516 569 -7 391 288 34 0 chr11 43436623 43436769 -105346703 + (CA)n Simple_repeat Simple_repeat 2 152 0 183 205 0 0 chr11 43436775 43436814 -105346658 + (CATA)n Simple_repeat Simple_repeat 4 42 0 445 288 50 6 chr11 43437859 43438019 -105345453 + MIR SINE MIR 40 206 -56 496 276 41 18 chr11 43438152 43438322 -105345150 + MIR SINE MIR 40 213 -49 746 311 51 36 chr11 43439102 43439251 -105344221 - L2 LINE L2 0 3313 3168 1544 186 43 17 chr11 43439251 43439552 -105343920 - AluJo SINE Alu -3 309 1 746 311 51 36 chr11 43439552 43439814 -105343658 - L2 LINE L2 -145 3168 2896 227 270 34 45 chr11 43440071 43440160 -105343312 + MIR SINE MIR 80 167 -95 263 343 66 0 chr11 43440742 43440879 -105342593 + MIR SINE MIR 85 230 -32 216 200 0 0 chr11 43441005 43441055 -105342417 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 485 296 87 27 chr11 43441950 43442362 -105341110 + MLT1L LTR MaLR 83 545 -70 567 283 44 17 chr11 43443436 43443616 -105339856 - MIR SINE MIR -60 202 18 5311 24 0 0 chr11 43443629 43444268 -105339204 - L1PA3 LINE L1 -760 5386 4748 6454 20 0 5 chr11 43444268 43445022 -105338450 + L1PA3 LINE L1 5404 6155 0 1569 182 10 32 chr11 43445331 43445639 -105337833 - AluJo SINE Alu -11 301 1 6767 67 3 4 chr11 43446168 43447446 -105336026 + L1PA7 LINE L1 4869 6154 0 203 261 216 45 chr11 43447643 43447819 -105335653 + MIR SINE MIR 3 208 -54 695 200 0 0 chr11 43447990 43448105 -105335367 - FLAM_A SINE Alu -18 115 1 302 222 16 0 chr11 43448543 43448606 -105334866 + MIR SINE MIR 197 260 -2 221 210 0 81 chr11 43448612 43448674 -105334798 - MIR SINE MIR -186 76 20 1752 166 6 16 chr11 43450468 43450782 -105332690 + AluJb SINE Alu 2 312 0 267 224 20 0 chr11 43450793 43450842 -105332630 + AluJ/monomer SINE Alu 4 53 -250 610 164 0 0 chr11 43450843 43450947 -105332525 + AluJb SINE Alu 208 311 -1 326 359 58 6 chr11 43451150 43451306 -105332166 - MIR SINE MIR -77 185 22 249 57 0 0 chr11 43451389 43451424 -105332048 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 2393 72 0 0 chr11 43451809 43452102 -105331370 - AluY SINE Alu -18 293 1 295 289 77 45 chr11 43453187 43453343 -105330129 + MER5B DNA MER1_type 16 176 -2 301 266 147 0 chr11 43453746 43453855 -105329617 - MIR SINE MIR 0 262 138 1922 191 13 18 chr11 43454639 43455031 -105328441 - MLT1B LTR MaLR 0 390 1 36 0 0 0 chr11 43459181 43459217 -105324255 + AT_rich Low_complexity Low_complexity 1 36 0 853 227 11 5 chr11 43459717 43459902 -105323570 + MER5A DNA MER1_type 3 188 -1 247 350 51 8 chr11 43460046 43460163 -105323309 - L2 LINE L2 -212 3060 2939 265 207 81 72 chr11 43460456 43460567 -105322905 + MIR SINE MIR 96 207 -55 2155 67 6 80 chr11 43461870 43462197 -105321275 - AluY SINE Alu -8 303 1 37 23 0 0 chr11 43462207 43462251 -105321221 + AT_rich Low_complexity Low_complexity 1 44 0 4776 172 21 41 chr11 43462264 43462600 -105320872 - L1MA10 LINE L1 0 6334 5993 2512 55 0 0 chr11 43462600 43462908 -105320564 - AluY SINE Alu -3 308 1 4776 172 21 41 chr11 43462908 43463602 -105319870 - L1MA10 LINE L1 -341 5993 5324 1179 185 24 0 chr11 43463603 43463814 -105319658 - AluJo SINE Alu -10 302 87 297 0 0 0 chr11 43463836 43463869 -105319603 + (TTA)n Simple_repeat Simple_repeat 2 34 0 976 218 0 0 chr11 43463869 43464085 -105319387 - L1MA10 LINE L1 -849 5297 5082 453 301 144 22 chr11 43464267 43464496 -105318976 - MIR SINE MIR 0 262 6 1435 134 7 75 chr11 43465343 43465500 -105317972 + L1PA16 LINE L1 5887 6016 -150 2084 106 0 35 chr11 43465500 43465841 -105317631 + AluSc SINE Alu 1 309 0 1435 134 7 75 chr11 43465841 43465975 -105317497 + L1PA16 LINE L1 6016 6158 -8 26 50 0 0 chr11 43465987 43466027 -105317445 + AT_rich Low_complexity Low_complexity 1 40 0 259 365 38 31 chr11 43466249 43466408 -105317064 + MIR SINE MIR 36 195 -67 231 304 108 0 chr11 43469426 43469528 -105313944 - MIR SINE MIR -106 156 44 340 353 38 38 chr11 43470433 43470671 -105312801 - MIR SINE MIR 0 262 25 1889 132 7 0 chr11 43470791 43471078 -105312394 - AluSg SINE Alu 0 310 22 463 359 48 19 chr11 43471339 43471545 -105311927 - MIR SINE MIR -38 224 13 3568 149 17 43 chr11 43471715 43472435 -105311037 + L1MC2 LINE L1 5643 6343 -1 22 35 0 0 chr11 43472435 43472464 -105311008 + AT_rich Low_complexity Low_complexity 1 29 0 188 258 161 0 chr11 43472678 43472740 -105310732 - L2 LINE L2 -12 3301 3230 205 267 0 0 chr11 43475582 43475627 -105307845 - MER5A DNA MER1_type -22 167 123 1874 162 3 0 chr11 43475628 43475912 -105307560 + AluSx SINE Alu 4 288 -24 217 354 12 0 chr11 43475915 43475997 -105307475 - MER5B DNA MER1_type -42 136 54 24 0 0 0 chr11 43477724 43477748 -105305724 + AT_rich Low_complexity Low_complexity 1 24 0 548 309 129 11 chr11 43477748 43478182 -105305290 + L1ME4a LINE L1 5485 5969 -152 277 353 98 0 chr11 43478218 43478391 -105305081 + L2 LINE L2 3113 3302 -11 271 284 85 50 chr11 43478782 43478983 -105304489 - L1ME LINE L1 -297 5824 5617 4693 27 0 0 chr11 43479066 43479615 -105303857 + L1PA3 LINE L1 5606 6154 -1 274 403 12 21 chr11 43479734 43479977 -105303495 + L3 LINE CR1 1168 1408 -169 560 403 28 41 chr11 43480501 43480960 -105302512 + L2 LINE L2 2817 3269 -3 22 0 0 0 chr11 43481078 43481100 -105302372 + AT_rich Low_complexity Low_complexity 1 22 0 252 86 0 0 chr11 43481149 43481184 -105302288 + (TC)n Simple_repeat Simple_repeat 2 36 0 181 233 250 26 chr11 43482691 43482807 -105300665 - MIR SINE MIR -55 207 66 210 293 10 50 chr11 43483026 43483125 -105300347 + MIR3 SINE MIR 113 207 -1 205 293 101 20 chr11 43483657 43483756 -105299716 - MIR3 SINE MIR -1 207 101 573 279 127 22 chr11 43484024 43484300 -105299172 + MLT1H LTR MaLR 218 522 -27 18640 110 9 18 chr11 43484698 43486293 -105297179 + L1PA7 LINE L1 1027 2635 -3519 1919 103 65 14 chr11 43486293 43486584 -105296888 + AluY SINE Alu 1 306 -5 18640 110 9 18 chr11 43486584 43489892 -105293580 + L1PA7 LINE L1 2635 6154 0 938 199 112 0 chr11 43490189 43490385 -105293087 - MER20 DNA MER1_type 0 219 2 271 311 16 82 chr11 43490623 43490806 -105292666 + MLT1J LTR MaLR 291 461 -50 295 388 25 72 chr11 43491019 43491339 -105292133 + L2 LINE L2 2968 3272 0 457 209 95 27 chr11 43491345 43491493 -105291979 + L1ME4a LINE L1 5960 6117 -4 356 198 189 0 chr11 43493431 43493542 -105289930 + MER58 DNA MER1_type 45 176 -2244 4511 161 51 9 chr11 43493542 43494654 -105288818 + L1MA8 LINE L1 4459 5613 -678 675 135 71 0 chr11 43494654 43494793 -105288679 + L1MA8 LINE L1 6139 6289 -2 738 163 8 0 chr11 43494804 43494927 -105288545 + MER58 DNA MER1_type 151 274 -2146 1156 214 30 15 chr11 43494978 43495305 -105288167 - MER33 DNA MER1_type -4 320 1 424 345 46 21 chr11 43495555 43495793 -105287679 - L3 LINE CR1 -492 1085 842 444 297 34 14 chr11 43496650 43496798 -105286674 - MIR SINE MIR -26 236 86 478 363 26 9 chr11 43497485 43497711 -105285761 + MIR SINE MIR 1 230 -32 4156 236 37 9 chr11 43500034 43501044 -105282428 + MER45B DNA AcHobo 2 1039 -1 344 279 48 113 chr11 43501067 43501296 -105282176 - L2 LINE L2 -199 3073 2860 282 345 113 11 chr11 43501407 43501584 -105281888 - MIR SINE MIR -1 261 67 222 340 146 19 chr11 43501614 43501706 -105281766 + L2 LINE L2 3149 3257 -15 186 43 0 0 chr11 43501706 43501729 -105281743 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 329 316 199 0 chr11 43501869 43502040 -105281432 + MIR3 SINE MIR 4 208 0 1792 142 0 60 chr11 43502125 43502456 -105281016 - AluSx SINE Alu -1 311 1 189 147 0 0 chr11 43502496 43502530 -105280942 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 6372 82 5 15 chr11 43502965 43503952 -105279520 + L1PA10 LINE L1 5197 6167 -1 213 298 0 0 chr11 43504619 43504676 -105278796 + (CAT)n Simple_repeat Simple_repeat 3 59 0 1828 209 111 89 chr11 43506538 43506632 -105276840 - MER63C DNA MER1_type -130 930 840 195 69 0 0 chr11 43506632 43506661 -105276811 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1828 209 111 89 chr11 43506661 43507046 -105276426 - MER63C DNA MER1_type -220 840 465 2775 16 0 0 chr11 43507046 43507353 -105276119 - AluY SINE Alu -4 307 1 1828 209 111 89 chr11 43507353 43507742 -105275730 - MER63C DNA MER1_type -595 465 11 24 32 0 0 chr11 43508214 43508245 -105275227 + AT_rich Low_complexity Low_complexity 1 31 0 316 331 98 0 chr11 43508253 43508416 -105275056 + L1MC4a LINE L1 5682 5860 -1948 205 294 43 87 chr11 43509625 43509717 -105273755 - L2 LINE L2 0 3272 3185 2250 110 0 0 chr11 43509722 43510022 -105273450 - AluY SINE Alu -11 300 1 1094 289 94 34 chr11 43510024 43510492 -105272980 + L2 LINE L2 2818 3313 0 2050 137 0 13 chr11 43510933 43511232 -105272240 + AluSx SINE Alu 3 297 -15 1886 167 7 7 chr11 43511255 43511549 -105271923 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr11 43511561 43511585 -105271887 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr11 43511846 43511876 -105271596 + AT_rich Low_complexity Low_complexity 1 30 0 370 288 101 7 chr11 43512028 43512167 -105271305 + MIR3 SINE MIR 51 202 -6 1704 116 0 0 chr11 43512859 43513083 -105270389 - AluSq SINE Alu -89 224 1 2912 15 0 0 chr11 43514367 43514701 -105268771 + L1PA2 LINE L1 5822 6155 0 21 0 0 0 chr11 43514725 43514746 -105268726 + AT_rich Low_complexity Low_complexity 1 21 0 1691 100 129 0 chr11 43514762 43515003 -105268469 + AluSg1 SINE Alu 26 297 -12 280 336 74 32 chr11 43515258 43515475 -105267997 - MIR SINE MIR -31 231 6 256 286 11 79 chr11 43517338 43517516 -105265956 - L2 LINE L2 -1217 2097 1932 198 265 129 45 chr11 43517736 43517868 -105265604 + MIR SINE MIR 119 261 -1 466 312 0 7 chr11 43519155 43519293 -105264179 - L2 LINE L2 -520 2794 2658 22 0 0 0 chr11 43519828 43519850 -105263622 + AT_rich Low_complexity Low_complexity 1 22 0 823 300 40 77 chr11 43520883 43520978 -105262494 + L2 LINE L2 2657 2754 -559 2153 127 0 0 chr11 43520978 43521286 -105262186 - AluSx SINE Alu -4 308 1 2176 116 20 0 chr11 43521291 43521592 -105261880 - AluSc SINE Alu -2 307 1 823 300 40 77 chr11 43521592 43522180 -105261292 + L2 LINE L2 2758 3313 0 952 107 8 0 chr11 43522509 43522640 -105260832 - AluY SINE Alu -179 132 1 254 315 137 30 chr11 43522790 43522850 -105260622 - MIR SINE MIR -5 257 205 2256 116 0 0 chr11 43522850 43523152 -105260320 - AluSg SINE Alu -8 302 1 254 315 137 30 chr11 43523152 43523288 -105260184 - MIR SINE MIR -57 205 40 918 267 0 4 chr11 43523294 43523519 -105259953 + MER58A DNA MER1_type 1 224 0 618 219 8 0 chr11 43523520 43523643 -105259829 + L2 LINE L2 3190 3313 0 186 43 0 0 chr11 43523696 43523719 -105259753 + (T)n Simple_repeat Simple_repeat 1 23 0 221 404 41 20 chr11 43524898 43525044 -105258428 + MIR3 SINE MIR 16 164 -44 649 277 85 21 chr11 43526263 43526498 -105256974 - MIR SINE MIR 0 262 13 207 157 0 0 chr11 43526507 43526558 -105256914 + T-rich Low_complexity Low_complexity 1 51 0 344 0 0 0 chr11 43526565 43526608 -105256864 - L1PA4 LINE L1 -3 6152 6110 188 250 23 0 chr11 43527956 43528000 -105255472 + L3 LINE CR1 565 609 -968 1897 147 29 47 chr11 43528684 43529066 -105254406 - THE1C LTR MaLR 0 375 1 2002 122 31 3 chr11 43529925 43530211 -105253261 - AluSg SINE Alu -16 294 1 6866 62 42 0 chr11 43530364 43531344 -105252128 - L1PA7 LINE L1 -8 6146 5154 203 133 22 0 chr11 43531422 43531467 -105252005 + A-rich Low_complexity Low_complexity 3 48 0 286 299 11 11 chr11 43531594 43531681 -105251791 - MIR3 SINE MIR -36 172 86 26 30 0 0 chr11 43532528 43532561 -105250911 + AT_rich Low_complexity Low_complexity 1 33 0 319 368 27 0 chr11 43532831 43533054 -105250418 + L1M4 LINE L1 3073 3301 -2845 2309 109 0 3 chr11 43533094 43533405 -105250067 - AluSg SINE Alu 0 310 1 378 221 29 0 chr11 43533418 43533522 -105249950 + L1M4 LINE L1 3343 3449 -2697 2076 100 0 27 chr11 43533522 43533822 -105249650 + L1P LINE L1 2 293 -5853 271 43 109 0 chr11 43533810 43533856 -105249616 + L1P LINE L1 966 1016 -5130 * 7566 31 0 0 chr11 43533856 43534909 -105248563 + L1PA4 LINE L1 5097 6149 -6 275 349 68 0 chr11 43534913 43535059 -105248413 + MIR SINE MIR 51 206 -56 1013 208 22 90 chr11 43535069 43535435 -105248037 + L1M4 LINE L1 3439 3779 -2367 879 237 51 0 chr11 43535450 43535686 -105247786 + L1MB7 LINE L1 5921 6168 -16 262 309 83 22 chr11 43538169 43538399 -105245073 + HAL1 LINE L1 1115 1358 -1149 217 191 0 44 chr11 43538529 43538597 -105244875 + GA-rich Low_complexity Low_complexity 2 66 0 216 277 0 0 chr11 43538607 43538654 -105244818 + polypurine Low_complexity Low_complexity 4 50 0 * 221 171 0 0 chr11 43538620 43538655 -105244817 + A-rich Low_complexity Low_complexity 1 35 0 228 67 0 0 chr11 43538817 43538847 -105244625 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr11 43538947 43538971 -105244501 + AT_rich Low_complexity Low_complexity 1 24 0 538 336 57 9 chr11 43539584 43539813 -105243659 + MLT1J LTR MaLR 5 244 -267 212 250 42 0 chr11 43540693 43540765 -105242707 + (CATA)n Simple_repeat Simple_repeat 2 76 0 217 309 0 0 chr11 43541918 43541973 -105241499 - L2 LINE L2 -17 3296 3242 276 336 106 0 chr11 43542520 43542633 -105240839 + L2 LINE L2 3148 3272 0 716 273 34 19 chr11 43543144 43543353 -105240119 + MIR SINE MIR 38 249 -13 213 147 0 59 chr11 43543476 43543544 -105239928 + (TTATA)n Simple_repeat Simple_repeat 3 66 0 186 43 0 0 chr11 43544309 43544332 -105239140 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1391 226 26 57 chr11 43544582 43545003 -105238469 - MLT2D LTR ERVL -6 408 1 8478 100 3 1 chr11 43545514 43546656 -105236816 + L1P3 LINE L1 8 1152 -5309 212 277 57 63 chr11 43547313 43547472 -105236000 - L2 LINE L2 -8 3305 3148 351 0 0 0 chr11 43548135 43548174 -105235298 + (TG)n Simple_repeat Simple_repeat 1 39 0 330 275 106 0 chr11 43548526 43548668 -105234804 - MER103 DNA DNA 0 166 10 7058 185 34 5 chr11 43548779 43551254 -105232218 + L1PB4 LINE L1 3607 6155 -1 272 385 73 5 chr11 43551323 43551515 -105231957 - MIR SINE MIR -10 252 48 2232 109 7 3 chr11 43552108 43552410 -105231062 - AluSg SINE Alu -7 303 1 2163 144 19 30 chr11 43553578 43553946 -105229526 + THE1B LTR MaLR 1 364 0 879 53 9 0 chr11 43554317 43554430 -105229042 - L1PA6 LINE L1 -7 6147 6034 26 0 0 0 chr11 43554797 43554823 -105228649 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 43554981 43555003 -105228469 + AT_rich Low_complexity Low_complexity 1 22 0 250 355 41 0 chr11 43555068 43555189 -105228283 - L2 LINE L2 -6 3307 3182 225 0 0 0 chr11 43556115 43556140 -105227332 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 1685 116 35 0 chr11 43556149 43556408 -105227064 + L1PA15 LINE L1 5896 6163 -2 1571 200 17 0 chr11 43556490 43556835 -105226637 + L1MA9 LINE L1 5785 6135 -177 207 245 53 21 chr11 43557677 43557771 -105225701 + MIR SINE MIR 120 216 -46 1793 181 0 7 chr11 43558223 43558533 -105224939 - AluJb SINE Alu -1 311 4 251 294 51 51 chr11 43558543 43558720 -105224752 + L1MCc LINE L1 124 300 -6123 312 281 129 7 chr11 43559493 43559632 -105223840 + L1MC4 LINE L1 6604 6759 -1283 860 295 101 48 chr11 43559662 43560354 -105223118 + L1MC4a LINE L1 5326 6054 -1754 263 261 145 0 chr11 43560718 43560787 -105222685 + L1MD3 LINE L1 6668 6746 -1249 461 283 26 7 chr11 43560805 43560957 -105222515 + L1MC4 LINE L1 6856 7010 -1032 558 284 161 81 chr11 43561181 43561377 -105222095 + L1MC4 LINE L1 7099 7278 -764 3767 94 22 0 chr11 43561377 43561919 -105221553 + L1PA13 LINE L1 5610 6163 0 558 284 161 81 chr11 43561919 43562450 -105221022 + L1MC4 LINE L1 7278 7884 -158 327 163 100 0 chr11 43562958 43563038 -105220434 + MLT1J LTR MaLR 416 503 -8 583 257 12 46 chr11 43563114 43563307 -105220165 + MLT1D LTR MaLR 4 187 -350 240 247 53 106 chr11 43563632 43563802 -105219670 - MIR SINE MIR -30 232 72 213 305 38 57 chr11 43564691 43564796 -105218676 + MIR SINE MIR 3 105 -157 189 362 43 0 chr11 43565041 43565135 -105218337 + L2 LINE L2 2950 3047 -225 313 270 139 43 chr11 43565630 43565745 -105217727 - L2 LINE L2 0 3272 3147 222 217 43 0 chr11 43565833 43565879 -105217593 + L2 LINE L2 3261 3308 -5 1818 158 7 7 chr11 43566756 43567040 -105216432 + AluSq SINE Alu 1 284 -29 2297 245 85 5 chr11 43567076 43567679 -105215793 - MLT1E1 LTR MaLR -3 651 1 251 340 65 35 chr11 43568570 43568770 -105214702 + MLT1K LTR MaLR 198 403 -185 229 267 22 7 chr11 43568770 43568905 -105214567 + (TA)n Simple_repeat Simple_repeat 1 137 0 251 314 29 57 chr11 43569036 43569176 -105214296 + MLT1K LTR MaLR 446 581 -7 859 344 74 0 chr11 43569584 43569936 -105213536 + LTR33 LTR ERVL 2 379 -142 182 320 204 17 chr11 43570602 43570774 -105212698 + MIR SINE MIR 19 222 -40 816 200 12 0 chr11 43571574 43571739 -105211733 - AluSg/x SINE Alu 0 312 146 21 0 0 0 chr11 43571908 43571929 -105211543 + GC_rich Low_complexity Low_complexity 1 21 0 2155 110 13 7 chr11 43572543 43572853 -105210619 - AluSx SINE Alu 0 312 1 756 159 36 0 chr11 43573022 43573160 -105210312 - L1MA9 LINE L1 0 6312 6170 28 0 0 0 chr11 43573231 43573259 -105210213 + AT_rich Low_complexity Low_complexity 1 28 0 2166 98 14 0 chr11 43573851 43574136 -105209336 + AluSq SINE Alu 5 293 -20 261 308 56 56 chr11 43574895 43575038 -105208434 + MIR3 SINE MIR 38 180 -28 248 278 96 17 chr11 43575294 43575409 -105208063 + MIR SINE MIR 89 212 -50 240 219 16 16 chr11 43576333 43576397 -105207075 + (ATG)n Simple_repeat Simple_repeat 2 65 0 277 330 168 11 chr11 43576823 43577002 -105206470 + MIR SINE MIR 26 232 -30 369 0 0 0 chr11 43577002 43577017 -105206455 + (CA)n Simple_repeat Simple_repeat 1 56 0 369 0 0 0 chr11 43577017 43577058 -105206414 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr11 43577109 43577131 -105206341 + AT_rich Low_complexity Low_complexity 1 22 0 1962 157 11 14 chr11 43577136 43577492 -105205980 - THE1A LTR MaLR 0 355 1 11456 101 1 8 chr11 43577492 43579082 -105204390 - THE1A-int LTR MaLR 0 1580 1 1999 160 14 6 chr11 43579082 43579432 -105204040 - THE1A LTR MaLR 0 355 3 391 247 12 0 chr11 43580028 43580109 -105203363 + L2 LINE L2 3232 3313 0 207 170 0 0 chr11 43580939 43580986 -105202486 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 368 329 104 26 chr11 43583805 43584235 -105199237 + L1ME LINE L1 5057 5529 -773 1977 129 3 57 chr11 43584461 43584779 -105198693 - AluSx SINE Alu -11 301 1 311 256 207 15 chr11 43585699 43585902 -105197570 + L1ME LINE L1 5541 5782 -339 41 0 0 0 chr11 43586201 43586242 -105197230 + AT_rich Low_complexity Low_complexity 1 41 0 376 119 0 24 chr11 43586878 43586962 -105196510 + (TA)n Simple_repeat Simple_repeat 2 83 0 1067 159 5 15 chr11 43588934 43589129 -105194343 + AluSg/x SINE Alu 120 312 0 237 226 48 48 chr11 43589502 43589564 -105193908 - MLT1F LTR MaLR -480 62 1 2536 68 0 0 chr11 43589691 43590002 -105193470 + AluY SINE Alu 1 311 0 207 329 44 44 chr11 43590051 43590188 -105193284 - L2 LINE L2 -206 3066 2930 279 276 65 24 chr11 43590269 43590392 -105193080 - L2 LINE L2 -533 2781 2654 321 339 91 24 chr11 43590869 43591033 -105192439 + MIR SINE MIR 47 221 -41 576 346 21 4 chr11 43591033 43591267 -105192205 + MIR SINE MIR 2 239 -23 21 0 0 0 chr11 43591343 43591364 -105192108 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 43592792 43592822 -105190650 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr11 43592962 43592999 -105190473 + AT_rich Low_complexity Low_complexity 1 37 0 6481 68 24 0 chr11 43594368 43595970 -105187502 + L1PA7 LINE L1 4535 6148 -6 1160 139 19 14 chr11 43596163 43596378 -105187094 - Tigger1 DNA MER2_type -1560 858 643 1047 131 0 0 chr11 43596374 43596534 -105186938 + Tigger1 DNA MER2_type 1509 1668 -750 * 2041 150 18 2 chr11 43596535 43596934 -105186538 + Tigger1 DNA MER2_type 863 1353 -1065 3371 184 46 0 chr11 43596939 43597552 -105185920 - Tigger1 DNA MER2_type -1777 641 1 211 151 0 38 chr11 43598157 43598210 -105185262 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 2179 106 0 0 chr11 43598311 43598636 -105184836 + AluSc SINE Alu 1 325 0 1765 143 0 25 chr11 43598772 43599052 -105184420 - AluSx SINE Alu -39 273 1 246 30 0 0 chr11 43599053 43599086 -105184386 + L1MB3 LINE L1 6043 6075 -108 1126 119 12 6 chr11 43599086 43599254 -105184218 + THE1B LTR MaLR 1 169 -195 485 234 0 0 chr11 43599269 43599376 -105184096 + MER3 DNA MER1_type 62 168 -41 3090 215 44 7 chr11 43599376 43600195 -105183277 - L1MB3 LINE L1 -128 6055 5207 243 171 68 0 chr11 43600246 43600334 -105183138 + (TA)n Simple_repeat Simple_repeat 1 94 0 246 344 0 31 chr11 43601247 43601343 -105182129 + L2 LINE L2 3168 3260 -12 * 345 343 102 31 chr11 43601337 43601757 -105181715 - L2 LINE L2 -1 3312 2863 2211 112 0 0 chr11 43601781 43602076 -105181396 + AluY SINE Alu 1 295 -16 1700 256 64 74 chr11 43602211 43603913 -105179559 + L1ME3A LINE L1 4483 6168 -2 291 359 77 30 chr11 43604064 43604373 -105179099 - L2 LINE L2 -747 2567 2239 2067 118 17 0 chr11 43604373 43604662 -105178810 - AluSp SINE Alu -19 294 1 291 359 77 30 chr11 43604662 43604689 -105178783 - L2 LINE L2 -1075 2239 2215 4496 186 73 25 chr11 43604743 43605933 -105177539 + L1MA10 LINE L1 5086 6304 -30 473 343 22 19 chr11 43605968 43606236 -105177236 - L2 LINE L2 -1152 2162 1894 509 95 0 36 chr11 43606511 43606595 -105176877 + L1PA6 LINE L1 6067 6147 -7 34 24 0 0 chr11 43606821 43606862 -105176610 + AT_rich Low_complexity Low_complexity 1 41 0 251 313 34 41 chr11 43607051 43607198 -105176274 + MIR SINE MIR 117 262 0 298 343 152 14 chr11 43607474 43607684 -105175788 + MIR SINE MIR 17 255 -7 591 191 9 0 chr11 43607750 43607860 -105175612 - L1MC1 LINE L1 -12 6321 6211 21 36 0 0 chr11 43608580 43608608 -105174864 + AT_rich Low_complexity Low_complexity 1 28 0 * 528 365 28 8 chr11 43608588 43608843 -105174629 - MIR SINE MIR 0 262 3 23 0 0 0 chr11 43608994 43609017 -105174455 + AT_rich Low_complexity Low_complexity 1 23 0 1973 131 45 43 chr11 43609382 43609756 -105173716 - THE1C LTR MaLR 0 375 1 352 333 79 21 chr11 43610400 43610589 -105172883 + MIR SINE MIR 23 222 -40 373 302 138 5 chr11 43610664 43610853 -105172619 + MIR SINE MIR 49 262 0 352 242 311 11 chr11 43611043 43611233 -105172239 + MIR SINE MIR 8 254 -8 577 141 0 0 chr11 43611283 43611375 -105172097 - ALR/Alpha Satellite centromeric -23 149 58 290 356 17 0 chr11 43612564 43612679 -105170793 + L2 LINE L2 2728 2844 -470 638 234 23 79 chr11 43612679 43612803 -105170669 + MER5A DNA MER1_type 2 121 -68 2411 92 0 0 chr11 43612803 43613106 -105170366 - AluSc SINE Alu -6 303 1 638 234 23 79 chr11 43613106 43613167 -105170305 + MER5A DNA MER1_type 121 184 -5 893 291 39 70 chr11 43613185 43613667 -105169805 + L2 LINE L2 2846 3312 -1 447 253 129 35 chr11 43613873 43614075 -105169397 - MIR SINE MIR -37 225 5 296 250 25 12 chr11 43614518 43614598 -105168874 + MER5A DNA MER1_type 32 112 -77 597 228 95 13 chr11 43614666 43614824 -105168648 - MER5B DNA MER1_type -7 171 1 6042 46 10 15 chr11 43614875 43615653 -105167819 - L1PA5 LINE L1 -127 6027 5254 21 36 0 0 chr11 43616224 43616252 -105167220 + AT_rich Low_complexity Low_complexity 1 28 0 576 206 0 0 chr11 43617808 43617910 -105165562 - AluJo SINE Alu -24 288 187 * 660 179 0 0 chr11 43617909 43618021 -105165451 - AluJo SINE Alu -200 112 1 200 359 87 34 chr11 43618233 43618439 -105165033 + L2 LINE L2 3055 3271 -1 461 126 29 19 chr11 43618621 43618724 -105164748 + CT-rich Low_complexity Low_complexity 3 106 0 271 242 191 73 chr11 43619050 43619228 -105164244 - L1MEd LINE L1 -5396 723 525 189 370 58 7 chr11 43621617 43621755 -105161717 + L2 LINE L2 2945 3089 -224 231 213 64 0 chr11 43621866 43621913 -105161559 + L2 LINE L2 3258 3307 -6 22 0 0 0 chr11 43622036 43622058 -105161414 + AT_rich Low_complexity Low_complexity 1 22 0 699 35 0 0 chr11 43622672 43622758 -105160714 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 285 302 183 18 chr11 43622977 43623146 -105160326 + MIR SINE MIR 66 262 0 255 294 0 15 chr11 43623164 43623232 -105160240 - MIR SINE MIR -116 146 80 277 291 170 24 chr11 43623373 43623538 -105159934 - MIR SINE MIR -70 192 4 718 304 63 51 chr11 43624485 43624817 -105158655 - L2 LINE L2 -7 3306 2971 961 221 4 33 chr11 43624824 43625231 -105158241 + MLT1B LTR MaLR 12 458 -9 225 255 147 39 chr11 43625234 43625336 -105158136 - L2 LINE L2 -348 2966 2854 231 276 76 38 chr11 43625490 43625595 -105157877 - MIR SINE MIR -82 126 18 335 407 26 5 chr11 43627756 43627945 -105155527 + MIR3 SINE MIR 10 202 -6 321 292 127 91 chr11 43628012 43628372 -105155100 + L2 LINE L2 2906 3283 -30 2164 199 0 14 chr11 43628372 43628790 -105154682 + MLT2D LTR ERVL 3 414 0 321 292 127 91 chr11 43628790 43628823 -105154649 + L2 LINE L2 3283 3313 0 276 319 60 17 chr11 43628844 43628960 -105154512 - MIR3 SINE MIR -76 132 12 2070 136 0 3 chr11 43629553 43629863 -105153609 + AluSx SINE Alu 1 309 -3 780 141 14 0 chr11 43630147 43630289 -105153183 - L1P4 LINE L1 -669 5497 5354 2275 196 33 33 chr11 43630447 43630825 -105152647 - L1 LINE L1 -1388 4758 4378 2454 17 66 0 chr11 43630825 43631112 -105152360 - AluY SINE Alu -5 306 1 2275 196 33 33 chr11 43631112 43631331 -105152141 - L1 LINE L1 -1767 4379 4161 1294 109 0 16 chr11 43631685 43631877 -105151595 + MER30B DNA MER1_type 2 190 0 24 32 0 0 chr11 43632023 43632054 -105151418 + AT_rich Low_complexity Low_complexity 1 31 0 225 303 0 123 chr11 43632951 43633106 -105150366 + MIR SINE MIR 5 140 -122 203 356 148 9 chr11 43633357 43633472 -105150000 + MIR SINE MIR 30 160 -102 13347 163 37 8 chr11 43633860 43636204 -105147268 - Tigger1 DNA MER2_type 0 2418 6 243 0 0 0 chr11 43636307 43636334 -105147138 + (TA)n Simple_repeat Simple_repeat 1 27 0 2329 42 0 0 chr11 43636848 43637131 -105146341 - L1PA5 LINE L1 -11 6143 5861 342 0 0 0 chr11 43637383 43637421 -105146051 + (TA)n Simple_repeat Simple_repeat 2 39 0 4458 97 6 28 chr11 43638502 43638988 -105144484 - L1PA14 LINE L1 -3 6158 5691 1681 175 7 7 chr11 43638988 43639291 -105144181 - AluSx SINE Alu -9 303 1 4458 97 6 28 chr11 43639291 43639507 -105143965 - L1PA14 LINE L1 -470 5691 5472 677 89 10 10 chr11 43639564 43639665 -105143807 - L1PA14 LINE L1 -694 5467 5367 300 70 0 0 chr11 43640233 43640276 -105143196 + (TG)n Simple_repeat Simple_repeat 2 44 0 317 331 15 15 chr11 43640626 43640762 -105142710 + MIR SINE MIR 66 201 -61 371 305 107 15 chr11 43641013 43641144 -105142328 + MIR3 SINE MIR 40 182 -26 2519 69 0 0 chr11 43641215 43641518 -105141954 - AluY SINE Alu -8 303 1 220 308 77 0 chr11 43642293 43642397 -105141075 - MIR SINE MIR -92 170 59 484 290 49 90 chr11 43642507 43642917 -105140555 + LTR16B LTR ERVL 64 456 -8 2673 322 40 31 chr11 43643018 43644367 -105139105 + HERV16 LTR ERVL 37 1397 -3599 469 321 16 16 chr11 43644857 43645050 -105138422 + HERV16 LTR ERVL 4787 4979 -17 473 332 46 40 chr11 43645200 43645549 -105137923 + LTR16B LTR ERVL 97 447 -17 207 0 0 0 chr11 43645893 43645916 -105137556 + (T)n Simple_repeat Simple_repeat 1 23 0 277 321 66 28 chr11 43646444 43646550 -105136922 - MIR SINE MIR -117 145 36 1513 254 54 44 chr11 43646991 43647524 -105135948 + MLT1F1 LTR MaLR 31 567 0 241 265 0 15 chr11 43648495 43648563 -105134909 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 242 309 32 32 chr11 43648581 43648707 -105134765 + MIR SINE MIR 121 246 -16 21 36 0 0 chr11 43648782 43648810 -105134662 + AT_rich Low_complexity Low_complexity 1 28 0 216 226 32 0 chr11 43648986 43649079 -105134393 + (TA)n Simple_repeat Simple_repeat 2 97 0 303 271 90 45 chr11 43649082 43649259 -105134213 + L1ME4a LINE L1 5935 6119 -2 24 32 0 0 chr11 43649871 43649902 -105133570 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 43650297 43650319 -105133153 + AT_rich Low_complexity Low_complexity 1 22 0 265 341 7 58 chr11 43650451 43650589 -105132883 - MIR SINE MIR -60 148 18 197 362 19 71 chr11 43652526 43652736 -105130736 + L2 LINE L2 2892 3090 -182 207 323 0 0 chr11 43652813 43652875 -105130597 + L2 LINE L2 3210 3271 -1 269 284 102 40 chr11 43652907 43653083 -105130389 + MIR SINE MIR 76 262 0 838 229 5 10 chr11 43653617 43653822 -105129650 - MER115 DNA AcHobo 0 693 490 356 346 34 6 chr11 43654054 43654233 -105129239 - MER115 DNA AcHobo -502 191 8 394 284 0 11 chr11 43654535 43654630 -105128842 + MER81 DNA DNA 21 114 0 231 410 42 24 chr11 43655867 43656033 -105127439 + L2 LINE L2 3104 3272 0 522 209 36 0 chr11 43656486 43656596 -105126876 + MER94 DNA DNA 1 114 -20 767 201 28 0 chr11 43656676 43656820 -105126652 + MER20B DNA MER1_type 17 164 -55 2412 62 3 0 chr11 43656956 43657248 -105126224 - AluY SINE Alu -2 309 17 315 49 0 0 chr11 43657259 43657300 -105126172 + (T)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr11 43657792 43657818 -105125654 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr11 43657890 43657915 -105125557 + AT_rich Low_complexity Low_complexity 1 25 0 451 270 13 63 chr11 43658399 43658558 -105124914 - MER63A DNA MER1_type 0 210 60 21 36 0 0 chr11 43659307 43659335 -105124137 + AT_rich Low_complexity Low_complexity 1 28 0 2369 69 0 22 chr11 43659852 43660170 -105123302 + AluY SINE Alu 1 311 0 3324 277 43 26 chr11 43662031 43663143 -105120329 + L1MD1 LINE L1 13 1143 -5397 785 258 26 4 chr11 43663169 43663436 -105120036 + L1MD1 LINE L1 5328 5600 -940 3088 203 20 10 chr11 43663440 43664131 -105119341 + L1MD1 LINE L1 5938 6635 -1 208 121 0 0 chr11 43664415 43664448 -105119024 + (CA)n Simple_repeat Simple_repeat 2 34 0 545 243 97 113 chr11 43664458 43665266 -105118206 + LTR50 LTR ERVL 1 795 0 2238 103 0 0 chr11 43665722 43666023 -105117449 - AluY SINE Alu -10 301 1 4885 75 181 4 chr11 43667885 43668669 -105114803 - MER11A LTR ERVK -1 1265 343 528 86 38 19 chr11 43668769 43668874 -105114598 - MER11A LTR ERVK -1159 107 1 1586 158 118 31 chr11 43669151 43669607 -105113865 + LTR54B LTR ERV1 1 496 -2 214 208 19 19 chr11 43670320 43670373 -105113099 + GA-rich Low_complexity Low_complexity 2 54 0 234 219 70 102 chr11 43670515 43670585 -105112887 - MIR SINE MIR -12 250 184 1267 192 69 30 chr11 43670585 43670992 -105112480 + LTR37A LTR ERV1 3 425 -1 234 219 70 102 chr11 43670992 43671049 -105112423 - MIR SINE MIR -78 184 127 236 314 14 0 chr11 43671081 43671151 -105112321 - L2 LINE L2 -13 3259 3189 293 207 98 12 chr11 43671409 43671491 -105111981 - MIR SINE MIR -64 198 110 181 368 23 11 chr11 43671557 43671644 -105111828 - MIR SINE MIR -114 148 61 1469 171 115 9 chr11 43671796 43672135 -105111337 + THE1C LTR MaLR 1 375 0 9607 127 12 30 chr11 43672135 43673738 -105109734 + THE1C-int LTR MaLR 1 1575 -5 1896 148 52 25 chr11 43673742 43674107 -105109365 + THE1C LTR MaLR 1 375 0 1714 143 195 19 chr11 43674735 43675099 -105108373 - MSTA LTR MaLR 0 428 1 212 283 19 38 chr11 43675196 43675302 -105108170 + CT-rich Low_complexity Low_complexity 74 177 0 236 351 42 30 chr11 43676039 43676204 -105107268 - MIR SINE MIR -50 212 46 487 158 21 11 chr11 43676382 43676477 -105106995 + MER4A LTR ERV1 3 98 -566 1463 148 19 78 chr11 43676477 43676842 -105106630 + MER4A LTR ERV1 263 664 0 2512 175 7 13 chr11 43677374 43677834 -105105638 - LTR26B LTR ERV1 0 531 75 6501 186 140 40 chr11 43677834 43679429 -105104043 + MER52A LTR ERV1 1 1755 0 487 128 0 0 chr11 43679429 43679507 -105103965 - LTR26B LTR ERV1 -453 78 1 864 251 81 80 chr11 43680551 43680714 -105102758 + MER20B DNA MER1_type 199 360 -423 7398 34 5 0 chr11 43680714 43681606 -105101866 + L1PA4 LINE L1 5259 6154 -1 864 251 81 80 chr11 43681606 43682008 -105101464 + MER20B DNA MER1_type 360 765 -18 475 288 7 20 chr11 43682603 43682756 -105100716 + LTR52 LTR ERVL 1 151 -270 1755 211 42 26 chr11 43682764 43683219 -105100253 + MLT1C LTR MaLR 6 467 0 766 231 43 21 chr11 43683251 43683485 -105099987 + LTR52 LTR ERVL 169 407 -14 2530 89 47 47 chr11 43683710 43684138 -105099334 + L1MA1 LINE L1 5875 6302 0 196 380 60 27 chr11 43684998 43685182 -105098290 + MIR3 SINE MIR 14 203 -5 346 326 84 31 chr11 43685869 43686130 -105097342 + L2 LINE L2 2682 2956 -358 287 304 58 22 chr11 43686302 43686440 -105097032 + L2 LINE L2 3167 3309 -4 800 285 16 27 chr11 43686444 43686700 -105096772 - MIR SINE MIR 0 262 10 229 301 44 35 chr11 43686698 43686811 -105096661 - MIR3 SINE MIR -85 123 10 * 36 0 0 0 chr11 43687649 43687685 -105095787 + AT_rich Low_complexity Low_complexity 1 36 0 240 167 93 0 chr11 43687842 43687896 -105095576 + MIR3 SINE MIR 125 183 -25 21 36 0 0 chr11 43688630 43688658 -105094814 + AT_rich Low_complexity Low_complexity 1 28 0 423 283 96 28 chr11 43689722 43689899 -105093573 - MIR SINE MIR -71 191 3 2423 116 8 6 chr11 43689947 43690310 -105093162 - THE1B LTR MaLR 0 364 1 1057 305 78 42 chr11 43690459 43691213 -105092259 + L2 LINE L2 2521 3313 0 318 26 0 0 chr11 43691941 43691980 -105091492 + (GA)n Simple_repeat Simple_repeat 2 40 0 2480 28 0 3 chr11 43692883 43693198 -105090274 + AluY SINE Alu 1 314 0 338 353 0 8 chr11 43693950 43694072 -105089400 - MIR SINE MIR -94 168 48 389 260 33 19 chr11 43695397 43695525 -105087947 - MIR SINE MIR -64 144 38 194 324 130 19 chr11 43696101 43696209 -105087263 + L2 LINE L2 3142 3261 -11 234 289 107 33 chr11 43696690 43696746 -105086726 + MIR SINE MIR 25 75 -187 611 37 25 0 chr11 43696746 43696827 -105086645 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2128 102 0 4 chr11 43696829 43697104 -105086368 - AluSx SINE Alu -32 280 7 234 289 107 33 chr11 43697104 43697165 -105086307 + MIR SINE MIR 75 154 -108 23 0 0 0 chr11 43697220 43697243 -105086229 + AT_rich Low_complexity Low_complexity 1 23 0 1398 219 3 64 chr11 43698008 43698337 -105085135 + AluJo SINE Alu 1 309 -3 2609 39 0 10 chr11 43699049 43699359 -105084113 - AluY SINE Alu -4 307 1 1078 262 57 6 chr11 43700919 43701270 -105082202 + L2 LINE L2 2328 2696 -618 1031 259 57 59 chr11 43701342 43701767 -105081705 + L2 LINE L2 2890 3313 0 1395 167 11 7 chr11 43701982 43702257 -105081215 - AluY SINE Alu -14 297 22 282 73 0 0 chr11 43702274 43702315 -105081157 + (T)n Simple_repeat Simple_repeat 1 41 0 258 296 8 88 chr11 43702947 43703072 -105080400 + L2 LINE L2 3192 3306 -7 1642 176 48 0 chr11 43703200 43703495 -105079977 + AluSx SINE Alu 1 309 -3 189 74 0 0 chr11 43703593 43703620 -105079852 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 475 246 7 18 chr11 43703620 43703796 -105079676 - L1MB7 LINE L1 -9 6157 5993 409 176 0 0 chr11 43703962 43704030 -105079442 - AluSg/x SINE Alu -39 270 203 261 0 0 0 chr11 43704203 43704232 -105079240 + (TG)n Simple_repeat Simple_repeat 1 29 0 1684 145 49 78 chr11 43704268 43704654 -105078818 - THE1C LTR MaLR 0 375 1 215 156 0 22 chr11 43705607 43705652 -105077820 + T-rich Low_complexity Low_complexity 5 48 0 2358 90 0 3 chr11 43705765 43706076 -105077396 + AluSg SINE Alu 1 310 0 2244 100 13 3 chr11 43706657 43706958 -105076514 - AluSq SINE Alu -9 304 1 1376 170 17 7 chr11 43706965 43707253 -105076219 - L1MA4 LINE L1 -2 6298 6008 636 255 7 7 chr11 43707463 43707616 -105075856 + MER45 DNA AcHobo 1415 1567 -14 252 0 0 0 chr11 43708319 43708347 -105075125 + (TA)n Simple_repeat Simple_repeat 2 29 0 625 218 11 75 chr11 43708348 43708536 -105074936 - MER20 DNA MER1_type -43 176 1 2171 126 0 19 chr11 43708791 43709108 -105074364 + AluSx SINE Alu 1 311 -1 42439 38 21 1 chr11 43709614 43715642 -105067830 - L1PA2 LINE L1 -1 6154 5 259 324 93 0 chr11 43715657 43715765 -105067707 - MIR SINE MIR -66 196 79 1170 271 43 6 chr11 43715896 43716221 -105067251 + MER93a LTR ERV1 65 401 -1 773 233 6 45 chr11 43716457 43716633 -105066839 - MER5A DNA MER1_type -19 170 2 223 326 67 11 chr11 43716725 43716863 -105066609 - MIR SINE MIR -62 146 2 231 309 43 14 chr11 43717512 43717651 -105065821 + (CATATA)n Simple_repeat Simple_repeat 3 145 0 306 339 40 24 chr11 43717723 43717847 -105065625 + MIR3 SINE MIR 51 176 -32 23 0 0 0 chr11 43717998 43718021 -105065451 + AT_rich Low_complexity Low_complexity 1 23 0 565 308 14 24 chr11 43718361 43718572 -105064900 - MIR SINE MIR -6 256 48 303 363 137 0 chr11 43718650 43718840 -105064632 - MIR SINE MIR -6 256 41 218 192 19 0 chr11 43719640 43719692 -105063780 + CT-rich Low_complexity Low_complexity 2 54 0 2356 183 2 12 chr11 43720447 43720938 -105062534 - L1MA3 LINE L1 -1 6304 5819 852 153 20 0 chr11 43720939 43721089 -105062383 + L1MA3 LINE L1 5669 5821 -479 246 288 0 0 chr11 43722590 43722649 -105060823 + MIR SINE MIR 202 260 -2 651 315 98 65 chr11 43723097 43723307 -105060165 + L2 LINE L2 2806 3008 -305 1647 171 18 14 chr11 43723307 43723593 -105059879 + AluJo SINE Alu 1 287 -25 651 315 98 65 chr11 43723593 43723874 -105059598 + L2 LINE L2 3008 3313 0 499 359 22 0 chr11 43724350 43724581 -105058891 - MIR SINE MIR -14 248 13 312 339 1 37 chr11 43725553 43725719 -105057753 - MER5A DNA MER1_type -16 164 2 23 0 0 0 chr11 43725942 43725965 -105057507 + AT_rich Low_complexity Low_complexity 1 23 0 2230 109 0 19 chr11 43726048 43726360 -105057112 + AluSc SINE Alu 1 306 -3 203 260 57 24 chr11 43726677 43726800 -105056672 + GA-rich Low_complexity Low_complexity 4 130 0 303 303 106 8 chr11 43726864 43726996 -105056476 - MER69A DNA AcHobo -31 146 2 24 0 0 0 chr11 43728479 43728503 -105054969 + AT_rich Low_complexity Low_complexity 1 24 0 228 317 10 10 chr11 43728544 43728645 -105054827 + GA-rich Low_complexity Low_complexity 2 102 0 902 306 75 65 chr11 43729141 43729791 -105053681 + L1M3d LINE L1 1 657 -5234 619 312 72 8 chr11 43730165 43730540 -105052932 + L1M3d LINE L1 691 1089 -4802 * 2474 242 113 20 chr11 43730533 43731022 -105052450 + L1M4c LINE L1 1260 1702 -4682 3899 179 23 29 chr11 43731022 43731812 -105051660 + LTR1 LTR ERV1 1 785 0 2474 242 113 20 chr11 43731812 43732411 -105051061 + L1M4c LINE L1 1702 2449 -3935 2252 218 31 8 chr11 43732539 43733057 -105050415 + L1MB3 LINE L1 5526 6055 -128 485 234 0 0 chr11 43733057 43733164 -105050308 - MER3 DNA MER1_type -41 168 62 1126 119 12 6 chr11 43733179 43733347 -105050125 - THE1B LTR MaLR -195 169 1 246 30 0 0 chr11 43733347 43733380 -105050092 - L1MB3 LINE L1 -108 6075 6043 1765 143 0 25 chr11 43733381 43733661 -105049811 + AluSx SINE Alu 1 273 -39 2211 98 3 25 chr11 43733804 43734120 -105049352 - AluSc SINE Alu 0 309 1 211 151 0 38 chr11 43734221 43734274 -105049198 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 1226 302 103 30 chr11 43735474 43736116 -105047356 - MER115 DNA AcHobo 0 4031 1 821 311 29 0 chr11 43736122 43736360 -105047112 + MIR SINE MIR 15 259 -3 1996 116 3 11 chr11 43736518 43736826 -105046646 - AluSg SINE Alu 0 306 1 344 256 15 53 chr11 43737185 43737318 -105046154 + L1M4c LINE L1 2690 2817 -3565 2400 77 0 0 chr11 43739838 43740148 -105043324 - AluY SINE Alu -1 310 1 24 0 0 0 chr11 43740316 43740340 -105043132 + AT_rich Low_complexity Low_complexity 1 24 0 371 337 136 61 chr11 43740543 43740732 -105042740 + L2 LINE L2 2823 2997 -316 467 72 0 14 chr11 43740732 43740801 -105042671 + (TG)n Simple_repeat Simple_repeat 2 69 0 371 337 136 61 chr11 43740801 43741068 -105042404 + L2 LINE L2 2997 3313 0 1803 193 5 27 chr11 43741152 43741525 -105041947 - MLT1A1 LTR MaLR 0 365 1 607 320 36 5 chr11 43743870 43744089 -105039383 - MIR SINE MIR -21 241 16 284 302 0 0 chr11 43744202 43744265 -105039207 + MER69 DNA AcHobo 4 66 -2460 328 358 33 70 chr11 43744587 43744830 -105038642 + L2 LINE L2 3033 3266 -6 329 219 16 0 chr11 43745437 43745501 -105037971 - MIR3 SINE MIR 0 208 144 1431 260 70 41 chr11 43746111 43746650 -105036822 + MLT1E LTR MaLR 39 593 0 266 401 13 32 chr11 43746679 43746836 -105036636 + MER5B DNA MER1_type 1 154 -24 434 198 12 0 chr11 43847639 43847720 -104935752 - AluSg/x SINE Alu -19 293 212 1126 101 0 0 chr11 43847720 43847869 -104935603 + AluSg/x SINE Alu 164 312 0 1181 96 0 0 chr11 43848150 43848296 -104935176 + AluSq/x SINE Alu 1 146 -166 1203 169 19 72 chr11 43848396 43848703 -104934769 - MLT1B LTR MaLR -94 296 6 1688 195 16 10 chr11 43849776 43850084 -104933388 - AluJb SINE Alu -2 310 1 228 231 39 77 chr11 43850084 43850214 -104933258 + HAL1 LINE L1 811 935 -1572 833 292 71 26 chr11 43850220 43850600 -104932872 + HAL1 LINE L1 880 1276 -1231 667 154 54 31 chr11 43850663 43850793 -104932679 + FLAM_C SINE Alu 6 138 -5 9076 127 33 2 chr11 43850924 43852290 -104931182 - L1P LINE L1 -3594 2552 1145 9962 54 4 5 chr11 43852481 43853785 -104929687 + L1P LINE L1 3 1305 -4841 7577 32 0 0 chr11 43853886 43854895 -104928577 + L1PA4 LINE L1 5171 6179 0 209 320 164 0 chr11 43855761 43855889 -104927583 + MIR SINE MIR 39 187 -75 293 290 47 28 chr11 43855909 43856016 -104927456 - MER91C DNA MER1_type -31 109 1 210 158 0 0 chr11 43856529 43856567 -104926905 + (TA)n Simple_repeat Simple_repeat 2 39 0 230 273 118 18 chr11 43856858 43856968 -104926504 - MIR3 SINE MIR -81 127 7 21 0 0 0 chr11 43857165 43857186 -104926286 + AT_rich Low_complexity Low_complexity 1 21 0 190 206 27 96 chr11 43857343 43857416 -104926056 - L3 LINE CR1 -5 1572 1505 330 350 32 0 chr11 43857423 43857563 -104925909 + MIR SINE MIR 45 187 -62 303 327 123 39 chr11 43857587 43857847 -104925625 + L2 LINE L2 2990 3271 -42 532 330 40 16 chr11 43858149 43858452 -104925020 - L3 LINE CR1 -80 1497 1188 1395 235 56 124 chr11 43858880 43859086 -104924386 + MLT1E2 LTR MaLR 1 219 -407 1587 215 0 7 chr11 43859086 43859384 -104924088 - AluJo SINE Alu -16 296 1 1395 235 56 124 chr11 43859384 43859786 -104923686 + MLT1E2 LTR MaLR 219 563 -63 915 123 0 0 chr11 43859786 43859932 -104923540 - L1MA4 LINE L1 -12 6288 6143 1395 235 56 124 chr11 43859932 43859985 -104923487 + MLT1E2 LTR MaLR 563 618 -8 2043 132 3 0 chr11 43860899 43861186 -104922286 - AluSx SINE Alu -19 293 6 801 306 56 14 chr11 43861383 43861743 -104921729 + MLT1I LTR MaLR 1 375 -34 378 231 0 0 chr11 43862121 43862212 -104921260 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1280 188 26 16 chr11 43862552 43862856 -104920616 + L1MA4 LINE L1 5988 6294 -6 720 157 27 14 chr11 43862712 43862859 -104920613 + L1MA5 LINE L1 6149 6297 -3 213 39 0 0 chr11 43863190 43863216 -104920256 + (TC)n Simple_repeat Simple_repeat 1 26 0 644 311 16 69 chr11 43863351 43863656 -104919816 + MLT1I LTR MaLR 110 398 -11 218 324 43 36 chr11 43863710 43863849 -104919623 + MIR SINE MIR 11 150 -112 275 338 0 0 chr11 43863852 43863920 -104919552 - L2 LINE L2 -17 3296 3229 305 310 63 19 chr11 43864388 43864546 -104918926 + L1MC/D LINE L1 5325 5489 -2319 407 180 34 0 chr11 43865160 43865249 -104918223 + AluS SINE Alu 1 92 -220 40 21 0 0 chr11 43866181 43866228 -104917244 + AT_rich Low_complexity Low_complexity 1 47 0 226 260 0 0 chr11 43866472 43866522 -104916950 - MIR SINE MIR 0 262 213 27 49 0 0 chr11 43866600 43866641 -104916831 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 43867093 43867114 -104916358 + AT_rich Low_complexity Low_complexity 1 21 0 556 176 0 0 chr11 43867235 43867337 -104916135 + L1PB4 LINE L1 6053 6154 -2 1231 41 0 0 chr11 43867537 43867684 -104915788 - AluY SINE Alu 0 311 165 559 327 93 14 chr11 43867919 43868274 -104915198 - LTR33 LTR ERVL -8 513 131 195 42 0 0 chr11 43869589 43869613 -104913859 + (TG)n Simple_repeat Simple_repeat 2 25 0 303 317 98 24 chr11 43870174 43870297 -104913175 - L2 LINE L2 0 3313 3182 227 277 12 48 chr11 43870833 43870916 -104912556 - L2 LINE L2 -76 3237 3158 625 322 140 24 chr11 43872483 43872940 -104910532 + L2 LINE L2 1974 2483 -831 408 269 0 106 chr11 43872929 43873156 -104910316 + L2 LINE L2 3101 3303 -10 * 1882 180 0 6 chr11 43873333 43873660 -104909812 + MER7A DNA MER2_type 2 324 -22 202 263 220 5 chr11 43873760 43873854 -104909618 + MIR SINE MIR 42 154 -68 468 0 0 0 chr11 43873950 43874002 -104909470 + (TA)n Simple_repeat Simple_repeat 1 52 0 618 86 11 0 chr11 43874272 43874365 -104909107 - AluY SINE Alu -11 300 207 432 0 0 0 chr11 43875157 43875205 -104908267 + (CA)n Simple_repeat Simple_repeat 2 49 0 9549 148 32 10 chr11 43875205 43876849 -104906623 + Tigger1 DNA MER2_type 10 1688 -730 1224 118 110 28 chr11 43876850 43877104 -104906368 + L1MA2 LINE L1 6030 6304 0 27 0 0 0 chr11 43877104 43877131 -104906341 + AT_rich Low_complexity Low_complexity 1 27 0 851 174 0 0 chr11 43877132 43877287 -104906185 + Tigger1 DNA MER2_type 1683 1837 -581 3264 143 27 38 chr11 43878923 43879386 -104904086 + Tigger1 DNA MER2_type 1820 2277 -141 2212 99 0 0 chr11 43879386 43879705 -104903767 + AluSx SINE Alu 1 319 0 3264 143 27 38 chr11 43879705 43879842 -104903630 + Tigger1 DNA MER2_type 2277 2414 -4 186 43 0 0 chr11 43879844 43879867 -104903605 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 204 40 0 0 chr11 43879866 43879891 -104903581 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 254 95 16 chr11 43882019 43882082 -104901390 - L2 LINE L2 -4 3268 3201 280 363 22 0 chr11 43882911 43883046 -104900426 - MIR SINE MIR -71 191 54 39102 57 2 0 chr11 43883722 43888653 -104894819 + L1P LINE L1 2 4940 -1206 1169 190 31 27 chr11 43888795 43889053 -104894419 + AluJo SINE Alu 35 293 -19 1083 184 5 49 chr11 43889055 43889278 -104894194 - MER46A DNA MER2_type -22 214 2 534 178 0 0 chr11 43889699 43889800 -104893672 + AluSq/x SINE Alu 11 111 -201 1980 147 11 38 chr11 43890129 43890497 -104892975 - THE1B LTR MaLR -6 358 1 3062 142 8 17 chr11 43890497 43891020 -104892452 - THE1B-int LTR MaLR 0 1580 1063 1626 205 84 15 chr11 43893144 43893548 -104889924 + L1MB7 LINE L1 5560 5991 -193 1004 206 0 0 chr11 43893588 43893787 -104889685 - AluSg/x SINE Alu -9 303 105 881 241 236 21 chr11 43894001 43894387 -104889085 + MLT1H LTR MaLR 37 505 -44 567 289 25 41 chr11 43896259 43896456 -104887016 - MIR SINE MIR -6 256 63 840 297 41 19 chr11 43897435 43897704 -104885768 + LTR33 LTR ERVL 1 275 -246 215 280 53 0 chr11 43898210 43898285 -104885187 + L2 LINE L2 2891 2969 -303 411 289 31 8 chr11 43898405 43898533 -104884939 + L2 LINE L2 3140 3270 -2 231 152 0 0 chr11 43898533 43898579 -104884893 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 238 294 92 9 chr11 43898875 43898984 -104884488 - MIR SINE MIR -11 251 134 186 133 0 0 chr11 43899509 43899539 -104883933 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 193 22 28 chr11 43899736 43899917 -104883555 + MLT1C LTR MaLR 1 180 -287 678 206 28 14 chr11 43899915 43900056 -104883416 + MLT1C LTR MaLR 317 459 -8 * 1303 192 3 85 chr11 43900164 43900502 -104882970 + AluJo SINE Alu 2 314 0 1197 224 46 16 chr11 43900506 43900810 -104882662 - MER4D LTR ERV1 -42 861 549 1505 171 14 45 chr11 43900842 43901134 -104882338 - MER49 LTR ERV1 -640 283 1 258 222 56 48 chr11 43902024 43902150 -104881322 - L1ME LINE L1 -222 5899 5773 22 88 0 0 chr11 43902176 43902233 -104881239 + AT_rich Low_complexity Low_complexity 1 57 0 860 128 21 0 chr11 43902419 43902560 -104880912 - MER41B LTR ERV1 0 635 492 504 302 104 9 chr11 43902702 43902924 -104880548 - MIR SINE MIR -18 244 2 21 0 0 0 chr11 43903436 43903457 -104880015 + AT_rich Low_complexity Low_complexity 1 21 0 503 247 43 21 chr11 43903993 43904179 -104879293 - L1MC5 LINE L1 -44 7917 7728 21 71 0 0 chr11 43904814 43904856 -104878616 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr11 43905925 43905951 -104877521 + (CA)n Simple_repeat Simple_repeat 1 26 0 507 300 185 20 chr11 43905960 43906263 -104877209 - L2 LINE L2 -33 3280 2928 182 324 216 0 chr11 43907751 43907853 -104875619 - L2 LINE L2 -1 3271 3148 529 304 242 22 chr11 43908581 43909201 -104874271 + L2 LINE L2 2546 3313 0 446 341 43 46 chr11 43909620 43909867 -104873605 - MIR SINE MIR -3 259 11 372 276 113 41 chr11 43910274 43910358 -104873114 - MIR SINE MIR -6 256 180 3841 152 24 68 chr11 43910358 43911179 -104872293 - LTR1 LTR ERV1 0 785 1 372 276 113 41 chr11 43911179 43911315 -104872157 - MIR SINE MIR -82 180 20 24 106 0 0 chr11 43912316 43912410 -104871062 + AT_rich Low_complexity Low_complexity 1 94 0 22 80 0 0 chr11 43913076 43913126 -104870346 + AT_rich Low_complexity Low_complexity 1 50 0 2315 111 5 72 chr11 43913126 43913514 -104869958 + THE1B LTR MaLR 1 362 -2 567 58 0 0 chr11 43913516 43913585 -104869887 + THE1B-int LTR MaLR 1 69 -1511 443 319 14 48 chr11 43913685 43913755 -104869717 + LTR33 LTR ERVL 315 386 -135 1975 150 132 8 chr11 43913755 43914134 -104869338 + MSTA LTR MaLR 1 426 -2 443 319 14 48 chr11 43914134 43914270 -104869202 + LTR33 LTR ERVL 386 514 -7 24 0 0 0 chr11 43915525 43915549 -104867923 + AT_rich Low_complexity Low_complexity 1 24 0 266 314 44 7 chr11 43915684 43915821 -104867651 + MER103 DNA DNA 6 147 -19 27 49 0 0 chr11 43915913 43915954 -104867518 + AT_rich Low_complexity Low_complexity 1 41 0 505 229 0 0 chr11 43915957 43916053 -104867419 - U6 snRNA snRNA -11 96 1 298 345 35 30 chr11 43916097 43916300 -104867172 - L3 LINE CR1 -22 1555 1352 2599 38 0 22 chr11 43916301 43916617 -104866855 - AluY SINE Alu -2 309 1 230 366 54 21 chr11 43916749 43916842 -104866630 - MIR3 SINE MIR -31 177 82 375 288 34 34 chr11 43917105 43917251 -104866221 + MIR SINE MIR 53 198 -64 29 28 0 0 chr11 43917253 43917289 -104866183 + AT_rich Low_complexity Low_complexity 1 36 0 385 309 87 19 chr11 43919558 43919765 -104863707 - MLT1J LTR MaLR -290 221 1 480 301 21 38 chr11 43920734 43920920 -104862552 + MIR SINE MIR 5 187 -75 1432 112 35 46 chr11 43921141 43921426 -104862046 + L1MA8 LINE L1 6009 6290 -1 324 0 0 0 chr11 43922339 43922375 -104861097 + (TG)n Simple_repeat Simple_repeat 2 37 0 775 251 27 11 chr11 43922661 43922844 -104860628 + MER20 DNA MER1_type 32 217 -2 375 202 0 0 chr11 43923273 43923357 -104860115 + (TA)n Simple_repeat Simple_repeat 1 84 0 7298 36 3 21 chr11 43923357 43924475 -104858997 - L1PA5 LINE L1 -12 6142 5033 218 384 87 11 chr11 43924673 43924858 -104858614 - L2 LINE L2 -785 2529 2331 1020 196 51 28 chr11 43925689 43926000 -104857472 - MLT1B LTR MaLR 0 390 15 396 263 102 81 chr11 43926066 43926447 -104857025 + L1MEd LINE L1 732 1120 -4999 288 273 81 73 chr11 43926524 43926784 -104856688 + L1MEd LINE L1 1254 1603 -887 235 183 33 0 chr11 43926812 43926872 -104856600 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 188 111 28 0 chr11 43926980 43927016 -104856456 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 891 176 33 0 chr11 43927472 43927625 -104855847 + FRAM SINE Alu 13 170 -6 298 285 93 36 chr11 43927973 43928166 -104855306 - L2 LINE L2 -1293 2021 1818 395 367 115 14 chr11 43928241 43928346 -104855126 - L2 LINE L2 -1479 1835 1742 324 0 0 0 chr11 43928346 43928382 -104855090 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 367 115 14 chr11 43928382 43928701 -104854771 - L2 LINE L2 -1572 1742 1368 23 78 0 0 chr11 43929438 43929489 -104853983 + AT_rich Low_complexity Low_complexity 1 51 0 908 119 0 0 chr11 43929489 43929607 -104853865 - FLAM_C SINE Alu -25 118 1 3957 92 8 28 chr11 43929674 43930292 -104853180 - L1MA2 LINE L1 0 6304 5699 194 182 114 125 chr11 43931581 43931669 -104851803 + L2 LINE L2 3186 3272 0 601 278 23 6 chr11 43932029 43932202 -104851270 - MIR SINE MIR 0 262 87 240 35 0 0 chr11 43932264 43932293 -104851179 + (T)n Simple_repeat Simple_repeat 1 29 0 227 267 67 33 chr11 43932812 43932902 -104850570 - MIR SINE MIR -152 110 18 3260 92 20 14 chr11 43933416 43933906 -104849566 - L1P4 LINE L1 -390 5773 5281 1379 123 5 0 chr11 43933906 43934116 -104849356 + L1PA13 LINE L1 5952 6163 0 364 277 9 27 chr11 43934185 43934297 -104849175 + L2 LINE L2 3204 3313 0 315 49 0 0 chr11 43934535 43934576 -104848896 + (TG)n Simple_repeat Simple_repeat 2 42 0 551 285 67 6 chr11 43934762 43934941 -104848531 + MIR SINE MIR 73 262 0 2474 55 0 13 chr11 43936027 43936334 -104847138 + AluY SINE Alu 1 303 -8 194 350 30 127 chr11 43936845 43937082 -104846390 - L2 LINE L2 -1 3271 3058 250 218 115 0 chr11 43937170 43937248 -104846224 - L1ME LINE L1 -266 5855 5769 434 299 22 0 chr11 43937267 43937401 -104846071 - L1PB4 LINE L1 -24 6132 5996 372 340 78 5 chr11 43937402 43937608 -104845864 - L1ME LINE L1 -341 5780 5560 223 286 8 79 chr11 43937649 43937775 -104845697 + MIR SINE MIR 71 187 -75 300 369 25 19 chr11 43938984 43939144 -104844328 + MIR SINE MIR 14 174 -88 180 284 14 40 chr11 43940705 43940779 -104842693 - MIR SINE MIR -64 198 127 663 316 103 28 chr11 43941433 43941822 -104841650 + MLT1J LTR MaLR 1 418 -93 241 342 72 0 chr11 43941840 43941951 -104841521 - MIR SINE MIR -58 204 86 201 39 0 0 chr11 43942187 43942213 -104841259 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 184 175 53 0 chr11 43942217 43942274 -104841198 + GA-rich Low_complexity Low_complexity 2 61 0 466 339 27 5 chr11 43943002 43943188 -104840284 + MIR SINE MIR 14 203 -59 6760 161 204 30 chr11 43943188 43944683 -104838789 - MER52A LTR ERV1 0 1755 1 2361 319 85 30 chr11 43946174 43947052 -104836420 + L2 LINE L2 1692 2703 -610 2511 61 0 0 chr11 43947052 43947349 -104836123 - AluY SINE Alu -14 297 1 2361 319 85 30 chr11 43947349 43947951 -104835521 + L2 LINE L2 2703 3270 -43 1787 108 4 23 chr11 43947955 43948214 -104835258 + AluSx SINE Alu 59 312 0 253 208 19 0 chr11 43948669 43948722 -104834750 - MER67D LTR ERV1 -29 485 432 2538 198 62 28 chr11 43949685 43950144 -104833328 + L1MB7 LINE L1 5540 6027 -157 2177 131 0 0 chr11 43950144 43950449 -104833023 - AluSx SINE Alu -7 305 1 2538 198 62 28 chr11 43950449 43950605 -104832867 + L1MB7 LINE L1 6027 6176 -8 231 36 0 0 chr11 43950615 43950643 -104832829 + (TA)n Simple_repeat Simple_repeat 2 29 0 319 252 76 42 chr11 43950696 43950815 -104832657 - L1ME4a LINE L1 -244 5877 5755 * 349 217 48 12 chr11 43950812 43950895 -104832577 - L1MC4 LINE L1 -1340 6702 6617 2248 59 0 62 chr11 43950895 43951202 -104832270 - AluY SINE Alu -20 291 4 311 295 174 0 chr11 43952558 43952707 -104830765 - MIR SINE MIR -40 222 48 2520 81 43 124 chr11 43952767 43953250 -104830222 + L1PA11 LINE L1 5728 6171 -3 5543 51 0 1 chr11 43953637 43954325 -104829147 + L1PA5 LINE L1 5468 6154 0 1974 168 0 23 chr11 43954520 43954865 -104828607 + MER1B DNA MER1_type 1 337 0 2117 125 39 30 chr11 43955085 43955446 -104828026 - THE1B LTR MaLR 0 364 1 1396 201 48 68 chr11 43955468 43955865 -104827607 - MLT1B LTR MaLR -1 389 1 478 243 27 0 chr11 43955870 43955981 -104827491 - MLT1B-int LTR MaLR -5 1366 1253 1202 82 0 13 chr11 43955981 43956140 -104827332 - AluSg/x SINE Alu -2 310 154 3320 236 94 34 chr11 43956159 43956445 -104827027 - MLT1B-int LTR MaLR -129 1606 1339 858 176 16 52 chr11 43956445 43956638 -104826834 - L1PA15 LINE L1 -9 6156 5971 3320 236 94 34 chr11 43956638 43957814 -104825658 - MLT1B-int LTR MaLR -396 1339 1 914 209 46 10 chr11 43957814 43958010 -104825462 - MLT1B LTR MaLR 0 390 188 222 118 0 0 chr11 43958025 43958059 -104825413 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 544 207 98 23 chr11 43958094 43958268 -104825204 - MLT1B LTR MaLR -203 187 1 459 227 35 57 chr11 43958347 43958488 -104824984 + MER5B DNA MER1_type 39 176 -2 186 271 51 17 chr11 43958726 43958785 -104824687 + MIR SINE MIR 19 79 -183 624 301 71 38 chr11 43959712 43959951 -104823521 + MIR SINE MIR 8 254 -8 749 356 67 27 chr11 43960206 43960925 -104822547 + L2 LINE L2 2565 3312 -1 443 304 164 0 chr11 43961864 43962065 -104821407 - MIR SINE MIR -18 244 11 2361 92 0 0 chr11 43962570 43962865 -104820607 + AluSx SINE Alu 3 297 -15 408 310 82 27 chr11 43963016 43963200 -104820272 + MIR SINE MIR 57 250 -12 405 39 0 0 chr11 43963707 43963758 -104819714 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr11 43965115 43965139 -104818333 + AT_rich Low_complexity Low_complexity 1 24 0 260 315 55 55 chr11 43965398 43965598 -104817874 - L2 LINE L2 -22 3291 3092 384 338 38 42 chr11 43965774 43965987 -104817485 - L2 LINE L2 -263 3050 2839 25 31 0 0 chr11 43967553 43967585 -104815887 + AT_rich Low_complexity Low_complexity 1 32 0 201 286 0 0 chr11 43967752 43967794 -104815678 - L2 LINE L2 -18 3254 3213 309 250 0 0 chr11 43968929 43969021 -104814451 + (TCCA)n Simple_repeat Simple_repeat 4 95 0 243 352 93 0 chr11 43969229 43969337 -104814135 + MIR3 SINE MIR 46 163 -45 1688 227 157 18 chr11 43970783 43971280 -104812192 - MLT1E LTR MaLR -1 592 27 9212 165 91 5 chr11 43971312 43973100 -104810372 - Tigger2 DNA MER2_type -1 2717 777 877 164 7 26 chr11 43973320 43973472 -104810000 - AluJo SINE Alu -150 162 14 292 230 11 11 chr11 43973485 43973572 -104809900 - L1M LINE L1 -767 5403 5317 401 135 14 0 chr11 43973653 43973727 -104809745 + L1MA7 LINE L1 6213 6287 -4 699 138 0 0 chr11 43973843 43973959 -104809513 - L1PA15 LINE L1 -4 6161 6046 269 265 15 0 chr11 43974652 43974720 -104808752 + L2 LINE L2 3202 3270 -2 199 424 93 0 chr11 43975532 43975650 -104807822 - L2 LINE L2 -25 3247 3119 1077 239 0 5 chr11 43975660 43975882 -104807590 - MER58A DNA MER1_type -3 221 1 238 293 75 9 chr11 43975955 43976061 -104807411 + L1ME LINE L1 5374 5486 -2322 377 356 72 14 chr11 43976161 43976369 -104807103 - MIR SINE MIR -10 252 33 235 326 0 0 chr11 43976504 43976593 -104806879 + L1ME LINE L1 5722 5810 -311 399 271 82 71 chr11 43977485 43977655 -104805817 - MER5B DNA MER1_type -6 172 1 854 225 39 0 chr11 43978796 43978978 -104804494 + MER5A DNA MER1_type 1 189 0 226 370 14 0 chr11 43978982 43979055 -104804417 + L2 LINE L2 3150 3223 -49 1774 134 75 31 chr11 43979445 43979804 -104803668 - THE1C LTR MaLR 0 375 1 2208 182 28 97 chr11 43980425 43981108 -104802364 - MER92B LTR ERV1 0 636 1 272 297 99 9 chr11 43981113 43981224 -104802248 - MIR SINE MIR -58 204 84 209 194 0 0 chr11 43983195 43983231 -104800241 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1856 163 20 0 chr11 43984026 43984326 -104799146 - AluSx SINE Alu -6 306 1 274 294 70 49 chr11 43984850 43984993 -104798479 + L2 LINE L2 2824 2969 -303 672 140 9 0 chr11 43985138 43985245 -104798227 - MER41B LTR ERV1 -527 108 1 27 0 0 0 chr11 43987560 43987587 -104795885 + AT_rich Low_complexity Low_complexity 1 27 0 978 235 93 14 chr11 43987612 43987957 -104795515 - MER113 DNA MER1_type? -98 423 52 225 216 39 0 chr11 43988311 43988362 -104795110 - L2 LINE L2 0 3313 3261 661 285 44 44 chr11 43988866 43989185 -104794287 - MLT1I LTR MaLR 0 409 91 21 0 0 0 chr11 43989532 43989553 -104793919 + AT_rich Low_complexity Low_complexity 1 21 0 411 205 36 0 chr11 43989812 43989895 -104793577 - MLT1H1 LTR MaLR -7 548 463 22 0 0 0 chr11 43990542 43990564 -104792908 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 43990602 43990629 -104792843 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 749 114 65 24 chr11 43990629 43990744 -104792728 - L1PA10 LINE L1 -21 6147 6025 316 276 40 19 chr11 43991077 43991188 -104792284 - MLT1H LTR MaLR -376 173 12 287 336 60 13 chr11 43992470 43992644 -104790828 + MIR SINE MIR 30 211 -51 846 289 83 18 chr11 43992796 43993220 -104790252 + L3 LINE CR1 832 1343 -234 2649 16 0 19 chr11 43993238 43993552 -104789920 + AluYa5 SINE Alu 1 308 -3 1965 105 69 0 chr11 43994526 43994844 -104788628 + AluSg SINE Alu 2 338 0 264 30 0 0 chr11 43995031 43995064 -104788408 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 43995850 43995871 -104787601 + AT_rich Low_complexity Low_complexity 1 21 0 378 320 66 11 chr11 43996173 43996354 -104787118 - MIR SINE MIR -26 236 46 222 260 96 67 chr11 43997242 43997346 -104786126 + L2 LINE L2 3207 3313 0 977 275 74 18 chr11 43997667 43998108 -104785364 + MLT1C LTR MaLR 1 467 0 871 281 76 17 chr11 44000476 44000764 -104782708 - L2 LINE L2 -34 3279 2975 1107 206 48 75 chr11 44000767 44001140 -104782332 + MLT1A1 LTR MaLR 1 363 -2 317 345 51 35 chr11 44001141 44001338 -104782134 - L2 LINE L2 -338 2976 2777 1689 132 21 43 chr11 44001693 44002020 -104781452 - L1MA2 LINE L1 0 6304 5985 551 305 10 15 chr11 44002028 44002228 -104781244 - MIR SINE MIR -60 202 4 374 347 71 19 chr11 44002669 44002937 -104780535 + HAL1 LINE L1 824 1105 -1402 246 147 0 0 chr11 44002937 44002971 -104780501 + Alu SINE Alu 1 34 -267 844 237 6 0 chr11 44003492 44003665 -104779807 + FAM SINE Alu 1 174 -1 205 345 151 29 chr11 44003893 44004032 -104779440 - L2 LINE L2 0 3272 3117 2129 123 5 75 chr11 44006375 44006764 -104776708 + THE1B LTR MaLR 1 362 -2 11472 97 2 10 chr11 44006766 44008358 -104775114 + THE1B-int LTR MaLR 1 1580 0 2342 107 11 35 chr11 44008358 44008731 -104774741 + THE1B LTR MaLR 1 364 0 267 341 60 17 chr11 44008954 44009108 -104774364 - MIR SINE MIR -75 133 11 319 323 114 80 chr11 44011271 44011720 -104771752 + L2 LINE L2 2809 3272 0 207 329 37 0 chr11 44012164 44012246 -104771226 + MIR3 SINE MIR 99 183 -25 2202 114 0 0 chr11 44012524 44012821 -104770651 + AluSg1 SINE Alu 1 297 -12 184 319 0 0 chr11 44012821 44012868 -104770604 - MER5A DNA MER1_type -56 133 87 1539 192 21 10 chr11 44012868 44013159 -104770313 + AluJo SINE Alu 1 294 -18 960 298 72 57 chr11 44014284 44014498 -104768974 + L2 LINE L2 2837 3046 -267 531 0 0 0 chr11 44014498 44014557 -104768915 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1707 125 4 12 chr11 44014560 44014808 -104768664 - AluSx SINE Alu -30 282 37 960 298 72 57 chr11 44014808 44015059 -104768413 + L2 LINE L2 3047 3313 0 229 389 75 48 chr11 44015332 44015774 -104767698 - L2 LINE L2 -4 3268 2815 837 322 69 13 chr11 44015822 44016198 -104767274 + MLT1I LTR MaLR 1 397 -12 205 396 9 0 chr11 44016244 44016350 -104767122 - L2 LINE L2 -609 2705 2599 378 283 57 121 chr11 44016384 44016536 -104766936 - L2 LINE L2 -705 2609 2449 28 0 0 0 chr11 44016536 44016564 -104766908 + AT_rich Low_complexity Low_complexity 1 28 0 378 283 57 121 chr11 44016564 44016857 -104766615 - L2 LINE L2 -865 2449 2167 22 0 0 0 chr11 44017030 44017052 -104766420 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 44017074 44017095 -104766377 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 44017682 44017706 -104765766 + AT_rich Low_complexity Low_complexity 1 24 0 204 353 19 104 chr11 44017853 44018122 -104765350 - L2 LINE L2 -188 3084 2839 467 258 39 77 chr11 44018502 44018666 -104764806 + MIR3 SINE MIR 49 207 -1 221 228 89 51 chr11 44020701 44020780 -104762692 - MIR SINE MIR -81 181 100 * 511 321 53 19 chr11 44020772 44020981 -104762491 + MIR SINE MIR 13 228 -34 783 235 16 5 chr11 44020981 44021168 -104762304 + MER5A DNA MER1_type 1 189 0 364 296 145 0 chr11 44021540 44021712 -104761760 + MIR SINE MIR 66 262 0 544 295 32 16 chr11 44021718 44021908 -104761564 - MIR SINE MIR -52 210 18 208 343 0 0 chr11 44022309 44022382 -104761090 + MIR3 SINE MIR 114 186 -22 198 132 57 0 chr11 44024008 44024061 -104759411 + CT-rich Low_complexity Low_complexity 1 56 0 1973 156 3 0 chr11 44024062 44024364 -104759108 - AluSx SINE Alu -7 305 3 185 91 0 30 chr11 44024493 44024526 -104758946 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1111 173 4 62 chr11 44024774 44025000 -104758472 + MER46A DNA MER2_type 2 214 -22 1291 185 31 16 chr11 44025002 44025256 -104758216 - AluJo SINE Alu -20 292 35 262 231 66 44 chr11 44025591 44025682 -104757790 + MIR SINE MIR 168 260 -2 303 306 49 35 chr11 44025839 44025983 -104757489 + MIR3 SINE MIR 16 161 -47 296 307 86 18 chr11 44026475 44026638 -104756834 - L2 LINE L2 -5 3308 3135 3070 237 47 16 chr11 44026912 44028354 -104755118 - L1MB8 LINE L1 0 6178 4678 182 333 171 8 chr11 44028405 44028528 -104754944 + L2 LINE L2 3121 3263 -9 263 323 55 30 chr11 44028624 44028788 -104754684 + MIR3 SINE MIR 11 178 -30 21 71 0 0 chr11 44028942 44028984 -104754488 + AT_rich Low_complexity Low_complexity 1 42 0 10404 181 39 20 chr11 44029873 44031416 -104752056 - L1PA13 LINE L1 -3 6160 4647 279 54 0 0 chr11 44031416 44031453 -104752019 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1886 133 7 11 chr11 44031453 44031739 -104751733 - AluSq SINE Alu -28 285 1 10404 181 39 20 chr11 44031739 44031890 -104751582 - L1PA13 LINE L1 -1516 4647 4500 261 0 0 0 chr11 44031890 44031919 -104751553 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10404 181 39 20 chr11 44031919 44033274 -104750198 - L1PA13 LINE L1 -1663 4500 3050 318 313 0 0 chr11 44034268 44034351 -104749121 - MER91 DNA MER1_type -61 129 47 246 347 69 42 chr11 44035107 44035323 -104748149 + L2 LINE L2 2665 2886 -428 1808 153 43 38 chr11 44036628 44037001 -104746471 + THE1C LTR MaLR 1 375 0 545 327 198 35 chr11 44037197 44037473 -104745999 - L2 LINE L2 -2 3311 2951 2041 80 4 0 chr11 44037473 44037737 -104745735 - AluY SINE Alu -2 309 45 545 327 198 35 chr11 44037737 44037855 -104745617 - L2 LINE L2 -362 2951 2853 1961 96 3 87 chr11 44037893 44038215 -104745257 - AluSc SINE Alu -14 295 1 301 290 31 68 chr11 44038392 44038554 -104744918 - L2 LINE L2 -2743 571 416 25 0 0 0 chr11 44039892 44039917 -104743555 + AT_rich Low_complexity Low_complexity 1 25 0 205 205 51 26 chr11 44040807 44040885 -104742587 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1779 179 19 22 chr11 44041046 44041415 -104742057 - THE1C LTR MaLR -3 372 5 345 290 88 31 chr11 44041827 44042020 -104741452 - L1ME4a LINE L1 -207 5914 5711 184 257 135 0 chr11 44043773 44043847 -104739625 + MIR SINE MIR 45 128 -80 249 289 44 11 chr11 44043941 44044031 -104739441 + LTR67 LTR ERVL 446 538 -19 422 320 102 15 chr11 44044139 44044345 -104739127 - MIR SINE MIR -2 260 37 654 223 0 0 chr11 44044400 44044521 -104738951 + FLAM_A SINE Alu 4 124 -9 21 0 0 0 chr11 44045532 44045553 -104737919 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr11 44046055 44046096 -104737376 + (T)n Simple_repeat Simple_repeat 1 41 0 452 296 101 0 chr11 44046424 44046583 -104736889 - MIR SINE MIR -27 235 61 2280 105 0 6 chr11 44047144 44047458 -104736014 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 44047458 44047479 -104735993 + AT_rich Low_complexity Low_complexity 1 21 0 625 294 36 14 chr11 44047585 44047806 -104735666 - MIR SINE MIR -30 232 7 21 0 0 0 chr11 44048337 44048358 -104735114 + AT_rich Low_complexity Low_complexity 1 21 0 653 234 108 52 chr11 44049316 44049547 -104733925 + MIR SINE MIR 4 247 -15 189 0 0 0 chr11 44049576 44049597 -104733875 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 44050229 44050252 -104733220 + AT_rich Low_complexity Low_complexity 1 23 0 222 204 0 0 chr11 44050266 44050310 -104733162 + (TG)n Simple_repeat Simple_repeat 2 45 0 2347 97 0 3 chr11 44051372 44051682 -104731790 + AluSp SINE Alu 1 309 -4 1422 134 36 9 chr11 44052128 44052351 -104731121 + MER30 DNA MER1_type 1 229 -1 2148 305 76 45 chr11 44052862 44053272 -104730200 - L2 LINE L2 -461 2853 2457 1807 172 125 10 chr11 44053272 44053656 -104729816 + MSTA LTR MaLR 1 428 0 9218 140 3 63 chr11 44053658 44055336 -104728136 + MSTA-int LTR MaLR 3 1580 0 1159 193 179 35 chr11 44055336 44055710 -104727762 + MSTA LTR MaLR 1 428 0 2148 305 76 45 chr11 44055710 44056546 -104726926 - L2 LINE L2 -856 2458 1564 741 0 0 0 chr11 44056888 44056975 -104726497 + L1HS LINE L1 6069 6155 0 213 94 0 0 chr11 44056982 44057014 -104726458 + (A)n Simple_repeat Simple_repeat 1 32 0 1842 182 54 44 chr11 44058489 44058917 -104724555 + MSTB1 LTR MaLR 1 432 0 1165 174 147 26 chr11 44059324 44059649 -104723823 - MSTA LTR MaLR 0 428 43 4559 142 89 3 chr11 44059654 44060576 -104722896 - Tigger1 DNA MER2_type -180 2238 1149 26203 146 16 64 chr11 44060597 44063598 -104719874 - L1PA8 LINE L1 -1 6171 3655 2084 126 6 25 chr11 44063598 44063915 -104719557 - AluSx SINE Alu -1 311 1 26203 146 16 64 chr11 44063915 44067386 -104716086 - L1PA8 LINE L1 -2517 3655 20 306 203 0 14 chr11 44067386 44067455 -104716017 - MSTA LTR MaLR -359 69 2 679 318 104 53 chr11 44068018 44068791 -104714681 + L2 LINE L2 2457 3295 -18 860 251 58 81 chr11 44068959 44069070 -104714402 - MLT1C LTR MaLR 0 390 278 192 40 0 0 chr11 44069070 44069095 -104714377 + (TC)n Simple_repeat Simple_repeat 1 25 0 860 251 58 81 chr11 44069095 44069377 -104714095 - MLT1C LTR MaLR -112 278 6 216 300 14 29 chr11 44069400 44069470 -104714002 + L2 LINE L2 3156 3224 -48 225 143 0 0 chr11 44069678 44069713 -104713759 - L1PA13 LINE L1 -207 5956 5922 1298 146 0 0 chr11 44069715 44069921 -104713551 + L1PA13 LINE L1 5942 6147 -16 216 308 31 54 chr11 44069937 44070067 -104713405 - L2 LINE L2 -9 3304 3178 207 357 57 57 chr11 44071054 44071298 -104712174 - L2 LINE L2 -702 2612 2369 1214 236 57 38 chr11 44071327 44071696 -104711776 + MLT1B LTR MaLR 15 390 0 265 331 200 0 chr11 44071909 44071991 -104711481 - MER5A DNA MER1_type -7 182 118 2072 125 0 0 chr11 44071991 44072271 -104711201 - AluSx SINE Alu -20 292 13 265 331 200 0 chr11 44072271 44072333 -104711139 - MER5A DNA MER1_type -71 118 9 5264 140 12 20 chr11 44072813 44073423 -104710049 - L1PA15 LINE L1 -13 6152 5546 7349 195 52 73 chr11 44073423 44075216 -104708256 - MER52A LTR ERV1 0 1755 1 5264 140 12 20 chr11 44075216 44075758 -104707714 - L1PA15 LINE L1 -619 5546 5001 189 204 23 23 chr11 44076211 44076255 -104707217 - MIR SINE MIR -142 120 77 278 306 92 53 chr11 44076434 44076640 -104706832 + L1ME3A LINE L1 5392 5608 -562 1131 257 83 32 chr11 44076648 44077091 -104706381 + L1ME3A LINE L1 5695 6160 -10 361 343 28 0 chr11 44077216 44077324 -104706148 + L2 LINE L2 3133 3243 -29 1647 279 101 13 chr11 44078393 44078938 -104704534 - MLT1E LTR MaLR 0 593 1 27 0 0 0 chr11 44080411 44080438 -104703034 + AT_rich Low_complexity Low_complexity 1 27 0 297 75 0 0 chr11 44080465 44080505 -104702967 + (T)n Simple_repeat Simple_repeat 1 40 0 202 302 60 78 chr11 44080960 44081076 -104702396 - MER5A DNA MER1_type -75 114 1 3705 76 66 0 chr11 44081170 44081686 -104701786 + L1PA8 LINE L1 5566 6115 -57 348 329 7 18 chr11 44081762 44081905 -104701567 - MIR SINE MIR -55 153 14 299 258 155 10 chr11 44082082 44082179 -104701293 - L2 LINE L2 -1 3312 3202 442 337 49 76 chr11 44082332 44082589 -104700883 + L2 LINE L2 2504 2743 -571 2067 134 45 31 chr11 44082589 44082948 -104700524 - THE1B LTR MaLR 0 364 1 442 337 49 76 chr11 44082948 44083176 -104700296 + L2 LINE L2 2743 2976 -338 282 346 0 0 chr11 44083178 44083279 -104700193 + L2 LINE L2 3213 3313 0 2325 103 0 0 chr11 44083463 44083765 -104699707 + AluSg SINE Alu 1 302 -8 32 0 0 0 chr11 44084421 44084453 -104699019 + AT_rich Low_complexity Low_complexity 1 32 0 508 228 24 0 chr11 44084457 44084584 -104698888 - L1MB7 LINE L1 -20 6164 6035 * 1210 190 76 20 chr11 44084582 44085092 -104698380 - L1MB7 LINE L1 -586 5588 5060 344 262 103 24 chr11 44085682 44085808 -104697664 + MIR SINE MIR 70 205 -57 202 309 61 61 chr11 44086722 44086837 -104696635 + MIR3 SINE MIR 68 182 -26 237 290 80 57 chr11 44088047 44088223 -104695249 + MIR SINE MIR 80 259 -3 319 304 150 32 chr11 44088287 44088507 -104694965 + MIR SINE MIR 17 262 0 216 0 0 0 chr11 44088933 44088957 -104694515 + (A)n Simple_repeat Simple_repeat 1 24 0 190 217 0 43 chr11 44090307 44090399 -104693073 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 2368 60 17 7 chr11 44091868 44092166 -104691306 - AluY SINE Alu -10 301 1 492 308 47 24 chr11 44092251 44092462 -104691010 - Charlie8 DNA MER1_type -2160 257 42 1134 189 27 8 chr11 44092867 44093127 -104690345 + L1P LINE L1 4924 5188 -958 271 220 240 20 chr11 44093129 44093229 -104690243 - MER34 LTR ERV1 -420 122 1 277 325 150 19 chr11 44094232 44094392 -104689080 + MIR SINE MIR 16 196 -66 276 30 0 0 chr11 44094418 44094451 -104689021 + (TG)n Simple_repeat Simple_repeat 1 33 0 868 217 11 6 chr11 44094523 44094698 -104688774 + AluJb SINE Alu 137 312 0 1087 235 35 45 chr11 44094983 44095387 -104688085 + LTR37A LTR ERV1 27 426 0 25 0 0 0 chr11 44096201 44096226 -104687246 + AT_rich Low_complexity Low_complexity 1 25 0 190 280 80 30 chr11 44096266 44096366 -104687106 + MIR3 SINE MIR 103 207 -1 2177 105 0 16 chr11 44096447 44096761 -104686711 + L1PA10 LINE L1 5807 6115 -53 540 110 0 0 chr11 44096784 44096907 -104686565 - AluY SINE Alu 0 333 211 451 48 16 0 chr11 44096960 44097085 -104686387 + L1PA10 LINE L1 6102 6227 0 314 80 13 40 chr11 44097343 44097418 -104686054 + (TA)n Simple_repeat Simple_repeat 2 74 0 430 129 24 0 chr11 44097482 44097567 -104685905 + (TA)n Simple_repeat Simple_repeat 1 87 0 216 0 0 0 chr11 44097568 44097592 -104685880 + (TG)n Simple_repeat Simple_repeat 2 25 0 944 209 188 41 chr11 44097608 44097953 -104685519 - MSTD LTR MaLR 0 396 1 416 218 115 0 chr11 44098436 44098523 -104684949 + MER81 DNA DNA 17 113 -1 213 347 41 10 chr11 44100448 44100546 -104682926 + MIR SINE MIR 40 140 -68 225 362 126 0 chr11 44100636 44100763 -104682709 - L2 LINE L2 -5 3267 3125 239 172 0 17 chr11 44101166 44101224 -104682248 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 324 0 0 0 chr11 44103419 44103455 -104680017 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 62 0 0 chr11 44103816 44103864 -104679608 + AT_rich Low_complexity Low_complexity 1 48 0 12841 138 85 17 chr11 44105038 44107290 -104676182 - Tigger1 DNA MER2_type -13 2405 1 315 301 165 51 chr11 44107420 44107596 -104675876 + MIR SINE MIR 41 236 -26 21 57 0 0 chr11 44108785 44108820 -104674652 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr11 44108930 44108960 -104674512 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chr11 44109852 44109883 -104673589 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 0 0 0 chr11 44110808 44110867 -104672605 + (TC)n Simple_repeat Simple_repeat 1 59 0 474 358 95 29 chr11 44110881 44111280 -104672192 - L2 LINE L2 -77 3236 2792 1207 211 105 81 chr11 44111280 44111736 -104671736 - MLT1C LTR MaLR 0 467 1 474 358 95 29 chr11 44111736 44111834 -104671638 - L2 LINE L2 -521 2792 2702 509 252 87 90 chr11 44111835 44111934 -104671538 + L1ME1 LINE L1 5902 6000 -166 6308 84 9 5 chr11 44111934 44112980 -104670492 + L1PA8A LINE L1 5078 6131 0 509 252 87 90 chr11 44112980 44113146 -104670326 + L1ME1 LINE L1 6000 6166 0 21 36 0 0 chr11 44113866 44113894 -104669578 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 62 chr11 44114210 44114258 -104669214 + AT_rich Low_complexity Low_complexity 1 45 0 390 298 170 5 chr11 44114328 44114516 -104668956 + L2 LINE L2 3094 3312 -1 1089 62 62 56 chr11 44116000 44116178 -104667294 - AluY SINE Alu -6 305 127 1838 139 55 0 chr11 44116410 44116684 -104666788 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr11 44116696 44116722 -104666750 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr11 44116805 44116829 -104666643 + AT_rich Low_complexity Low_complexity 1 24 0 359 252 43 52 chr11 44117177 44117292 -104666180 - MER81 DNA DNA 0 114 1 249 256 12 37 chr11 44117651 44117733 -104665739 + MIR SINE MIR 31 110 -152 1603 211 44 26 chr11 44117754 44117943 -104665529 + MLT1A1 LTR MaLR 19 218 -147 2158 135 154 0 chr11 44117943 44118314 -104665158 + MSTA LTR MaLR 1 428 0 1603 211 44 26 chr11 44118314 44118465 -104665007 + MLT1A1 LTR MaLR 218 365 0 5196 181 21 8 chr11 44118979 44120078 -104663394 + L1MA4 LINE L1 5189 6298 -2 623 118 0 0 chr11 44120078 44120163 -104663309 + AluSg/x SINE Alu 203 287 -25 273 57 0 0 chr11 44120166 44120201 -104663271 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 238 305 37 24 chr11 44120269 44120351 -104663121 - MIR SINE MIR -170 92 10 195 100 0 0 chr11 44120795 44120825 -104662647 + (ATG)n Simple_repeat Simple_repeat 3 32 0 205 272 141 54 chr11 44120981 44121073 -104662399 - MIR SINE MIR -90 118 19 1594 214 48 30 chr11 44121776 44122235 -104661237 - MLT1C LTR MaLR 0 467 1 214 363 88 0 chr11 44122466 44122579 -104660893 - MIR SINE MIR -120 142 20 27 87 0 0 chr11 44122749 44122818 -104660654 + AT_rich Low_complexity Low_complexity 1 69 0 679 309 91 58 chr11 44123641 44124266 -104659206 - L2 LINE L2 -456 2858 2213 835 228 110 45 chr11 44124446 44124825 -104658647 - L1MC/D LINE L1 -860 5437 5273 181 343 34 41 chr11 44125010 44125156 -104658316 + MIR SINE MIR 62 206 -56 274 313 0 12 chr11 44125280 44125363 -104658109 + CT-rich Low_complexity Low_complexity 5 86 0 327 146 0 0 chr11 44126022 44126077 -104657395 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1834 164 93 49 chr11 44126163 44126395 -104657077 - MSTB LTR MaLR 0 426 167 2331 111 0 0 chr11 44126395 44126702 -104656770 - AluSx SINE Alu -5 307 1 1834 164 93 49 chr11 44126702 44126877 -104656595 - MSTB LTR MaLR -259 167 1 216 204 0 0 chr11 44127010 44127054 -104656418 + (TAA)n Simple_repeat Simple_repeat 1 44 0 349 0 0 0 chr11 44127239 44127278 -104656194 - MER4D LTR ERV1 -74 798 760 234 176 20 0 chr11 44129176 44129227 -104654245 - L1ME LINE L1 -223 5898 5847 223 372 13 0 chr11 44130890 44130968 -104652504 - L2 LINE L2 -1 3271 3193 323 287 0 0 chr11 44131009 44131096 -104652376 + MIR SINE MIR 170 256 -6 452 284 72 72 chr11 44131270 44131534 -104651938 - MER102b DNA MER1_type -9 332 69 222 335 65 53 chr11 44131747 44131917 -104651555 + MER5B DNA MER1_type 4 175 -3 224 370 62 35 chr11 44132007 44132234 -104651238 + L2 LINE L2 2859 3091 -181 373 188 134 40 chr11 44133608 44133757 -104649715 + L1MC4 LINE L1 7661 7823 -219 294 76 39 0 chr11 44133749 44133800 -104649672 - L1PA8 LINE L1 -8 6164 6095 * 26 50 0 0 chr11 44133800 44133840 -104649632 + AT_rich Low_complexity Low_complexity 1 40 0 388 343 94 52 chr11 44134383 44135018 -104648454 + L2 LINE L2 1698 2359 -955 2176 185 39 14 chr11 44135035 44135451 -104648021 + MSTB LTR MaLR 1 426 0 433 346 176 29 chr11 44136160 44136649 -104646823 - L2 LINE L2 -466 2848 2288 247 333 51 13 chr11 44136683 44136761 -104646711 - MER91A DNA MER1_type 0 196 116 24 0 0 0 chr11 44138939 44138963 -104644509 + AT_rich Low_complexity Low_complexity 1 24 0 392 366 31 31 chr11 44139012 44139269 -104644203 + L3 LINE CR1 278 534 -1043 359 330 200 0 chr11 44139288 44139473 -104643999 + L3 LINE CR1 1243 1464 -113 1294 198 119 44 chr11 44139510 44140030 -104643442 - Charlie1a DNA MER1_type -1 1454 896 384 241 12 0 chr11 44140030 44140113 -104643359 + MER1A DNA MER1_type 1 84 -443 * 3256 123 6 38 chr11 44140086 44140613 -104642859 + MER1A DNA MER1_type 17 529 0 2913 235 47 35 chr11 44140613 44141505 -104641967 - Charlie1a DNA MER1_type -552 903 1 571 257 53 23 chr11 44141509 44141680 -104641792 + MIR SINE MIR 13 188 -74 405 39 0 0 chr11 44141741 44141792 -104641680 + (TA)n Simple_repeat Simple_repeat 1 51 0 1314 177 119 29 chr11 44141912 44142222 -104641250 + MER2 DNA MER2_type 8 345 0 607 316 47 5 chr11 44142530 44142742 -104640730 + MIR SINE MIR 28 248 -14 2388 77 0 13 chr11 44143004 44143317 -104640155 + AluY SINE Alu 1 309 -2 539 22 0 45 chr11 44144297 44144386 -104639086 + (TA)n Simple_repeat Simple_repeat 1 85 0 269 321 168 8 chr11 44144579 44144710 -104638762 + MIR SINE MIR 25 176 -86 306 310 35 44 chr11 44144796 44144999 -104638473 + MIR SINE MIR 15 215 -47 1427 197 60 18 chr11 44145421 44145705 -104637767 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 44145875 44146004 -104637468 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 44146028 44146059 -104637413 + AT_rich Low_complexity Low_complexity 1 31 0 308 255 66 9 chr11 44146124 44146230 -104637242 - L1MC4 LINE L1 -242 7800 7689 1113 52 0 0 chr11 44146669 44146805 -104636667 + AluSg/x SINE Alu 175 310 0 207 188 58 58 chr11 44147202 44147271 -104636201 + MIR SINE MIR 147 215 -47 1427 197 60 18 chr11 44147693 44147977 -104635495 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 44148147 44148276 -104635196 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 44148300 44148331 -104635141 + AT_rich Low_complexity Low_complexity 1 31 0 2917 3 0 0 chr11 44148498 44148811 -104634661 + AluYb8 SINE Alu 1 313 -5 1088 53 0 0 chr11 44149263 44149395 -104634077 + AluSg/x SINE Alu 177 308 -4 1046 77 35 0 chr11 44149838 44150007 -104633465 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 569 157 21 14 chr11 44150008 44150148 -104633324 + CT-rich Low_complexity Low_complexity 2 142 0 638 238 74 11 chr11 44150268 44150457 -104633015 - MER3 DNA MER1_type -1 208 8 2230 113 45 5 chr11 44150457 44150959 -104632513 - L1PA12 LINE L1 -688 5480 4956 4475 110 8 9 chr11 44150959 44151629 -104631843 + L1PA12 LINE L1 5499 6168 0 320 227 147 0 chr11 44151674 44151749 -104631723 + MER5A DNA MER1_type 10 95 -94 2407 61 0 3 chr11 44152860 44153155 -104630317 - AluSc SINE Alu -15 294 1 704 225 13 20 chr11 44153190 44153341 -104630131 + MIR SINE MIR 51 200 -62 2083 121 0 32 chr11 44155362 44155677 -104627795 + AluSx SINE Alu 6 310 -2 989 231 9 14 chr11 44155702 44155918 -104627554 - MER20 DNA MER1_type -1 218 4 209 404 53 18 chr11 44156008 44156293 -104627179 - L2 LINE L2 -557 2757 2463 264 330 54 77 chr11 44156424 44156645 -104626827 - L2 LINE L2 -859 2455 2240 3066 150 21 4 chr11 44157004 44157490 -104625982 + MER1A DNA MER1_type 31 524 -5 325 248 73 46 chr11 44158533 44158642 -104624830 + MIR SINE MIR 105 216 -46 263 71 100 0 chr11 44158888 44158940 -104624532 - MLT2B3 LTR ERVL 0 554 398 2249 245 14 21 chr11 44159180 44159699 -104623773 - MLT2B3 LTR ERVL -39 515 1 22 0 0 0 chr11 44160634 44160656 -104622816 + AT_rich Low_complexity Low_complexity 1 22 0 200 217 0 0 chr11 44160904 44160950 -104622522 + T-rich Low_complexity Low_complexity 1 46 0 1838 137 128 16 chr11 44161056 44161422 -104622050 - MSTA LTR MaLR 0 428 22 1669 171 82 6 chr11 44161523 44161851 -104621621 + THE1C LTR MaLR 23 375 0 9017 189 16 11 chr11 44161863 44161927 -104621545 - MSTA-int LTR MaLR 0 1651 1589 1948 154 0 0 chr11 44161927 44162213 -104621259 + AluSx SINE Alu 13 298 -14 9017 189 16 11 chr11 44162213 44163790 -104619682 - MSTA-int LTR MaLR -62 1589 1 2108 129 135 5 chr11 44163790 44164169 -104619303 - MSTA LTR MaLR 0 428 1 441 248 113 78 chr11 44164189 44164419 -104619053 - MLT1H LTR MaLR -170 379 142 12195 167 29 43 chr11 44164504 44166947 -104616525 - Tigger1 DNA MER2_type -11 2407 1 397 138 25 0 chr11 44167114 44167194 -104616278 + CT-rich Low_complexity Low_complexity 3 84 0 211 224 61 0 chr11 44167295 44167344 -104616128 + L2 LINE L2 3023 3074 -198 7791 36 4 0 chr11 44168251 44169974 -104613498 + L1PA4 LINE L1 4426 6152 -3 506 298 0 13 chr11 44170115 44170273 -104613199 - MIR SINE MIR 0 262 107 217 284 75 0 chr11 44170839 44170906 -104612566 + MIR SINE MIR 53 124 -138 946 220 98 31 chr11 44171914 44172314 -104611158 - MLT1D LTR MaLR 0 505 1 388 278 10 0 chr11 44172367 44172464 -104611008 - MER58A DNA MER1_type -8 99 2 369 145 0 0 chr11 44174188 44174250 -104609222 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 390 248 8 66 chr11 44174927 44175048 -104608424 + MER81 DNA DNA 1 114 0 393 290 155 19 chr11 44175159 44175314 -104608158 + MER5B DNA MER1_type 3 178 0 538 257 27 59 chr11 44175949 44176099 -104607373 - MIR SINE MIR -28 234 90 1891 165 16 27 chr11 44176099 44176468 -104607004 - MLT1A1 LTR MaLR 0 365 1 538 257 27 59 chr11 44176468 44176504 -104606968 - MIR SINE MIR -172 90 54 201 293 0 0 chr11 44176862 44176920 -104606552 + GA-rich Low_complexity Low_complexity 1 58 0 236 186 0 100 chr11 44177757 44177827 -104605645 - MIR SINE MIR -75 187 125 321 26 0 0 chr11 44181414 44181452 -104602020 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 324 0 0 0 chr11 44181451 44181487 -104601985 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 328 40 48 chr11 44182071 44182196 -104601276 + MIR SINE MIR 21 144 -64 468 303 83 18 chr11 44182261 44182479 -104600993 - MIR SINE MIR 0 262 31 298 231 43 103 chr11 44183362 44183596 -104599876 + L1ME4a LINE L1 5798 6017 -104 5055 33 0 0 chr11 44184338 44184947 -104598525 - L1P LINE L1 -3877 2269 1661 7872 14 0 0 chr11 44184947 44185970 -104597502 + L1PA3 LINE L1 5133 6155 0 1198 242 98 105 chr11 44186295 44186997 -104596475 + L1MEc LINE L1 36 732 -5664 1021 272 6 6 chr11 44187297 44187632 -104595840 - L1 LINE L1 -3236 2910 2576 4741 142 5 17 chr11 44187633 44188401 -104595071 + L1PA16 LINE L1 5399 6157 -9 2379 47 33 10 chr11 44189019 44189319 -104594153 + AluY SINE Alu 3 309 -2 205 290 140 21 chr11 44190329 44190422 -104593050 - MIR SINE MIR -118 144 41 389 336 96 5 chr11 44190937 44191145 -104592327 + MIR SINE MIR 8 234 -28 187 317 108 25 chr11 44191144 44191264 -104592208 - MIR SINE MIR -15 247 118 * 1230 302 58 11 chr11 44191985 44192419 -104591053 + LTR16B LTR ERVL 11 464 0 245 353 29 59 chr11 44192448 44192618 -104590854 + L2 LINE L2 3146 3310 -3 183 349 107 20 chr11 44193918 44194067 -104589405 + MIR SINE MIR 79 240 -22 * 565 220 30 60 chr11 44194025 44194193 -104589279 - MIR SINE MIR 0 262 100 184 267 22 0 chr11 44194230 44194275 -104589197 + L2 LINE L2 3209 3254 -18 245 394 68 0 chr11 44194399 44194531 -104588941 - L2 LINE L2 -39 3233 3093 183 80 0 0 chr11 44194815 44194840 -104588632 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr11 44195328 44195359 -104588113 + AT_rich Low_complexity Low_complexity 1 31 0 1585 156 47 0 chr11 44196381 44196497 -104586975 + AluJo SINE Alu 1 110 -202 180 0 0 0 chr11 44196497 44196517 -104586955 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1585 156 47 0 chr11 44196517 44196675 -104586797 + AluJo SINE Alu 110 288 -24 426 39 0 0 chr11 44196693 44196745 -104586727 + (CA)n Simple_repeat Simple_repeat 2 53 0 2735 131 19 19 chr11 44196848 44197322 -104586150 - L1PA16 LINE L1 0 6166 5693 545 317 48 10 chr11 44197494 44197702 -104585770 + MIR SINE MIR 44 259 -3 2472 60 3 0 chr11 44197702 44198001 -104585471 + AluY SINE Alu 1 300 -11 486 0 0 0 chr11 44198271 44198325 -104585147 + (TA)n Simple_repeat Simple_repeat 1 54 0 28 61 0 0 chr11 44199246 44199295 -104584177 + AT_rich Low_complexity Low_complexity 1 49 0 6833 31 5 1 chr11 44199308 44200780 -104582692 - L1PA4 LINE L1 -121 6034 4558 223 348 71 22 chr11 44201849 44202033 -104581439 + MIR SINE MIR 41 233 -29 216 328 153 21 chr11 44202556 44202745 -104580727 + MIR SINE MIR 13 226 -36 192 235 162 15 chr11 44204176 44204244 -104579228 - L2 LINE L2 -4 3268 3191 2193 101 7 3 chr11 44205001 44205298 -104578174 - AluSq SINE Alu -15 298 1 299 350 44 12 chr11 44205450 44205610 -104577862 + MIR SINE MIR 72 236 -26 3229 172 41 27 chr11 44205710 44205771 -104577701 + Tigger3b DNA MER2_type 12 71 -2957 4204 84 39 3 chr11 44205771 44206355 -104577117 - LTR14B LTR ERVK 0 608 4 3229 172 41 27 chr11 44206355 44206970 -104576502 + Tigger3b DNA MER2_type 71 701 -2327 704 139 0 0 chr11 44206970 44207092 -104576380 + L1MA4 LINE L1 6165 6286 -14 3229 172 41 27 chr11 44207092 44207123 -104576349 + Tigger3b DNA MER2_type 701 730 -501 425 179 0 0 chr11 44207134 44207201 -104576271 + AluS SINE Alu 1 67 -246 1516 265 103 19 chr11 44257418 44258020 -104525452 + MER20B DNA MER1_type 6 671 -112 219 88 0 0 chr11 44258020 44258054 -104525418 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1516 265 103 19 chr11 44258054 44258122 -104525350 + MER20B DNA MER1_type 671 732 -51 808 128 7 54 chr11 44258283 44258432 -104525040 - FRAM SINE Alu -13 163 22 24 85 0 0 chr11 44258469 44258528 -104524944 + AT_rich Low_complexity Low_complexity 1 59 0 331 350 26 0 chr11 44259241 44259391 -104524081 + L2 LINE L2 2853 3006 -307 338 398 27 16 chr11 44259391 44259577 -104523895 + MER91A DNA MER1_type 1 188 -8 329 234 175 19 chr11 44259611 44259765 -104523707 + L2 LINE L2 3030 3207 -106 848 140 15 7 chr11 44259865 44260001 -104523471 - AluSq/x SINE Alu -176 137 1 303 161 0 0 chr11 44260310 44260366 -104523106 + (TG)n Simple_repeat Simple_repeat 2 57 0 2064 122 7 0 chr11 44261546 44261833 -104521639 - AluSg SINE Alu -21 289 1 234 329 14 0 chr11 44262186 44262259 -104521213 + MIR SINE MIR 189 262 0 218 278 19 0 chr11 44263267 44263321 -104520151 - MIR SINE MIR -64 144 90 293 258 0 54 chr11 44263579 44263672 -104519800 - MER5A DNA MER1_type -98 91 4 247 115 77 19 chr11 44263865 44263917 -104519555 - MLT2A2 LTR ERVL 0 453 399 180 0 0 0 chr11 44263934 44263954 -104519518 + (CA)n Simple_repeat Simple_repeat 2 21 0 2904 77 39 0 chr11 44263954 44264342 -104519130 - MLT2A2 LTR ERVL -50 403 1 180 0 0 0 chr11 44266102 44266122 -104517350 + (CA)n Simple_repeat Simple_repeat 2 21 0 427 298 227 5 chr11 44267508 44267706 -104515766 - MIR SINE MIR 0 262 21 252 59 0 0 chr11 44267905 44267939 -104515533 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2708 87 3 21 chr11 44268395 44268775 -104514697 - THE1C LTR MaLR 0 375 3 291 333 65 25 chr11 44269264 44269465 -104514007 + L2 LINE L2 2306 2514 -800 464 334 91 54 chr11 44269504 44269631 -104513841 + L2 LINE L2 2736 2857 -456 3055 80 11 20 chr11 44269631 44270083 -104513389 - LTR7 LTR ERV1 -2 448 1 464 334 91 54 chr11 44270083 44270472 -104513000 + L2 LINE L2 2857 3295 -18 229 313 91 80 chr11 44270672 44270947 -104512525 + MLT1H1 LTR MaLR 1 278 -252 388 281 150 0 chr11 44270953 44271108 -104512364 + MLT1H1 LTR MaLR 383 555 0 283 354 41 37 chr11 44273305 44273548 -104509924 - MLT1L LTR MaLR 0 615 372 750 137 0 0 chr11 44273691 44273808 -104509664 - THE1B LTR MaLR 0 364 248 593 106 160 0 chr11 44273807 44273901 -104509571 - THE1B LTR MaLR -266 109 1 * 202 381 7 20 chr11 44274119 44274266 -104509206 + L2 LINE L2 2626 2770 -544 188 340 66 9 chr11 44274394 44274500 -104508972 + L2 LINE L2 2765 2876 -438 1386 271 98 22 chr11 44275039 44275577 -104507895 - MLT1L LTR MaLR 0 615 37 643 268 138 42 chr11 44276543 44276782 -104506690 - MIR SINE MIR 0 262 1 507 274 119 46 chr11 44276880 44277099 -104506373 - MIR SINE MIR -10 252 18 450 313 46 35 chr11 44277877 44278136 -104505336 + MIR SINE MIR 1 262 0 272 290 154 19 chr11 44278938 44279100 -104504372 - MIR SINE MIR -73 189 6 216 307 44 18 chr11 44279105 44279219 -104504253 - L3 LINE CR1 -761 816 700 229 128 0 0 chr11 44279747 44279786 -104503686 + L1MC4 LINE L1 6663 6701 -1341 183 129 0 0 chr11 44279789 44279820 -104503652 + (TA)n Simple_repeat Simple_repeat 2 32 0 280 315 79 16 chr11 44281280 44281407 -104502065 + MIR SINE MIR 20 154 -108 223 263 150 0 chr11 44281986 44282066 -104501406 - L3 LINE CR1 -1 1576 1485 374 314 36 36 chr11 44282193 44282333 -104501139 - MIR3 SINE MIR -48 160 21 183 156 0 0 chr11 44282897 44282929 -104500543 + T-rich Low_complexity Low_complexity 1 32 0 352 291 159 21 chr11 44283574 44283763 -104499709 - MIR SINE MIR -17 245 31 232 313 36 12 chr11 44283899 44283982 -104499490 - MIR SINE MIR -133 129 45 280 261 49 70 chr11 44284302 44284444 -104499028 - MIR SINE MIR 0 262 124 222 174 0 0 chr11 44284687 44284733 -104498739 + A-rich Low_complexity Low_complexity 1 46 0 4491 170 32 13 chr11 44285283 44286131 -104497341 - MER6 DNA MER2_type -1 864 1 2554 59 0 0 chr11 44286306 44286611 -104496861 + AluY SINE Alu 1 305 -6 248 274 0 26 chr11 44286901 44287014 -104496458 - L1MC5 LINE L1 -748 7213 7104 2320 62 0 86 chr11 44287014 44287351 -104496121 + AluY SINE Alu 1 308 -3 416 274 142 9 chr11 44288111 44288349 -104495123 + MIR SINE MIR 2 246 -16 315 329 70 24 chr11 44288869 44289082 -104494390 + MIR SINE MIR 10 232 -30 294 348 43 0 chr11 44289566 44289704 -104493768 + MIR SINE MIR 48 191 -71 1799 199 0 0 chr11 44290150 44290457 -104493015 + AluJb SINE Alu 1 307 -5 429 279 23 23 chr11 44290466 44290595 -104492877 + MIR SINE MIR 37 165 -97 420 20 0 0 chr11 44290997 44291046 -104492426 + (TG)n Simple_repeat Simple_repeat 1 49 0 201 315 34 0 chr11 44291617 44291706 -104491766 - L3b LINE CR1 -385 1198 1107 260 333 71 7 chr11 44291822 44291963 -104491509 + L2 LINE L2 3160 3309 -4 372 71 0 0 chr11 44293189 44293245 -104490227 + (TG)n Simple_repeat Simple_repeat 2 57 0 228 35 0 0 chr11 44293253 44293282 -104490190 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 250 0 0 chr11 44294072 44294108 -104489364 - L2 LINE L2 -2925 389 354 285 364 40 30 chr11 44294770 44294968 -104488504 + MIR SINE MIR 49 248 -14 218 271 17 17 chr11 44295233 44295292 -104488180 + L2 LINE L2 3205 3263 -9 212 344 52 39 chr11 44296186 44296340 -104487132 + L2 LINE L2 3139 3294 -19 696 250 57 10 chr11 44296387 44296579 -104486893 + MER3 DNA MER1_type 9 209 0 241 298 58 29 chr11 44297437 44297541 -104485931 - MIR SINE MIR -19 243 137 208 264 0 0 chr11 44298988 44299041 -104484431 + (TTA)n Simple_repeat Simple_repeat 1 53 0 225 290 16 0 chr11 44299041 44299103 -104484369 + MIR SINE MIR 95 157 -105 21 0 0 0 chr11 44299868 44299889 -104483583 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr11 44300028 44300074 -104483398 + AT_rich Low_complexity Low_complexity 1 46 0 2688 157 18 7 chr11 44300093 44300540 -104482932 - Tigger2 DNA MER2_type -2 2716 2265 399 147 29 0 chr11 44300521 44300589 -104482883 - Tigger2 DNA MER2_type -2648 70 1 * 462 321 122 15 chr11 44300603 44300799 -104482673 + MIR SINE MIR 1 217 -45 1147 179 0 0 chr11 44300811 44301029 -104482443 - L1P LINE L1 -909 5237 5020 818 116 0 0 chr11 44301029 44301146 -104482326 + L1PA13 LINE L1 6038 6158 -5 1263 113 80 5 chr11 44301601 44301813 -104481659 + MER30 DNA MER1_type 3 230 0 238 262 71 12 chr11 44303059 44303143 -104480329 - MIR SINE MIR 0 262 174 355 306 70 13 chr11 44303544 44303701 -104479771 - MIR SINE MIR -79 183 18 970 271 53 12 chr11 44304829 44305169 -104478303 - MLT1C LTR MaLR -61 406 53 203 158 79 0 chr11 44306234 44306272 -104477200 + L2 LINE L2 3265 3305 -8 365 215 45 79 chr11 44306303 44306480 -104476992 - L1MA9 LINE L1 -185 6106 5936 22 0 0 0 chr11 44306752 44306774 -104476698 + AT_rich Low_complexity Low_complexity 1 22 0 554 339 60 51 chr11 44306826 44307361 -104476111 - L2 LINE L2 0 3313 2779 209 108 0 27 chr11 44307487 44307524 -104475948 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 44307656 44307684 -104475788 + AT_rich Low_complexity Low_complexity 1 28 0 225 326 23 0 chr11 44308441 44308527 -104474945 + MIR SINE MIR 103 190 -72 979 168 74 5 chr11 44311229 44311431 -104472041 + L1MD3 LINE L1 7766 7981 -14 197 105 0 26 chr11 44311631 44311669 -104471803 + (CATA)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr11 44311714 44311753 -104471719 + AT_rich Low_complexity Low_complexity 1 39 0 487 276 69 69 chr11 44312101 44312623 -104470849 - L1M4 LINE L1 -3126 3020 2499 2225 80 7 3 chr11 44313047 44313336 -104470136 + AluY SINE Alu 1 290 -21 1390 41 17 0 chr11 44313435 44313607 -104469865 + LTR17 LTR ERV1 152 326 -454 297 109 0 0 chr11 44313607 44313653 -104469819 + (A)n Simple_repeat Simple_repeat 1 46 0 455 307 73 13 chr11 44313654 44313954 -104469518 - MER31-int LTR ERV1 -2163 2773 2456 197 337 69 0 chr11 44314173 44314274 -104469198 + MIR SINE MIR 77 184 -78 2112 145 13 26 chr11 44315789 44316168 -104467304 - THE1C LTR MaLR -1 374 1 2544 51 0 13 chr11 44316173 44316484 -104466988 - AluY SINE Alu -4 307 1 708 258 40 27 chr11 44317240 44317465 -104466007 + L2 LINE L2 3085 3312 -1 180 0 0 0 chr11 44317737 44317757 -104465715 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 185 260 312 0 chr11 44317778 44317855 -104465617 - L2 LINE L2 -47 3225 3125 1094 233 78 3 chr11 44317993 44318276 -104465196 - L1ME1 LINE L1 -297 5869 5566 2084 131 39 28 chr11 44318326 44318684 -104464788 + THE1B LTR MaLR 3 364 0 303 167 0 0 chr11 44318684 44318732 -104464740 + MLT1C LTR MaLR 420 467 0 1560 258 68 29 chr11 44318732 44319432 -104464040 - L1ME1 LINE L1 -743 5403 4691 564 168 13 7 chr11 44320041 44320196 -104463276 + (TA)n Simple_repeat Simple_repeat 2 157 0 244 289 35 136 chr11 44320799 44320893 -104462579 + MLT1I LTR MaLR 1 103 -306 1642 189 14 3 chr11 44320893 44321190 -104462282 - AluJb SINE Alu -8 304 5 244 289 35 136 chr11 44321190 44321323 -104462149 + MLT1I LTR MaLR 103 205 -204 304 340 92 0 chr11 44321784 44321925 -104461547 + L2 LINE L2 2919 3072 -241 1709 137 7 33 chr11 44321948 44322248 -104461224 - THE1B LTR MaLR 0 364 73 697 234 74 27 chr11 44322523 44322780 -104460692 + L1MEc LINE L1 1645 1913 -4483 1206 275 52 39 chr11 44322798 44323020 -104460452 + L1MEc LINE L1 1868 2086 -4129 1914 127 68 3 chr11 44323020 44323312 -104460160 + AluSx SINE Alu 1 311 -1 1206 275 52 39 chr11 44323312 44323791 -104459681 + L1MEc LINE L1 2086 2547 -3668 1163 260 0 6 chr11 44323844 44324186 -104459286 + L1MEc LINE L1 2651 2990 -3225 629 201 28 35 chr11 44324192 44324336 -104459136 - MLT1A1 LTR MaLR -143 222 80 1351 245 56 49 chr11 44324337 44324857 -104458615 - MER39 LTR ERV1 0 707 1 447 121 15 0 chr11 44324857 44324923 -104458549 - MLT1A2 LTR MaLR -291 83 17 1157 150 47 0 chr11 44325129 44325322 -104458150 + MER2 DNA MER2_type 1 202 -143 22 0 0 0 chr11 44325358 44325380 -104458092 + AT_rich Low_complexity Low_complexity 1 22 0 322 292 50 17 chr11 44325628 44325748 -104457724 - MIR SINE MIR -10 252 129 31 0 0 0 chr11 44325771 44325802 -104457670 + AT_rich Low_complexity Low_complexity 1 31 0 211 263 13 0 chr11 44327596 44327672 -104455800 + (TG)n Simple_repeat Simple_repeat 1 77 0 249 299 65 9 chr11 44331626 44331733 -104451739 + MIR SINE MIR 94 206 -56 27 29 0 0 chr11 44332240 44332274 -104451198 + AT_rich Low_complexity Low_complexity 1 34 0 305 298 89 16 chr11 44332411 44332535 -104450937 + MIR SINE MIR 98 230 -32 186 43 0 0 chr11 44334227 44334250 -104449222 + (CA)n Simple_repeat Simple_repeat 2 24 0 314 275 36 58 chr11 44335000 44335138 -104448334 - MIR SINE MIR -109 153 19 261 183 167 67 chr11 44336712 44336832 -104446640 - MIR SINE MIR -1 261 130 2187 120 3 0 chr11 44337020 44337321 -104446151 + AluSq SINE Alu 1 302 -11 183 42 0 0 chr11 44337483 44337507 -104445965 + (A)n Simple_repeat Simple_repeat 1 24 0 200 128 26 26 chr11 44338712 44338751 -104444721 - MIR SINE MIR -29 233 195 273 98 0 0 chr11 44338760 44338801 -104444671 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 389 11 0 chr11 44339416 44339506 -104443966 + MIR SINE MIR 158 248 -14 23 33 0 0 chr11 44339515 44339545 -104443927 + AT_rich Low_complexity Low_complexity 1 30 0 611 256 34 23 chr11 44341083 44341259 -104442213 - MIR SINE MIR -70 192 15 665 279 113 78 chr11 44341588 44342103 -104441369 + MLT1H1 LTR MaLR 18 555 0 218 250 0 0 chr11 44342333 44342385 -104441087 - L2 LINE L2 0 3313 3262 237 65 0 0 chr11 44342479 44342510 -104440962 + (CA)n Simple_repeat Simple_repeat 2 32 0 365 414 7 26 chr11 44342631 44342823 -104440649 - MIR SINE MIR -69 139 3 2355 92 3 0 chr11 44343275 44343570 -104439902 + AluSp SINE Alu 2 297 -16 1817 188 9 3 chr11 44343858 44344199 -104439273 + MER2 DNA MER2_type 2 344 0 1963 136 13 22 chr11 44344454 44344826 -104438646 + AluSq SINE Alu 1 369 0 1644 195 3 7 chr11 44344840 44345148 -104438324 - AluJb SINE Alu -2 310 4 180 0 0 0 chr11 44345267 44345287 -104438185 + (A)n Simple_repeat Simple_repeat 1 20 0 234 0 0 0 chr11 44345301 44345327 -104438145 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2725 42 0 0 chr11 44345608 44345918 -104437554 + AluY SINE Alu 1 310 -1 377 303 98 25 chr11 44346010 44346287 -104437185 + L1ME LINE L1 5484 5780 -341 1295 207 58 55 chr11 44347406 44347769 -104435703 - THE1C LTR MaLR -11 364 1 243 313 119 34 chr11 44347959 44348135 -104435337 + L2 LINE L2 2524 2714 -600 1291 194 26 47 chr11 44348135 44348272 -104435200 + L1PB4 LINE L1 4927 5065 -1086 198 0 0 0 chr11 44348272 44348294 -104435178 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1291 194 26 47 chr11 44348294 44348555 -104434917 + L1PB4 LINE L1 5065 5319 -832 4437 147 60 12 chr11 44348662 44349460 -104434012 + L1PB4 LINE L1 5319 6154 -2 465 226 35 0 chr11 44350315 44350430 -104433042 - MER31-int LTR ERV1 -3789 1147 1029 424 252 126 0 chr11 44350661 44350780 -104432692 - MER92B LTR ERV1 -502 134 1 615 323 0 0 chr11 44350780 44350947 -104432525 - MIR SINE MIR -88 174 8 297 0 0 0 chr11 44351054 44351087 -104432385 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 180 216 0 0 chr11 44351192 44351243 -104432229 + (TA)n Simple_repeat Simple_repeat 1 51 0 1471 201 24 30 chr11 44351689 44351890 -104431582 - MER2 DNA MER2_type -14 331 131 3909 191 41 24 chr11 44351890 44352513 -104430959 + MER6 DNA MER2_type 1 644 -221 1756 181 3 13 chr11 44352513 44352812 -104430660 - AluJb SINE Alu -10 302 7 3909 191 41 24 chr11 44352812 44353038 -104430434 + MER6 DNA MER2_type 644 865 0 1471 201 24 30 chr11 44353038 44353169 -104430303 - MER2 DNA MER2_type -214 131 1 285 29 0 0 chr11 44353437 44353471 -104430001 + (A)n Simple_repeat Simple_repeat 1 34 0 229 301 130 24 chr11 44353787 44353910 -104429562 - MIR SINE MIR -49 213 78 684 142 71 61 chr11 44355126 44355323 -104428149 - THE1B LTR MaLR -165 199 1 234 310 28 48 chr11 44355336 44355481 -104427991 + L2 LINE L2 3112 3253 -60 1638 183 0 53 chr11 44355515 44355838 -104427634 + AluJb SINE Alu 1 306 -6 2244 281 47 23 chr11 44355878 44356589 -104426883 + L1MEc LINE L1 35 772 -5624 1541 98 5 49 chr11 44356589 44356813 -104426659 + AluSg/x SINE Alu 88 301 -9 2244 281 47 23 chr11 44356813 44356973 -104426499 + L1MEc LINE L1 772 927 -5469 245 305 69 5 chr11 44357524 44357727 -104425745 - L1MEc LINE L1 -3821 2394 2179 3478 172 43 3 chr11 44358049 44358694 -104424778 + LTR51 LTR ERV1 1 671 0 317 270 50 10 chr11 44358895 44358995 -104424477 - L2 LINE L2 0 3313 3210 585 332 125 19 chr11 44358995 44359411 -104424061 - L1MEc LINE L1 -4678 1718 1259 263 179 15 0 chr11 44359475 44359542 -104423930 + (TA)n Simple_repeat Simple_repeat 2 69 0 395 309 70 62 chr11 44359717 44359801 -104423671 - L1MEc LINE L1 -5191 1014 932 2096 138 0 3 chr11 44359801 44360106 -104423366 - AluSg SINE Alu -6 304 1 395 309 70 62 chr11 44360106 44360503 -104422969 - L1MEc LINE L1 -5273 932 529 201 108 0 0 chr11 44360603 44360640 -104422832 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 207 139 0 0 chr11 44361454 44361490 -104421982 + (TG)n Simple_repeat Simple_repeat 2 37 0 235 317 0 0 chr11 44362430 44362531 -104420941 + A-rich Low_complexity Low_complexity 1 101 0 273 297 40 10 chr11 44364144 44364245 -104419227 + L2 LINE L2 3168 3271 -1 259 191 60 0 chr11 44364542 44364626 -104418846 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 203 295 32 0 chr11 44364672 44364767 -104418705 + (TA)n Simple_repeat Simple_repeat 2 99 0 26 30 0 0 chr11 44365418 44365451 -104418021 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr11 44365563 44365592 -104417880 + AT_rich Low_complexity Low_complexity 1 29 0 183 321 86 12 chr11 44365597 44365678 -104417794 + L2 LINE L2 2926 3012 -260 30 27 0 0 chr11 44366194 44366231 -104417241 + AT_rich Low_complexity Low_complexity 1 37 0 1678 178 31 7 chr11 44366312 44366599 -104416873 - AluJb SINE Alu -18 294 1 289 303 78 31 chr11 44366644 44367027 -104416445 - L1MC5 LINE L1 -225 7736 7336 257 308 8 68 chr11 44369007 44369124 -104414348 + MIR SINE MIR 82 191 -71 2276 75 0 31 chr11 44369279 44369598 -104413874 - AluY SINE Alu -2 309 1 201 39 0 0 chr11 44370380 44370406 -104413066 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 1429 191 16 40 chr11 44370611 44370751 -104412721 + AluJo SINE Alu 1 143 -169 2321 107 11 8 chr11 44370751 44371105 -104412367 - THE1A LTR MaLR 0 355 1 1429 191 16 40 chr11 44371105 44371268 -104412204 + AluJo SINE Alu 143 297 -15 514 330 47 43 chr11 44371507 44371786 -104411686 + L2 LINE L2 2583 2862 -452 1239 108 0 47 chr11 44371892 44372105 -104411367 - L1PA13 LINE L1 0 6163 5961 217 154 0 58 chr11 44373788 44373840 -104409632 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 199 305 16 78 chr11 44374010 44374138 -104409334 - MER5A DNA MER1_type -23 166 47 1745 159 98 17 chr11 44374524 44374883 -104408589 - MLT1B LTR MaLR -2 388 1 32 0 0 0 chr11 44374938 44374970 -104408502 + AT_rich Low_complexity Low_complexity 1 32 0 624 27 0 0 chr11 44375199 44375273 -104408199 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 495 297 74 39 chr11 44375398 44375627 -104407845 - MIR SINE MIR -14 248 12 3286 152 10 0 chr11 44375916 44376437 -104407035 - MER1A DNA MER1_type -1 526 1 2178 98 11 0 chr11 44376882 44377168 -104406304 + AluSx SINE Alu 7 295 -17 1292 206 157 38 chr11 44378417 44378868 -104404604 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr11 44379487 44379508 -104403964 + AT_rich Low_complexity Low_complexity 1 21 0 333 354 39 43 chr11 44380619 44380893 -104402579 + L2 LINE L2 2771 3058 -214 1689 173 0 3 chr11 44381243 44381552 -104401920 - AluSx SINE Alu 0 308 1 426 339 60 6 chr11 44381627 44381810 -104401662 + MIR SINE MIR 13 205 -57 5297 195 59 7 chr11 44381942 44383659 -104399813 - L1MC1 LINE L1 -18 6315 4526 198 313 52 21 chr11 44384157 44384253 -104399219 - MIR SINE MIR -78 184 86 180 152 0 0 chr11 44384295 44384328 -104399144 + CT-rich Low_complexity Low_complexity 2 34 0 286 219 14 14 chr11 44384411 44384484 -104398988 + MER103 DNA DNA 31 103 -63 285 254 28 0 chr11 44385672 44385743 -104397729 + MER116 DNA Mariner 3 75 -5 13667 230 35 23 chr11 44386208 44390165 -104393307 - L1PA12 LINE L1 -744 6053 2083 414 57 0 0 chr11 44390180 44390233 -104393239 + (TG)n Simple_repeat Simple_repeat 2 54 0 1371 207 0 26 chr11 44390238 44390508 -104392964 - AluJo SINE Alu -49 263 1 1394 198 9 27 chr11 44390508 44390842 -104392630 - L1PA12 LINE L1 -4711 2076 1749 2521 74 0 0 chr11 44390916 44391226 -104392246 - AluY SINE Alu 0 311 2 1839 147 76 34 chr11 44391257 44391637 -104391835 + Charlie1b DNA MER1_type 1 396 -127 1973 239 28 4 chr11 44391648 44391956 -104391516 - L1PA12 LINE L1 -5026 1761 1437 230 71 0 24 chr11 44391956 44391998 -104391474 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1973 239 28 4 chr11 44391998 44392157 -104391315 - L1PA12 LINE L1 -5350 1437 1283 * 2139 322 54 26 chr11 44392127 44392904 -104390568 - L1PA12 LINE L1 -5988 799 1 24 0 0 0 chr11 44393052 44393076 -104390396 + AT_rich Low_complexity Low_complexity 1 24 0 255 251 22 0 chr11 44393503 44393570 -104389902 + MIR SINE MIR 84 140 -68 409 283 35 0 chr11 44394684 44394829 -104388643 + MER103 DNA DNA 17 166 0 384 385 27 23 chr11 44395714 44395974 -104387498 - L2 LINE L2 -474 2840 2580 2431 50 20 0 chr11 44396937 44397234 -104386238 + AluY SINE Alu 1 303 -8 234 0 0 0 chr11 44398064 44398090 -104385382 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1079 226 109 44 chr11 44398233 44398663 -104384809 + MLT1C LTR MaLR 6 463 -4 1970 142 0 0 chr11 44398713 44399022 -104384450 - AluSx SINE Alu 0 311 3 543 334 28 14 chr11 44400620 44400845 -104382627 - MIR SINE MIR 0 262 35 307 319 31 62 chr11 44401229 44401389 -104382083 + MIR SINE MIR 57 211 -51 201 74 0 0 chr11 44402490 44402517 -104380955 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 6012 108 9 0 chr11 44402741 44404053 -104379419 - L1PA8 LINE L1 -2 6170 4856 1459 207 33 37 chr11 44404113 44404413 -104379059 + AluJo SINE Alu 3 301 -11 227 333 175 0 chr11 44405496 44405616 -104377856 - L2 LINE L2 -3 3269 3129 237 239 11 120 chr11 44405730 44405822 -104377650 - L2 LINE L2 0 3272 3191 218 298 58 84 chr11 44405820 44406011 -104377461 - L2 LINE L2 -36 3277 3092 * 315 0 0 0 chr11 44406560 44406595 -104376877 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1230 201 7 71 chr11 44406597 44406906 -104376566 - AluJo SINE Alu -23 289 1 462 278 139 6 chr11 44409399 44409572 -104373900 - L1M4 LINE L1 -1501 4645 4450 906 163 42 12 chr11 44409579 44409745 -104373727 - MER6B DNA MER2_type -39 171 1 922 262 84 17 chr11 44409803 44410277 -104373195 - L1M4 LINE L1 -1736 4410 3905 1453 253 67 34 chr11 44410280 44411177 -104372295 - L1ME LINE L1 -4135 1945 851 2172 116 3 3 chr11 44411177 44411478 -104371994 - AluSx SINE Alu -11 301 1 1453 253 67 34 chr11 44411478 44411612 -104371860 - L1ME LINE L1 -5229 851 723 473 323 61 50 chr11 44411608 44412424 -104371048 - L1ME LINE L1 -5235 835 12 * 1042 300 70 43 chr11 44413157 44413550 -104369922 - LTR16A LTR ERVL 0 457 49 2235 151 9 86 chr11 44413550 44413953 -104369519 - MSTC LTR MaLR 0 428 64 1983 143 3 3 chr11 44413953 44414254 -104369218 + AluJb SINE Alu 1 301 -11 2235 151 9 86 chr11 44414254 44414314 -104369158 - MSTC LTR MaLR -364 64 1 1042 300 70 43 chr11 44414314 44414360 -104369112 - LTR16A LTR ERVL -408 49 6 180 200 40 60 chr11 44414382 44414432 -104369040 + MIR SINE MIR 123 171 -91 304 93 67 0 chr11 44414454 44414529 -104368943 + (TA)n Simple_repeat Simple_repeat 2 81 0 204 196 59 0 chr11 44414820 44414871 -104368601 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 243 125 0 0 chr11 44415077 44415117 -104368355 + (GA)n Simple_repeat Simple_repeat 2 41 0 231 250 0 0 chr11 44415429 44415489 -104367983 + (TG)n Simple_repeat Simple_repeat 1 60 0 434 304 83 6 chr11 44415855 44416023 -104367449 + MLT1K LTR MaLR 1 181 -407 543 335 60 39 chr11 44416050 44416331 -104367141 + MLT1K LTR MaLR 238 524 -64 303 264 34 91 chr11 44416579 44416787 -104366685 - L1ME LINE L1 -331 5790 5595 2422 181 39 8 chr11 44416789 44417308 -104366164 - L1MA9 LINE L1 -2 6310 5776 21 0 0 0 chr11 44417315 44417336 -104366136 + AT_rich Low_complexity Low_complexity 1 21 0 258 0 0 67 chr11 44417353 44417398 -104366074 + (TA)n Simple_repeat Simple_repeat 2 43 0 430 176 0 0 chr11 44417414 44417493 -104365979 - L1M4 LINE L1 -393 5781 5703 223 343 101 26 chr11 44417863 44418131 -104365341 - L2 LINE L2 -405 2909 2622 310 303 141 40 chr11 44418804 44419002 -104364470 + MIR SINE MIR 10 227 -35 279 114 0 0 chr11 44419353 44419397 -104364075 + (CA)n Simple_repeat Simple_repeat 2 45 0 2550 107 3 8 chr11 44419828 44420194 -104363278 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 44420595 44420616 -104362856 + AT_rich Low_complexity Low_complexity 1 21 0 333 241 80 44 chr11 44421010 44421147 -104362325 - MER112 DNA MER1_type -102 158 17 247 136 0 0 chr11 44421239 44421283 -104362189 - L1PA14 LINE L1 -4 6157 6114 1879 175 46 36 chr11 44421283 44421826 -104361646 - MLT2A2 LTR ERVL 0 554 1 956 92 21 0 chr11 44421826 44421968 -104361504 - L1PA14 LINE L1 -43 6118 5974 356 40 20 0 chr11 44422089 44422139 -104361333 + (TTG)n Simple_repeat Simple_repeat 1 51 0 333 0 0 0 chr11 44422195 44422232 -104361240 + (CA)n Simple_repeat Simple_repeat 2 38 0 256 258 165 0 chr11 44423198 44423295 -104360177 - MIR SINE MIR -10 252 140 2196 101 3 16 chr11 44423359 44423666 -104359806 - AluSp SINE Alu -10 303 1 273 372 0 11 chr11 44423716 44423810 -104359662 - MER5A DNA MER1_type -93 96 4 26 0 0 0 chr11 44423925 44423951 -104359521 + AT_rich Low_complexity Low_complexity 1 26 0 207 161 0 0 chr11 44424883 44424914 -104358558 + (TG)n Simple_repeat Simple_repeat 2 32 0 272 261 63 42 chr11 44425032 44425174 -104358298 + MLT1I LTR MaLR 264 408 -1 197 349 70 59 chr11 44425320 44425592 -104357880 + L3 LINE CR1 1179 1453 -124 2234 117 0 0 chr11 44425645 44425943 -104357529 + AluSq SINE Alu 1 298 -15 363 284 114 62 chr11 44426034 44426253 -104357219 + MIR SINE MIR 32 262 0 1000 239 89 96 chr11 44426506 44427189 -104356283 + MLT1E2 LTR MaLR 1 624 0 1659 172 10 38 chr11 44427959 44428283 -104355189 + AluJb SINE Alu 1 316 0 454 353 25 11 chr11 44429664 44430024 -104353448 - L1ME4a LINE L1 -202 5919 5555 180 158 0 0 chr11 44430164 44430202 -104353270 + (TAA)n Simple_repeat Simple_repeat 2 39 0 254 324 52 69 chr11 44430480 44430653 -104352819 - MIR SINE MIR -61 201 32 213 65 0 0 chr11 44431516 44431547 -104351925 + (T)n Simple_repeat Simple_repeat 1 31 0 216 222 44 56 chr11 44431938 44432028 -104351444 - MIR SINE MIR -13 249 161 2029 284 11 13 chr11 44432043 44432578 -104350894 - MLT1F LTR MaLR -6 536 3 1826 88 4 0 chr11 44432999 44433249 -104350223 - L1PA6 LINE L1 0 6154 5904 189 250 0 0 chr11 44433433 44433473 -104349999 + L2 LINE L2 3264 3303 -10 291 274 0 40 chr11 44434546 44434670 -104348802 + MLT1L LTR MaLR 397 515 -100 289 330 228 14 chr11 44435205 44435420 -104348052 - MIR SINE MIR 0 262 2 25 31 0 0 chr11 44436968 44437000 -104346472 + AT_rich Low_complexity Low_complexity 1 32 0 617 317 20 45 chr11 44437168 44437438 -104346034 - MIR SINE MIR 0 262 1 344 364 80 34 chr11 44437500 44437739 -104345733 - L3 LINE CR1 -428 1149 900 2061 111 4 0 chr11 44438729 44439008 -104344464 + AluSp SINE Alu 24 303 -10 443 301 86 34 chr11 44441109 44441318 -104342154 + L2 LINE L2 3094 3313 0 475 202 0 0 chr11 44441665 44441764 -104341708 + MER96B DNA MER1_type? 14 112 -305 637 84 0 0 chr11 44441787 44441870 -104341602 - LTR5 LTR ERVK -91 878 796 203 56 56 0 chr11 44441870 44441906 -104341566 + T-rich Low_complexity Low_complexity 2 39 0 6669 60 4 43 chr11 44441906 44442884 -104340588 - SVA Other Other -17 1369 430 1640 97 13 74 chr11 44443291 44443753 -104339719 - SVA Other Other -520 866 433 5291 74 36 54 chr11 44443857 44444684 -104338788 - SVA Other Other -518 868 57 381 22 0 0 chr11 44444684 44444730 -104338742 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 649 169 7 14 chr11 44444731 44444873 -104338599 + MER96B DNA MER1_type? 98 238 -179 392 206 14 138 chr11 44445790 44446008 -104337464 + L1MC4 LINE L1 7836 8026 -16 22 0 0 0 chr11 44446266 44446288 -104337184 + AT_rich Low_complexity Low_complexity 1 22 0 323 361 78 10 chr11 44447789 44447994 -104335478 - L3 LINE CR1 -126 1451 1233 2981 178 26 0 chr11 44448593 44449165 -104334307 + L1PB4 LINE L1 5569 6155 -1 298 297 27 118 chr11 44449415 44449711 -104333761 + MLT1J LTR MaLR 127 395 -116 22 35 0 0 chr11 44449875 44449904 -104333568 + AT_rich Low_complexity Low_complexity 1 29 0 2048 244 2 7 chr11 44450348 44450892 -104332580 + L1 LINE L1 3576 4116 -2030 2053 127 0 0 chr11 44451210 44451494 -104331978 + AluSx SINE Alu 16 299 -13 217 222 0 0 chr11 44453835 44453880 -104329592 + (TG)n Simple_repeat Simple_repeat 2 46 0 1993 123 3 3 chr11 44453913 44454245 -104329227 + AluSq SINE Alu 1 332 0 203 162 0 0 chr11 44454554 44454591 -104328881 + A-rich Low_complexity Low_complexity 3 39 0 234 314 50 29 chr11 44454606 44454845 -104328627 - L1ME4a LINE L1 -169 5952 5709 40 37 0 0 chr11 44455237 44455291 -104328181 + AT_rich Low_complexity Low_complexity 1 54 0 549 311 58 40 chr11 44455329 44455657 -104327815 - MLT1I LTR MaLR -7 402 69 24 32 0 0 chr11 44456742 44456773 -104326699 + AT_rich Low_complexity Low_complexity 1 31 0 1223 207 29 88 chr11 44458138 44458549 -104324923 - MLT1B LTR MaLR 0 390 4 1413 207 44 26 chr11 44458764 44459286 -104324186 + MLT1E1 LTR MaLR 22 611 -43 311 275 180 24 chr11 44459720 44459887 -104323585 + L2 LINE L2 3118 3310 -3 480 93 67 0 chr11 44460409 44460458 -104323014 + MADE1 DNA Mariner 1 58 -22 203 61 30 0 chr11 44460458 44460491 -104322981 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 480 93 67 0 chr11 44460491 44460516 -104322956 + MADE1 DNA Mariner 58 80 0 335 181 0 24 chr11 44461071 44461154 -104322318 + CT-rich Low_complexity Low_complexity 2 82 0 2230 90 0 0 chr11 44461793 44462120 -104321352 + AluY SINE Alu 4 330 0 250 354 41 48 chr11 44462391 44462538 -104320934 + L2 LINE L2 3123 3268 -4 406 143 22 0 chr11 44462646 44462737 -104320735 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 200 363 48 0 chr11 44463434 44463580 -104319892 - L2 LINE L2 -1283 2031 1879 382 174 0 0 chr11 44463602 44463671 -104319801 + L1PB4 LINE L1 4490 4558 -1588 866 110 0 0 chr11 44463671 44463789 -104319683 - AluY SINE Alu -3 308 191 3883 197 35 15 chr11 44463789 44465370 -104318102 + L1PB4 LINE L1 4549 6153 -3 2427 66 0 10 chr11 44465381 44465686 -104317786 + AluY SINE Alu 1 302 -9 1867 163 3 0 chr11 44465938 44466227 -104317245 + AluSx SINE Alu 6 295 -17 486 231 142 0 chr11 44466271 44466405 -104317067 + MIR SINE MIR 110 262 0 265 295 0 0 chr11 44466951 44467012 -104316460 + MIR SINE MIR 61 121 -87 1669 201 0 19 chr11 44467798 44468107 -104315365 + AluJb SINE Alu 1 303 -9 27 49 0 0 chr11 44468397 44468438 -104315034 + AT_rich Low_complexity Low_complexity 1 41 0 412 379 57 25 chr11 44468713 44469191 -104314281 + LTR67 LTR ERVL 50 542 -15 1321 199 23 15 chr11 44469390 44469651 -104313821 + Tigger7 DNA MER2_type 1 263 -2224 346 217 120 0 chr11 44469644 44469736 -104313736 + Tigger7 DNA MER2_type 2484 2586 -1 * 443 305 39 13 chr11 44471577 44471731 -104311741 - MIR SINE MIR -102 160 3 258 188 72 14 chr11 44472295 44472364 -104311108 + (CAGAGA)n Simple_repeat Simple_repeat 1 73 0 299 272 15 44 chr11 44472584 44472720 -104310752 + GA-rich Low_complexity Low_complexity 1 132 0 2073 139 3 7 chr11 44472802 44473103 -104310369 - AluSx SINE Alu -12 300 1 400 308 6 26 chr11 44473103 44473195 -104310277 + MIR SINE MIR 119 211 -51 201 74 0 0 chr11 44473195 44473222 -104310250 + (CA)n Simple_repeat Simple_repeat 1 27 0 400 308 6 26 chr11 44473222 44473274 -104310198 + MIR SINE MIR 211 262 0 3610 158 29 11 chr11 44473780 44474478 -104308994 - MER50 LTR ERV1 -24 710 1 22 0 0 0 chr11 44474583 44474605 -104308867 + AT_rich Low_complexity Low_complexity 1 22 0 385 346 85 55 chr11 44475169 44475568 -104307904 + L2 LINE L2 2847 3257 -15 232 303 0 11 chr11 44476026 44476115 -104307357 - MER112 DNA MER1_type -8 252 165 360 353 35 6 chr11 44476288 44476461 -104307011 - MER5B DNA MER1_type 0 178 1 323 145 0 29 chr11 44476753 44476822 -104306650 - L1PA16 LINE L1 -16 6150 6084 2034 189 39 50 chr11 44476927 44477452 -104306020 - L1MA9 LINE L1 0 6312 5783 2302 106 6 0 chr11 44477452 44477763 -104305709 - AluSq SINE Alu 0 313 1 2034 189 39 50 chr11 44477763 44477804 -104305668 - L1MA9 LINE L1 -529 5783 5783 245 29 29 0 chr11 44477804 44477838 -104305634 + (TG)n Simple_repeat Simple_repeat 2 36 0 2034 189 39 50 chr11 44477838 44477912 -104305560 - L1MA9 LINE L1 -528 5784 5711 329 243 187 9 chr11 44478266 44478373 -104305099 + L2 LINE L2 3147 3272 0 313 264 186 21 chr11 44479837 44479977 -104303495 - MER45A DNA AcHobo -1 177 15 2609 110 3 3 chr11 44480320 44480684 -104302788 + THE1B LTR MaLR 1 364 0 317 136 51 0 chr11 44481833 44481892 -104301580 + MSTD LTR MaLR 292 353 -43 477 121 0 0 chr11 44481897 44481963 -104301509 + AluS SINE Alu 1 66 -247 709 179 15 51 chr11 44484567 44484762 -104298710 - MER53 DNA DNA -1 188 1 288 180 16 0 chr11 44484764 44484825 -104298647 - L1MC4 LINE L1 -59 7983 7922 1567 166 58 60 chr11 44484835 44485182 -104298290 + MSTD LTR MaLR 1 348 -48 2196 111 10 3 chr11 44485182 44485480 -104297992 + AluSq SINE Alu 1 300 -13 1567 166 58 60 chr11 44485480 44485529 -104297943 + MSTD LTR MaLR 348 396 0 662 257 122 4 chr11 44485609 44485854 -104297618 - L1MC4 LINE L1 -222 7820 7547 * 3045 132 31 2 chr11 44485846 44486392 -104297080 - L1PA13 LINE L1 -348 5815 5254 2404 118 8 0 chr11 44486395 44486758 -104296714 + L1PA13 LINE L1 5784 6149 -14 704 217 0 0 chr11 44486760 44486903 -104296569 - L1MC4 LINE L1 -484 7558 7416 789 228 0 6 chr11 44487233 44487400 -104296072 + FRAM SINE Alu 1 166 -10 1955 131 20 26 chr11 44488258 44488564 -104294908 - AluSx SINE Alu -8 304 1 2240 123 7 0 chr11 44488948 44489257 -104294215 - AluSx SINE Alu -1 311 1 270 294 126 14 chr11 44492313 44492456 -104291016 + L3b LINE CR1 1239 1397 -186 382 309 39 11 chr11 44492617 44492795 -104290677 - MER117 DNA MER1_type -7 190 8 210 208 0 21 chr11 44493022 44493070 -104290402 + A-rich Low_complexity Low_complexity 2 48 0 22 0 0 0 chr11 44494128 44494150 -104289322 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr11 44494231 44494254 -104289218 + (A)n Simple_repeat Simple_repeat 1 23 0 803 311 8 4 chr11 44494332 44494570 -104288902 + MIR SINE MIR 2 240 -22 752 294 42 35 chr11 44496078 44496391 -104287081 - L2 LINE L2 0 3313 2999 301 167 74 0 chr11 44496427 44496481 -104286991 - MIR SINE MIR -86 176 119 395 164 214 50 chr11 44496496 44496655 -104286817 + MER53 DNA DNA 2 186 -3 21 36 0 0 chr11 44497304 44497332 -104286140 + AT_rich Low_complexity Low_complexity 1 28 0 1681 173 8 23 chr11 44497965 44498352 -104285120 + L1MD1 LINE L1 5300 5680 -562 2245 156 13 5 chr11 44498377 44498768 -104284704 - L1PA15 LINE L1 -4 6161 5768 2687 122 22 28 chr11 44498773 44499095 -104284377 - L1P4 LINE L1 -352 5813 5491 2423 72 10 0 chr11 44499095 44499399 -104284073 - AluY SINE Alu -4 307 1 2687 122 22 28 chr11 44499399 44499597 -104283875 - L1P4 LINE L1 -674 5491 5159 1164 146 7 114 chr11 44499583 44499891 -104283581 + L1MD1 LINE L1 5698 5972 -270 * 249 370 42 0 chr11 44500094 44500213 -104283259 + MIR3 SINE MIR 82 205 -3 346 242 0 22 chr11 44501102 44501193 -104282279 - MIR SINE MIR -2 260 172 323 326 0 43 chr11 44501376 44501517 -104281955 - L2 LINE L2 0 3313 3179 4629 297 140 38 chr11 44501757 44503107 -104280365 - L2 LINE L2 -337 2977 1766 2387 100 0 0 chr11 44503107 44503407 -104280065 - AluSg SINE Alu -10 300 1 4629 297 140 38 chr11 44503407 44504628 -104278844 - L2 LINE L2 -1548 1766 144 453 108 66 24 chr11 44504908 44505075 -104278397 + (TG)n Simple_repeat Simple_repeat 1 174 0 575 137 34 23 chr11 44505097 44505272 -104278200 + (TG)n Simple_repeat Simple_repeat 1 177 0 248 331 78 42 chr11 44507550 44507692 -104275780 + MIR SINE MIR 2 148 -114 709 296 57 17 chr11 44508214 44508444 -104275028 - MIR SINE MIR -16 246 8 510 296 90 34 chr11 44509269 44509536 -104273936 - L2 LINE L2 0 3313 3032 343 66 0 0 chr11 44509607 44509657 -104273815 + Alu SINE Alu 4 47 -255 2498 110 6 3 chr11 44510768 44511122 -104272350 + THE1A LTR MaLR 1 355 0 11096 95 5 48 chr11 44511122 44512774 -104270698 + THE1A-int LTR MaLR 1 1580 0 527 105 13 0 chr11 44512774 44512850 -104270622 + THE1A LTR MaLR 1 77 -287 1409 291 115 25 chr11 44512950 44513551 -104269921 - L2 LINE L2 -420 2894 2240 262 308 151 7 chr11 44515066 44515212 -104268260 + L3 LINE CR1 1154 1320 -257 278 301 36 0 chr11 44515245 44515328 -104268144 + MIR SINE MIR 111 196 -66 269 280 101 36 chr11 44515925 44516093 -104267379 + L3 LINE CR1 1378 1556 -21 985 252 87 50 chr11 44516121 44516298 -104267174 + MLT1D LTR MaLR 27 196 -309 2106 134 0 0 chr11 44516298 44516597 -104266875 + AluSx SINE Alu 1 299 -13 985 252 87 50 chr11 44516597 44516879 -104266593 + MLT1D LTR MaLR 196 503 -2 303 332 107 38 chr11 44517328 44517674 -104265798 - L2 LINE L2 0 3313 2944 308 374 55 0 chr11 44518373 44518536 -104264936 + MIR3 SINE MIR 37 208 0 488 305 80 44 chr11 44519214 44519463 -104264009 - MIR SINE MIR 0 262 5 1569 215 3 3 chr11 44519530 44519828 -104263644 + AluJb SINE Alu 5 302 -10 34225 100 11 14 chr11 44520094 44522431 -104261041 + L1PA6 LINE L1 11 2352 -3802 189 74 0 0 chr11 44522431 44522458 -104261014 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 34225 100 11 14 chr11 44522458 44526270 -104257202 + L1PA6 LINE L1 2352 6143 -11 1649 155 8 0 chr11 44526377 44526641 -104256831 + THE1A LTR MaLR 90 355 0 2247 98 10 10 chr11 44526698 44527005 -104256467 + AluY SINE Alu 1 307 -4 463 312 66 36 chr11 44527267 44527628 -104255844 + L1ME3A LINE L1 793 1039 -5166 375 304 12 60 chr11 44527653 44527988 -104255484 + L1ME3A LINE L1 1041 1359 -4856 857 301 30 21 chr11 44527999 44528335 -104255137 + L1ME1 LINE L1 5822 6160 -6 286 260 61 31 chr11 44528617 44528673 -104254799 + L1ME3A LINE L1 2178 2231 -3984 808 270 89 60 chr11 44528673 44529121 -104254351 - LTR16B LTR ERVL -3 461 1 286 260 61 31 chr11 44529121 44529357 -104254115 + L1ME3A LINE L1 2231 2445 -3770 2234 152 19 3 chr11 44529525 44529894 -104253578 + THE1C LTR MaLR 1 375 0 1505 259 57 49 chr11 44530080 44530933 -104252539 + L1ME3A LINE L1 4392 5251 -964 276 262 0 103 chr11 44531281 44531388 -104252084 + MLT1H LTR MaLR 454 549 0 2004 147 3 0 chr11 44532494 44532786 -104250686 - AluSg SINE Alu -17 293 1 541 298 60 57 chr11 44533057 44533322 -104250150 + MLT1H LTR MaLR 43 308 -241 236 235 118 0 chr11 44533345 44533430 -104250042 + L1ME3A LINE L1 5590 5684 -555 183 129 0 0 chr11 44533466 44533497 -104249975 + (TATG)n Simple_repeat Simple_repeat 2 32 0 650 301 37 20 chr11 44533524 44533572 -104249900 + L1ME3A LINE L1 5915 5961 -278 2423 77 0 3 chr11 44533572 44533882 -104249590 + AluY SINE Alu 1 309 -2 650 301 37 20 chr11 44533882 44534132 -104249340 + L1ME3A LINE L1 5961 6218 -21 21 57 0 0 chr11 44534898 44534933 -104248539 + AT_rich Low_complexity Low_complexity 1 35 0 1515 161 41 8 chr11 44535199 44535466 -104248006 - AluJb SINE Alu -8 304 29 2679 194 39 2 chr11 44536687 44537224 -104246248 - L1MB1 LINE L1 -24 5968 5412 308 132 0 0 chr11 44537224 44537277 -104246195 - LTR9 LTR ERV1 -559 53 1 3607 258 56 63 chr11 44537278 44539524 -104243948 - L1MB1 LINE L1 -2671 3299 1369 1970 146 0 0 chr11 44539524 44539853 -104243619 - AluSx SINE Alu 0 329 1 3607 258 56 63 chr11 44539853 44541209 -104242263 - L1MB1 LINE L1 -4601 1369 6 716 193 7 0 chr11 44541294 44541434 -104242038 + FLAM_C SINE Alu 1 141 -2 285 29 0 0 chr11 44541959 44541993 -104241479 + (TG)n Simple_repeat Simple_repeat 1 34 0 1158 204 17 0 chr11 44542776 44543011 -104240461 - L1PB4 LINE L1 -5 6151 5913 4288 181 12 4 chr11 44543116 44544055 -104239417 - L1P LINE L1 -736 5420 4474 1051 286 123 45 chr11 44544083 44545068 -104238404 + HAL1 LINE L1 833 1894 -613 504 274 46 66 chr11 44545118 44545139 -104238333 - MER63A DNA MER1_type -1478 210 190 1285 228 10 63 chr11 44545139 44545534 -104237938 + MLT1A2 LTR MaLR 1 374 0 504 274 46 66 chr11 44545534 44545709 -104237763 - MER63A DNA MER1_type -1498 190 18 347 299 20 10 chr11 44545739 44545943 -104237529 + HAL1 LINE L1 1974 2179 -328 324 281 20 59 chr11 44546092 44546170 -104237302 + L1ME LINE L1 85 156 -6267 2201 111 0 3 chr11 44546170 44546468 -104237004 - AluSg1 SINE Alu -12 297 1 324 281 20 59 chr11 44546468 44546542 -104236930 + L1ME LINE L1 156 231 -6192 941 286 53 53 chr11 44546593 44547394 -104236078 + L1ME LINE L1 1769 2751 -4371 1864 249 53 42 chr11 44547407 44548401 -104235071 + L1ME LINE L1 5171 6294 -667 195 114 0 0 chr11 44548983 44549018 -104234454 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3166 172 13 7 chr11 44550362 44550908 -104232564 + MER44D DNA MER2_type 2 605 0 507 269 80 55 chr11 44551102 44551377 -104232095 - L2 LINE L2 -737 2577 2296 439 185 240 27 chr11 44551500 44551646 -104231826 - MER5A DNA MER1_type 0 189 13 277 287 11 0 chr11 44551663 44551750 -104231722 - L2 LINE L2 -1186 2128 2041 301 315 79 15 chr11 44551756 44551959 -104231513 - L1M4 LINE L1 -2275 3871 3656 39 0 0 0 chr11 44551961 44552000 -104231472 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr11 44552369 44552391 -104231081 + AT_rich Low_complexity Low_complexity 1 22 0 2036 101 37 14 chr11 44552722 44553018 -104230454 - AluSp SINE Alu -10 303 1 905 163 64 35 chr11 44553349 44553552 -104229920 + MER3 DNA MER1_type 1 209 0 21 0 0 0 chr11 44553574 44553595 -104229877 + AT_rich Low_complexity Low_complexity 1 21 0 1460 243 40 27 chr11 44553616 44554061 -104229411 - MLT1C LTR MaLR 0 467 17 926 339 28 18 chr11 44554558 44555015 -104228457 + LTR16B LTR ERVL 3 464 0 952 124 37 19 chr11 44555267 44555428 -104228044 - AluY SINE Alu 0 311 148 889 48 79 8 chr11 44555557 44555683 -104227789 + MER85 DNA T2_type 1 135 -4 247 310 70 39 chr11 44556288 44556546 -104226926 - HAL1 LINE L1 -871 1636 1371 2395 128 8 16 chr11 44557416 44557791 -104225681 + THE1C LTR MaLR 4 375 0 345 319 44 0 chr11 44557879 44558014 -104225458 - MER20B DNA MER1_type -619 164 24 316 317 89 22 chr11 44558570 44558750 -104224722 - MLT1I LTR MaLR -127 282 91 330 122 0 0 chr11 44558754 44558803 -104224669 - MADE1 DNA Mariner 0 80 32 258 59 0 0 chr11 44558814 44558848 -104224624 + MADE1 DNA Mariner 28 61 -19 2101 122 3 0 chr11 44559001 44559297 -104224175 + AluSp SINE Alu 1 297 -16 1837 202 57 25 chr11 44559964 44560400 -104223072 - MLT1C LTR MaLR -17 450 1 1099 141 66 0 chr11 44560597 44560810 -104222662 + L1MA6 LINE L1 6074 6300 0 312 320 57 39 chr11 44560842 44561173 -104222299 - L1MC/D LINE L1 -289 5832 5491 1167 235 54 25 chr11 44561197 44561550 -104221922 + MLT1A1 LTR MaLR 1 363 -2 1340 219 79 31 chr11 44561739 44562183 -104221289 - MLT1C LTR MaLR -2 465 1 365 221 7 143 chr11 44562800 44562940 -104220532 - L2 LINE L2 -1 3312 3192 181 340 52 31 chr11 44563455 44563552 -104219920 + L2 LINE L2 3197 3295 -18 4409 161 42 16 chr11 44563553 44564358 -104219114 - LTR1B LTR ERV1 0 826 1 824 253 99 37 chr11 44564484 44564887 -104218585 + MSTC LTR MaLR 1 428 0 2158 228 75 35 chr11 44565195 44565431 -104218041 + MLT1E LTR MaLR 1 226 -367 3965 167 83 14 chr11 44565431 44566204 -104217268 - LTR1B LTR ERV1 0 826 1 2158 228 75 35 chr11 44566204 44566537 -104216935 + MLT1E LTR MaLR 226 593 0 314 281 66 16 chr11 44566537 44566657 -104216815 + MER117 DNA MER1_type 23 148 -49 392 335 12 6 chr11 44566905 44567078 -104216394 - Charlie8 DNA MER1_type -2148 269 96 1961 142 0 36 chr11 44567104 44567413 -104216059 - AluSx SINE Alu -14 298 1 244 266 150 44 chr11 44568509 44568622 -104214850 + MIR SINE MIR 36 160 -102 334 309 130 12 chr11 44570366 44570528 -104212944 - MIR SINE MIR 0 262 82 429 236 67 84 chr11 44570875 44571053 -104212419 - MLT1J LTR MaLR -200 311 137 32154 81 6 12 chr11 44571355 44575425 -104208047 + L1PA6 LINE L1 1 4091 -2378 369 0 0 0 chr11 44575425 44575466 -104208006 + (TA)n Simple_repeat Simple_repeat 2 42 0 32154 81 6 12 chr11 44575466 44576485 -104206987 + L1PA6 LINE L1 4091 5114 -1355 2272 87 3 0 chr11 44576485 44576773 -104206699 + AluY SINE Alu 1 289 -22 32154 81 6 12 chr11 44576773 44577116 -104206356 + L1PA6 LINE L1 5114 6469 0 562 181 1 43 chr11 44577303 44577435 -104206037 - MLT1C LTR MaLR -6 461 245 219 189 0 0 chr11 44579252 44579305 -104204167 + (TA)n Simple_repeat Simple_repeat 1 53 0 219 393 8 0 chr11 44579662 44579784 -104203688 - L2 LINE L2 -263 3009 2887 499 330 18 13 chr11 44580819 44581046 -104202426 - L1MC/D LINE L1 -2064 5744 5517 241 45 23 23 chr11 44581828 44581872 -104201600 + (TTG)n Simple_repeat Simple_repeat 3 46 0 206 342 184 26 chr11 44581878 44582030 -104201442 + MER5A DNA MER1_type 12 187 -2 * 397 305 0 0 chr11 44581936 44582031 -104201441 - MER5A DNA MER1_type -79 110 16 299 104 0 0 chr11 44582324 44582372 -104201100 + MADE1 DNA Mariner 1 48 -32 * 1060 177 125 117 chr11 44582368 44582675 -104200797 - MLT1B LTR MaLR -36 354 41 2157 99 0 0 chr11 44582675 44582988 -104200484 - AluSx SINE Alu 0 313 1 1060 177 125 117 chr11 44582988 44583030 -104200442 - MLT1B LTR MaLR -349 41 1 259 240 79 26 chr11 44583444 44583612 -104199860 - LTR41 LTR ERVL -8 787 608 1274 56 0 0 chr11 44583846 44584006 -104199466 + L1PA5 LINE L1 5989 6148 -6 229 123 18 18 chr11 44584015 44584072 -104199400 + A-rich Low_complexity Low_complexity 4 60 0 649 189 95 6 chr11 44584097 44584266 -104199206 - MER53 DNA DNA -3 186 3 441 222 70 70 chr11 44584269 44584440 -104199032 - LTR41 LTR ERVL -596 177 7 562 288 42 45 chr11 44584513 44584828 -104198644 + MLT1I LTR MaLR 68 360 -49 921 254 38 0 chr11 44585131 44585340 -104198132 - MER58A DNA MER1_type -6 218 2 372 310 32 19 chr11 44585355 44585513 -104197959 + L2 LINE L2 2645 2804 -510 2681 135 47 11 chr11 44586043 44586510 -104196962 + LTR19A LTR ERV1 3 486 0 817 286 70 72 chr11 44586552 44587021 -104196451 + L2 LINE L2 2846 3313 0 209 309 0 0 chr11 44587979 44588034 -104195438 + L2 LINE L2 3213 3267 -5 1255 221 130 27 chr11 44588075 44588217 -104195255 - MLT1A1 LTR MaLR 0 365 239 2171 127 0 0 chr11 44588217 44588516 -104194956 - AluSg SINE Alu -11 299 1 1255 221 130 27 chr11 44588516 44588704 -104194768 - MLT1A1 LTR MaLR -126 239 1 23 0 0 0 chr11 44589871 44589894 -104193578 + AT_rich Low_complexity Low_complexity 1 23 0 305 29 0 0 chr11 44590079 44590114 -104193358 + (A)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr11 44590171 44590193 -104193279 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 44590573 44590594 -104192878 + AT_rich Low_complexity Low_complexity 1 21 0 847 216 89 108 chr11 44590844 44591214 -104192258 + MLT1A1 LTR MaLR 3 365 0 183 268 21 62 chr11 44591388 44591485 -104191987 - L2 LINE L2 -77 3236 3144 192 326 132 39 chr11 44591565 44591694 -104191778 - L2 LINE L2 0 3313 3173 277 241 53 145 chr11 44592014 44592242 -104191230 - MLT1L LTR MaLR -221 394 188 215 328 0 0 chr11 44592602 44592660 -104190812 - L2 LINE L2 -10 3262 3205 2151 136 3 69 chr11 44592828 44593218 -104190254 + THE1B LTR MaLR 1 364 0 302 313 80 35 chr11 44593410 44593611 -104189861 + L3 LINE CR1 195 404 -1173 1683 154 193 14 chr11 44594394 44594757 -104188715 + MSTA LTR MaLR 1 428 0 5401 107 36 26 chr11 44594827 44595939 -104187533 + pTR5 LTR ERV1 743 2025 -413 361 253 10 0 chr11 44595939 44596038 -104187434 + LTR30 LTR ERV1 544 643 -79 1646 81 5 5 chr11 44596040 44596261 -104187211 + pTR5 LTR ERV1 172 392 -2046 184 313 38 12 chr11 44596425 44596505 -104186967 + MIR SINE MIR 74 155 -107 2002 132 24 29 chr11 44596612 44596953 -104186519 - THE1C LTR MaLR -36 339 1 9428 136 48 7 chr11 44596953 44598470 -104185002 - THE1C-int LTR MaLR 0 1580 1 1935 152 29 35 chr11 44598470 44598845 -104184627 - THE1C LTR MaLR 0 375 3 469 244 11 0 chr11 44599021 44599111 -104184361 - MER5A DNA MER1_type -88 101 11 26 50 0 0 chr11 44600249 44600289 -104183183 + AT_rich Low_complexity Low_complexity 1 40 0 2772 234 30 32 chr11 44600529 44601066 -104182406 - L1MD1 LINE L1 0 6242 5706 2088 108 16 13 chr11 44601066 44601373 -104182099 + AluSx SINE Alu 1 308 -4 2772 234 30 32 chr11 44601373 44601611 -104181861 - L1MD1 LINE L1 -536 5706 5469 270 208 4 43 chr11 44601652 44601747 -104181725 - AluSp SINE Alu -123 180 135 805 195 13 58 chr11 44601747 44601973 -104181499 - L1MD1 LINE L1 -773 5469 5254 183 42 0 0 chr11 44601981 44602005 -104181467 + (TTG)n Simple_repeat Simple_repeat 2 25 0 814 134 8 0 chr11 44602005 44602124 -104181348 - AluJb SINE Alu -192 120 1 3683 265 60 51 chr11 44602125 44602228 -104181244 - L1MD1 LINE L1 -886 5260 5159 2059 120 7 3 chr11 44602228 44602527 -104180945 - AluSq SINE Alu -13 300 1 3683 265 60 51 chr11 44602527 44602686 -104180786 - L1MD1 LINE L1 -987 5159 5003 279 0 0 0 chr11 44602686 44602717 -104180755 + (TG)n Simple_repeat Simple_repeat 2 32 0 3683 265 60 51 chr11 44602717 44604306 -104179166 - L1MD1 LINE L1 -1143 5003 3392 670 242 36 52 chr11 44604384 44604431 -104179041 + L1ME2 LINE L1 5912 5958 -206 2347 75 23 3 chr11 44604431 44604736 -104178736 + AluY SINE Alu 1 311 0 670 242 36 52 chr11 44604736 44604936 -104178536 + L1ME2 LINE L1 5958 6155 -9 2031 220 7 36 chr11 44604997 44605546 -104177926 - L1MA7 LINE L1 0 6291 5759 9326 230 14 4 chr11 44605631 44608654 -104174818 - L1PA15 LINE L1 -6 6810 3728 2204 130 40 11 chr11 44608660 44609014 -104174458 - THE1B LTR MaLR 0 364 1 10158 119 16 27 chr11 44609014 44610612 -104172860 - THE1B-int LTR MaLR 0 1580 1 2190 135 30 28 chr11 44610612 44610703 -104172769 - THE1B LTR MaLR 0 364 275 3608 142 91 12 chr11 44610703 44611342 -104172130 + LTR8 LTR ERV1 1 689 -2 2190 135 30 28 chr11 44611342 44611613 -104171859 - THE1B LTR MaLR -89 275 1 472 211 0 0 chr11 44611617 44611712 -104171760 - L1 LINE L1 -3075 3071 2977 4524 234 22 21 chr11 44611816 44613886 -104169586 - L1PA15 LINE L1 -3454 3343 1255 5571 187 49 55 chr11 44614092 44616030 -104167442 - L1MA7 LINE L1 -514 5777 3857 22 0 0 0 chr11 44616117 44616139 -104167333 + AT_rich Low_complexity Low_complexity 1 22 0 3652 96 7 36 chr11 44616141 44616716 -104166756 - L1PB1 LINE L1 -4 6147 5590 1233 167 3 2 chr11 44616716 44616941 -104166531 - L1M1 LINE L1 -470 5681 5456 345 47 0 0 chr11 44616967 44617010 -104166462 + (TG)n Simple_repeat Simple_repeat 2 44 0 29397 125 15 60 chr11 44617045 44623478 -104159994 - L1PA7 LINE L1 -15 6139 9 1411 105 14 0 chr11 44623482 44623701 -104159771 - L1P5 LINE L1 -664 5487 5266 * 4410 217 8 11 chr11 44623696 44624792 -104158680 + L1P5 LINE L1 4163 5255 -891 3771 238 55 47 chr11 44624784 44624880 -104158592 - L1MDa LINE L1 -2906 3634 3540 * 1625 198 14 3 chr11 44624880 44625234 -104158238 - L1MB3 LINE L1 -3 6180 5823 3771 238 55 47 chr11 44625234 44626935 -104156537 - L1MDa LINE L1 -3000 3540 1815 1121 59 29 6 chr11 44626935 44627105 -104156367 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 3771 238 55 47 chr11 44627105 44627664 -104155808 - L1MDa LINE L1 -4725 1815 1262 773 227 26 18 chr11 44627706 44627935 -104155537 + LTR55 LTR ERV 1 231 -317 1245 291 135 28 chr11 44627935 44628616 -104154856 - L1MDa LINE L1 -5568 972 123 268 256 51 13 chr11 44629288 44629366 -104154106 + L2 LINE L2 3233 3313 0 22 0 0 0 chr11 44629367 44629389 -104154083 + AT_rich Low_complexity Low_complexity 1 22 0 223 281 50 58 chr11 44630935 44631056 -104152416 + L2 LINE L2 3186 3305 -8 931 129 0 0 chr11 44631545 44631669 -104151803 - AluSq/x SINE Alu -188 125 2 192 40 0 0 chr11 44631670 44631695 -104151777 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 299 333 133 0 chr11 44631695 44631800 -104151672 - L2 LINE L2 -5 3267 3149 1970 116 10 10 chr11 44632353 44632656 -104150816 - AluSx SINE Alu -9 303 1 488 219 148 31 chr11 44634247 44634503 -104148969 - L1ME4a LINE L1 -20 6101 5816 25 75 0 0 chr11 44634598 44634651 -104148821 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr11 44634800 44634821 -104148651 + AT_rich Low_complexity Low_complexity 1 21 0 2269 70 0 11 chr11 44636152 44636518 -104146954 - AluY SINE Alu 0 363 1 800 270 87 19 chr11 44636756 44637067 -104146405 - L1ME3A LINE L1 -1 6169 5838 890 133 76 44 chr11 44637379 44637537 -104145935 - AluSg/x SINE Alu -13 299 137 742 178 101 53 chr11 44638116 44638285 -104145187 + MER45A DNA AcHobo 1 177 -1 307 256 22 0 chr11 44639705 44639795 -104143677 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 5207 241 40 41 chr11 44640046 44642069 -104141403 + L1M1 LINE L1 13 2734 -4831 2598 188 40 41 chr11 44643291 44644116 -104139356 - MER54A LTR ERVL 0 644 1 311 347 81 22 chr11 44644294 44644516 -104138956 + MIR SINE MIR 2 236 -26 195 42 0 0 chr11 44644531 44644555 -104138917 + (TTA)n Simple_repeat Simple_repeat 2 25 0 384 270 16 17 chr11 44645693 44645830 -104137642 - L1MD3 LINE L1 0 7808 7680 827 243 49 5 chr11 44645833 44646018 -104137454 + MER89 LTR ERV1 160 352 -207 986 192 5 15 chr11 44646075 44646278 -104137194 + MER89 LTR ERV1 359 559 0 189 107 0 0 chr11 44646351 44646379 -104137093 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 632 322 105 53 chr11 44646516 44646986 -104136486 + L2 LINE L2 2119 2563 -751 1495 229 27 56 chr11 44646986 44647467 -104136005 - MLT1C LTR MaLR 0 467 1 1547 232 0 3 chr11 44647474 44647771 -104135701 + AluJb SINE Alu 1 296 -16 632 322 105 53 chr11 44647771 44647957 -104135515 + L2 LINE L2 2568 2818 -496 1035 100 0 0 chr11 44648017 44648167 -104135305 + (TA)n Simple_repeat Simple_repeat 1 150 0 207 160 40 0 chr11 44648186 44648236 -104135236 + (TA)n Simple_repeat Simple_repeat 1 52 0 336 48 0 0 chr11 44648327 44648369 -104135103 + (TG)n Simple_repeat Simple_repeat 2 43 0 391 278 21 56 chr11 44648471 44648615 -104134857 + L2 LINE L2 3134 3272 0 465 284 55 0 chr11 44648715 44648842 -104134630 - MER5C DNA MER1_type -190 134 1 24 32 0 0 chr11 44648921 44648952 -104134520 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr11 44649519 44649556 -104133916 + AT_rich Low_complexity Low_complexity 1 37 0 368 141 61 0 chr11 44649562 44649725 -104133747 + (TA)n Simple_repeat Simple_repeat 1 173 0 206 145 81 0 chr11 44649740 44649864 -104133608 + (TA)n Simple_repeat Simple_repeat 2 135 0 21 0 0 0 chr11 44649865 44649886 -104133586 + AT_rich Low_complexity Low_complexity 1 21 0 294 180 55 16 chr11 44649902 44650030 -104133442 + (TATAA)n Simple_repeat Simple_repeat 4 136 0 346 122 74 0 chr11 44650030 44650178 -104133294 + (TA)n Simple_repeat Simple_repeat 1 159 0 1348 337 75 20 chr11 44650652 44651261 -104132211 + MER115 DNA AcHobo 42 684 -9 1265 300 57 19 chr11 44651269 44651353 -104132119 - LTR33 LTR ERVL -27 494 415 2207 78 0 11 chr11 44651353 44651697 -104131775 + AluY SINE Alu 1 341 0 1265 300 57 19 chr11 44651697 44652084 -104131388 - LTR33 LTR ERVL -106 415 3 307 351 96 14 chr11 44652089 44652297 -104131175 + MIR SINE MIR 34 258 -4 303 246 9 79 chr11 44652369 44652483 -104130989 - L2 LINE L2 0 3313 3208 180 373 0 0 chr11 44652598 44652649 -104130823 + MIR SINE MIR 29 79 -183 26 0 0 0 chr11 44652649 44652675 -104130797 + AT_rich Low_complexity Low_complexity 1 26 0 763 296 106 57 chr11 44652695 44653241 -104130231 - MLT1G1 LTR MaLR -32 558 8 202 222 22 0 chr11 44653242 44653287 -104130185 + MIR SINE MIR 101 146 -116 400 283 7 65 chr11 44653936 44654074 -104129398 - MLT1J2 LTR MaLR -284 166 37 1712 134 0 8 chr11 44654711 44654958 -104128514 + AluSx SINE Alu 1 245 -67 940 158 0 33 chr11 44655060 44655243 -104128229 + AluSg/x SINE Alu 134 310 0 290 278 0 52 chr11 44655276 44655373 -104128099 + MIR SINE MIR 17 108 -154 938 98 0 0 chr11 44655373 44655505 -104127967 - AluY SINE Alu -3 308 177 2159 116 26 0 chr11 44656453 44656755 -104126717 + AluSx SINE Alu 1 310 -2 2190 127 0 10 chr11 44657263 44657577 -104125895 + AluSx SINE Alu 1 311 -1 774 161 18 24 chr11 44657577 44657745 -104125727 - L1MB8 LINE L1 -11 6167 6001 1576 108 9 0 chr11 44658257 44658471 -104125001 + AluSq SINE Alu 84 299 -14 1500 167 10 66 chr11 44659672 44659860 -104123612 - AluJo SINE Alu -18 294 128 2009 139 3 0 chr11 44659860 44660148 -104123324 + AluSx SINE Alu 1 289 -23 1500 167 10 66 chr11 44660148 44660264 -104123208 - AluJo SINE Alu -184 128 7 5852 28 0 0 chr11 44660483 44661168 -104122304 + L1PA4 LINE L1 5471 6155 0 966 319 133 36 chr11 44661461 44662046 -104121426 - MER115 DNA AcHobo 0 693 41 2245 80 0 27 chr11 44662046 44662347 -104121125 + AluY SINE Alu 3 295 -16 966 319 133 36 chr11 44662347 44662391 -104121081 - MER115 DNA AcHobo -652 41 3 260 322 43 26 chr11 44662647 44662762 -104120710 - MIR SINE MIR -126 136 20 249 314 29 51 chr11 44663599 44663736 -104119736 - MIR SINE MIR -109 153 20 1053 286 99 24 chr11 44664522 44665213 -104118259 - MER97c DNA MER1_type? -4 1086 344 886 266 150 33 chr11 44665213 44665665 -104117807 - MLT1D LTR MaLR 0 505 1 * 1150 261 11 39 chr11 44665665 44666027 -104117445 - MER97c DNA MER1_type? -738 352 1 32 0 0 0 chr11 44667240 44667272 -104116200 + AT_rich Low_complexity Low_complexity 1 32 0 4223 8 0 0 chr11 44667272 44667747 -104115725 - L1PA2 LINE L1 0 6155 5681 3592 11 0 0 chr11 44667747 44668370 -104115102 + L1PA2 LINE L1 5042 5664 -491 2001 124 30 0 chr11 44668392 44668691 -104114781 + AluSp SINE Alu 1 308 -5 322 279 0 146 chr11 44669022 44669180 -104114292 + L2 LINE L2 3137 3271 -1 433 169 12 0 chr11 44669338 44669421 -104114051 + AluJ/FLAM SINE Alu 1 84 -228 21 57 0 0 chr11 44669726 44669761 -104113711 + AT_rich Low_complexity Low_complexity 1 35 0 1699 184 18 0 chr11 44670557 44670835 -104112637 - AluSx SINE Alu -27 285 3 665 308 68 38 chr11 44670997 44671393 -104112079 - MLT1I LTR MaLR -1 408 1 1808 195 60 152 chr11 44671871 44672404 -104111068 - LTR8A LTR ERV1 0 727 291 2500 131 0 8 chr11 44672404 44672771 -104110701 - THE1B LTR MaLR 0 364 1 1808 195 60 152 chr11 44672771 44673038 -104110434 - LTR8A LTR ERV1 -436 291 1 1666 230 50 38 chr11 44673603 44674046 -104109426 + MER77 LTR ERV1 54 501 -104 373 154 161 31 chr11 44674513 44674643 -104108829 - MER3 DNA MER1_type 0 2615 2469 332 250 0 0 chr11 44674641 44674713 -104108759 - MER3 DNA MER1_type -92 117 46 * 206 391 46 0 chr11 44674837 44674924 -104108548 + MIR SINE MIR 54 144 -118 2040 127 3 3 chr11 44674930 44675256 -104108216 + AluSq SINE Alu 1 326 0 500 310 131 64 chr11 44675288 44675775 -104107697 - LTR33 LTR ERVL -1 520 1 345 281 0 31 chr11 44675775 44675871 -104107601 + MIR SINE MIR 170 262 0 397 381 13 0 chr11 44676446 44676601 -104106871 + LTR33 LTR ERVL 44 200 -321 1399 200 22 55 chr11 44677488 44677888 -104105584 - MER67C LTR ERV1 0 514 154 1565 89 25 0 chr11 44677892 44678095 -104105377 - AluSc SINE Alu -20 289 82 491 115 0 0 chr11 44678181 44678259 -104105213 - MER67D LTR ERV1 -359 155 78 334 193 20 34 chr11 44678302 44678393 -104105079 - MER67D LTR ERV1 -298 338 2 211 200 0 0 chr11 44678574 44678614 -104104858 + (TG)n Simple_repeat Simple_repeat 1 40 0 1347 218 49 68 chr11 44679735 44680208 -104103264 + MLT1C LTR MaLR 4 467 0 371 269 32 75 chr11 44680342 44680528 -104102944 + MIR SINE MIR 35 212 -50 203 296 0 74 chr11 44681021 44681102 -104102370 - L2 LINE L2 -89 3224 3150 222 307 11 23 chr11 44681172 44681260 -104102212 + CT-rich Low_complexity Low_complexity 2 88 0 2132 107 3 17 chr11 44681333 44681633 -104101839 - AluSc SINE Alu -4 305 10 231 304 0 0 chr11 44681638 44681694 -104101778 + (TG)n Simple_repeat Simple_repeat 1 56 0 21 71 0 0 chr11 44681902 44681944 -104101528 + AT_rich Low_complexity Low_complexity 1 42 0 813 172 18 0 chr11 44682822 44683169 -104100303 + (CATA)n Simple_repeat Simple_repeat 1 353 0 304 71 0 0 chr11 44683216 44683258 -104100214 - MADE1 DNA Mariner -3 77 36 * 1035 233 8 16 chr11 44683257 44683510 -104099962 + MER4D LTR ERV1 653 903 0 1620 169 12 68 chr11 44683755 44684080 -104099392 + AluJo SINE Alu 3 309 -3 2141 127 7 0 chr11 44684296 44684595 -104098877 + AluSg1 SINE Alu 1 301 -8 258 170 0 0 chr11 44684824 44684871 -104098601 + MLT1G1 LTR MaLR 8 54 -541 2022 224 30 0 chr11 44684933 44685361 -104098111 - LTR53 LTR ERVL -38 481 41 1928 213 96 87 chr11 44685398 44686178 -104097294 - MER21B LTR ERV1 -60 803 17 257 257 95 34 chr11 44686275 44686423 -104097049 + MLT1G1 LTR MaLR 149 305 -290 3632 154 80 39 chr11 44686950 44686991 -104096481 - MER4D LTR ERV1 -5 898 860 2058 121 24 0 chr11 44686991 44687281 -104096191 + AluSc SINE Alu 1 297 -12 3632 154 80 39 chr11 44687281 44688010 -104095462 - MER4D LTR ERV1 -43 860 96 1835 214 109 55 chr11 44688010 44688185 -104095287 - MER50 LTR ERV1 0 734 570 2510 81 3 0 chr11 44688185 44688493 -104094979 + AluSp SINE Alu 1 309 -4 1835 214 109 55 chr11 44688493 44689005 -104094467 - MER50 LTR ERV1 -164 570 10 402 75 11 129 chr11 44689011 44689031 -104094441 - MER4B LTR ERV1 -510 100 79 3076 121 35 66 chr11 44689031 44689650 -104093822 + MER4A LTR ERV1 1 600 0 402 75 11 129 chr11 44689650 44689722 -104093750 - MER4B LTR ERV1 -531 79 19 244 62 21 21 chr11 44689737 44689785 -104093687 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 521 86 0 181 chr11 44690052 44690097 -104093375 - MER72 LTR ERV1 0 722 709 2244 114 0 0 chr11 44690097 44690396 -104093076 - AluSg SINE Alu -1 309 11 521 86 0 181 chr11 44690396 44690466 -104093006 - MER72 LTR ERV1 -13 709 628 1715 195 41 52 chr11 44690476 44691028 -104092444 + MLT2A2 LTR ERVL 1 554 0 1206 185 45 6 chr11 44691028 44691428 -104092044 - MER72 LTR ERV1 -267 455 9 956 153 12 12 chr11 44693381 44693551 -104089921 + THE1A LTR MaLR 1 170 -194 6970 58 8 7 chr11 44693569 44694925 -104088547 - L1PA6 LINE L1 -2 7590 6229 223 170 0 0 chr11 44694925 44694972 -104088500 + (TA)n Simple_repeat Simple_repeat 1 47 0 26136 90 17 5 chr11 44694972 44698905 -104084567 - L1PA6 LINE L1 -1349 6235 1445 6681 114 161 74 chr11 44698908 44700431 -104083041 - pTR5 LTR ERV1 0 2438 784 3744 201 26 3 chr11 44700431 44701248 -104082224 - L1P3 LINE L1 -5315 1146 326 1014 157 26 11 chr11 44701258 44701449 -104082023 + THE1A LTR MaLR 158 351 -4 2272 172 19 47 chr11 44701591 44701769 -104081703 - L1MA5 LINE L1 -2 6298 6116 2155 110 14 0 chr11 44701769 44702060 -104081412 + AluSq SINE Alu 1 295 -18 2272 172 19 47 chr11 44702060 44702410 -104081062 - L1MA5 LINE L1 -184 6116 5785 1530 113 30 79 chr11 44702410 44702773 -104080699 - MER4A LTR ERV1 0 664 261 519 154 0 11 chr11 44702774 44702865 -104080607 - MER4A LTR ERV1 -572 92 3 2975 174 34 9 chr11 44702867 44703929 -104079543 - L1MA5 LINE L1 -515 5788 4711 746 265 24 0 chr11 44705421 44705587 -104077885 + MER5A DNA MER1_type 14 183 -6 311 333 130 0 chr11 44705611 44705749 -104077723 + MIR SINE MIR 40 195 -67 270 369 95 12 chr11 44706765 44706933 -104076539 + MIR3 SINE MIR 18 199 -9 200 289 0 56 chr11 44707421 44707511 -104075961 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 * 203 274 20 20 chr11 44707489 44707635 -104075837 + (TA)n Simple_repeat Simple_repeat 2 147 0 310 270 21 8 chr11 44707660 44707847 -104075625 - L1ME LINE L1 -289 5881 5692 619 126 92 0 chr11 44707956 44708075 -104075397 + AluSg/x SINE Alu 176 305 -7 309 205 24 126 chr11 44708085 44708212 -104075260 - L1ME LINE L1 -2323 5485 5372 923 236 72 58 chr11 44708216 44708236 -104075236 + MLT1A1 LTR MaLR 1 19 -346 2769 143 9 2 chr11 44708236 44708661 -104074811 - MSTA LTR MaLR 0 428 1 923 236 72 58 chr11 44708661 44709000 -104074472 + MLT1A1 LTR MaLR 19 365 0 28 0 0 0 chr11 44709062 44709090 -104074382 + AT_rich Low_complexity Low_complexity 1 28 0 1824 143 138 29 chr11 44709174 44709558 -104073914 - MSTA LTR MaLR -2 426 1 9087 151 9 42 chr11 44709558 44711189 -104072283 - MSTA-int LTR MaLR 0 1580 3 1854 147 105 11 chr11 44711207 44711589 -104071883 - MSTA LTR MaLR -10 418 1 342 125 0 62 chr11 44711590 44711654 -104071818 + Tigger7 DNA MER2_type 2502 2561 -26 3640 242 50 53 chr11 44711679 44712929 -104070543 + L1MB2 LINE L1 2680 3924 -2222 24249 43 1 0 chr11 44712929 44716735 -104066737 + L1PA4 LINE L1 2339 6154 -1 3640 242 50 53 chr11 44716735 44717227 -104066245 + L1MB2 LINE L1 3924 4416 -1730 735 253 14 43 chr11 44717229 44717506 -104065966 + L1MB7 LINE L1 5916 6184 0 * 3468 212 49 27 chr11 44717503 44719237 -104064235 + L1MB2 LINE L1 4398 6159 -12 23 0 0 0 chr11 44719252 44719275 -104064197 + AT_rich Low_complexity Low_complexity 1 23 0 259 263 76 10 chr11 44719280 44719478 -104063994 - MER114 LTR ERV -228 420 210 2164 121 13 0 chr11 44719524 44719831 -104063641 - AluSp SINE Alu -2 311 1 2045 123 11 0 chr11 44720149 44720434 -104063038 + AluSp SINE Alu 4 291 -22 29 47 0 0 chr11 44720635 44720678 -104062794 + AT_rich Low_complexity Low_complexity 1 43 0 2497 79 38 0 chr11 44720678 44721018 -104062454 - L1PB1 LINE L1 -1 6150 5798 11400 227 14 30 chr11 44721018 44724613 -104058859 - L1 LINE L1 -891 5255 1719 2114 119 10 29 chr11 44724613 44724924 -104058548 + AluSp SINE Alu 1 305 -8 11400 227 14 30 chr11 44724924 44725096 -104058376 - L1 LINE L1 -4427 1719 1546 1902 86 26 91 chr11 44725094 44725330 -104058142 - L1PBa LINE L1 -4782 2081 1884 * 2203 117 0 22 chr11 44725330 44725646 -104057826 - AluSc SINE Alu 0 309 1 1902 86 26 91 chr11 44725646 44725837 -104057635 - L1PBa LINE L1 -4979 1884 1682 457 82 38 55 chr11 44726020 44726203 -104057269 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 * 580 118 31 31 chr11 44726169 44726495 -104056977 + G-rich Low_complexity Low_complexity 1 326 0 3675 137 218 12 chr11 44726503 44727270 -104056202 - L1PBa LINE L1 -5303 1560 636 975 188 5 0 chr11 44727272 44727464 -104056008 - L1PBa LINE L1 -6663 200 8 24 0 0 0 chr11 44728402 44728426 -104055046 + AT_rich Low_complexity Low_complexity 1 24 0 1217 216 67 12 chr11 44728527 44728550 -104054922 - MLT1D LTR MaLR -1 625 605 7433 34 0 0 chr11 44728550 44729911 -104053561 - L1PA4 LINE L1 -2 6153 4787 1217 216 67 12 chr11 44729911 44730213 -104053259 - MLT1D LTR MaLR -21 605 172 258 372 53 0 chr11 44730528 44730641 -104052831 - L2 LINE L2 0 3272 3154 281 221 53 0 chr11 44730655 44730768 -104052704 + (TA)n Simple_repeat Simple_repeat 1 119 0 239 229 83 64 chr11 44730798 44730907 -104052565 + MLT1D LTR MaLR 1 111 -394 314 281 0 0 chr11 44731282 44731364 -104052108 - MER103 DNA DNA -38 128 47 2052 137 0 7 chr11 44731531 44731823 -104051649 + AluSx SINE Alu 1 290 -22 36 0 0 0 chr11 44731823 44731859 -104051613 + AT_rich Low_complexity Low_complexity 1 36 0 648 310 128 17 chr11 44731986 44732439 -104051033 + MLT1G1 LTR MaLR 38 595 0 343 172 40 81 chr11 44733102 44733201 -104050271 + MLT1K LTR MaLR 492 586 -2 1553 351 53 20 chr11 44734189 44734950 -104048522 - L2 LINE L2 -419 2895 2110 294 309 98 8 chr11 44734968 44735091 -104048381 - L2 LINE L2 -1461 1853 1720 2092 285 78 35 chr11 44735172 44736501 -104046971 + L1MEc LINE L1 169 1554 -4842 2128 149 67 63 chr11 44736509 44736939 -104046533 - MSTB1 LTR MaLR 0 432 1 2366 218 45 6 chr11 44736944 44737471 -104046001 - MSTB1-int LTR MaLR -5 1646 1099 792 258 97 30 chr11 44737479 44737941 -104045531 + L1MEc LINE L1 1991 2483 -3913 191 349 0 0 chr11 44738808 44738874 -104044598 - MIR SINE MIR -148 114 49 * 309 296 7 92 chr11 44738873 44739015 -104044457 - L2 LINE L2 0 3313 3184 942 177 14 36 chr11 44739113 44739182 -104044290 - L1 LINE L1 -1517 4629 4560 2042 182 35 33 chr11 44739182 44739611 -104043861 - MSTB1 LTR MaLR -2 430 1 942 177 14 36 chr11 44739611 44739761 -104043711 - L1 LINE L1 -1586 4560 4415 * 3594 204 37 35 chr11 44739756 44741227 -104042245 + L1MA9 LINE L1 4640 6116 -196 435 184 41 0 chr11 44741241 44741339 -104042133 - L1MA9 LINE L1 -49 6263 6162 228 54 27 0 chr11 44741330 44741367 -104042105 + L1MA9 LINE L1 6269 6306 -6 * 746 153 0 8 chr11 44741398 44741529 -104041943 + LTR28 LTR ERV1 1 130 -890 2104 133 0 3 chr11 44741529 44741822 -104041650 + AluSx SINE Alu 1 292 -20 415 233 109 13 chr11 44741921 44742155 -104041317 + MER61D LTR ERV1 275 1229 -24 3885 86 0 4 chr11 44742340 44742853 -104040619 - MER9 LTR ERVK 0 511 1 2046 137 0 27 chr11 44743379 44743679 -104039793 + AluSq SINE Alu 1 292 -21 262 308 19 10 chr11 44743865 44743969 -104039503 - MIR SINE MIR -11 251 147 1845 159 114 5 chr11 44744052 44744447 -104039025 - LTR47A LTR ERVL -14 438 1 321 338 91 7 chr11 44744647 44744801 -104038671 + MIR SINE MIR 49 215 -47 978 252 157 22 chr11 44744893 44745468 -104038004 + L1ME2 LINE L1 5497 6330 -4 782 246 45 94 chr11 44745469 44745985 -104037487 + L1ME3A LINE L1 4503 4980 -1166 2372 119 0 0 chr11 44745985 44746295 -104037177 + AluSq SINE Alu 3 312 -1 782 246 45 94 chr11 44746295 44746448 -104037024 + L1ME3A LINE L1 4980 5139 -1007 4498 50 24 15 chr11 44746500 44747532 -104035940 - MER11A LTR ERVK 0 1266 1 1559 269 112 13 chr11 44747551 44748322 -104035150 + L1ME3A LINE L1 5215 6056 -114 392 243 10 0 chr11 44748447 44748550 -104034922 + L1ME3A LINE L1 6067 6170 0 544 170 35 23 chr11 44749436 44749607 -104033865 + CT-rich Low_complexity Low_complexity 3 175 0 239 293 281 0 chr11 44750003 44750085 -104033387 + MER5A DNA MER1_type 67 171 -18 4180 128 34 52 chr11 44750086 44750512 -104032960 + MER4E LTR ERV1 3 435 -344 2204 70 0 0 chr11 44750512 44750798 -104032674 + L1PA5 LINE L1 5869 6154 0 216 0 0 0 chr11 44750803 44750827 -104032645 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 4180 128 34 52 chr11 44750827 44751185 -104032287 + MER4E LTR ERV1 439 779 0 2010 87 8 4 chr11 44751248 44751513 -104031959 - AluY SINE Alu -14 297 32 2393 124 63 14 chr11 44751673 44752099 -104031373 + MER4C LTR ERV1 1 447 -18 330 234 19 39 chr11 44752449 44752603 -104030869 + MER53 DNA DNA 23 173 -16 763 176 15 73 chr11 44752612 44752816 -104030656 - L1MC3 LINE L1 -8 7777 7586 207 0 0 0 chr11 44752833 44752856 -104030616 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 919 62 0 0 chr11 44752870 44752983 -104030489 - AluY SINE Alu -24 287 175 2153 126 0 0 chr11 44752985 44753279 -104030193 - AluSg SINE Alu -16 294 1 1414 203 3 7 chr11 44753287 44753592 -104029880 - L1MC3 LINE L1 -204 7581 7278 187 377 38 0 chr11 44754553 44754659 -104028813 - L2 LINE L2 -8 3305 3196 2321 102 0 0 chr11 44754791 44755096 -104028376 + AluSg SINE Alu 1 305 -5 188 403 42 51 chr11 44755136 44755352 -104028120 - L2 LINE L2 -342 2972 2759 404 365 101 50 chr11 44755744 44756180 -104027292 + L2 LINE L2 2853 3310 -3 21 0 0 0 chr11 44756542 44756563 -104026909 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr11 44756746 44756773 -104026699 + AT_rich Low_complexity Low_complexity 1 27 0 2850 204 62 30 chr11 44757063 44757810 -104025662 + MER21B LTR ERV1 39 809 -54 463 266 16 23 chr11 44758089 44758217 -104025255 - L2 LINE L2 -2 3311 3185 868 315 9 6 chr11 44758257 44758590 -104024882 + L1MEc LINE L1 34 367 -6029 5564 125 189 89 chr11 44759728 44761269 -104022203 - pTR5 LTR ERV1 0 2438 743 1646 186 99 49 chr11 44761326 44761705 -104021767 + LTR49-int LTR ERV1 844 1203 -3677 346 206 44 0 chr11 44761705 44761773 -104021699 + tRNA-Glu-GAG tRNA tRNA 2 72 -3 1646 186 99 49 chr11 44761773 44761924 -104021548 + LTR49-int LTR ERV1 1203 1613 -3267 2933 187 39 48 chr11 44762067 44762815 -104020657 + LTR49-int LTR ERV1 1372 2112 -4219 3702 147 59 80 chr11 44762818 44763620 -104019852 + LTR1 LTR ERV1 1 785 0 14683 178 44 11 chr11 44763620 44766553 -104016919 + HUERS-P2 LTR ERV1 1 3088 0 988 179 0 0 chr11 44766559 44766738 -104016734 - HUERS-P2 LTR ERV1 -1170 1918 1740 2477 178 41 114 chr11 44766750 44767397 -104016075 + HUERS-P2 LTR ERV1 3354 4047 -2284 1577 189 36 26 chr11 44767397 44767703 -104015769 - AluJb SINE Alu -3 309 1 2477 178 41 114 chr11 44767703 44767907 -104015565 + HUERS-P2 LTR ERV1 4047 4122 -2209 1630 166 3 53 chr11 44767907 44768209 -104015263 - AluJo SINE Alu -14 298 12 2477 178 41 114 chr11 44768209 44768364 -104015108 + HUERS-P2 LTR ERV1 4122 4287 -2044 790 212 98 52 chr11 44768471 44769058 -104014414 + LTR48 LTR ERV1 1 644 0 464 146 61 0 chr11 44769060 44769142 -104014330 + LTR48-int LTR ERV1 1 87 -6244 585 174 0 58 chr11 44769817 44769938 -104013534 - FLAM_C SINE Alu -18 125 12 299 91 18 18 chr11 44769946 44770001 -104013471 + LTR49-int LTR ERV1 4149 4203 -2128 21 0 0 0 chr11 44770969 44770990 -104012482 + AT_rich Low_complexity Low_complexity 1 21 0 2244 126 0 0 chr11 44771119 44771429 -104012043 + AluSx SINE Alu 1 310 -2 381 266 28 52 chr11 44771462 44771751 -104011721 + L1M4 LINE L1 4735 5016 -1130 788 265 49 16 chr11 44771760 44772130 -104011342 + L1MEc LINE L1 796 1177 -5219 689 246 101 30 chr11 44772209 44772477 -104010995 - L2 LINE L2 -2367 947 661 207 325 37 55 chr11 44772415 44772521 -104010951 - MIR SINE MIR -86 122 20 * 284 207 0 24 chr11 44773141 44773223 -104010249 - L1MD2 LINE L1 -1 6358 6279 1123 67 11 22 chr11 44773223 44773402 -104010070 + AluYb8 SINE Alu 1 177 -141 1449 111 19 37 chr11 44774372 44774696 -104008776 + AluYb8 SINE Alu 1 318 0 3054 208 19 12 chr11 44774696 44775416 -104008056 - L1MD2 LINE L1 -72 6287 5563 783 294 189 21 chr11 44775475 44775894 -104007578 - L2 LINE L2 0 3313 2825 234 373 68 17 chr11 44776266 44776384 -104007088 + MIR SINE MIR 26 149 -113 449 147 21 21 chr11 44777063 44777158 -104006314 - AluSg/x SINE Alu -4 305 211 1526 197 7 7 chr11 44777818 44778102 -104005370 + AluSx SINE Alu 13 296 -16 1758 124 79 14 chr11 44778208 44778499 -104004973 + AluSg SINE Alu 1 310 0 236 30 90 30 chr11 44778776 44778843 -104004629 + (TATAA)n Simple_repeat Simple_repeat 3 73 0 2331 104 0 13 chr11 44778901 44779217 -104004255 - AluSx SINE Alu 0 312 1 24 91 0 0 chr11 44779397 44779463 -104004009 + AT_rich Low_complexity Low_complexity 1 66 0 2241 101 3 13 chr11 44779585 44779901 -104003571 + AluSq SINE Alu 1 313 0 217 264 83 41 chr11 44781052 44781173 -104002299 - MIR SINE MIR -37 225 100 566 286 59 20 chr11 44781303 44781506 -104001966 + MIR SINE MIR 52 262 0 991 156 6 0 chr11 44781668 44781828 -104001644 - MLT2B1 LTR ERVL -359 161 1 1962 196 16 0 chr11 44781866 44782233 -104001239 + MLT1B LTR MaLR 18 390 0 388 248 17 0 chr11 44782252 44782369 -104001103 - Charlie8 DNA MER1_type -2254 163 45 27 0 0 0 chr11 44783221 44783248 -104000224 + AT_rich Low_complexity Low_complexity 1 27 0 2050 191 64 12 chr11 44783276 44783699 -103999773 - MER65A LTR ERV1 0 445 1 2147 258 75 17 chr11 44783699 44784798 -103998674 - MER65A-int LTR ERV1 0 4871 3605 1888 226 126 42 chr11 44784810 44784837 -103998635 - MER65-int LTR ERV1 -939 5392 5369 1922 126 7 0 chr11 44784837 44785170 -103998302 + AluSc SINE Alu 1 335 0 1888 226 126 42 chr11 44785170 44786095 -103997377 - MER65-int LTR ERV1 -962 5369 4282 558 183 107 139 chr11 44786082 44786420 -103997052 - MER65-int LTR ERV1 -1913 4418 2729 * 1588 198 7 0 chr11 44786422 44786725 -103996747 + L1PB3 LINE L1 5847 6151 -3 1102 161 33 59 chr11 44786813 44787118 -103996354 - MER65-int LTR ERV1 -2572 4026 3730 852 180 10 40 chr11 44787197 44787397 -103996075 - MER65-int LTR ERV1 -2868 3730 3537 5914 187 69 90 chr11 44787480 44790380 -103993092 - MER65-int LTR ERV1 -2377 2494 417 2136 181 37 18 chr11 44790742 44791179 -103992293 - MER65A LTR ERV1 0 445 1 409 250 57 40 chr11 44791179 44791348 -103992124 + MER112 DNA MER1_type 74 248 -12 207 313 50 0 chr11 44791465 44791545 -103991927 - L2 LINE L2 -2454 860 777 239 254 0 17 chr11 44791709 44791768 -103991704 - L2 LINE L2 0 3313 3256 3397 330 142 25 chr11 44791894 44792011 -103991461 - L2 LINE L2 -103 3210 3108 2754 94 0 0 chr11 44792011 44792374 -103991098 + THE1B LTR MaLR 1 363 -1 3397 330 142 25 chr11 44792374 44794753 -103988719 - L2 LINE L2 -205 3108 425 270 153 0 0 chr11 44794756 44794815 -103988657 + (CAT)n Simple_repeat Simple_repeat 1 59 0 241 421 50 34 chr11 44796185 44796482 -103986990 - L2 LINE L2 -7 3265 2964 188 280 80 70 chr11 44797555 44797655 -103985817 - L2 LINE L2 -3 3269 3169 2216 96 0 7 chr11 44797809 44798142 -103985330 + AluY SINE Alu 1 311 0 206 379 42 21 chr11 44798142 44798237 -103985235 - L2 LINE L2 -223 3049 2953 241 337 35 100 chr11 44798535 44799024 -103984448 - L2 LINE L2 -687 2627 2171 1496 240 30 30 chr11 44799181 44799571 -103983901 - MLT1C LTR MaLR 0 467 78 1341 204 112 161 chr11 44799571 44800497 -103982975 - LTR1B LTR ERV1 0 1020 1 269 213 107 0 chr11 44800497 44800564 -103982908 - MLT1C LTR MaLR -385 82 8 325 368 8 0 chr11 44801043 44801160 -103982312 + MIR SINE MIR 66 183 -79 671 224 0 0 chr11 44801195 44801320 -103982152 + FLAM_A SINE Alu 1 125 -8 305 246 180 30 chr11 44802661 44802828 -103980644 - MLT1K LTR MaLR -33 555 364 207 224 0 41 chr11 44803177 44803226 -103980246 + CT-rich Low_complexity Low_complexity 3 49 0 29 0 0 0 chr11 44803268 44803297 -103980175 + AT_rich Low_complexity Low_complexity 1 29 0 459 349 50 9 chr11 44803956 44804174 -103979298 - MIR SINE MIR -34 228 2 247 278 86 18 chr11 44805389 44805502 -103977970 + MIR SINE MIR 73 191 -61 505 351 24 5 chr11 44805511 44805716 -103977756 - MIR SINE MIR 0 262 54 324 103 0 69 chr11 44805771 44805829 -103977643 + MADE1 DNA Mariner 14 67 -13 2035 126 0 7 chr11 44806271 44806565 -103976907 - AluSc SINE Alu -15 294 3 22 35 0 0 chr11 44807644 44807673 -103975799 + AT_rich Low_complexity Low_complexity 1 29 0 290 242 42 11 chr11 44807857 44807952 -103975520 + MER5C DNA MER1_type 57 154 -170 328 224 224 0 chr11 44808026 44808160 -103975312 + MER5C DNA MER1_type 161 324 0 220 39 0 0 chr11 44808293 44808319 -103975153 + (TG)n Simple_repeat Simple_repeat 1 26 0 383 118 0 15 chr11 44808319 44808387 -103975085 + (TA)n Simple_repeat Simple_repeat 2 68 0 373 228 331 0 chr11 44808477 44808604 -103974868 + MER5A DNA MER1_type 13 181 -8 363 284 0 11 chr11 44809351 44809446 -103974026 + MIR SINE MIR 31 124 -138 282 95 0 0 chr11 44809590 44809632 -103973840 + (TG)n Simple_repeat Simple_repeat 1 42 0 210 91 0 0 chr11 44809731 44809764 -103973708 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 880 223 31 31 chr11 44810922 44811146 -103972326 - MER58A DNA MER1_type 0 224 1 235 167 0 0 chr11 44811148 44811184 -103972288 + MIR SINE MIR 216 251 -11 2481 63 0 0 chr11 44811481 44811782 -103971690 + AluY SINE Alu 1 301 -10 3806 186 33 1 chr11 44811922 44812701 -103970771 - L1 LINE L1 -983 5163 4360 2743 162 88 15 chr11 44812710 44813301 -103970171 + L1MA8 LINE L1 5656 6289 -2 305 344 65 30 chr11 44813325 44813555 -103969917 + L1M4c LINE L1 1471 1708 -4834 234 284 23 11 chr11 44813570 44813658 -103969814 + L1M4c LINE L1 1838 1926 -4614 24 32 0 0 chr11 44813880 44813911 -103969561 + AT_rich Low_complexity Low_complexity 1 31 0 345 179 126 11 chr11 44813991 44814086 -103969386 + L1M4c LINE L1 2444 2549 -3991 32 26 0 0 chr11 44814096 44814135 -103969337 + AT_rich Low_complexity Low_complexity 1 39 0 389 301 153 38 chr11 44814593 44814958 -103968514 + L1M4c LINE L1 3167 3573 -2967 2252 162 2 31 chr11 44815220 44815847 -103967625 + L1PA16 LINE L1 5007 5606 -560 1876 223 166 47 chr11 44815862 44816643 -103966829 + LTR28 LTR ERV1 8 972 -48 543 257 13 20 chr11 44816644 44816796 -103966676 + LTR28 LTR ERV1 869 1019 -1 3134 164 9 4 chr11 44816796 44817345 -103966127 + L1PA16 LINE L1 5610 6161 -5 361 373 28 0 chr11 44817417 44817594 -103965878 + L1M4c LINE L1 3921 4102 -2438 2172 115 13 0 chr11 44817633 44817938 -103965534 - AluSc SINE Alu 0 309 1 351 0 0 0 chr11 44818007 44818046 -103965426 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 263 86 41 chr11 44818077 44818415 -103965057 + L1M4c LINE L1 4244 4596 -1944 300 258 33 132 chr11 44818580 44818762 -103964710 + L1ME2 LINE L1 28 191 -5879 407 311 67 37 chr11 44818909 44819302 -103964170 + L1ME2 LINE L1 408 808 -5275 2254 249 158 16 chr11 44819429 44820006 -103963466 + L1ME2 LINE L1 3596 4090 -1990 342 0 0 0 chr11 44820006 44820044 -103963428 + (CA)n Simple_repeat Simple_repeat 1 38 0 2254 249 158 16 chr11 44820044 44820274 -103963198 + L1ME2 LINE L1 4090 4286 -1794 2209 59 3 21 chr11 44820274 44820613 -103962859 + AluY SINE Alu 1 334 0 2254 249 158 16 chr11 44820613 44820881 -103962591 + L1ME2 LINE L1 4286 4826 -1254 189 171 0 0 chr11 44821379 44821414 -103962058 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 195 100 0 0 chr11 44821414 44821444 -103962028 + (CA)n Simple_repeat Simple_repeat 2 31 0 731 237 117 59 chr11 44821536 44821894 -103961578 + L1ME2 LINE L1 5711 6089 -9 282 194 0 0 chr11 44821964 44822026 -103961446 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5144 140 24 43 chr11 44822027 44822628 -103960844 + MER49 LTR ERV1 1 579 -344 1699 180 52 17 chr11 44822628 44822990 -103960482 + THE1C LTR MaLR 1 375 0 5144 140 24 43 chr11 44822990 44823326 -103960146 + MER49 LTR ERV1 579 920 -3 1480 199 4 4 chr11 44823326 44823607 -103959865 - AluJb SINE Alu -6 306 26 252 0 0 0 chr11 44823803 44823831 -103959641 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 194 65 48 chr11 44824768 44824830 -103958642 - L2 LINE L2 0 3272 3210 311 237 32 11 chr11 44825643 44825736 -103957736 + CT-rich Low_complexity Low_complexity 1 95 0 555 78 0 0 chr11 44826284 44826361 -103957111 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 555 78 0 0 chr11 44827064 44827141 -103956331 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 281 329 57 32 chr11 44828309 44828467 -103955005 + MIR SINE MIR 26 187 -75 26 30 0 0 chr11 44830352 44830385 -103953087 + AT_rich Low_complexity Low_complexity 1 33 0 2036 183 30 30 chr11 44830913 44831345 -103952127 + MSTB1 LTR MaLR 1 432 0 1502 181 78 43 chr11 44831976 44832347 -103951125 - MLT1B LTR MaLR 0 390 7 283 249 69 110 chr11 44834751 44834924 -103948548 + MIR SINE MIR 50 215 -47 625 282 111 14 chr11 44834949 44835165 -103948307 + MIR SINE MIR 12 248 -14 569 268 29 14 chr11 44835178 44835316 -103948156 - MIR SINE MIR -110 152 13 203 337 223 0 chr11 44835469 44835635 -103947837 - MIR SINE MIR -58 204 2 1949 161 62 39 chr11 44835857 44836292 -103947180 + MER65A LTR ERV1 1 445 0 465 291 8 106 chr11 44836572 44836826 -103946646 + MLT1K LTR MaLR 19 247 -341 277 310 21 42 chr11 44836964 44837106 -103946366 + MLT1K LTR MaLR 448 586 -2 185 132 26 0 chr11 44837819 44837857 -103945615 + (TG)n Simple_repeat Simple_repeat 2 40 0 236 167 0 19 chr11 44837861 44837915 -103945557 + (TA)n Simple_repeat Simple_repeat 1 53 0 321 82 0 0 chr11 44837964 44838013 -103945459 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 364 339 23 0 chr11 44838476 44838606 -103944866 + MIR SINE MIR 20 152 -110 621 326 11 41 chr11 44839375 44839642 -103943830 - MIR SINE MIR 0 262 4 21 36 0 0 chr11 44839880 44839908 -103943564 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 44839972 44839993 -103943479 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 44840483 44840504 -103942968 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 825 101 8 0 chr11 44840910 44841039 -103942433 - Alu SINE Alu -6 304 175 223 286 135 95 chr11 44841779 44842031 -103941441 + MIR SINE MIR 1 262 0 504 250 101 0 chr11 44842647 44842795 -103940677 + MIR SINE MIR 38 200 -62 24 0 0 0 chr11 44843038 44843062 -103940410 + AT_rich Low_complexity Low_complexity 1 24 0 2229 93 10 0 chr11 44843810 44844111 -103939361 - AluY SINE Alu 0 311 8 196 295 42 74 chr11 44844231 44844326 -103939146 + L2 LINE L2 3137 3228 -44 192 355 0 16 chr11 44844649 44844711 -103938761 + MIR SINE MIR 20 80 -182 227 263 123 35 chr11 44845228 44845342 -103938130 - MLT1H LTR MaLR -424 125 2 316 279 114 77 chr11 44845818 44846115 -103937357 - MLT1H LTR MaLR -222 327 20 23 68 0 0 chr11 44846139 44846183 -103937289 + AT_rich Low_complexity Low_complexity 1 44 0 212 216 20 0 chr11 44847653 44847704 -103935768 + (TAA)n Simple_repeat Simple_repeat 1 52 0 319 301 121 54 chr11 44847720 44847959 -103935513 - MIR SINE MIR 0 262 8 22 70 0 0 chr11 44848110 44848153 -103935319 + AT_rich Low_complexity Low_complexity 1 43 0 283 298 138 70 chr11 44848354 44848783 -103934689 + L2 LINE L2 2855 3312 -1 368 326 122 0 chr11 44849072 44849244 -103934228 + LTR16C LTR ERVL 299 491 0 427 329 6 12 chr11 44849272 44849439 -103934033 + GA-rich Low_complexity Low_complexity 2 167 0 220 231 15 30 chr11 44849463 44849597 -103933875 + GA-rich Low_complexity Low_complexity 1 132 0 224 345 95 0 chr11 44850401 44850485 -103932987 + MIR SINE MIR 30 121 -87 183 42 0 0 chr11 44850552 44850576 -103932896 + (GGAGAA)n Simple_repeat Simple_repeat 5 28 0 33 43 0 0 chr11 44850657 44850704 -103932768 + AT_rich Low_complexity Low_complexity 1 47 0 298 306 166 6 chr11 44851838 44851995 -103931477 + MIR SINE MIR 53 234 -28 22 35 0 0 chr11 44852133 44852162 -103931310 + AT_rich Low_complexity Low_complexity 1 29 0 196 313 163 0 chr11 44852273 44852353 -103931119 - L2 LINE L2 -37 3276 3184 22 0 0 0 chr11 44852671 44852693 -103930779 + AT_rich Low_complexity Low_complexity 1 22 0 1007 354 15 21 chr11 44854028 44854556 -103928916 - ERVL LTR ERVL -1383 4271 3747 1107 196 30 113 chr11 44854600 44854998 -103928474 + MLT1A1 LTR MaLR 1 365 0 3460 223 3 0 chr11 44854999 44855682 -103927790 + MLT1A1-int LTR MaLR 2 686 -1049 315 320 49 8 chr11 44855693 44855815 -103927657 - ERVL LTR ERVL -1963 3033 2907 1054 343 51 28 chr11 44855857 44856674 -103926798 - ERVL LTR ERVL -2640 2845 2050 2387 57 0 0 chr11 44856834 44857138 -103926334 - AluY SINE Alu 0 304 1 1041 337 31 36 chr11 44857192 44857744 -103925728 - ERVL LTR ERVL -3974 1022 474 6723 111 11 5 chr11 44857941 44858972 -103924500 + L1MA2 LINE L1 5262 6298 -6 316 344 80 6 chr11 44859533 44859696 -103923776 - LTR16A LTR ERVL -154 296 122 256 394 48 12 chr11 44860348 44860513 -103922959 + MIR SINE MIR 50 220 -42 193 237 68 102 chr11 44860672 44860790 -103922682 + L2 LINE L2 3185 3298 -15 6609 32 0 0 chr11 44861797 44862623 -103920849 + L1PA3 LINE L1 5357 6182 0 193 258 16 141 chr11 44862826 44862954 -103920518 + MIR3 SINE MIR 4 115 -93 231 286 0 11 chr11 44863303 44863394 -103920078 - L1MC4 LINE L1 -1339 6703 6614 215 258 15 15 chr11 44863394 44863460 -103920012 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 276 30 0 0 chr11 44864167 44864200 -103919272 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 319 83 33 0 chr11 44864199 44864259 -103919213 + (TA)n Simple_repeat Simple_repeat 1 62 0 465 295 27 58 chr11 44864395 44864653 -103918819 + MIR SINE MIR 3 252 -10 277 330 0 0 chr11 44864979 44865070 -103918402 + (CATA)n Simple_repeat Simple_repeat 2 92 0 21 0 0 0 chr11 44865238 44865259 -103918213 + AT_rich Low_complexity Low_complexity 1 21 0 1867 128 31 3 chr11 44865308 44865598 -103917874 - AluSx SINE Alu -14 298 1 201 152 0 0 chr11 44866188 44866221 -103917251 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2722 302 101 25 chr11 44867020 44868271 -103915201 + L2 LINE L2 650 2005 -1309 354 23 0 0 chr11 44868271 44868314 -103915158 + (TG)n Simple_repeat Simple_repeat 2 44 0 2722 302 101 25 chr11 44868314 44868367 -103915105 + L2 LINE L2 2005 2053 -1261 314 298 39 0 chr11 44868430 44868534 -103914938 + L2 LINE L2 2218 2325 -989 284 200 12 0 chr11 44868608 44868688 -103914784 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 234 238 0 48 chr11 44868792 44868855 -103914617 - MLT1I LTR MaLR -58 351 292 323 194 14 0 chr11 44868901 44868973 -103914499 - MLT1D LTR MaLR 0 505 433 980 171 78 57 chr11 44868973 44869218 -103914254 + MER92B LTR ERV1 1 250 -386 712 191 6 87 chr11 44869217 44869400 -103914072 - MLT1E2 LTR MaLR -446 180 13 * 230 57 29 0 chr11 44869489 44869524 -103913948 + MLT1I LTR MaLR 98 133 -276 1421 252 33 14 chr11 44869768 44870129 -103913343 + MLT1F LTR MaLR 6 373 -169 270 177 0 81 chr11 44873300 44873362 -103910110 - L2 LINE L2 -5 3267 3211 303 278 107 83 chr11 44873464 44873716 -103909756 - MIR SINE MIR -4 258 1 642 334 73 16 chr11 44874213 44874581 -103908891 + MLT1I LTR MaLR 13 401 -8 236 157 39 0 chr11 44876054 44876105 -103907367 + CT-rich Low_complexity Low_complexity 3 55 0 189 344 115 21 chr11 44876510 44876606 -103906866 + MIR SINE MIR 35 139 -123 2030 199 122 0 chr11 44876714 44877140 -103906332 + MER66A LTR ERV1 1 478 0 6237 199 72 27 chr11 44877162 44879166 -103904306 + MER66A-int LTR ERV1 13 2167 -4509 * 13330 184 37 39 chr11 44879163 44880192 -103903280 + MER66A-int LTR ERV1 2338 3368 -3308 2131 108 4 0 chr11 44880192 44880471 -103903001 + AluSp SINE Alu 1 280 -33 291 28 0 0 chr11 44880471 44880507 -103902965 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 13330 184 37 39 chr11 44880507 44883284 -103900188 + MER66A-int LTR ERV1 3366 6238 -438 289 345 78 3 chr11 44883497 44883781 -103899691 - HAL1 LINE L1 -839 1668 1364 233 258 11 0 chr11 44883922 44884015 -103899457 + (TA)n Simple_repeat Simple_repeat 2 95 0 465 327 35 18 chr11 44884019 44884245 -103899227 - L1MEd LINE L1 -4971 1148 919 4851 195 28 18 chr11 44884254 44885509 -103897963 - L1MC1 LINE L1 -1 6612 5346 2807 267 56 13 chr11 44885511 44886787 -103896685 - L1MC1 LINE L1 -2433 3993 2664 24484 149 7 11 chr11 44886806 44893255 -103890217 - L1PA8 LINE L1 -17 6470 1 8449 181 103 57 chr11 44893272 44895802 -103887670 - L1MC1 LINE L1 -3915 2692 6 1366 197 17 0 chr11 44895793 44896092 -103887380 - L1MC3 LINE L1 -16 7769 7466 * 556 238 24 18 chr11 44896109 44896273 -103887199 - L1PB4 LINE L1 -22 6134 5970 905 161 0 0 chr11 44896373 44896528 -103886944 - L1PA15 LINE L1 -208 5957 5803 188 294 160 34 chr11 44897380 44897499 -103885973 - MIR SINE MIR -116 146 13 234 341 11 0 chr11 44897711 44897799 -103885673 - L2 LINE L2 0 3313 3225 537 269 35 56 chr11 44899208 44899405 -103884067 + MER20 DNA MER1_type 3 195 -24 2010 141 0 0 chr11 44899415 44899705 -103883767 + AluY SINE Alu 7 296 -15 2747 141 43 25 chr11 44899847 44899908 -103883564 + L1MA8 LINE L1 5722 5780 -511 342 67 0 0 chr11 44899908 44899953 -103883519 + (CA)n Simple_repeat Simple_repeat 2 46 0 2747 141 43 25 chr11 44899953 44900444 -103883028 + L1MA8 LINE L1 5780 6284 -7 180 111 0 0 chr11 44900444 44900471 -103883001 + (CATA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 44900475 44900498 -103882974 + AT_rich Low_complexity Low_complexity 1 23 0 183 389 83 0 chr11 44900867 44900975 -103882497 - L2 LINE L2 0 3272 3156 1314 235 40 75 chr11 44901066 44901589 -103881883 + MLT1D LTR MaLR 1 505 0 574 337 114 45 chr11 44901675 44902272 -103881200 - L2 LINE L2 -217 3055 2422 2343 96 3 7 chr11 44903331 44903634 -103879838 - AluSp SINE Alu -11 302 1 385 240 94 0 chr11 44903782 44903878 -103879594 + MIR SINE MIR 71 175 -87 2009 120 24 10 chr11 44904120 44904412 -103879060 - AluSq SINE Alu -17 296 1 830 276 5 0 chr11 44904818 44905028 -103878444 - MER58A DNA MER1_type -13 211 1 180 284 8 119 chr11 44905276 44905410 -103878062 - MER5C DNA MER1_type -159 165 47 1395 227 25 44 chr11 44907174 44907579 -103875893 + MLT2C1 LTR ERVL 1 397 0 510 297 79 0 chr11 44908332 44908497 -103874975 - MER115 DNA AcHobo -314 379 202 222 205 0 0 chr11 44909000 44909039 -103874433 + GA-rich Low_complexity Low_complexity 3 41 0 584 185 53 13 chr11 44909800 44909951 -103873521 - L1MA10 LINE L1 -2 6332 6176 244 283 42 42 chr11 44910171 44910337 -103873135 - MER41B LTR ERV1 -210 425 260 3307 172 65 3 chr11 44910538 44911225 -103872247 - L1MB1 LINE L1 -6 6183 5454 670 273 35 46 chr11 44911279 44911539 -103871933 - MIR SINE MIR 0 262 6 316 252 118 34 chr11 44911578 44911697 -103871775 + MIR3 SINE MIR 10 138 -70 514 252 76 0 chr11 44912269 44912400 -103871072 + MER58B DNA MER1_type 192 332 -9 304 316 77 46 chr11 44912390 44912538 -103870934 + MLT1I LTR MaLR 27 169 -240 * 2256 86 10 7 chr11 44912538 44912842 -103870630 - AluY SINE Alu -4 307 3 304 316 77 46 chr11 44912842 44913019 -103870453 + MLT1I LTR MaLR 169 362 -47 255 61 0 0 chr11 44913197 44913230 -103870242 + (TA)n Simple_repeat Simple_repeat 2 34 0 432 55 0 0 chr11 44913230 44913285 -103870187 + (TG)n Simple_repeat Simple_repeat 2 56 0 298 297 106 47 chr11 44913363 44913599 -103869873 + MIR SINE MIR 7 256 -6 213 39 0 0 chr11 44914043 44914069 -103869403 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 276 30 0 0 chr11 44914074 44914107 -103869365 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 353 35 17 chr11 44914156 44914272 -103869200 - MIR3 SINE MIR -1 207 90 182 203 0 14 chr11 44914741 44914815 -103868657 + GA-rich Low_complexity Low_complexity 2 74 0 5199 140 22 17 chr11 44915457 44917075 -103866397 + L1PA13 LINE L1 4445 6156 -7 2322 59 21 3 chr11 44917389 44917679 -103865793 + AluY SINE Alu 1 295 -16 333 277 215 36 chr11 44917983 44918178 -103865294 + MIR SINE MIR 24 253 -9 188 296 111 64 chr11 44919573 44919745 -103863727 + MIR SINE MIR 32 211 -51 * 201 318 259 0 chr11 44919724 44919913 -103863559 - MIR SINE MIR -24 238 1 203 184 0 0 chr11 44920258 44920296 -103863176 + (TA)n Simple_repeat Simple_repeat 1 38 0 504 254 104 59 chr11 44921571 44921791 -103861681 - MIR SINE MIR -10 252 23 4353 130 62 12 chr11 44921943 44922691 -103860781 - LTR1 LTR ERV1 0 785 1 230 266 32 11 chr11 44924138 44924232 -103859240 + GA-rich Low_complexity Low_complexity 1 96 0 778 240 53 65 chr11 44924328 44924747 -103858725 + MLT1D LTR MaLR 31 467 0 230 286 130 26 chr11 44924837 44924991 -103858481 - L2 LINE L2 -125 3188 3019 233 338 96 7 chr11 44925043 44925179 -103858293 - MIR SINE MIR -74 188 41 1869 130 11 0 chr11 44926151 44926421 -103857051 + AluSg SINE Alu 1 273 -37 508 289 14 0 chr11 44926458 44926600 -103856872 - MIR SINE MIR 0 262 119 497 361 18 9 chr11 44926725 44926944 -103856528 + MIR SINE MIR 37 257 -5 1948 142 7 3 chr11 44927016 44927325 -103856147 - AluSq SINE Alu -3 310 1 236 281 55 31 chr11 44927468 44927596 -103855876 + MIR SINE MIR 132 262 0 278 299 49 62 chr11 44928643 44928787 -103854685 - MIR3 SINE MIR -65 143 2 243 256 86 61 chr11 44928790 44928919 -103854553 - MIR3 SINE MIR -37 171 39 407 328 125 48 chr11 44929072 44929407 -103854065 + L3 LINE CR1 1042 1402 -175 340 304 32 8 chr11 44929469 44929594 -103853878 + MIR3 SINE MIR 67 194 -14 201 389 35 18 chr11 44929613 44929726 -103853746 + L3 LINE CR1 1450 1564 -13 334 326 36 80 chr11 44930040 44930341 -103853131 - LTR67 LTR ERVL -169 388 101 7008 273 51 36 chr11 44930422 44933959 -103849513 + L1PA12 LINE L1 11 3590 -3994 1788 214 12 48 chr11 44933966 44934531 -103848941 + L1PA12 LINE L1 4434 4978 -2606 316 225 75 0 chr11 44934558 44934638 -103848834 - L1MC4 LINE L1 -1339 6703 6618 3864 193 1 22 chr11 44934638 44935282 -103848190 + L1PA12 LINE L1 4976 5603 -1981 1840 135 52 3 chr11 44935282 44935571 -103847901 + AluSx SINE Alu 1 303 -9 3864 193 1 22 chr11 44935571 44935704 -103847768 + L1PA12 LINE L1 5603 5737 -1847 1503 165 0 7 chr11 44935750 44936023 -103847449 + L1PA15 LINE L1 5887 6157 -8 242 287 31 114 chr11 44936048 44936211 -103847261 - L2 LINE L2 -1270 2044 1908 2312 73 0 7 chr11 44936211 44936512 -103846960 - AluY SINE Alu -2 309 11 242 287 31 114 chr11 44936512 44936602 -103846870 - L2 LINE L2 -1406 1908 1812 1375 213 15 0 chr11 44937013 44937281 -103846191 - AluJo SINE Alu -9 303 32 2438 131 28 33 chr11 44937291 44937749 -103845723 - L1MA8 LINE L1 -6 6285 5830 212 300 62 25 chr11 44938173 44938253 -103845219 + L2 LINE L2 3190 3272 0 322 296 121 25 chr11 44939232 44939431 -103844041 + MIR SINE MIR 13 230 -32 218 276 17 0 chr11 44939836 44939894 -103843578 + L2 LINE L2 2584 2642 -672 306 0 0 0 chr11 44940049 44940083 -103843389 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1108 109 0 0 chr11 44940083 44940239 -103843233 - L1PA5 LINE L1 -18 6136 5981 7579 49 15 3 chr11 44940239 44941234 -103842238 + L1M LINE L1 4342 5350 -812 1440 295 37 22 chr11 44941363 44942041 -103841431 - L1ME3A LINE L1 -203 6247 5560 763 275 113 39 chr11 44942085 44942627 -103840845 - L1ME3A LINE L1 -913 5513 4932 1127 264 71 45 chr11 44942627 44943006 -103840466 - MLT1D LTR MaLR 0 505 109 2390 38 14 3 chr11 44943006 44943298 -103840174 + AluY SINE Alu 1 295 -16 1127 264 71 45 chr11 44943298 44943410 -103840062 - MLT1D LTR MaLR -396 109 1 496 137 60 6 chr11 44943546 44943714 -103839758 + (TA)n Simple_repeat Simple_repeat 1 177 0 922 295 52 24 chr11 44943785 44944465 -103839007 - L1MCa LINE L1 -4622 1985 1088 3151 248 87 43 chr11 44944473 44946370 -103837102 + L1ME1 LINE L1 3794 5769 -397 905 233 49 17 chr11 44946418 44946811 -103836661 - MER54B LTR ERVL -111 682 236 718 169 8 0 chr11 44946809 44946933 -103836539 - MER54B LTR ERVL -661 132 8 * 1240 242 21 15 chr11 44946943 44947282 -103836190 + L1ME1 LINE L1 5781 6121 -45 1709 258 98 19 chr11 44947313 44948409 -103835063 + L1ME2 LINE L1 4383 5553 -609 1094 263 80 29 chr11 44948414 44948862 -103834610 + L1ME2 LINE L1 5604 6074 -90 3255 18 0 3 chr11 44949503 44949883 -103833589 - L1PA3 LINE L1 -4 6151 5773 1642 169 0 7 chr11 44950772 44951056 -103832416 + AluSp SINE Alu 2 283 -30 328 297 0 0 chr11 44951081 44951172 -103832300 - L1MC4 LINE L1 -1339 6703 6613 222 213 0 0 chr11 44951818 44951865 -103831607 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr11 44953057 44953081 -103830391 + (TC)n Simple_repeat Simple_repeat 2 25 0 1682 260 65 28 chr11 44953267 44953836 -103829636 - MLT1E LTR MaLR -3 590 1 26 30 0 0 chr11 44953897 44953930 -103829542 + AT_rich Low_complexity Low_complexity 1 33 0 278 146 0 0 chr11 44954025 44954066 -103829406 - MER47A DNA MER2_type -1 365 325 1791 169 116 72 chr11 44954082 44954607 -103828865 + LTR10A LTR ERV1 1 548 -61 1606 144 0 0 chr11 44954615 44954858 -103828614 - MER47A DNA MER2_type -81 285 43 2097 120 3 16 chr11 44954958 44955266 -103828206 + AluSg SINE Alu 1 304 -6 22 0 0 0 chr11 44955311 44955333 -103828139 + AT_rich Low_complexity Low_complexity 1 22 0 233 226 62 85 chr11 44955536 44955713 -103827759 - L1MC4a LINE L1 -1578 6230 6058 558 231 94 68 chr11 44955761 44956068 -103827404 - L1MC4a LINE L1 -1847 5961 5647 666 309 67 14 chr11 44956222 44956445 -103827027 - LTR16A LTR ERVL -94 356 122 1090 363 41 34 chr11 44956643 44957598 -103825874 - ERVL LTR ERVL -381 5383 4422 509 307 49 53 chr11 44957876 44958120 -103825352 - MIR SINE MIR -18 244 2 185 355 60 81 chr11 44959209 44959541 -103823931 - L2 LINE L2 -42 3230 2906 1061 196 25 68 chr11 44959808 44960089 -103823383 + L1MA9 LINE L1 6008 6276 -36 239 239 84 48 chr11 44960229 44960396 -103823076 + L1ME4a LINE L1 5762 5934 -187 1880 161 0 7 chr11 44960852 44961156 -103822316 - AluSx SINE Alu -10 302 1 420 260 29 69 chr11 44961630 44961803 -103821669 - L2 LINE L2 -3 3310 3145 266 250 0 100 chr11 44961825 44961945 -103821527 + MER104 DNA Tc2 65 172 -8 270 211 118 0 chr11 44962326 44962402 -103821070 - MIR SINE MIR -54 208 124 1705 209 51 57 chr11 44963006 44963514 -103819958 + MLT1D LTR MaLR 1 505 0 647 304 42 14 chr11 44963522 44963739 -103819733 + MIR SINE MIR 36 258 -4 883 88 7 7 chr11 44963958 44964094 -103819378 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 21 0 0 0 chr11 44965891 44965912 -103817560 + AT_rich Low_complexity Low_complexity 1 21 0 193 271 200 29 chr11 44965912 44966052 -103817420 + L2 LINE L2 3150 3313 0 188 375 52 0 chr11 44966797 44966893 -103816579 + MIR SINE MIR 32 132 -130 3176 189 20 3 chr11 44966965 44967559 -103815913 + MER6A DNA MER2_type 2 605 0 314 299 119 15 chr11 44968848 44968982 -103814490 + MIR SINE MIR 3 150 -112 336 372 101 12 chr11 44969435 44969693 -103813779 - L2 LINE L2 -222 3091 2811 1540 100 134 180 chr11 44969815 44970101 -103813371 - MSTA LTR MaLR 0 428 169 1910 147 3 0 chr11 44970101 44970387 -103813085 - AluSx SINE Alu -25 287 1 1540 100 134 180 chr11 44970387 44970549 -103812923 - MSTA LTR MaLR -259 169 1 248 375 31 0 chr11 44970833 44970929 -103812543 + L2 LINE L2 3169 3267 -5 282 306 33 56 chr11 44970959 44971139 -103812333 - MIR SINE MIR -28 234 59 214 222 0 32 chr11 44972339 44972402 -103811070 + T-rich Low_complexity Low_complexity 3 63 0 414 134 0 0 chr11 44973887 44973954 -103809518 + (TA)n Simple_repeat Simple_repeat 1 67 0 301 294 32 8 chr11 44974053 44974179 -103809293 + (CATA)n Simple_repeat Simple_repeat 3 131 0 445 211 24 106 chr11 44974321 44974444 -103809028 - MLT1I LTR MaLR -15 611 278 553 254 15 0 chr11 44975149 44975283 -103808189 + MLT1J2 LTR MaLR 47 182 -268 1027 231 14 9 chr11 44975741 44975962 -103807510 + MER58A DNA MER1_type 1 222 -2 279 292 95 42 chr11 44976288 44976456 -103807016 + MIR SINE MIR 86 262 0 23 0 0 0 chr11 44976629 44976652 -103806820 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr11 44976842 44976875 -103806597 + AT_rich Low_complexity Low_complexity 1 33 0 3215 118 2 0 chr11 44976880 44977353 -103806119 - L1P LINE L1 -1131 5015 4542 26 0 0 0 chr11 44977359 44977385 -103806087 + AT_rich Low_complexity Low_complexity 1 26 0 245 180 0 16 chr11 44977437 44977498 -103805974 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr11 44978093 44978115 -103805357 + AT_rich Low_complexity Low_complexity 1 22 0 358 331 16 0 chr11 44979789 44979910 -103803562 + MLT1K LTR MaLR 160 282 -306 226 298 0 32 chr11 44980347 44980441 -103803031 + (CATA)n Simple_repeat Simple_repeat 4 94 0 267 31 0 0 chr11 44980871 44980903 -103802569 + (CA)n Simple_repeat Simple_repeat 1 32 0 1870 159 27 57 chr11 44981405 44981846 -103801626 - L1MA7 LINE L1 -2 6289 5862 184 316 84 76 chr11 44982101 44982458 -103801014 + L2 LINE L2 2211 2570 -744 2221 93 17 0 chr11 44982634 44982925 -103800547 - AluSq SINE Alu -16 297 2 188 321 24 12 chr11 44986294 44986378 -103797094 - MER5A DNA MER1_type -78 111 27 260 284 32 53 chr11 44986444 44986539 -103796933 + L2 LINE L2 3180 3272 0 1811 189 100 85 chr11 44987786 44988294 -103795178 - LTR53 LTR ERVL -3 516 1 805 262 86 0 chr11 44989476 44989697 -103793775 - L1ME1 LINE L1 -11 6155 5916 268 293 131 10 chr11 44989749 44989848 -103793624 - MER94 DNA DNA -10 124 14 315 0 0 0 chr11 44989878 44989913 -103793559 + (CA)n Simple_repeat Simple_repeat 2 36 0 245 266 29 93 chr11 44990232 44990371 -103793101 + L3 LINE CR1 1433 1562 -15 259 243 157 43 chr11 44990445 44990585 -103792887 + MIR SINE MIR 107 262 0 1102 313 41 33 chr11 44990827 44991287 -103792185 - MER115 DNA AcHobo -9 684 221 477 297 35 30 chr11 44991541 44991743 -103791729 + MLT1J2 LTR MaLR 92 294 -156 312 70 0 0 chr11 44991874 44991917 -103791555 + (TG)n Simple_repeat Simple_repeat 2 44 0 483 69 0 0 chr11 44992020 44992092 -103791380 + (TAAA)n Simple_repeat Simple_repeat 4 75 0 225 154 0 0 chr11 44992100 44992139 -103791333 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1487 212 55 23 chr11 44992623 44992916 -103790556 - MLT1A1 LTR MaLR -8 357 50 2198 128 3 0 chr11 44992916 44993221 -103790251 - AluSq SINE Alu -7 306 1 1487 212 55 23 chr11 44993221 44993272 -103790200 - MLT1A1 LTR MaLR -315 50 2 22 35 0 0 chr11 44993824 44993853 -103789619 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr11 44993892 44993915 -103789557 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr11 44994836 44994865 -103788607 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr11 44994904 44994928 -103788544 + (A)n Simple_repeat Simple_repeat 1 24 0 1190 311 38 17 chr11 44995888 44996306 -103787166 - LTR16A LTR ERVL -8 442 16 280 312 72 8 chr11 44997028 44997153 -103786319 - MIR SINE MIR -128 134 2 402 258 75 38 chr11 44997385 44997571 -103785901 - L2 LINE L2 -8 3305 3113 314 286 248 12 chr11 44997662 44997823 -103785649 + MIR SINE MIR 64 262 0 204 97 0 0 chr11 44998388 44998419 -103785053 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr11 44998746 44998771 -103784701 + (T)n Simple_repeat Simple_repeat 1 25 0 5031 157 53 2 chr11 44999034 44999926 -103783546 + L1MC1 LINE L1 232 1168 -5258 436 237 94 31 chr11 44999925 45000149 -103783323 - L1M4 LINE L1 -1662 4484 4247 * 3579 104 6 0 chr11 45000157 45000657 -103782815 - L1PA11 LINE L1 -1 6173 5671 1066 78 0 0 chr11 45000659 45000822 -103782650 + L1PA5 LINE L1 6003 6165 0 4273 182 32 22 chr11 45000823 45001573 -103781899 + L1MA7 LINE L1 1179 1920 -4651 411 56 0 0 chr11 45001573 45001627 -103781845 + (CA)n Simple_repeat Simple_repeat 1 54 0 4273 182 32 22 chr11 45001627 45002017 -103781455 + L1MA7 LINE L1 1920 6452 -119 2121 132 65 11 chr11 45002018 45002373 -103781099 - THE1C LTR MaLR -1 374 1 9888 128 22 16 chr11 45002373 45003944 -103779528 - THE1C-int LTR MaLR 0 1580 2 1311 159 5 0 chr11 45003945 45004146 -103779326 - THE1C LTR MaLR 0 375 174 1328 146 9 9 chr11 45004247 45004466 -103779006 - THE1C LTR MaLR -155 220 2 475 188 0 26 chr11 45004466 45004583 -103778889 + L1MA8 LINE L1 6167 6280 -11 999 148 132 11 chr11 45004629 45004995 -103778477 + L1MC1 LINE L1 1448 1947 -4479 5025 255 62 18 chr11 45004998 45006867 -103776605 + L1MC1 LINE L1 2726 4512 -2101 1569 97 0 23 chr11 45006867 45007084 -103776388 + AluY SINE Alu 1 212 -99 5025 255 62 18 chr11 45007084 45008844 -103774628 + L1MC1 LINE L1 4512 6613 0 1060 286 109 55 chr11 45009016 45009485 -103773987 - L2 LINE L2 0 3313 2820 324 355 60 14 chr11 45009619 45009836 -103773636 - MIR SINE MIR -30 232 6 216 0 0 0 chr11 45009959 45009983 -103773489 + (TG)n Simple_repeat Simple_repeat 2 25 0 325 279 57 95 chr11 45010030 45010292 -103773180 + MIR SINE MIR 3 254 -8 790 333 132 21 chr11 45011325 45011947 -103771525 - L2 LINE L2 -375 2939 2249 22 56 0 0 chr11 45013154 45013190 -103770282 + AT_rich Low_complexity Low_complexity 1 36 0 1532 205 23 3 chr11 45014154 45014456 -103769016 - AluJo SINE Alu -2 310 3 483 209 88 40 chr11 45014482 45014630 -103768842 - MER20 DNA MER1_type -1 218 64 337 39 39 0 chr11 45014632 45014683 -103768789 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 1777 291 130 10 chr11 45066281 45067580 -103715892 - L1MEc LINE L1 -2376 3839 2385 1409 77 0 6 chr11 45067654 45067835 -103715637 + AluY SINE Alu 1 180 -131 24 32 0 0 chr11 45067880 45067911 -103715561 + AT_rich Low_complexity Low_complexity 1 31 0 6540 108 23 24 chr11 45067911 45068157 -103715315 - L1MA1 LINE L1 0 6302 6057 2637 19 7 0 chr11 45068157 45068466 -103715006 - AluYa5 SINE Alu 0 311 1 6540 108 23 24 chr11 45068466 45069266 -103714206 - L1MA1 LINE L1 -245 6057 5257 476 244 129 4 chr11 45069266 45069491 -103713981 - L1MEc LINE L1 -4119 2277 2025 704 275 94 48 chr11 45069551 45070341 -103713131 - L1MEc LINE L1 -4463 1933 1108 22 35 0 0 chr11 45070494 45070523 -103712949 + AT_rich Low_complexity Low_complexity 1 29 0 747 198 69 230 chr11 45071217 45071276 -103712196 - MLT1E LTR MaLR -6 587 520 2148 97 7 3 chr11 45071276 45071565 -103711907 + AluSp SINE Alu 3 292 -21 747 198 69 230 chr11 45071565 45071939 -103711533 - MLT1E LTR MaLR -73 520 271 1882 138 14 34 chr11 45072042 45072391 -103711081 + L1PB4 LINE L1 5450 5791 -365 246 174 0 0 chr11 45072391 45072437 -103711035 + (CATA)n Simple_repeat Simple_repeat 3 48 0 722 305 55 9 chr11 45072520 45072864 -103710608 + L1PB4 LINE L1 5782 6141 -15 395 268 0 0 chr11 45073038 45073135 -103710337 - L1MD2 LINE L1 -477 5882 5786 835 234 45 0 chr11 45073137 45073338 -103710134 + MLT2B1 LTR ERVL 1 210 -310 712 199 9 109 chr11 45073358 45073517 -103709955 + MLT2B1 LTR ERVL 331 466 -54 180 77 0 0 chr11 45073517 45073543 -103709929 + (TG)n Simple_repeat Simple_repeat 2 27 0 712 199 9 109 chr11 45073543 45073594 -103709878 + MLT2B1 LTR ERVL 466 520 0 1804 231 9 5 chr11 45073595 45074027 -103709445 - L1MD2 LINE L1 -572 5787 5354 406 296 71 50 chr11 45074028 45074308 -103709164 + L1M4 LINE L1 3176 3461 -2685 1438 228 24 12 chr11 45074316 45074650 -103708822 + L1M4 LINE L1 5423 5760 -418 1055 238 55 97 chr11 45074648 45075228 -103708244 - L1MD2 LINE L1 -777 5369 4813 * 2023 134 13 0 chr11 45075228 45075535 -103707937 - AluY SINE Alu 0 311 1 1055 238 55 97 chr11 45075535 45075554 -103707918 - L1MD2 LINE L1 -1333 4813 4795 * 1220 271 79 24 chr11 45075538 45076591 -103706881 + L1MEc LINE L1 1826 2904 -3311 2477 65 0 3 chr11 45076591 45076900 -103706572 + AluY SINE Alu 1 308 -3 1220 271 79 24 chr11 45076900 45076954 -103706518 + L1MEc LINE L1 2904 2954 -3261 877 313 24 12 chr11 45077041 45077455 -103706017 + L1MEc LINE L1 3592 4013 -2202 7746 17 0 3 chr11 45077455 45078671 -103704801 + L1PA3 LINE L1 4939 6151 -4 1557 153 8 0 chr11 45078789 45079066 -103704406 + L1PB4 LINE L1 5897 6176 0 341 216 14 0 chr11 45080449 45080523 -103702949 - MER116 DNA Mariner -5 75 1 306 0 0 0 chr11 45080811 45080845 -103702627 + (CA)n Simple_repeat Simple_repeat 2 35 0 1388 162 18 18 chr11 45080845 45081673 -103701799 - L1MC1 LINE L1 -13 6320 5429 1162 231 85 0 chr11 45081718 45082012 -103701460 + MER5C DNA MER1_type 1 319 -5 356 217 11 0 chr11 45082070 45082162 -103701310 + (TG)n Simple_repeat Simple_repeat 2 94 0 463 163 12 0 chr11 45082173 45082259 -103701213 - L1MA9 LINE L1 -53 6259 6173 528 343 93 45 chr11 45082291 45082734 -103700738 - L2 LINE L2 -723 2591 2128 243 268 0 0 chr11 45082733 45082789 -103700683 + L2 LINE L2 3252 3307 -6 * 1428 218 11 0 chr11 45082881 45083165 -103700307 - AluJo SINE Alu -14 298 12 489 294 61 40 chr11 45083279 45083507 -103699965 - L2 LINE L2 -1318 1996 1764 197 413 31 22 chr11 45083667 45083897 -103699575 - MIR SINE MIR -10 252 19 414 0 0 0 chr11 45083898 45083944 -103699528 + (TG)n Simple_repeat Simple_repeat 1 46 0 1501 118 74 118 chr11 45083961 45084366 -103699106 - LTR7 LTR ERV1 -63 387 1 4629 61 3 8 chr11 45084366 45084977 -103698495 - HERVH LTR ERV1 0 7713 7106 989 149 6 6 chr11 45084969 45085130 -103698342 - HERVH LTR ERV1 -4061 3652 3492 * 985 120 7 0 chr11 45085120 45085270 -103698202 - HERVH LTR ERV1 -4423 3290 3140 * 6254 135 0 18 chr11 45085249 45086288 -103697184 - HERVH LTR ERV1 -4718 2995 1976 2300 91 0 3 chr11 45086406 45086726 -103696746 - L1PA10 LINE L1 -5 6163 5845 3215 103 39 0 chr11 45086728 45087321 -103696151 + L1P4 LINE L1 5141 5754 -414 1790 185 0 0 chr11 45087403 45087701 -103695771 - AluJo SINE Alu -14 298 1 27 29 0 0 chr11 45087705 45087739 -103695733 + AT_rich Low_complexity Low_complexity 1 34 0 234 297 0 0 chr11 45087739 45087813 -103695659 + L1ME3 LINE L1 6089 6162 0 286 378 16 42 chr11 45087847 45088040 -103695432 - MLT1I LTR MaLR -108 301 114 1206 178 5 0 chr11 45088545 45088742 -103694730 - MER58A DNA MER1_type -15 209 12 287 325 47 35 chr11 45088767 45088936 -103694536 - MIR3 SINE MIR -11 197 27 265 295 24 72 chr11 45089288 45089495 -103693977 - L1MEc LINE L1 -5132 1129 933 291 281 48 30 chr11 45089540 45089707 -103693765 - L1MEc LINE L1 -5186 884 715 2114 179 14 43 chr11 45090448 45090889 -103692583 + MSTA LTR MaLR 1 428 0 387 321 179 24 chr11 45091191 45091531 -103691941 - LTR16A1 LTR ERVL -10 447 55 1746 170 168 11 chr11 45093074 45093444 -103690028 - MSTA LTR MaLR 0 428 1 8827 150 13 38 chr11 45093444 45094472 -103689000 - MSTA-int LTR MaLR 0 1580 605 2092 138 0 0 chr11 45094472 45094777 -103688695 - AluSx SINE Alu -7 305 1 8827 150 13 38 chr11 45094777 45095365 -103688107 - MSTA-int LTR MaLR -975 605 4 1643 159 136 60 chr11 45095369 45095766 -103687706 - MSTA LTR MaLR -1 427 1 5919 103 12 11 chr11 45096568 45097469 -103686003 - L1PA13 LINE L1 -4 6159 5258 733 265 81 27 chr11 45097677 45097975 -103685497 + L1ME3A LINE L1 5847 6160 -10 276 374 69 38 chr11 45098641 45098772 -103684700 - L2 LINE L2 -5 3267 3133 475 284 39 65 chr11 45100781 45100936 -103682536 - LTR33 LTR ERVL -336 185 35 2402 83 0 3 chr11 45100936 45101248 -103682224 + AluY SINE Alu 1 311 0 705 237 40 0 chr11 45101590 45101742 -103681730 - FRAM SINE Alu -8 158 1 483 277 53 10 chr11 45102586 45102791 -103680681 - MLT1J2 LTR MaLR -163 283 68 210 118 0 0 chr11 45103025 45103059 -103680413 + (CA)n Simple_repeat Simple_repeat 2 35 0 1447 194 110 42 chr11 45103119 45103527 -103679945 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chr11 45103684 45103707 -103679765 + AT_rich Low_complexity Low_complexity 1 23 0 278 311 16 114 chr11 45104363 45104617 -103678855 + MLT1I LTR MaLR 59 287 -122 923 178 0 0 chr11 45105049 45105212 -103678260 + L1PB4 LINE L1 5994 6156 0 227 222 0 0 chr11 45105254 45105299 -103678173 - L1MC4 LINE L1 -1340 6702 6658 1551 101 0 5 chr11 45105300 45105508 -103677964 - AluSg/x SINE Alu -18 294 88 609 115 0 0 chr11 45105510 45105597 -103677875 + AluS SINE Alu 11 97 -216 7119 49 11 1 chr11 45106103 45107778 -103675694 + L1PA5 LINE L1 4465 6154 0 306 261 90 96 chr11 45108301 45108489 -103674983 - L1MEd LINE L1 -4885 1234 1048 1211 191 64 69 chr11 45108525 45108917 -103674555 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr11 45109516 45109537 -103673935 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 45110492 45110520 -103672952 + AT_rich Low_complexity Low_complexity 1 28 0 213 175 0 0 chr11 45110990 45111030 -103672442 + A-rich Low_complexity Low_complexity 1 40 0 1924 181 17 50 chr11 45111445 45111848 -103671624 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr11 45112128 45112152 -103671320 + AT_rich Low_complexity Low_complexity 1 24 0 497 306 41 12 chr11 45112311 45112481 -103670991 - MIR SINE MIR -82 180 6 1282 265 103 33 chr11 45112676 45113443 -103670029 + L1ME1 LINE L1 3951 4771 -1375 252 191 0 15 chr11 45113443 45113511 -103669961 + (TTAA)n Simple_repeat Simple_repeat 1 67 0 228 200 22 0 chr11 45113523 45113568 -103669904 - L1M4 LINE L1 -1381 4765 4720 8943 215 40 15 chr11 45113619 45114861 -103668611 + L1MA7 LINE L1 2238 3564 -2582 1578 179 29 4 chr11 45114861 45115159 -103668313 + AluSx SINE Alu 1 305 0 8943 215 40 15 chr11 45115159 45116187 -103667285 + L1MA7 LINE L1 3564 4565 -1581 1934 198 50 19 chr11 45116187 45116606 -103666866 + MSTB1 LTR MaLR 1 432 0 2677 219 10 3 chr11 45116610 45117195 -103666277 + MSTB1-int LTR MaLR 5 593 -1058 2797 181 66 13 chr11 45117197 45117513 -103665959 + L1MA7 LINE L1 5459 5757 -534 1636 181 3 32 chr11 45117513 45117822 -103665650 + AluJb SINE Alu 1 300 -12 2797 181 66 13 chr11 45117822 45118185 -103665287 + L1MA7 LINE L1 5757 6280 -11 2129 269 51 38 chr11 45118220 45119273 -103664199 + L1ME1 LINE L1 5040 6108 -58 230 209 27 27 chr11 45119276 45119386 -103664086 + (CATA)n Simple_repeat Simple_repeat 2 111 0 2661 288 129 44 chr11 45119428 45121273 -103662199 + L1M4 LINE L1 2217 4341 -1805 1976 133 0 20 chr11 45121273 45121566 -103661906 + AluSx SINE Alu 3 289 -23 2661 288 129 44 chr11 45121566 45122277 -103661195 + L1M4 LINE L1 4341 4990 -1156 313 301 0 19 chr11 45122746 45122849 -103660623 + GA-rich Low_complexity Low_complexity 4 104 0 26 50 0 0 chr11 45122974 45123014 -103660458 + AT_rich Low_complexity Low_complexity 1 40 0 1479 129 16 65 chr11 45123133 45123343 -103660129 - L1MA4 LINE L1 0 6300 6108 2318 57 0 17 chr11 45123343 45123643 -103659829 - AluY SINE Alu -16 295 1 1479 129 16 65 chr11 45123643 45123742 -103659730 - L1MA4 LINE L1 -192 6108 6006 225 349 0 0 chr11 45124086 45124149 -103659323 + L3 LINE CR1 1513 1575 -2 541 307 47 7 chr11 45125128 45125278 -103658194 + MIR3 SINE MIR 26 181 -27 259 306 9 18 chr11 45125937 45126048 -103657424 + LTR33 LTR ERVL 1 110 -411 255 409 0 0 chr11 45126204 45126314 -103657158 + LTR33 LTR ERVL 301 410 -111 1114 84 0 0 chr11 45126325 45126467 -103657005 - AluSp SINE Alu -19 294 153 618 322 47 44 chr11 45126607 45126924 -103656548 - MLT1K LTR MaLR -201 387 70 514 332 85 7 chr11 45127257 45127717 -103655755 + L2 LINE L2 2763 3270 -2 24 96 0 0 chr11 45127836 45127909 -103655563 + AT_rich Low_complexity Low_complexity 1 73 0 532 297 26 51 chr11 45128322 45128586 -103654886 + MIR SINE MIR 10 262 0 311 335 19 31 chr11 45128790 45128951 -103654521 + MIR SINE MIR 104 262 0 224 282 106 0 chr11 45129975 45130060 -103653412 - L2 LINE L2 -15 3298 3205 361 325 49 16 chr11 45130090 45130213 -103653259 + L2 LINE L2 3138 3264 -8 278 349 24 75 chr11 45130799 45131094 -103652378 - L2 LINE L2 0 3272 2993 505 368 81 10 chr11 45131108 45131705 -103651767 + L2 LINE L2 2615 3256 -16 1001 235 0 0 chr11 45131828 45132024 -103651448 - MLT1B LTR MaLR -8 382 187 303 253 53 0 chr11 45132027 45132102 -103651370 - MER2 DNA MER2_type 0 345 267 1034 138 122 5 chr11 45132184 45132373 -103651099 - MER2 DNA MER2_type -134 211 1 869 191 67 6 chr11 45132373 45132549 -103650923 - MLT1B LTR MaLR -201 189 3 540 296 50 86 chr11 45132716 45133192 -103650280 - MLT1J LTR MaLR -36 475 17 220 136 15 15 chr11 45133536 45133602 -103649870 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 202 367 78 0 chr11 45133692 45133782 -103649690 + MIR SINE MIR 86 182 -80 476 351 0 26 chr11 45133882 45134073 -103649399 + MIR SINE MIR 66 251 -11 666 255 62 56 chr11 45135189 45135546 -103647926 - L1MC4 LINE L1 -541 7501 7143 310 207 17 0 chr11 45137506 45137564 -103645908 - L2 LINE L2 0 3272 3214 1012 252 64 19 chr11 45137848 45138209 -103645263 - L1ME2 LINE L1 -213 5951 5575 224 312 170 0 chr11 45138224 45138365 -103645107 + MIR SINE MIR 98 262 0 23 0 0 0 chr11 45138381 45138404 -103645068 + AT_rich Low_complexity Low_complexity 1 23 0 272 254 15 15 chr11 45138518 45138585 -103644887 - MIR3 SINE MIR -34 174 108 601 343 58 0 chr11 45138625 45138832 -103644640 - MIR SINE MIR -42 220 2 348 309 64 32 chr11 45139575 45139795 -103643677 - MLT1I LTR MaLR -188 221 1 409 326 76 0 chr11 45139915 45140087 -103643385 - MIR SINE MIR -12 250 66 382 350 64 0 chr11 45140401 45140558 -103642914 - MIR SINE MIR -89 173 7 402 315 27 20 chr11 45141019 45141168 -103642304 - L2 LINE L2 -2 3311 3162 2390 77 0 0 chr11 45141217 45141517 -103641955 + AluY SINE Alu 10 309 -2 222 214 57 0 chr11 45141524 45141594 -103641878 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 302 330 35 26 chr11 45141630 45141745 -103641727 - L2 LINE L2 -240 3073 2958 594 284 214 12 chr11 45141800 45142202 -103641270 + L2 LINE L2 2209 2691 -623 360 192 13 0 chr11 45142272 45142350 -103641122 + L1MA7 LINE L1 5976 6054 -237 402 333 7 14 chr11 45142379 45142526 -103640946 + L2 LINE L2 2799 2944 -370 222 295 90 0 chr11 45142557 45142635 -103640837 + L2 LINE L2 3225 3309 -4 2055 103 0 0 chr11 45142637 45142908 -103640564 - AluSx SINE Alu -41 271 1 213 288 50 93 chr11 45143144 45143283 -103640189 + MIR3 SINE MIR 13 145 -63 182 310 42 78 chr11 45144431 45144573 -103638899 + MIR3 SINE MIR 10 146 -62 26 0 0 0 chr11 45144752 45144778 -103638694 + AT_rich Low_complexity Low_complexity 1 26 0 1999 133 14 0 chr11 45144878 45145185 -103638287 - AluSx SINE Alu 0 311 1 274 379 65 30 chr11 45145754 45145986 -103637486 + L2 LINE L2 3032 3271 -1 198 167 0 0 chr11 45146484 45146520 -103636952 + (CATA)n Simple_repeat Simple_repeat 1 36 0 257 241 0 11 chr11 45147472 45147559 -103635913 + (TA)n Simple_repeat Simple_repeat 1 86 0 1639 196 22 30 chr11 45147776 45148144 -103635328 + MLT1A1 LTR MaLR 1 365 0 866 217 24 16 chr11 45148205 45148413 -103635059 + MLT1D LTR MaLR 218 445 -60 715 260 29 6 chr11 45148481 45148654 -103634818 - MLT1D LTR MaLR -328 177 1 390 307 128 24 chr11 45148689 45148940 -103634532 - L1MC/D LINE L1 -2258 5550 5274 402 283 67 84 chr11 45148989 45149392 -103634080 - L1MC/D LINE L1 -993 5153 4758 348 308 43 54 chr11 45149529 45149805 -103633667 - L1MC/D LINE L1 -3625 2521 2249 464 266 30 18 chr11 45151194 45151363 -103632109 - LTR37B LTR ERV1 -18 450 280 3046 102 20 13 chr11 45151371 45151822 -103631650 - L1PA10 LINE L1 -31 6137 5684 4010 147 24 4 chr11 45151849 45152524 -103630948 + L1PA16 LINE L1 5476 6163 -3 683 214 14 101 chr11 45152526 45152802 -103630670 - LTR37B LTR ERV1 -216 252 1 2150 113 0 25 chr11 45153477 45153796 -103629676 - AluSq SINE Alu -2 311 1 267 281 29 101 chr11 45153799 45153938 -103629534 + MIR3 SINE MIR 47 175 -33 716 231 102 22 chr11 45153966 45154269 -103629203 - LTR16A LTR ERVL -68 382 16 1724 128 4 0 chr11 45154781 45155047 -103628425 + L1PA13 LINE L1 5897 6163 0 2374 89 0 0 chr11 45155634 45155938 -103627534 - AluY SINE Alu -7 304 1 252 331 84 16 chr11 45155985 45156169 -103627303 - MIR SINE MIR -50 212 19 374 323 101 6 chr11 45156364 45156522 -103626950 - MIR SINE MIR -58 150 20 9453 173 4 30 chr11 45157192 45159040 -103624432 + L1P LINE L1 952 2752 -3394 2075 164 90 10 chr11 45159355 45159757 -103623715 + Tigger2a DNA MER2_type 1 434 0 2356 203 31 71 chr11 45159773 45160410 -103623062 + LTR9 LTR ERV1 1 612 0 27 29 0 0 chr11 45160716 45160750 -103622722 + AT_rich Low_complexity Low_complexity 1 34 0 359 336 52 48 chr11 45160779 45161068 -103622404 - L2 LINE L2 -4 3309 3020 513 332 35 17 chr11 45161438 45161670 -103621802 + MLT2E LTR ERVL 346 581 -47 1870 156 41 3 chr11 45161675 45161990 -103621482 + L1P3 LINE L1 8 334 -6127 434 302 93 20 chr11 45162684 45163121 -103620351 + L1MEd LINE L1 1044 1508 -4621 227 194 30 30 chr11 45163205 45163272 -103620200 + MLT1J LTR MaLR 97 163 -348 521 328 28 35 chr11 45163800 45164008 -103619464 + L1MEc LINE L1 1194 1402 -4994 2434 90 0 0 chr11 45164008 45164319 -103619153 + AluY SINE Alu 1 311 0 521 328 28 35 chr11 45164319 45164711 -103618761 + L1MEc LINE L1 1402 1790 -4606 2808 113 88 4 chr11 45164834 45165301 -103618171 + LTR1 LTR ERV1 280 785 0 401 248 177 7 chr11 45165465 45165606 -103617866 - MLT1I LTR MaLR -155 254 90 282 302 9 0 chr11 45165791 45165897 -103617575 - MER103 DNA DNA 0 166 60 3052 208 15 5 chr11 45166349 45167012 -103616460 - L1MB4 LINE L1 -6 6174 5505 274 410 0 0 chr11 45167615 45167720 -103615752 + MIR SINE MIR 1 105 -157 214 170 0 64 chr11 45167734 45167781 -103615691 - L2 LINE L2 0 3272 3229 449 236 57 8 chr11 45167894 45168017 -103615455 + MIR SINE MIR 120 248 -14 327 281 5 0 chr11 45168019 45168117 -103615355 - MIR SINE MIR -74 134 34 312 111 0 0 chr11 45168150 45168204 -103615268 + (GA)n Simple_repeat Simple_repeat 1 54 0 286 333 23 0 chr11 45168648 45168777 -103614695 - MER94 DNA DNA -2 132 1 2174 107 0 10 chr11 45169549 45169849 -103613623 + AluSq SINE Alu 17 313 0 200 222 167 0 chr11 45170506 45170560 -103612912 + MIR SINE MIR 200 262 0 355 323 112 36 chr11 45170603 45170826 -103612646 + MIR SINE MIR 11 250 -12 422 240 10 10 chr11 45171266 45171370 -103612102 + LTR16C LTR ERVL 386 489 -2 2185 222 55 71 chr11 45171556 45172217 -103611255 - MLT1E1 LTR MaLR -2 652 3 286 281 129 7 chr11 45172469 45172608 -103610864 + MIR SINE MIR 95 250 -12 518 303 88 34 chr11 45173182 45173420 -103610052 - MIR SINE MIR -5 257 7 237 328 69 23 chr11 45174558 45174689 -103608783 + MIR SINE MIR 59 195 -67 553 13 26 13 chr11 45175133 45175210 -103608262 - AluY SINE Alu -11 298 221 421 347 85 5 chr11 45175922 45176121 -103607351 + MIR SINE MIR 3 217 -45 279 311 99 51 chr11 45176404 45176758 -103606714 + MLT1I LTR MaLR 39 409 0 1734 275 28 16 chr11 45177084 45177589 -103605883 - LTR40a LTR ERVL 0 519 9 443 324 45 0 chr11 45177752 45177931 -103605541 - HERVL68 LTR ERVL -66 2971 2785 262 273 91 30 chr11 45177907 45178006 -103605466 - MER70-int LTR ERVL -349 4674 4570 * 2146 116 0 3 chr11 45179230 45179523 -103603949 - AluSg SINE Alu -18 292 1 2057 185 69 5 chr11 45179808 45180198 -103603274 - MSTA LTR MaLR 0 428 14 31 0 0 0 chr11 45180646 45180677 -103602795 + AT_rich Low_complexity Low_complexity 1 31 0 313 224 83 70 chr11 45181150 45181306 -103602166 + MIR SINE MIR 104 261 -1 236 328 0 0 chr11 45181785 45181852 -103601620 + (TATG)n Simple_repeat Simple_repeat 1 67 0 1300 204 71 96 chr11 45182458 45182967 -103600505 + LTR54B LTR ERV1 3 498 0 1493 212 80 9 chr11 45185385 45185710 -103597762 - MER7A DNA MER2_type 0 346 1 410 255 129 34 chr11 45187399 45187662 -103595810 - LTR43 LTR ERV1 -124 478 191 362 300 27 0 chr11 45188153 45188263 -103595209 + MER5A DNA MER1_type 1 113 -76 330 305 102 25 chr11 45188350 45188468 -103595004 - L2 LINE L2 -5 3267 3141 201 262 0 66 chr11 45189417 45189478 -103593994 + L2 LINE L2 3257 3313 0 300 313 30 69 chr11 45189725 45189856 -103593616 + L2 LINE L2 3182 3307 -6 419 338 28 0 chr11 45189859 45190004 -103593468 - LTR16C LTR ERVL -3 488 340 551 253 89 39 chr11 45190352 45190633 -103592839 - L1MDa LINE L1 -6194 346 52 632 280 47 14 chr11 45191506 45191720 -103591752 + MIR SINE MIR 39 259 -3 2012 152 27 38 chr11 45192081 45192449 -103591023 + THE1B LTR MaLR 1 364 0 11203 110 6 0 chr11 45192449 45194019 -103589453 + THE1B-int LTR MaLR 1 1580 0 1979 168 27 41 chr11 45194019 45194388 -103589084 + THE1B LTR MaLR 1 364 0 314 277 12 0 chr11 45194518 45194601 -103588871 + MIR3 SINE MIR 122 205 -3 377 244 62 56 chr11 45194890 45195050 -103588422 - MIR SINE MIR -55 207 47 308 278 111 0 chr11 45195394 45195502 -103587970 - MIR SINE MIR -43 219 100 367 317 22 97 chr11 45196271 45196498 -103586974 + L2 LINE L2 3040 3249 -23 1193 347 34 0 chr11 45196581 45196999 -103586473 + LTR16A LTR ERVL 17 448 -2 752 293 55 61 chr11 45197516 45197974 -103585498 - LTR16A1 LTR ERVL -2 455 1 1479 325 60 7 chr11 45197991 45198797 -103584675 - L2 LINE L2 -4 3309 2452 1788 129 0 0 chr11 45198920 45199198 -103584274 - L1PA13 LINE L1 -4 6159 5882 3229 296 134 27 chr11 45199612 45201236 -103582236 - L2 LINE L2 -867 2447 651 385 161 25 34 chr11 45201525 45201643 -103581829 + CT-rich Low_complexity Low_complexity 1 117 0 1768 207 29 0 chr11 45202722 45203099 -103580373 + MLT1B LTR MaLR 3 390 0 2049 122 35 0 chr11 45203439 45203725 -103579747 + AluSx SINE Alu 3 298 -14 305 375 0 0 chr11 45203863 45203975 -103579497 - L2 LINE L2 -12 3301 3190 180 0 0 0 chr11 45204023 45204043 -103579429 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2186 123 3 0 chr11 45204057 45204366 -103579106 + AluSp SINE Alu 1 310 -3 390 246 57 8 chr11 45204395 45204517 -103578955 + L2 LINE L2 3182 3309 -4 369 295 74 50 chr11 45204758 45205016 -103578456 - L1ME4a LINE L1 -25 6096 5833 1834 183 0 3 chr11 45205022 45205334 -103578138 + AluSx SINE Alu 1 311 -1 1068 122 0 0 chr11 45205551 45205707 -103577765 - L1PA13 LINE L1 -14 6149 5994 2106 103 3 0 chr11 45205707 45205998 -103577474 + L1PA13 LINE L1 5683 5974 -194 354 172 152 20 chr11 45206017 45206116 -103577356 - L1MA7 LINE L1 -22 6269 6158 957 324 31 55 chr11 45206305 45206380 -103577092 - L2 LINE L2 0 3313 3238 207 88 0 0 chr11 45206380 45206414 -103577058 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 957 324 31 55 chr11 45206414 45206850 -103576622 - L2 LINE L2 -75 3238 2814 506 322 25 34 chr11 45206867 45207103 -103576369 - L2 LINE L2 -1849 1465 1232 278 347 91 0 chr11 45207672 45207793 -103575679 + MER117 DNA MER1_type 11 142 -55 21 0 0 0 chr11 45208021 45208042 -103575430 + AT_rich Low_complexity Low_complexity 1 21 0 960 386 49 17 chr11 45208162 45208871 -103574601 - L2 LINE L2 -406 2908 2177 290 315 77 52 chr11 45209291 45209615 -103573857 + L2 LINE L2 1870 2201 -1113 29 60 0 0 chr11 45210432 45210482 -103572990 + AT_rich Low_complexity Low_complexity 1 50 0 200 171 65 16 chr11 45211712 45211835 -103571637 + (TA)n Simple_repeat Simple_repeat 2 130 0 404 140 58 18 chr11 45211852 45212023 -103571449 + (TA)n Simple_repeat Simple_repeat 2 179 0 345 183 44 50 chr11 45212091 45212271 -103571201 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 261 0 0 chr11 45212401 45212447 -103571025 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 459 335 72 48 chr11 45213412 45213705 -103569767 - MERVL LTR ERVL -693 5071 4772 397 319 112 24 chr11 45214017 45214466 -103569006 - MERVL LTR ERVL -1279 4206 3861 539 368 48 31 chr11 45215206 45215682 -103567790 - MERVL LTR ERVL -2641 3123 2640 23 33 0 0 chr11 45215714 45215744 -103567728 + AT_rich Low_complexity Low_complexity 1 30 0 356 291 103 36 chr11 45215954 45216233 -103567239 + LTR16B LTR ERVL 148 463 0 642 128 0 0 chr11 45216631 45216733 -103566739 - L1PA15 LINE L1 -2 6163 6062 1102 313 119 20 chr11 45216739 45217478 -103565994 - HAL1 LINE L1 -1593 914 103 2357 140 3 6 chr11 45218172 45218537 -103564935 + THE1B LTR MaLR 1 364 0 302 232 0 42 chr11 45219146 45219241 -103564231 + L1MC4 LINE L1 6614 6704 -1338 214 207 17 0 chr11 45219241 45219299 -103564173 + (TA)n Simple_repeat Simple_repeat 1 59 0 649 311 57 86 chr11 45220349 45220881 -103562591 + L1MEc LINE L1 36 582 -5814 3213 159 20 6 chr11 45220881 45221423 -103562049 + MER41C LTR ERV1 5 554 0 649 311 57 86 chr11 45221423 45222062 -103561410 + L1MEc LINE L1 582 1173 -5223 230 351 14 0 chr11 45222111 45222185 -103561287 - MLT1K LTR MaLR -347 241 167 767 313 78 17 chr11 45222204 45222498 -103560974 - MLT1I LTR MaLR -2 407 96 1401 131 14 0 chr11 45222557 45222778 -103560694 + LTR1 LTR ERV1 29 252 -533 15129 105 4 12 chr11 45222915 45225225 -103558247 + L1PA7 LINE L1 2292 4583 -1563 6677 72 8 1 chr11 45225225 45226549 -103556923 + L1PA7 LINE L1 4809 6138 -16 273 89 0 0 chr11 45226551 45226596 -103556876 + (TA)n Simple_repeat Simple_repeat 2 46 0 850 263 17 13 chr11 45227061 45227293 -103556179 + L1M4 LINE L1 20 252 -6290 1951 197 13 26 chr11 45227298 45227684 -103555788 + MSTB LTR MaLR 46 426 0 6992 196 24 12 chr11 45227684 45229050 -103554422 + MSTB-int LTR MaLR 1 1383 -268 2146 134 0 3 chr11 45229232 45229524 -103553948 - AluSx SINE Alu -21 291 1 2298 162 10 31 chr11 45229524 45229931 -103553541 + MSTB LTR MaLR 29 426 0 492 212 26 0 chr11 45229934 45230047 -103553425 + L1M4 LINE L1 4439 4554 -1592 7752 20 0 0 chr11 45230097 45231179 -103552293 + L1P1 LINE L1 4481 5562 -593 6846 13 1 0 chr11 45231179 45231957 -103551515 + L1PA2 LINE L1 5373 6154 -1 191 81 54 0 chr11 45232979 45233016 -103550456 + A-rich Low_complexity Low_complexity 2 40 0 1519 172 0 0 chr11 45233310 45233554 -103549918 + AluJo SINE Alu 57 300 -12 1578 122 36 0 chr11 45233555 45233776 -103549696 + AluSg/x SINE Alu 66 294 -16 7436 196 18 6 chr11 45233778 45235373 -103548099 + L1 LINE L1 2778 4392 -1754 966 142 0 0 chr11 45235373 45235514 -103547958 + AluJb SINE Alu 160 300 -12 752 168 7 0 chr11 45235595 45235750 -103547722 + L1 LINE L1 4397 4552 -1594 315 329 34 27 chr11 45285751 45285897 -103497575 - MIR3 SINE MIR -52 156 10 1638 177 77 32 chr11 45286522 45286865 -103496607 + MLT2C1 LTR ERVL 3 366 -31 272 70 23 0 chr11 45286865 45286908 -103496564 + (CA)n Simple_repeat Simple_repeat 2 45 0 1638 177 77 32 chr11 45286908 45286942 -103496530 + MLT2C1 LTR ERVL 366 397 0 799 245 215 11 chr11 45286993 45287360 -103496112 - MLT1J2 LTR MaLR -8 442 1 26 74 0 0 chr11 45289477 45289531 -103493941 + AT_rich Low_complexity Low_complexity 1 54 0 2125 129 7 0 chr11 45289866 45290168 -103493304 + AluSx SINE Alu 1 304 -8 374 172 0 0 chr11 45290950 45291014 -103492458 - Alu SINE Alu 0 300 237 193 308 64 0 chr11 45291022 45291100 -103492372 + MIR SINE MIR 124 206 -56 3795 117 33 11 chr11 45291365 45291468 -103492004 - L1PA12 LINE L1 0 6168 6069 2546 95 11 19 chr11 45291468 45291846 -103491626 - THE1C LTR MaLR 0 375 1 3795 117 33 11 chr11 45291846 45292350 -103491122 - L1PA12 LINE L1 -99 6069 5548 1357 133 20 5 chr11 45293185 45293388 -103490084 - AluSg/x SINE Alu -8 304 99 225 0 0 0 chr11 45293671 45293696 -103489776 + (TC)n Simple_repeat Simple_repeat 2 26 0 336 24 0 0 chr11 45293698 45293739 -103489733 + (CA)n Simple_repeat Simple_repeat 1 41 0 200 114 29 0 chr11 45293952 45293987 -103489485 + (TTG)n Simple_repeat Simple_repeat 1 36 0 941 217 22 60 chr11 45293991 45294258 -103489214 + MLT1A1 LTR MaLR 4 260 -105 407 102 17 0 chr11 45294392 45294451 -103489021 + MLT1A1 LTR MaLR 314 373 -1 212 241 0 35 chr11 45294649 45294707 -103488765 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4856 211 69 97 chr11 45295556 45297041 -103486431 + L1MC3 LINE L1 5476 6859 -926 5721 165 19 14 chr11 45297071 45298679 -103484793 - L1MA8 LINE L1 -5 7307 5690 2316 138 3 35 chr11 45298679 45299055 -103484417 + THE1B LTR MaLR 1 364 0 1312 103 5 0 chr11 45299055 45299240 -103484232 + THE1B-int LTR MaLR 1 186 -1394 1867 155 3 14 chr11 45299240 45299537 -103483935 + AluSq SINE Alu 1 294 -19 390 324 0 0 chr11 45300044 45300152 -103483320 + MIR SINE MIR 46 153 -109 1028 250 81 18 chr11 45300171 45300443 -103483029 - L1MC4a LINE L1 -917 6891 6603 2438 244 70 21 chr11 45300471 45300561 -103482911 + L1MC4a LINE L1 6942 7026 -782 186 43 0 0 chr11 45300561 45300584 -103482888 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2438 244 70 21 chr11 45300584 45301368 -103482104 + L1MC4a LINE L1 7026 7808 0 185 62 0 31 chr11 45301482 45301514 -103481958 + (TTA)n Simple_repeat Simple_repeat 1 31 0 802 187 113 30 chr11 45301958 45302159 -103481313 + MLT1C LTR MaLR 1 218 -249 1791 87 31 8 chr11 45302159 45302413 -103481059 + MLT2A1 LTR ERVL 1 260 -184 18455 56 19 1 chr11 45302418 45304701 -103478771 + HERVL LTR ERVL 3317 5640 -14 1010 212 39 12 chr11 45304701 45304715 -103478757 + MLT1C LTR MaLR 200 212 -255 2868 87 36 25 chr11 45304715 45305154 -103478318 + MLT2A1 LTR ERVL 1 444 0 1010 212 39 12 chr11 45305154 45305398 -103478074 + MLT1C LTR MaLR 212 465 -2 1388 123 10 5 chr11 45306078 45306282 -103477190 + AluSx SINE Alu 36 240 -72 4105 102 3 3 chr11 45306382 45306948 -103476524 + THE1B-int LTR MaLR 233 798 -782 2664 84 0 0 chr11 45306947 45307292 -103476180 + THE1B-int LTR MaLR 1233 1577 -3 * 2244 144 3 35 chr11 45307295 45307671 -103475801 + THE1B LTR MaLR 1 364 0 215 245 0 0 chr11 45307724 45307777 -103475695 + T-rich Low_complexity Low_complexity 5 57 0 8138 237 72 24 chr11 45307823 45310859 -103472613 - L1MA8 LINE L1 -1709 5458 2475 1958 139 41 35 chr11 45310859 45311226 -103472246 + THE1C LTR MaLR 5 373 -2 8138 237 72 24 chr11 45311226 45312156 -103471316 - L1MA8 LINE L1 -4692 2475 1591 1532 205 50 40 chr11 45313069 45313328 -103470144 + L1MC3 LINE L1 6870 7136 -649 1608 215 3 3 chr11 45313328 45313630 -103469842 - AluJb SINE Alu -10 302 1 1532 205 50 40 chr11 45313630 45313794 -103469678 + L1MC3 LINE L1 7136 7297 -488 198 0 0 0 chr11 45313816 45313838 -103469634 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 5645 43 20 0 chr11 45313844 45314535 -103468937 - L1PA5 LINE L1 -2 6152 5448 23 0 0 0 chr11 45314638 45314661 -103468811 + AT_rich Low_complexity Low_complexity 1 23 0 191 36 36 0 chr11 45314817 45314845 -103468627 + (TAA)n Simple_repeat Simple_repeat 3 31 0 285 305 92 15 chr11 45315420 45315551 -103467921 + MIR SINE MIR 78 218 -44 240 314 57 48 chr11 45315531 45315636 -103467836 - MIR SINE MIR -156 106 1 * 198 267 139 50 chr11 45315796 45315897 -103467575 + L2 LINE L2 3201 3310 -3 813 93 0 47 chr11 45316119 45316248 -103467224 + L1PA8 LINE L1 6037 6159 -13 391 340 148 27 chr11 45316375 45316707 -103466765 + L2 LINE L2 2714 3091 -181 213 318 0 0 chr11 45316904 45316970 -103466502 + CT-rich Low_complexity Low_complexity 3 68 0 263 353 43 0 chr11 45317407 45317523 -103465949 - MIR3 SINE MIR -2 206 86 29 47 0 0 chr11 45318435 45318478 -103464994 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 45318591 45318620 -103464852 + AT_rich Low_complexity Low_complexity 1 29 0 280 294 126 45 chr11 45318711 45318997 -103464475 + L1ME LINE L1 5350 5658 -463 3098 214 28 0 chr11 45319155 45319766 -103463706 + L1PA15 LINE L1 1 628 -6159 2654 215 28 14 chr11 45319746 45320309 -103463163 + L1PA15 LINE L1 1153 1723 -5064 * 13010 224 18 19 chr11 45320329 45323061 -103460411 + L1PA15 LINE L1 1839 4571 -2226 1271 203 45 31 chr11 45323061 45323347 -103460125 + AluJo SINE Alu 3 292 -20 13010 224 18 19 chr11 45323347 45323385 -103460087 + L1PA15 LINE L1 4571 4608 -2189 4453 119 41 46 chr11 45323385 45324168 -103459304 - MER4E LTR ERV1 0 779 1 13010 224 18 19 chr11 45324168 45324493 -103458979 + L1PA15 LINE L1 4608 4932 -1865 1976 122 25 69 chr11 45324493 45324622 -103458850 + THE1C LTR MaLR 1 134 -241 2050 156 0 6 chr11 45324622 45324937 -103458535 - AluSq SINE Alu 0 313 1 1976 122 25 69 chr11 45324937 45325199 -103458273 + THE1C LTR MaLR 134 375 0 13010 224 18 19 chr11 45325199 45325600 -103457872 + L1PA15 LINE L1 4932 5322 -1475 2047 160 45 27 chr11 45325600 45326135 -103457337 + MLT2A2 LTR ERVL 1 545 -9 5477 144 6 6 chr11 45326135 45327638 -103455834 + L1PA15 LINE L1 5309 6808 -8 195 325 123 26 chr11 45327992 45328146 -103455326 + MIR SINE MIR 79 247 -15 1167 287 60 57 chr11 45329537 45330190 -103453282 - L2 LINE L2 0 3313 2668 240 226 0 0 chr11 45331009 45331071 -103452401 + (ATG)n Simple_repeat Simple_repeat 2 63 0 706 211 14 14 chr11 45331381 45331528 -103451944 - MER5A DNA MER1_type -40 149 3 234 288 144 38 chr11 45333225 45333357 -103450115 - MIR SINE MIR -115 147 2 308 285 52 64 chr11 45333547 45333719 -103449753 - MIR SINE MIR -87 175 6 246 301 136 10 chr11 45334732 45334835 -103448637 + MIR SINE MIR 141 256 -6 24 0 0 0 chr11 45335032 45335056 -103448416 + AT_rich Low_complexity Low_complexity 1 24 0 307 316 6 63 chr11 45335198 45335356 -103448116 + MER5B DNA MER1_type 30 178 0 709 224 98 17 chr11 45335846 45336081 -103447391 - L1ME LINE L1 -515 5647 5372 1117 225 103 13 chr11 45336090 45336401 -103447071 + L1ME3 LINE L1 5615 5953 -209 516 274 0 0 chr11 45336484 45336608 -103446864 + MER45A DNA AcHobo 55 178 0 647 253 6 19 chr11 45336612 45336774 -103446698 + L1ME3 LINE L1 5996 6155 -7 669 323 36 5 chr11 45336922 45337145 -103446327 - MIR SINE MIR -1 261 32 196 277 34 118 chr11 45338548 45338667 -103444805 - MIR3 SINE MIR -5 203 95 297 287 15 7 chr11 45339126 45339262 -103444210 + (TA)n Simple_repeat Simple_repeat 2 138 0 396 365 51 19 chr11 45340024 45340238 -103443234 - MIR SINE MIR -30 232 12 1696 182 70 14 chr11 45340802 45341171 -103442301 - MLT1B LTR MaLR 0 390 1 306 368 41 15 chr11 45341455 45341721 -103441751 + MLT1K LTR MaLR 311 583 -5 230 302 0 16 chr11 45341872 45341935 -103441537 - L2 LINE L2 -1 3271 3210 501 263 52 33 chr11 45341935 45342148 -103441324 + MER106A DNA MER1_type 5 221 -15 279 273 94 75 chr11 45342646 45342913 -103440559 - MLT1L LTR MaLR -199 416 145 368 246 8 0 chr11 45343016 45343138 -103440334 + (TA)n Simple_repeat Simple_repeat 1 123 0 1768 197 139 17 chr11 45343514 45343980 -103439492 - MER63 DNA MER1_type -1 1059 537 3139 200 12 5 chr11 45344061 45344711 -103438761 + L1MD1 LINE L1 5588 6242 0 189 344 109 10 chr11 45344827 45345019 -103438453 + L2 LINE L2 2148 2358 -956 240 301 0 12 chr11 45345022 45345105 -103438367 + L1ME1 LINE L1 4873 4954 -1192 383 252 28 56 chr11 45345129 45345947 -103437525 + L1ME1 LINE L1 4942 5880 -286 1822 185 10 0 chr11 45345947 45346249 -103437223 + AluJo SINE Alu 1 305 -7 383 252 28 56 chr11 45346249 45346529 -103436943 + L1ME1 LINE L1 5880 6166 0 749 269 35 10 chr11 45347672 45347904 -103435568 + MLT1H LTR MaLR 28 244 -305 3660 71 2 2 chr11 45347992 45348469 -103435003 + L1PA6 LINE L1 5673 6149 -5 557 311 183 32 chr11 45348868 45349360 -103434112 + MLT1K LTR MaLR 5 570 -18 286 312 7 71 chr11 45350434 45350575 -103432897 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 45350604 45350672 -103432800 - L2 LINE L2 0 3272 3201 1571 233 37 27 chr11 45351995 45352510 -103430962 - Charlie1b DNA MER1_type -3 520 1 240 333 85 54 chr11 45352634 45353024 -103430448 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 45353050 45353185 -103430287 + MIR SINE MIR 20 156 -106 553 337 98 34 chr11 45353188 45353666 -103429806 - L2 LINE L2 -1 3312 2804 236 346 0 19 chr11 45353676 45353780 -103429692 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 45354018 45354044 -103429428 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42172 40 23 1 chr11 45354047 45360040 -103423432 - L1PA2 LINE L1 -25 6130 1 961 292 35 16 chr11 45360641 45360953 -103422519 - MLT1I LTR MaLR -29 380 63 319 336 65 70 chr11 45361063 45361184 -103422288 + MIR SINE MIR 28 149 -113 3999 152 27 4 chr11 45361184 45361877 -103421595 + L1PA16 LINE L1 5452 6160 -6 319 336 65 70 chr11 45361877 45361984 -103421488 + MIR SINE MIR 149 255 -7 197 358 133 28 chr11 45361987 45362339 -103421133 + L2 LINE L2 1789 2177 -1137 382 298 147 22 chr11 45362346 45362571 -103420901 + MIR SINE MIR 5 257 -5 471 340 19 12 chr11 45362827 45363083 -103420389 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 45364806 45364827 -103418645 + AT_rich Low_complexity Low_complexity 1 21 0 264 339 60 18 chr11 45365105 45365323 -103418149 + L1MC/D LINE L1 5510 5736 -2072 21 36 0 0 chr11 45365327 45365355 -103418117 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 45365941 45365963 -103417509 + AT_rich Low_complexity Low_complexity 1 22 0 228 301 168 0 chr11 45366254 45366367 -103417105 - L2 LINE L2 -1 3312 3181 1518 203 3 10 chr11 45366396 45366707 -103416765 + AluJo SINE Alu 1 309 -3 1162 249 40 43 chr11 45368349 45368747 -103414725 + MLT2C1 LTR ERVL 1 397 0 28 91 0 0 chr11 45368944 45369021 -103414451 + AT_rich Low_complexity Low_complexity 1 77 0 1270 157 9 0 chr11 45369201 45369418 -103414054 - AluJo SINE Alu -10 302 84 22 0 0 0 chr11 45370627 45370649 -103412823 + AT_rich Low_complexity Low_complexity 1 22 0 298 281 9 129 chr11 45371248 45371458 -103412014 + L2 LINE L2 3088 3272 0 191 237 0 0 chr11 45371534 45371572 -103411900 + MIR SINE MIR 157 194 -68 378 263 11 11 chr11 45372687 45372782 -103410690 - MIR3 SINE MIR -54 154 60 301 261 51 70 chr11 45372892 45373049 -103410423 + MIR SINE MIR 69 222 -40 371 318 97 13 chr11 45374424 45374578 -103408894 + MER5B DNA MER1_type 2 168 -10 189 107 0 0 chr11 45374763 45374791 -103408681 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 332 293 91 24 chr11 45374923 45375131 -103408341 - L2 LINE L2 -167 3105 2884 2575 196 30 3 chr11 45375158 45375746 -103407726 - MER39 LTR ERV1 0 707 20 4533 212 48 85 chr11 45376211 45377780 -103405692 + L1M4 LINE L1 17 1527 -5015 210 236 0 0 chr11 45377783 45377838 -103405634 + (CA)n Simple_repeat Simple_repeat 2 56 0 461 223 10 19 chr11 45377838 45377941 -103405531 - Tigger7 DNA MER2_type 0 2587 2486 6131 62 1 15 chr11 45377942 45378761 -103404711 - L1PA4 LINE L1 -3 6152 5345 333 349 31 8 chr11 45379115 45379244 -103404228 + MIR SINE MIR 45 176 -86 460 326 126 33 chr11 45379325 45379745 -103403727 - L3 LINE CR1 -785 792 334 22 0 0 0 chr11 45379787 45379809 -103403663 + AT_rich Low_complexity Low_complexity 1 22 0 334 338 29 7 chr11 45380909 45381045 -103402427 - MIR SINE MIR -91 171 33 354 371 81 31 chr11 45381153 45381474 -103401998 + L2 LINE L2 2936 3272 0 243 146 0 0 chr11 45381535 45381576 -103401896 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 228 163 0 0 chr11 45383387 45383430 -103400042 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 250 83 9 chr11 45383434 45383542 -103399930 - L1ME4a LINE L1 -4 6117 6002 598 270 17 23 chr11 45383560 45383734 -103399738 - L2 LINE L2 0 3313 3141 1310 270 127 7 chr11 45383750 45384169 -103399303 + LTR33 LTR ERVL 48 516 -5 2443 113 0 0 chr11 45384210 45384539 -103398933 + THE1B LTR MaLR 34 362 -2 221 220 17 34 chr11 45384612 45384671 -103398801 - L2 LINE L2 -219 3053 2996 270 81 0 0 chr11 45384713 45384750 -103398722 + (GA)n Simple_repeat Simple_repeat 2 38 0 363 253 79 56 chr11 45384809 45384987 -103398485 - L1ME4a LINE L1 -230 5891 5710 191 299 182 0 chr11 45386322 45386399 -103397073 - MIR SINE MIR -108 154 64 533 338 62 44 chr11 45386907 45387182 -103396290 + L2 LINE L2 2993 3272 0 2235 123 0 3 chr11 45387200 45387502 -103395970 + AluSp SINE Alu 1 301 -12 1368 232 25 22 chr11 45387758 45388124 -103395348 - LTR52 LTR ERVL -25 396 30 930 275 54 80 chr11 45388133 45388522 -103394950 + MLT1E LTR MaLR 52 430 -163 240 318 152 0 chr11 45388773 45388905 -103394567 - MIR SINE MIR -55 207 56 1720 172 0 0 chr11 45389356 45389618 -103393854 + AluSx SINE Alu 1 262 -50 366 353 52 17 chr11 45389810 45389983 -103393489 - HAL1b LINE L1 -911 437 259 26034 65 3 1 chr11 45389993 45396123 -103387349 - L1PA5 LINE L1 -8 6146 5 281 312 7 71 chr11 45396690 45396831 -103386641 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 45396860 45396928 -103386544 - L2 LINE L2 0 3272 3201 1517 233 37 27 chr11 45398251 45398766 -103384706 - Charlie1b DNA MER1_type -3 520 1 238 333 85 54 chr11 45398890 45399280 -103384192 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 45399306 45399441 -103384031 + MIR SINE MIR 20 156 -106 548 337 98 34 chr11 45399444 45399922 -103383550 - L2 LINE L2 -1 3312 2804 238 346 0 19 chr11 45399932 45400036 -103383436 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 45400274 45400300 -103383172 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 40244 39 23 1 chr11 45400301 45406295 -103377177 - L1PA2 LINE L1 -23 6132 1 860 292 35 16 chr11 45406896 45407208 -103376264 - MLT1I LTR MaLR -29 380 63 312 336 65 70 chr11 45407318 45407439 -103376033 + MIR SINE MIR 28 149 -113 3963 152 27 4 chr11 45407439 45408132 -103375340 + L1PA16 LINE L1 5452 6160 -6 312 336 65 70 chr11 45408132 45408239 -103375233 + MIR SINE MIR 149 255 -7 203 358 133 28 chr11 45408242 45408594 -103374878 + L2 LINE L2 1789 2177 -1137 384 298 147 22 chr11 45408601 45408826 -103374646 + MIR SINE MIR 5 257 -5 445 363 8 0 chr11 45409082 45409338 -103374134 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 45411061 45411082 -103372390 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 45411582 45411610 -103371862 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 45412196 45412218 -103371254 + AT_rich Low_complexity Low_complexity 1 22 0 236 301 168 0 chr11 45412509 45412622 -103370850 - L2 LINE L2 -1 3312 3181 1627 193 3 10 chr11 45412651 45412962 -103370510 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr11 45413016 45413037 -103370435 + AT_rich Low_complexity Low_complexity 1 21 0 186 348 0 0 chr11 45413094 45413140 -103370332 + L2 LINE L2 3141 3186 -86 463 274 49 24 chr11 45413375 45413663 -103369809 + AluJo SINE Alu 14 308 -4 180 353 22 59 chr11 45413794 45413930 -103369542 + L2 LINE L2 3141 3271 -1 2784 16 0 0 chr11 45414259 45414568 -103368904 - AluYb8 SINE Alu -9 309 1 372 360 80 25 chr11 45415241 45415441 -103368031 + MIR SINE MIR 32 242 -20 1001 201 28 19 chr11 45415482 45415696 -103367776 + MER20 DNA MER1_type 1 216 -3 2346 98 0 0 chr11 45416866 45417162 -103366310 - AluSc SINE Alu -11 298 3 2257 89 7 3 chr11 45417407 45417698 -103365774 + AluY SINE Alu 2 293 -18 183 273 20 81 chr11 45418128 45418227 -103365245 - MIR SINE MIR -71 191 99 709 292 0 16 chr11 45418315 45418500 -103364972 + MIR SINE MIR 17 198 -64 375 270 0 11 chr11 45418562 45418651 -103364821 - MER2 DNA MER2_type -256 89 2 2260 107 0 0 chr11 45418721 45419010 -103364462 - AluY SINE Alu -22 289 1 196 143 71 0 chr11 45419083 45419125 -103364347 - MIR SINE MIR -98 164 120 1303 260 78 74 chr11 45419130 45419556 -103363916 - MLT1G LTR MaLR -4 586 161 3268 132 12 6 chr11 45419556 45420050 -103363422 - LOR1a LTR ERV1 0 497 1 1303 260 78 74 chr11 45420050 45420203 -103363269 - MLT1G LTR MaLR -429 161 10 1214 285 80 43 chr11 45420672 45421346 -103362126 + L2 LINE L2 2620 3313 0 1637 245 52 21 chr11 45421689 45422154 -103361318 + MLT1D LTR MaLR 1 479 -26 676 284 73 82 chr11 45423649 45424084 -103359388 - MLT1H1 LTR MaLR 0 555 124 2094 87 0 0 chr11 45424084 45424374 -103359098 - AluY SINE Alu 0 307 18 676 284 73 82 chr11 45424374 45424497 -103358975 - MLT1H1 LTR MaLR -431 124 1 27 0 0 0 chr11 45424520 45424547 -103358925 + AT_rich Low_complexity Low_complexity 1 27 0 2426 92 0 0 chr11 45425217 45425522 -103357950 + AluY SINE Alu 1 305 -6 267 225 12 12 chr11 45425548 45425628 -103357844 + L1M4 LINE L1 2460 2539 -3607 865 210 115 92 chr11 45425884 45425928 -103357544 + MSTD LTR MaLR 1 43 -353 2098 110 7 20 chr11 45425928 45426228 -103357244 - AluSx SINE Alu -14 298 3 865 210 115 92 chr11 45426228 45426540 -103356932 + MSTD LTR MaLR 43 396 0 6238 31 2 0 chr11 45428408 45429214 -103354258 - L1PA3 LINE L1 -2738 3408 2601 16099 40 0 1 chr11 45429214 45431960 -103351512 + L1PA3 LINE L1 3407 6155 0 24 32 0 0 chr11 45432151 45432182 -103351290 + AT_rich Low_complexity Low_complexity 1 31 0 2015 218 51 28 chr11 45432186 45432714 -103350758 - MER89 LTR ERV1 -11 548 9 22 0 0 0 chr11 45432869 45432891 -103350581 + AT_rich Low_complexity Low_complexity 1 22 0 970 217 44 0 chr11 45433431 45433634 -103349838 - MER20 DNA MER1_type -1 218 7 208 329 124 29 chr11 45433663 45433800 -103349672 + MER5A DNA MER1_type 39 188 -1 277 312 28 9 chr11 45433810 45433919 -103349553 + L3 LINE CR1 1208 1318 -259 286 361 46 15 chr11 45433969 45434099 -103349373 + L3 LINE CR1 1430 1563 -14 247 269 65 65 chr11 45434230 45434338 -103349134 - MER5B DNA MER1_type -4 174 67 291 326 72 23 chr11 45434339 45434497 -103348975 - MIR SINE MIR -68 140 19 404 332 82 20 chr11 45435134 45435378 -103348094 - MIR SINE MIR 0 262 4 308 333 87 13 chr11 45436772 45436922 -103346550 - MIR SINE MIR -70 192 32 373 346 70 16 chr11 45437050 45437235 -103346237 + MIR SINE MIR 13 207 -55 512 323 57 31 chr11 45437378 45437607 -103345865 + MIR SINE MIR 7 241 -21 773 322 88 41 chr11 45437979 45438398 -103345074 - L2 LINE L2 -32 3281 2843 328 367 23 8 chr11 45438424 45438552 -103344920 + L2 LINE L2 3121 3250 -22 414 312 67 67 chr11 45438829 45439083 -103344389 + MLT1H LTR MaLR 12 268 -281 2186 125 3 3 chr11 45439083 45439394 -103344078 + AluSx SINE Alu 1 311 -1 414 312 67 67 chr11 45439394 45439527 -103343945 + MLT1H LTR MaLR 267 399 -150 240 369 19 0 chr11 45440517 45440620 -103342852 - MER81 DNA DNA -5 109 5 427 312 158 4 chr11 45440861 45441108 -103342364 - L2 LINE L2 0 3313 3029 332 154 0 77 chr11 45441108 45441186 -103342286 + MER77 LTR ERV1 368 439 -166 343 173 53 0 chr11 45441349 45441424 -103342048 + MER77 LTR ERV1 527 605 0 265 231 11 22 chr11 45441424 45441515 -103341957 + L1MEc LINE L1 1693 1782 -4614 * 500 283 108 9 chr11 45441511 45441723 -103341749 + L1ME3A LINE L1 5880 6112 -58 342 311 21 2 chr11 45441925 45442067 -103341405 + MIR SINE MIR 51 193 -63 21 0 0 0 chr11 45442397 45442418 -103341054 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 45442818 45442849 -103340623 + AT_rich Low_complexity Low_complexity 1 31 0 442 278 43 31 chr11 45442966 45443128 -103340344 - MIR3 SINE MIR -9 199 36 599 313 12 29 chr11 45443171 45443417 -103340055 + MIR SINE MIR 19 260 -2 192 40 0 0 chr11 45443773 45443798 -103339674 + (TG)n Simple_repeat Simple_repeat 2 26 0 260 319 85 0 chr11 45443906 45444000 -103339472 + MIR SINE MIR 45 146 -62 392 82 16 0 chr11 45444174 45444235 -103339237 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 704 191 8 0 chr11 45444235 45444361 -103339111 - FRAM SINE Alu -29 147 21 26 0 0 0 chr11 45444570 45444596 -103338876 + AT_rich Low_complexity Low_complexity 1 26 0 207 367 125 0 chr11 45444833 45444953 -103338519 - L2 LINE L2 -15 3257 3123 215 100 0 25 chr11 45445274 45445314 -103338158 + (TA)n Simple_repeat Simple_repeat 2 40 0 36 53 0 0 chr11 45445365 45445422 -103338050 + AT_rich Low_complexity Low_complexity 1 57 0 223 200 40 13 chr11 45445426 45445501 -103337971 + (TA)n Simple_repeat Simple_repeat 1 77 0 666 308 84 47 chr11 45445821 45445960 -103337512 + L2 LINE L2 2895 3027 -286 2265 84 3 32 chr11 45445960 45446268 -103337204 + AluY SINE Alu 1 299 -12 666 308 84 47 chr11 45446268 45446531 -103336941 + L2 LINE L2 3027 3312 -1 207 0 0 0 chr11 45446539 45446562 -103336910 + (T)n Simple_repeat Simple_repeat 1 23 0 2314 104 0 0 chr11 45447697 45447994 -103335478 - AluSx SINE Alu -9 303 7 334 315 49 14 chr11 45448487 45448630 -103334842 + MIR SINE MIR 49 196 -66 806 300 38 50 chr11 45448877 45449320 -103334152 + MLT1K LTR MaLR 138 575 -13 253 333 12 0 chr11 45449320 45449404 -103334068 + MIR SINE MIR 85 169 -93 2020 107 7 0 chr11 45449713 45449983 -103333489 + AluSq SINE Alu 1 272 -41 2362 143 3 6 chr11 45450726 45451091 -103332381 + THE1B LTR MaLR 1 364 0 9643 120 18 60 chr11 45451091 45452738 -103330734 + THE1B-int LTR MaLR 1 1578 -2 2608 115 3 3 chr11 45452740 45453104 -103330368 + THE1B LTR MaLR 1 364 0 2247 109 0 3 chr11 45453514 45453817 -103329655 - AluY SINE Alu -9 302 1 416 174 157 8 chr11 45453868 45453989 -103329483 + L1MC2 LINE L1 6206 6344 0 2085 79 14 0 chr11 45455185 45455476 -103327996 - L1PA7 LINE L1 -1692 4454 4160 6763 57 12 2 chr11 45455476 45457161 -103326311 + L1PA7 LINE L1 4462 6154 0 2116 128 0 0 chr11 45457347 45457643 -103325829 - AluSx SINE Alu -16 296 1 2738 82 0 0 chr11 45459205 45459560 -103323912 + THE1A LTR MaLR 1 355 0 1864 145 30 30 chr11 45459754 45460092 -103323380 - MER44D DNA MER2_type -1 608 1 312 311 19 10 chr11 45462002 45462105 -103321367 - LTR16B LTR ERVL -344 120 17 2243 91 7 13 chr11 45463054 45463362 -103320110 + AluSx SINE Alu 1 306 -6 2195 99 20 0 chr11 45464207 45464499 -103318973 - AluSp SINE Alu -13 300 3 24 53 0 0 chr11 45464742 45464780 -103318692 + AT_rich Low_complexity Low_complexity 1 38 0 195 293 17 0 chr11 45464840 45464898 -103318574 - MIR SINE MIR -65 197 139 186 222 22 0 chr11 45466316 45466361 -103317111 - MIR SINE MIR -56 206 161 2241 110 7 0 chr11 45466574 45466882 -103316590 - AluSp SINE Alu -3 310 1 52 69 0 0 chr11 45466983 45467084 -103316388 + AT_rich Low_complexity Low_complexity 1 101 0 236 186 26 53 chr11 45467150 45467263 -103316209 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 67 89 0 0 chr11 45467293 45467472 -103316000 + AT_rich Low_complexity Low_complexity 1 179 0 38 75 0 0 chr11 45467752 45467832 -103315640 + AT_rich Low_complexity Low_complexity 1 80 0 2300 112 0 6 chr11 45468273 45468585 -103314887 + AluSq SINE Alu 1 310 -3 6884 55 0 3 chr11 45468612 45469483 -103313989 + L1PA5 LINE L1 5282 6149 -5 341 362 40 7 chr11 45470106 45470255 -103313217 + MIR SINE MIR 23 176 -86 205 391 55 0 chr11 45470315 45470425 -103313047 + MIR SINE MIR 35 150 -112 273 290 0 0 chr11 45471341 45471403 -103312069 - L2 LINE L2 -2 3311 3250 746 331 76 39 chr11 45471635 45472426 -103311046 + L2 LINE L2 2485 3312 -1 1372 257 25 20 chr11 45472490 45472883 -103310589 - LTR52 LTR ERVL -26 395 1 2082 130 3 0 chr11 45472932 45473232 -103310240 - AluSc SINE Alu -8 301 1 281 336 103 14 chr11 45473232 45473378 -103310094 - L2 LINE L2 -567 2747 2589 2135 142 18 34 chr11 45474930 45475310 -103308162 - THE1C LTR MaLR -1 374 1 893 113 14 0 chr11 45475310 45475451 -103308021 - THE1C-int LTR MaLR 0 1580 1438 9214 129 52 20 chr11 45475451 45476946 -103306526 - THE1C-int LTR MaLR -38 1542 1 2021 164 16 24 chr11 45476946 45477324 -103306148 - THE1C LTR MaLR 0 375 1 465 322 91 13 chr11 45477430 45477961 -103305511 + L1ME4a LINE L1 5347 5915 -206 632 306 97 85 chr11 45479611 45480094 -103303378 - L2 LINE L2 -4 3309 2821 707 231 64 11 chr11 45480155 45480419 -103303053 - L1M4 LINE L1 -1485 4661 4384 1539 114 5 0 chr11 45480429 45480639 -103302833 - AluSq SINE Alu -102 211 1 267 191 0 0 chr11 45480639 45480702 -103302770 - L1M4 LINE L1 -3259 2887 2825 2182 170 28 28 chr11 45480705 45481134 -103302338 + Tigger2a DNA MER2_type 6 434 0 477 234 130 0 chr11 45481137 45481319 -103302153 - L1M4 LINE L1 -3324 2822 2614 14633 224 19 12 chr11 45481330 45484533 -103298939 - L1PA15 LINE L1 -8 6860 3605 2237 114 3 0 chr11 45484533 45484840 -103298632 + AluSc SINE Alu 1 308 -1 14633 224 19 12 chr11 45484840 45486662 -103296810 - L1PA15 LINE L1 -3263 3605 1798 1251 107 6 0 chr11 45486683 45486851 -103296621 + AluY SINE Alu 1 169 -142 35375 68 3 7 chr11 45486911 45491653 -103291819 + L1P LINE L1 2 4723 -1423 700 35 0 0 chr11 45491911 45491996 -103291476 + L1MA1 LINE L1 5881 5965 -337 516 239 9 104 chr11 45492748 45492970 -103290502 + LTR16A1 LTR ERVL 187 387 -70 187 312 198 32 chr11 45493058 45493215 -103290257 - MIR SINE MIR -65 197 15 1684 59 0 0 chr11 45493365 45493567 -103289905 - AluY SINE Alu -10 301 100 302 353 68 0 chr11 45493736 45493869 -103289603 + MIR SINE MIR 49 190 -72 22 0 0 0 chr11 45494267 45494289 -103289183 + AT_rich Low_complexity Low_complexity 1 22 0 240 86 0 0 chr11 45494313 45494348 -103289124 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 45494631 45494653 -103288819 + AT_rich Low_complexity Low_complexity 1 22 0 363 253 0 0 chr11 45494926 45495009 -103288463 - MER58A DNA MER1_type 0 112 30 194 301 96 0 chr11 45496024 45496097 -103287375 + MIR SINE MIR 28 107 -155 687 266 160 80 chr11 45496097 45496496 -103286976 + MLT1J2 LTR MaLR 1 431 -15 258 306 28 28 chr11 45496580 45496688 -103286784 - MIR SINE MIR -60 202 95 267 258 136 61 chr11 45496715 45496847 -103286625 + MIR SINE MIR 121 262 0 22 70 0 0 chr11 45497401 45497444 -103286028 + AT_rich Low_complexity Low_complexity 1 43 0 211 326 23 62 chr11 45498076 45498205 -103285267 + L2 LINE L2 2934 3057 -215 182 375 0 0 chr11 45498358 45498430 -103285042 + L2 LINE L2 2905 2976 -296 438 287 27 22 chr11 45498641 45498864 -103284608 - L1M4 LINE L1 -2123 4023 3800 227 213 0 16 chr11 45499150 45499211 -103284261 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 437 129 0 24 chr11 45499215 45499300 -103284172 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 716 123 0 0 chr11 45499536 45499650 -103283822 + AluY SINE Alu 195 308 -3 196 389 120 0 chr11 45500224 45500332 -103283140 - L2 LINE L2 0 3313 3193 * 306 248 75 105 chr11 45500330 45500463 -103283009 - L2 LINE L2 -1 3271 3143 192 429 83 0 chr11 45500522 45500655 -103282817 - L2 LINE L2 -18 3254 3111 309 333 62 16 chr11 45501184 45501313 -103282159 + L2 LINE L2 3176 3310 -3 378 279 30 55 chr11 45501455 45501656 -103281816 + MIR SINE MIR 55 250 -12 302 322 59 13 chr11 45503319 45503471 -103280001 - MIR SINE MIR -43 219 61 286 335 40 20 chr11 45503818 45503970 -103279502 + MIR SINE MIR 15 169 -93 975 127 0 4 chr11 45603989 45604708 -103178764 + HSATII Satellite Satellite 1 716 0 1107 106 0 23 chr11 45604741 45605129 -103178343 + HSATII Satellite Satellite 1 379 0 928 137 9 18 chr11 45605155 45605487 -103177985 + HSATII Satellite Satellite 1 329 -14 1047 90 1 47 chr11 45605523 45606292 -103177180 + HSATII Satellite Satellite 1 733 -1 596 163 0 7 chr11 45606267 45606402 -103177070 + (CATTC)n Satellite Satellite 2 135 0 * 525 105 0 0 chr11 45606464 45606550 -103176922 + (CATTC)n Satellite Satellite 5 90 0 1019 112 16 12 chr11 45606887 45608401 -103175071 - HSATII Satellite Satellite 0 1520 1 887 125 6 0 chr11 45608418 45608586 -103174886 - HSATII Satellite Satellite -1 169 1 1058 123 2 14 chr11 45608598 45610432 -103173040 - HSATII Satellite Satellite -72 1811 1 984 129 0 0 chr11 45610448 45610618 -103172854 - HSATII Satellite Satellite 0 170 1 870 137 0 0 chr11 45610644 45610848 -103172624 - HSATII Satellite Satellite 0 204 1 1074 124 3 14 chr11 45610870 45612726 -103170746 - HSATII Satellite Satellite -121 1835 1 953 99 0 14 chr11 45612756 45612973 -103170499 - HSATII Satellite Satellite -2 213 1 1191 164 6 2 chr11 45613087 45619678 -103163794 - ALR/Alpha Satellite centromeric -1 6615 1 1123 161 3 2 chr11 45619690 45622389 -103161083 - ALR/Alpha Satellite centromeric 0 2700 1 16142 39 1 2 chr11 45722393 45724479 -103058993 - L1P LINE L1 -1818 4328 2246 312 292 33 23 chr11 45725717 45725862 -103057610 + MIR SINE MIR 45 191 -71 309 253 32 10 chr11 45726387 45726504 -103056968 + MLT1I LTR MaLR 29 145 -264 252 248 2 103 chr11 45726638 45726755 -103056717 + MLT1G1 LTR MaLR 453 549 0 605 256 43 53 chr11 45727007 45727214 -103056258 + MER89 LTR ERV1 122 326 -233 226 0 29 29 chr11 45727414 45727449 -103056023 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7541 135 9 6 chr11 45727449 45728707 -103054765 - HSMAR2 DNA Mariner -39 1263 1 191 306 32 0 chr11 45728709 45728771 -103054701 - L2 LINE L2 -1523 1791 1728 566 285 64 69 chr11 45728785 45729392 -103054080 - L1M4 LINE L1 -2000 4146 3543 21 57 0 0 chr11 45729537 45729572 -103053900 + AT_rich Low_complexity Low_complexity 1 35 0 599 164 6 124 chr11 45729615 45729792 -103053680 - MER50 LTR ERV1 -130 604 449 * 1259 112 27 31 chr11 45729781 45730004 -103053468 - MER50 LTR ERV1 -512 222 1 2182 132 16 8 chr11 45730004 45730374 -103053098 - MER50-int LTR ERV1 -8 7197 6825 715 99 10 0 chr11 45730373 45730495 -103052977 - MER50-int LTR ERV1 -1018 6187 3912 * 345 275 95 82 chr11 45730502 45730818 -103052654 - L1M4 LINE L1 -2947 3199 2880 629 231 21 0 chr11 45731228 45731371 -103052101 - MIR SINE MIR 0 262 117 1021 239 64 21 chr11 45731412 45731742 -103051730 + MER2 DNA MER2_type 1 344 0 244 256 39 39 chr11 45731826 45731904 -103051568 - MIR SINE MIR -32 230 153 608 171 154 0 chr11 45731904 45732021 -103051451 - FLAM_C SINE Alu -8 135 1 2039 72 0 0 chr11 45732032 45732281 -103051191 - AluY SINE Alu -19 292 44 380 288 14 41 chr11 45732297 45732443 -103051029 - MIR SINE MIR -119 143 2 27417 45 2 2 chr11 45733312 45737660 -103045812 - L1PA4 LINE L1 -26 6129 1782 2031 94 55 7 chr11 45737845 45738152 -103045320 + AluSx SINE Alu 1 312 0 207 265 0 0 chr11 45738385 45738434 -103045038 + (ATG)n Simple_repeat Simple_repeat 2 50 0 608 252 175 15 chr11 45738449 45738655 -103044817 - MIR SINE MIR 0 262 24 666 152 0 9 chr11 45738655 45738786 -103044686 - AluJb SINE Alu 0 312 181 680 19 58 10 chr11 45738786 45738890 -103044582 + (TTTC)n Simple_repeat Simple_repeat 1 109 0 657 168 11 34 chr11 45738898 45739077 -103044395 + CT-rich Low_complexity Low_complexity 4 178 0 346 25 0 0 chr11 45739077 45739117 -103044355 + (TC)n Simple_repeat Simple_repeat 2 41 0 2080 116 0 0 chr11 45739118 45739386 -103044086 - AluSc SINE Alu -38 271 4 251 273 0 0 chr11 45739389 45739444 -103044028 - AluJ/monomer SINE Alu -248 55 1 245 267 53 0 chr11 45739898 45739973 -103043499 - L1MC4a LINE L1 -1883 5925 5847 201 39 0 0 chr11 45739987 45740013 -103043459 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2167 97 0 31 chr11 45740013 45740163 -103043309 - AluSq SINE Alu -32 281 142 2180 87 0 7 chr11 45740163 45740473 -103042999 - AluY SINE Alu 0 308 1 2167 97 0 31 chr11 45740473 45740611 -103042861 - AluSq SINE Alu -171 142 1 293 83 67 17 chr11 45740707 45740767 -103042705 + L1ME4a LINE L1 6028 6090 -31 250 265 10 71 chr11 45740814 45740912 -103042560 - MIR3 SINE MIR -32 176 85 1346 186 40 78 chr11 45741076 45741183 -103042289 + MLT1A1 LTR MaLR 1 111 -254 2117 103 38 0 chr11 45741183 45741475 -103041997 - AluSp SINE Alu -10 303 1 1346 186 40 78 chr11 45741475 45741738 -103041734 + MLT1A1 LTR MaLR 111 357 -8 290 248 212 44 chr11 45741824 45741961 -103041511 - L2 LINE L2 -1 3312 3153 1669 158 50 0 chr11 45742148 45742426 -103041046 - AluJo SINE Alu -19 293 2 1420 152 4 33 chr11 45742898 45743141 -103040331 - AluSg/x SINE Alu -9 303 68 2164 124 0 3 chr11 45743193 45743492 -103039980 - AluSx SINE Alu -14 298 1 246 345 36 0 chr11 45743870 45743954 -103039518 - MIR SINE MIR -168 94 8 506 161 21 0 chr11 45744073 45744166 -103039306 + MIR SINE MIR 151 245 -17 660 245 53 42 chr11 45744303 45744568 -103038904 - MLT1C LTR MaLR 0 467 200 192 143 0 0 chr11 45744801 45744843 -103038629 + (GA)n Simple_repeat Simple_repeat 1 42 0 584 250 89 12 chr11 45744897 45745065 -103038407 + MIR SINE MIR 75 255 -7 2305 54 41 7 chr11 45745115 45745410 -103038062 - AluY SINE Alu -6 305 1 1320 177 137 30 chr11 45745465 45745736 -103037736 + AluJb SINE Alu 1 300 -2 27 0 0 26 chr11 45745764 45745782 -103037690 + AT_rich Low_complexity Low_complexity 1 18 -19 2009 147 0 0 chr11 45745782 45746067 -103037405 - AluSx SINE Alu -27 285 1 27 0 0 26 chr11 45746067 45746086 -103037386 + AT_rich Low_complexity Low_complexity 18 37 0 2514 119 2 8 chr11 45746086 45746481 -103036991 - L1MA2 LINE L1 0 6304 5912 340 326 86 39 chr11 45747124 45747357 -103036115 - MIR SINE MIR 0 262 19 2191 121 0 3 chr11 45747359 45747665 -103035807 - AluSx SINE Alu -7 305 1 1825 168 0 13 chr11 45747665 45747974 -103035498 - AluJo SINE Alu -7 305 1 2200 108 3 0 chr11 45748251 45748548 -103034924 + AluSx SINE Alu 1 298 -14 310 244 38 30 chr11 45748586 45748717 -103034755 - L1ME4a LINE L1 -11 6110 5979 316 148 0 0 chr11 45748742 45748796 -103034676 - Alu SINE Alu -1 301 248 25 83 0 0 chr11 45748805 45748865 -103034607 + AT_rich Low_complexity Low_complexity 1 60 0 14973 176 23 15 chr11 45748996 45751047 -103032425 - L1MA4A LINE L1 -29 6976 4943 2256 109 0 0 chr11 45751047 45751340 -103032132 - AluY SINE Alu -18 293 1 14973 176 23 15 chr11 45751340 45753348 -103030124 - L1MA4A LINE L1 -2062 4943 2883 861 222 27 0 chr11 45753346 45753531 -103029941 - L1MA4A LINE L1 -6650 199 10 * 829 251 48 15 chr11 45753543 45753814 -103029658 - L1ME4a LINE L1 -294 5827 5548 21 0 0 0 chr11 45753846 45753867 -103029605 + AT_rich Low_complexity Low_complexity 1 21 0 257 306 94 0 chr11 45754228 45754313 -103029159 + MLT1L LTR MaLR 327 419 -196 2382 182 203 27 chr11 45754332 45755001 -103028471 + LTR48 LTR ERV1 1 787 0 234 171 57 138 chr11 45755013 45755066 -103028406 + MLT1L LTR MaLR 497 553 -62 2257 113 0 0 chr11 45755066 45755368 -103028104 - AluSq SINE Alu -11 302 1 234 171 57 138 chr11 45755368 45755437 -103028035 + MLT1L LTR MaLR 553 609 -6 21 36 0 0 chr11 45755592 45755620 -103027852 + AT_rich Low_complexity Low_complexity 1 28 0 679 247 45 11 chr11 45755768 45755946 -103027526 + MIR SINE MIR 79 262 0 1366 176 138 132 chr11 45755963 45756592 -103026880 - LTR27 LTR ERV1 -1 635 3 205 190 52 17 chr11 45756778 45756836 -103026636 + (CAAA)n Simple_repeat Simple_repeat 4 63 0 775 261 87 42 chr11 45757111 45757490 -103025982 - MLT1I LTR MaLR -7 402 7 215 234 0 0 chr11 45757961 45758008 -103025464 + L2 LINE L2 3266 3312 -1 316 211 173 0 chr11 45758346 45758450 -103025022 + MLT1H LTR MaLR 373 494 -55 774 205 124 81 chr11 45758456 45758524 -103024948 - MER58A DNA MER1_type -2198 222 158 3383 190 60 42 chr11 45758524 45759334 -103024138 - LTR1B LTR ERV1 0 826 2 774 205 124 81 chr11 45759334 45759475 -103023997 - MER58A DNA MER1_type -2262 158 4 269 241 0 0 chr11 45759475 45759533 -103023939 + MLT1H LTR MaLR 498 555 0 678 310 25 8 chr11 45760114 45760359 -103023113 + MIR SINE MIR 12 260 -2 909 284 78 12 chr11 45760702 45761037 -103022435 - LTR16A LTR ERVL -14 436 80 183 299 0 15 chr11 45761084 45761151 -103022321 - MIR SINE MIR -21 241 176 1630 166 12 127 chr11 45761297 45761652 -103021820 - MER93b LTR ERV1 -5 368 66 1696 46 0 0 chr11 45761652 45761849 -103021623 + AluY SINE Alu 99 295 -16 1630 166 12 127 chr11 45761849 45761909 -103021563 - MER93b LTR ERV1 -307 66 1 378 280 20 10 chr11 45762015 45762115 -103021357 - MIR SINE MIR -63 145 45 602 249 127 47 chr11 45762631 45762844 -103020628 - MIR SINE MIR -2 260 31 248 335 37 67 chr11 45763151 45763315 -103020157 + MIR SINE MIR 23 181 -81 348 276 103 35 chr11 45763497 45763541 -103019931 + L2 LINE L2 3159 3199 -114 960 199 25 15 chr11 45763541 45763742 -103019730 + MER3 DNA MER1_type 3 205 -4 348 276 103 35 chr11 45763742 45763842 -103019630 + L2 LINE L2 3199 3313 0 190 277 89 59 chr11 45764509 45764568 -103018904 - MIR SINE MIR 0 262 197 2083 133 0 13 chr11 45764568 45764868 -103018604 - AluSx SINE Alu -16 296 1 190 277 89 59 chr11 45764868 45764909 -103018563 - MIR SINE MIR -65 197 159 628 246 85 89 chr11 45764919 45765143 -103018329 - MIR SINE MIR -9 253 31 744 285 23 28 chr11 45765154 45765368 -103018104 - MIR SINE MIR -34 228 16 1874 220 70 11 chr11 45765379 45765820 -103017652 + MLT1C LTR MaLR 1 467 0 2093 136 0 22 chr11 45765858 45766175 -103017297 - AluSq SINE Alu -3 310 1 558 279 69 10 chr11 45766421 45766625 -103016847 + MIR SINE MIR 47 262 0 412 270 11 0 chr11 45767225 45767314 -103016158 + MER5A DNA MER1_type 16 105 -84 2041 152 0 0 chr11 45767552 45767849 -103015623 - AluSx SINE Alu -15 297 1 573 314 33 41 chr11 45768023 45768268 -103015204 - MIR SINE MIR -8 254 12 1261 236 17 14 chr11 45768436 45768732 -103014740 - MLT1C LTR MaLR 0 467 171 283 64 0 106 chr11 45768770 45768817 -103014655 + MLT1C LTR MaLR 101 142 -325 2219 90 75 12 chr11 45768871 45769192 -103014280 + L1PB2 LINE L1 5808 6148 -3 447 242 0 0 chr11 45769649 45769740 -103013732 - Tigger5 DNA MER2_type -3 2320 2230 365 284 0 0 chr11 45769744 45769832 -103013640 + Tigger5 DNA MER2_type 1 88 -2235 287 206 15 15 chr11 45769854 45769922 -103013550 - Tigger5 DNA MER2_type -5 2318 2251 286 236 0 0 chr11 45769891 45769946 -103013526 - Tigger5 DNA MER2_type -2268 55 1 * 9260 57 3 4 chr11 45770378 45771450 -103012022 + MER11C LTR ERVK 1 1071 0 822 148 44 50 chr11 45771779 45771961 -103011511 - MLT1C LTR MaLR -286 181 1 574 127 0 13 chr11 45771966 45772045 -103011427 - AluJ/FLAM SINE Alu -228 84 7 521 277 179 16 chr11 45772073 45772257 -103011215 + MIR SINE MIR 8 221 -41 226 262 189 16 chr11 45772258 45772380 -103011092 + LTR16A1 LTR ERVL 1 143 -314 537 214 172 0 chr11 45772420 45772565 -103010907 + LTR16A1 LTR ERVL 288 457 0 880 113 0 15 chr11 45772596 45772759 -103010713 + FLAM_C SINE Alu 1 161 0 2902 93 5 8 chr11 45772808 45773184 -103010288 - THE1C LTR MaLR 0 375 1 320 0 0 24 chr11 45773622 45773663 -103009809 + (CAT)n Simple_repeat Simple_repeat 3 42 0 254 261 152 11 chr11 45773775 45773867 -103009605 - MIR SINE MIR -119 143 39 411 73 0 0 chr11 45775138 45775193 -103008279 + (TA)n Simple_repeat Simple_repeat 2 56 0 1510 162 88 0 chr11 45775193 45775337 -103008135 - AluJo SINE Alu -9 303 173 525 58 0 0 chr11 45775337 45775406 -103008066 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 1510 162 88 0 chr11 45775406 45775536 -103007936 - AluJo SINE Alu -139 173 1 2257 107 0 22 chr11 45777963 45778281 -103005191 - AluSq SINE Alu -2 311 1 285 222 153 0 chr11 45778331 45778403 -103005069 - MLT1K LTR MaLR -1 587 505 669 295 19 14 chr11 45778710 45778917 -103004555 - MIR SINE MIR -54 208 1 1615 189 7 14 chr11 45779136 45779433 -103004039 - AluJb SINE Alu -15 297 3 490 214 50 14 chr11 45779466 45779613 -103003859 - MIR SINE MIR -62 146 21 1092 86 23 6 chr11 45780296 45780470 -103003002 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 294 179 0 0 chr11 45780474 45780530 -103002942 + CT-rich Low_complexity Low_complexity 3 58 0 1999 142 3 7 chr11 45780552 45780847 -103002625 - AluSx SINE Alu -18 294 1 204 40 0 0 chr11 45784151 45784176 -102999296 + (TG)n Simple_repeat Simple_repeat 2 26 0 2521 60 0 0 chr11 45784234 45784535 -102998937 + AluY SINE Alu 1 301 -10 232 270 48 0 chr11 45784611 45784674 -102998798 - L1ME LINE L1 -369 5801 5736 486 333 6 19 chr11 45784769 45784928 -102998544 - MIR3 SINE MIR -16 192 36 398 342 20 64 chr11 45785038 45785240 -102998232 + MER91A DNA MER1_type 3 195 -1 1739 152 0 37 chr11 45785810 45786106 -102997366 - AluJo SINE Alu -16 296 12 2192 165 11 11 chr11 45786334 45786709 -102996763 - L1MC1 LINE L1 -23 6310 5936 1284 86 5 41 chr11 45786686 45786883 -102996589 - L1PA8A LINE L1 0 6131 5942 * 412 161 43 0 chr11 45786902 45786995 -102996477 - L1MB3 LINE L1 0 6183 6087 4670 139 10 19 chr11 45786998 45787539 -102995933 - L1MA4 LINE L1 -278 6022 5492 1965 145 0 17 chr11 45787539 45787835 -102995637 - AluSx SINE Alu -21 291 1 4670 139 10 19 chr11 45787835 45788210 -102995262 - L1MA4 LINE L1 -808 5492 5115 1886 152 61 0 chr11 45788206 45788535 -102994937 - L1MC1 LINE L1 -353 5980 5632 * 187 239 22 0 chr11 45789138 45789184 -102994288 + L2 LINE L2 3221 3267 -5 9364 47 11 2 chr11 45789280 45791141 -102992331 - L1PA6 LINE L1 -2 6152 4261 374 234 0 6 chr11 45791686 45791857 -102991615 + GA-rich Low_complexity Low_complexity 1 170 0 204 40 0 0 chr11 45792297 45792322 -102991150 + (A)n Simple_repeat Simple_repeat 1 25 0 2111 98 7 17 chr11 45793516 45793811 -102989661 - AluY SINE Alu -5 306 15 555 303 121 66 chr11 45793811 45794343 -102989129 - L2 LINE L2 -6 3266 2715 608 285 118 64 chr11 45794895 45795334 -102988138 - MLT1J LTR MaLR -48 463 1 801 257 11 6 chr11 45795339 45795518 -102987954 + MLT1H LTR MaLR 1 180 -369 273 272 93 25 chr11 45796714 45796876 -102986596 - L1ME4a LINE L1 -72 6049 5877 2173 115 20 0 chr11 45796916 45797220 -102986252 - AluSx SINE Alu -2 310 1 254 251 80 0 chr11 45797780 45797875 -102985597 + MIR SINE MIR 61 166 -63 790 197 0 0 chr11 45798405 45798532 -102984940 - FLAM_A SINE Alu -2 131 5 1137 203 29 0 chr11 45798781 45798988 -102984484 - MER20 DNA MER1_type -6 213 1 956 218 121 97 chr11 45799726 45800056 -102983416 - MLT1H LTR MaLR -12 537 200 451 285 35 38 chr11 45800586 45800828 -102982644 + MLT1H LTR MaLR 83 289 -120 370 301 78 20 chr11 45801979 45802132 -102981340 - MIR3 SINE MIR -33 175 14 1091 301 59 28 chr11 45802903 45803362 -102980110 - MLT1H LTR MaLR -54 495 23 2125 143 0 6 chr11 45803824 45804138 -102979334 - AluSx SINE Alu 0 312 1 1772 166 35 3 chr11 45804167 45804456 -102979016 + AluJo SINE Alu 2 299 -13 851 126 7 7 chr11 45804558 45804701 -102978771 - Charlie5 DNA MER1_type -27 2585 2443 1144 139 29 34 chr11 45805754 45805962 -102977510 - Tigger1 DNA MER2_type -5 2413 2207 2202 130 16 21 chr11 45805962 45806338 -102977134 + L1MA4 LINE L1 5325 5698 -605 865 164 0 0 chr11 45806344 45806478 -102976994 + Tigger1 DNA MER2_type 2280 2413 -5 15146 113 19 10 chr11 45806527 45806562 -102976910 - Tigger1 DNA MER2_type -155 2263 2230 3432 129 48 17 chr11 45806562 45807145 -102976327 + L1MA4 LINE L1 5693 6293 -7 15146 113 19 10 chr11 45807145 45809353 -102974119 - Tigger1 DNA MER2_type -188 2230 1 201 121 0 0 chr11 45809875 45809908 -102973564 + (CAA)n Simple_repeat Simple_repeat 1 33 0 185 348 45 36 chr11 45810134 45810246 -102973226 - MIR3 SINE MIR -81 127 15 2187 100 0 23 chr11 45811841 45812142 -102971330 - AluSc SINE Alu -15 294 1 348 232 29 65 chr11 45812243 45812351 -102971121 + LTR67 LTR ERVL 410 512 -45 292 284 55 28 chr11 45812351 45812460 -102971012 - LTR67 LTR ERVL -3 554 443 189 107 0 0 chr11 45813016 45813044 -102970428 + (ATG)n Simple_repeat Simple_repeat 2 29 0 310 340 87 24 chr11 45813051 45813257 -102970215 - MIR SINE MIR -13 249 31 370 348 42 51 chr11 45814014 45814347 -102969125 + LTR16C LTR ERVL 160 489 -2 262 351 18 26 chr11 45814489 45814603 -102968869 - MIR3 SINE MIR -81 127 15 2166 58 101 0 chr11 45814782 45815060 -102968412 - AluY SINE Alu -2 309 4 991 210 45 0 chr11 45815235 45815435 -102968037 - MIR SINE MIR -51 211 3 544 248 0 0 chr11 45815983 45816096 -102967376 - L1PA13 LINE L1 -6195 592 480 4653 132 16 1 chr11 45816096 45816772 -102966700 + L1PA15 LINE L1 5478 6163 -2 1559 246 38 20 chr11 45816849 45817300 -102966172 + L1MA9 LINE L1 5826 6284 -28 1708 167 0 38 chr11 45817302 45817595 -102965877 - AluJb SINE Alu -30 282 1 21 0 0 0 chr11 45817597 45817618 -102965854 + AT_rich Low_complexity Low_complexity 1 21 0 298 287 33 33 chr11 45817634 45817816 -102965656 - L1MC/D LINE L1 -583 5579 5394 506 318 29 34 chr11 45818232 45818471 -102965001 - MIR SINE MIR -12 250 13 552 302 37 29 chr11 45818750 45818995 -102964477 + MIR SINE MIR 1 247 -15 1765 271 59 14 chr11 45821429 45821938 -102961534 - MLT1H LTR MaLR 0 549 18 389 342 31 35 chr11 45822952 45823180 -102960292 - MIR SINE MIR -16 246 20 1995 126 0 30 chr11 45823620 45823921 -102959551 - AluSc SINE Alu -17 292 1 186 43 0 0 chr11 45824023 45824046 -102959426 + (TTA)n Simple_repeat Simple_repeat 2 24 0 634 316 72 0 chr11 45824371 45824608 -102958864 - L2 LINE L2 -941 2373 2120 2907 104 0 0 chr11 45825284 45825648 -102957824 + THE1B LTR MaLR 1 364 0 3086 182 26 9 chr11 45825789 45826328 -102957144 + MER44D DNA MER2_type 1 603 -2 1029 241 66 30 chr11 45826365 45826697 -102956775 - L2 LINE L2 0 3313 2970 293 82 20 0 chr11 45827025 45827074 -102956398 + (GA)n Simple_repeat Simple_repeat 2 51 0 456 314 0 0 chr11 45827292 45827410 -102956062 + MIR SINE MIR 16 133 -129 261 180 0 0 chr11 45827423 45827473 -102955999 + (CAT)n Simple_repeat Simple_repeat 3 52 0 226 204 0 0 chr11 45828146 45828195 -102955277 - L1ME4a LINE L1 -1 6120 6072 259 318 129 0 chr11 45828200 45828285 -102955187 - MIR SINE MIR -156 106 11 436 299 59 21 chr11 45829409 45829596 -102953876 + MIR SINE MIR 20 213 -49 774 238 70 20 chr11 45829712 45829744 -102953728 + MER46C DNA MER2_type 83 112 -226 2953 83 11 11 chr11 45829744 45830119 -102953353 - THE1C LTR MaLR 0 375 1 774 238 70 20 chr11 45830119 45830330 -102953142 + MER46C DNA MER2_type 112 338 0 396 317 128 41 chr11 45832000 45832243 -102951229 + L2 LINE L2 2653 2916 -398 201 299 75 19 chr11 45832234 45832314 -102951158 + L2 LINE L2 3201 3290 -23 * 2116 98 11 0 chr11 45832314 45832589 -102950883 - AluSx SINE Alu -18 294 17 201 299 75 19 chr11 45832589 45832615 -102950857 + L2 LINE L2 3290 3313 0 25593 142 32 11 chr11 45832676 45838279 -102945193 + L1PA8A LINE L1 14 5802 -644 * 32482 61 1 1 chr11 45838277 45842330 -102941142 + L1P LINE L1 1 4054 -2092 6119 120 10 0 chr11 45842437 45843313 -102940159 + HSMAR2 DNA Mariner 417 1301 -1 300 229 183 23 chr11 45844096 45844227 -102939245 - MIR SINE MIR -7 255 104 687 210 7 21 chr11 45844343 45844486 -102938986 + MLT1J2 LTR MaLR 21 161 -289 2060 124 85 25 chr11 45845632 45845986 -102937486 - THE1C LTR MaLR 0 375 1 183 346 158 23 chr11 45846162 45846295 -102937177 - L2 LINE L2 0 3272 3122 245 313 53 67 chr11 45846430 45846580 -102936892 - L2 LINE L2 -222 3050 2903 27 29 0 0 chr11 45846944 45846978 -102936494 + AT_rich Low_complexity Low_complexity 1 34 0 230 298 172 7 chr11 45847385 45847536 -102935936 - MIR SINE MIR -1 261 86 185 227 0 23 chr11 45847638 45847682 -102935790 + L2 LINE L2 3230 3272 0 299 294 35 0 chr11 45848624 45848709 -102934763 - MIR SINE MIR -123 139 52 353 329 92 19 chr11 45848764 45848974 -102934498 + MIR SINE MIR 37 260 -2 346 236 223 34 chr11 45849095 45849243 -102934229 - MER5B DNA MER1_type -2 176 1 32 0 0 0 chr11 45849740 45849772 -102933700 + AT_rich Low_complexity Low_complexity 1 32 0 610 295 122 53 chr11 45849818 45850451 -102933021 + L2 LINE L2 2570 3264 -49 2513 99 51 43 chr11 45850451 45850823 -102932649 + THE1C LTR MaLR 1 375 0 610 295 122 53 chr11 45850823 45850877 -102932595 + L2 LINE L2 3264 3313 0 568 286 134 23 chr11 45850995 45851257 -102932215 - L2 LINE L2 0 3313 3023 699 281 36 22 chr11 45852598 45852822 -102930650 - MIR SINE MIR -16 246 20 1928 154 123 10 chr11 45852933 45853316 -102930156 + MSTA LTR MaLR 3 428 0 718 259 38 42 chr11 45853686 45853925 -102929547 + MIR SINE MIR 4 241 -21 587 314 172 15 chr11 45853975 45854376 -102929096 - MLT1K LTR MaLR -31 557 94 789 281 35 13 chr11 45855153 45855384 -102928088 - MIR SINE MIR 0 262 27 349 350 101 0 chr11 45855479 45855696 -102927776 + MIR SINE MIR 18 256 -6 1824 172 14 116 chr11 45855701 45856264 -102927208 + L1MA10 LINE L1 5828 6333 -1 2451 146 2 19 chr11 45856497 45856923 -102926549 - L1MD1 LINE L1 0 6242 5824 518 154 114 8 chr11 45856938 45857061 -102926411 - L1MA9 LINE L1 -4 6308 6173 301 118 0 0 chr11 45857072 45857123 -102926349 - L1MD1 LINE L1 -414 5828 5778 196 313 39 78 chr11 45857876 45858004 -102925468 + L2 LINE L2 3179 3301 -12 201 74 0 0 chr11 45858101 45858128 -102925344 + (T)n Simple_repeat Simple_repeat 1 27 0 183 366 49 0 chr11 45858183 45858265 -102925207 + MIR SINE MIR 18 103 -105 201 332 224 20 chr11 45859066 45859262 -102924210 - MIR SINE MIR -7 255 20 1363 221 65 22 chr11 45860550 45860917 -102922555 + MSTD LTR MaLR 3 385 -11 2856 237 10 18 chr11 45860926 45861655 -102921817 + MSTD-int LTR MaLR 2 724 -1011 1275 58 0 0 chr11 45861757 45861912 -102921560 + AluY SINE Alu 148 302 -9 4943 101 25 4 chr11 45862100 45862832 -102920640 + L1PA15 LINE L1 5417 6163 -2 612 294 112 47 chr11 45862844 45862976 -102920496 + L1ME LINE L1 2844 2966 -3180 1661 217 52 49 chr11 45862976 45863442 -102920030 - MLT1C LTR MaLR 0 467 1 612 294 112 47 chr11 45863442 45863775 -102919697 + L1ME LINE L1 2966 3339 -2807 1148 250 51 0 chr11 45863875 45864167 -102919305 + MER58B DNA MER1_type 19 325 -16 546 362 64 25 chr11 45864188 45864624 -102918848 + L1ME LINE L1 3383 3835 -2311 481 330 48 48 chr11 45864706 45865063 -102918409 + L1ME LINE L1 4059 4415 -1731 426 333 89 17 chr11 45865244 45865768 -102917704 + L1ME LINE L1 5255 5810 -311 821 230 5 60 chr11 45866482 45866606 -102916866 - MER5A DNA MER1_type 0 189 79 2065 77 0 4 chr11 45866606 45866867 -102916605 - AluY SINE Alu -11 300 41 821 230 5 60 chr11 45866867 45866942 -102916530 - MER5A DNA MER1_type -110 79 1 186 318 0 0 chr11 45867057 45867101 -102916371 - MIR3 SINE MIR -54 154 111 423 241 83 23 chr11 45867520 45867594 -102915878 - MIR SINE MIR -34 228 160 1550 126 0 13 chr11 45867594 45867833 -102915639 + MER46A DNA MER2_type 1 236 0 423 241 83 23 chr11 45867833 45867891 -102915581 - MIR SINE MIR -102 160 88 305 328 15 30 chr11 45867995 45868193 -102915279 - MLT2F LTR ERVL -28 635 441 740 201 26 3 chr11 45868315 45868506 -102914966 - MLT2E LTR ERVL -441 222 20 41513 44 4 2 chr11 45868584 45874726 -102908746 + L1PA3 LINE L1 1 6152 -3 1477 167 26 32 chr11 45874731 45875078 -102908394 - L1MA9 LINE L1 -30 6282 5938 226 307 109 62 chr11 45875079 45875271 -102908201 - MIR SINE MIR -60 202 2 2214 119 33 30 chr11 45876227 45876589 -102906883 - THE1B LTR MaLR -1 363 1 318 237 42 42 chr11 45876590 45876708 -102906764 - LTR16C LTR ERVL -9 482 365 937 250 5 15 chr11 45877309 45877513 -102905959 + MIR SINE MIR 12 213 -49 201 182 45 0 chr11 45877521 45877565 -102905907 + (CA)n Simple_repeat Simple_repeat 1 46 0 419 301 196 15 chr11 45877782 45877981 -102905491 + MIR SINE MIR 28 262 0 315 254 102 17 chr11 45878329 45878447 -102905025 - MIR SINE MIR -111 151 24 277 263 38 25 chr11 45878539 45878619 -102904853 - MIR SINE MIR -18 244 164 514 310 17 11 chr11 45879232 45879406 -102904066 - MIR SINE MIR -70 192 18 342 226 137 134 chr11 45879422 45879736 -102903736 - MLT1H LTR MaLR -4 545 231 456 173 19 19 chr11 45879769 45879939 -102903533 - AluY SINE Alu 0 376 207 349 234 13 0 chr11 45879942 45880019 -102903453 - MLT1H LTR MaLR -392 157 80 952 249 47 12 chr11 45880751 45881004 -102902468 + MIR SINE MIR 1 262 0 194 340 128 26 chr11 45881041 45881197 -102902275 - MER5A DNA MER1_type 0 189 18 359 322 128 6 chr11 45881452 45881632 -102901840 - MIR SINE MIR 0 262 61 700 297 81 26 chr11 45881717 45882064 -102901408 + MLT1J LTR MaLR 3 368 -143 4851 176 13 32 chr11 45882151 45882578 -102900894 + L1 LINE L1 4189 4623 -1523 2214 133 123 5 chr11 45882578 45882961 -102900511 + MSTA LTR MaLR 1 428 0 9246 142 16 34 chr11 45882963 45884565 -102898907 + MSTA-int LTR MaLR 3 1576 -4 1858 131 164 50 chr11 45884570 45884953 -102898519 + MSTA LTR MaLR 2 428 0 4851 176 13 32 chr11 45884953 45885658 -102897814 + L1 LINE L1 4628 5308 -838 1917 165 55 19 chr11 45885658 45886136 -102897336 + Tigger2 DNA MER2_type 1 2715 -3 458 160 0 11 chr11 45886138 45886232 -102897240 + L1M LINE L1 5307 5399 -901 12378 39 1 5 chr11 45886605 45888878 -102894594 + L1PA4 LINE L1 3877 6148 -7 902 329 96 36 chr11 45888959 45890001 -102893471 + L2 LINE L2 1986 3090 -182 234 62 0 0 chr11 45890063 45890095 -102893377 + (CA)n Simple_repeat Simple_repeat 2 33 0 3403 77 0 26 chr11 45890104 45890511 -102892961 + MLT2A1 LTR ERVL 1 396 -48 399 21 0 0 chr11 45890511 45890559 -102892913 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 3403 77 0 26 chr11 45890559 45890607 -102892865 + MLT2A1 LTR ERVL 396 444 0 327 25 0 0 chr11 45890650 45890690 -102892782 + (TG)n Simple_repeat Simple_repeat 2 41 0 7159 29 1 2 chr11 45892223 45893122 -102890350 - L1PA4 LINE L1 -4 6151 5254 326 291 94 83 chr11 45893415 45893789 -102889683 + MLT1J LTR MaLR 105 482 -29 476 274 107 65 chr11 45893865 45894266 -102889206 + MLT1L LTR MaLR 140 557 -58 973 201 121 0 chr11 45894279 45894478 -102888994 - MER58A DNA MER1_type -1 223 1 1751 189 0 3 chr11 45894614 45894910 -102888562 + AluJb SINE Alu 1 295 -17 26 30 0 0 chr11 45895125 45895158 -102888314 + AT_rich Low_complexity Low_complexity 1 33 0 234 305 21 42 chr11 45896052 45896147 -102887325 - MIR SINE MIR -79 129 37 263 141 70 0 chr11 45896458 45896529 -102886943 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 274 264 33 0 chr11 45896545 45896666 -102886806 + L1ME4a LINE L1 5995 6119 -2 553 287 108 39 chr11 45897644 45898006 -102885466 + L2 LINE L2 2761 3148 -165 759 69 0 0 chr11 45898006 45898108 -102885364 - AluY SINE Alu -9 302 201 279 0 0 0 chr11 45898111 45898142 -102885330 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2674 41 0 0 chr11 45898143 45898462 -102885010 - L1PA3 LINE L1 -19 6136 5818 1731 35 0 0 chr11 45898462 45898660 -102884812 - AluY SINE Alu -113 198 1 204 253 313 20 chr11 45898701 45898800 -102884672 + L2 LINE L2 3184 3311 -2 2345 116 3 0 chr11 45899189 45899500 -102883972 + AluSx SINE Alu 1 312 0 402 240 0 0 chr11 45900193 45900293 -102883179 - MER103 DNA DNA -12 154 55 439 308 68 39 chr11 45900368 45900602 -102882870 + MIR SINE MIR 6 246 -16 1737 145 32 35 chr11 45901906 45902029 -102881443 - L1PA16 LINE L1 -9 6157 6035 2145 122 3 10 chr11 45902029 45902332 -102881140 - AluSx SINE Alu -9 303 3 1737 145 32 35 chr11 45902332 45902552 -102880920 - L1PA16 LINE L1 -131 6035 5815 521 255 7 7 chr11 45902429 45902578 -102880894 - L1MA4 LINE L1 -362 5938 5790 565 307 50 34 chr11 45902648 45902886 -102880586 - MIR SINE MIR -1 261 20 716 315 67 4 chr11 45902958 45903196 -102880276 - MIR SINE MIR -3 259 7 1215 150 52 43 chr11 45903269 45903502 -102879970 - MLT1B LTR MaLR -2 388 154 180 0 0 0 chr11 45905743 45905763 -102877709 + (TTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr11 45905788 45905809 -102877663 + (TG)n Simple_repeat Simple_repeat 2 22 0 7194 65 6 0 chr11 45905809 45906772 -102876700 - L1PA8 LINE L1 -23 6149 5182 304 276 13 0 chr11 45906972 45907048 -102876424 - L2 LINE L2 -5 3267 3191 1081 219 56 14 chr11 45907160 45907375 -102876097 + MER58A DNA MER1_type 1 224 0 267 171 53 92 chr11 45907558 45907634 -102875838 + L2 LINE L2 3232 3304 -9 267 54 0 0 chr11 45908209 45908246 -102875226 + (TG)n Simple_repeat Simple_repeat 2 38 0 2742 80 13 40 chr11 45908776 45909150 -102874322 - THE1B LTR MaLR 0 364 1 5355 158 21 11 chr11 45909660 45910567 -102872905 - MER49 LTR ERV1 0 923 8 389 273 180 0 chr11 45910569 45910697 -102872775 - MER5A DNA MER1_type -30 159 9 1066 207 0 11 chr11 45910715 45910903 -102872569 - MER5A DNA MER1_type -2 187 2 488 279 76 0 chr11 45910914 45911072 -102872400 - MER5B DNA MER1_type -2 176 7 288 256 78 22 chr11 45911839 45911929 -102871543 - MIR3 SINE MIR -19 189 95 526 289 159 0 chr11 45912062 45912263 -102871209 - MIR SINE MIR -21 241 9 2457 142 4 85 chr11 45912372 45912845 -102870627 + MER65A LTR ERV1 11 445 0 1459 215 81 9 chr11 45912932 45913253 -102870219 - MER2 DNA MER2_type 0 344 1 282 195 0 0 chr11 45913288 45913329 -102870143 - MER2 DNA MER2_type -304 41 1 240 309 0 12 chr11 45913459 45913540 -102869932 - MER94 DNA DNA -54 80 1 469 349 90 22 chr11 45913711 45914111 -102869361 - MLT1K LTR MaLR -53 562 99 391 265 71 41 chr11 45914338 45914534 -102868938 + MIR SINE MIR 34 235 -27 24 32 0 0 chr11 45915513 45915544 -102867928 + AT_rich Low_complexity Low_complexity 1 31 0 254 269 74 47 chr11 45915544 45915693 -102867779 - L1ME4a LINE L1 -5 6116 5964 514 321 36 0 chr11 45915785 45915981 -102867491 - L1ME4a LINE L1 -297 5824 5622 1885 131 47 20 chr11 45916099 45916396 -102867076 + AluSx SINE Alu 1 305 -7 2187 136 74 15 chr11 45917562 45917901 -102865571 + THE1B LTR MaLR 1 359 -5 206 314 161 24 chr11 45918018 45918142 -102865330 - L2 LINE L2 0 3272 3132 3304 120 119 18 chr11 45918210 45918783 -102864689 + LTR24C LTR ERV1 5 635 0 201 320 88 48 chr11 45919497 45919622 -102863850 + L2 LINE L2 2904 3033 -239 303 296 20 91 chr11 45919658 45919857 -102863615 - L2 LINE L2 0 3313 3129 2271 160 28 23 chr11 45919979 45920367 -102863105 + MLT1B LTR MaLR 1 390 0 270 258 151 19 chr11 45920368 45920527 -102862945 + L2 LINE L2 3127 3306 -7 2031 140 26 5 chr11 45921671 45922023 -102861449 + LTR7 LTR ERV1 48 450 0 406 286 128 15 chr11 45922425 45922558 -102860914 - MIR SINE MIR -112 150 3 509 244 153 34 chr11 45922838 45923014 -102860458 + MIR SINE MIR 35 231 -31 8410 118 19 12 chr11 45923089 45924755 -102858717 - L1P4 LINE L1 -497 5671 3994 412 184 0 0 chr11 45924774 45924850 -102858622 + L1PA16 LINE L1 6090 6165 -1 482 333 20 10 chr11 45925960 45926155 -102857317 + MER117 DNA MER1_type 1 197 0 585 168 72 16 chr11 45926212 45926337 -102857135 - L1MA7 LINE L1 -1 6290 6159 870 172 20 76 chr11 45926720 45926918 -102856554 + MER5A DNA MER1_type 1 187 -2 1957 204 8 102 chr11 45927839 45928358 -102855114 + MER70A LTR ERVL 1 470 -2 229 274 159 18 chr11 45930778 45930891 -102852581 + MLT1I LTR MaLR 16 144 -265 241 145 116 43 chr11 45931082 45931151 -102852321 + MLT1G1 LTR MaLR 505 578 -17 3668 82 9 0 chr11 45931189 45931638 -102851834 + MLT2A2 LTR ERVL 1 453 0 194 344 106 13 chr11 45931646 45931797 -102851675 + MIR SINE MIR 77 241 -21 1791 179 60 31 chr11 45931814 45932165 -102851307 + MLT1A1 LTR MaLR 1 361 -4 375 259 27 136 chr11 45932181 45932475 -102850997 - MIR SINE MIR 0 262 1 201 239 0 22 chr11 45933571 45933617 -102849855 + GA-rich Low_complexity Low_complexity 1 45 0 5121 128 52 14 chr11 45933901 45935216 -102848256 - Tigger1 DNA MER2_type -5 2413 953 2210 110 3 3 chr11 45935216 45935525 -102847947 + AluSx SINE Alu 1 309 -3 5121 128 52 14 chr11 45935525 45935879 -102847593 - Tigger1 DNA MER2_type -1465 953 614 294 222 49 124 chr11 45936643 45936828 -102846644 - L1MC4a LINE L1 -215 5906 5736 315 145 48 0 chr11 45937155 45937217 -102846255 + MIR SINE MIR 193 257 -5 396 335 71 27 chr11 45937227 45937523 -102845949 + L3 LINE CR1 118 426 -1151 1831 301 71 61 chr11 45938149 45938743 -102844729 - MER4A LTR ERV1 0 600 1 225 253 263 11 chr11 45939136 45939231 -102844241 + L2 LINE L2 3143 3261 -11 608 325 108 38 chr11 45939241 45939394 -102844078 + L3 LINE CR1 483 624 -953 4427 101 0 0 chr11 45939394 45939948 -102843524 + MER41A LTR ERV1 1 554 0 608 325 108 38 chr11 45939948 45940376 -102843096 + L3 LINE CR1 624 1105 -472 958 211 17 50 chr11 45940429 45940661 -102842811 - L1MA4 LINE L1 -1 6299 6061 222 118 0 0 chr11 45940661 45940695 -102842777 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1993 124 14 0 chr11 45940695 45940977 -102842495 - AluSx SINE Alu -24 288 3 958 211 17 50 chr11 45940977 45941041 -102842431 - L1MA4 LINE L1 -237 6063 6012 388 324 78 11 chr11 45941165 45941344 -102842128 + L3 LINE CR1 1328 1518 -59 244 281 12 12 chr11 45943021 45943103 -102840369 + LTR58 LTR ERV1 350 431 -248 1627 54 54 54 chr11 45943952 45944192 -102839280 + AluY SINE Alu 69 308 -3 415 232 64 24 chr11 45944304 45944429 -102839043 - MLT1J2 LTR MaLR -277 173 44 182 270 240 0 chr11 45944666 45944766 -102838706 - MIR SINE MIR -73 189 66 333 68 0 0 chr11 45945846 45945890 -102837582 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 48 0 0 chr11 45945890 45945932 -102837540 + AT_rich Low_complexity Low_complexity 1 42 0 2729 104 16 19 chr11 45946388 45946764 -102836708 - THE1C LTR MaLR 0 375 1 370 325 142 30 chr11 45946796 45946965 -102836507 + MIR3 SINE MIR 21 208 0 2897 36 0 0 chr11 45947054 45947387 -102836085 - L1PA4 LINE L1 -1920 4226 3894 * 7575 29 1 0 chr11 45947384 45948271 -102835201 + L1PA4 LINE L1 4229 5116 -1030 2560 26 13 3 chr11 45948265 45948567 -102834905 - L1PA2 LINE L1 -515 5640 5336 * 4730 16 0 0 chr11 45948567 45949072 -102834400 + L1PA2 LINE L1 5647 6153 -2 7783 38 5 0 chr11 45949086 45950138 -102833334 + L1PA4 LINE L1 5098 6153 -2 396 292 115 73 chr11 45951193 45951696 -102831776 + L1M2 LINE L1 529 1050 -5799 349 275 0 0 chr11 45953235 45953315 -102830157 - L2 LINE L2 0 3313 3234 302 226 54 21 chr11 45953470 45953563 -102829909 + MLT1L LTR MaLR 143 238 -377 2274 199 24 13 chr11 45953656 45954123 -102829349 - L1M2 LINE L1 -6230 619 148 360 273 211 12 chr11 45954734 45954895 -102828577 - L2 LINE L2 -21 3292 3100 2218 303 47 22 chr11 45954963 45955810 -102827662 - L2 LINE L2 -369 2945 2078 230 122 24 0 chr11 45955941 45955982 -102827490 + L2 LINE L2 3270 3311 -2 312 276 82 0 chr11 45957579 45957677 -102825795 + MLT1J2 LTR MaLR 343 448 -2 222 136 0 0 chr11 45957919 45957963 -102825509 + (TG)n Simple_repeat Simple_repeat 2 45 0 648 163 0 20 chr11 45958018 45958165 -102825307 + CT-rich Low_complexity Low_complexity 4 147 0 288 330 28 9 chr11 45958687 45958793 -102824679 - MIR SINE MIR -61 147 40 385 248 21 41 chr11 45958913 45959058 -102824414 + MLT1J1 LTR MaLR 295 436 -10 537 309 129 4 chr11 45959229 45959462 -102824010 + MLT1K LTR MaLR 322 583 -5 191 408 27 27 chr11 45960114 45960337 -102823135 + L2 LINE L2 2831 3053 -219 309 294 65 0 chr11 45960519 45960611 -102822861 - MIR SINE MIR -163 99 2 249 296 56 64 chr11 45960662 45960787 -102822685 + L2 LINE L2 3149 3272 0 198 325 72 12 chr11 45961599 45961682 -102821790 - MIR3 SINE MIR -24 184 97 381 284 60 8 chr11 45962183 45962317 -102821155 - MIR SINE MIR -49 213 73 262 266 31 0 chr11 45962490 45962554 -102820918 + MIR SINE MIR 189 254 -8 769 293 9 4 chr11 45963287 45963512 -102819960 + MIR SINE MIR 3 228 -34 462 225 0 0 chr11 45963729 45963818 -102819654 + MER81 DNA DNA 1 89 -25 707 242 75 83 chr11 45963928 45964587 -102818885 - L1MC5 LINE L1 -890 7071 6414 26 30 0 0 chr11 45964948 45964981 -102818491 + AT_rich Low_complexity Low_complexity 1 33 0 2189 103 14 0 chr11 45965293 45965584 -102817888 - AluY SINE Alu -16 295 1 543 287 61 0 chr11 45965949 45966130 -102817342 - HAL1 LINE L1 -994 1513 1322 254 243 53 130 chr11 45966380 45966549 -102816923 - HAL1 LINE L1 -2341 166 11 778 221 5 19 chr11 45967625 45967833 -102815639 - L1PA13 LINE L1 -560 5603 5399 3793 115 2 5 chr11 45967833 45968407 -102815065 + L1PA13 LINE L1 5592 6163 0 691 238 130 13 chr11 45968448 45968679 -102814793 - MIR SINE MIR 0 262 5 305 368 23 15 chr11 45969058 45969191 -102814281 + MIR3 SINE MIR 75 208 0 191 330 57 47 chr11 45969639 45969745 -102813727 - MIR SINE MIR -109 153 47 2626 91 8 0 chr11 45969954 45970306 -102813166 + THE1A LTR MaLR 1 355 0 8708 111 5 3 chr11 45970306 45971599 -102811873 + THE1A-int LTR MaLR 1 1295 -285 1602 94 9 0 chr11 45971599 45971832 -102811640 + THE1A LTR MaLR 121 355 0 1154 228 48 91 chr11 45972169 45972362 -102811110 + L2 LINE L2 2175 2375 -939 510 239 9 0 chr11 45972362 45972475 -102810997 + MER81 DNA DNA 1 114 0 450 0 0 0 chr11 45972475 45972525 -102810947 + (CA)n Simple_repeat Simple_repeat 2 51 0 1154 228 48 91 chr11 45972525 45972724 -102810748 + L2 LINE L2 2373 2551 -763 314 296 115 45 chr11 45972722 45972965 -102810507 + L2 LINE L2 3050 3309 -4 * 180 262 0 0 chr11 45974479 45974521 -102808951 - L2 LINE L2 -14 3299 3258 1170 273 128 38 chr11 45975249 45975863 -102807609 + L2 LINE L2 2618 3297 -16 211 200 0 44 chr11 45975830 45975875 -102807597 + MIR SINE MIR 220 262 0 * 642 288 106 25 chr11 45976103 45976339 -102807133 - MIR SINE MIR 0 262 8 579 213 12 41 chr11 45976339 45976508 -102806964 - MER106B DNA MER1_type 0 1059 896 254 315 154 15 chr11 45976634 45976764 -102806708 + L2 LINE L2 3118 3265 -7 699 269 50 50 chr11 45977325 45977682 -102805790 + LTR33 LTR ERVL 1 357 -164 2296 226 5 51 chr11 45977684 45978268 -102805204 + MER74A LTR ERVL 1 557 -1 256 236 19 28 chr11 45978282 45978388 -102805084 + LTR33 LTR ERVL 413 517 -4 256 231 46 0 chr11 45978514 45978579 -102804893 + L2 LINE L2 3232 3299 -14 279 360 154 0 chr11 45978660 45978796 -102804676 - MIR3 SINE MIR -11 197 41 710 307 19 5 chr11 45978868 45979080 -102804392 - MIR SINE MIR -32 230 16 1813 126 29 26 chr11 45980330 45980680 -102802792 + L1MC2 LINE L1 5985 6335 -9 386 220 55 9 chr11 45980836 45980945 -102802527 - MIR SINE MIR 0 262 149 221 218 18 18 chr11 45980982 45981037 -102802435 - L2 LINE L2 -37 3276 3222 194 395 58 0 chr11 45981035 45981121 -102802351 - MIR SINE MIR -157 105 15 * 434 294 0 49 chr11 45981124 45981267 -102802205 + MIR SINE MIR 67 202 -60 1364 227 131 52 chr11 45981512 45981692 -102801780 + MLT1E LTR MaLR 3 167 -426 2304 101 3 0 chr11 45981692 45981989 -102801483 - AluY SINE Alu -13 298 1 1364 227 131 52 chr11 45981989 45982351 -102801121 + MLT1E LTR MaLR 167 593 0 287 321 160 0 chr11 45982724 45982830 -102800642 - L2 LINE L2 0 3313 3191 25 0 0 0 chr11 45983069 45983094 -102800378 + AT_rich Low_complexity Low_complexity 1 25 0 429 269 67 0 chr11 45983100 45983219 -102800253 - L2 LINE L2 0 3313 3187 529 300 92 38 chr11 45983270 45983373 -102800099 - LTR33 LTR ERVL 0 521 425 1316 144 43 0 chr11 45983373 45983581 -102799891 + MER20 DNA MER1_type 3 219 0 529 300 92 38 chr11 45983581 45983944 -102799528 - LTR33 LTR ERVL -96 425 3 1456 154 163 30 chr11 45984029 45984360 -102799112 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr11 45984780 45984801 -102798671 + AT_rich Low_complexity Low_complexity 1 21 0 2733 133 17 5 chr11 45985310 45985730 -102797742 + MER61B LTR ERV1 1 425 0 312 315 9 18 chr11 45986262 45986373 -102797099 - MIR SINE MIR -113 149 40 186 196 22 22 chr11 45987013 45987059 -102796413 - L2 LINE L2 0 3272 3227 * 970 228 33 37 chr11 45987025 45987266 -102796206 - MIR SINE MIR -5 257 18 1639 147 49 7 chr11 45988658 45988943 -102794529 - AluSx SINE Alu -15 297 1 226 274 53 32 chr11 45988947 45989042 -102794430 + MIR SINE MIR 110 206 -56 302 277 21 21 chr11 45990182 45990276 -102793196 - MIR SINE MIR -98 164 71 12673 148 14 10 chr11 45990392 45993699 -102789773 - L1MA3 LINE L1 -166 6139 2816 594 211 54 0 chr11 45993849 45993996 -102789476 - L1MA10 LINE L1 0 6334 6180 302 306 126 16 chr11 45994034 45994217 -102789255 - L1MCb LINE L1 -3739 2825 2623 796 301 49 0 chr11 45996717 45996943 -102786529 + MIR SINE MIR 5 241 -21 889 97 30 0 chr11 45996971 45997136 -102786336 + GA-rich Low_complexity Low_complexity 2 171 0 2216 124 0 3 chr11 45997788 45998087 -102785385 + AluSg SINE Alu 1 298 -12 183 42 0 0 chr11 45998087 45998111 -102785361 + (TA)n Simple_repeat Simple_repeat 2 25 0 246 303 330 16 chr11 45998564 45998752 -102784720 + MIR SINE MIR 13 259 -3 401 350 34 21 chr11 45998866 45999103 -102784369 + L2 LINE L2 2619 2858 -456 416 272 18 0 chr11 45999174 45999288 -102784184 - HAL1 LINE L1 -726 1781 1666 340 265 154 0 chr11 45999306 45999442 -102784030 - HAL1 LINE L1 -895 1612 1456 379 211 55 31 chr11 45999499 45999627 -102783845 + L2 LINE L2 1290 1420 -1894 3996 215 50 18 chr11 45999682 46001062 -102782410 - L1MCb LINE L1 -4850 1195 4 1825 269 77 49 chr11 46001084 46001824 -102781648 + L2 LINE L2 1474 2234 -1080 794 231 175 14 chr11 46001824 46002110 -102781362 + MLT1J2 LTR MaLR 1 332 -118 198 275 77 11 chr11 46002372 46002463 -102781009 - L2 LINE L2 -405 2908 2812 3677 148 80 5 chr11 46002820 46003481 -102779991 + MER50 LTR ERV1 1 711 -23 1010 239 163 24 chr11 46004277 46004659 -102778813 + MLT1J2 LTR MaLR 1 434 -16 238 289 78 22 chr11 46005182 46005272 -102778200 - MIR3 SINE MIR -19 189 95 526 289 159 0 chr11 46005405 46005606 -102777866 - MIR SINE MIR -21 241 9 396 283 197 7 chr11 46006737 46006889 -102776583 + MER5A DNA MER1_type 9 189 0 526 259 30 0 chr11 46007063 46007198 -102776274 - MIR SINE MIR -17 245 107 376 267 10 0 chr11 46007352 46007453 -102776019 + MIR SINE MIR 150 251 -11 228 215 0 62 chr11 46007453 46007518 -102775954 + CT-rich Low_complexity Low_complexity 1 61 0 821 215 84 19 chr11 46007925 46008139 -102775333 + MIR SINE MIR 16 243 -19 256 317 106 7 chr11 46008160 46008302 -102775170 + MIR SINE MIR 101 256 -6 864 239 118 17 chr11 46008611 46008908 -102774564 + L2 LINE L2 2230 2556 -758 923 124 0 32 chr11 46009197 46009383 -102774089 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1206 42 30 0 chr11 46009527 46009650 -102773822 + (TTTC)n Simple_repeat Simple_repeat 1 298 0 1206 42 30 0 chr11 46009650 46009817 -102773655 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1263 307 68 4 chr11 46010022 46010470 -102773002 + L2 LINE L2 2538 3016 -297 220 150 0 0 chr11 46010504 46010544 -102772928 + L2 LINE L2 3274 3313 0 1294 255 146 98 chr11 46010558 46011021 -102772451 - HAL1 LINE L1 -1045 1462 1023 1638 47 0 11 chr11 46011021 46011211 -102772261 + L1PA3 LINE L1 5967 6154 -1 1294 255 146 98 chr11 46011211 46011763 -102771709 - HAL1 LINE L1 -1484 1023 367 1548 193 7 33 chr11 46011763 46012069 -102771403 - AluJo SINE Alu -7 305 8 1294 255 146 98 chr11 46012069 46012372 -102771100 - HAL1 LINE L1 -2140 367 80 17625 65 1 1 chr11 46012373 46014578 -102768894 + L1P LINE L1 1 2205 -3941 3548 226 54 72 chr11 46015149 46015265 -102768207 - L1MEc LINE L1 -5198 1198 1081 2295 96 7 0 chr11 46015265 46015568 -102767904 - AluY SINE Alu -6 305 1 3548 226 54 72 chr11 46015568 46016207 -102767265 - L1MEc LINE L1 -5315 1081 469 2076 118 23 10 chr11 46016207 46016512 -102766960 - AluSc SINE Alu 0 309 1 3548 226 54 72 chr11 46016512 46016939 -102766533 - L1MEc LINE L1 -5927 469 36 613 243 8 68 chr11 46016942 46017177 -102766295 + MER20B DNA MER1_type 561 781 -2 609 213 16 0 chr11 46017189 46017311 -102766161 + MER94 DNA DNA 1 124 -10 216 158 0 0 chr11 46017684 46017722 -102765750 + T-rich Low_complexity Low_complexity 1 38 0 984 249 32 12 chr11 46017815 46018068 -102765404 - MIR SINE MIR 0 262 5 1126 59 0 40 chr11 46018147 46018299 -102765173 + L1PA4 LINE L1 6007 6152 -3 413 294 79 75 chr11 46018504 46018973 -102764499 - L2 LINE L2 -837 2477 2007 1863 191 87 30 chr11 46019046 46019481 -102763991 - MLT1C LTR MaLR 0 467 8 831 186 20 138 chr11 46020845 46020926 -102762546 + MER20 DNA MER1_type 1 90 -129 1667 143 11 4 chr11 46020926 46021192 -102762280 - L1MB3 LINE L1 -7 6176 5909 831 186 20 138 chr11 46021192 46021309 -102762163 + MER20 DNA MER1_type 90 167 -52 2195 29 8 0 chr11 46021309 46021554 -102761918 + L1PA4 LINE L1 5909 6155 0 831 186 20 138 chr11 46021554 46021601 -102761871 + MER20 DNA MER1_type 167 218 -1 559 253 55 32 chr11 46021638 46021934 -102761538 - MLT1I LTR MaLR -15 394 61 1942 152 0 25 chr11 46022052 46022368 -102761104 - AluJb SINE Alu -4 308 1 307 244 133 0 chr11 46022771 46022861 -102760611 - MER5B DNA MER1_type -2 176 75 457 332 69 10 chr11 46023213 46023415 -102760057 - MIR SINE MIR 0 262 49 297 201 138 94 chr11 46024312 46024471 -102759001 - HAL1 LINE L1 -2295 212 47 1797 128 38 21 chr11 46024853 46025143 -102758329 - AluSx SINE Alu -17 295 1 239 253 91 50 chr11 46025519 46025567 -102757905 - MIR3 SINE MIR -8 200 155 370 315 66 0 chr11 46025567 46025748 -102757724 + MER117 DNA MER1_type 4 196 -1 239 253 91 50 chr11 46025748 46025798 -102757674 - MIR3 SINE MIR -53 155 98 722 143 4 2 chr11 46025939 46026198 -102757274 + AluSx SINE Alu 1 311 -1 517 250 15 0 chr11 46026205 46026337 -102757135 - L2 LINE L2 0 3313 3180 1163 259 110 23 chr11 46026546 46026936 -102756536 + L2 LINE L2 2885 3308 -5 1410 170 9 0 chr11 46027415 46027644 -102755828 + AluJb SINE Alu 68 298 -14 270 282 0 14 chr11 46027647 46027718 -102755754 - MIR3 SINE MIR -27 181 112 555 241 4 86 chr11 46028271 46028503 -102754969 - MER102a DNA MER1_type -3 327 115 257 105 0 0 chr11 46028864 46028902 -102754570 - Alu SINE Alu -24 278 241 1301 187 123 56 chr11 46029790 46030132 -102753340 - MLT1A1 LTR MaLR 0 365 1 393 243 121 59 chr11 46030185 46030407 -102753065 + MIR SINE MIR 20 262 0 475 231 43 0 chr11 46030685 46030802 -102752670 - L1MD3 LINE L1 -5 7990 7869 324 262 154 86 chr11 46030843 46031064 -102752408 - L1ME4a LINE L1 -226 5895 5660 1857 167 7 10 chr11 46031064 46031364 -102752108 - AluJo SINE Alu -11 301 3 6056 88 5 2 chr11 46031387 46032209 -102751263 - L1PA10 LINE L1 -4 6164 5341 2010 179 25 8 chr11 46032270 46032666 -102750806 + HSMAR2 DNA Mariner 1 403 -899 1793 165 0 11 chr11 46033712 46033997 -102749475 + AluJo SINE Alu 1 282 -30 229 333 29 10 chr11 46035524 46035626 -102747846 + L2 LINE L2 2948 3051 -221 650 293 22 31 chr11 46036276 46036498 -102746974 - MIR SINE MIR -32 230 11 430 264 95 66 chr11 46037213 46037455 -102746017 - MIR SINE MIR -10 252 4 1059 239 225 24 chr11 46038654 46039072 -102744400 + MLT1D LTR MaLR 1 502 -3 509 289 8 0 chr11 46039435 46039556 -102743916 + MIR SINE MIR 13 134 -128 202 288 0 9 chr11 46039674 46039741 -102743731 - MIR SINE MIR -69 139 74 6034 125 24 5 chr11 46039982 46041610 -102741862 - L1PA15 LINE L1 0 6165 4506 6299 241 78 33 chr11 46041737 46043394 -102740078 + MSTD-int LTR MaLR 2 1733 -2 1801 167 51 94 chr11 46043396 46043810 -102739662 + MSTD LTR MaLR 1 396 0 599 171 9 0 chr11 46044084 46044189 -102739283 + MSTD-int LTR MaLR 1628 1733 -2 1637 169 58 101 chr11 46044191 46044605 -102738867 + MSTD LTR MaLR 1 396 0 256 326 31 31 chr11 46044691 46044789 -102738683 - MIR3 SINE MIR -105 103 6 338 336 10 0 chr11 46045573 46045677 -102737795 + L2 LINE L2 2194 2298 -1016 885 233 155 28 chr11 46045938 46046255 -102737217 + L1MC/D LINE L1 5282 5638 -2170 210 195 110 0 chr11 46046493 46046575 -102736897 + L2 LINE L2 3112 3202 -111 415 336 22 0 chr11 46047026 46047252 -102736220 - L1MC4a LINE L1 -1906 5902 5672 750 282 48 31 chr11 46047258 46047609 -102735863 - L1MC4a LINE L1 -2196 5612 5256 2231 91 0 10 chr11 46047945 46048241 -102735231 - AluY SINE Alu -18 293 1 370 333 0 14 chr11 46048547 46048688 -102734784 + MIR SINE MIR 124 262 0 250 143 0 0 chr11 46048694 46048736 -102734736 - L1MA6 LINE L1 -6 6294 6253 1323 236 137 22 chr11 46048799 46049215 -102734257 + MLT1K LTR MaLR 95 558 -30 2296 84 0 10 chr11 46049282 46049579 -102733893 - AluY SINE Alu -17 294 1 710 235 8 0 chr11 46049591 46049723 -102733749 - FLAM_A SINE Alu 0 133 1 420 20 0 0 chr11 46050138 46050187 -102733285 + (CA)n Simple_repeat Simple_repeat 1 49 0 206 159 0 23 chr11 46050527 46050571 -102732901 + (TG)n Simple_repeat Simple_repeat 1 43 0 276 377 49 16 chr11 46050678 46050800 -102732672 + L2 LINE L2 3101 3226 -46 16114 27 3 1 chr11 46051293 46053859 -102729613 - L1PA3 LINE L1 -5 6150 3581 398 196 80 72 chr11 46054217 46054355 -102729117 - MLT1H LTR MaLR 0 549 411 1212 110 25 2 chr11 46054656 46054847 -102728625 - pTR5 LTR ERV1 -2044 394 66 352 189 33 22 chr11 46054847 46054937 -102728535 - LTR30 LTR ERV1 -80 642 552 5682 115 47 67 chr11 46054938 46056123 -102727349 - pTR5 LTR ERV1 -406 2032 741 230 245 0 0 chr11 46056874 46056923 -102726549 + MIR SINE MIR 182 230 -32 192 25 0 75 chr11 46057119 46057159 -102726313 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 373 344 26 7 chr11 46057682 46057833 -102725639 + MIR SINE MIR 33 186 -76 * 546 345 42 32 chr11 46057823 46058145 -102725327 + L2 LINE L2 2707 3035 -278 468 221 19 0 chr11 46058152 46058306 -102725166 + (CAT)n Simple_repeat Simple_repeat 3 159 0 770 257 34 10 chr11 46058316 46058522 -102724950 - MIR SINE MIR -7 255 45 309 292 73 52 chr11 46058649 46058841 -102724631 + L2 LINE L2 3118 3313 0 42887 38 25 2 chr11 46059440 46065483 -102717989 - L1PA3 LINE L1 0 6155 1 1383 78 6 0 chr11 46065550 46065729 -102717743 - L1PA8 LINE L1 0 6172 5993 333 311 33 50 chr11 46066177 46066357 -102717115 - L1ME3A LINE L1 -220 5950 5774 783 273 164 45 chr11 46066602 46067093 -102716379 - L2 LINE L2 0 3313 2730 782 249 53 0 chr11 46068354 46068523 -102714949 - MER45A DNA AcHobo 0 178 1 365 338 107 27 chr11 46068581 46068806 -102714666 + MIR SINE MIR 19 261 -1 1996 134 0 0 chr11 46069422 46069697 -102713775 + AluSx SINE Alu 3 277 -35 888 95 29 15 chr11 46070266 46070403 -102713069 - L1MA8 LINE L1 -12 6279 6141 236 314 19 29 chr11 46070409 46070514 -102712958 - MLT1J LTR MaLR -180 331 228 1383 136 19 0 chr11 46072708 46072914 -102710558 - AluSc SINE Alu -12 297 88 2161 179 92 3 chr11 46072983 46073374 -102710098 + MSTB LTR MaLR 1 426 0 2166 122 3 13 chr11 46074334 46074646 -102708826 + AluSg1 SINE Alu 1 309 0 1171 153 0 0 chr11 46074646 46074816 -102708656 + AluSg/x SINE Alu 134 303 -9 301 295 0 0 chr11 46074823 46074901 -102708571 - MER45 DNA AcHobo -74 1507 1430 * 3137 235 21 37 chr11 46074888 46075154 -102708318 - MER45B DNA AcHobo -240 800 531 1292 203 54 103 chr11 46075154 46075563 -102707909 - MLT1B LTR MaLR 0 390 2 3137 235 21 37 chr11 46075563 46076058 -102707414 - MER45B DNA AcHobo -509 531 51 323 340 78 44 chr11 46076130 46076401 -102707071 - MLT1J LTR MaLR -8 503 224 22 0 0 0 chr11 46076445 46076467 -102707005 + AT_rich Low_complexity Low_complexity 1 22 0 361 211 0 13 chr11 46076577 46076653 -102706819 - MLT1L LTR MaLR -537 78 4 * 784 293 110 55 chr11 46076653 46077174 -102706298 - MLT1G1 LTR MaLR -23 572 23 512 229 51 17 chr11 46077694 46077869 -102705603 + Charlie7 DNA MER1_type 2429 2609 -3 2487 76 0 3 chr11 46077999 46078302 -102705170 + AluY SINE Alu 1 302 -9 688 313 31 20 chr11 46078437 46078604 -102704868 - L2 LINE L2 -38 3275 3102 2137 128 3 3 chr11 46078604 46078916 -102704556 + AluSx SINE Alu 1 312 0 688 313 31 20 chr11 46078916 46079042 -102704430 - L2 LINE L2 -211 3102 2979 2145 115 7 0 chr11 46079110 46079405 -102704067 - AluSq SINE Alu -16 297 1 2383 149 65 34 chr11 46079828 46080243 -102703229 + MSTA LTR MaLR 1 428 0 611 267 54 32 chr11 46080299 46080520 -102702952 - LTR16B LTR ERVL -2 462 237 186 43 0 0 chr11 46080963 46080986 -102702486 + (TG)n Simple_repeat Simple_repeat 2 24 0 386 247 32 0 chr11 46082021 46082114 -102701358 - MIR3 SINE MIR -9 199 104 219 263 95 21 chr11 46082101 46082196 -102701276 + MIR3 SINE MIR 5 106 -102 * 7071 177 20 17 chr11 46082940 46084930 -102698542 + L1PA14 LINE L1 4079 6088 -73 2314 133 27 29 chr11 46084930 46085306 -102698166 + THE1C LTR MaLR 1 375 0 7071 177 20 17 chr11 46085306 46085379 -102698093 + L1PA14 LINE L1 6088 6159 -2 1547 162 28 4 chr11 46085738 46085991 -102697481 - AluSg SINE Alu -2 308 50 198 380 13 0 chr11 46086836 46086915 -102696557 - L2 LINE L2 -5 3267 3188 2772 73 41 0 chr11 46087192 46087533 -102695939 + THE1A LTR MaLR 1 355 0 246 346 49 43 chr11 46087549 46087711 -102695761 - L2 LINE L2 -208 3064 2902 7439 106 7 5 chr11 46088363 46089444 -102694028 - L1P LINE L1 -3188 2958 1875 * 11918 88 2 2 chr11 46089442 46091051 -102692421 + L1PA7 LINE L1 2996 4605 -1541 6785 72 0 0 chr11 46091051 46091867 -102691605 + L1PA7 LINE L1 5333 6149 -5 303 221 18 55 chr11 46092202 46092250 -102691222 + (TATAA)n Simple_repeat Simple_repeat 5 53 -108 2970 139 14 2 chr11 46092250 46092673 -102690799 + MSTA LTR MaLR 1 428 0 303 221 18 55 chr11 46092673 46092787 -102690685 + (TATAA)n Simple_repeat Simple_repeat 53 161 0 249 341 36 22 chr11 46093006 46093144 -102690328 + MIR SINE MIR 13 152 -110 1065 264 10 16 chr11 46093358 46093661 -102689811 + AluY SINE Alu 1 301 0 236 294 0 0 chr11 46093760 46093852 -102689620 + L1MEc LINE L1 1162 1253 -5143 411 250 57 28 chr11 46093862 46094038 -102689434 - MER20B DNA MER1_type -156 627 447 235 313 48 0 chr11 46094062 46094145 -102689327 - MER20B DNA MER1_type -45 174 88 320 202 9 101 chr11 46094248 46094357 -102689115 + MER58C DNA MER1_type 44 142 -73 244 250 12 25 chr11 46094357 46094437 -102689035 + GA-rich Low_complexity Low_complexity 2 80 0 1474 148 86 41 chr11 46094542 46094833 -102688639 - AluJo SINE Alu -4 308 5 1977 261 69 34 chr11 46094866 46095507 -102687965 - MLT2F LTR ERVL 0 663 1 186 267 44 0 chr11 46095985 46096030 -102687442 - L2 LINE L2 -12 3260 3214 336 237 108 0 chr11 46096634 46096727 -102686745 - L2 LINE L2 0 3313 3211 1860 60 0 0 chr11 46097017 46097235 -102686237 - L1PA7 LINE L1 -2 6152 5935 873 166 7 0 chr11 46097240 46097391 -102686081 + L1MB2 LINE L1 6010 6161 -10 2062 192 115 0 chr11 46097573 46098120 -102685352 - SATR1 Satellite Satellite -4 609 1 2193 168 102 53 chr11 46098149 46099215 -102684257 - SATR1 Satellite Satellite 0 1117 1 2328 177 120 22 chr11 46099240 46100117 -102683355 - SATR1 Satellite Satellite 0 963 1 2473 138 119 0 chr11 46100145 46100565 -102682907 - SATR1 Satellite Satellite 0 470 1 2262 155 119 2 chr11 46100594 46101007 -102682465 - SATR1 Satellite Satellite 0 470 10 427 231 7 36 chr11 46101024 46101331 -102682141 + (TTA)n Simple_repeat Simple_repeat 1 297 0 2292 167 83 18 chr11 46101331 46102427 -102681045 + SATR1 Satellite Satellite 1 1167 -92 2510 155 107 0 chr11 46102452 46103024 -102680448 + SATR1 Satellite Satellite 1 632 -4 2446 178 119 17 chr11 46103058 46109130 -102674342 - SATR1 Satellite Satellite 0 6692 1 1498 215 83 0 chr11 46109141 46109480 -102673992 - SATR1 Satellite Satellite -87 383 17 238 179 21 42 chr11 46109488 46109583 -102673889 + (TAA)n Simple_repeat Simple_repeat 2 94 0 353 229 11 44 chr11 46109660 46109843 -102673629 + (TTA)n Simple_repeat Simple_repeat 2 178 0 2214 165 109 3 chr11 46109861 46111887 -102671585 + SATR1 Satellite Satellite 1 2239 -93 7048 60 26 0 chr11 46111927 46112798 -102670674 - MER11D LTR ERVK -3 894 1 16181 42 1 1 chr11 46112798 46114838 -102668634 - HERVK11D LTR ERVK 0 7752 5711 * 17962 36 1 1 chr11 46114832 46117079 -102666393 - HERVK11D LTR ERVK -2432 5320 3073 6825 45 1 0 chr11 46117079 46117940 -102665532 - HERVK11D LTR ERVK -6890 862 1 6919 69 28 0 chr11 46117940 46118813 -102664659 - MER11D LTR ERVK 0 897 1 2020 191 102 5 chr11 46118813 46119987 -102663485 - SATR1 Satellite Satellite -2 1287 1 1639 183 166 10 chr11 46120019 46120483 -102662989 - SATR1 Satellite Satellite -1 536 1 259 202 5 78 chr11 46120484 46120677 -102662795 + (TTA)n Simple_repeat Simple_repeat 1 179 0 30 0 0 0 chr11 46120696 46120726 -102662746 + AT_rich Low_complexity Low_complexity 1 30 0 236 229 14 42 chr11 46120730 46120874 -102662598 + (TTA)n Simple_repeat Simple_repeat 3 142 0 2176 175 96 2 chr11 46120876 46122702 -102660770 + SATR1 Satellite Satellite 1 1998 -419 312 222 148 0 chr11 46123081 46123162 -102660310 + MIR SINE MIR 49 141 -121 682 254 23 12 chr11 46123352 46123525 -102659947 - MER5B DNA MER1_type -3 175 1 4393 122 17 30 chr11 46123603 46123984 -102659488 + L1MA5 LINE L1 5541 5908 -392 1741 146 134 27 chr11 46123984 46124313 -102659159 + THE1B LTR MaLR 1 364 0 4393 122 17 30 chr11 46124313 46124701 -102658771 + L1MA5 LINE L1 5908 6300 0 282 274 96 37 chr11 46124763 46124898 -102658574 - MIR SINE MIR -8 254 112 309 317 127 7 chr11 46124983 46125125 -102658347 + MIR3 SINE MIR 19 177 -31 236 230 88 90 chr11 46125126 46125239 -102658233 + MIR SINE MIR 42 149 -59 598 366 30 9 chr11 46126220 46126452 -102657020 + MIR SINE MIR 7 243 -19 339 350 68 17 chr11 46126463 46126640 -102656832 + MIR SINE MIR 53 238 -24 273 312 156 9 chr11 46126720 46126829 -102656643 + L2 LINE L2 3143 3267 -5 1457 220 110 17 chr11 46126944 46127362 -102656110 + MLT2B1 LTR ERVL 1 457 -63 300 27 0 0 chr11 46127364 46127401 -102656071 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 328 45 35 chr11 46127623 46127937 -102655535 - L3 LINE CR1 -1 1576 1260 3325 74 9 14 chr11 46129290 46129736 -102653736 - MLT2A1 LTR ERVL 0 444 1 28 29 0 0 chr11 46130304 46130339 -102653133 + AT_rich Low_complexity Low_complexity 1 35 0 190 304 75 60 chr11 46130386 46130587 -102652885 + L2 LINE L2 2805 3008 -264 538 268 60 6 chr11 46131000 46131168 -102652304 + MIR SINE MIR 65 241 -21 221 266 55 64 chr11 46131369 46131446 -102652026 + L2 LINE L2 3202 3279 -34 2289 182 51 27 chr11 46131446 46131935 -102651537 + MLT1D LTR MaLR 5 505 0 221 266 55 64 chr11 46131935 46131966 -102651506 + L2 LINE L2 3279 3309 -4 1647 191 24 3 chr11 46131994 46132288 -102651184 + AluJo SINE Alu 1 300 -12 396 258 8 16 chr11 46132430 46132554 -102650918 - LTR67 LTR ERVL 0 557 435 1668 208 96 28 chr11 46133606 46134043 -102649429 + MLT1C LTR MaLR 1 467 0 1881 132 48 58 chr11 46134205 46134584 -102648888 - THE1C LTR MaLR 0 375 1 913 121 20 13 chr11 46134634 46134783 -102648689 + L1PA16 LINE L1 6008 6157 -9 202 235 20 0 chr11 46135436 46135487 -102647985 - L2 LINE L2 0 3313 3262 925 239 109 62 chr11 46135628 46135828 -102647644 + L1ME LINE L1 4564 4753 -1393 2341 107 0 0 chr11 46135828 46136127 -102647345 + AluSg SINE Alu 1 299 -11 925 239 109 62 chr11 46136127 46136587 -102646885 + L1ME LINE L1 4753 5255 -891 3314 100 11 2 chr11 46136827 46137276 -102646196 - MLT2A2 LTR ERVL 0 453 1 509 249 104 66 chr11 46138294 46138679 -102644793 - MLT1G LTR MaLR -38 557 107 308 248 57 47 chr11 46138683 46138901 -102644571 + L1ME LINE L1 5653 5885 -285 29 28 0 0 chr11 46139081 46139117 -102644355 + AT_rich Low_complexity Low_complexity 1 36 0 1178 229 66 77 chr11 46139293 46139760 -102643712 - LTR40b LTR ERVL 0 462 1 1595 166 26 9 chr11 46140742 46141105 -102642367 - L1PA16 LINE L1 0 6154 5771 3698 121 14 0 chr11 46141148 46141704 -102641768 - L1PA15 LINE L1 -5 6160 5597 419 311 30 8 chr11 46141706 46141838 -102641634 + MIR SINE MIR 20 154 -108 319 256 102 80 chr11 46142190 46142327 -102641145 + MIR3 SINE MIR 12 151 -57 440 308 100 81 chr11 46142510 46142870 -102640602 + MLT1L LTR MaLR 120 486 -129 1809 152 0 14 chr11 46142976 46143273 -102640199 - AluSx SINE Alu -19 293 1 653 299 94 5 chr11 46143283 46143507 -102639965 - MIR SINE MIR -14 248 5 7286 44 1 0 chr11 46143543 46144864 -102638608 + L1PA6 LINE L1 4865 6187 0 522 323 58 21 chr11 46145967 46146295 -102637177 + MLT1L LTR MaLR 40 379 -236 250 277 0 15 chr11 46146507 46146572 -102636900 - MIR SINE MIR -184 78 15 404 311 95 5 chr11 46147221 46147411 -102636061 - MIR SINE MIR -6 256 50 409 227 106 8 chr11 46149050 46149182 -102634290 + MER103 DNA DNA 2 146 -20 318 222 0 16 chr11 46150684 46150747 -102632725 + L2 LINE L2 3209 3270 -2 4590 91 5 11 chr11 46150773 46151420 -102632052 - L1PA8A LINE L1 -13 6118 5476 * 10122 45 0 0 chr11 46151415 46153437 -102630035 - L1PA4 LINE L1 0 6155 4135 259 91 45 0 chr11 46153591 46153635 -102629837 - Alu SINE Alu -256 46 1 530 223 58 0 chr11 46153669 46153790 -102629682 - FLAM_A SINE Alu -5 128 1 2126 144 0 6 chr11 46154060 46154373 -102629099 - AluSx SINE Alu -1 311 1 300 153 83 7 chr11 46154373 46154517 -102628955 + (TA)n Simple_repeat Simple_repeat 2 156 0 187 118 49 49 chr11 46154517 46154619 -102628853 + (TTATA)n Simple_repeat Simple_repeat 5 106 0 182 37 37 0 chr11 46154962 46154989 -102628483 + (TA)n Simple_repeat Simple_repeat 2 29 0 1974 150 0 0 chr11 46155153 46155440 -102628032 + AluJb SINE Alu 1 287 -25 262 176 24 0 chr11 46155458 46155543 -102627929 + (TA)n Simple_repeat Simple_repeat 2 88 0 728 188 18 3 chr11 46155589 46155871 -102627601 - MLT1A1 LTR MaLR 0 365 1 2589 52 0 7 chr11 46156695 46157000 -102626472 - AluY SINE Alu -8 303 1 460 227 162 58 chr11 46157307 46157461 -102626011 - MER5A DNA MER1_type -1 188 19 553 216 224 0 chr11 46157479 46157736 -102625736 + MER33 DNA MER1_type 1 363 0 2024 153 37 3 chr11 46160602 46160956 -102622516 - MER47A DNA MER2_type 0 366 1 2232 98 20 0 chr11 46161238 46161409 -102622063 - AluSp SINE Alu -11 302 121 405 0 0 0 chr11 46161409 46161454 -102622018 + (TG)n Simple_repeat Simple_repeat 2 46 0 2232 98 20 0 chr11 46161454 46161578 -102621894 - AluSp SINE Alu -192 121 1 611 214 113 13 chr11 46161871 46162030 -102621442 - AluJb SINE Alu -15 297 123 209 293 0 17 chr11 46162889 46162947 -102620525 - MIR3 SINE MIR -6 202 146 2211 136 0 3 chr11 46163306 46163615 -102619857 - AluSx SINE Alu -4 308 1 2289 87 16 13 chr11 46164050 46164360 -102619112 - AluSp SINE Alu -2 311 1 907 201 19 0 chr11 46164366 46164525 -102618947 - AluJo/FRAM SINE Alu -16 296 135 1911 173 3 0 chr11 46164526 46164826 -102618646 - AluJo SINE Alu -11 301 1 471 264 58 58 chr11 46164905 46165079 -102618393 - MER5A DNA MER1_type -1 188 15 1133 67 0 0 chr11 46165245 46165379 -102618093 - AluSc SINE Alu -17 292 159 300 27 0 0 chr11 46166140 46166177 -102617295 + (TG)n Simple_repeat Simple_repeat 2 38 0 312 228 269 29 chr11 46166177 46166348 -102617124 + L2 LINE L2 1760 1971 -1343 2040 278 95 54 chr11 46166493 46167467 -102616005 + L2 LINE L2 2014 3036 -277 2261 107 7 0 chr11 46168044 46168343 -102615129 - AluSx SINE Alu -11 301 1 288 0 0 0 chr11 46169223 46169255 -102614217 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1049 190 63 86 chr11 46169266 46169534 -102613938 - AluJo SINE Alu -44 268 7 3297 176 129 10 chr11 46169617 46170305 -102613167 - MER21B LTR ERV1 -93 770 1 906 186 12 18 chr11 46170355 46170522 -102612950 + FRAM SINE Alu 1 166 0 1091 142 12 0 chr11 46170738 46170900 -102612572 - AluSq SINE Alu -19 294 131 2012 110 44 0 chr11 46170903 46171218 -102612254 - AluSq SINE Alu 0 327 1 388 321 58 42 chr11 46171379 46171619 -102611853 + L1ME4a LINE L1 5878 6121 0 2469 74 0 0 chr11 46171752 46172050 -102611422 - AluY SINE Alu -13 298 1 444 357 16 0 chr11 46172222 46172351 -102611121 - MIR3 SINE MIR -3 205 75 2411 131 48 10 chr11 46172597 46173350 -102610122 + L1P4 LINE L1 4887 5663 -503 28 61 0 0 chr11 46173884 46173933 -102609539 + AT_rich Low_complexity Low_complexity 1 49 0 624 142 217 0 chr11 46174475 46174595 -102608877 - MER46A DNA MER2_type -90 146 1 200 31 62 0 chr11 46175250 46175282 -102608190 + T-rich Low_complexity Low_complexity 2 35 0 2091 128 3 0 chr11 46175285 46175573 -102607899 - AluSx SINE Alu -23 289 1 356 301 59 21 chr11 46175845 46176084 -102607388 - L1ME LINE L1 -377 5744 5497 207 0 0 0 chr11 46176829 46176852 -102606620 + (TG)n Simple_repeat Simple_repeat 2 24 0 408 275 121 13 chr11 46177448 46177597 -102605875 - MIR3 SINE MIR -6 202 38 2070 113 3 0 chr11 46177617 46177925 -102605547 - AluSq SINE Alu 0 309 1 979 274 60 7 chr11 46179151 46179450 -102604022 - L2 LINE L2 -814 2500 2186 287 267 22 0 chr11 46179513 46179603 -102603869 + HAL1 LINE L1 1560 1651 -856 582 165 43 0 chr11 46179991 46180106 -102603366 + Charlie4 DNA MER1_type 1826 1945 -16 906 176 35 130 chr11 46180114 46180260 -102603212 + L1MC5 LINE L1 7330 7488 -473 1966 156 10 0 chr11 46180260 46180567 -102602905 - AluJb SINE Alu -2 310 1 906 176 35 130 chr11 46180567 46180713 -102602759 + L1MC5 LINE L1 7488 7565 -396 2091 92 0 58 chr11 46180713 46181040 -102602432 - AluSx SINE Alu -4 308 1 906 176 35 130 chr11 46181040 46181207 -102602265 + L1MC5 LINE L1 7565 7746 -215 1639 152 87 7 chr11 46181256 46181532 -102601940 + AluJo SINE Alu 1 298 -14 340 259 0 65 chr11 46181547 46181651 -102601821 + L1ME2 LINE L1 2245 2339 -3807 354 261 87 72 chr11 46181651 46181744 -102601728 - MER46C DNA MER2_type 0 338 248 1673 170 6 26 chr11 46181744 46182056 -102601416 + AluJb SINE Alu 1 306 -6 354 261 87 72 chr11 46182056 46182295 -102601177 - MER46C DNA MER2_type -90 248 1 340 259 0 65 chr11 46182295 46182329 -102601143 + L1ME2 LINE L1 2339 2374 -3772 21 0 0 0 chr11 46182583 46182604 -102600868 + AT_rich Low_complexity Low_complexity 1 21 0 41097 31 24 1 chr11 46182657 46188673 -102594799 - L1PA2 LINE L1 0 6155 1 363 274 22 74 chr11 46188821 46188956 -102594516 + L2 LINE L2 3162 3289 -24 548 291 173 25 chr11 46188971 46189294 -102594178 - L2 LINE L2 -44 3269 2899 2255 95 10 3 chr11 46189950 46190245 -102593227 + AluSc SINE Alu 1 297 -12 586 260 159 29 chr11 46190292 46190659 -102592813 + MLT1H1 LTR MaLR 59 448 -107 1429 248 75 10 chr11 46191383 46191782 -102591690 + MER70B LTR ERVL 6 430 -148 235 225 93 78 chr11 46192077 46192136 -102591336 + MLT1E1 LTR MaLR 1 58 -596 354 108 108 0 chr11 46192136 46192210 -102591262 + L1MA9 LINE L1 6230 6311 -1 235 225 93 78 chr11 46192210 46192279 -102591193 + MLT1E1 LTR MaLR 58 131 -523 * 1725 163 29 70 chr11 46192276 46192719 -102590753 + MSTB1 LTR MaLR 8 432 0 1242 207 122 70 chr11 46192719 46193216 -102590256 + MLT1E1 LTR MaLR 132 654 0 307 250 111 17 chr11 46193402 46193563 -102589909 + MIR SINE MIR 32 254 -8 2222 92 0 3 chr11 46193743 46194035 -102589437 - AluSg1 SINE Alu -18 291 1 225 284 125 46 chr11 46194508 46194836 -102588636 + L1ME2 LINE L1 2678 3031 -3115 725 218 0 0 chr11 46194841 46194974 -102588498 + FLAM_A SINE Alu 5 137 -5 385 296 92 54 chr11 46194975 46195367 -102588105 + L1ME2 LINE L1 3078 3484 -2662 1364 139 243 4 chr11 46195489 46195769 -102587703 - MER7A DNA MER2_type -1 345 1 374 282 94 0 chr11 46195789 46195959 -102587513 + L1ME2 LINE L1 5068 5253 -893 210 91 0 0 chr11 46196011 46196044 -102587428 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1284 209 37 18 chr11 46196047 46196320 -102587152 - AluJo SINE Alu -29 283 6 446 215 0 0 chr11 46196587 46196666 -102586806 - MLT1I LTR MaLR -238 171 93 672 252 75 53 chr11 46196753 46197019 -102586453 - MLT1I LTR MaLR -39 370 99 311 302 123 36 chr11 46197127 46197591 -102585881 + L1ME2 LINE L1 5434 5948 -216 22 35 0 0 chr11 46197660 46197689 -102585783 + AT_rich Low_complexity Low_complexity 1 29 0 1802 152 14 20 chr11 46197798 46197933 -102585539 + AluJo SINE Alu 1 135 -177 1911 154 7 7 chr11 46197933 46198231 -102585241 + AluJb SINE Alu 1 298 -14 1802 152 14 20 chr11 46198231 46198392 -102585080 + AluJo SINE Alu 135 295 -17 25 0 0 0 chr11 46199214 46199239 -102584233 + AT_rich Low_complexity Low_complexity 1 25 0 1677 149 7 65 chr11 46199265 46199573 -102583899 + AluJo SINE Alu 1 290 -22 2485 73 0 6 chr11 46199573 46199886 -102583586 + AluY SINE Alu 1 311 0 318 250 173 73 chr11 46199886 46200196 -102583276 + L1ME LINE L1 5287 5625 -539 1872 174 3 3 chr11 46200357 46200656 -102582816 + AluJb SINE Alu 1 299 -13 299 318 201 0 chr11 46202048 46202227 -102581245 - L2 LINE L2 -171 3142 2928 229 132 0 0 chr11 46202249 46202287 -102581185 - MLT1A2 LTR MaLR 0 390 353 2776 223 73 19 chr11 46202304 46203056 -102580416 - MER21B LTR ERV1 -54 809 17 817 174 135 111 chr11 46203063 46203397 -102580075 - MLT1A2 LTR MaLR -32 342 1 1673 291 183 6 chr11 46203417 46204200 -102579272 - L2 LINE L2 -424 2890 1970 2539 53 0 0 chr11 46204340 46204640 -102578832 - AluY SINE Alu -11 300 1 233 246 16 0 chr11 46205240 46205301 -102578171 - L1ME LINE L1 -513 5608 5547 468 35 0 0 chr11 46207142 46207200 -102576272 + (TG)n Simple_repeat Simple_repeat 2 59 0 1287 163 26 91 chr11 46208624 46208931 -102574541 + AluJo SINE Alu 2 288 -24 501 245 161 32 chr11 46209570 46209725 -102573747 - MER5A DNA MER1_type -6 183 9 285 326 0 12 chr11 46210418 46210504 -102572968 - MIR3 SINE MIR -6 202 118 1932 141 7 3 chr11 46210937 46211272 -102572200 + AluJb SINE Alu 1 336 0 222 225 0 0 chr11 46211663 46211703 -102571769 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1091 164 20 0 chr11 46211820 46212015 -102571457 + MER46A DNA MER2_type 38 236 0 224 339 153 25 chr11 46213488 46213606 -102569866 - L2 LINE L2 -4 3268 3136 326 176 185 56 chr11 46213717 46213825 -102569647 - L2 LINE L2 -20 3293 3172 222 369 0 36 chr11 46213895 46213979 -102569493 + L2 LINE L2 3168 3248 -24 23 0 0 0 chr11 46213979 46214002 -102569470 + AT_rich Low_complexity Low_complexity 1 23 0 437 271 182 82 chr11 46214183 46214600 -102568872 - MLT1L LTR MaLR -13 602 144 186 127 99 0 chr11 46215567 46215638 -102567834 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 2354 81 0 0 chr11 46217043 46217338 -102566134 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr11 46217340 46217368 -102566104 + AT_rich Low_complexity Low_complexity 1 28 0 2001 134 3 7 chr11 46218024 46218329 -102565143 + AluSx SINE Alu 2 305 -7 237 33 0 0 chr11 46219597 46219627 -102563845 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr11 46219779 46219806 -102563666 + (CATA)n Simple_repeat Simple_repeat 1 27 0 298 258 0 0 chr11 46220413 46220475 -102562997 + MIR SINE MIR 100 161 -101 547 108 48 0 chr11 46220845 46220928 -102562544 - AluJo/FRAM SINE Alu -19 293 207 828 192 7 0 chr11 46220928 46221074 -102562398 - AluJo SINE Alu -70 242 96 198 310 17 0 chr11 46221304 46221362 -102562110 + MIR SINE MIR 183 241 -21 1977 138 7 0 chr11 46221908 46222191 -102561281 - AluSx SINE Alu -27 285 1 231 0 77 0 chr11 46222201 46222240 -102561232 + T-rich Low_complexity Low_complexity 2 43 0 2213 96 4 0 chr11 46222243 46222524 -102560948 - AluSx SINE Alu -30 282 1 1318 198 67 18 chr11 46223645 46223928 -102559544 - AluJo SINE Alu -15 297 1 2284 117 0 0 chr11 46224251 46224559 -102558913 - AluSg SINE Alu -2 308 1 1859 161 43 0 chr11 46224677 46224976 -102558496 + AluJb SINE Alu 1 312 0 581 202 119 67 chr11 46227269 46227462 -102556010 - MER106B DNA MER1_type -5 1054 29 1152 128 84 75 chr11 46227941 46228168 -102555304 - MER46A DNA MER2_type -7 229 1 1804 171 0 0 chr11 46228236 46228523 -102554949 - AluJb SINE Alu -15 297 11 650 150 24 47 chr11 46228686 46228813 -102554659 + FLAM_C SINE Alu 4 127 -6 1933 141 0 3 chr11 46228881 46229194 -102554278 - AluSx SINE Alu 0 312 1 8201 111 35 11 chr11 46229282 46230551 -102552921 + HSMAR2 DNA Mariner 3 1302 0 244 302 12 35 chr11 46231282 46231368 -102552104 + L2 LINE L2 3188 3271 -1 472 258 80 12 chr11 46231738 46231901 -102551571 + MIR3 SINE MIR 32 205 -3 448 302 44 13 chr11 46232540 46232699 -102550773 + MIR SINE MIR 3 166 -96 1491 192 27 20 chr11 46233275 46233567 -102549905 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr11 46233576 46233598 -102549874 + AT_rich Low_complexity Low_complexity 1 22 0 655 223 69 45 chr11 46233633 46233835 -102549637 + MIR SINE MIR 56 262 0 339 158 263 0 chr11 46235400 46235476 -102547996 - Tigger2 DNA MER2_type -11 2707 2612 588 91 0 45 chr11 46235476 46235564 -102547908 + HY4 scRNA scRNA 1 84 -9 1433 97 209 29 chr11 46235589 46235939 -102547533 - Tigger2 DNA MER2_type -90 2628 1 2739 196 48 94 chr11 46236405 46237153 -102546319 - MER21B LTR ERV1 -52 811 98 305 200 33 100 chr11 46237255 46237345 -102546127 - MER21B LTR ERV1 -758 105 22 747 167 53 0 chr11 46237361 46237509 -102545963 + MER2 DNA MER2_type 8 163 -182 488 205 28 107 chr11 46237509 46237724 -102545748 - LTR24B LTR ERV1 0 635 414 363 190 25 13 chr11 46238041 46238120 -102545352 - LTR24B LTR ERV1 -488 88 9 394 237 0 0 chr11 46238210 46238286 -102545186 + MER2 DNA MER2_type 270 345 0 2347 87 0 3 chr11 46240942 46241254 -102542218 + AluY SINE Alu 1 311 0 1691 159 7 17 chr11 46241261 46241557 -102541915 + AluJo SINE Alu 4 296 -16 189 0 0 0 chr11 46242867 46242888 -102540584 + (A)n Simple_repeat Simple_repeat 1 21 0 6042 154 41 17 chr11 46244144 46245435 -102538037 + L1MA5A LINE L1 4124 5441 -746 2218 144 87 2 chr11 46245596 46246033 -102537439 + L1MA5A LINE L1 5814 6287 -10 1367 199 62 0 chr11 46246063 46246335 -102537137 + AluJo SINE Alu 1 289 -23 212 246 14 0 chr11 46247343 46247412 -102536060 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 226 202 24 chr11 46248772 46248856 -102534616 - L2 LINE L2 -16 3256 3158 2580 59 0 0 chr11 46248859 46249164 -102534308 - AluY SINE Alu -6 305 1 311 116 0 198 chr11 46249475 46249508 -102533964 + L2 LINE L2 2173 2180 -1134 2377 90 0 3 chr11 46249508 46249819 -102533653 - AluSq SINE Alu -3 310 1 311 116 0 198 chr11 46249819 46249871 -102533601 + L2 LINE L2 2180 2241 -1073 461 296 253 24 chr11 46249877 46250174 -102533298 + L2 LINE L2 2593 2957 -357 265 301 44 62 chr11 46250829 46250942 -102532530 - L2 LINE L2 -8 3264 3154 318 202 0 45 chr11 46252291 46252380 -102531092 + HsTC2 DNA Tc2 3 87 -1811 218 284 95 0 chr11 46252650 46252724 -102530748 - L2 LINE L2 -11 3302 3222 1937 152 0 3 chr11 46252958 46253255 -102530217 - AluJb SINE Alu -16 296 1 247 263 100 0 chr11 46253428 46253508 -102529964 - L1ME LINE L1 -367 5797 5710 310 290 30 19 chr11 46253524 46253658 -102529814 - L1ME LINE L1 -465 5656 5524 693 231 115 45 chr11 46253698 46253941 -102529531 - MIR SINE MIR 0 262 3 1971 152 0 34 chr11 46254042 46254365 -102529107 - AluSx SINE Alu 0 312 1 826 222 30 0 chr11 46254656 46254854 -102528618 - L1ME LINE L1 -1082 5064 4861 2377 293 62 10 chr11 46254854 46255845 -102527627 + L2 LINE L2 2266 3312 -1 29 28 0 0 chr11 46256215 46256251 -102527221 + AT_rich Low_complexity Low_complexity 1 36 0 1422 172 116 15 chr11 46256422 46256690 -102526782 + AluJo SINE Alu 9 303 -9 2355 235 90 43 chr11 46256701 46256780 -102526692 + L1ME3 LINE L1 4415 4489 -1673 1279 192 8 0 chr11 46256780 46257014 -102526458 + MER46A DNA MER2_type 1 236 0 2355 235 90 43 chr11 46257014 46257195 -102526277 + L1ME3 LINE L1 4489 4660 -1502 423 0 0 0 chr11 46257195 46257242 -102526230 + (CA)n Simple_repeat Simple_repeat 2 48 0 2355 235 90 43 chr11 46257242 46258581 -102524891 + L1ME3 LINE L1 4660 6093 -69 953 163 65 11 chr11 46259024 46259208 -102524264 - MER105 DNA DNA -9 195 2 180 250 62 47 chr11 46259343 46259407 -102524065 - L3 LINE CR1 -178 1399 1335 29 0 0 0 chr11 46260196 46260225 -102523247 + AT_rich Low_complexity Low_complexity 1 29 0 2167 95 0 54 chr11 46261767 46262082 -102521390 + AluSx SINE Alu 1 298 -14 982 189 6 0 chr11 46263904 46264068 -102519404 - FAM SINE Alu -10 165 1 232 350 29 39 chr11 46264375 46264478 -102518994 - MIR3 SINE MIR -104 104 3 182 37 37 0 chr11 46265184 46265211 -102518261 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 539 260 319 32 chr11 46265223 46265648 -102517824 - L2 LINE L2 -32 3281 2758 3169 127 21 8 chr11 46265658 46266131 -102517341 + MER1A DNA MER1_type 51 529 0 3637 275 123 19 chr11 46266134 46267464 -102516008 - L2 LINE L2 -568 2746 1278 204 292 46 69 chr11 46267464 46267594 -102515878 - L2 LINE L2 -863 2451 2325 21 0 0 0 chr11 46267808 46267829 -102515643 + AT_rich Low_complexity Low_complexity 1 21 0 2091 120 0 19 chr11 46268293 46268609 -102514863 - AluSx SINE Alu -2 310 1 2124 111 14 3 chr11 46268702 46268991 -102514481 + AluSx SINE Alu 1 292 -20 638 242 6 25 chr11 46269387 46269548 -102513924 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr11 46272512 46272533 -102510939 + AT_rich Low_complexity Low_complexity 1 21 0 320 321 15 30 chr11 46273407 46273541 -102509931 - MIR SINE MIR -82 180 49 1926 155 7 0 chr11 46274361 46274658 -102508814 + AluJb SINE Alu 1 299 -13 399 41 0 0 chr11 46274916 46274965 -102508507 + (CA)n Simple_repeat Simple_repeat 2 50 0 5499 47 20 3 chr11 46275000 46275698 -102507774 - L1PA7 LINE L1 0 6154 5445 320 222 167 0 chr11 46275851 46275941 -102507531 - MIR SINE MIR -25 237 133 569 152 0 10 chr11 46275960 46276059 -102507413 + FLAM_A SINE Alu 39 136 -6 256 235 0 0 chr11 46276059 46276110 -102507362 - MIR SINE MIR -118 144 94 2299 86 0 16 chr11 46277184 46277515 -102505957 - AluSc SINE Alu 0 309 1 576 0 0 0 chr11 46278385 46278449 -102505023 + (CA)n Simple_repeat Simple_repeat 2 65 0 461 284 149 0 chr11 46278661 46278809 -102504663 + MIR SINE MIR 47 216 -46 495 0 0 0 chr11 46279294 46279349 -102504123 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 258 312 0 13 chr11 46279389 46279466 -102504006 - 7SK RNA RNA -1 192 117 329 220 30 40 chr11 46279510 46279610 -102503862 - 7SK RNA RNA -85 108 10 437 342 169 25 chr11 46280945 46281626 -102501846 + L2 LINE L2 1876 2654 -660 351 309 59 20 chr11 46281759 46281911 -102501561 + MIR SINE MIR 95 252 -10 1782 128 62 4 chr11 46282388 46282661 -102500811 - AluSx SINE Alu -23 289 1 287 305 43 75 chr11 46283201 46283388 -102500084 - L3 LINE CR1 -251 1326 1146 339 321 57 21 chr11 46283472 46283612 -102499860 - L3 LINE CR1 -373 1204 1060 2268 90 0 10 chr11 46283676 46283987 -102499485 - AluSx SINE Alu -4 308 1 1887 136 7 23 chr11 46285204 46285506 -102497966 + AluSx SINE Alu 1 297 -15 2063 156 0 28 chr11 46286140 46286492 -102496980 - MER7A DNA MER2_type -5 341 2 314 250 123 17 chr11 46288842 46288936 -102494536 + L1ME4a LINE L1 5257 5340 -877 348 24 0 0 chr11 46288936 46288977 -102494495 + (CA)n Simple_repeat Simple_repeat 2 42 0 314 250 123 17 chr11 46288977 46289099 -102494373 + L1ME4a LINE L1 5340 5497 -720 444 271 136 5 chr11 46289118 46289332 -102494140 + L1ME4a LINE L1 5571 5812 -309 581 196 89 18 chr11 46289407 46289575 -102493897 + MER104 DNA MER2_type 1 180 0 623 217 25 19 chr11 46289589 46289746 -102493726 + L1ME4a LINE L1 5960 6117 -4 1104 327 96 36 chr11 46289800 46290268 -102493204 + L3 LINE CR1 10 505 -1072 699 313 48 56 chr11 46290271 46290735 -102492737 + L2 LINE L2 2751 3267 -5 536 269 110 0 chr11 46291110 46291255 -102492217 + MIR SINE MIR 6 166 -96 731 253 0 17 chr11 46291256 46291430 -102492042 + FRAM SINE Alu 1 171 -5 188 257 14 43 chr11 46291478 46291548 -102491924 + MIR SINE MIR 188 255 -7 1010 174 53 8 chr11 46291636 46291842 -102491630 + MER20 DNA MER1_type 7 219 0 872 327 107 46 chr11 46292731 46293629 -102489843 + L2 LINE L2 2048 3061 -252 209 301 146 39 chr11 46293735 46293838 -102489634 + L2 LINE L2 3193 3306 -7 282 211 187 56 chr11 46294831 46295082 -102488390 + L1ME4a LINE L1 5725 6008 -113 21 0 0 0 chr11 46295993 46296014 -102487458 + AT_rich Low_complexity Low_complexity 1 21 0 2131 92 7 11 chr11 46296435 46296718 -102486754 + AluSx SINE Alu 1 282 -30 323 44 22 0 chr11 46296718 46296763 -102486709 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1838 145 50 0 chr11 46296872 46297155 -102486317 + AluJo SINE Alu 1 297 -15 409 304 55 27 chr11 46297625 46297845 -102485627 + HAL1b LINE L1 415 640 -708 1698 144 23 7 chr11 46297956 46298277 -102485195 - MER47B DNA MER2_type -2 416 27 680 290 191 33 chr11 46298736 46299299 -102484173 + L1M4 LINE L1 2173 2646 -3500 218 31 0 31 chr11 46299299 46299331 -102484141 + (TAA)n Simple_repeat Simple_repeat 2 32 0 680 290 191 33 chr11 46299331 46299847 -102483625 + L1M4 LINE L1 2646 3419 -2727 228 318 118 22 chr11 46299961 46300316 -102483156 + L1M4 LINE L1 3514 3902 -2244 306 0 0 0 chr11 46300397 46300431 -102483041 + (CA)n Simple_repeat Simple_repeat 2 35 0 356 299 221 0 chr11 46300468 46300685 -102482787 + L1M4 LINE L1 4051 4315 -1831 635 281 85 49 chr11 46301643 46302219 -102481253 + L1MEc LINE L1 810 1406 -4990 480 229 117 127 chr11 46302261 46302803 -102480669 - MLT1H LTR MaLR 0 549 4 1817 123 34 87 chr11 46302920 46303278 -102480194 + MER44D DNA MER2_type 1 609 0 2038 156 37 0 chr11 46303891 46304244 -102479228 + MER47A DNA MER2_type 1 366 0 1034 278 92 28 chr11 46304784 46305219 -102478253 - MLT1H LTR MaLR -4 545 83 2448 25 7 0 chr11 46305320 46305606 -102477866 + AluYb8 SINE Alu 1 288 -30 678 298 63 0 chr11 46305620 46305872 -102477600 + L1MEc LINE L1 1525 1792 -4604 320 280 122 35 chr11 46305951 46306262 -102477210 + L1MEc LINE L1 1918 2255 -4141 677 259 70 57 chr11 46306313 46306417 -102477055 + L1MEc LINE L1 2384 2485 -3730 1652 203 100 44 chr11 46306417 46306895 -102476577 + MLT1D LTR MaLR 1 505 0 677 259 70 57 chr11 46306895 46307134 -102476338 + L1MEc LINE L1 2485 2737 -3478 2228 102 3 3 chr11 46307134 46307429 -102476043 - AluSg SINE Alu -15 295 1 677 259 70 57 chr11 46307429 46307539 -102475933 + L1MEc LINE L1 2737 2844 -3371 202 127 0 111 chr11 46307591 46307654 -102475818 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 760 304 107 49 chr11 46307741 46308213 -102475259 + L1M4 LINE L1 4457 4999 -1147 2214 104 0 13 chr11 46308213 46308511 -102474961 + AluSx SINE Alu 5 298 -14 760 304 107 49 chr11 46308511 46308861 -102474611 + L1M4 LINE L1 4999 5327 -819 347 254 72 39 chr11 46309471 46309823 -102473649 + L1ME LINE L1 696 1034 -5171 2562 195 29 6 chr11 46309824 46310568 -102472904 + L1MB2 LINE L1 4812 5570 -601 3527 154 42 2 chr11 46311296 46311885 -102471587 + L1MB2 LINE L1 5551 6163 -8 643 260 102 53 chr11 46311997 46312485 -102470987 + L1ME LINE L1 1136 1647 -4749 * 2843 226 91 26 chr11 46312476 46312868 -102470604 + L1ME2 LINE L1 4746 5111 -1053 1453 178 40 0 chr11 46312868 46313115 -102470357 + AluJo SINE Alu 1 257 -55 2843 226 91 26 chr11 46313115 46314052 -102469420 + L1ME2 LINE L1 5111 6164 0 410 296 45 11 chr11 46314043 46314222 -102469250 + L1ME LINE L1 1623 1807 -4589 * 829 226 11 28 chr11 46314900 46315081 -102468391 - MER5A DNA MER1_type -11 178 1 1964 237 82 63 chr11 46315959 46316290 -102467182 + L1ME LINE L1 2028 2351 -3864 1444 167 78 29 chr11 46316290 46316571 -102466901 + AluJo SINE Alu 1 295 -17 1964 237 82 63 chr11 46316571 46317110 -102466362 + L1ME LINE L1 2351 2906 -3309 2268 113 0 0 chr11 46317110 46317411 -102466061 + AluSx SINE Alu 3 303 -9 1964 237 82 63 chr11 46317411 46317687 -102465785 + L1ME LINE L1 2906 3175 -3040 1134 254 51 57 chr11 46317667 46317808 -102465664 + L1P3 LINE L1 5409 5549 -623 * 2119 132 3 28 chr11 46317808 46318127 -102465345 + AluSx SINE Alu 1 311 -1 1134 254 51 57 chr11 46318127 46318372 -102465100 + L1P3 LINE L1 5549 5796 -376 254 271 93 53 chr11 46318397 46318548 -102464924 + L1MC5 LINE L1 5784 5940 -1868 2794 104 35 146 chr11 46318857 46319345 -102464127 - Tigger2 DNA MER2_type 0 2718 1 404 174 0 87 chr11 46319401 46319499 -102463973 - Tigger4(Zombi) DNA MER2_type 0 2731 248 705 48 0 0 chr11 46319499 46319583 -102463889 + THE1-int LTR MaLR 358 441 -1139 1434 171 43 16 chr11 46319583 46319840 -102463632 - AluJb SINE Alu -48 264 1 933 157 87 0 chr11 46319843 46320015 -102463457 - MER46A DNA MER2_type -49 187 1 511 243 59 136 chr11 46320056 46320577 -102462895 + L1MC5 LINE L1 6415 6938 -870 541 108 0 0 chr11 46320643 46320717 -102462755 - THE1A LTR MaLR 0 355 282 7076 83 0 0 chr11 46320717 46321611 -102461861 - THE1A-int LTR MaLR -686 894 1 2902 75 20 0 chr11 46321611 46321959 -102461513 - THE1A LTR MaLR 0 355 1 1955 226 86 50 chr11 46321989 46322843 -102460629 + L1MC5 LINE L1 7025 7908 -53 1498 156 10 80 chr11 46322843 46323144 -102460328 - AluJo SINE Alu -32 280 1 2311 97 0 3 chr11 46323174 46323473 -102459999 + AluSg SINE Alu 1 298 -12 226 287 41 16 chr11 46323719 46323841 -102459631 + L1ME3A LINE L1 1333 1457 -4939 495 264 174 16 chr11 46323850 46324108 -102459364 - LTR50 LTR ERVL -4 791 493 680 200 186 9 chr11 46324163 46324378 -102459094 - LTR50 LTR ERVL -542 253 1 255 61 0 0 chr11 46324388 46324421 -102459051 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 320 289 10 10 chr11 46324422 46324519 -102458953 - L2 LINE L2 -14 3299 3203 385 297 22 31 chr11 46325223 46325445 -102458027 + L1ME3A LINE L1 2341 2560 -3655 3796 229 54 51 chr11 46325534 46326045 -102457427 - L1M4 LINE L1 -2417 3729 3221 1964 121 26 0 chr11 46326045 46326318 -102457154 - AluSx SINE Alu -32 280 1 3796 229 54 51 chr11 46326318 46327078 -102456394 - L1M4 LINE L1 -2925 3221 2454 2051 270 103 51 chr11 46327070 46328075 -102455397 + L1ME3A LINE L1 3206 4329 -1886 * 2213 126 0 0 chr11 46328075 46328376 -102455096 + AluSx SINE Alu 1 301 -11 2051 270 103 51 chr11 46328376 46328984 -102454488 + L1ME3A LINE L1 4329 4904 -1311 2383 77 143 15 chr11 46328989 46329433 -102454039 + MER1A DNA MER1_type 1 529 0 630 291 112 46 chr11 46329542 46330174 -102453298 + L1ME3A LINE L1 5034 5721 -514 486 194 120 43 chr11 46330188 46330366 -102453106 + L1ME3A LINE L1 5796 5956 -283 977 197 33 11 chr11 46330369 46330552 -102452920 + Tigger7 DNA MER2_type 4 190 -2297 512 216 10 0 chr11 46330585 46330682 -102452790 + Tigger7 DNA MER2_type 2389 2486 -1 206 207 11 35 chr11 46330919 46330974 -102452498 + (TTTA)n Simple_repeat Simple_repeat 4 58 -30 1887 141 3 43 chr11 46330974 46331278 -102452194 + AluJo SINE Alu 6 297 -15 206 207 11 35 chr11 46331278 46331309 -102452163 + (TTTA)n Simple_repeat Simple_repeat 58 88 0 1990 138 0 0 chr11 46331351 46331661 -102451811 - AluSx SINE Alu 0 310 1 1030 285 76 29 chr11 46331677 46331896 -102451576 + HAL1b LINE L1 351 558 -790 2124 142 43 56 chr11 46331896 46332291 -102451181 - MLT1B LTR MaLR 0 390 1 1030 285 76 29 chr11 46332291 46332517 -102450955 + HAL1b LINE L1 558 817 -531 26 50 0 0 chr11 46332676 46332716 -102450756 + AT_rich Low_complexity Low_complexity 1 40 0 847 298 71 29 chr11 46332719 46332907 -102450565 + L1MC/D LINE L1 4873 5052 -1268 1620 139 80 31 chr11 46332907 46333194 -102450278 - AluJo SINE Alu -11 301 1 847 298 71 29 chr11 46333194 46333675 -102449797 + L1MC/D LINE L1 5052 5568 -752 2227 114 7 0 chr11 46333675 46333973 -102449499 + AluSx SINE Alu 5 304 -8 314 186 72 31 chr11 46334058 46334155 -102449317 + L1MC4a LINE L1 6075 6175 -1633 658 237 26 42 chr11 46334176 46334366 -102449106 + MIR SINE MIR 64 250 -12 252 0 0 0 chr11 46335070 46335098 -102448374 + (A)n Simple_repeat Simple_repeat 1 28 0 325 298 26 19 chr11 46335274 46335395 -102448077 + MIR SINE MIR 4 135 -73 872 272 28 0 chr11 46335613 46335826 -102447646 - MER58A DNA MER1_type -2 222 4 249 275 101 0 chr11 46335870 46335939 -102447533 + MER5C DNA MER1_type 1 76 -248 454 319 70 13 chr11 46336786 46336943 -102446529 + L2 LINE L2 3107 3272 0 272 217 54 43 chr11 46337599 46337691 -102445781 + MIR SINE MIR 170 262 0 2325 96 0 3 chr11 46339881 46340174 -102443298 - AluSq SINE Alu -21 292 1 410 157 248 33 chr11 46340190 46340311 -102443161 - L1ME1 LINE L1 -15 6151 6005 362 176 33 44 chr11 46340454 46340636 -102442836 + CT-rich Low_complexity Low_complexity 1 180 0 4736 199 102 4 chr11 46343796 46344742 -102438730 - MER45B DNA AcHobo 0 1040 3 183 385 25 0 chr11 46344981 46345103 -102438369 + MIR SINE MIR 14 138 -124 256 260 0 0 chr11 46345779 46345829 -102437643 + L2 LINE L2 3213 3262 -10 353 325 61 65 chr11 46345854 46346085 -102437387 + MIR SINE MIR 2 231 -31 21 0 0 0 chr11 46346118 46346139 -102437333 + AT_rich Low_complexity Low_complexity 1 21 0 670 294 56 24 chr11 46346215 46346467 -102437005 + MIR SINE MIR 3 262 0 230 406 28 0 chr11 46347096 46347202 -102436270 - L2 LINE L2 -30 3242 3134 1799 137 27 38 chr11 46347441 46347733 -102435739 + AluJo SINE Alu 1 289 -23 643 151 0 0 chr11 46347818 46347911 -102435561 - AluJ SINE Alu -7 305 213 802 162 134 0 chr11 46347913 46348055 -102435417 - AluJ SINE Alu -151 161 1 2289 119 0 0 chr11 46348785 46349095 -102434377 - AluSx SINE Alu -1 311 2 595 307 9 33 chr11 46349936 46350151 -102433321 + MIR SINE MIR 53 262 0 2359 85 0 0 chr11 46350431 46350724 -102432748 - AluSg SINE Alu -17 293 1 21 0 0 0 chr11 46350732 46350753 -102432719 + AT_rich Low_complexity Low_complexity 1 21 0 328 267 199 15 chr11 46351663 46351794 -102431678 - MIR SINE MIR -33 229 75 1973 142 0 26 chr11 46351967 46352299 -102431173 - AluSx SINE Alu 0 312 1 269 324 15 52 chr11 46356381 46356517 -102426955 + MIR SINE MIR 24 154 -108 186 156 0 0 chr11 46356543 46356575 -102426897 - MIR SINE MIR -85 177 146 * 267 299 56 19 chr11 46356570 46356677 -102426795 + MIR SINE MIR 146 256 -6 195 129 0 0 chr11 46357647 46357678 -102425794 + (T)n Simple_repeat Simple_repeat 1 31 0 451 291 30 8 chr11 46358098 46358232 -102425240 - MIR SINE MIR -106 156 20 216 340 52 0 chr11 46359313 46359410 -102424062 - MIR SINE MIR -64 144 43 182 315 0 19 chr11 46359483 46359537 -102423935 + L2 LINE L2 3218 3270 -2 320 284 137 78 chr11 46359599 46359803 -102423669 - L2 LINE L2 0 3272 3057 1153 239 54 48 chr11 46359940 46360234 -102423238 + MER113 DNA MER1_type? 20 320 -201 1652 194 27 0 chr11 46360234 46360528 -102422944 + AluJb SINE Alu 3 304 -8 1153 239 54 48 chr11 46360528 46360730 -102422742 + MER113 DNA MER1_type? 320 519 -2 2170 111 7 0 chr11 46361327 46361616 -102421856 + AluSp SINE Alu 3 293 -20 2558 74 0 0 chr11 46361618 46361928 -102421544 + AluY SINE Alu 1 310 -1 1034 203 60 8 chr11 46361955 46362206 -102421266 + L1MB8 LINE L1 5914 6177 -1 225 154 0 0 chr11 46362206 46362245 -102421227 + GA-rich Low_complexity Low_complexity 1 39 0 194 355 0 0 chr11 46362396 46362472 -102421000 - MIR SINE MIR -6 256 181 2380 82 77 11 chr11 46363161 46363513 -102419959 - THE1C LTR MaLR 0 375 1 498 331 34 67 chr11 46366593 46366949 -102416523 + ERVL LTR ERVL 344 687 -5077 939 160 7 0 chr11 46367361 46367511 -102415961 - L1PA15 LINE L1 -142 6023 5873 1967 106 29 26 chr11 46367517 46367681 -102415791 - Tigger1 DNA MER2_type -1234 1184 1017 2141 153 97 5 chr11 46367681 46368073 -102415399 + MSTA LTR MaLR 1 428 0 1967 106 29 26 chr11 46368073 46368220 -102415252 - Tigger1 DNA MER2_type -1401 1017 872 761 92 0 0 chr11 46368197 46368295 -102415177 - MSTA LTR MaLR -330 98 1 * 355 183 0 0 chr11 46368295 46368347 -102415125 + Tigger1 DNA MER2_type 1021 1072 -1346 5574 142 43 2 chr11 46368320 46369228 -102414244 - Tigger1 DNA MER2_type -1473 945 1 377 301 15 8 chr11 46369461 46369594 -102413878 + ERVL LTR ERVL 1579 1712 -4052 1157 298 85 4 chr11 46369673 46370152 -102413320 + ERVL LTR ERVL 1827 2390 -3035 735 185 0 15 chr11 46370246 46370376 -102413096 - MER63 DNA MER1_type -282 780 27 487 330 20 0 chr11 46370390 46370593 -102412879 + ERVL LTR ERVL 2338 2544 -3110 403 250 62 0 chr11 46371016 46371128 -102412344 + LTR67 LTR ERVL 431 549 -8 1546 36 5 21 chr11 46371260 46371474 -102411998 + L1PA3 LINE L1 5967 6155 0 21 0 0 0 chr11 46371620 46371641 -102411831 + AT_rich Low_complexity Low_complexity 1 21 0 398 331 124 36 chr11 46371641 46372173 -102411299 + L2 LINE L2 1421 1999 -1315 1314 118 94 0 chr11 46372227 46372430 -102411042 - MER30 DNA MER1_type -6 224 3 572 280 86 110 chr11 46372432 46373225 -102410247 + L2 LINE L2 2072 2845 -469 182 304 0 0 chr11 46373580 46373626 -102409846 + L2 LINE L2 3264 3309 -4 1619 213 40 47 chr11 46373659 46374129 -102409343 + MLT1C LTR MaLR 1 467 0 189 121 0 0 chr11 46374239 46374272 -102409200 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 212 185 19 0 chr11 46374282 46374336 -102409136 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 337 35 0 chr11 46374711 46374797 -102408675 + L2 LINE L2 2708 2796 -518 484 332 77 35 chr11 46374880 46375190 -102408282 + L2 LINE L2 2991 3313 0 1483 245 85 8 chr11 46375365 46375846 -102407626 - LTR33 LTR ERVL 0 521 4 1950 86 10 14 chr11 46376078 46376368 -102407104 - L1MA1 LINE L1 0 6302 6014 5967 159 16 37 chr11 46376443 46378007 -102405465 - L1MA3 LINE L1 0 6305 4801 2182 112 0 10 chr11 46378007 46378320 -102405152 - AluSx SINE Alu -2 310 1 5967 159 16 37 chr11 46378320 46378885 -102404587 - L1MA3 LINE L1 -1504 4801 4226 258 290 29 80 chr11 46381222 46381360 -102402112 - L2 LINE L2 -12 3301 3171 182 250 114 0 chr11 46381402 46381446 -102402026 + MIR3 SINE MIR 120 168 -40 2683 156 49 8 chr11 46381518 46382030 -102401442 + L1MB4 LINE L1 5640 6172 -8 409 270 85 97 chr11 46382396 46382572 -102400900 - Charlie8 DNA MER1_type -96 245 71 2227 89 0 29 chr11 46382572 46382885 -102400587 + AluSg SINE Alu 1 304 -6 409 270 85 97 chr11 46382885 46382956 -102400516 - Charlie8 DNA MER1_type -270 71 1 1663 158 0 18 chr11 46383110 46383394 -102400078 - AluJb SINE Alu -33 279 1 223 239 60 15 chr11 46383398 46383465 -102400007 - L3 LINE CR1 -180 1397 1328 1109 227 40 4 chr11 46383603 46383854 -102399618 - MIR SINE MIR 0 262 3 226 307 64 43 chr11 46384006 46384146 -102399326 + L3b LINE CR1 1317 1459 -124 1746 170 0 6 chr11 46384185 46384497 -102398975 + AluJo SINE Alu 1 310 -2 811 216 0 0 chr11 46384693 46384865 -102398607 + FRAM SINE Alu 1 172 0 345 291 8 43 chr11 46384901 46385018 -102398454 - L3 LINE CR1 -3 1574 1462 484 260 66 54 chr11 46385310 46385667 -102397805 + MLT1H LTR MaLR 100 525 -17 919 290 105 35 chr11 46385710 46386252 -102397220 + MLT1K LTR MaLR 3 582 -6 1269 68 0 0 chr11 46386264 46386446 -102397026 + L1PA3 LINE L1 5989 6170 0 26 0 0 0 chr11 46386474 46386500 -102396972 + AT_rich Low_complexity Low_complexity 1 26 0 2490 129 14 3 chr11 46386753 46387124 -102396348 + THE1C LTR MaLR 1 375 0 907 286 86 12 chr11 46387885 46388210 -102395262 + MLT1I LTR MaLR 59 407 -2 249 240 80 27 chr11 46388344 46388419 -102395053 + L2 LINE L2 3235 3313 0 231 169 0 34 chr11 46390109 46390198 -102393274 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 3470 150 37 62 chr11 46391106 46391813 -102391659 + LTR8 LTR ERV1 2 690 -1 216 356 17 0 chr11 46392543 46392658 -102390814 - L2 LINE L2 -338 2976 2860 226 343 43 14 chr11 46392925 46393065 -102390407 + L2 LINE L2 2894 3037 -235 1459 269 76 18 chr11 46393165 46393905 -102389567 + L2 LINE L2 2525 3313 0 323 242 157 56 chr11 46394209 46394345 -102389127 - MER112 DNA MER1_type -58 202 42 2156 110 3 0 chr11 46394345 46394654 -102388818 + AluSq SINE Alu 1 310 -3 323 242 157 56 chr11 46394654 46394695 -102388777 - MER112 DNA MER1_type -218 42 7 713 255 10 54 chr11 46394754 46394958 -102388514 - MIR SINE MIR -3 259 65 935 266 102 4 chr11 46395230 46395505 -102387967 - LTR33 LTR ERVL -201 320 19 522 0 0 0 chr11 46395950 46396008 -102387464 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chr11 46398404 46398424 -102385048 + (A)n Simple_repeat Simple_repeat 1 20 0 1627 93 13 0 chr11 46398787 46399013 -102384459 - AluSc SINE Alu -12 297 69 420 242 52 81 chr11 46399588 46399796 -102383676 + MIR SINE MIR 23 222 -40 908 242 28 12 chr11 46400124 46400376 -102383096 - MIR SINE MIR -3 259 4 607 251 63 37 chr11 46400380 46400571 -102382901 - MIR SINE MIR -65 197 2 194 267 17 50 chr11 46401255 46401315 -102382157 - L2 LINE L2 -76 3196 3139 349 216 23 57 chr11 46401522 46401610 -102381862 - L2 LINE L2 0 3272 3188 311 324 99 14 chr11 46401582 46401724 -102381748 - L2 LINE L2 -415 2899 2746 * 256 281 0 0 chr11 46402300 46402364 -102381108 + MIR SINE MIR 199 262 0 1396 204 23 23 chr11 46402449 46402757 -102380715 + AluJo SINE Alu 1 308 -4 398 239 78 84 chr11 46402894 46403203 -102380269 - L1M3de LINE L1 -4704 1346 754 240 135 135 39 chr11 46403250 46403302 -102380170 + MADE1 DNA Mariner 24 80 0 675 276 132 12 chr11 46403302 46403559 -102379913 + L2 LINE L2 2162 2449 -865 2005 123 7 17 chr11 46403569 46403871 -102379601 + AluSx SINE Alu 1 299 -13 1094 264 159 17 chr11 46403874 46404417 -102379055 + L2 LINE L2 2678 3313 0 1856 98 66 21 chr11 46404590 46404759 -102378713 - AluSx SINE Alu -12 300 111 192 77 0 0 chr11 46404759 46404785 -102378687 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1856 98 66 21 chr11 46404785 46404902 -102378570 - AluSx SINE Alu -201 111 1 2224 163 50 89 chr11 46405611 46405857 -102377615 - MLT2B1 LTR ERVL 0 520 266 2068 119 0 10 chr11 46405857 46406167 -102377305 + AluSg SINE Alu 1 307 -3 2224 163 50 89 chr11 46406167 46406459 -102377013 - MLT2B1 LTR ERVL -254 266 3 826 181 48 71 chr11 46406928 46407138 -102376334 - MER3 DNA MER1_type 0 209 5 212 323 0 0 chr11 46407260 46407322 -102376150 + L2 LINE L2 2915 2976 -296 865 261 153 54 chr11 46407427 46407536 -102375936 + LTR16C LTR ERVL 104 201 -290 2963 117 19 0 chr11 46407536 46407962 -102375510 - MER57B LTR ERV1 0 434 1 865 261 153 54 chr11 46407962 46408205 -102375267 + LTR16C LTR ERVL 201 491 0 2107 94 10 0 chr11 46408271 46408559 -102374913 + AluSg SINE Alu 1 291 -19 2066 118 3 19 chr11 46408724 46409039 -102374433 + AluSx SINE Alu 1 310 -2 567 362 32 34 chr11 46409130 46409567 -102373905 - L2 LINE L2 -556 2758 2323 795 143 93 0 chr11 46409571 46409711 -102373761 + MER5A DNA MER1_type 1 153 -36 751 219 24 76 chr11 46409721 46409931 -102373541 + MER63A DNA MER1_type 2 200 -10 183 338 13 0 chr11 46409998 46410075 -102373397 - L2 LINE L2 -1019 2295 2218 338 269 55 86 chr11 46410113 46410370 -102373102 - L2 LINE L2 -76 3196 2948 265 348 102 13 chr11 46410601 46410837 -102372635 + L2 LINE L2 2853 3109 -163 198 0 0 0 chr11 46411314 46411336 -102372136 + (CTG)n Simple_repeat Simple_repeat 3 24 0 2167 105 7 0 chr11 46411608 46411904 -102371568 - AluSx SINE Alu -14 298 1 395 311 126 0 chr11 46411939 46412074 -102371398 + L2 LINE L2 3162 3313 0 4823 194 11 5 chr11 46412243 46412608 -102370864 + L1MB3 LINE L1 5118 5479 -704 2159 122 0 0 chr11 46412608 46412904 -102370568 + AluSx SINE Alu 1 296 -16 4823 194 11 5 chr11 46412904 46413599 -102369873 + L1MB3 LINE L1 5479 6183 0 451 294 80 72 chr11 46413599 46413960 -102369512 - L2 LINE L2 -831 2483 2120 245 282 153 90 chr11 46413990 46414291 -102369181 + L2 LINE L2 2953 3272 0 420 231 110 83 chr11 46414827 46415091 -102368381 - MLT1H LTR MaLR 0 549 279 416 246 17 51 chr11 46415121 46415239 -102368233 - FLAM_A SINE Alu -1 141 28 262 253 46 11 chr11 46415370 46415457 -102368015 - MLT1H LTR MaLR -459 90 1 2289 95 0 3 chr11 46415901 46416197 -102367275 - AluSg SINE Alu -15 295 1 660 283 37 0 chr11 46416324 46416515 -102366957 - MARNA DNA Mariner -196 390 193 214 192 19 0 chr11 46418459 46418511 -102364961 + (CA)n Simple_repeat Simple_repeat 1 53 0 218 308 0 0 chr11 46419107 46419159 -102364313 + polypurine Low_complexity Low_complexity 6 57 0 219 217 43 14 chr11 46420368 46420437 -102363035 + CT-rich Low_complexity Low_complexity 2 72 0 24 32 0 0 chr11 46422030 46422061 -102361411 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr11 46423463 46423490 -102359982 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr11 46423720 46423742 -102359730 + GC_rich Low_complexity Low_complexity 1 22 0 207 55 36 73 chr11 46424015 46424070 -102359402 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 210 91 0 0 chr11 46426105 46426138 -102357334 + (CAG)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chr11 46427179 46427208 -102356264 + (CCTCG)n Simple_repeat Simple_repeat 2 30 0 422 250 39 55 chr11 46429780 46429908 -102353564 - MIR3 SINE MIR -5 203 78 242 281 157 16 chr11 46430912 46431033 -102352439 + MIR3 SINE MIR 55 192 -16 * 356 230 0 27 chr11 46431025 46431099 -102352373 - L2 LINE L2 0 3313 3242 473 208 8 33 chr11 46432305 46432425 -102351047 + MIR SINE MIR 105 221 -41 311 43 0 22 chr11 46432441 46432487 -102350985 + (TTA)n Simple_repeat Simple_repeat 3 47 0 207 0 0 0 chr11 46432828 46432851 -102350621 + (TTA)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr11 46433321 46433363 -102350109 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 46433480 46433502 -102349970 + AT_rich Low_complexity Low_complexity 1 22 0 634 226 43 108 chr11 46433601 46433880 -102349592 + MIR SINE MIR 2 262 0 198 0 0 0 chr11 46434281 46434303 -102349169 + (A)n Simple_repeat Simple_repeat 1 22 0 2064 110 37 20 chr11 46434351 46434651 -102348821 - AluY SINE Alu -6 305 1 180 0 0 0 chr11 46434655 46434675 -102348797 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr11 46434905 46434933 -102348539 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr11 46435460 46435505 -102347967 + AT_rich Low_complexity Low_complexity 1 45 0 204 292 0 0 chr11 46437589 46437661 -102345811 + A-rich Low_complexity Low_complexity 1 72 0 28 29 0 0 chr11 46438300 46438335 -102345137 + AT_rich Low_complexity Low_complexity 1 35 0 201 147 0 0 chr11 46438361 46438395 -102345077 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 194 62 31 0 chr11 46439678 46439710 -102343762 + (GA)n Simple_repeat Simple_repeat 2 34 0 238 250 0 44 chr11 46439816 46439884 -102343588 - MIR3 SINE MIR -4 204 140 186 71 0 0 chr11 46439885 46439913 -102343559 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 648 233 0 0 chr11 46439913 46440033 -102343439 - FLAM_C SINE Alu -22 121 2 252 238 38 86 chr11 46440035 46440140 -102343332 - MIR SINE MIR -56 152 53 1863 152 6 29 chr11 46440262 46440577 -102342895 - AluJo SINE Alu 0 312 5 210 296 42 0 chr11 46440772 46440843 -102342629 - L2 LINE L2 -11 3261 3188 220 171 0 49 chr11 46440856 46440897 -102342575 + L2 LINE L2 3263 3301 -12 191 425 20 12 chr11 46441111 46441358 -102342114 - L2 LINE L2 -342 2972 2724 1018 126 69 6 chr11 46441463 46441655 -102341817 - AluSg/x SINE Alu 0 310 122 267 163 23 35 chr11 46441758 46441844 -102341628 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 1648 152 14 51 chr11 46441903 46442199 -102341273 + AluJb SINE Alu 5 289 -23 515 248 32 25 chr11 46442356 46442513 -102340959 + L1ME LINE L1 5643 5800 -321 1816 158 10 3 chr11 46443768 46444059 -102339413 + AluJb SINE Alu 1 293 -19 21 57 0 0 chr11 46444157 46444192 -102339280 + AT_rich Low_complexity Low_complexity 1 35 0 1571 196 21 3 chr11 46444192 46444478 -102338994 - AluJo SINE Alu -21 291 1 919 179 78 0 chr11 46444480 46444659 -102338813 - L1MC1 LINE L1 -5 6328 6136 451 229 144 53 chr11 46444962 46445150 -102338322 - MER102a DNA MER1_type -18 312 108 2188 112 0 3 chr11 46445158 46445452 -102338020 - AluSc SINE Alu -16 293 1 607 200 0 8 chr11 46446051 46446171 -102337301 + MIR SINE MIR 114 232 -30 342 0 0 0 chr11 46446375 46446413 -102337059 + (CA)n Simple_repeat Simple_repeat 2 39 0 575 284 0 0 chr11 46446627 46446761 -102336711 - MIR SINE MIR -48 214 81 1616 221 118 45 chr11 46447446 46448135 -102335337 - L1MC5 LINE L1 -268 7693 6955 3154 125 17 4 chr11 46448263 46448728 -102334744 - L1PA16 LINE L1 -2 6164 5694 3206 108 15 24 chr11 46448915 46449379 -102334093 - LTR14 LTR ERVK 0 548 89 2798 37 0 0 chr11 46449479 46449807 -102333665 - L1P LINE L1 -2286 3860 3533 689 165 38 15 chr11 46449810 46449943 -102333529 + MER3 DNA MER1_type 72 207 -2 251 288 104 32 chr11 46450385 46450510 -102332962 - MARNA DNA Mariner -194 392 259 266 271 84 32 chr11 46450601 46450756 -102332716 - L2 LINE L2 -2 3311 3149 247 52 86 0 chr11 46450772 46450830 -102332642 + (TA)n Simple_repeat Simple_repeat 1 63 0 463 203 154 8 chr11 46451255 46451378 -102332094 + L2 LINE L2 3173 3313 0 720 261 115 72 chr11 46451495 46451855 -102331617 - MLT1H LTR MaLR 0 549 169 2167 147 0 0 chr11 46451855 46452167 -102331305 - AluSx SINE Alu 0 312 1 720 261 115 72 chr11 46452167 46452197 -102331275 - MLT1H LTR MaLR -380 169 142 6543 30 4 4 chr11 46452297 46453030 -102330442 + L1PA5 LINE L1 5422 6154 0 418 237 0 0 chr11 46453030 46453106 -102330366 - MER3 DNA MER1_type -133 76 1 3455 94 89 61 chr11 46453373 46453707 -102329765 - MER4B LTR ERV1 0 610 250 2305 99 0 0 chr11 46453707 46454010 -102329462 - AluSc SINE Alu -6 303 1 3455 94 89 61 chr11 46454010 46454268 -102329204 - MER4B LTR ERV1 -360 250 1 1936 173 0 0 chr11 46454382 46454682 -102328790 + AluJb SINE Alu 1 300 -12 768 219 118 31 chr11 46455174 46455461 -102328011 + L1MC5 LINE L1 7603 7914 -47 1724 190 143 94 chr11 46455929 46456587 -102326885 - L1ME3 LINE L1 -21 6141 5452 21 36 0 0 chr11 46456807 46456835 -102326637 + AT_rich Low_complexity Low_complexity 1 28 0 1281 234 58 21 chr11 46457472 46457899 -102325573 - L1MC4 LINE L1 0 8042 7600 618 266 116 5 chr11 46458006 46458213 -102325259 - MIR SINE MIR -29 233 4 290 212 59 12 chr11 46458397 46458482 -102324990 + MIR SINE MIR 174 262 0 183 319 0 0 chr11 46458479 46458526 -102324946 - MIR3 SINE MIR -45 163 117 * 23 33 0 0 chr11 46458968 46458998 -102324474 + AT_rich Low_complexity Low_complexity 1 30 0 399 277 157 15 chr11 46459953 46460227 -102323245 - L1MC4 LINE L1 -10 8032 7720 1861 160 3 3 chr11 46461036 46461349 -102322123 - AluSp SINE Alu 0 313 1 21 0 0 0 chr11 46462298 46462319 -102321153 + AT_rich Low_complexity Low_complexity 1 21 0 2374 96 0 0 chr11 46462541 46462842 -102320630 + AluSx SINE Alu 1 301 -11 1438 164 211 13 chr11 46463828 46464140 -102319332 + MLT1A2 LTR MaLR 1 374 0 334 327 118 0 chr11 46464425 46464535 -102318937 - L2 LINE L2 -327 2986 2864 821 276 42 45 chr11 46464543 46464851 -102318621 + L2 LINE L2 3006 3312 -1 1684 203 0 3 chr11 46465312 46465612 -102317860 - AluJb SINE Alu -13 299 1 668 139 0 0 chr11 46465620 46465721 -102317751 - AluJb SINE Alu -181 131 31 2138 114 30 7 chr11 46466255 46466552 -102316920 - AluSx SINE Alu -8 304 1 1821 100 135 3 chr11 46466646 46466965 -102316507 - MER46B DNA MER2_type 0 236 1 217 296 37 28 chr11 46467038 46467146 -102316326 - L2 LINE L2 -320 2952 2844 1425 198 136 54 chr11 46467194 46467658 -102315814 - MLT1D LTR MaLR -3 502 1 25 31 0 0 chr11 46467669 46467701 -102315771 + AT_rich Low_complexity Low_complexity 1 32 0 1502 158 75 43 chr11 46467823 46468101 -102315371 - AluJo SINE Alu -25 287 1 1429 213 39 47 chr11 46468259 46468326 -102315146 - MLT1C LTR MaLR -7 460 394 2287 110 3 0 chr11 46468326 46468625 -102314847 + AluSq SINE Alu 1 300 -13 1429 213 39 47 chr11 46468625 46469021 -102314451 - MLT1C LTR MaLR -73 394 1 1038 277 91 13 chr11 46469026 46469409 -102314063 - LTR16A LTR ERVL -13 437 25 1542 277 11 0 chr11 46469716 46469994 -102313478 + AluJo SINE Alu 1 281 -31 381 149 14 40 chr11 46470739 46470813 -102312659 - MIR3 SINE MIR -2 206 135 23 0 0 0 chr11 46473395 46473418 -102310054 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 46475341 46475371 -102308101 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr11 46477680 46477709 -102305763 + AT_rich Low_complexity Low_complexity 1 29 0 302 296 0 37 chr11 46478294 46478402 -102305070 - MLT1-int LTR MaLR -830 541 438 447 171 20 33 chr11 46478657 46478787 -102304685 - MLT1H LTR MaLR -402 147 17 272 364 20 20 chr11 46478836 46479031 -102304441 + Charlie8 DNA MER1_type 2 196 -2221 579 232 155 77 chr11 46479144 46479401 -102304071 - L2 LINE L2 -63 3250 2952 2148 111 0 10 chr11 46479401 46479698 -102303774 + AluSc SINE Alu 1 294 -15 579 232 155 77 chr11 46479698 46479828 -102303644 - L2 LINE L2 -361 2952 2833 2310 112 0 6 chr11 46480256 46480570 -102302902 + AluSq SINE Alu 1 312 -1 243 113 48 0 chr11 46480639 46480701 -102302771 + (TA)n Simple_repeat Simple_repeat 1 65 0 350 252 65 32 chr11 46480701 46480824 -102302648 + L1MC4 LINE L1 6610 6736 -1306 1239 129 0 10 chr11 46482944 46483138 -102300334 - AluSg/x SINE Alu 0 312 121 887 248 74 21 chr11 46483211 46483453 -102300019 + MIR SINE MIR 8 262 0 1997 129 13 16 chr11 46483512 46483822 -102299650 - AluSx SINE Alu -3 309 1 1747 279 103 65 chr11 46484170 46485813 -102297659 + L1MEc LINE L1 35 1740 -4656 2225 112 0 3 chr11 46485981 46486277 -102297195 + AluSx SINE Alu 1 295 -17 242 70 70 0 chr11 46486333 46486376 -102297096 + A-rich Low_complexity Low_complexity 2 47 0 575 275 98 99 chr11 46486386 46486520 -102296952 + L2 LINE L2 2620 2753 -560 1754 173 39 23 chr11 46486520 46486827 -102296645 - AluSx SINE Alu 0 312 1 575 275 98 99 chr11 46486827 46487200 -102296272 + L2 LINE L2 2753 3127 -186 773 113 0 0 chr11 46487256 46487362 -102296110 + FLAM_C SINE Alu 14 119 -24 193 372 0 11 chr11 46487362 46487456 -102296016 + L2 LINE L2 3221 3313 0 359 243 153 0 chr11 46488051 46488162 -102295310 + MIR SINE MIR 75 202 -60 194 366 73 0 chr11 46488533 46488615 -102294857 - L2 LINE L2 -213 3059 2972 21 36 0 0 chr11 46488735 46488763 -102294709 + AT_rich Low_complexity Low_complexity 1 28 0 280 240 289 10 chr11 46489346 46489450 -102294022 - MIR SINE MIR -95 167 35 197 146 0 73 chr11 46489472 46489513 -102293959 - L3 LINE CR1 -630 947 910 522 280 20 20 chr11 46490095 46490245 -102293227 - MIR3 SINE MIR -40 168 19 1708 175 11 25 chr11 46490286 46490571 -102292901 + AluJb SINE Alu 7 287 -25 249 165 24 35 chr11 46490571 46490656 -102292816 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 301 272 53 18 chr11 46491263 46491377 -102292095 - MIR SINE MIR -98 164 47 2437 83 3 0 chr11 46491379 46491680 -102291792 - AluSp SINE Alu -11 302 1 22 0 0 0 chr11 46493332 46493354 -102290118 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 46493788 46493809 -102289663 + AT_rich Low_complexity Low_complexity 1 21 0 502 236 8 41 chr11 46494362 46494485 -102288987 - L2 LINE L2 -2 3311 3193 22 0 0 0 chr11 46495454 46495476 -102287996 + AT_rich Low_complexity Low_complexity 1 22 0 188 0 0 69 chr11 46495862 46495891 -102287581 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 370 352 57 39 chr11 46495892 46496122 -102287350 + HAL1b LINE L1 1 234 -1114 701 220 24 30 chr11 46496141 46496309 -102287163 - MIR SINE MIR -21 241 75 1108 237 118 79 chr11 46496325 46497203 -102286269 + HAL1b LINE L1 242 1154 -194 1291 135 0 0 chr11 46497352 46497560 -102285912 + L1PA13 LINE L1 5954 6161 -2 196 248 133 57 chr11 46497605 46497710 -102285762 - MIR SINE MIR -115 147 35 479 232 22 55 chr11 46497718 46497899 -102285573 - HAL1b LINE L1 -32 1316 1142 182 333 11 81 chr11 46497963 46498050 -102285422 - MIR SINE MIR -164 98 18 312 128 2 0 chr11 46498832 46498889 -102284583 - THE1C LTR MaLR -209 166 117 2303 56 56 0 chr11 46500724 46501009 -102282463 + AluY SINE Alu 1 301 -10 1456 87 24 5 chr11 46501143 46501349 -102282123 - L1PA11 LINE L1 -1 6173 5964 334 280 100 0 chr11 46501594 46501694 -102281778 - L2 LINE L2 0 3272 3163 458 155 71 0 chr11 46501743 46501827 -102281645 - LTR51 LTR ERV1 0 671 582 * 1479 203 51 9 chr11 46501825 46502160 -102281312 - MER65C LTR ERV1 -112 349 1 558 324 154 20 chr11 46502207 46502301 -102281171 - L2 LINE L2 -201 3071 2991 1123 201 62 83 chr11 46502301 46502674 -102280798 - MLT1A1 LTR MaLR 0 365 1 558 324 154 20 chr11 46502674 46503041 -102280431 - L2 LINE L2 -281 2991 2543 693 268 66 66 chr11 46503478 46503844 -102279628 - MLT1J LTR MaLR -140 371 6 28 0 0 0 chr11 46504606 46504634 -102278838 + AT_rich Low_complexity Low_complexity 1 28 0 2425 77 0 3 chr11 46504655 46504965 -102278507 - AluY SINE Alu -1 310 2 252 0 0 0 chr11 46505045 46505073 -102278399 + (TA)n Simple_repeat Simple_repeat 2 29 0 1682 149 35 28 chr11 46505073 46505361 -102278111 - AluJo SINE Alu -18 294 5 255 294 59 15 chr11 46506319 46506455 -102277017 + HAL1 LINE L1 177 318 -2189 849 238 127 68 chr11 46506755 46507470 -102276002 + HAL1 LINE L1 884 1640 -867 751 108 36 43 chr11 46507519 46507658 -102275814 + L1MC3 LINE L1 7503 7640 -145 602 315 74 29 chr11 46507666 46508044 -102275428 - LTR16A LTR ERVL -55 395 1 2143 145 13 33 chr11 46508387 46508682 -102274790 - Tigger3(Golem) DNA MER2_type -1 3027 2740 1412 194 76 14 chr11 46508682 46508971 -102274501 + AluJo SINE Alu 1 307 -5 2143 145 13 33 chr11 46508971 46509069 -102274403 - Tigger3(Golem) DNA MER2_type -288 2740 2642 2095 112 3 53 chr11 46509292 46509615 -102273857 - AluSx SINE Alu -5 307 1 2499 61 0 3 chr11 46510172 46510483 -102272989 - AluY SINE Alu -1 310 1 2114 115 24 3 chr11 46510681 46510976 -102272496 - AluSx SINE Alu -11 301 1 1856 138 69 3 chr11 46511597 46511794 -102271678 - AluJb SINE Alu 0 330 105 333 0 0 0 chr11 46511794 46511831 -102271641 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1856 138 69 3 chr11 46511831 46511944 -102271528 - AluJb SINE Alu -225 105 1 349 241 278 0 chr11 46511993 46512101 -102271371 + MIR SINE MIR 29 166 -96 381 331 38 15 chr11 46512146 46512279 -102271193 - MIR SINE MIR -108 154 19 236 296 81 75 chr11 46512953 46513139 -102270333 + L2 LINE L2 3009 3195 -118 2057 272 92 55 chr11 46513164 46513964 -102269508 - L2 LINE L2 -2 3311 2542 1961 138 31 0 chr11 46513964 46514254 -102269218 + AluSq SINE Alu 1 299 -14 2057 272 92 55 chr11 46514254 46514343 -102269129 - L2 LINE L2 -771 2542 2458 254 29 29 0 chr11 46514343 46514378 -102269094 + (TG)n Simple_repeat Simple_repeat 2 37 0 2057 272 92 55 chr11 46514378 46514731 -102268741 - L2 LINE L2 -855 2458 1923 415 213 19 56 chr11 46514705 46514813 -102268659 + L2 LINE L2 3210 3313 0 * 286 259 177 44 chr11 46514824 46514982 -102268490 - L2 LINE L2 -5 3308 3130 8809 40 0 1 chr11 46515581 46517417 -102266055 - L1PA5 LINE L1 -6 6148 4307 1675 36 0 0 chr11 46517420 46517614 -102265858 + L1P LINE L1 4078 4271 -1875 41 36 0 0 chr11 46518111 46518166 -102265306 + AT_rich Low_complexity Low_complexity 1 55 0 2302 84 13 0 chr11 46518199 46518507 -102264965 - AluSx SINE Alu 0 312 1 2240 80 33 13 chr11 46520204 46520506 -102262966 + AluSg SINE Alu 1 308 -2 1649 176 0 28 chr11 46520709 46521023 -102262449 - AluJo SINE Alu 0 308 3 204 97 0 0 chr11 46521028 46521059 -102262413 + (T)n Simple_repeat Simple_repeat 1 31 0 1312 160 8 27 chr11 46522612 46522875 -102260597 - L1MB8 LINE L1 0 6178 5921 829 289 93 22 chr11 46522979 46523387 -102260085 - L2 LINE L2 -556 2758 2322 774 158 0 0 chr11 46523612 46523732 -102259740 + AluJo SINE Alu 16 135 -177 2095 93 0 7 chr11 46523732 46524002 -102259470 + AluSq SINE Alu 1 268 -45 481 277 43 7 chr11 46524040 46524181 -102259291 - L2 LINE L2 -543 2771 2626 28 0 0 0 chr11 46524583 46524611 -102258861 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr11 46525387 46525428 -102258044 + (TG)n Simple_repeat Simple_repeat 2 42 0 2024 176 19 3 chr11 46525605 46525964 -102257508 - MLT1A1 LTR MaLR 0 365 1 188 269 84 84 chr11 46526137 46526256 -102257216 - L2 LINE L2 0 3272 3154 772 272 51 55 chr11 46526300 46526557 -102256915 + MIR SINE MIR 2 257 -5 298 162 54 27 chr11 46526634 46526708 -102256764 - MLT1L LTR MaLR -11 604 529 481 219 96 34 chr11 46526732 46526910 -102256562 - L2 LINE L2 0 3313 3125 333 257 188 0 chr11 46527276 46527420 -102256052 - MIR SINE MIR -4 258 88 781 180 0 0 chr11 46528658 46528786 -102254686 - FLAM_A SINE Alu -5 128 1 2276 119 0 0 chr11 46529222 46529534 -102253938 - AluSx SINE Alu 0 312 1 353 250 25 0 chr11 46529593 46529713 -102253759 - L1ME4a LINE L1 -11 6110 5988 24 0 0 0 chr11 46530526 46530550 -102252922 + AT_rich Low_complexity Low_complexity 1 24 0 343 314 96 19 chr11 46531264 46531420 -102252052 - MIR3 SINE MIR -10 198 31 2380 85 0 0 chr11 46532171 46532465 -102251007 - AluSx SINE Alu -18 294 1 3152 146 6 32 chr11 46532735 46533153 -102250319 - MER72 LTR ERV1 0 722 319 2540 86 21 24 chr11 46533153 46533527 -102249945 + THE1C LTR MaLR 3 375 0 3152 146 6 32 chr11 46533527 46533637 -102249835 - MER72 LTR ERV1 -403 319 208 1678 161 21 10 chr11 46533639 46533930 -102249542 - AluJo SINE Alu -16 296 3 186 43 0 0 chr11 46533944 46533967 -102249505 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 653 259 8 0 chr11 46533973 46534104 -102249368 - AluJb SINE Alu -44 268 137 208 200 30 130 chr11 46534450 46534550 -102248922 + MIR SINE MIR 94 183 -79 202 350 10 10 chr11 46534561 46534658 -102248814 + MIR SINE MIR 160 256 -6 4486 163 53 21 chr11 46535927 46536859 -102246613 - L1MB5 LINE L1 -6 6168 5208 713 120 9 0 chr11 46536869 46536977 -102246495 - THE1C LTR MaLR 0 375 267 2022 138 13 0 chr11 46538088 46538386 -102245086 + AluJb SINE Alu 1 302 -10 500 169 0 22 chr11 46539002 46539091 -102244381 + FLAM_C SINE Alu 35 121 -22 252 0 0 0 chr11 46539091 46539119 -102244353 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 186 43 0 0 chr11 46541008 46541031 -102242441 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 23 54 0 0 chr11 46541158 46541195 -102242277 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr11 46542751 46542778 -102240694 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr11 46542888 46542916 -102240556 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 46544127 46544151 -102239321 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr11 46544214 46544252 -102239220 + AT_rich Low_complexity Low_complexity 1 38 0 195 129 0 0 chr11 46544683 46544714 -102238758 + (T)n Simple_repeat Simple_repeat 1 31 0 271 138 0 35 chr11 46545363 46545421 -102238051 + L1MA7 LINE L1 6227 6282 -9 59 0 0 0 chr11 46545424 46545483 -102237989 + AT_rich Low_complexity Low_complexity 1 59 0 229 255 29 49 chr11 46546733 46546835 -102236637 + MIR SINE MIR 122 221 -41 455 296 43 0 chr11 46546891 46547006 -102236466 + MIR3 SINE MIR 81 200 -8 2235 119 0 0 chr11 46547449 46547760 -102235712 - AluSq SINE Alu -2 311 1 261 143 6 50 chr11 46548184 46548345 -102235127 - HERV17 LTR ERV1 -7761 865 712 407 236 112 0 chr11 46548849 46548938 -102234534 + MIR3 SINE MIR 84 182 -26 879 106 16 0 chr11 46549667 46549790 -102233682 - L1PB4 LINE L1 -12 6144 6020 2132 113 0 0 chr11 46549905 46550228 -102233244 + AluSx SINE Alu 1 323 0 2338 96 3 3 chr11 46550448 46550761 -102232711 + AluSp SINE Alu 1 313 0 263 247 65 21 chr11 46550933 46551026 -102232446 - L1MC4 LINE L1 -565 7477 7381 735 218 48 75 chr11 46551030 46551178 -102232294 - L1MC4 LINE L1 -734 7308 7170 2332 99 0 0 chr11 46551178 46551471 -102232001 + AluSx SINE Alu 1 293 -19 735 218 48 75 chr11 46551471 46551616 -102231856 - L1MC4 LINE L1 -872 7170 7023 26 64 0 0 chr11 46552022 46552069 -102231403 + AT_rich Low_complexity Low_complexity 1 47 0 1786 149 0 88 chr11 46552131 46552459 -102231013 - AluJb SINE Alu -12 300 2 2260 104 0 10 chr11 46553037 46553344 -102230128 + AluSx SINE Alu 1 304 -8 200 275 138 9 chr11 46554401 46554510 -102228962 - MIR SINE MIR -8 254 132 2027 128 60 37 chr11 46554567 46554919 -102228553 - THE1B LTR MaLR 0 364 5 30 45 0 0 chr11 46554944 46554988 -102228484 + AT_rich Low_complexity Low_complexity 1 44 0 536 262 78 7 chr11 46555957 46556098 -102227374 - L2 LINE L2 -2 3311 3161 2952 3 0 0 chr11 46556098 46556415 -102227057 + AluYb8 SINE Alu 1 317 -1 403 328 61 6 chr11 46557108 46557288 -102226184 - ERVL LTR ERVL -5073 691 502 228 238 48 0 chr11 46557738 46557801 -102225671 - LTR50 LTR ERVL 0 795 730 1666 179 0 62 chr11 46558470 46558642 -102224830 - AluJb SINE Alu -7 305 161 1961 138 0 20 chr11 46558642 46558946 -102224526 - AluSx SINE Alu -14 298 1 1666 179 0 62 chr11 46558946 46559098 -102224374 - AluJb SINE Alu -151 161 1 557 244 39 94 chr11 46559762 46560070 -102223402 - MER31-int LTR ERV1 -985 3951 3661 2203 234 78 73 chr11 46560191 46560781 -102222691 - MLT1H1 LTR MaLR 0 555 3 210 134 45 0 chr11 46562335 46562402 -102221070 + (TA)n Simple_repeat Simple_repeat 1 70 0 1262 249 95 2 chr11 46563224 46563830 -102219642 - L1MEc LINE L1 -3524 2691 2072 1310 246 123 54 chr11 46563836 46564588 -102218884 - L1MEc LINE L1 -4580 1816 997 2218 70 28 0 chr11 46564588 46564873 -102218599 - AluY SINE Alu -18 293 1 1310 246 123 54 chr11 46564873 46564971 -102218501 - L1MEc LINE L1 -5399 997 907 910 227 15 103 chr11 46565006 46565279 -102218193 - L1MEc LINE L1 -6112 284 36 242 306 157 16 chr11 46566758 46566879 -102216593 - MIR3 SINE MIR -56 152 15 23 54 0 0 chr11 46567043 46567080 -102216392 + AT_rich Low_complexity Low_complexity 1 37 0 502 200 0 0 chr11 46567113 46567198 -102216274 - AluSg/x SINE Alu -22 287 203 3181 118 49 48 chr11 46567198 46567766 -102215706 - LTR12 LTR ERV1 -133 581 13 1488 122 0 14 chr11 46567766 46567979 -102215493 - AluSq SINE Alu -95 218 9 450 216 93 25 chr11 46568945 46569107 -102214365 + Charlie8 DNA MER1_type 92 264 -2153 1755 168 3 26 chr11 46569194 46569498 -102213974 + AluJo SINE Alu 2 298 -14 440 237 15 17 chr11 46569813 46569973 -102213499 - L1ME3 LINE L1 -150 6020 5863 2201 120 0 7 chr11 46571430 46571730 -102211742 + AluSx SINE Alu 1 298 -14 891 141 6 55 chr11 46571730 46571893 -102211579 + AluSg/x SINE Alu 132 286 -24 1685 181 20 7 chr11 46573012 46573305 -102210167 - AluJo SINE Alu -15 297 1 29 0 0 0 chr11 46574055 46574084 -102209388 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 46574379 46574400 -102209072 + AT_rich Low_complexity Low_complexity 1 21 0 2140 102 0 14 chr11 46574459 46574752 -102208720 - AluSx SINE Alu -9 303 15 21 0 0 0 chr11 46574847 46574868 -102208604 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 46575042 46575073 -102208399 + AT_rich Low_complexity Low_complexity 1 31 0 562 257 139 63 chr11 46575330 46575889 -102207583 + MLT1G1 LTR MaLR 1 555 0 664 261 48 34 chr11 46575999 46576290 -102207182 + L1M4 LINE L1 5290 5584 -594 836 205 0 6 chr11 46576485 46576646 -102206826 + Tigger7 DNA MER2_type 1 160 -545 434 144 100 0 chr11 46576678 46576768 -102206704 + Tigger7 DNA MER2_type 2389 2487 0 249 294 98 0 chr11 46577172 46577274 -102206198 + L1ME4a LINE L1 5506 5617 -504 * 1440 155 80 54 chr11 46577266 46577311 -102206161 + L1ME1 LINE L1 4334 4376 -1770 204 40 0 0 chr11 46577311 46577336 -102206136 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1758 150 11 4 chr11 46577339 46577612 -102205860 - AluSx SINE Alu -37 275 1 1440 155 80 54 chr11 46577612 46577988 -102205484 + L1ME1 LINE L1 4377 4770 -1376 3849 127 64 101 chr11 46578056 46578959 -102204513 - MER21A LTR ERV1 -28 903 34 692 223 17 6 chr11 46578959 46579134 -102204338 + L1ME1 LINE L1 4917 5093 -1053 41893 41 4 2 chr11 46579135 46585276 -102198196 - L1PA4 LINE L1 0 6155 1 948 156 45 16 chr11 46585284 46585527 -102197945 + L1ME1 LINE L1 5081 5330 -816 1967 211 31 39 chr11 46585534 46586078 -102197394 + LTR55 LTR ERV 3 542 -6 249 135 0 169 chr11 46586084 46586173 -102197299 + L1ME1 LINE L1 5333 5406 -756 2078 198 129 26 chr11 46586234 46586577 -102196895 + L1ME1 LINE L1 5421 5727 -439 2035 151 0 0 chr11 46586577 46586876 -102196596 + AluSx SINE Alu 1 299 -13 2078 198 129 26 chr11 46586876 46587119 -102196353 + L1ME1 LINE L1 5727 6068 -98 842 156 15 7 chr11 46587266 46587401 -102196071 + BC200 scRNA scRNA 2 137 -63 487 226 116 6 chr11 46587403 46587584 -102195888 + L1ME4a LINE L1 5661 5861 -260 854 185 0 73 chr11 46587788 46587934 -102195538 + FRAM SINE Alu 1 133 -169 1771 141 0 22 chr11 46587934 46588112 -102195360 - AluSx SINE Alu -13 299 127 369 0 0 0 chr11 46588112 46588153 -102195319 + (TG)n Simple_repeat Simple_repeat 2 42 0 1771 141 0 22 chr11 46588153 46588244 -102195228 - AluSx SINE Alu -185 127 36 854 185 0 73 chr11 46588244 46588275 -102195197 + FRAM SINE Alu 133 165 -1 1964 115 3 61 chr11 46588821 46589134 -102194338 - AluSx SINE Alu -17 295 1 739 191 23 0 chr11 46589135 46589266 -102194206 - AluJo SINE Alu -178 134 1 4690 140 20 24 chr11 46589403 46589581 -102193891 - LTR39 LTR ERV1 0 783 606 2095 103 43 17 chr11 46589581 46589883 -102193589 - AluSg SINE Alu 0 310 1 4690 140 20 24 chr11 46589883 46590490 -102192982 - LTR39 LTR ERV1 -177 606 1 1731 160 0 0 chr11 46590989 46591251 -102192221 - AluSx SINE Alu -48 264 3 263 263 163 0 chr11 46591352 46591432 -102192040 - MIR SINE MIR -91 171 79 246 128 0 0 chr11 46591487 46591526 -102191946 + (CA)n Simple_repeat Simple_repeat 2 40 0 586 281 33 38 chr11 46591697 46591832 -102191640 - MIR SINE MIR -31 231 96 2457 205 120 7 chr11 46591832 46592417 -102191055 + MLT1E1 LTR MaLR 4 654 0 586 281 33 38 chr11 46592417 46592491 -102190981 - MIR SINE MIR -166 96 23 256 24 49 0 chr11 46592646 46592687 -102190785 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 11836 32 1 0 chr11 46592687 46594852 -102188620 - L1PA3 LINE L1 -13 6142 3973 8009 30 0 1 chr11 46594852 46595879 -102187593 + L1PA3 LINE L1 2941 3966 -2180 2271 107 0 7 chr11 46597235 46597534 -102185938 - AluSq SINE Alu -16 297 1 29 60 0 0 chr11 46597954 46598004 -102185468 + AT_rich Low_complexity Low_complexity 1 50 0 325 217 83 122 chr11 46598321 46598501 -102184971 + L1MC4 LINE L1 5761 5933 -1875 2018 194 37 82 chr11 46599363 46599465 -102184007 + L1MC4 LINE L1 6865 6970 -1072 2050 120 20 0 chr11 46599465 46599757 -102183715 + AluSx SINE Alu 1 298 -14 2018 194 37 82 chr11 46599757 46600354 -102183118 + L1MC4 LINE L1 6970 7784 -258 1014 149 25 106 chr11 46600395 46600481 -102182991 - Charlie1 DNA MER1_type 0 2761 2670 2502 65 3 20 chr11 46600481 46600822 -102182650 - L1PA7 LINE L1 0 6154 5820 1014 149 25 106 chr11 46600822 46601056 -102182416 - Charlie1 DNA MER1_type -91 2670 2467 1630 207 73 5 chr11 46601058 46601368 -102182104 - LTR2 LTR ERV1 0 449 107 414 0 0 0 chr11 46601368 46601414 -102182058 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1630 207 73 5 chr11 46601414 46601485 -102181987 - LTR2 LTR ERV1 -342 107 42 2048 209 20 12 chr11 46601565 46602273 -102181199 - HERVE LTR ERV1 -2 7811 7020 1076 191 10 10 chr11 46602361 46602565 -102180907 - HERVE LTR ERV1 -2131 6295 6092 3297 190 69 13 chr11 46602589 46603356 -102180116 - Charlie1 DNA MER1_type -299 2462 1653 1240 142 9 32 chr11 46603510 46603728 -102179744 + AluSg SINE Alu 3 215 -95 1661 11 0 0 chr11 46603937 46604119 -102179353 - AluYa5 SINE Alu -8 303 122 586 347 60 13 chr11 46604379 46604679 -102178793 - L2 LINE L2 -382 2932 2619 790 310 40 40 chr11 46604778 46605149 -102178323 - L2 LINE L2 -2810 504 134 2205 108 0 3 chr11 46606795 46607101 -102176371 - AluSx SINE Alu -7 305 1 788 129 17 0 chr11 46610772 46610888 -102172584 + FLAM_C SINE Alu 1 118 -15 22 80 0 0 chr11 46610888 46610938 -102172534 + AT_rich Low_complexity Low_complexity 1 50 0 231 36 0 0 chr11 46611418 46611446 -102172026 + (TG)n Simple_repeat Simple_repeat 2 29 0 240 394 0 0 chr11 46612610 46612681 -102170791 + L2 LINE L2 3148 3218 -54 222 337 68 68 chr11 46612716 46613205 -102170267 + L2 LINE L2 2184 2672 -642 575 185 59 44 chr11 46613282 46613417 -102170055 - L2 LINE L2 -14 3299 3163 978 277 106 35 chr11 46613446 46613901 -102169571 - L2 LINE L2 -598 2716 2230 462 271 129 0 chr11 46613929 46614084 -102169388 - MIR SINE MIR 0 262 88 2210 81 0 7 chr11 46614199 46614507 -102168965 + AluSg SINE Alu 1 306 0 23 33 0 0 chr11 46615102 46615132 -102168340 + AT_rich Low_complexity Low_complexity 1 30 0 1109 108 18 0 chr11 46615554 46615721 -102167751 - L1PA15 LINE L1 -4 6161 5992 1695 123 7 60 chr11 46616108 46616408 -102167064 - AluSx SINE Alu -28 284 1 257 217 147 0 chr11 46616480 46616610 -102166862 - L1ME4a LINE L1 -83 6038 5880 2468 144 55 0 chr11 46616982 46617386 -102166086 - MSTB LTR MaLR 0 426 1 342 80 0 0 chr11 46617739 46617789 -102165683 + (GA)n Simple_repeat Simple_repeat 1 50 0 373 209 22 0 chr11 46618388 46618479 -102164993 - MIR SINE MIR -120 142 50 1607 196 0 0 chr11 46618479 46618773 -102164699 - AluJo SINE Alu 0 305 12 381 344 43 13 chr11 46618799 46619213 -102164259 + LTR16B LTR ERVL 8 463 -1 4426 82 39 46 chr11 46619406 46619543 -102163929 + MER4A LTR ERV1 1 138 -526 2392 92 0 0 chr11 46619543 46619868 -102163604 + AluSx SINE Alu 1 325 0 4426 82 39 46 chr11 46619868 46620396 -102163076 + MER4A LTR ERV1 138 664 0 229 306 35 12 chr11 46620504 46620589 -102162883 + MLT1J2 LTR MaLR 2 88 -362 368 224 50 60 chr11 46620686 46620854 -102162618 + MLT1J LTR MaLR 232 460 -51 2041 145 10 0 chr11 46621732 46622029 -102161443 + AluSx SINE Alu 1 300 -12 1770 138 7 3 chr11 46622075 46622358 -102161114 - L1PA15 LINE L1 0 6165 5882 1960 177 85 28 chr11 46622380 46622814 -102160658 + LTR2B LTR ERV1 32 490 0 1043 100 31 0 chr11 46623072 46623232 -102160240 + MER41B LTR ERV1 1 165 -470 202 211 0 0 chr11 46623901 46623939 -102159533 + (CA)n Simple_repeat Simple_repeat 2 39 0 197 211 379 0 chr11 46626111 46626206 -102157266 - MIR SINE MIR -14 248 118 252 310 53 3 chr11 46626725 46626811 -102156661 - MIR SINE MIR -61 147 59 2111 138 0 10 chr11 46626978 46627290 -102156182 + AluSx SINE Alu 1 309 -3 490 209 129 19 chr11 46627485 46627804 -102155668 - MLT1J2 LTR MaLR 0 450 37 2346 101 0 7 chr11 46629054 46629361 -102154111 + AluSx SINE Alu 5 309 -3 898 185 48 16 chr11 46631002 46631191 -102152281 - MER3 DNA MER1_type -8 201 7 575 266 55 25 chr11 46631565 46631764 -102151708 + MIR SINE MIR 37 241 -21 250 234 153 18 chr11 46634732 46634843 -102148629 - L1ME LINE L1 -216 5905 5780 231 297 31 0 chr11 46634857 46634921 -102148551 - L2 LINE L2 -13 3300 3235 664 253 91 78 chr11 46634997 46635272 -102148200 - L1ME LINE L1 -430 5691 5408 2418 97 0 6 chr11 46635272 46635583 -102147889 - AluSx SINE Alu -3 309 1 664 253 91 78 chr11 46635583 46635702 -102147770 - L1ME LINE L1 -713 5408 5292 341 282 88 37 chr11 46636111 46636327 -102147145 - MIR SINE MIR -33 229 3 601 262 80 63 chr11 46636419 46636705 -102146767 - MER102b DNA MER1_type -35 306 16 196 284 80 23 chr11 46637090 46637178 -102146294 + L2 LINE L2 3134 3226 -46 1756 147 87 82 chr11 46638453 46638587 -102144885 - Charlie1a DNA MER1_type -1340 1421 1289 2441 95 0 0 chr11 46638587 46638893 -102144579 + AluSg SINE Alu 1 306 -4 1756 147 87 82 chr11 46638893 46639220 -102144252 - Charlie1a DNA MER1_type -1472 1289 958 469 171 34 0 chr11 46641874 46641962 -102141510 - Charlie1a DNA MER1_type -481 974 884 1197 117 50 54 chr11 46641963 46642185 -102141287 + AluJo SINE Alu 86 306 -6 1178 177 13 13 chr11 46642189 46642415 -102141057 - Charlie1a DNA MER1_type -562 893 668 3404 58 21 12 chr11 46642415 46642808 -102140664 + MLT2A1 LTR ERVL 1 400 -44 288 0 0 0 chr11 46642808 46642840 -102140632 + (TG)n Simple_repeat Simple_repeat 2 33 0 3404 58 21 12 chr11 46642840 46642878 -102140594 + MLT2A1 LTR ERVL 400 436 -8 2817 214 76 20 chr11 46642874 46643515 -102139957 - Charlie1a DNA MER1_type -777 678 2 * 2333 126 25 3 chr11 46643542 46643898 -102139574 - THE1B LTR MaLR 0 364 1 254 143 32 48 chr11 46644202 46644265 -102139207 - L1MB1 LINE L1 -8 6181 6120 521 202 0 32 chr11 46645192 46645316 -102138156 + FLAM_A SINE Alu 20 139 -3 664 172 0 0 chr11 46645437 46645536 -102137936 - AluJ/FLAM SINE Alu -211 101 3 1140 193 28 0 chr11 46645797 46646010 -102137462 + MER20 DNA MER1_type 1 219 0 204 97 0 0 chr11 46647719 46647750 -102135722 + (TAA)n Simple_repeat Simple_repeat 2 32 0 476 295 76 31 chr11 46647755 46647979 -102135493 - MIR SINE MIR -6 256 23 1169 165 128 77 chr11 46648073 46648311 -102135161 - MER2 DNA MER2_type 0 345 84 2473 78 0 0 chr11 46648311 46648604 -102134868 - AluSc SINE Alu -16 293 1 1169 165 128 77 chr11 46648604 46648692 -102134780 - MER2 DNA MER2_type -261 84 2 288 255 78 0 chr11 46649145 46649247 -102134225 + L2 LINE L2 2909 3018 -254 463 254 87 0 chr11 46649748 46649865 -102133607 + MIR SINE MIR 78 210 -52 2144 114 13 0 chr11 46649865 46650163 -102133309 + AluSq SINE Alu 3 304 -9 463 254 87 0 chr11 46650163 46650183 -102133289 + MIR SINE MIR 210 227 -35 554 288 28 17 chr11 46650309 46650486 -102132986 - MARNA DNA Mariner -123 463 285 298 269 199 7 chr11 46650532 46650673 -102132799 - MARNA DNA Mariner -411 175 8 1866 129 7 40 chr11 46650785 46651088 -102132384 + AluJb SINE Alu 1 293 -19 2329 94 0 28 chr11 46651092 46651410 -102132062 + AluY SINE Alu 2 310 -1 1366 284 0 106 chr11 46651573 46651904 -102131568 + AluSq SINE Alu 1 296 -7 2652 118 15 0 chr11 46652102 46652492 -102130980 - L1PA13 LINE L1 -5 6158 5763 188 233 23 0 chr11 46653502 46653545 -102129927 + L2 LINE L2 3221 3264 -8 1827 170 0 13 chr11 46654161 46654461 -102129011 + AluJo SINE Alu 1 296 -16 180 0 0 0 chr11 46654821 46654841 -102128631 + (A)n Simple_repeat Simple_repeat 1 20 0 202 278 175 10 chr11 46657031 46657128 -102126344 - MER5A DNA MER1_type -22 167 55 366 243 9 37 chr11 46657475 46657582 -102125890 - MER5A DNA MER1_type -43 146 43 301 207 118 59 chr11 46657808 46657943 -102125529 + MER5A DNA MER1_type 47 189 0 * 368 242 16 23 chr11 46657943 46658067 -102125405 + MIR SINE MIR 17 139 -123 359 246 230 0 chr11 46658929 46659104 -102124368 + MIR SINE MIR 37 250 -12 230 186 34 17 chr11 46659716 46659775 -102123697 + MER5A DNA MER1_type 129 188 -1 612 221 9 0 chr11 46659785 46659898 -102123574 + MER81 DNA DNA 1 114 0 566 256 80 28 chr11 46660046 46660222 -102123250 + LTR41 LTR ERVL 3 187 -586 278 294 12 0 chr11 46660296 46660381 -102123091 + ERVL LTR ERVL 549 634 -5130 2208 310 67 58 chr11 46660424 46661564 -102121908 + ERVL LTR ERVL 753 1910 -3854 2108 81 59 0 chr11 46661564 46661837 -102121635 - AluY SINE Alu -22 289 1 2208 310 67 58 chr11 46661837 46662102 -102121370 + ERVL LTR ERVL 1910 2171 -3593 1593 121 13 4 chr11 46662104 46662343 -102121129 - Tigger5 DNA MER2_type -2 2321 2081 536 172 43 0 chr11 46662335 46662428 -102121044 - Tigger5 DNA MER2_type -2225 98 2 * 1637 244 21 33 chr11 46662428 46662858 -102120614 + ERVL LTR ERVL 2169 2593 -3171 2408 85 0 7 chr11 46662885 46663190 -102120282 + AluY SINE Alu 1 303 -8 1256 99 6 0 chr11 46663190 46663351 -102120121 + AluSg/x SINE Alu 134 295 -17 557 320 57 0 chr11 46663351 46663579 -102119893 + ERVL LTR ERVL 2615 2855 -2909 2563 262 87 14 chr11 46663608 46664344 -102119128 + ERVL LTR ERVL 4142 4931 -833 381 299 43 52 chr11 46664340 46664551 -102118921 + ERVL LTR ERVL 5101 5309 -455 * 571 221 101 20 chr11 46664961 46665110 -102118362 + LTR41 LTR ERVL 7 167 -606 186 43 0 0 chr11 46665166 46665189 -102118283 + (TC)n Simple_repeat Simple_repeat 2 24 0 1642 100 9 0 chr11 46665189 46665399 -102118073 - AluSg/x SINE Alu -32 280 69 1628 221 68 25 chr11 46665441 46665884 -102117588 + MLT1C LTR MaLR 6 467 0 607 240 19 114 chr11 46665958 46666142 -102117330 + LTR41 LTR ERVL 480 680 -93 2961 116 33 2 chr11 46666142 46666591 -102116881 + MER4C LTR ERV1 2 464 -1 607 240 19 114 chr11 46666591 46666667 -102116805 + LTR41 LTR ERVL 680 707 -66 1989 142 3 37 chr11 46666667 46666990 -102116482 - AluSx SINE Alu 0 312 1 607 240 19 114 chr11 46666990 46667045 -102116427 + LTR41 LTR ERVL 707 766 -7 257 318 39 8 chr11 46667256 46667385 -102116087 + MER5A DNA MER1_type 1 133 -56 * 294 192 42 108 chr11 46667289 46667387 -102116085 - MER5A DNA MER1_type -22 167 77 1721 91 141 8 chr11 46667387 46667650 -102115822 - AluSx SINE Alu -13 299 2 294 192 42 108 chr11 46667650 46667671 -102115801 - MER5A DNA MER1_type -112 77 56 291 218 24 147 chr11 46668508 46668599 -102114873 - MIR SINE MIR 0 262 200 3012 6 0 0 chr11 46668599 46668917 -102114555 - AluYb8 SINE Alu 0 318 1 291 218 24 147 chr11 46668917 46668995 -102114477 - MIR SINE MIR -62 200 114 213 366 0 12 chr11 46669275 46669357 -102114115 + MIR SINE MIR 26 106 -156 456 329 15 0 chr11 46669402 46669539 -102113933 - L2 LINE L2 0 3272 3134 1020 232 99 81 chr11 46669693 46670038 -102113434 - MLT1H LTR MaLR -198 351 1 292 105 0 0 chr11 46670162 46670200 -102113272 + U2 snRNA snRNA 1 38 -150 2113 104 10 20 chr11 46670672 46670969 -102112503 - AluSq SINE Alu -17 296 3 232 189 11 11 chr11 46671637 46671727 -102111745 + A-rich Low_complexity Low_complexity 1 90 0 186 43 0 0 chr11 46671866 46671889 -102111583 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 419 289 99 41 chr11 46671921 46672315 -102111157 + L1MEd LINE L1 544 960 -5159 2038 155 0 0 chr11 46672740 46673044 -102110428 - AluJb SINE Alu -8 304 1 473 264 51 71 chr11 46673094 46673529 -102109943 + L1MCc LINE L1 1088 1681 -4991 1762 118 4 4 chr11 46673529 46673775 -102109697 - AluSx SINE Alu -25 287 42 473 264 51 71 chr11 46673775 46673874 -102109598 + L1MCc LINE L1 1681 1780 -4892 313 292 0 0 chr11 46674057 46674170 -102109302 + C-rich Low_complexity Low_complexity 1 113 0 2971 152 121 38 chr11 46674584 46675261 -102108211 + L1MC2 LINE L1 5612 6344 0 494 257 94 103 chr11 46675786 46675933 -102107539 + L1MEd LINE L1 561 708 -5423 1889 153 3 3 chr11 46675933 46676220 -102107252 + AluJo SINE Alu 1 287 -25 494 257 94 103 chr11 46676220 46676480 -102106992 + L1MEd LINE L1 708 969 -5162 1919 141 0 11 chr11 46676480 46676764 -102106708 - AluJo SINE Alu -31 281 1 494 257 94 103 chr11 46676764 46676940 -102106532 + L1MEd LINE L1 969 1034 -5097 2113 108 13 16 chr11 46676940 46677247 -102106225 + AluSx SINE Alu 1 306 -6 494 257 94 103 chr11 46677247 46677527 -102105945 + L1MEd LINE L1 1034 1315 -4816 348 240 42 21 chr11 46677538 46677634 -102105838 - HsTC2 DNA Tc2 -2 1896 1799 2137 71 10 51 chr11 46677770 46678116 -102105356 + AluSx SINE Alu 1 334 0 271 277 76 28 chr11 46678376 46678590 -102104882 + L1M1 LINE L1 3492 3719 -3846 487 265 93 29 chr11 46678603 46678882 -102104590 + L1M1 LINE L1 3751 4047 -3518 680 131 0 0 chr11 46678915 46679014 -102104458 + AluJ/FLAM SINE Alu 2 100 -212 667 197 23 0 chr11 46679015 46679147 -102104325 + AluJo/FRAM SINE Alu 165 299 -13 2488 69 3 3 chr11 46679195 46679501 -102103971 + AluSg SINE Alu 1 306 -4 1372 164 73 31 chr11 46679542 46679829 -102103643 + AluJo SINE Alu 1 299 -13 1603 198 86 68 chr11 46679859 46680348 -102103124 - MLT1D LTR MaLR -7 498 1 403 221 88 15 chr11 46680361 46680497 -102102975 - MIR SINE MIR -27 235 90 2103 222 100 19 chr11 46680561 46681182 -102102290 - L1MC4 LINE L1 0 8042 7372 888 266 150 27 chr11 46681445 46682031 -102101441 + L1M1 LINE L1 4543 5200 -2365 502 178 9 19 chr11 46682095 46682202 -102101270 - AluSc SINE Alu 0 309 204 288 0 0 0 chr11 46682373 46682405 -102101067 + (CA)n Simple_repeat Simple_repeat 2 33 0 2007 149 3 0 chr11 46682539 46682828 -102100644 - AluSx SINE Alu -17 295 6 1366 142 32 5 chr11 46683115 46683333 -102100139 + AluJb SINE Alu 84 307 -5 1004 243 149 19 chr11 46684117 46684492 -102098980 - MLT1L LTR MaLR -55 560 137 11922 133 27 30 chr11 46685058 46685601 -102097871 + L1MA1 LINE L1 3018 3561 -2741 2722 17 0 0 chr11 46685601 46685894 -102097578 + AluYa5 SINE Alu 1 293 -18 11922 133 27 30 chr11 46685894 46686166 -102097306 + L1MA1 LINE L1 3561 3832 -2470 1494 97 31 18 chr11 46686166 46686393 -102097079 + MER30 DNA MER1_type 1 230 0 11922 133 27 30 chr11 46686393 46688873 -102094599 + L1MA1 LINE L1 3832 6302 0 30 0 0 0 chr11 46688873 46688903 -102094569 + AT_rich Low_complexity Low_complexity 1 30 0 732 294 47 13 chr11 46688903 46689138 -102094334 + LTR16C LTR ERVL 107 349 -142 1245 67 51 6 chr11 46689138 46689316 -102094156 - L1M1 LINE L1 -820 5482 5297 555 178 136 0 chr11 46689322 46689440 -102094032 + LTR16C LTR ERVL 358 491 0 599 324 89 34 chr11 46690811 46691404 -102092068 + L2 LINE L2 2340 2965 -349 762 265 60 20 chr11 46691458 46691707 -102091765 + MIR SINE MIR 4 262 0 263 352 11 0 chr11 46691724 46691812 -102091660 + L2 LINE L2 2991 3079 -193 6382 99 18 3 chr11 46691900 46692806 -102090666 - L1PA8 LINE L1 0 6172 5254 300 321 12 0 chr11 46692812 46692896 -102090576 + L2 LINE L2 3175 3259 -13 2403 89 17 14 chr11 46692901 46693248 -102090224 + L1PA13 LINE L1 5810 6157 -6 204 40 0 0 chr11 46693398 46693423 -102090049 + (GAA)n Simple_repeat Simple_repeat 2 26 0 2197 117 3 0 chr11 46693507 46693798 -102089674 - AluSq SINE Alu -21 292 1 1313 157 0 48 chr11 46693973 46694202 -102089270 - AluSx SINE Alu -94 218 1 1677 171 45 0 chr11 46694390 46694676 -102088796 - AluJo SINE Alu -13 299 1 398 250 85 64 chr11 46694790 46694978 -102088494 + MIR SINE MIR 20 211 -51 307 248 128 34 chr11 46695957 46696074 -102087398 + MIR3 SINE MIR 74 201 -7 21 36 0 0 chr11 46696549 46696577 -102086895 + AT_rich Low_complexity Low_complexity 1 28 0 256 301 98 14 chr11 46697652 46697795 -102085677 + Charlie8 DNA MER1_type 3 157 -2260 262 145 129 16 chr11 46697878 46697940 -102085532 + Charlie8 DNA MER1_type 1360 1428 -989 512 202 118 0 chr11 46698269 46698388 -102085084 - MIR SINE MIR -107 155 23 834 147 0 22 chr11 46698553 46698689 -102084783 + FLAM_A SINE Alu 1 133 0 411 21 0 0 chr11 46698689 46698737 -102084735 + (TA)n Simple_repeat Simple_repeat 2 49 0 1113 237 142 39 chr11 46698760 46699246 -102084226 - L2 LINE L2 -1 3312 2720 2043 126 0 7 chr11 46699246 46699578 -102083894 + AluSx SINE Alu 1 330 0 1113 237 142 39 chr11 46699578 46699886 -102083586 - L2 LINE L2 -593 2720 2445 236 263 213 12 chr11 46700227 46700387 -102083085 - MIR SINE MIR -70 192 1 2132 132 0 0 chr11 46700869 46701165 -102082307 - AluSx SINE Alu -16 296 1 200 308 155 25 chr11 46701309 46701612 -102081860 + L2 LINE L2 2703 3039 -274 183 225 157 11 chr11 46702295 46702384 -102081088 - MIR SINE MIR 0 262 161 26 30 0 0 chr11 46703245 46703278 -102080194 + AT_rich Low_complexity Low_complexity 1 33 0 182 149 0 85 chr11 46703546 46703593 -102079879 + MIR SINE MIR 218 260 -2 320 272 142 12 chr11 46705259 46705428 -102078044 - MIR SINE MIR -37 225 35 248 245 92 10 chr11 46708823 46708921 -102074551 + MIR SINE MIR 38 143 -65 284 320 75 41 chr11 46709771 46709862 -102073610 - L1ME4a LINE L1 -56 6065 5979 1757 135 14 7 chr11 46709862 46710143 -102073329 - AluJb SINE Alu -29 283 1 284 320 75 41 chr11 46710143 46710370 -102073102 - L1ME4a LINE L1 -142 5979 5736 417 217 35 56 chr11 46710510 46710653 -102072819 - MIR SINE MIR -10 252 113 690 215 17 41 chr11 46710683 46710855 -102072617 - L1ME4a LINE L1 -430 5691 5524 307 188 156 5 chr11 46712109 46712205 -102071267 + MIR SINE MIR 41 145 -73 1764 161 3 58 chr11 46712305 46712490 -102070982 - AluJo SINE Alu -1 311 117 180 0 0 0 chr11 46712490 46712510 -102070962 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2150 114 7 0 chr11 46712513 46712802 -102070670 - AluSq SINE Alu -22 291 1 1764 161 3 58 chr11 46712802 46712941 -102070531 - AluJo SINE Alu -197 115 1 282 316 11 11 chr11 46713364 46713431 -102070041 + MIR3 SINE MIR 90 159 -49 2294 158 54 5 chr11 46713431 46713837 -102069635 + MSTB LTR MaLR 1 426 0 282 316 11 11 chr11 46713837 46713864 -102069608 + MIR3 SINE MIR 158 184 -24 252 86 0 0 chr11 46713903 46713938 -102069534 + (CA)n Simple_repeat Simple_repeat 1 35 0 503 264 66 30 chr11 46713938 46714105 -102069367 + MER112 DNA MER1_type 88 260 0 335 188 50 40 chr11 46714611 46714712 -102068760 + MIR SINE MIR 28 129 -133 2006 155 0 7 chr11 46715355 46715665 -102067807 - AluSx SINE Alu -4 308 1 245 267 27 13 chr11 46715996 46716071 -102067401 - MIR SINE MIR -71 137 62 272 209 12 0 chr11 46717154 46717240 -102066232 + CT-rich Low_complexity Low_complexity 1 87 0 231 167 0 0 chr11 46717559 46717601 -102065871 + (CA)n Simple_repeat Simple_repeat 1 42 0 271 339 25 8 chr11 46718212 46718333 -102065139 - MIR3 SINE MIR -4 204 82 225 320 56 65 chr11 46718503 46718734 -102064738 + MIR SINE MIR 22 250 -12 799 166 0 58 chr11 46718747 46718886 -102064586 - FLAM_A SINE Alu -2 131 1 220 245 0 0 chr11 46719495 46719544 -102063928 - MIR SINE MIR -10 252 204 222 314 0 0 chr11 46719715 46719766 -102063706 - MIR SINE MIR -113 95 45 264 278 107 60 chr11 46720289 46720523 -102062949 - L2 LINE L2 -31 3241 2997 * 317 241 60 17 chr11 46720497 46720613 -102062859 - MIR3 SINE MIR -73 135 15 259 260 164 3 chr11 46720603 46720856 -102062616 + L2 LINE L2 1985 2336 -978 * 493 301 82 35 chr11 46720882 46721220 -102062252 - MLT1J1 LTR MaLR -40 410 54 2158 123 7 0 chr11 46721616 46721924 -102061548 + AluSx SINE Alu 1 310 -2 545 293 79 53 chr11 46722614 46722709 -102060763 + L2 LINE L2 2369 2460 -854 2042 131 10 0 chr11 46722709 46722999 -102060473 - AluSx SINE Alu -17 295 3 545 293 79 53 chr11 46722999 46723221 -102060251 + L2 LINE L2 2460 2694 -620 240 35 0 0 chr11 46723222 46723251 -102060221 + (TTA)n Simple_repeat Simple_repeat 1 29 0 866 142 0 0 chr11 46723254 46723374 -102060098 - FLAM_C SINE Alu -23 120 1 535 252 163 58 chr11 46723375 46723453 -102060019 + L2 LINE L2 2686 2754 -559 2324 73 3 17 chr11 46723453 46723753 -102059719 - AluY SINE Alu -15 296 1 535 252 163 58 chr11 46723753 46723959 -102059513 + L2 LINE L2 2754 3001 -312 684 216 29 86 chr11 46723994 46724239 -102059233 + MIR SINE MIR 29 259 -3 263 288 144 18 chr11 46724405 46724516 -102058956 + L2 LINE L2 3144 3268 -4 608 249 155 19 chr11 46724755 46724968 -102058504 + MIR SINE MIR 21 262 0 384 22 0 0 chr11 46725125 46725170 -102058302 + (TG)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr11 46725551 46725575 -102057897 + GC_rich Low_complexity Low_complexity 1 24 0 22 103 0 0 chr11 46725770 46725848 -102057624 + GC_rich Low_complexity Low_complexity 1 78 0 29 70 0 0 chr11 46726004 46726061 -102057411 + GC_rich Low_complexity Low_complexity 1 57 0 303 324 149 31 chr11 46726094 46726316 -102057156 + L1M2 LINE L1 449 696 -6153 23 68 0 0 chr11 46726556 46726600 -102056872 + GC_rich Low_complexity Low_complexity 1 44 0 1958 134 6 16 chr11 46728831 46729145 -102054327 + AluJb SINE Alu 1 311 -1 2873 179 72 9 chr11 46729424 46730023 -102053449 - Charlie1a DNA MER1_type -772 683 2 298 232 14 0 chr11 46730023 46730092 -102053380 + L1MC4 LINE L1 7833 7902 -140 1981 141 7 0 chr11 46730394 46730698 -102052774 - AluSx SINE Alu -6 306 1 2232 114 0 0 chr11 46730911 46731208 -102052264 + AluSx SINE Alu 1 297 -15 222 37 0 0 chr11 46732142 46732169 -102051303 + (A)n Simple_repeat Simple_repeat 1 27 0 1095 199 6 6 chr11 46732247 46732423 -102051049 + MER45A DNA AcHobo 2 177 -1 534 181 38 45 chr11 46732800 46732933 -102050539 - L2 LINE L2 0 3313 3182 1543 160 66 4 chr11 46733133 46733389 -102050083 + AluJb SINE Alu 12 283 -29 607 165 79 24 chr11 46733456 46733620 -102049852 - MER104 DNA Tc2 -5 175 3 500 164 10 67 chr11 46733901 46734005 -102049467 - Tigger7 DNA MER2_type -1 2490 2393 947 165 63 0 chr11 46734006 46734164 -102049308 - Tigger7 DNA MER2_type -2222 265 98 2441 92 0 6 chr11 46734167 46734481 -102048991 + AluSq SINE Alu 1 312 -1 2327 117 0 0 chr11 46734707 46735016 -102048456 + AluSx SINE Alu 1 309 -3 862 161 0 0 chr11 46736146 46736276 -102047196 - FLAM_A SINE Alu 0 133 4 322 232 61 50 chr11 46736423 46736522 -102046950 - L2 LINE L2 0 3272 3173 447 304 136 0 chr11 46738065 46738249 -102045223 - LTR16A LTR ERVL -241 209 1 286 218 201 0 chr11 46738688 46738783 -102044689 - AluSc SINE Alu -118 181 110 240 259 133 32 chr11 46738979 46739137 -102044335 + MLT1L LTR MaLR 204 377 -238 913 252 97 43 chr11 46739207 46739694 -102043778 - L2 LINE L2 -71 3242 2727 309 239 114 0 chr11 46739694 46739782 -102043690 + AluJb SINE Alu 91 188 -114 302 333 75 13 chr11 46740884 46741043 -102042429 - MIR SINE MIR -71 191 23 898 142 116 0 chr11 46742136 46742291 -102041181 + MER2 DNA MER2_type 1 173 -172 317 264 28 0 chr11 46742403 46742475 -102040997 + MER2 DNA MER2_type 269 342 -3 553 156 85 35 chr11 46742563 46742704 -102040768 - MER106B DNA MER1_type -9 1050 903 216 0 0 0 chr11 46744244 46744268 -102039204 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 2304 104 0 3 chr11 46744314 46744613 -102038859 + AluSx SINE Alu 1 298 -14 603 273 109 50 chr11 46744749 46745054 -102038418 - L2 LINE L2 -700 2614 2274 486 88 0 0 chr11 46745054 46745122 -102038350 + (TA)n Simple_repeat Simple_repeat 2 69 0 603 273 109 50 chr11 46745122 46745255 -102038217 - L2 LINE L2 -1040 2274 2150 1493 165 18 48 chr11 46745341 46745436 -102038036 - MER33 DNA MER1_type -2261 324 228 2439 75 0 10 chr11 46745436 46745744 -102037728 - AluY SINE Alu -6 305 1 1493 165 18 48 chr11 46745744 46745981 -102037491 - MER33 DNA MER1_type -2357 228 2 1079 200 47 28 chr11 46746067 46746282 -102037190 + MER20 DNA MER1_type 1 219 0 1546 269 49 65 chr11 46749191 46749782 -102033690 - MER21B LTR ERV1 -156 707 127 3632 147 51 12 chr11 46749782 46750429 -102033043 + L1MA4 LINE L1 5629 6300 0 1546 269 49 65 chr11 46750429 46750496 -102032976 - MER21B LTR ERV1 -736 127 60 634 363 62 11 chr11 46750699 46751195 -102032277 - L2 LINE L2 -219 3094 2569 435 235 151 24 chr11 46751319 46751485 -102031987 - MIR SINE MIR -8 254 68 288 320 70 19 chr11 46751485 46751641 -102031831 - L2 LINE L2 -856 2458 2295 203 214 0 0 chr11 46752420 46752462 -102031010 + L2 LINE L2 3229 3270 -2 350 286 197 26 chr11 46752491 46752695 -102030777 - MIR SINE MIR -12 250 14 2257 78 7 3 chr11 46752821 46753138 -102030334 + AluSp SINE Alu 1 318 0 324 0 0 0 chr11 46753652 46753688 -102029784 + (TA)n Simple_repeat Simple_repeat 1 36 0 6991 118 12 4 chr11 46754862 46756003 -102027469 - L1MA4A LINE L1 0 6303 5153 2305 97 0 0 chr11 46756123 46756422 -102027050 - AluY SINE Alu -11 300 2 725 234 51 0 chr11 46757494 46757669 -102025803 + MIR SINE MIR 7 190 -72 280 314 152 33 chr11 46758017 46758227 -102025245 + L2 LINE L2 3038 3272 0 228 321 92 0 chr11 46758500 46758609 -102024863 - L2 LINE L2 -212 3060 2942 438 318 90 10 chr11 46758834 46759035 -102024437 + MIR SINE MIR 7 223 -39 29 0 0 0 chr11 46759876 46759905 -102023567 + AT_rich Low_complexity Low_complexity 1 29 0 2703 101 8 0 chr11 46759905 46760271 -102023201 - L1PB1 LINE L1 -1 6150 5782 342 127 0 0 chr11 46760271 46760342 -102023130 + (TA)n Simple_repeat Simple_repeat 1 71 0 4374 180 5 4 chr11 46760343 46761322 -102022150 - L1PB1 LINE L1 -714 5437 4458 251 235 20 0 chr11 46761337 46761388 -102022084 - L2 LINE L2 -20 3252 3201 217 411 0 0 chr11 46763459 46763549 -102019923 - L2 LINE L2 -529 2785 2696 325 346 31 31 chr11 46764853 46765015 -102018457 + L3 LINE CR1 35 196 -1381 5460 45 2 0 chr11 46765618 46766239 -102017233 - L1PA5 LINE L1 -6 6148 5527 35 24 0 0 chr11 46766297 46766339 -102017133 + AT_rich Low_complexity Low_complexity 1 42 0 1985 158 0 22 chr11 46766532 46766848 -102016624 - AluJo SINE Alu -1 311 3 248 293 103 0 chr11 46766882 46766998 -102016474 + L2 LINE L2 3174 3301 -12 248 316 194 0 chr11 46767092 46767231 -102016241 + L3 LINE CR1 1277 1442 -135 834 224 117 75 chr11 46767234 46767542 -102015930 + MER102a DNA MER1_type 1 321 -9 1857 199 12 12 chr11 46767646 46767988 -102015484 - MLT1A1 LTR MaLR 0 365 24 1009 104 8 0 chr11 46767993 46768127 -102015345 + AluJb SINE Alu 1 135 -177 1942 152 0 0 chr11 46768127 46768423 -102015049 + AluJb SINE Alu 1 296 -16 2671 45 0 3 chr11 46769350 46769661 -102013811 - AluY SINE Alu -1 310 1 2781 10 3 0 chr11 46771416 46771718 -102011754 - AluYa5 SINE Alu -8 303 1 763 161 7 14 chr11 46774564 46774707 -102008765 - L1MB8 LINE L1 -2 6176 6035 24 53 0 0 chr11 46774715 46774753 -102008719 + AT_rich Low_complexity Low_complexity 1 38 0 5317 156 31 19 chr11 46778581 46779769 -102003703 - L1MB3 LINE L1 -1 6182 4975 575 293 121 17 chr11 46780078 46780310 -102003162 - MIR SINE MIR 0 262 7 286 286 114 29 chr11 46781616 46781756 -102001716 + L2 LINE L2 2686 2837 -477 1767 235 98 65 chr11 46782989 46783195 -102000277 - L1MD3 LINE L1 0 8039 7841 1677 170 37 0 chr11 46783195 46783497 -101999975 - AluJb SINE Alu 0 312 1 1767 235 98 65 chr11 46783497 46784102 -101999370 - L1MD3 LINE L1 -198 7841 7206 313 390 0 7 chr11 46784268 46784404 -101999068 + MIR3 SINE MIR 11 145 -63 1897 149 10 3 chr11 46784596 46784892 -101998580 + AluSx SINE Alu 2 299 -13 257 311 75 9 chr11 46784920 46785026 -101998446 - L2 LINE L2 -4 3268 3156 194 219 59 101 chr11 46785142 46785311 -101998161 - L2 LINE L2 -80 3233 3072 2006 139 0 29 chr11 46785634 46785950 -101997522 + AluJo SINE Alu 2 308 -4 532 295 33 15 chr11 46786797 46787002 -101996470 - MIR SINE MIR -55 207 2 * 963 267 95 62 chr11 46787002 46787231 -101996241 + L2 LINE L2 2470 2690 -623 1773 145 11 11 chr11 46787231 46787536 -101995936 + AluJb SINE Alu 1 305 0 963 267 95 62 chr11 46787536 46788110 -101995362 + L2 LINE L2 2690 3310 -3 2160 82 7 0 chr11 46788991 46789273 -101994199 + AluSx SINE Alu 1 284 -28 27 29 0 0 chr11 46789294 46789328 -101994144 + AT_rich Low_complexity Low_complexity 1 34 0 354 248 143 9 chr11 46789898 46790003 -101993469 - L2 LINE L2 -4 3309 3191 212 389 130 4 chr11 46790026 46790265 -101993207 + L2 LINE L2 2810 3078 -194 2234 85 10 7 chr11 46791267 46791574 -101991898 + AluY SINE Alu 1 308 -3 1750 147 19 25 chr11 46791715 46792029 -101991443 + AluJb SINE Alu 1 312 0 303 71 0 0 chr11 46794915 46794957 -101988515 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1526 171 10 41 chr11 46795049 46795342 -101988130 + AluJo SINE Alu 1 284 -28 1794 158 31 0 chr11 46796324 46796615 -101986857 + AluJo SINE Alu 2 301 -11 1061 181 275 3 chr11 46796629 46796916 -101986556 - MLT1A1 LTR MaLR 0 365 1 1967 112 14 0 chr11 46797176 46797484 -101985988 - AluSx SINE Alu 0 312 1 1960 242 93 37 chr11 46797501 46798304 -101985168 - L1M4 LINE L1 -2013 4133 3286 1798 130 12 23 chr11 46798312 46798651 -101984821 + MER61B LTR ERV1 1 425 0 3190 227 86 16 chr11 46798659 46799703 -101983769 - L1M4 LINE L1 -2889 3257 2141 322 244 37 12 chr11 46799851 46799933 -101983539 + L2 LINE L2 3172 3255 -17 290 287 0 50 chr11 46799974 46800075 -101983397 - MIR SINE MIR -59 149 54 348 24 0 0 chr11 46800280 46800321 -101983151 + (TG)n Simple_repeat Simple_repeat 2 42 0 1692 167 9 41 chr11 46800323 46800511 -101982961 - AluJo SINE Alu -4 308 133 2276 103 3 0 chr11 46800511 46800813 -101982659 + AluSg SINE Alu 1 303 -7 1692 167 9 41 chr11 46800813 46800942 -101982530 - AluJo SINE Alu -179 133 1 3143 136 75 22 chr11 46800968 46801505 -101981967 + MER34B LTR ERV1 1 565 0 430 233 37 61 chr11 46802579 46802742 -101980730 - MIR SINE MIR -1 261 103 345 322 97 70 chr11 46803910 46804031 -101979441 + MIR SINE MIR 30 161 -101 1816 179 0 22 chr11 46804031 46804349 -101979123 + AluJb SINE Alu 1 311 -1 345 322 97 70 chr11 46804349 46804454 -101979018 + MIR SINE MIR 161 262 0 791 245 25 33 chr11 46804565 46804810 -101978662 - L2 LINE L2 -75 3238 2996 1177 199 113 117 chr11 46804811 46804926 -101978546 - MLT1F1 LTR MaLR 0 567 453 2256 98 20 0 chr11 46804926 46805232 -101978240 - AluSx SINE Alu 0 312 1 1177 199 113 117 chr11 46805232 46805613 -101977859 - MLT1F1 LTR MaLR -114 453 73 1179 298 52 28 chr11 46805649 46806144 -101977328 - L2 LINE L2 -313 3000 2495 1061 95 0 0 chr11 46807032 46807169 -101976303 + AluSg/x SINE Alu 166 302 -10 2813 132 43 0 chr11 46807176 46807617 -101975855 + MER41B LTR ERV1 175 634 -1 2379 173 103 55 chr11 46807850 46808200 -101975272 - LTR9 LTR ERV1 -1 611 220 2396 96 3 3 chr11 46808200 46808513 -101974959 - AluSp SINE Alu 0 313 1 2379 173 103 55 chr11 46808513 46808745 -101974727 - LTR9 LTR ERV1 -392 220 1 281 245 28 47 chr11 46808783 46808887 -101974585 + MLT1J2 LTR MaLR 9 110 -340 635 221 8 0 chr11 46808887 46809014 -101974458 - MLT1A1 LTR MaLR 0 365 238 2303 126 62 72 chr11 46809020 46809577 -101973895 - LTR8A LTR ERV1 0 727 166 2251 151 17 50 chr11 46809577 46809994 -101973478 - MER57A LTR ERV1 0 403 1 2303 126 62 72 chr11 46809994 46810055 -101973417 - LTR8A LTR ERV1 -561 166 106 2219 109 0 3 chr11 46810055 46810348 -101973124 - AluSg SINE Alu -18 292 1 2303 126 62 72 chr11 46810348 46810373 -101973099 - LTR8A LTR ERV1 -621 106 1 1639 138 58 43 chr11 46810373 46810695 -101972777 - LTR59 LTR ERV1 -9 588 262 6044 87 11 44 chr11 46810695 46811552 -101971920 - MER4D LTR ERV1 0 872 45 3082 166 78 51 chr11 46811552 46812259 -101971213 + LTR8A LTR ERV1 2 727 0 6044 87 11 44 chr11 46812259 46812303 -101971169 - MER4D LTR ERV1 -827 45 1 1234 150 167 0 chr11 46812303 46812530 -101970942 - LTR59 LTR ERV1 -332 265 1 705 181 37 141 chr11 46812530 46812800 -101970672 - MLT1A1 LTR MaLR -123 242 1 340 274 86 98 chr11 46813933 46814018 -101969454 - L1MEd LINE L1 -3104 3025 2940 2121 128 14 0 chr11 46814018 46814315 -101969157 - AluSx SINE Alu -11 301 1 340 274 86 98 chr11 46814315 46814432 -101969040 - L1MEd LINE L1 -3189 2940 2823 2179 103 3 25 chr11 46814432 46814751 -101968721 - AluSq SINE Alu -1 312 1 340 274 86 98 chr11 46814751 46814872 -101968600 - L1MEd LINE L1 -3306 2823 2705 26 0 0 0 chr11 46814919 46814945 -101968527 + AT_rich Low_complexity Low_complexity 1 26 0 482 308 43 25 chr11 46814957 46815170 -101968302 + MLT1J2 LTR MaLR 1 257 -254 229 151 75 57 chr11 46815262 46815315 -101968157 + MLT1J LTR MaLR 394 447 -64 480 115 21 10 chr11 46815332 46815386 -101968086 + CT-rich Low_complexity Low_complexity 2 59 -39 2368 95 119 0 chr11 46815386 46815723 -101967749 + MER51B LTR ERV1 1 377 0 480 115 21 10 chr11 46815723 46815764 -101967708 + CT-rich Low_complexity Low_complexity 59 98 0 254 200 0 20 chr11 46816878 46816928 -101966544 + MLT1J LTR MaLR 1 49 -462 295 287 75 30 chr11 46817435 46817703 -101965769 - L1MEd LINE L1 -3680 2449 2170 354 232 0 0 chr11 46817725 46817794 -101965678 + L1M4 LINE L1 3458 3526 -2620 2200 100 23 0 chr11 46817797 46818096 -101965376 + AluY SINE Alu 1 306 -5 8317 189 20 31 chr11 46818138 46819778 -101963694 + L1M4 LINE L1 3536 5154 -1006 2334 118 0 0 chr11 46819778 46820084 -101963388 + AluSx SINE Alu 1 306 -6 8317 189 20 31 chr11 46820084 46820315 -101963157 + L1M4 LINE L1 5154 5386 -774 250 279 188 29 chr11 46820327 46820635 -101962837 - HAL1b LINE L1 -898 450 94 2539 86 0 3 chr11 46820802 46821116 -101962356 - AluSq SINE Alu 0 313 1 1504 123 9 14 chr11 46821642 46821862 -101961610 + MER20B DNA MER1_type 1 219 0 234 371 9 17 chr11 46822238 46822354 -101961118 - L1MEd LINE L1 -5569 550 436 316 301 77 86 chr11 46822405 46822705 -101960767 - L1MEd LINE L1 -5740 379 81 1915 133 0 54 chr11 46822705 46823020 -101960452 + AluJb SINE Alu 2 299 -13 316 301 77 86 chr11 46823020 46823044 -101960428 - L1MEd LINE L1 -6038 81 58 370 295 9 0 chr11 46823051 46823156 -101960316 + MIR SINE MIR 132 237 -25 838 169 7 7 chr11 46823672 46823814 -101959658 + AluJo SINE Alu 1 142 -170 1924 164 7 0 chr11 46823848 46824141 -101959331 - AluJb SINE Alu -17 295 1 1027 236 31 37 chr11 46824147 46824473 -101958999 - L1MC4 LINE L1 -758 7284 6961 294 269 30 0 chr11 46824502 46824569 -101958903 + L2 LINE L2 3208 3276 -37 202 294 24 24 chr11 46824591 46824676 -101958796 + MIR SINE MIR 132 216 -46 1574 127 0 9 chr11 46824688 46824908 -101958564 + AluSx SINE Alu 1 218 -94 210 71 0 0 chr11 46824924 46824952 -101958520 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1060 237 44 4 chr11 46824963 46825212 -101958260 - MIR SINE MIR -2 260 2 387 344 80 40 chr11 46825603 46825754 -101957718 + L2 LINE L2 3116 3272 0 217 281 57 54 chr11 46825787 46825926 -101957546 - MIR SINE MIR -72 190 49 748 179 0 0 chr11 46826500 46826617 -101956855 + FLAM_C SINE Alu 1 117 -16 282 277 81 68 chr11 46826652 46826800 -101956672 + MER5A DNA MER1_type 40 189 0 405 0 0 0 chr11 46827050 46827095 -101956377 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 493 238 10 10 chr11 46827643 46827744 -101955728 + L2 LINE L2 3210 3310 -3 963 210 88 48 chr11 46827869 46828164 -101955308 - MLT1C LTR MaLR -102 365 59 1310 207 87 5 chr11 46828226 46828623 -101954849 + MLT1F LTR MaLR 9 531 -11 583 235 45 35 chr11 46828634 46828834 -101954638 + MLT1F-int LTR MaLR 1 202 -1169 742 291 45 103 chr11 46829178 46829548 -101953924 + MLT1F-int LTR MaLR 699 1008 -363 198 0 0 0 chr11 46829548 46829570 -101953902 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 742 291 45 103 chr11 46829570 46829914 -101953558 + MLT1F-int LTR MaLR 1008 1371 0 266 309 12 0 chr11 46829914 46829995 -101953477 + MLT1F LTR MaLR 1 82 -460 718 260 130 23 chr11 46830103 46830487 -101952985 - MLT1J1 LTR MaLR -1 445 21 2380 165 39 53 chr11 46830820 46831328 -101952144 + MLT1D LTR MaLR 2 502 -3 677 183 8 16 chr11 46831410 46831536 -101951936 + MIR SINE MIR 34 158 -104 2340 108 3 3 chr11 46831635 46831941 -101951531 - AluSx SINE Alu -6 306 1 306 0 0 0 chr11 46832415 46832449 -101951023 + (T)n Simple_repeat Simple_repeat 1 34 0 1308 157 51 5 chr11 46832780 46832996 -101950476 + AluJo SINE Alu 87 312 0 307 293 79 63 chr11 46833282 46833309 -101950163 - L1MC4a LINE L1 -5 6116 6091 1550 114 0 0 chr11 46833309 46833511 -101949961 + AluSg/x SINE Alu 111 312 0 307 293 79 63 chr11 46833511 46833913 -101949559 - L1MC4a LINE L1 -30 6091 5680 256 262 60 34 chr11 46834113 46834351 -101949121 - L1P5 LINE L1 -711 5440 5197 577 287 84 20 chr11 46834380 46834582 -101948890 - MIR SINE MIR -3 259 45 870 263 86 14 chr11 46834623 46834729 -101948743 - LTR16C LTR ERVL -8 483 386 243 0 0 0 chr11 46834729 46834756 -101948716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 870 263 86 14 chr11 46834756 46835010 -101948462 - LTR16C LTR ERVL -105 386 97 2046 88 15 0 chr11 46835863 46836125 -101947347 - AluSx SINE Alu -12 300 35 243 289 40 0 chr11 46836322 46836398 -101947074 + MIR SINE MIR 33 111 -97 292 209 79 22 chr11 46836399 46836538 -101946934 - LTR16A LTR ERVL -3 447 301 241 200 22 0 chr11 46836992 46837037 -101946435 - L2 LINE L2 -4 3309 3264 331 329 56 37 chr11 46837404 46837465 -101946007 + MIR SINE MIR 99 157 -105 2264 108 0 3 chr11 46837465 46837762 -101945710 + AluSx SINE Alu 1 296 -16 331 329 56 37 chr11 46837762 46837861 -101945611 + MIR SINE MIR 157 262 0 275 306 51 20 chr11 46839201 46839299 -101944173 - L2 LINE L2 -46 3226 3126 301 137 20 0 chr11 46839353 46839404 -101944068 + L2 LINE L2 2283 2334 -980 324 85 83 12 chr11 46839404 46839633 -101943839 + AluSq SINE Alu 1 320 0 752 278 140 52 chr11 46839638 46840525 -101942947 + L2 LINE L2 2325 3311 -2 224 200 0 0 chr11 46840799 46840839 -101942633 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 448 290 0 62 chr11 46840863 46841025 -101942447 + MIR3 SINE MIR 30 181 -27 693 162 111 0 chr11 46842448 46842565 -101940907 - FLAM_A SINE Alu 0 133 4 521 170 62 36 chr11 46842806 46842918 -101940554 + MIR3 SINE MIR 49 163 -45 198 288 14 0 chr11 46843612 46843685 -101939787 + L2 LINE L2 2423 2496 -818 730 266 56 47 chr11 46843687 46843878 -101939594 + MIR SINE MIR 28 223 -39 1756 168 53 34 chr11 46843878 46844235 -101939237 - MLT1A1 LTR MaLR 0 365 2 730 266 56 47 chr11 46844235 46844276 -101939196 + MIR SINE MIR 223 262 0 2087 139 3 0 chr11 46844429 46844723 -101938749 + AluSx SINE Alu 7 301 -11 555 188 134 0 chr11 46844763 46844875 -101938597 - L2 LINE L2 0 3313 3187 330 306 90 15 chr11 46844847 46844981 -101938491 + MIR SINE MIR 27 170 -92 * 2200 125 3 0 chr11 46845145 46845448 -101938024 + AluSx SINE Alu 1 304 -8 192 152 0 0 chr11 46845638 46845671 -101937801 + T-rich Low_complexity Low_complexity 1 33 0 2140 111 23 7 chr11 46845673 46845980 -101937492 - AluJo SINE Alu 0 312 1 217 296 99 0 chr11 46846147 46846218 -101937254 + L2 LINE L2 3170 3247 -25 587 272 89 29 chr11 46846395 46846711 -101936761 - MLT1J2 LTR MaLR -1 445 104 368 224 37 19 chr11 46847425 46847532 -101935940 + MER20B DNA MER1_type 30 138 -645 544 179 86 8 chr11 46847610 46847727 -101935745 - MER5A DNA MER1_type -63 126 1 1408 254 61 30 chr11 46847735 46848140 -101935332 + MER20B DNA MER1_type 227 618 -165 254 73 24 0 chr11 46848140 46848181 -101935291 + (TG)n Simple_repeat Simple_repeat 1 42 0 1408 254 61 30 chr11 46848181 46848260 -101935212 + MER20B DNA MER1_type 618 693 -90 2016 126 3 7 chr11 46848260 46848567 -101934905 - AluJb SINE Alu 0 306 1 1408 254 61 30 chr11 46848567 46848620 -101934852 + MER20B DNA MER1_type 693 783 0 301 311 19 10 chr11 46848842 46848945 -101934527 - MIR SINE MIR -130 132 29 292 282 13 0 chr11 46849046 46849124 -101934348 - L2 LINE L2 -56 3257 3179 445 330 214 7 chr11 46849349 46849470 -101934002 - L2 LINE L2 -417 2897 2802 1711 197 89 21 chr11 46849470 46849907 -101933565 + MLT1C LTR MaLR 1 467 0 445 330 214 7 chr11 46849907 46850337 -101933135 - L2 LINE L2 -512 2802 2232 2042 146 17 0 chr11 46850439 46850741 -101932731 - AluSx SINE Alu -5 307 1 543 194 8 47 chr11 46850742 46850871 -101932601 + MER5B DNA MER1_type 5 128 -50 283 179 189 28 chr11 46850898 46851004 -101932468 - HAL1 LINE L1 -1747 760 638 866 255 20 8 chr11 46851010 46851257 -101932215 - HAL1 LINE L1 -2232 275 26 225 224 52 0 chr11 46851324 46851382 -101932090 - MLT1L LTR MaLR -3 612 552 809 262 53 12 chr11 46851616 46851860 -101931612 + MIR SINE MIR 2 255 -7 325 112 31 41 chr11 46852289 46852387 -101931085 + (TTCA)n Simple_repeat Simple_repeat 3 99 0 1246 182 5 5 chr11 46852398 46852607 -101930865 - AluJb SINE Alu -17 295 87 631 226 136 35 chr11 46852613 46852812 -101930660 + MIR SINE MIR 29 247 -15 297 269 0 0 chr11 46852810 46852877 -101930595 - MIR SINE MIR 0 262 196 * 1400 211 109 24 chr11 46852884 46853396 -101930076 - MLT1E LTR MaLR 0 593 2 581 144 215 67 chr11 46853435 46853630 -101929842 - MER2 DNA MER2_type -1 344 121 724 161 0 8 chr11 46853631 46853749 -101929723 + AluJb SINE Alu 2 118 -194 2447 94 3 0 chr11 46853749 46854057 -101929415 - AluSx SINE Alu -3 309 1 617 130 0 0 chr11 46854095 46854187 -101929285 + AluSg/x SINE Alu 216 307 -2 356 211 0 67 chr11 46854292 46854411 -101929061 + AluSg/x SINE Alu 219 302 0 * 807 159 15 0 chr11 46854408 46854540 -101928932 - MER2 DNA MER2_type -210 135 2 385 263 254 0 chr11 46854550 46854664 -101928808 - MIR SINE MIR -118 144 2 422 338 71 7 chr11 46854704 46854858 -101928614 - L2 LINE L2 -18 3254 3091 495 0 0 0 chr11 46855409 46855464 -101928008 + (TG)n Simple_repeat Simple_repeat 2 56 0 480 242 47 47 chr11 46856339 46856488 -101926984 + MIR SINE MIR 80 228 -34 840 190 0 60 chr11 46856914 46857004 -101926468 - L1MB3 LINE L1 -2 6181 6108 2130 115 35 0 chr11 46857004 46857290 -101926182 + AluSx SINE Alu 1 296 -16 840 190 0 60 chr11 46857290 46857399 -101926073 - L1MB3 LINE L1 -75 6108 5994 216 0 0 0 chr11 46858109 46858133 -101925339 + (AGCTG)n Simple_repeat Simple_repeat 2 25 0 208 317 0 0 chr11 46858241 46858301 -101925171 - MIR SINE MIR -79 129 70 474 250 175 12 chr11 46858356 46858516 -101924956 + MER5A DNA MER1_type 4 189 0 244 260 14 14 chr11 46859275 46859348 -101924124 - MER81 DNA DNA -7 107 35 566 228 39 44 chr11 46859385 46859565 -101923907 - MIR SINE MIR -57 205 27 335 300 124 43 chr11 46860020 46860133 -101923339 + MIR SINE MIR 36 138 -124 2272 123 3 0 chr11 46860133 46860434 -101923038 - AluSx SINE Alu -8 304 3 335 300 124 43 chr11 46860434 46860530 -101922942 + MIR SINE MIR 138 262 0 444 274 13 93 chr11 46861259 46861485 -101921987 + MIR SINE MIR 54 261 -1 208 240 192 29 chr11 46862076 46862180 -101921292 + MIR3 SINE MIR 39 159 -49 520 293 61 0 chr11 46862181 46862345 -101921127 + MIR SINE MIR 1 174 -88 479 290 148 0 chr11 46862374 46862536 -101920936 - MIR SINE MIR -11 251 66 1807 157 0 4 chr11 46862536 46862816 -101920656 + AluJb SINE Alu 21 299 -13 2099 145 3 0 chr11 46863115 46863419 -101920053 + AluJb SINE Alu 1 305 -7 2357 86 7 0 chr11 46863690 46863980 -101919492 + AluSp SINE Alu 1 292 -21 374 218 64 0 chr11 46863988 46864066 -101919406 - L2 LINE L2 -1 3312 3230 200 347 8 40 chr11 46864750 46864874 -101918598 + L2 LINE L2 2521 2640 -674 346 311 44 50 chr11 46864928 46865108 -101918364 + L2 LINE L2 3120 3298 -15 243 234 0 0 chr11 46865175 46865222 -101918250 + L2 LINE L2 3267 3313 0 192 163 0 0 chr11 46865401 46865444 -101918028 + (TG)n Simple_repeat Simple_repeat 1 43 0 850 264 25 29 chr11 46865840 46865921 -101917551 + L1MC4a LINE L1 5482 5562 -559 2344 101 0 0 chr11 46865921 46866218 -101917254 - AluSq SINE Alu -16 297 1 850 264 25 29 chr11 46866218 46866467 -101917005 + L1MC4a LINE L1 5562 5806 -315 256 292 14 0 chr11 46866490 46866562 -101916910 + L2 LINE L2 2026 2098 -1216 365 161 0 0 chr11 46866562 46866624 -101916848 + MER20 DNA MER1_type 158 219 0 259 274 0 0 chr11 46866626 46866730 -101916742 + L2 LINE L2 3215 3312 -1 305 266 166 0 chr11 46866732 46866871 -101916601 + L1MC4a LINE L1 5813 5974 -1834 2037 119 0 56 chr11 46866905 46867224 -101916248 - AluSx SINE Alu -11 301 1 191 360 16 40 chr11 46867565 46867690 -101915782 - MIR SINE MIR -68 194 73 1364 204 49 120 chr11 46867748 46868322 -101915150 - MLT1F LTR MaLR -6 536 4 334 281 94 106 chr11 46868780 46869015 -101914457 - MIR SINE MIR -11 251 20 494 277 178 15 chr11 46869351 46869553 -101913919 + MIR SINE MIR 2 236 -26 316 234 198 27 chr11 46870467 46870578 -101912894 + MIR3 SINE MIR 71 200 -8 466 296 29 71 chr11 46870684 46870924 -101912548 - L2 LINE L2 -91 3181 2952 439 225 124 39 chr11 46870937 46871066 -101912406 + MER91C DNA MER1_type 1 140 0 447 278 77 18 chr11 46871237 46871406 -101912066 + MIR SINE MIR 34 212 -50 306 53 53 35 chr11 46872275 46872332 -101911140 - L1MB7 LINE L1 0 6184 6127 706 198 0 0 chr11 46872332 46872458 -101911014 + FLAM_C SINE Alu 18 143 0 4283 178 62 14 chr11 46872462 46874260 -101909212 - L1MB7 LINE L1 -43 6639 4337 6324 153 12 3 chr11 46874262 46876263 -101907209 - L1PB1 LINE L1 0 6151 4134 6235 221 55 31 chr11 46876230 46876665 -101906807 - L1MB7 LINE L1 -2259 4385 3962 * 1761 161 3 25 chr11 46876665 46876982 -101906490 - AluJb SINE Alu -2 310 1 6235 221 55 31 chr11 46876982 46877603 -101905869 - L1MB7 LINE L1 -2682 3962 3358 2386 167 101 29 chr11 46877603 46878041 -101905431 + MLT2B1 LTR ERVL 1 406 -114 258 32 0 0 chr11 46878041 46878072 -101905400 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr11 46878071 46878112 -101905360 + (TG)n Simple_repeat Simple_repeat 2 42 0 2386 167 101 29 chr11 46878072 46878158 -101905314 + MLT2B1 LTR ERVL 406 520 0 6235 221 55 31 chr11 46878158 46880362 -101903110 - L1MB7 LINE L1 -3286 3358 916 2220 92 7 0 chr11 46880362 46880655 -101902817 - AluSp SINE Alu -18 295 1 6235 221 55 31 chr11 46880655 46881051 -101902421 - L1MB7 LINE L1 -5728 916 531 279 259 84 53 chr11 46881051 46881182 -101902290 + MIR SINE MIR 122 256 -6 207 319 176 22 chr11 46881241 46881332 -101902140 - MIR SINE MIR -87 121 17 1524 188 20 24 chr11 46881510 46881803 -101901669 + AluJo SINE Alu 1 292 -20 831 190 147 11 chr11 46881976 46882160 -101901312 + MER3 DNA MER1_type 1 209 0 337 215 29 147 chr11 46882236 46882464 -101901008 + MIR SINE MIR 4 200 -41 945 251 171 16 chr11 46882590 46883066 -101900406 + L2 LINE L2 2510 3053 -260 346 224 13 13 chr11 46883069 46883145 -101900327 + L2 LINE L2 3237 3312 -1 326 248 44 97 chr11 46883210 46883323 -101900149 + MIR3 SINE MIR 77 183 -25 594 0 0 0 chr11 46883597 46883663 -101899809 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 243 0 0 0 chr11 46883685 46883712 -101899760 + (T)n Simple_repeat Simple_repeat 1 27 0 389 320 14 14 chr11 46884495 46884642 -101898830 - MIR SINE MIR -69 193 47 568 284 49 0 chr11 46884678 46884840 -101898632 + MIR SINE MIR 50 219 -43 1393 270 47 7 chr11 46885147 46885555 -101897917 - LTR16B LTR ERVL -40 424 1 300 257 19 38 chr11 46885557 46885662 -101897810 + MIR SINE MIR 71 173 -89 532 226 98 9 chr11 46885674 46885867 -101897605 - MLT1H1 LTR MaLR -11 544 341 228 195 0 0 chr11 46886039 46886080 -101897392 - MLT1F LTR MaLR -480 62 22 309 173 10 164 chr11 46886834 46886938 -101896534 - MIR SINE MIR -123 139 52 199 288 62 25 chr11 46887871 46887951 -101895521 + MER5A DNA MER1_type 81 163 -26 2489 101 27 36 chr11 46888033 46888398 -101895074 - THE1B LTR MaLR -2 362 1 194 238 0 0 chr11 46888539 46888581 -101894891 + L2 LINE L2 2741 2782 -532 1091 250 148 21 chr11 46888611 46888983 -101894489 + L2 LINE L2 2895 3313 0 2120 129 0 0 chr11 46889283 46889593 -101893879 + AluSx SINE Alu 1 310 -2 362 248 108 51 chr11 46889923 46890080 -101893392 + MIR SINE MIR 17 182 -80 1957 140 0 0 chr11 46890129 46890429 -101893043 + AluSx SINE Alu 2 301 -11 279 228 109 40 chr11 46890874 46890975 -101892497 + MIR SINE MIR 48 155 -107 207 321 83 18 chr11 46891376 46891485 -101891987 - L2 LINE L2 -8 3305 3190 423 38 0 0 chr11 46891485 46891538 -101891934 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 1134 260 26 68 chr11 46891549 46891976 -101891496 - L2 LINE L2 0 3313 2905 451 277 30 71 chr11 46892029 46892296 -101891176 - L2 LINE L2 -206 3066 2811 185 317 0 92 chr11 46892506 46892626 -101890846 - L2 LINE L2 -520 2794 2686 232 375 57 0 chr11 46892627 46892715 -101890757 + L2 LINE L2 3202 3294 -19 2534 96 0 6 chr11 46892938 46893291 -101890181 + L1PB1 LINE L1 5800 6150 -1 317 267 11 33 chr11 46893297 46893387 -101890085 + MER5A DNA MER1_type 63 150 -39 325 294 65 23 chr11 46893542 46893738 -101889734 - MIR SINE MIR -43 219 19 282 287 233 7 chr11 46893859 46894009 -101889463 + MER5A DNA MER1_type 2 185 -4 585 332 58 9 chr11 46894516 46894739 -101888733 + MIR SINE MIR 19 252 -10 204 146 164 18 chr11 46894878 46894933 -101888539 + MIR SINE MIR 129 191 -71 329 289 21 21 chr11 46894995 46895092 -101888380 - L1MEd LINE L1 -5097 1022 926 298 140 80 0 chr11 46895161 46895211 -101888261 - MER58A DNA MER1_type -17 90 37 1082 315 142 35 chr11 46895213 46896118 -101887354 - L1 LINE L1 -1845 4301 3287 670 189 47 0 chr11 46896118 46896245 -101887227 - FLAM_C SINE Alu 0 133 1 1082 315 142 35 chr11 46896245 46896299 -101887173 - L1 LINE L1 -2859 3287 3240 1803 160 0 7 chr11 46896427 46896720 -101886752 + AluJb SINE Alu 1 291 -21 433 290 107 0 chr11 46896780 46896949 -101886523 - L1ME1 LINE L1 -19 6147 5961 495 232 178 19 chr11 46896987 46897302 -101886170 - L1MEc LINE L1 -4785 1611 1247 23 0 0 0 chr11 46897485 46897508 -101885964 + AT_rich Low_complexity Low_complexity 1 23 0 257 219 186 1 chr11 46897887 46897965 -101885507 + MIR SINE MIR 43 132 -76 385 327 9 0 chr11 46897965 46898072 -101885400 - MIR SINE MIR -56 152 45 1820 148 0 7 chr11 46898790 46899080 -101884392 + AluJb SINE Alu 7 294 -18 379 234 0 0 chr11 46900581 46900678 -101882794 + AluJ/FRAM SINE Alu 219 315 0 729 210 14 0 chr11 46900692 46900830 -101882642 + MER5A DNA MER1_type 47 186 -3 1179 173 9 62 chr11 46901009 46901234 -101882238 - MER58A DNA MER1_type 0 224 12 237 319 156 22 chr11 46902223 46902358 -101881114 - MIR SINE MIR -31 231 79 198 301 89 8 chr11 46902610 46902733 -101880739 - L2 LINE L2 -310 2962 2830 2111 129 0 0 chr11 46902766 46903075 -101880397 + AluJb SINE Alu 1 309 -3 183 229 42 21 chr11 46903544 46903592 -101879880 + L3b LINE CR1 1372 1420 -163 2299 86 0 0 chr11 46904467 46904770 -101878702 - AluY SINE Alu -8 303 1 230 258 177 8 chr11 46904771 46904895 -101878577 + MIR3 SINE MIR 45 189 -19 1877 130 4 0 chr11 46907220 46907496 -101875976 + AluSx SINE Alu 11 287 -25 274 236 118 112 chr11 46907991 46908077 -101875395 + MIR SINE MIR 49 133 -129 2194 117 0 0 chr11 46908077 46908385 -101875087 - AluSg SINE Alu -2 308 1 274 236 118 112 chr11 46908385 46908476 -101874996 + MIR SINE MIR 133 227 -35 180 351 0 0 chr11 46909285 46909362 -101874110 - L2 LINE L2 -299 2973 2897 2012 120 7 0 chr11 46910181 46910481 -101872991 + AluSq SINE Alu 1 302 -11 506 232 176 0 chr11 46911084 46911209 -101872263 - MER5B DNA MER1_type -3 175 29 1831 141 0 0 chr11 46911519 46911796 -101871676 + AluSx SINE Alu 2 278 -34 190 29 57 29 chr11 46911815 46911850 -101871622 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 228 338 19 94 chr11 46912501 46912588 -101870884 - L2 LINE L2 -4 3268 3197 2209 95 7 3 chr11 46912588 46912893 -101870579 + AluSg SINE Alu 1 306 -4 228 338 19 94 chr11 46912893 46912965 -101870507 - L2 LINE L2 -75 3197 3121 188 308 0 0 chr11 46912959 46913011 -101870461 - L2 LINE L2 -500 2814 2763 * 335 234 13 13 chr11 46913027 46913104 -101870368 - L2 LINE L2 -3 3310 3234 1716 154 31 0 chr11 46914238 46914530 -101868942 + AluJo SINE Alu 2 302 -10 1071 167 282 11 chr11 46914544 46914831 -101868641 - MLT1A1 LTR MaLR 0 365 1 1874 112 14 0 chr11 46915091 46915402 -101868070 - AluSx SINE Alu 0 315 1 1875 241 95 35 chr11 46915419 46916219 -101867253 - L1M4 LINE L1 -2013 4133 3286 1822 130 12 23 chr11 46916227 46916566 -101866906 + MER61B LTR ERV1 1 425 0 3130 218 86 16 chr11 46916574 46917618 -101865854 - L1M4 LINE L1 -2889 3257 2141 334 263 30 20 chr11 46917766 46917865 -101865607 + L2 LINE L2 3172 3271 -1 295 287 0 50 chr11 46917889 46917990 -101865482 - MIR SINE MIR -59 149 54 222 37 0 0 chr11 46918195 46918222 -101865250 + (TG)n Simple_repeat Simple_repeat 2 28 0 1573 166 10 41 chr11 46918224 46918408 -101865064 - AluJo SINE Alu -8 304 133 2172 103 3 0 chr11 46918408 46918710 -101864762 + AluSg SINE Alu 1 303 -7 1573 166 10 41 chr11 46918710 46918839 -101864633 - AluJo SINE Alu -179 133 1 2936 138 75 19 chr11 46918865 46919400 -101864072 + MER34B LTR ERV1 1 565 0 459 233 37 61 chr11 46920474 46920637 -101862835 - MIR SINE MIR -1 261 103 193 220 0 60 chr11 46921021 46921071 -101862401 + L2 LINE L2 3258 3304 -9 362 317 97 70 chr11 46921805 46921926 -101861546 + MIR SINE MIR 30 161 -101 1719 179 0 22 chr11 46921926 46922244 -101861228 + AluJb SINE Alu 1 311 -1 362 317 97 70 chr11 46922244 46922349 -101861123 + MIR SINE MIR 161 262 0 811 246 24 32 chr11 46922452 46922705 -101860767 - L2 LINE L2 -67 3246 2996 1066 203 115 119 chr11 46922706 46922821 -101860651 - MLT1F1 LTR MaLR 0 567 453 2334 92 20 0 chr11 46922821 46923127 -101860345 - AluSx SINE Alu 0 312 1 1066 203 115 119 chr11 46923127 46923508 -101859964 - MLT1F1 LTR MaLR -114 453 73 1267 297 51 28 chr11 46923544 46924044 -101859428 - L2 LINE L2 -313 3000 2490 191 295 205 9 chr11 46924413 46924525 -101858947 - L2 LINE L2 0 3313 3180 374 255 39 0 chr11 46925027 46925129 -101858343 + MIR SINE MIR 30 135 -73 1838 205 35 7 chr11 46925196 46925620 -101857852 + MER63B DNA MER1_type 1 436 0 2287 93 0 0 chr11 46925759 46926082 -101857390 - AluSg SINE Alu 0 323 1 1371 140 108 7 chr11 46926148 46926426 -101857046 - MER33 DNA MER1_type -15 309 4 657 250 29 0 chr11 46926795 46926935 -101856537 + MIR3 SINE MIR 2 145 -63 940 199 16 0 chr11 46927160 46927351 -101856121 + MER20 DNA MER1_type 18 211 -8 207 235 78 0 chr11 46927580 46927631 -101855841 - MIR SINE MIR -2 260 206 432 300 112 60 chr11 46927684 46927917 -101855555 + MIR SINE MIR 7 251 -11 2063 121 4 0 chr11 46928361 46928813 -101854659 - AluSx SINE Alu 0 453 1 562 298 20 28 chr11 46929636 46929891 -101853581 - MLT1L LTR MaLR -362 253 1 791 234 60 5 chr11 46929981 46930182 -101853290 - MIR SINE MIR 0 262 51 473 304 6 25 chr11 46930252 46930410 -101853062 + MIR SINE MIR 106 260 -2 2796 93 3 3 chr11 46930427 46930791 -101852681 - THE1B LTR MaLR 0 364 1 262 346 59 33 chr11 46931809 46931962 -101851510 - MER5B DNA MER1_type -4 174 18 332 256 78 0 chr11 46932663 46932753 -101850719 - MIR SINE MIR 0 262 166 191 217 261 14 chr11 46932838 46932907 -101850565 - MIR SINE MIR -77 185 100 225 159 0 0 chr11 46933612 46933656 -101849816 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 871 161 0 0 chr11 46933797 46933927 -101849545 + FLAM_C SINE Alu 6 135 -8 286 259 56 84 chr11 46934015 46934158 -101849314 - MIR SINE MIR -48 214 76 * 489 271 0 8 chr11 46934153 46934275 -101849197 - L2 LINE L2 -2 3311 3191 389 224 6 0 chr11 46984417 46984578 -101798894 + (CACAA)n Simple_repeat Simple_repeat 4 165 0 203 157 20 0 chr11 46984591 46984642 -101798830 + (CAACC)n Simple_repeat Simple_repeat 3 54 0 974 199 16 21 chr11 46984696 46984887 -101798585 - AluJo SINE Alu -4 308 119 1677 174 3 16 chr11 46984891 46985195 -101798277 - AluJo SINE Alu -12 300 1 311 289 82 10 chr11 46985246 46985343 -101798129 + L2 LINE L2 3136 3239 -33 180 0 0 0 chr11 46985654 46985674 -101797798 + (T)n Simple_repeat Simple_repeat 1 20 0 1972 140 10 13 chr11 46986031 46986339 -101797133 - AluSx SINE Alu -5 307 1 2255 91 7 0 chr11 46986348 46986633 -101796839 - AluSx SINE Alu -19 293 7 202 216 0 0 chr11 46987134 46987171 -101796301 + (CA)n Simple_repeat Simple_repeat 1 37 0 466 270 90 17 chr11 46987390 46987568 -101795904 - MIR3 SINE MIR 0 208 18 731 174 149 31 chr11 46990220 46990381 -101793091 - MER5A DNA MER1_type 0 189 10 2312 306 78 63 chr11 46992311 46992947 -101790525 - HAL1 LINE L1 -274 2233 1608 2310 85 3 0 chr11 46992947 46993241 -101790231 + AluSx SINE Alu 1 295 -17 2312 306 78 63 chr11 46993241 46994390 -101789082 - HAL1 LINE L1 -899 1608 421 2602 181 109 76 chr11 46994706 46995519 -101787953 - L1MC4 LINE L1 -57 7985 7146 760 254 74 63 chr11 46995585 46996204 -101787268 - L1MEd LINE L1 -4890 1229 604 2362 53 0 0 chr11 46996597 46996901 -101786571 + AluY SINE Alu 1 304 0 904 281 44 51 chr11 46997114 46997548 -101785924 - L1MEd LINE L1 -5647 472 42 200 208 0 39 chr11 46998176 46998253 -101785219 + T-rich Low_complexity Low_complexity 1 74 0 273 262 56 65 chr11 46999143 46999250 -101784222 + MIR SINE MIR 81 186 -76 477 168 0 0 chr11 46999376 46999483 -101783989 + CT-rich Low_complexity Low_complexity 2 108 0 709 169 8 0 chr11 46999483 46999601 -101783871 - FRAM SINE Alu -64 112 1 1116 186 9 41 chr11 46999618 46999839 -101783633 - AluJo SINE Alu -59 253 40 288 282 141 13 chr11 46999843 46999992 -101783480 + MIR SINE MIR 94 261 -1 231 193 121 60 chr11 47000110 47000193 -101783279 - MIR SINE MIR -61 201 114 219 353 29 0 chr11 47000208 47000276 -101783196 - MIR3 SINE MIR -47 161 92 245 245 56 70 chr11 47000420 47000563 -101782909 + L1MEd LINE L1 300 440 -5976 237 338 0 0 chr11 47000932 47001006 -101782466 + L1MEd LINE L1 897 970 -5446 585 250 57 26 chr11 47001124 47001445 -101782027 + L1MEd LINE L1 1236 1554 -4862 2268 128 123 5 chr11 47001764 47002147 -101781325 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr11 47004418 47004440 -101779032 + AT_rich Low_complexity Low_complexity 1 22 0 362 351 105 53 chr11 47004542 47004884 -101778588 + L2 LINE L2 2913 3272 0 565 271 90 0 chr11 47005010 47005176 -101778296 - MIR SINE MIR -32 230 50 530 282 82 24 chr11 47005766 47005972 -101777500 - MIR SINE MIR -13 249 32 862 275 50 5 chr11 47006927 47007145 -101776327 + MIR SINE MIR 32 259 -3 2365 89 10 0 chr11 47007544 47007846 -101775626 + AluSp SINE Alu 1 305 -8 490 138 0 0 chr11 47008227 47008314 -101775158 + L1MB3 LINE L1 6090 6176 -7 358 167 77 0 chr11 47008332 47008410 -101775062 + L1MB8 LINE L1 6093 6176 -2 556 212 69 84 chr11 47008633 47008968 -101774504 - HAL1 LINE L1 -1070 1437 1108 606 256 45 56 chr11 47009025 47009380 -101774092 - HAL1 LINE L1 -1412 1095 745 967 262 107 52 chr11 47009402 47009993 -101773479 - HAL1 LINE L1 -1884 623 1 25 0 0 0 chr11 47012532 47012557 -101770915 + AT_rich Low_complexity Low_complexity 1 25 0 341 246 138 23 chr11 47013790 47013920 -101769552 - MIR SINE MIR -37 225 81 557 286 111 9 chr11 47015064 47015281 -101768191 - MIR SINE MIR -4 258 20 417 363 51 34 chr11 47015344 47015578 -101767894 - L3 LINE CR1 -91 1486 1249 568 225 127 105 chr11 47015584 47016111 -101767361 - LTR41 LTR ERVL -6 767 218 225 0 0 0 chr11 47016111 47016136 -101767336 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 568 225 127 105 chr11 47016136 47016359 -101767113 - LTR41 LTR ERVL -555 218 1 212 346 24 39 chr11 47016359 47016486 -101766986 - L3 LINE CR1 -376 1201 1077 923 243 25 13 chr11 47016497 47016736 -101766736 + Charlie1 DNA MER1_type 1 242 -2519 591 175 0 106 chr11 47016716 47016876 -101766596 + Charlie1 DNA MER1_type 2619 2761 0 * 1867 152 42 27 chr11 47016924 47017254 -101766218 + MER1B DNA MER1_type 3 337 0 557 266 130 31 chr11 47017451 47017643 -101765829 + MIR SINE MIR 38 248 -14 183 274 233 14 chr11 47017681 47017754 -101765718 - MIR SINE MIR -96 112 24 782 217 54 20 chr11 47017946 47018149 -101765323 + MER69 DNA AcHobo 41 250 -2276 223 93 47 0 chr11 47018939 47018982 -101764490 + (TATG)n Simple_repeat Simple_repeat 4 48 0 194 224 61 20 chr11 47020764 47020813 -101762659 + MIR3 SINE MIR 137 187 -21 397 322 105 1 chr11 47021043 47021242 -101762230 - MIR SINE MIR -25 237 18 439 326 155 0 chr11 47021388 47021569 -101761903 + MIR SINE MIR 31 239 -23 618 373 39 11 chr11 47022083 47022362 -101761110 + L2 LINE L2 2986 3272 0 1999 219 25 44 chr11 47022449 47023062 -101760410 + L1ME1 LINE L1 5555 6155 -11 1591 212 40 5 chr11 47023102 47023546 -101759926 + L1ME1 LINE L1 4388 4847 -1299 4300 139 28 5 chr11 47023546 47024293 -101759179 + L1MA7 LINE L1 5526 6289 -2 1488 207 102 50 chr11 47024346 47024390 -101759082 + L1ME1 LINE L1 5323 5363 -803 2020 125 0 4 chr11 47024390 47024670 -101758802 + AluSg SINE Alu 1 279 -31 460 48 0 0 chr11 47024670 47024732 -101758740 + (TAAA)n Simple_repeat Simple_repeat 1 164 0 1488 207 102 50 chr11 47024732 47025452 -101758020 + L1ME1 LINE L1 5363 6166 0 * 2259 201 73 18 chr11 47025449 47026285 -101757187 + L1MDa LINE L1 986 3590 -2950 593 186 8 8 chr11 47026488 47026612 -101756860 - AluY SINE Alu -2 309 186 435 170 0 0 chr11 47026622 47026722 -101756750 + G-rich Low_complexity Low_complexity 1 100 0 206 337 48 0 chr11 47026925 47027008 -101756464 - L2 LINE L2 -3 3269 3183 206 204 0 20 chr11 47027135 47027184 -101756288 + MIR SINE MIR 82 129 -79 225 295 53 11 chr11 47027184 47027279 -101756193 - L2 LINE L2 -16 3297 3199 1787 154 0 13 chr11 47027656 47027967 -101755505 + AluJo SINE Alu 1 307 -5 180 0 0 0 chr11 47028324 47028344 -101755128 + (A)n Simple_repeat Simple_repeat 1 20 0 270 314 102 8 chr11 47028655 47028773 -101754699 - L2 LINE L2 -33 3239 3111 1570 168 3 32 chr11 47028807 47029123 -101754349 + AluJo SINE Alu 5 311 -1 967 218 0 0 chr11 47029128 47029293 -101754179 + FRAM SINE Alu 2 166 0 182 176 20 0 chr11 47029355 47029406 -101754066 + (AGTTG)n Simple_repeat Simple_repeat 3 54 0 389 224 6 0 chr11 47029419 47029580 -101753892 + (TTGTG)n Simple_repeat Simple_repeat 4 165 0 228 242 16 0 chr11 47029587 47029649 -101753823 + (AGTTG)n Simple_repeat Simple_repeat 2 64 0 454 207 11 0 chr11 47029658 47029832 -101753640 + (TTGTG)n Simple_repeat Simple_repeat 4 179 0 261 233 41 0 chr11 47029835 47029908 -101753564 + (GGTTG)n Simple_repeat Simple_repeat 3 78 0 252 303 83 9 chr11 47029930 47030039 -101753433 - L2 LINE L2 -231 3082 2966 441 223 201 0 chr11 47030919 47031058 -101752414 + MIR3 SINE MIR 36 202 -6 2109 155 12 26 chr11 47031775 47032117 -101751355 - MER1B DNA MER1_type 0 337 1 495 228 67 61 chr11 47032117 47032297 -101751175 + MIR SINE MIR 17 197 -65 230 361 23 23 chr11 47034932 47035062 -101748410 + L2 LINE L2 3183 3312 -1 224 363 46 58 chr11 47035995 47036254 -101747218 - L3 LINE CR1 -106 1471 1216 183 250 0 44 chr11 47036982 47037050 -101746422 - L2 LINE L2 -64 3249 3185 719 189 12 12 chr11 47037141 47037305 -101746167 + L1MC3 LINE L1 7461 7624 -161 2306 236 87 36 chr11 47037310 47038093 -101745379 + L1ME1 LINE L1 5314 6136 -30 2117 118 0 10 chr11 47038093 47038397 -101745075 + AluSq SINE Alu 1 301 -12 397 289 77 19 chr11 47038465 47038673 -101744799 + L1ME LINE L1 5583 5802 -319 353 210 78 132 chr11 47038675 47038700 -101744772 + L2 LINE L2 3120 3145 -168 1897 145 3 0 chr11 47038700 47038990 -101744482 - AluSx SINE Alu -16 296 6 353 210 78 132 chr11 47038990 47039169 -101744303 + L2 LINE L2 3145 3313 0 381 264 42 14 chr11 47039515 47039659 -101743813 + MER53 DNA DNA 32 179 -10 288 91 0 0 chr11 47040030 47040074 -101743398 + (CA)n Simple_repeat Simple_repeat 1 44 0 2188 97 0 0 chr11 47040096 47040395 -101743077 - AluSq SINE Alu -14 299 1 353 332 142 14 chr11 47040435 47040851 -101742621 - L1ME4a LINE L1 -268 5853 5385 214 269 54 32 chr11 47041920 47042013 -101741459 - MIR SINE MIR -55 153 59 190 0 32 32 chr11 47042420 47042451 -101741021 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 239 306 28 0 chr11 47042537 47042609 -101740863 - MIR SINE MIR -116 146 73 669 177 23 15 chr11 47042614 47042744 -101740728 + FLAM_C SINE Alu 3 133 0 290 162 0 122 chr11 47043029 47043103 -101740369 + L1MC4 LINE L1 7814 7878 -164 717 156 0 0 chr11 47043103 47043212 -101740260 - AluSx SINE Alu -8 304 196 810 85 0 0 chr11 47043212 47043318 -101740154 - AluSx SINE Alu -206 106 1 424 234 42 22 chr11 47043421 47043555 -101739917 + L1MC4 LINE L1 7880 8042 0 515 260 39 0 chr11 47044531 47044658 -101738814 - MIR SINE MIR -65 197 66 263 244 150 31 chr11 47045115 47045242 -101738230 - MIR3 SINE MIR -61 147 6 203 284 60 15 chr11 47045433 47045500 -101737972 + MIR SINE MIR 13 82 -180 335 289 206 6 chr11 47045502 47045682 -101737790 - L2 LINE L2 0 3272 3057 450 272 64 0 chr11 47045858 47045983 -101737489 + MIR SINE MIR 63 195 -67 1732 137 18 4 chr11 47046529 47046835 -101736637 - AluSx SINE Alu 0 310 1 1889 129 7 3 chr11 47046942 47047245 -101736227 - AluSg SINE Alu -6 304 1 1536 161 4 50 chr11 47047367 47047647 -101735825 - AluJo SINE Alu -45 267 1 1583 160 18 21 chr11 47047942 47048224 -101735248 + AluJo SINE Alu 1 281 -31 793 73 8 8 chr11 47048228 47048351 -101735121 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 913 101 31 0 chr11 47048429 47048558 -101734914 + AluSq/x SINE Alu 1 133 -179 187 184 0 0 chr11 47049293 47049331 -101734141 + MIR SINE MIR 117 154 -108 796 207 25 36 chr11 47049896 47049952 -101733520 - MIR SINE MIR -1 261 206 2174 88 0 3 chr11 47049952 47050279 -101733193 - AluSq SINE Alu 0 326 1 796 207 25 36 chr11 47050279 47050441 -101733031 - MIR SINE MIR -56 206 40 2009 230 43 13 chr11 47051239 47051796 -101731676 + L1M4 LINE L1 4792 5365 -781 1465 145 43 46 chr11 47051796 47051853 -101731619 + L1MB4 LINE L1 5878 5934 -246 2363 95 0 0 chr11 47051853 47052158 -101731314 + AluSq SINE Alu 1 305 -8 1465 145 43 46 chr11 47052158 47052403 -101731069 + L1MB4 LINE L1 5934 6179 -1 204 143 0 0 chr11 47052487 47052522 -101730950 + L2 LINE L2 2722 2756 -558 2000 119 7 0 chr11 47052561 47052875 -101730597 + AluJb SINE Alu 1 316 0 323 342 26 13 chr11 47052934 47053089 -101730383 + L2 LINE L2 2889 3045 -227 181 211 53 0 chr11 47053299 47053337 -101730135 + MIR SINE MIR 108 147 -115 352 164 64 82 chr11 47054072 47054182 -101729290 - L2 LINE L2 0 3313 3206 2398 67 3 0 chr11 47054479 47054779 -101728693 - AluY SINE Alu -5 306 6 663 271 28 17 chr11 47054900 47055104 -101728368 + MIR SINE MIR 43 245 -17 191 250 0 0 chr11 47055450 47055490 -101727982 + L2 LINE L2 3126 3165 -107 195 335 110 53 chr11 47056066 47056275 -101727197 + L2 LINE L2 3034 3254 -18 183 362 0 14 chr11 47056286 47056355 -101727117 + MIR3 SINE MIR 120 187 -21 188 211 200 11 chr11 47056844 47056939 -101726533 + MIR SINE MIR 34 146 -62 236 192 162 20 chr11 47057620 47057719 -101725753 + MIR SINE MIR 34 146 -62 299 274 0 34 chr11 47061601 47061718 -101721754 + L1ME3 LINE L1 6036 6148 -14 194 258 75 43 chr11 47063732 47063825 -101719647 - MIR SINE MIR -107 155 60 492 279 0 0 chr11 47064291 47064463 -101719009 + (TG)n Simple_repeat Simple_repeat 1 172 0 207 191 0 73 chr11 47065621 47065731 -101717741 + (CCGCG)n Simple_repeat Simple_repeat 5 106 0 189 94 0 0 chr11 47066208 47066240 -101717232 + (CTG)n Simple_repeat Simple_repeat 3 34 0 475 147 43 0 chr11 47066697 47066813 -101716659 + CT-rich Low_complexity Low_complexity 1 121 0 241 270 0 27 chr11 47066943 47067017 -101716455 + C-rich Low_complexity Low_complexity 5 76 0 273 273 0 0 chr11 47067922 47067999 -101715473 - MIR SINE MIR -117 145 69 279 369 66 25 chr11 47068715 47068989 -101714483 + L2 LINE L2 2869 3153 -119 2012 90 3 28 chr11 47069057 47069384 -101714088 + AluY SINE Alu 1 320 0 397 225 300 40 chr11 47070934 47071161 -101712311 + L2 LINE L2 3026 3311 -2 301 160 53 0 chr11 47071301 47071376 -101712096 + CT-rich Low_complexity Low_complexity 2 80 0 893 130 5 27 chr11 47071384 47071568 -101711904 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2168 129 0 0 chr11 47071578 47071888 -101711584 - AluY SINE Alu 0 311 2 544 278 59 12 chr11 47072367 47072536 -101710936 - MIR SINE MIR -77 185 9 584 229 34 43 chr11 47074983 47075153 -101708319 + MIR SINE MIR 32 199 -62 227 390 18 5 chr11 47075504 47075699 -101707773 - MIR3 SINE MIR -55 207 10 207 255 0 0 chr11 47075958 47076005 -101707467 + L2 LINE L2 3213 3259 -13 22 0 0 0 chr11 47076588 47076610 -101706862 + GC_rich Low_complexity Low_complexity 1 22 0 477 229 82 53 chr11 47077299 47077469 -101706003 + MIR SINE MIR 14 188 -74 469 80 67 0 chr11 47077874 47077949 -101705523 - L1MB5 LINE L1 0 6174 6095 1080 222 109 54 chr11 47078435 47078877 -101704595 - MLT1C LTR MaLR 0 467 2 209 303 160 25 chr11 47080001 47080120 -101703352 + L2 LINE L2 2953 3087 -185 181 150 0 75 chr11 47080887 47080927 -101702545 + MIR SINE MIR 117 153 -109 530 215 120 60 chr11 47081151 47081351 -101702121 + MIR SINE MIR 50 261 -1 357 275 154 28 chr11 47082143 47082325 -101701147 + L2 LINE L2 3108 3312 -1 * 402 300 52 36 chr11 47082311 47082512 -101700960 - MIR SINE MIR -56 206 3 561 285 64 12 chr11 47082635 47082807 -101700665 - MIR SINE MIR -58 204 24 222 91 0 0 chr11 47083059 47083092 -101700380 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 344 11 0 chr11 47083550 47083643 -101699829 + (TG)n Simple_repeat Simple_repeat 1 94 0 401 214 38 30 chr11 47084014 47084145 -101699327 + MIR SINE MIR 1 132 -130 255 261 0 14 chr11 47085163 47085232 -101698240 + C-rich Low_complexity Low_complexity 3 70 0 969 75 0 0 chr11 47085689 47085822 -101697650 + L1PA13 LINE L1 6027 6159 -4 514 314 93 5 chr11 47086337 47086531 -101696941 - MIR SINE MIR -45 217 7 1366 208 123 14 chr11 47087233 47087647 -101695825 + MLT1C LTR MaLR 7 465 -2 360 288 63 0 chr11 47087677 47087788 -101695684 + MIR SINE MIR 89 206 -56 1461 179 63 11 chr11 47088575 47088866 -101694606 - AluJb SINE Alu 0 305 1 231 301 117 0 chr11 47089230 47089333 -101694139 + L2 LINE L2 3138 3252 -20 218 204 0 20 chr11 47089338 47089387 -101694085 - MIR SINE MIR -79 129 82 1610 70 22 26 chr11 47089956 47090186 -101693286 - L1PA10 LINE L1 -1 6167 5939 435 255 0 10 chr11 47090252 47090354 -101693118 - MIR SINE MIR -101 161 61 411 256 75 24 chr11 47090950 47091144 -101692328 + MIR SINE MIR 48 256 -6 207 204 0 0 chr11 47092034 47092078 -101691394 + CT-rich Low_complexity Low_complexity 2 45 0 245 29 29 0 chr11 47092711 47092745 -101690727 + (TTA)n Simple_repeat Simple_repeat 2 36 0 192 125 0 0 chr11 47094620 47094652 -101688820 + (T)n Simple_repeat Simple_repeat 1 32 0 2136 122 0 17 chr11 47096816 47097111 -101686361 - AluJb SINE Alu -22 290 1 240 59 0 0 chr11 47098372 47098406 -101685066 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2211 113 0 0 chr11 47098406 47098689 -101684783 - AluSx SINE Alu -29 283 1 205 229 14 57 chr11 47098783 47098853 -101684619 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 47099060 47099088 -101684384 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1580 153 71 0 chr11 47099097 47099352 -101684120 - AluJb SINE Alu -39 273 1 324 343 9 9 chr11 47099380 47099488 -101683984 + HAL1b LINE L1 1196 1303 -45 2185 115 3 13 chr11 47099820 47099844 -101683628 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 47099844 47099871 -101683601 + (TG)n Simple_repeat Simple_repeat 1 27 0 2185 115 3 13 chr11 47099871 47100150 -101683322 - AluSx SINE Alu -34 278 1 333 283 131 10 chr11 47100534 47100633 -101682839 + MIR SINE MIR 36 146 -62 317 235 15 0 chr11 47100808 47100876 -101682596 - L2 LINE L2 -212 3060 2992 351 294 194 17 chr11 47101231 47101411 -101682061 + MIR SINE MIR 20 231 -31 383 308 144 19 chr11 47102266 47102474 -101680998 - MIR SINE MIR -4 258 25 578 259 38 38 chr11 47103064 47103249 -101680223 + L2 LINE L2 1146 1330 -1984 184 264 38 0 chr11 47104374 47104427 -101679045 + MIR SINE MIR 77 131 -77 6821 86 1 18 chr11 47104995 47105079 -101678393 - L1P LINE L1 -4214 1932 1848 2153 122 23 3 chr11 47105079 47105383 -101678089 + AluY SINE Alu 2 311 0 6821 86 1 18 chr11 47105383 47106320 -101677152 - L1P LINE L1 -4298 1848 928 30747 95 11 11 chr11 47106468 47111965 -101671507 - L1PA7 LINE L1 -56 6098 599 2112 146 0 0 chr11 47111978 47112273 -101671199 - AluSx SINE Alu -17 295 1 966 200 6 4 chr11 47113086 47113285 -101670187 - MIR SINE MIR -5 257 61 223 326 61 0 chr11 47113363 47113461 -101670011 - L2 LINE L2 0 3313 3210 541 243 179 75 chr11 47113481 47113885 -101669587 + MLT1J LTR MaLR 2 427 -19 1895 159 7 3 chr11 47113959 47114254 -101669218 + AluSx SINE Alu 1 296 -16 2391 95 0 3 chr11 47114357 47114662 -101668810 + AluSc SINE Alu 1 304 -5 180 250 50 0 chr11 47114682 47114722 -101668750 - L2 LINE L2 -13 3259 3218 * 373 295 45 0 chr11 47114690 47114802 -101668670 - MIR SINE MIR -17 245 129 452 342 60 82 chr11 47115010 47115684 -101667788 - L2 LINE L2 0 3272 2612 233 186 51 17 chr11 47115770 47115829 -101667643 - MIR3 SINE MIR -133 75 15 1853 215 43 5 chr11 47116990 47117366 -101666106 + MLT1B LTR MaLR 1 390 0 1588 236 62 2 chr11 47117662 47118094 -101665378 + L1MC4 LINE L1 7204 7661 -381 686 207 35 27 chr11 47118103 47118292 -101665180 + L1MC4 LINE L1 6261 6358 -1 292 250 156 23 chr11 47118474 47118602 -101664870 + MIR SINE MIR 93 237 -25 1981 153 3 10 chr11 47118609 47118917 -101664555 - AluJb SINE Alu -3 309 4 254 273 52 13 chr11 47119173 47119250 -101664222 + MIR SINE MIR 11 90 -172 543 286 35 18 chr11 47119257 47119428 -101664044 - MLT1I LTR MaLR -8 401 228 352 260 98 0 chr11 47119454 47119577 -101663895 - MLT1I LTR MaLR -274 135 1 310 287 38 32 chr11 47119581 47119738 -101663734 + MIR SINE MIR 89 246 -16 306 0 0 0 chr11 47119942 47119976 -101663496 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 191 311 0 0 chr11 47120054 47120099 -101663373 - L2 LINE L2 -19 3294 3250 2462 74 7 0 chr11 47121004 47121301 -101662171 + AluSp SINE Alu 1 299 -14 301 348 118 0 chr11 47121304 47121439 -101662033 + MIR SINE MIR 76 226 -36 371 306 35 35 chr11 47121653 47121823 -101661649 - L2 LINE L2 -189 3083 2914 351 270 68 14 chr11 47122078 47122226 -101661246 + L3 LINE CR1 1200 1355 -222 218 277 15 15 chr11 47123169 47123234 -101660238 + GA-rich Low_complexity Low_complexity 2 66 0 591 266 101 11 chr11 47123670 47123858 -101659614 - MIR SINE MIR -2 260 56 818 192 13 0 chr11 47123915 47124066 -101659406 - FRAM SINE Alu -23 153 1 521 295 90 0 chr11 47124085 47124241 -101659231 - MIR SINE MIR -65 197 28 235 175 18 0 chr11 47124559 47124616 -101658856 - L1MB3 LINE L1 -30 6153 6096 936 167 8 96 chr11 47124777 47125017 -101658455 - MER20 DNA MER1_type 0 219 1 337 307 129 82 chr11 47125039 47125479 -101657993 + L2 LINE L2 2812 3272 0 211 327 0 0 chr11 47125532 47125584 -101657888 - L2 LINE L2 -73 3199 3148 399 343 36 28 chr11 47125705 47125953 -101657519 - L2 LINE L2 -185 3087 2838 385 296 16 8 chr11 47126516 47126641 -101656831 - MIR SINE MIR -110 152 27 323 283 10 116 chr11 47126760 47126844 -101656628 - MIR SINE MIR -82 180 89 1817 176 0 10 chr11 47126844 47127156 -101656316 + AluJo SINE Alu 1 288 -24 323 283 10 116 chr11 47127156 47127170 -101656302 - MIR SINE MIR -173 89 75 1603 158 42 11 chr11 47127170 47127454 -101656018 + AluJb SINE Alu 1 293 -19 323 283 10 116 chr11 47127454 47127552 -101655920 - MIR SINE MIR -187 75 4 228 176 255 0 chr11 47127946 47127997 -101655475 - L2 LINE L2 -23 3290 3227 256 245 66 94 chr11 47128144 47128250 -101655222 - L2 LINE L2 -37 3235 3133 712 294 25 3 chr11 47129175 47129404 -101654068 - MIR SINE MIR -11 251 16 460 196 181 53 chr11 47129453 47129586 -101653886 - MER63 DNA MER1_type -285 777 2 308 309 161 18 chr11 47129643 47129811 -101653661 - L2 LINE L2 -436 2878 2687 510 96 0 0 chr11 47130251 47130324 -101653148 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 299 238 24 95 chr11 47130866 47130992 -101652480 + MIR SINE MIR 95 211 -51 200 211 0 0 chr11 47131374 47131412 -101652060 - L2 LINE L2 -18 3254 3217 817 246 170 44 chr11 47131514 47131920 -101651552 + L2 LINE L2 2857 3313 0 2339 127 49 42 chr11 47132146 47132571 -101650901 + MSTA LTR MaLR 1 428 0 2227 74 3 0 chr11 47132940 47133223 -101650249 - HERVL LTR ERVL -4275 1379 1096 638 197 0 0 chr11 47133609 47133746 -101649726 - AluSg SINE Alu -172 138 2 1948 256 70 17 chr11 47133807 47134085 -101649387 - L1M4 LINE L1 -2649 3497 3235 1362 178 23 58 chr11 47134085 47134394 -101649078 - AluJo SINE Alu -14 298 1 1948 256 70 17 chr11 47134394 47134934 -101648538 - L1M4 LINE L1 -2911 3235 2636 2751 16 0 0 chr11 47135199 47135509 -101647963 - AluYb8 SINE Alu -8 310 1 286 229 104 21 chr11 47136435 47136531 -101646941 - MIR3 SINE MIR -7 201 98 2204 100 0 10 chr11 47138124 47138434 -101645038 - AluSx SINE Alu -5 307 1 1391 166 80 53 chr11 47138553 47138854 -101644618 + AluJo SINE Alu 1 309 -3 460 171 125 11 chr11 47141678 47141766 -101641706 + L2 LINE L2 3172 3269 -3 5499 167 25 16 chr11 47141882 47142985 -101640487 + L1MD1 LINE L1 4901 6025 -217 2041 100 0 10 chr11 47142985 47143285 -101640187 - AluY SINE Alu -14 297 1 5499 167 25 16 chr11 47143285 47143506 -101639966 + L1MD1 LINE L1 6025 6242 0 300 270 27 0 chr11 47143679 47143753 -101639719 - L1MC4 LINE L1 -1378 6664 6589 373 265 38 0 chr11 47145087 47145174 -101638298 + MIR3 SINE MIR 77 167 -41 308 312 64 8 chr11 47146740 47146865 -101636607 - MIR3 SINE MIR -13 195 64 385 298 26 18 chr11 47147136 47147250 -101636222 + L2 LINE L2 3184 3298 -15 185 304 36 0 chr11 47147269 47147325 -101636147 - MIR SINE MIR -49 213 156 310 237 0 0 chr11 47148740 47148799 -101634673 + tRNA-Ile-ATT tRNA tRNA 1 59 -18 858 262 161 19 chr11 47149190 47149704 -101633768 - L2 LINE L2 0 3313 2746 1657 192 68 29 chr11 47149767 47150178 -101633294 + MLT1C LTR MaLR 37 463 -4 1429 261 161 14 chr11 47150412 47150971 -101632501 - L2 LINE L2 -609 2705 2065 683 244 152 52 chr11 47151974 47152453 -101631019 - L1ME4a LINE L1 -3 6118 5592 307 242 11 66 chr11 47152457 47152548 -101630924 - L1MC4 LINE L1 -1343 6699 6614 230 321 86 49 chr11 47152571 47152814 -101630658 - L1ME4a LINE L1 -562 5559 5308 376 265 53 30 chr11 47153587 47153719 -101629753 + MIR3 SINE MIR 65 199 -9 1996 109 6 38 chr11 47154562 47154882 -101628590 - AluSx SINE Alu -2 310 1 261 295 205 52 chr11 47156918 47157119 -101626353 + L3b LINE CR1 1119 1378 -205 1867 106 0 81 chr11 47157119 47157440 -101626032 + AluSq SINE Alu 1 295 -18 261 295 205 52 chr11 47157440 47157526 -101625946 + L3b LINE CR1 1378 1450 -133 1341 201 48 0 chr11 47157531 47157804 -101625668 - AluJo SINE Alu -10 302 17 200 367 0 0 chr11 47158013 47158073 -101625399 - L2 LINE L2 -218 3054 2995 2098 101 3 3 chr11 47158732 47159029 -101624443 - AluSc SINE Alu -12 297 1 225 0 0 0 chr11 47159029 47159054 -101624418 + (T)n Simple_repeat Simple_repeat 1 25 0 314 54 0 0 chr11 47159054 47159091 -101624381 - LTR8 LTR ERV1 -107 584 548 1890 176 27 0 chr11 47159176 47159511 -101623961 + MER2 DNA MER2_type 1 344 0 853 208 6 18 chr11 47159748 47159916 -101623556 + FAM SINE Alu 1 166 -9 425 227 45 0 chr11 47160231 47160319 -101623153 - AluJo SINE Alu -100 212 121 344 321 0 37 chr11 47160602 47160762 -101622710 + MIR SINE MIR 3 154 -57 205 289 53 13 chr11 47160782 47160858 -101622614 - L2 LINE L2 0 3313 3235 539 264 45 60 chr11 47161808 47162074 -101621398 + MIR SINE MIR 2 256 -6 831 225 97 18 chr11 47162129 47162356 -101621116 + MIR SINE MIR 15 259 -3 226 139 23 0 chr11 47162881 47162924 -101620548 + L2 LINE L2 3228 3271 -1 225 0 0 0 chr11 47162956 47162981 -101620491 + (T)n Simple_repeat Simple_repeat 1 25 0 311 311 22 11 chr11 47165161 47165251 -101618221 - MIR3 SINE MIR -5 203 113 26 0 0 0 chr11 47165702 47165728 -101617744 + AT_rich Low_complexity Low_complexity 1 26 0 2092 93 7 0 chr11 47166091 47166369 -101617103 - AluSx SINE Alu -31 281 2 202 216 0 0 chr11 47166865 47166902 -101616570 + (CA)n Simple_repeat Simple_repeat 1 37 0 502 259 92 17 chr11 47167125 47167299 -101616173 - MIR3 SINE MIR -4 204 18 8535 115 2 11 chr11 47169596 47170826 -101612646 - L1P LINE L1 -4569 1577 359 1803 145 51 0 chr11 47170827 47171103 -101612369 - L1P LINE L1 -5846 300 11 783 123 0 9 chr11 47171120 47171234 -101612238 - AluJo SINE Alu -187 125 13 1638 186 3 6 chr11 47171268 47171580 -101611892 - AluSx SINE Alu 0 312 2 314 207 0 0 chr11 47171742 47171800 -101611672 - MLT1B LTR MaLR -6 384 327 1235 183 126 19 chr11 47173042 47173166 -101610306 + AluJo SINE Alu 3 112 -190 207 0 0 0 chr11 47173166 47173189 -101610283 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1235 183 126 19 chr11 47173189 47173327 -101610145 + AluJo SINE Alu 112 293 -9 652 250 64 16 chr11 47173341 47173529 -101609943 - MIR SINE MIR -44 218 22 557 260 24 0 chr11 47173915 47174042 -101609430 + MIR SINE MIR 68 197 -65 626 316 107 8 chr11 47174293 47174556 -101608916 + MLT1K LTR MaLR 42 330 -258 529 216 23 76 chr11 47174732 47174846 -101608626 - MER103 DNA DNA -3 163 59 2207 75 0 46 chr11 47174846 47175152 -101608320 - AluSp SINE Alu -21 292 1 529 216 23 76 chr11 47175152 47175208 -101608264 - MER103 DNA DNA -107 59 2 423 174 224 0 chr11 47175214 47175312 -101608160 - L2 LINE L2 -1 3312 3193 8999 63 4 15 chr11 47176229 47177356 -101606116 - HERVL-A1 LTR ERVL -4539 1115 1 318 100 0 20 chr11 47177356 47177406 -101606066 - MLT2A1 LTR ERVL 0 453 405 2793 92 22 30 chr11 47177619 47178021 -101605451 - MLT2A1 LTR ERVL -45 399 1 1824 256 59 28 chr11 47178097 47178672 -101604800 + MLT1E LTR MaLR 1 593 0 1367 177 107 10 chr11 47178936 47179235 -101604237 + MER2 DNA MER2_type 16 343 -2 289 255 138 55 chr11 47179381 47179526 -101603946 + MIR SINE MIR 106 262 0 299 325 87 87 chr11 47179841 47180220 -101603252 - MLT1K LTR MaLR -18 570 192 695 295 118 25 chr11 47180374 47180740 -101602732 + MLT1L LTR MaLR 216 615 0 235 270 170 20 chr11 47181192 47181292 -101602180 + MIR SINE MIR 32 146 -62 342 221 63 0 chr11 47181339 47181434 -101602038 + MIR SINE MIR 148 248 -14 327 331 0 7 chr11 47182031 47182182 -101601290 + CT-rich Low_complexity Low_complexity 2 151 0 364 318 0 7 chr11 47182221 47182372 -101601100 + CT-rich Low_complexity Low_complexity 1 150 0 346 286 10 0 chr11 47182713 47182811 -101600661 - MIR3 SINE MIR -52 156 58 248 320 203 0 chr11 47182799 47182952 -101600520 + MIR SINE MIR 79 262 0 * 452 206 122 0 chr11 47183675 47183782 -101599690 - L2 LINE L2 0 3272 3153 310 188 38 25 chr11 47184453 47184533 -101598939 - MIR SINE MIR -124 138 58 282 244 13 39 chr11 47184604 47184682 -101598790 + MIR3 SINE MIR 93 168 -40 231 36 0 0 chr11 47184889 47184917 -101598555 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 420 315 8 0 chr11 47186231 47186358 -101597114 + L2 LINE L2 3145 3272 0 636 262 53 34 chr11 47186391 47186597 -101596875 - MIR SINE MIR -45 217 8 336 333 51 6 chr11 47187348 47187504 -101595968 - L2 LINE L2 0 3313 3151 866 318 67 13 chr11 47187684 47188147 -101595325 + L1ME3A LINE L1 5465 5952 -218 181 125 31 0 chr11 47188183 47188215 -101595257 + MIR SINE MIR 118 150 -112 193 281 202 0 chr11 47188900 47189014 -101594458 - MIR SINE MIR -13 249 113 443 265 22 15 chr11 47189086 47189222 -101594250 + MIR3 SINE MIR 20 156 -52 1257 283 100 40 chr11 47189228 47189779 -101593693 - MLT1E LTR MaLR -9 584 1 1185 134 143 5 chr11 47190218 47190427 -101593045 + AluSq SINE Alu 1 238 -75 232 122 61 0 chr11 47191371 47191420 -101592052 + L2 LINE L2 3007 3058 -214 319 256 71 48 chr11 47192494 47192688 -101590784 + MIR3 SINE MIR 9 206 -56 267 321 19 0 chr11 47197322 47197428 -101586044 - MIR3 SINE MIR -7 201 94 26 0 0 0 chr11 47198829 47198855 -101584617 + AT_rich Low_complexity Low_complexity 1 26 0 231 36 0 0 chr11 47202280 47202308 -101581164 + (TG)n Simple_repeat Simple_repeat 2 29 0 337 337 29 35 chr11 47202456 47202628 -101580844 + MIR SINE MIR 36 206 -56 1511 192 72 28 chr11 47202844 47203203 -101580269 - MLT1B LTR MaLR 0 390 16 232 398 39 0 chr11 47203896 47203999 -101579473 + L2 LINE L2 3149 3255 -17 870 206 67 70 chr11 47204156 47204500 -101578972 - L1ME1 LINE L1 -194 6039 5694 * 3916 238 146 11 chr11 47204489 47205019 -101578453 - L1ME1 LINE L1 -2206 4009 3552 1702 156 26 66 chr11 47205019 47205397 -101578075 - MLT1A1 LTR MaLR -2 363 1 3916 238 146 11 chr11 47205397 47206646 -101576826 - L1ME1 LINE L1 -2663 3552 2027 2479 273 103 20 chr11 47206657 47207826 -101575646 + L2 LINE L2 2031 3312 -1 232 293 71 20 chr11 47209167 47209266 -101574206 - MIR SINE MIR -61 201 98 230 298 0 53 chr11 47209417 47209511 -101573961 + L2 LINE L2 3185 3273 -40 2339 96 3 0 chr11 47209520 47209811 -101573661 - AluY SINE Alu -19 292 1 1949 170 3 7 chr11 47210302 47210636 -101572836 + AluJo SINE Alu 1 333 0 2289 107 0 16 chr11 47212047 47212355 -101571117 + AluSq SINE Alu 1 303 -10 952 122 0 0 chr11 47213417 47213540 -101569932 - AluSq/x SINE Alu -189 123 1 182 241 19 19 chr11 47213736 47213790 -101569682 - L2 LINE L2 -304 2968 2915 2579 34 10 0 chr11 47213799 47214093 -101569379 + AluY SINE Alu 1 297 -14 1529 185 32 101 chr11 47214804 47214964 -101568508 + MER63B DNA MER1_type 1 170 -892 1586 106 0 0 chr11 47214964 47215192 -101568280 + AluSg/x SINE Alu 84 311 0 1529 185 32 101 chr11 47215192 47215468 -101568004 + MER63B DNA MER1_type 170 408 -28 367 227 200 20 chr11 47216125 47216275 -101567197 - MIR SINE MIR -3 259 83 449 283 3 2 chr11 47216555 47216696 -101566776 + MIR SINE MIR 19 157 -61 229 368 37 6 chr11 47217536 47217699 -101565773 - MIR3 SINE MIR -36 172 5 203 255 167 10 chr11 47218448 47218550 -101564922 + MIR3 SINE MIR 86 203 -5 389 20 20 0 chr11 47218939 47218989 -101564483 + (TG)n Simple_repeat Simple_repeat 2 52 0 2086 142 0 13 chr11 47219038 47219340 -101564132 + AluSx SINE Alu 1 298 -14 436 199 57 71 chr11 47219347 47219488 -101563984 + MIR SINE MIR 124 262 0 258 32 0 0 chr11 47219498 47219529 -101563943 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2087 106 22 0 chr11 47219531 47219806 -101563666 - AluSp SINE Alu -32 281 1 315 219 42 52 chr11 47219900 47220092 -101563380 + MER113 DNA MER1_type? 53 242 -279 1025 193 0 6 chr11 47220138 47220314 -101563158 + AluJo SINE Alu 122 296 -16 344 248 178 0 chr11 47220337 47220466 -101563006 + L1MD2 LINE L1 6194 6345 -14 643 266 145 8 chr11 47220474 47220722 -101562750 + MER113 DNA MER1_type? 240 521 0 266 343 76 9 chr11 47220922 47221027 -101562445 + MIR SINE MIR 36 147 -61 563 227 9 0 chr11 47221153 47221263 -101562209 + MER81 DNA DNA 2 112 -2 1118 148 7 76 chr11 47221280 47221571 -101561901 + MER33 DNA MER1_type 37 307 -17 401 299 102 6 chr11 47222961 47223118 -101560354 + MIR3 SINE MIR 28 199 -9 457 271 29 67 chr11 47223908 47224118 -101559354 + L2 LINE L2 3104 3305 -8 1200 257 56 45 chr11 47224369 47224813 -101558659 - LTR33 LTR ERVL -72 449 1 1029 239 63 41 chr11 47224862 47225357 -101558115 - MLT1G LTR MaLR -36 519 10 190 306 14 28 chr11 47225568 47225640 -101557832 - MIR SINE MIR -59 149 79 899 334 45 24 chr11 47226187 47226561 -101556911 + MER115 DNA AcHobo 54 435 -258 827 156 118 57 chr11 47226823 47227034 -101556438 - MSTA LTR MaLR -2 426 203 499 165 174 0 chr11 47227363 47227472 -101556000 - MIR SINE MIR -88 174 47 2662 135 39 11 chr11 47228352 47228818 -101554654 - L1MB2 LINE L1 0 6171 5693 361 291 19 0 chr11 47228882 47228985 -101554487 - MIR SINE MIR -109 153 49 383 233 11 22 chr11 47229133 47229223 -101554249 + MIR SINE MIR 4 92 -170 227 133 0 44 chr11 47229223 47229268 -101554204 + MER117 DNA MER1_type 117 159 -38 1715 174 10 10 chr11 47229650 47230130 -101553342 - AluJb SINE Alu 0 312 14 216 245 19 0 chr11 47231014 47231067 -101552405 + G-rich Low_complexity Low_complexity 2 55 0 304 295 103 58 chr11 47231199 47231355 -101552117 - MIR3 SINE MIR -23 185 23 417 297 101 72 chr11 47231848 47232245 -101551227 + MLT1K LTR MaLR 121 534 -54 480 35 0 0 chr11 47232245 47232303 -101551169 + (CTATT)n Simple_repeat Simple_repeat 2 59 0 417 297 101 72 chr11 47232303 47232360 -101551112 + MLT1K LTR MaLR 534 588 0 789 205 6 93 chr11 47233175 47233382 -101550090 - MIR SINE MIR -54 208 18 417 279 60 0 chr11 47234389 47234523 -101548949 + MIR3 SINE MIR 54 193 -15 422 316 94 19 chr11 47234649 47234861 -101548611 - MIR SINE MIR 0 262 35 239 263 17 143 chr11 47235501 47235676 -101547796 + LTR67 LTR ERVL 37 189 -368 672 219 89 24 chr11 47235989 47236158 -101547314 - MIR SINE MIR -70 192 13 1038 167 0 0 chr11 47236174 47236336 -101547136 + FRAM SINE Alu 1 162 -14 2166 169 129 24 chr11 47236339 47236796 -101546676 + MLT1D LTR MaLR 1 505 0 236 320 0 0 chr11 47236874 47236952 -101546520 + L2 LINE L2 3195 3272 0 2350 107 0 0 chr11 47237571 47237870 -101545602 - AluSq SINE Alu -14 299 1 465 140 54 0 chr11 47238001 47238094 -101545378 + L1MD3 LINE L1 7898 7995 0 253 243 162 0 chr11 47238234 47238308 -101545164 + L2 LINE L2 3141 3226 -46 461 266 158 40 chr11 47238308 47238485 -101544987 - MIR SINE MIR -31 231 34 559 266 85 16 chr11 47238528 47238716 -101544756 + MIR SINE MIR 36 236 -26 357 24 0 0 chr11 47238761 47238803 -101544669 + (ATG)n Simple_repeat Simple_repeat 1 42 0 640 297 160 33 chr11 47239968 47240723 -101542749 - L2 LINE L2 -109 3204 2354 537 144 0 0 chr11 47240781 47240871 -101542601 + L1 LINE L1 5194 5283 -863 6238 72 2 0 chr11 47240889 47241691 -101541781 + THE1A-int LTR MaLR 777 1580 0 2535 110 6 8 chr11 47241691 47242047 -101541425 + THE1A LTR MaLR 1 355 0 681 274 49 63 chr11 47242048 47242479 -101540993 - L1MC5 LINE L1 -62 7899 7475 1948 154 0 61 chr11 47242479 47242855 -101540617 + MLT1A1 LTR MaLR 9 361 -4 344 303 6 37 chr11 47242858 47243020 -101540452 - L1MC5 LINE L1 -491 7470 7314 298 233 17 0 chr11 47244051 47244111 -101539361 - L2 LINE L2 -63 3209 3149 387 319 1 29 chr11 47244412 47244550 -101538922 - MIR SINE MIR -55 153 18 316 289 94 0 chr11 47244559 47244687 -101538785 - MIR3 SINE MIR -45 163 24 469 288 12 6 chr11 47245215 47245375 -101538097 - MER103 DNA DNA -2 164 4 209 316 126 0 chr11 47245488 47245583 -101537889 + L3 LINE CR1 1178 1284 -293 596 231 0 31 chr11 47245720 47245850 -101537622 + AluJb SINE Alu 2 127 -185 378 242 84 33 chr11 47245864 47246079 -101537393 + L1ME4a LINE L1 5600 5825 -296 1812 130 0 75 chr11 47246082 47246458 -101537014 + AluSx SINE Alu 1 353 0 181 329 137 0 chr11 47246579 47246652 -101536820 - MER5C DNA MER1_type -1 323 241 249 252 92 0 chr11 47246696 47246827 -101536645 + L1ME4a LINE L1 5968 6110 -11 2062 84 9 69 chr11 47246827 47247007 -101536465 - L1MA2 LINE L1 0 6304 6153 2248 116 9 35 chr11 47247007 47247326 -101536146 - AluSx SINE Alu 0 312 2 2062 84 9 69 chr11 47247326 47247492 -101535980 - L1MA2 LINE L1 -151 6153 5979 430 274 30 49 chr11 47248525 47248689 -101534783 - MIR SINE MIR -82 180 20 229 278 41 55 chr11 47249056 47249169 -101534303 + MIR3 SINE MIR 38 159 -49 487 290 6 35 chr11 47249179 47249348 -101534124 + MER5A DNA MER1_type 26 189 0 782 256 105 84 chr11 47250130 47250595 -101532877 - MER77 LTR ERV1 -7 598 194 * 2310 82 65 54 chr11 47250583 47250951 -101532521 + MER48 LTR ERV1 16 387 0 226 180 16 49 chr11 47250990 47251051 -101532421 - MER21B LTR ERV1 -671 192 134 499 231 9 45 chr11 47251076 47251235 -101532237 - MER77 LTR ERV1 -409 196 5 1619 171 44 24 chr11 47251317 47251610 -101531862 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr11 47252489 47252509 -101530963 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 290 291 100 0 chr11 47252718 47252828 -101530644 - L2 LINE L2 0 3272 3152 * 500 280 237 27 chr11 47252804 47253002 -101530470 + L2 LINE L2 2951 3106 -207 180 77 0 0 chr11 47253002 47253028 -101530444 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 500 280 237 27 chr11 47253028 47253129 -101530343 + L2 LINE L2 3106 3313 0 1011 280 28 4 chr11 47253782 47254032 -101529440 + MIR SINE MIR 7 262 0 480 274 78 59 chr11 47254349 47254553 -101528919 + L1MC/D LINE L1 4256 4463 -1683 988 148 7 19 chr11 47254553 47254708 -101528764 + AluJb SINE Alu 1 153 -159 1142 179 5 5 chr11 47254808 47255003 -101528469 + AluJb SINE Alu 102 296 -16 317 297 118 21 chr11 47255030 47255556 -101527916 + L1MC/D LINE L1 4487 5063 -1083 26 0 0 0 chr11 47255686 47255712 -101527760 + AT_rich Low_complexity Low_complexity 1 26 0 572 262 58 15 chr11 47255765 47256003 -101527469 + L1MC/D LINE L1 5352 5597 -572 1199 265 28 56 chr11 47256096 47256489 -101526983 + LTR16A LTR ERVL 57 438 -12 695 304 25 19 chr11 47256810 47257301 -101526171 + HERV16 LTR ERVL 351 881 -4115 979 274 11 7 chr11 47257303 47257573 -101525899 + HERV16 LTR ERVL 1589 1859 -3137 1659 290 54 25 chr11 47257584 47258389 -101525083 + HERV16 LTR ERVL 2569 3396 -1911 949 326 54 20 chr11 47258421 47259419 -101524053 + HERV16 LTR ERVL 3516 4518 -1136 338 324 59 7 chr11 47259788 47259924 -101523548 + MIR SINE MIR 47 189 -73 2419 107 0 0 chr11 47259926 47260236 -101523236 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr11 47260249 47260273 -101523199 + AT_rich Low_complexity Low_complexity 1 24 0 1271 174 15 23 chr11 47260370 47260634 -101522838 - MLT1D LTR MaLR -243 262 1 411 303 26 20 chr11 47261047 47261199 -101522273 + MIR SINE MIR 107 259 -3 1018 262 80 25 chr11 47261278 47261640 -101521832 + MLT1J1 LTR MaLR 63 444 -2 391 289 147 49 chr11 47261851 47262076 -101521396 - MIR SINE MIR 0 262 16 776 244 81 102 chr11 47262643 47263053 -101520419 - MLT1H LTR MaLR -13 536 136 415 279 10 10 chr11 47263267 47263371 -101520101 - MIR SINE MIR -86 122 19 2434 55 0 23 chr11 47263446 47263755 -101519717 - AluY SINE Alu -7 304 3 338 313 22 15 chr11 47263883 47264017 -101519455 - MIR SINE MIR 0 262 128 485 223 148 55 chr11 47264583 47264839 -101518633 + L2 LINE L2 2348 2627 -687 1874 191 100 19 chr11 47264841 47265261 -101518211 + MLT1C LTR MaLR 2 455 -12 1869 151 0 14 chr11 47265619 47265897 -101517575 + AluSx SINE Alu 1 274 -38 462 143 0 0 chr11 47265900 47265977 -101517495 + AluS SINE Alu 224 300 -10 203 313 7 116 chr11 47266073 47266220 -101517252 + MIR3 SINE MIR 13 143 -65 569 302 0 80 chr11 47266225 47266437 -101517035 - MIR SINE MIR -61 201 7 275 243 136 97 chr11 47267003 47267209 -101516263 - MIR SINE MIR -35 227 14 201 161 48 16 chr11 47268254 47268316 -101515156 + (CA)n Simple_repeat Simple_repeat 2 65 0 332 137 65 24 chr11 47268360 47268484 -101514988 + (CA)n Simple_repeat Simple_repeat 1 129 0 214 161 48 16 chr11 47268520 47268644 -101514828 + (CA)n Simple_repeat Simple_repeat 2 129 0 182 147 27 27 chr11 47268696 47268771 -101514701 + (CA)n Simple_repeat Simple_repeat 1 75 0 219 149 0 60 chr11 47268786 47268853 -101514619 + (CA)n Simple_repeat Simple_repeat 1 63 0 1504 206 105 52 chr11 47268901 47268998 -101514474 + MLT1D LTR MaLR 1 91 -414 1822 186 41 19 chr11 47268998 47269364 -101514108 - MLT1A2 LTR MaLR 0 374 1 1504 206 105 52 chr11 47269364 47269732 -101513740 + MLT1D LTR MaLR 91 491 -14 2307 135 89 5 chr11 47269850 47270242 -101513230 + MSTA LTR MaLR 4 428 0 198 0 0 0 chr11 47270307 47270329 -101513143 + (T)n Simple_repeat Simple_repeat 1 22 0 302 305 30 84 chr11 47270931 47271098 -101512374 + MIR3 SINE MIR 1 158 -50 492 311 120 45 chr11 47271107 47271573 -101511899 - L2 LINE L2 -2 3311 2811 982 251 21 11 chr11 47271604 47271990 -101511482 - MLT1J LTR MaLR -87 424 3 563 292 110 71 chr11 47272052 47272565 -101510907 + L2 LINE L2 2342 2884 -388 2251 113 6 3 chr11 47272565 47272876 -101510596 - AluSx SINE Alu 0 312 1 563 292 110 71 chr11 47272876 47272999 -101510473 + L2 LINE L2 2884 3001 -271 315 171 26 66 chr11 47273710 47273786 -101509686 + L1MCa LINE L1 1995 2067 -4359 * 351 224 10 71 chr11 47273763 47273861 -101509611 + L1MC4 LINE L1 6892 6983 -1339 2238 115 0 10 chr11 47273887 47274182 -101509290 - AluSx SINE Alu -20 292 1 398 291 12 55 chr11 47274228 47274393 -101509079 + MIR3 SINE MIR 40 197 -11 312 256 55 42 chr11 47274440 47274708 -101508764 - MLT1I LTR MaLR -2 407 72 320 232 36 80 chr11 47275412 47275524 -101507948 - MIR SINE MIR -19 243 137 320 237 65 11 chr11 47275612 47275705 -101507767 + LTR67 LTR ERVL 352 449 -108 308 314 46 23 chr11 47275831 47276006 -101507466 + L2 LINE L2 2550 2728 -586 182 194 0 0 chr11 47276248 47276279 -101507193 + MIR SINE MIR 217 247 -15 204 224 52 0 chr11 47276282 47276340 -101507132 + (AATTG)n Simple_repeat Simple_repeat 1 61 0 377 312 3 85 chr11 47276410 47276692 -101506780 + MER102a DNA MER1_type 62 320 -10 215 265 239 0 chr11 47276714 47276831 -101506641 - MIR3 SINE MIR -62 146 2 253 284 130 25 chr11 47277486 47277517 -101505955 + L2 LINE L2 2689 2715 -599 2448 67 0 22 chr11 47277517 47277832 -101505640 + AluY SINE Alu 3 310 -1 253 284 130 25 chr11 47277832 47277962 -101505510 + L2 LINE L2 2715 2867 -447 330 227 0 0 chr11 47277981 47278047 -101505425 - L2 LINE L2 -1 3312 3247 219 69 0 0 chr11 47278264 47278293 -101505179 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1010 265 117 27 chr11 47278294 47278474 -101504998 - L2 LINE L2 -12 3301 3139 708 194 0 0 chr11 47278474 47278598 -101504874 + FLAM_A SINE Alu 1 124 -9 2006 152 0 10 chr11 47278605 47278907 -101504565 + AluJb SINE Alu 1 299 -13 1010 265 117 27 chr11 47278907 47279240 -101504232 - L2 LINE L2 -179 3134 2725 1283 238 19 67 chr11 47279712 47280086 -101503386 + MLT1A2 LTR MaLR 19 374 0 297 204 25 117 chr11 47280086 47280142 -101503330 - Charlie7 DNA MER1_type -1 2611 2551 1708 188 3 0 chr11 47280142 47280435 -101503037 + AluJo SINE Alu 5 298 -14 297 204 25 117 chr11 47280435 47280540 -101502932 - Charlie7 DNA MER1_type -61 2551 2465 * 311 231 41 41 chr11 47280510 47280631 -101502841 - Charlie7 DNA MER1_type -2457 155 35 219 69 0 0 chr11 47280696 47280725 -101502747 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 286 244 146 0 chr11 47280908 47280990 -101502482 + L2 LINE L2 3220 3313 0 252 0 0 0 chr11 47281571 47281599 -101501873 + (TG)n Simple_repeat Simple_repeat 2 29 0 288 321 12 0 chr11 47281604 47281688 -101501784 + GA-rich Low_complexity Low_complexity 2 86 0 280 275 92 17 chr11 47281759 47281879 -101501593 + MIR3 SINE MIR 2 130 -78 230 292 26 53 chr11 47282478 47282591 -101500881 - MIR3 SINE MIR -96 112 3 180 0 0 0 chr11 47282604 47282624 -101500848 + (GCCTG)n Simple_repeat Simple_repeat 2 21 0 271 254 0 0 chr11 47282630 47282693 -101500779 + MIR SINE MIR 84 146 -62 208 284 167 10 chr11 47283197 47283299 -101500173 - MIR SINE MIR -113 149 32 1840 192 32 35 chr11 47283309 47283684 -101499788 - MLT1A2 LTR MaLR 0 374 1 211 284 104 0 chr11 47283921 47283988 -101499484 + MIR SINE MIR 108 181 -81 228 154 77 46 chr11 47284977 47285042 -101498430 - MIR SINE MIR -1 261 195 493 303 20 20 chr11 47285295 47285447 -101498025 - MIR SINE MIR -55 207 56 2398 77 0 0 chr11 47285894 47286193 -101497279 + AluSg SINE Alu 1 299 -11 282 116 0 0 chr11 47286507 47286550 -101496922 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 378 290 57 8 chr11 47286568 47286692 -101496780 - L2 LINE L2 -18 3254 3125 614 307 100 17 chr11 47286726 47287016 -101496456 + L2 LINE L2 3000 3313 0 1994 111 0 7 chr11 47287169 47287604 -101495868 + AluSg SINE Alu 3 435 0 193 159 0 45 chr11 47287608 47287652 -101495820 - L2 LINE L2 -340 2973 2932 514 303 28 22 chr11 47287799 47287977 -101495495 + MIR SINE MIR 77 255 -7 1801 171 10 3 chr11 47287977 47288286 -101495186 + AluJo SINE Alu 1 311 -1 217 297 31 0 chr11 47289259 47289323 -101494149 + MIR SINE MIR 78 143 -65 247 324 72 18 chr11 47289417 47289528 -101493944 + MIR SINE MIR 108 224 -38 265 314 0 39 chr11 47289615 47289717 -101493755 + L2 LINE L2 3122 3219 -94 1188 285 57 19 chr11 47289747 47290251 -101493221 - LTR33A LTR ERVL -4 519 29 242 317 24 0 chr11 47291068 47291150 -101492322 + L2 LINE L2 3186 3269 -3 1778 152 4 0 chr11 47291870 47292140 -101491332 - AluSx SINE Alu -39 273 3 28 0 0 0 chr11 47292245 47292273 -101491199 + AT_rich Low_complexity Low_complexity 1 28 0 192 267 0 0 chr11 47292273 47292333 -101491139 + L2 LINE L2 2989 3048 -224 374 218 23 11 chr11 47292455 47292542 -101490930 + MIR SINE MIR 26 113 -149 268 222 111 0 chr11 47293421 47293493 -101489979 + L2 LINE L2 3183 3262 -10 213 300 0 0 chr11 47293825 47293875 -101489597 + L2 LINE L2 3252 3301 -12 1770 184 3 0 chr11 47293890 47294200 -101489272 - AluJo SINE Alu -1 311 1 191 276 13 26 chr11 47294721 47294797 -101488675 + MIR SINE MIR 108 182 -80 197 181 193 0 chr11 47295175 47295258 -101488214 + MIR3 SINE MIR 58 156 -52 2118 93 0 14 chr11 47295446 47295737 -101487735 - AluSg SINE Alu -21 289 3 306 224 15 0 chr11 47296789 47296856 -101486616 - MER113 DNA MER1_type? -123 398 331 426 250 19 0 chr11 47297552 47297656 -101485816 + MIR SINE MIR 35 140 -122 359 193 59 0 chr11 47297773 47297892 -101485580 + (TA)n Simple_repeat Simple_repeat 2 127 0 370 268 144 7 chr11 47297894 47298047 -101485425 - MIR SINE MIR -64 198 25 1652 184 7 10 chr11 47298109 47298419 -101485053 + AluJb SINE Alu 4 312 0 368 186 24 32 chr11 47298422 47298546 -101484926 + GA-rich Low_complexity Low_complexity 3 125 0 421 351 69 10 chr11 47299171 47299373 -101484099 + MIR SINE MIR 48 261 -1 28 0 0 0 chr11 47300666 47300694 -101482778 + AT_rich Low_complexity Low_complexity 1 28 0 563 284 45 0 chr11 47300702 47300878 -101482594 + L1ME3 LINE L1 5976 6159 -3 223 315 222 9 chr11 47301142 47301250 -101482222 + MIR SINE MIR 58 188 -74 315 323 47 16 chr11 47302080 47302207 -101481265 + MIR SINE MIR 22 152 -56 2150 113 0 3 chr11 47302309 47302609 -101480863 - AluSx SINE Alu -13 299 1 185 229 14 57 chr11 47302703 47302773 -101480699 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 47302980 47303008 -101480464 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1492 153 71 0 chr11 47303017 47303272 -101480200 - AluJb SINE Alu -39 273 1 2060 115 3 13 chr11 47303740 47303764 -101479708 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 47303764 47303791 -101479681 + (TG)n Simple_repeat Simple_repeat 1 27 0 2060 115 3 13 chr11 47303791 47304070 -101479402 - AluSx SINE Alu -34 278 1 301 290 120 10 chr11 47304452 47304552 -101478920 + MIR SINE MIR 36 146 -62 194 288 0 17 chr11 47304588 47304647 -101478825 - L2 LINE L2 -2 3270 3213 300 235 15 0 chr11 47304718 47304786 -101478686 - L2 LINE L2 -212 3060 2992 337 294 194 17 chr11 47305141 47305321 -101478151 + MIR SINE MIR 20 231 -31 367 318 132 16 chr11 47306177 47306366 -101477106 - MIR SINE MIR -4 258 48 552 297 16 16 chr11 47306975 47307160 -101476312 + L2 LINE L2 1146 1330 -1984 621 214 14 14 chr11 47309012 47309157 -101474315 - MIR SINE MIR -69 193 49 1017 213 55 74 chr11 47310309 47310503 -101472969 + L2 LINE L2 2952 3148 -165 594 222 33 72 chr11 47310503 47310683 -101472789 + MER69A DNA AcHobo 1 173 -4 1017 213 55 74 chr11 47310683 47310773 -101472699 + L2 LINE L2 3148 3230 -83 2208 110 7 0 chr11 47310773 47311073 -101472399 - AluSx SINE Alu -10 302 1 1017 213 55 74 chr11 47311073 47311153 -101472319 + L2 LINE L2 3230 3310 -3 402 325 89 82 chr11 47311212 47311639 -101471833 + L2 LINE L2 2843 3272 0 201 204 37 19 chr11 47311699 47311753 -101471719 - MIR3 SINE MIR -1 207 153 263 143 0 0 chr11 47311829 47311871 -101471601 + MER4-int LTR ERV1 1111 1152 -5446 474 271 29 7 chr11 47312025 47312165 -101471307 - MIR3 SINE MIR -7 201 59 320 257 93 43 chr11 47312670 47312810 -101470662 - L1ME4a LINE L1 0 6121 5975 386 358 130 7 chr11 47312824 47313109 -101470363 - L2 LINE L2 -39 3233 2914 414 0 0 0 chr11 47313294 47313340 -101470132 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 31 26 0 0 chr11 47313359 47313397 -101470075 + AT_rich Low_complexity Low_complexity 1 38 0 391 300 43 36 chr11 47313651 47313791 -101469681 - MLT1K LTR MaLR -350 238 98 373 242 45 70 chr11 47313794 47313951 -101469521 + L1ME3 LINE L1 5944 6096 -66 2036 117 7 0 chr11 47313992 47314290 -101469182 + AluSx SINE Alu 3 302 -10 1771 165 0 22 chr11 47314290 47314606 -101468866 + AluJo SINE Alu 3 311 -1 330 340 177 0 chr11 47315250 47315453 -101468019 + MIR SINE MIR 3 241 -21 1728 173 0 13 chr11 47315974 47316280 -101467192 - AluJo SINE Alu -10 302 1 180 143 0 0 chr11 47316297 47316325 -101467147 + L2 LINE L2 3223 3250 -22 1898 155 36 41 chr11 47316423 47316810 -101466662 - MLT1B LTR MaLR -5 385 1 1829 147 0 20 chr11 47317687 47317986 -101465486 + AluSx SINE Alu 1 293 -19 926 242 26 26 chr11 47318773 47319004 -101464468 - MIR SINE MIR -12 250 20 638 200 86 0 chr11 47319022 47319162 -101464310 + MER3 DNA MER1_type 45 196 -13 231 260 39 48 chr11 47319182 47319286 -101464186 + L1ME LINE L1 5522 5624 -497 449 300 67 22 chr11 47319324 47319504 -101463968 - MIR SINE MIR -46 216 29 236 195 0 0 chr11 47319845 47319886 -101463586 + MIR SINE MIR 116 156 -106 383 248 177 0 chr11 47320766 47320879 -101462593 - MIR SINE MIR -79 183 51 286 310 26 9 chr11 47321516 47321629 -101461843 - MIR3 SINE MIR -3 205 91 204 306 77 60 chr11 47322028 47322211 -101461261 - MIR SINE MIR -12 250 65 183 42 0 0 chr11 47322526 47322550 -101460922 + (T)n Simple_repeat Simple_repeat 1 24 0 600 284 0 6 chr11 47324232 47324394 -101459078 + MIR SINE MIR 38 198 -64 201 235 59 0 chr11 47324409 47324460 -101459012 - MIR SINE MIR -8 254 201 219 244 200 35 chr11 47324607 47324722 -101458750 + L2 LINE L2 3164 3297 -16 380 216 22 112 chr11 47325297 47325431 -101458041 - L2 LINE L2 -1 3271 3150 510 252 66 45 chr11 47325978 47326203 -101457269 + MIR SINE MIR 10 245 -17 356 293 40 0 chr11 47326228 47326327 -101457145 + L2 LINE L2 3143 3245 -27 256 236 0 0 chr11 47326337 47326392 -101457080 - L2 LINE L2 -1 3271 3217 22 0 0 0 chr11 47326405 47326427 -101457045 + AT_rich Low_complexity Low_complexity 1 22 0 183 198 87 119 chr11 47326707 47326833 -101456639 + MIR SINE MIR 106 227 -35 327 260 281 7 chr11 47326889 47327035 -101456437 + MER5A DNA MER1_type 4 189 0 193 219 148 26 chr11 47327035 47327121 -101456351 + MIR SINE MIR 68 160 -68 1604 155 30 26 chr11 47328022 47328325 -101455147 - AluJb SINE Alu -8 304 1 218 308 135 10 chr11 47328347 47328451 -101455021 - MIR SINE MIR -40 222 106 426 308 60 38 chr11 47328509 47328694 -101454778 - MIR SINE MIR -64 198 10 328 264 115 46 chr11 47328799 47328973 -101454499 - MLT1L LTR MaLR -9 606 421 386 304 34 27 chr11 47328976 47329124 -101454348 - L2 LINE L2 -21 3292 3144 235 213 41 49 chr11 47329124 47329160 -101454312 + (TATATG)n Simple_repeat Simple_repeat 2 37 -85 1537 185 52 73 chr11 47329160 47329528 -101453944 + MER46B DNA MER2_type 2 236 0 235 213 41 49 chr11 47329528 47329613 -101453859 + (TATATG)n Simple_repeat Simple_repeat 37 122 0 578 219 183 0 chr11 47329618 47329837 -101453635 - L2 LINE L2 -148 3165 2907 716 307 60 43 chr11 47329853 47330273 -101453199 - MLT1L LTR MaLR -186 429 3 906 238 93 21 chr11 47330946 47331236 -101452236 - MLT1K LTR MaLR -14 574 264 180 0 0 0 chr11 47331318 47331338 -101452134 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 330 264 71 50 chr11 47331713 47331819 -101451653 + MIR SINE MIR 32 143 -119 2124 145 49 22 chr11 47331819 47332184 -101451288 + THE1C LTR MaLR 1 375 0 330 264 71 50 chr11 47332184 47332217 -101451255 + MIR SINE MIR 143 174 -88 835 157 79 28 chr11 47332407 47332585 -101450887 + MER53 DNA DNA 1 187 -2 308 164 147 69 chr11 47333394 47333510 -101449962 + MIR SINE MIR 46 170 -92 1070 254 77 15 chr11 47333746 47334084 -101449388 - MLT1J LTR MaLR -152 359 1 1590 249 64 47 chr11 47334565 47335143 -101448329 - MLT1K LTR MaLR 0 588 1 466 232 88 16 chr11 47335272 47335397 -101448075 + MIR SINE MIR 16 149 -113 427 313 56 25 chr11 47336318 47336503 -101446969 + MIR SINE MIR 3 195 -62 830 196 98 5 chr11 47337759 47337953 -101445519 - LTR16C LTR ERVL -6 485 274 1345 209 64 72 chr11 47338339 47338713 -101444759 + MLT1A2 LTR MaLR 4 374 0 552 269 64 6 chr11 47338718 47338850 -101444622 + MIR SINE MIR 28 172 -90 1139 242 62 72 chr11 47338850 47339403 -101444069 - MLT1H LTR MaLR -2 547 1 552 269 64 6 chr11 47339403 47339426 -101444046 + MIR SINE MIR 172 192 -70 895 202 44 0 chr11 47341489 47341672 -101441800 + MER58A DNA MER1_type 34 224 0 719 227 187 5 chr11 47341692 47341890 -101441582 + MIR SINE MIR 17 250 -12 884 131 0 8 chr11 47341933 47342063 -101441409 - FLAM_C SINE Alu -4 129 1 228 265 0 0 chr11 47342147 47342196 -101441276 + MER5A DNA MER1_type 56 104 -85 228 179 0 0 chr11 47342318 47342357 -101441115 + MER81 DNA DNA 75 113 -1 303 250 35 35 chr11 47343193 47343309 -101440163 + MIR3 SINE MIR 15 130 -78 218 200 0 22 chr11 47344362 47344407 -101439065 + CT-rich Low_complexity Low_complexity 2 45 0 2136 174 28 48 chr11 47344460 47344897 -101438575 - MSTA LTR MaLR 0 428 1 532 276 37 8 chr11 47345870 47346004 -101437468 - MIR SINE MIR -78 184 47 645 283 79 17 chr11 47347320 47347560 -101435912 + L2 LINE L2 2815 3069 -244 3071 251 99 65 chr11 47347643 47347805 -101435667 - HAL1 LINE L1 -6 2501 2346 2167 105 0 0 chr11 47347805 47348081 -101435391 - AluSc SINE Alu -3 306 31 3071 251 99 65 chr11 47348081 47348654 -101434818 - HAL1 LINE L1 -161 2346 1794 913 244 57 0 chr11 47348654 47348863 -101434609 - MER58A DNA MER1_type -3 221 1 3071 251 99 65 chr11 47348863 47349998 -101433474 - HAL1 LINE L1 -713 1794 566 274 284 60 23 chr11 47350042 47350260 -101433212 - HAL1 LINE L1 -2172 335 110 493 264 0 16 chr11 47350568 47350697 -101432775 - L2 LINE L2 -3 3310 3184 196 158 53 0 chr11 47350841 47350879 -101432593 - L2 LINE L2 -345 2968 2929 1539 264 69 34 chr11 47350880 47351433 -101432039 - MLT1E LTR MaLR 0 593 22 1312 134 5 0 chr11 47351438 47351624 -101431848 - AluJo SINE Alu -9 303 117 28639 50 2 11 chr11 47351624 47355953 -101427519 - L1PA5 LINE L1 -14 6140 1855 2153 122 23 3 chr11 47355953 47356257 -101427215 + AluY SINE Alu 2 311 0 28639 50 2 11 chr11 47356257 47356524 -101426948 - L1PA5 LINE L1 -4299 1855 1587 1034 275 151 55 chr11 47357561 47358120 -101425352 - L2 LINE L2 -4 3309 2805 1671 183 26 20 chr11 47358120 47358426 -101425046 + AluJo SINE Alu 1 308 -4 1034 275 151 55 chr11 47358426 47358806 -101424666 - L2 LINE L2 -508 2805 2269 261 219 0 0 chr11 47358955 47359028 -101424444 + (CAT)n Simple_repeat Simple_repeat 3 75 0 217 226 0 29 chr11 47359119 47359221 -101424251 + (CACCAT)n Simple_repeat Simple_repeat 4 102 0 289 292 16 49 chr11 47359246 47359431 -101424041 + (CACCAT)n Simple_repeat Simple_repeat 2 180 0 1076 122 156 10 chr11 47359562 47359767 -101423705 + MLT2A1 LTR ERVL 178 412 -32 313 76 63 0 chr11 47359767 47359846 -101423626 + (TA)n Simple_repeat Simple_repeat 2 85 0 40423 67 3 5 chr11 47359892 47365111 -101418361 + HERVL-A1 LTR ERVL 1 5210 -444 253 262 36 33 chr11 47365234 47365379 -101418093 - MIR SINE MIR -14 248 56 288 270 0 0 chr11 47365915 47365978 -101417494 - MIR SINE MIR -3 259 197 398 134 227 52 chr11 47366372 47366469 -101417003 - MIR SINE MIR -58 204 91 300 247 146 0 chr11 47366794 47366883 -101416589 - L1ME4a LINE L1 -1 6120 6019 334 280 20 10 chr11 47367170 47367270 -101416202 - MIR SINE MIR -85 123 23 2064 146 17 0 chr11 47367316 47367617 -101415855 + AluSx SINE Alu 3 308 -4 1144 194 43 17 chr11 47367636 47367868 -101415604 - MIR SINE MIR -10 252 15 248 323 0 0 chr11 47367974 47368039 -101415433 - MIR SINE MIR -110 98 34 227 255 255 0 chr11 47368699 47368793 -101414679 - L2 LINE L2 0 3272 3155 636 278 172 18 chr11 47369186 47369413 -101414059 - MIR SINE MIR 0 262 1 222 227 36 118 chr11 47369663 47369773 -101413699 - MIR SINE MIR -72 136 36 394 328 66 12 chr11 47371031 47371287 -101412185 + L2 LINE L2 2687 2956 -358 451 202 39 19 chr11 47371966 47372070 -101411402 + MIR SINE MIR 51 156 -106 2282 88 0 3 chr11 47372203 47372486 -101410986 - AluSq SINE Alu -10 303 22 647 248 164 26 chr11 47372741 47372967 -101410505 - MIR SINE MIR -1 261 5 204 280 93 27 chr11 47373050 47373125 -101410347 + MER91C DNA MER1_type 25 104 -36 248 268 29 72 chr11 47373726 47373864 -101409608 - MER113 DNA MER1_type? -40 481 350 313 188 34 17 chr11 47374037 47374137 -101409335 - MIR SINE MIR -87 121 19 * 1100 248 115 49 chr11 47374092 47374558 -101408914 + L2 LINE L2 2798 3312 -1 755 188 40 97 chr11 47374561 47374668 -101408804 - MER113 DNA MER1_type? -221 300 188 2511 80 0 3 chr11 47374668 47374979 -101408493 - AluY SINE Alu -1 310 1 755 188 40 97 chr11 47374979 47375041 -101408431 - MER113 DNA MER1_type? -333 188 124 1787 163 0 37 chr11 47375041 47375341 -101408131 - AluJb SINE Alu -22 290 2 755 188 40 97 chr11 47375341 47375468 -101408004 - MER113 DNA MER1_type? -397 124 20 333 331 45 8 chr11 47375490 47375623 -101407849 - MIR SINE MIR -55 153 16 225 356 33 0 chr11 47375732 47375822 -101407650 + L2 LINE L2 3221 3313 0 255 214 32 135 chr11 47376558 47376684 -101406788 - MIR SINE MIR -80 128 16 181 309 0 0 chr11 47376792 47376847 -101406625 + MIR SINE MIR 113 167 -95 297 345 18 9 chr11 47377429 47377542 -101405930 - MIR SINE MIR -58 150 37 4127 147 8 2 chr11 47377676 47378307 -101405165 + MER41B LTR ERV1 1 635 0 2225 79 55 7 chr11 47378765 47379056 -101404416 - AluSx SINE Alu -7 305 1 384 226 43 13 chr11 47379721 47379830 -101403642 + MIR SINE MIR 11 121 -87 346 276 47 24 chr11 47380049 47380176 -101403296 - MIR3 SINE MIR -77 131 2 1699 120 33 7 chr11 47381342 47381616 -101401856 + MLT2A1 LTR ERVL 124 404 -40 24 0 0 0 chr11 47381616 47381640 -101401832 + AT_rich Low_complexity Low_complexity 1 24 0 788 49 64 23 chr11 47381640 47381985 -101401487 + (TA)n Simple_repeat Simple_repeat 1 360 0 264 155 35 17 chr11 47381997 47382055 -101401417 + MLT2A1 LTR ERVL 386 444 0 * 543 240 40 72 chr11 47382055 47382207 -101401265 + MER2 DNA MER2_type 107 250 -95 1933 136 20 3 chr11 47382207 47382502 -101400970 - AluSx SINE Alu -12 300 1 543 240 40 72 chr11 47382502 47382596 -101400876 + MER2 DNA MER2_type 250 345 0 305 337 0 0 chr11 47382597 47382680 -101400792 + (CAG)n Simple_repeat Simple_repeat 1 83 0 216 235 0 0 chr11 47382784 47382852 -101400620 + (ATG)n Simple_repeat Simple_repeat 1 68 0 389 216 0 53 chr11 47382885 47383075 -101400397 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 481 271 8 45 chr11 47383150 47383283 -101400189 - MLT1J LTR MaLR -160 351 224 529 152 0 29 chr11 47383361 47383466 -101400006 - L1PB1 LINE L1 -1 6150 6049 1355 212 40 72 chr11 47383937 47384314 -101399158 + MLT1A1 LTR MaLR 1 365 0 610 305 14 24 chr11 47384415 47384628 -101398844 - MLT1A2 LTR MaLR -163 211 1 2280 107 7 0 chr11 47385132 47385442 -101398030 + AluSx SINE Alu 1 312 0 1917 225 8 0 chr11 47385621 47385981 -101397491 + MLT1A1 LTR MaLR 1 363 -2 204 164 66 0 chr11 47386021 47386082 -101397390 + (TA)n Simple_repeat Simple_repeat 2 66 0 288 263 141 10 chr11 47386093 47386192 -101397280 + L2 LINE L2 3195 3306 -7 739 306 32 45 chr11 47386377 47386745 -101396727 + MLT1I LTR MaLR 56 389 -20 1993 128 0 20 chr11 47387136 47387440 -101396032 - AluSx SINE Alu -9 303 6 2286 96 0 0 chr11 47387446 47387749 -101395723 - AluSx SINE Alu -9 303 1 241 191 32 85 chr11 47387976 47388070 -101395402 - MIR SINE MIR -76 132 44 650 265 60 71 chr11 47388217 47388485 -101394987 - MER102a DNA MER1_type -3 327 63 645 165 118 0 chr11 47388691 47388818 -101394654 + Tigger1 DNA MER2_type 1 142 -2276 1920 130 17 7 chr11 47388833 47389126 -101394346 - AluSx SINE Alu -16 296 1 1003 151 38 5 chr11 47389137 47389322 -101394150 + Tigger1 DNA MER2_type 2227 2417 -1 35 54 0 0 chr11 47389467 47389523 -101393949 + AT_rich Low_complexity Low_complexity 1 56 0 2004 127 0 10 chr11 47389530 47389855 -101393617 + AluSx SINE Alu 1 312 0 372 237 119 25 chr11 47390823 47390941 -101392531 + MIR SINE MIR 65 193 -69 2056 116 0 10 chr11 47391049 47391351 -101392121 + AluSc SINE Alu 1 299 -10 1696 265 161 6 chr11 47391516 47392025 -101391447 + MLT1G1 LTR MaLR 1 588 -7 971 166 195 23 chr11 47392515 47392837 -101390635 + MSTC LTR MaLR 1 425 -3 186 241 190 0 chr11 47392852 47392910 -101390562 - L2 LINE L2 -3 3310 3242 1644 284 65 35 chr11 47392939 47393039 -101390433 + MER115 DNA AcHobo 118 213 -480 1813 138 7 0 chr11 47393039 47393365 -101390107 - AluJb SINE Alu 0 328 1 1644 284 65 35 chr11 47393365 47393813 -101389659 + MER115 DNA AcHobo 213 684 -9 2759 121 4 74 chr11 47394085 47394572 -101388900 - LTR32 LTR ERVL -5 466 14 402 98 49 0 chr11 47394699 47394760 -101388712 + MER5A DNA MER1_type 1 64 -125 229 345 12 48 chr11 47394891 47395056 -101388416 - MIR SINE MIR -10 252 94 777 196 113 0 chr11 47395141 47395309 -101388163 - MER5A DNA MER1_type 0 189 3 403 296 72 13 chr11 47395822 47395974 -101387498 + MIR SINE MIR 102 262 0 345 359 155 8 chr11 47397842 47398087 -101385385 - L3 LINE CR1 -2 1575 1295 531 360 116 11 chr11 47398300 47398653 -101384819 - L1ME4a LINE L1 -100 6021 5632 1028 148 28 6 chr11 47399073 47399255 -101384217 - MER5A DNA MER1_type 0 189 4 249 354 61 0 chr11 47399464 47399563 -101383909 - MIR SINE MIR -56 152 48 582 279 66 6 chr11 47399886 47400069 -101383403 - MIR SINE MIR -12 250 57 281 304 16 16 chr11 47400230 47400355 -101383117 + MIR SINE MIR 20 144 -64 250 292 71 91 chr11 47400411 47400565 -101382907 - MIR SINE MIR -71 191 41 292 337 88 26 chr11 47401211 47401404 -101382068 + MIR SINE MIR 51 255 -7 315 174 47 47 chr11 47401591 47401677 -101381795 + MIR SINE MIR 63 148 -114 264 288 160 24 chr11 47403986 47404081 -101379391 - MIR SINE MIR -84 178 61 1903 135 51 0 chr11 47404081 47404377 -101379095 + AluSx SINE Alu 1 311 -1 264 288 160 24 chr11 47404377 47404406 -101379066 - MIR SINE MIR -201 61 37 642 283 72 32 chr11 47404851 47405102 -101378370 + MIR SINE MIR 2 262 0 188 290 87 14 chr11 47405168 47405237 -101378235 + L2 LINE L2 3105 3178 -94 198 309 83 12 chr11 47405552 47405636 -101377836 - MER5A DNA MER1_type -43 146 57 309 311 76 23 chr11 47406137 47406269 -101377203 - MIR3 SINE MIR -67 141 3 250 215 89 0 chr11 47406660 47406739 -101376733 + MIR3 SINE MIR 101 186 -22 449 239 104 2 chr11 47407270 47407396 -101376076 + MIR SINE MIR 31 167 -41 476 269 36 42 chr11 47407750 47407917 -101375555 - MIR SINE MIR -50 212 47 2192 109 0 3 chr11 47407918 47408221 -101375251 - AluSq SINE Alu -9 304 3 180 0 0 0 chr11 47408907 47408927 -101374545 + (CAT)n Simple_repeat Simple_repeat 2 21 0 474 226 195 19 chr11 47408934 47409093 -101374379 - MIR SINE MIR -10 252 66 689 249 67 0 chr11 47409737 47409902 -101373570 + MER5B DNA MER1_type 1 176 -2 1182 186 31 22 chr11 47410076 47410302 -101373170 + AluJb SINE Alu 61 288 -24 480 292 15 7 chr11 47410466 47410603 -101372869 - L2 LINE L2 -15 3298 3161 226 237 274 22 chr11 47410642 47410777 -101372695 - MER5B DNA MER1_type -9 169 1 184 284 123 76 chr11 47410779 47410990 -101372482 - L2 LINE L2 -247 3066 2846 234 219 0 0 chr11 47411562 47411626 -101371846 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 1745 72 0 5 chr11 47411975 47412196 -101371276 - AluY SINE Alu -90 221 2 621 215 50 82 chr11 47412250 47412391 -101371081 - MER58 DNA MER1_type 0 2420 2276 2310 80 3 13 chr11 47412391 47412702 -101370770 + AluY SINE Alu 1 308 -3 621 215 50 82 chr11 47412702 47412779 -101370693 - MER58 DNA MER1_type -144 2276 4 208 209 93 23 chr11 47413299 47413385 -101370087 + MIR SINE MIR 35 126 -136 394 205 154 0 chr11 47413677 47413794 -101369678 + MIR SINE MIR 50 184 -78 2186 93 20 0 chr11 47413881 47414183 -101369289 - AluSq SINE Alu -5 308 1 340 317 97 0 chr11 47414885 47415030 -101368442 - L3 LINE CR1 -31 1546 1388 226 217 33 171 chr11 47415069 47415221 -101368251 + L3 LINE CR1 1369 1499 -78 344 231 131 31 chr11 47415918 47416048 -101367424 + L1ME4a LINE L1 5789 5931 -190 198 0 0 0 chr11 47416059 47416081 -101367391 + (CA)n Simple_repeat Simple_repeat 2 23 0 332 264 124 25 chr11 47416085 47416206 -101367266 + L1ME4a LINE L1 5983 6115 -6 252 0 0 0 chr11 47416453 47416481 -101366991 + (CCCCAG)n Simple_repeat Simple_repeat 3 30 0 461 279 41 0 chr11 47416551 47416673 -101366799 + MIR SINE MIR 71 197 -65 483 273 176 10 chr11 47417559 47417764 -101365708 + L1ME4a LINE L1 5865 6103 -18 891 148 0 15 chr11 47417852 47417987 -101365485 + FLAM_C SINE Alu 1 133 0 438 196 9 54 chr11 47420199 47420311 -101363161 - MER96B DNA MER1_type? -187 230 124 1837 104 11 0 chr11 47420311 47420571 -101362901 - AluSq SINE Alu -1 312 50 1479 164 34 7 chr11 47421085 47421354 -101362118 - AluJb SINE Alu -36 276 1 383 259 71 67 chr11 47421438 47421662 -101361810 - L2 LINE L2 -56 3216 2992 213 340 10 20 chr11 47422424 47422524 -101360948 + MIR SINE MIR 86 184 -78 704 274 75 5 chr11 47422626 47422838 -101360634 - MIR SINE MIR -4 258 32 360 259 14 61 chr11 47423630 47423777 -101359695 - MER5B DNA MER1_type -38 140 1 214 257 0 27 chr11 47423803 47423877 -101359595 - MIR SINE MIR -76 132 61 589 259 14 0 chr11 47423931 47424070 -101359402 - MIR SINE MIR -109 153 13 699 263 60 35 chr11 47424137 47424369 -101359103 + MIR SINE MIR 20 257 -5 312 281 187 6 chr11 47424387 47424543 -101358929 - MIR3 SINE MIR -63 145 8 208 387 58 0 chr11 47424770 47424943 -101358529 + MIR SINE MIR 48 230 -32 875 292 115 11 chr11 47425756 47426198 -101357274 + L2 LINE L2 2825 3312 -1 231 290 131 41 chr11 47426301 47426446 -101357026 + MIR SINE MIR 104 261 -1 470 265 57 73 chr11 47426533 47426778 -101356694 - L2 LINE L2 -8 3305 3065 687 270 52 24 chr11 47427543 47427754 -101355718 + MIR SINE MIR 46 262 0 257 276 0 13 chr11 47427973 47428049 -101355423 - MLT1L LTR MaLR -186 429 355 1370 147 103 15 chr11 47428124 47428397 -101355075 + AluJb SINE Alu 6 302 -10 324 290 14 41 chr11 47429581 47429726 -101353746 - MIR3 SINE MIR -65 143 3 296 272 43 0 chr11 47430422 47430514 -101352958 + MIR SINE MIR 59 154 -108 615 252 129 24 chr11 47430515 47430725 -101352747 + MER46C DNA MER2_type 2 233 -105 340 284 10 10 chr11 47431050 47431152 -101352320 + MIR SINE MIR 23 124 -84 230 319 28 0 chr11 47431920 47431992 -101351480 + L3 LINE CR1 427 500 -1077 406 296 158 71 chr11 47432107 47432173 -101351299 + L3 LINE CR1 1233 1292 -285 234 173 0 58 chr11 47432173 47432225 -101351247 + Alu SINE Alu 155 203 -97 406 296 158 71 chr11 47432225 47432418 -101351054 + L3 LINE CR1 1292 1570 -7 412 287 23 8 chr11 47432523 47432652 -101350820 + MIR SINE MIR 16 146 -116 546 164 253 34 chr11 47432670 47432738 -101350734 + MER45A DNA AcHobo 1 53 -1528 2179 134 0 0 chr11 47432738 47433044 -101350428 - AluSx SINE Alu -6 306 1 546 164 253 34 chr11 47433044 47433121 -101350351 + MER45A DNA AcHobo 53 178 0 249 273 105 14 chr11 47433339 47433482 -101349990 - MLT1K LTR MaLR -354 234 79 215 290 194 11 chr11 47433997 47434090 -101349382 + MIR SINE MIR 16 125 -137 892 284 11 23 chr11 47434121 47434385 -101349087 + MIR SINE MIR 2 262 0 23 0 0 0 chr11 47434445 47434468 -101349004 + AT_rich Low_complexity Low_complexity 1 23 0 2111 115 0 16 chr11 47434533 47434846 -101348626 - AluY SINE Alu -3 308 1 1751 170 7 0 chr11 47435451 47435763 -101347709 + AluSx SINE Alu 1 314 0 1161 129 0 0 chr11 47435911 47436081 -101347391 - AluSg/x SINE Alu 0 312 143 1257 270 63 48 chr11 47436351 47437012 -101346460 - L2 LINE L2 -7 3306 2647 409 312 83 10 chr11 47437605 47437810 -101345662 + L1ME3 LINE L1 5940 6159 -3 237 132 0 0 chr11 47437818 47437856 -101345616 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 198 291 188 8 chr11 47438515 47438632 -101344840 + MIR SINE MIR 98 235 -27 2374 74 0 0 chr11 47439198 47439494 -101343978 + AluSx SINE Alu 11 306 -6 673 272 87 28 chr11 47439603 47439830 -101343642 - MIR SINE MIR -24 238 6 258 193 227 84 chr11 47440768 47440887 -101342585 + MIR SINE MIR 71 152 -56 2510 42 3 10 chr11 47441392 47441701 -101341771 + AluY SINE Alu 1 307 -4 1877 128 7 0 chr11 47442732 47443005 -101340467 + AluSx SINE Alu 36 310 -2 247 302 81 12 chr11 47443327 47443413 -101340059 - MER5A DNA MER1_type -37 152 61 193 317 79 0 chr11 47443334 47443435 -101340037 + MER5A DNA MER1_type 54 162 -27 * 223 292 15 0 chr11 47443691 47443756 -101339716 + MIR SINE MIR 32 97 -111 278 250 23 34 chr11 47443857 47443945 -101339527 - MIR SINE MIR -163 99 13 183 80 0 0 chr11 47445134 47445159 -101338313 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 386 257 37 9 chr11 47445162 47445271 -101338201 - L2 LINE L2 -13 3300 3189 223 263 0 26 chr11 47445307 47445383 -101338089 + (CA)n Simple_repeat Simple_repeat 2 75 0 205 340 120 0 chr11 47445623 47445723 -101337749 + MIR SINE MIR 102 213 -49 2110 139 35 41 chr11 47446500 47446866 -101336606 - THE1B LTR MaLR 0 364 1 221 330 58 29 chr11 47447155 47447258 -101336214 - MIR SINE MIR -63 199 94 345 250 142 25 chr11 47447495 47447615 -101335857 - L2 LINE L2 0 3272 3139 1774 207 130 51 chr11 47448418 47448925 -101334547 + MLT1H LTR MaLR 1 547 -2 612 299 31 59 chr11 47448939 47449193 -101334279 - MIR SINE MIR 0 262 16 214 195 0 0 chr11 47449438 47449479 -101333993 - L2 LINE L2 -4 3268 3228 395 328 24 31 chr11 47449527 47449719 -101333753 - MIR SINE MIR -62 146 9 292 226 10 78 chr11 47450419 47450521 -101332951 + MIR SINE MIR 50 144 -64 270 291 47 11 chr11 47450637 47450735 -101332737 - MIR SINE MIR -90 118 16 419 228 53 9 chr11 47451120 47451234 -101332238 + MIR SINE MIR 108 226 -36 517 293 15 8 chr11 47451750 47451883 -101331589 + L2 LINE L2 3180 3313 0 306 276 6 104 chr11 47451999 47452097 -101331375 + MER5A DNA MER1_type 43 120 -69 2088 95 3 50 chr11 47452097 47452414 -101331058 - AluSp SINE Alu -11 302 1 306 276 6 104 chr11 47452414 47452478 -101330994 + MER5A DNA MER1_type 120 189 0 2407 85 3 0 chr11 47453214 47453521 -101329951 - AluSp SINE Alu -5 308 1 356 281 62 34 chr11 47453636 47453782 -101329690 + L2 LINE L2 3123 3272 0 206 339 48 24 chr11 47454073 47454197 -101329275 - L2 LINE L2 -842 2472 2346 1801 153 32 62 chr11 47454984 47455039 -101328433 - MER46B DNA MER2_type -2495 236 181 180 0 0 0 chr11 47455039 47455059 -101328413 + (TA)n Simple_repeat Simple_repeat 2 21 0 1981 130 0 3 chr11 47455059 47455343 -101328129 - AluSq SINE Alu -28 285 3 1801 153 32 62 chr11 47455343 47455658 -101327814 - MER46B DNA MER2_type -2548 183 1 25 31 0 0 chr11 47455962 47455994 -101327478 + AT_rich Low_complexity Low_complexity 1 32 0 354 278 78 17 chr11 47456080 47456195 -101327277 + L2 LINE L2 3180 3301 -12 294 274 150 9 chr11 47456920 47457033 -101326439 + MIR SINE MIR 37 165 -97 497 281 8 8 chr11 47557861 47557982 -101225490 + MIR SINE MIR 32 152 -110 191 200 35 12 chr11 47558040 47558125 -101225347 + CT-rich Low_complexity Low_complexity 1 87 0 233 200 75 50 chr11 47558163 47558243 -101225229 - MIR SINE MIR -58 204 123 183 80 0 0 chr11 47558420 47558445 -101225027 + (TCCCC)n Simple_repeat Simple_repeat 5 29 0 * 671 205 0 6 chr11 47558442 47558603 -101224869 + CT-rich Low_complexity Low_complexity 3 162 0 219 326 74 15 chr11 47559550 47559685 -101223787 + MIR SINE MIR 13 155 -107 22 70 0 0 chr11 47560115 47560158 -101223314 + AT_rich Low_complexity Low_complexity 1 43 0 389 252 87 24 chr11 47560636 47560763 -101222709 + MIR3 SINE MIR 7 141 -67 491 249 35 30 chr11 47561012 47561181 -101222291 + MER117 DNA MER1_type 4 173 -24 795 230 47 29 chr11 47561616 47561894 -101221578 + L1ME3A LINE L1 5880 6162 -8 2577 50 0 0 chr11 47561920 47562220 -101221252 + AluY SINE Alu 1 300 -11 297 256 194 8 chr11 47562242 47562371 -101221101 + Charlie8 DNA MER1_type 92 244 -2173 444 291 30 22 chr11 47562514 47562648 -101220824 + MIR SINE MIR 45 179 -83 1782 151 14 21 chr11 47562655 47562940 -101220532 + AluJo SINE Alu 9 291 -21 260 279 35 12 chr11 47563550 47563636 -101219836 + MIR SINE MIR 96 183 -79 336 238 32 71 chr11 47564134 47564260 -101219212 + MIR SINE MIR 25 145 -63 2068 134 34 0 chr11 47564300 47564591 -101218881 + AluSx SINE Alu 1 301 -11 483 350 25 20 chr11 47565090 47565290 -101218182 - MIR SINE MIR -53 209 9 435 356 77 0 chr11 47565323 47565517 -101217955 + MIR SINE MIR 13 221 -41 2613 62 0 0 chr11 47565803 47566110 -101217362 - AluY SINE Alu -4 307 1 246 213 0 0 chr11 47566267 47566314 -101217158 - MIR SINE MIR -71 137 91 287 214 0 0 chr11 47567015 47567071 -101216401 - MIR SINE MIR -88 120 65 462 260 147 17 chr11 47567512 47567689 -101215783 + MIR SINE MIR 26 225 -37 2125 122 0 30 chr11 47567815 47568118 -101215354 + AluSx SINE Alu 6 299 -13 1067 169 52 28 chr11 47568205 47568550 -101214922 + LTR54 LTR ERV1 1 407 -103 428 171 0 0 chr11 47568552 47568628 -101214844 - AluJ/FRAM SINE Alu -8 304 229 502 100 64 18 chr11 47568628 47568738 -101214734 + LTR54B LTR ERV1 382 496 -2 219 323 0 0 chr11 47568741 47568806 -101214666 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 959 212 60 34 chr11 47568806 47569224 -101214248 - LTR37B LTR ERV1 0 468 1 2289 93 0 17 chr11 47569304 47569604 -101213868 - AluSg SINE Alu -15 295 1 304 187 0 22 chr11 47572100 47572191 -101211281 + GA-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr11 47572478 47572504 -101210968 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 2649 181 19 14 chr11 47572562 47573082 -101210390 - L1MB3 LINE L1 0 6183 5661 696 171 28 40 chr11 47573091 47573267 -101210205 - L1MB3 LINE L1 -2061 4085 3912 * 1660 125 33 116 chr11 47573257 47573514 -101209958 - L1M3 LINE L1 -513 5667 5390 229 147 0 0 chr11 47573514 47573548 -101209924 - U2 snRNA snRNA -153 35 2 1731 178 0 14 chr11 47573548 47573860 -101209612 - AluJb SINE Alu 0 308 1 1660 125 33 116 chr11 47573860 47574227 -101209245 - L1M3 LINE L1 -788 5392 5067 * 2295 187 21 23 chr11 47574222 47574736 -101208736 - L1M3 LINE L1 -1995 4151 3639 627 321 25 25 chr11 47574797 47575040 -101208432 - MIR SINE MIR -16 246 4 311 299 11 34 chr11 47575731 47575908 -101207564 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 284 355 55 51 chr11 47575945 47576162 -101207310 - L2 LINE L2 -86 3186 2969 442 231 0 0 chr11 47576612 47576720 -101206752 + L1ME3A LINE L1 6055 6162 -8 486 230 23 58 chr11 47576947 47577121 -101206351 + MER104 DNA Tc2 3 170 -10 408 331 45 6 chr11 47577130 47577308 -101206164 - MIR SINE MIR -27 235 51 246 261 0 15 chr11 47578424 47578489 -101204983 + L1P4 LINE L1 5766 5829 -345 184 83 0 0 chr11 47578748 47578772 -101204700 - MIR SINE MIR -156 106 83 282 29 0 0 chr11 47578787 47578822 -101204650 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 0 0 0 chr11 47579088 47579125 -101204347 - tRNA-Va